Hystricomorpha	ANCESTRAL SPECIES	11	ENSGT00940000157571	ENSGT00390000018078	ENSGT00940000162553 #7	ENSGT00940000162614 #9	ENSGT00940000162205 #10	ENSGT00940000162921 #11	ENSGT00390000012484	ENSGT00940000161233	ENSGT00730000111146 #13	ENSGT01030000234564.a.a.b.a #14	ENSGT00530000063715.a #15	ENSGT00940000159173 #16	ENSGT00940000153524.b.a.a.ab ##18	ENSGT00940000153634.a #19	ENSGT00730000110895.b.b #21	ENSGT00940000160063 #22	ENSGT00940000153941.a.b #23	ENSGT00940000161156 #25	ENSGT00940000159563	ENSGT00390000013488 #27	ENSGT00390000017780.e #28	ENSGT00950000183102.C #29	ENSGT00950000182827.B #30	ENSGT00940000161689 #31	ENSGT00940000158963 #32	ENSGT00940000162057 #33	ENSGT00720000108868 #34	ENSGT00940000157503	ENSGT00940000154102.b	ENSGT00390000008631.b	ENSGT00940000155657
Hystricomorpha_a	ANCESTRAL SPECIES	56	ENSGT00940000161209	ENSGT00940000157571	ENSGT00390000018078	ENSGT00940000162553 #7	ENSGT00940000162614 #9	ENSGT00940000162205 #10	ENSGT00940000162921 #11	ENSGT00940000161233	ENSGT00730000111146 #13	ENSGT01030000234564.a.a.b.a #14	ENSGT00530000063715.a #15	ENSGT00940000159173 #16	ENSGT00940000153524.b.a.a.ab ##18	ENSGT00940000153634.a #19	ENSGT00730000110895.b.b #21	ENSGT00940000160063 #22	ENSGT00940000153941.a.b #23	ENSGT00940000161156 #25	ENSGT00940000159563	ENSGT00390000013488 #27	ENSGT00390000017780.e #28	ENSGT00950000183102.C #29	ENSGT00950000182827.B #30	ENSGT00940000161689 #31	ENSGT00940000158963 #32	ENSGT00940000162057 #33	ENSGT00720000108868 #34	ENSGT00940000157503	ENSGT00940000154102.b	ENSGT00390000008631.b	ENSGT00940000155657
Hystricomorpha_b	ANCESTRAL SPECIES	81	ENSGT00940000161209	ENSGT00940000157571	ENSGT00390000018078	ENSGT00940000162553 #7	ENSGT00940000162614 #9	ENSGT00940000162205 #10	ENSGT00940000162921 #11	ENSGT00940000161233	ENSGT00730000111146 #13	ENSGT01030000234564.a.a.b.a #14	ENSGT00530000063715.a #15	ENSGT00940000159173 #16	ENSGT00940000153524.b.a.a.ab ##18	ENSGT00940000153634.a #19	ENSGT00730000110895.b.b #21	ENSGT00940000160063 #22	ENSGT00940000153941.a.b #23	ENSGT00940000161156 #25	ENSGT00940000159563	ENSGT00390000013488 #27	ENSGT00390000017780.e #28	ENSGT00950000183102.C #29	ENSGT00950000182827.B #30	ENSGT00940000161689 #31	ENSGT00940000158963 #32	ENSGT00940000162057 #33	ENSGT00720000108868 #34	ENSGT00940000157503	ENSGT00940000154102.b	ENSGT00390000008631.b	ENSGT00940000155657
Degu	MODERN SPECIES	96	ZNF81 (ENSODEG00000009602) #7	ENSODEG00000009466 #8	ZNF182 (ENSODEG00000010486) #9	ENSODEG00000009058 #10	ENSODEG00000009360 #11	ENSODEG00000019635 #12	FTSJ1 (ENSODEG00000009855) #13	PORCN (ENSODEG00000008780) #14	ENSODEG00000009371 #15	TBC1D25 (ENSODEG00000009376) #16	ENSODEG00000019740 #17	ENSODEG00000009372 #18	WDR13 (ENSODEG00000009758) #19	ENSODEG00000009972 #20	WAS (ENSODEG00000009320) #21	SUV39H1 (ENSODEG00000010079) #22	ENSODEG00000009872 #23	ENSODEG00000011241 #24	GATA1 (ENSODEG00000008814) #25	ENSODEG00000009461 #26	PCSK1N (ENSODEG00000010528) #27	TIMM17B (ENSODEG00000010704) #28	ENSODEG00000008988 #29	SLC35A2 (ENSODEG00000009076) #30	PIM2 (ENSODEG00000009339) #31	OTUD5 (ENSODEG00000009050) #32	KCND1 (ENSODEG00000010342) #33	GRIPAP1 (ENSODEG00000009943) #34	ENSODEG00000009729 #35
Long-tailed chinchilla	MODERN SPECIES	250							SLC38A5 (ENSCLAG00000004049)	FTSJ1 (ENSCLAG00000011582) #13	PORCN (ENSCLAG00000015764) #14	EBP (ENSCLAG00000002404) #15	TBC1D25 (ENSCLAG00000002644) #16	RBM3 (ENSCLAG00000002908) ##18	WDR13 (ENSCLAG00000003526) #19	ENSCLAG00000003016	WAS (ENSCLAG00000003232) #21	SUV39H1 (ENSCLAG00000004044) #22	GLOD5 (ENSCLAG00000002227) #23	GATA1 (ENSCLAG00000002473) #25	HDAC6 (ENSCLAG00000002563)	PCSK1N (ENSCLAG00000003392) #27	TIMM17B (ENSCLAG00000003552) #28	PQBP1 (ENSCLAG00000004380) #29	SLC35A2 (ENSCLAG00000004591) #30	PIM2 (ENSCLAG00000005773) #31	OTUD5 (ENSCLAG00000006102) #32	KCND1 (ENSCLAG00000002203) #33	GRIPAP1 (ENSCLAG00000002364) #34	ENSCLAG00000017539	TFE3 (ENSCLAG00000002396)	CCDC120 (ENSCLAG00000003931)	PRAF2 (ENSCLAG00000004889)
Guinea pig	MODERN SPECIES	132	ELK1 (ENSCPOG00000009149)	UXT (ENSCPOG00000009154)	ZNF81 (ENSCPOG00000031196) #7	ZNF182 (ENSCPOG00000031427) #9	ENSCPOG00000032054 #10	ENSCPOG00000030434 #11	ENSCPOG00000026336	ENSCPOG00000035952	FTSJ1 (ENSCPOG00000030576) #13	PORCN (ENSCPOG00000003541) #14	EBP (ENSCPOG00000014151) #15	TBC1D25 (ENSCPOG00000003548) #16	RBM3 (ENSCPOG00000003553) ##18	WDR13 (ENSCPOG00000005101) #19	WAS (ENSCPOG00000023506) #21	SUV39H1 (ENSCPOG00000013555) #22	GLOD5 (ENSCPOG00000003997) #23	GATA1 (ENSCPOG00000007573) #25	HDAC6 (ENSCPOG00000008955)	PCSK1N (ENSCPOG00000007567) #27	TIMM17B (ENSCPOG00000008768) #28	PQBP1 (ENSCPOG00000032410) #29	SLC35A2 (ENSCPOG00000020236) #30	PIM2 (ENSCPOG00000006111) #31	OTUD5 (ENSCPOG00000027082) #32	KCND1 (ENSCPOG00000013271) #33	GRIPAP1 (ENSCPOG00000013274) #34	TFE3 (ENSCPOG00000012410)	CCDC120 (ENSCPOG00000012416)	PRAF2 (ENSCPOG00000030120)	WDR45 (ENSCPOG00000012419)
Naked mole-rat female	MODERN SPECIES	31	ENSHGLG00000037561	ENSHGLG00000037959	ENSHGLG00000035322	ENSHGLG00000048980	ENSHGLG00000043694	ENSHGLG00000002944	FTSJ1 (ENSHGLG00000003132) #13	PORCN (ENSHGLG00000001865) #14	EBP (ENSHGLG00000003626) #15	ENSHGLG00000043943	TBC1D25 (ENSHGLG00000005178) #16	ENSHGLG00000042246 ##18	WDR13 (ENSHGLG00000013774) #19	ENSHGLG00000037346	ENSHGLG00000019572 #21	SUV39H1 (ENSHGLG00000007605) #22	ENSHGLG00000008268	GLOD5 (ENSHGLG00000035331) #23	GATA1 (ENSHGLG00000009775) #25	HDAC6 (ENSHGLG00000010523)	PCSK1N (ENSHGLG00000002975) #27	ENSHGLG00000020012	TIMM17B (ENSHGLG00000040054) #28	PQBP1 (ENSHGLG00000001252) #29	SLC35A2 (ENSHGLG00000001312) #30	PIM2 (ENSHGLG00000001519) #31	ENSHGLG00000001569 #32	KCND1 (ENSHGLG00000001895) #33	GRIPAP1 (ENSHGLG00000002058) #34	TFE3 (ENSHGLG00000001383)	CCDC120 (ENSHGLG00000001767)