Murinae	ANCESTRAL SPECIES	33	ENSGT00390000003231.b ##9	ENSGT00530000063186.a #11	ENSGT00950000182841.b.a.a.a.i.b	ENSGT00940000163515.j	ENSGT00950000182841.b.a.a.a.i.a.a	ENSGT00940000166424 #13	ENSGT00390000012484.d	ENSGT00940000161233 #14	ENSGT00730000111146 #15	ENSGT01030000234564.a.a.b.a #16	ENSGT00530000063715.a #17	ENSGT00940000159173 #18	ENSGT00940000153524.b.a.a #19	ENSGT00940000153634.a #20	ENSGT00730000110895.b.b #21	ENSGT00940000160063 #22	ENSGT00940000153941.a.b #23	ENSGT00940000161156 #24	ENSGT00940000159563 #25	ENSGT00940000162901 #26	ENSGT00390000013488 #27	ENSGT00390000017780.e #29	ENSGT00950000183102.C #30	ENSGT00950000182827.B #31	ENSGT00940000161689 #32	ENSGT00940000158963 #33	ENSGT00940000162057 #34	ENSGT00720000108868 #35	ENSGT00940000157503 #36	ENSGT00940000154102.b #37	ENSGT00390000008631.b
Mus	ANCESTRAL SPECIES	9	ENSGT00940000160244 #8	ENSGT00940000162492	ENSGT00390000003231.b ##9	ENSGT00530000063186.a #11	ENSGT00950000182841.b.a.a.a.i.a.a	ENSGT00940000166424 #13	ENSGT00390000012484.d	ENSGT00940000161233 #14	ENSGT00730000111146 #15	ENSGT01030000234564.a.a.b.a #16	ENSGT00530000063715.a #17	ENSGT00940000159173 #18	ENSGT00940000153524.b.a.a #19	ENSGT00940000153634.a #20	ENSGT00730000110895.b.b #21	ENSGT00940000160063 #22	ENSGT00940000153941.a.b #23	ENSGT00940000161156 #24	ENSGT00940000159563 #25	ENSGT00940000162901 #26	ENSGT00390000013488 #27	ENSGT00390000017780.e #29	ENSGT00950000183102.C #30	ENSGT00950000182827.B #31	ENSGT00940000161689 #32	ENSGT00940000158963 #33	ENSGT00940000162057 #34	ENSGT00720000108868 #35	ENSGT00940000157503 #36	ENSGT00940000154102.b #37	ENSGT00390000008631.b
Mus_A	ANCESTRAL SPECIES	15	ENSGT00940000162492.h	ENSGT00390000003231.b ##9	ENSGT00530000063186.a #11	ENSGT00940000169466 #12	ENSGT00950000182841.b.a.a.a.i.a.a	ENSGT00940000166424 #13	ENSGT00390000012484.d	ENSGT00940000161233 #14	ENSGT00730000111146 #15	ENSGT01030000234564.a.a.b.a #16	ENSGT00530000063715.a #17	ENSGT00940000159173 #18	ENSGT00940000153524.b.a.a #19	ENSGT00940000153634.a #20	ENSGT00730000110895.b.b #21	ENSGT00940000160063 #22	ENSGT00940000153941.a.b #23	ENSGT00940000161156 #24	ENSGT00940000159563 #25	ENSGT00940000162901 #26	ENSGT00390000013488 #27	ENSGT00390000017780.e #29	ENSGT00950000183102.C #30	ENSGT00950000182827.B #31	ENSGT00940000161689 #32	ENSGT00940000158963 #33	ENSGT00940000162057 #34	ENSGT00720000108868 #35	ENSGT00940000157503 #36	ENSGT00940000154102.b #37	ENSGT00390000008631.b
Ryukyu mouse	MODERN SPECIES	19	Dynlt3 (MGP_CAROLIEiJ_G0032926) #7	Cybb (MGP_CAROLIEiJ_G0032925) #8	MGP_CAROLIEiJ_G0032924 #9	MGP_CAROLIEiJ_G0032923 #10	Lancl3 (MGP_CAROLIEiJ_G0032922) #11	4930402K13Rik (MGP_CAROLIEiJ_G0032921) #12	B630019K06Rik (MGP_CAROLIEiJ_G0032920) #13	Slc38a5 (MGP_CAROLIEiJ_G0032919) #14	Ftsj1 (MGP_CAROLIEiJ_G0032918) #15	Porcn (MGP_CAROLIEiJ_G0032917) #16	Ebp (MGP_CAROLIEiJ_G0032916) #17	Tbc1d25 (MGP_CAROLIEiJ_G0032915) #18	MGP_CAROLIEiJ_G0032914 #19	Wdr13 (MGP_CAROLIEiJ_G0032913) #20	Was (MGP_CAROLIEiJ_G0032912) #21	Suv39h1 (MGP_CAROLIEiJ_G0032911) #22	Glod5 (MGP_CAROLIEiJ_G0032910) #23	Gata1 (MGP_CAROLIEiJ_G0032909) #24	Hdac6 (MGP_CAROLIEiJ_G0032908) #25	Eras (MGP_CAROLIEiJ_G0032907) #26	Pcsk1n (MGP_CAROLIEiJ_G0032906) #27	MGP_CAROLIEiJ_G0032905 #28	Timm17b (MGP_CAROLIEiJ_G0032904) #29	Pqbp1 (MGP_CAROLIEiJ_G0032903) #30	Slc35a2 (MGP_CAROLIEiJ_G0032902) #31	Pim2 (MGP_CAROLIEiJ_G0032901) #32	Otud5 (MGP_CAROLIEiJ_G0032900) #33	Kcnd1 (MGP_CAROLIEiJ_G0032899) #34	Gripap1 (MGP_CAROLIEiJ_G0032898) #35	Tfe3 (MGP_CAROLIEiJ_G0032897) #36	Ccdc120 (MGP_CAROLIEiJ_G0032896) #37
Mus_B	ANCESTRAL SPECIES	14	ENSGT00390000003231.b ##9	ENSGT00530000063186.a #11	ENSGT00940000169466 #12	ENSGT00950000182841.b.a.a.a.i.a.a	ENSGT00940000166424 #13	ENSGT00390000012484.d.e.a.b	ENSGT00390000012484.d.e.a.a.a.a.a.a.a.a.a	ENSGT00940000161233 #14	ENSGT00730000111146 #15	ENSGT01030000234564.a.a.b.a #16	ENSGT00530000063715.a #17	ENSGT00940000159173 #18	ENSGT00940000153524.b.a.a #19	ENSGT00940000153634.a #20	ENSGT00730000110895.b.b #21	ENSGT00940000160063 #22	ENSGT00940000153941.a.b #23	ENSGT00940000161156 #24	ENSGT00940000159563 #25	ENSGT00940000162901 #26	ENSGT00390000013488 #27	ENSGT00390000017780.e #29	ENSGT00950000183102.C #30	ENSGT00950000182827.B #31	ENSGT00940000161689 #32	ENSGT00940000158963 #33	ENSGT00940000162057 #34	ENSGT00720000108868 #35	ENSGT00940000157503 #36	ENSGT00940000154102.b #37	ENSGT00390000008631.b
Mouse	MODERN SPECIES	37	Ssxb3 (ENSMUSG00000079701)	Ssxb6 (ENSMUSG00000079702)	Gm14459 (ENSMUSG00000079704)	Ssxb2 (ENSMUSG00000023165)	Ssxb1 (ENSMUSG00000079705)	Ssxb9 (ENSMUSG00000068218)	Ssxb10 (ENSMUSG00000068219)	Slc38a5 (ENSMUSG00000031170) #14	Ftsj1 (ENSMUSG00000031171) #15	Porcn (ENSMUSG00000031169) #16	Ebp (ENSMUSG00000031168) #17	Tbc1d25 (ENSMUSG00000039201) #18	Rbm3 (ENSMUSG00000031167) #19	Wdr13 (ENSMUSG00000031166) #20	Was (ENSMUSG00000031165) #21	Suv39h1 (ENSMUSG00000039231) #22	Glod5 (ENSMUSG00000031163) #23	Gata1 (ENSMUSG00000031162) #24	Hdac6 (ENSMUSG00000031161) #25	Eras (ENSMUSG00000031160) #26	Pcsk1n (ENSMUSG00000039278) #27	Timm17b (ENSMUSG00000031158) #29	Pqbp1 (ENSMUSG00000031157) #30	Slc35a2 (ENSMUSG00000031156) #31	Pim2 (ENSMUSG00000031155) #32	Otud5 (ENSMUSG00000031154) #33	Kcnd1 (ENSMUSG00000009731) #34	Gripap1 (ENSMUSG00000031153) #35	Tfe3 (ENSMUSG00000000134) #36	Ccdc120 (ENSMUSG00000031150) #37	Praf2 (ENSMUSG00000031149)
Mus_C	ANCESTRAL SPECIES	27	ENSGT00940000160244 #8	ENSGT00390000003231.b ##9	ENSGT00860000135843	ENSGT00530000063186.a #11	ENSGT00940000169466 #12	ENSGT00950000182841.b.a.a.a.i.a.a	ENSGT00940000166424 #13	ENSGT00940000161233 #14	ENSGT00730000111146 #15	ENSGT01030000234564.a.a.b.a #16	ENSGT00530000063715.a #17	ENSGT00940000159173 #18	ENSGT00940000153524.b.a.a #19	ENSGT00940000153634.a #20	ENSGT00730000110895.b.b #21	ENSGT00940000160063 #22	ENSGT00940000153941.a.b #23	ENSGT00940000161156 #24	ENSGT00940000159563 #25	ENSGT00940000162901 #26	ENSGT00390000013488 #27	ENSGT00390000017780.e #29	ENSGT00950000183102.C #30	ENSGT00950000182827.B #31	ENSGT00940000161689 #32	ENSGT00940000158963 #33	ENSGT00940000162057 #34	ENSGT00720000108868 #35	ENSGT00940000157503 #36	ENSGT00940000154102.b #37	ENSGT00390000008631.b
spretus	MODERN SPECIES	19	Xk (MGP_SPRETEiJ_G0034075) ##9	MGP_SPRETEiJ_G0034074	Lancl3 (MGP_SPRETEiJ_G0034073) #11	4930402K13Rik (MGP_SPRETEiJ_G0034072) #12	MGP_SPRETEiJ_G0034071	MGP_SPRETEiJ_G0034070	B630019K06Rik (MGP_SPRETEiJ_G0034069) #13	Slc38a5 (MGP_SPRETEiJ_G0034068) #14	Ftsj1 (MGP_SPRETEiJ_G0034067) #15	Porcn (MGP_SPRETEiJ_G0034066) #16	Ebp (MGP_SPRETEiJ_G0034065) #17	Tbc1d25 (MGP_SPRETEiJ_G0034064) #18	Rbm3 (MGP_SPRETEiJ_G0034063) #19	Wdr13 (MGP_SPRETEiJ_G0034062) #20	Was (MGP_SPRETEiJ_G0034061) #21	Suv39h1 (MGP_SPRETEiJ_G0034060) #22	Glod5 (MGP_SPRETEiJ_G0034059) #23	Gata1 (MGP_SPRETEiJ_G0034058) #24	Hdac6 (MGP_SPRETEiJ_G0034057) #25	Eras (MGP_SPRETEiJ_G0034056) #26	Pcsk1n (MGP_SPRETEiJ_G0034055) #27	MGP_SPRETEiJ_G0034054	MGP_SPRETEiJ_G0034053	Timm17b (MGP_SPRETEiJ_G0034052) #29	Pqbp1 (MGP_SPRETEiJ_G0034051) #30	MGP_SPRETEiJ_G0034050 #31	Pim2 (MGP_SPRETEiJ_G0034049) #32	Otud5 (MGP_SPRETEiJ_G0034048) #33	Kcnd1 (MGP_SPRETEiJ_G0034047) #34	Gripap1 (MGP_SPRETEiJ_G0034046) #35	Tfe3 (MGP_SPRETEiJ_G0034045) #36
Steppe mouse	MODERN SPECIES	1042																Suv39h1 (ENSMSIG00000001933) #22
Shrew mouse	MODERN SPECIES	23	MGP_PahariEiJ_G0031475	H2ap (MGP_PahariEiJ_G0031474)	Dynlt3 (MGP_PahariEiJ_G0031473) #7	Cybb (MGP_PahariEiJ_G0031472) #8	MGP_PahariEiJ_G0031471	Lancl3 (MGP_PahariEiJ_G0031470) #11	B630019K06Rik (MGP_PahariEiJ_G0031469) #13	Slc38a5 (MGP_PahariEiJ_G0031468) #14	Ftsj1 (MGP_PahariEiJ_G0031467) #15	Porcn (MGP_PahariEiJ_G0031466) #16	Ebp (MGP_PahariEiJ_G0031465) #17	Tbc1d25 (MGP_PahariEiJ_G0031464) #18	Rbm3 (MGP_PahariEiJ_G0031463) #19	Wdr13 (MGP_PahariEiJ_G0031462) #20	Was (MGP_PahariEiJ_G0031461) #21	Suv39h1 (MGP_PahariEiJ_G0031460) #22	Glod5 (MGP_PahariEiJ_G0031459) #23	Gata1 (MGP_PahariEiJ_G0031458) #24	Hdac6 (MGP_PahariEiJ_G0031457) #25	Eras (MGP_PahariEiJ_G0031456) #26	Pcsk1n (MGP_PahariEiJ_G0031455) #27	MGP_PahariEiJ_G0031453	Pqbp1 (MGP_PahariEiJ_G0031451) #30	Slc35a2 (MGP_PahariEiJ_G0031450) #31	Pim2 (MGP_PahariEiJ_G0031449) #32	Otud5 (MGP_PahariEiJ_G0031448) #33	Kcnd1 (MGP_PahariEiJ_G0031447) #34	Gripap1 (MGP_PahariEiJ_G0031446) #35	Tfe3 (MGP_PahariEiJ_G0031445) #36	Ccdc120 (MGP_PahariEiJ_G0031444) #37	Praf2 (MGP_PahariEiJ_G0031443)
Rat	DUPLICATION
Rat	MODERN SPECIES	46	LOC120099305 (ENSRNOG00000063778)	LOC102552474 (ENSRNOG00000039615)	LOC120099271 (ENSRNOG00000066456)	LOC691895 (ENSRNOG00000063709)	ENSRNOG00000063832	RGD1560784 (ENSRNOG00000032522) #13	Ssx1 (ENSRNOG00000027850)	Slc38a5 (ENSRNOG00000027767) #14	Ftsj1 (ENSRNOG00000004776) #15	Porcn (ENSRNOG00000004819) #16	Ebp (ENSRNOG00000004903) #17	Tbc1d25 (ENSRNOG00000005303) #18	Rbm3 (ENSRNOG00000005387) #19	Wdr13 (ENSRNOG00000039587) #20	Was (ENSRNOG00000031058) #21	Suv39h1 (ENSRNOG00000039576) #22	Glod5 (ENSRNOG00000039571) #23	ENSRNOG00000064215	Gata1 (ENSRNOG00000047663) #24	Hdac6 (ENSRNOG00000048738) #25	Eras (ENSRNOG00000042470) #26	Pcsk1n (ENSRNOG00000046021) #27	Timm17b (ENSRNOG00000063664) #29	Pqbp1 (ENSRNOG00000007766) #30	Slc35a2 (ENSRNOG00000024801) #31	Pim2 (ENSRNOG00000008177) #32	Otud5 (ENSRNOG00000008764) #33	Kcnd1 (ENSRNOG00000039544) #34	Gripap1 (ENSRNOG00000009071) #35	Tfe3 (ENSRNOG00000009605) #36	Ccdc120 (ENSRNOG00000009687) #37
Rat	MODERN SPECIES	46	AABR07042418.1 (ENSRNOG00000051726)	ENSRNOG00000069396	Fam9c (ENSRNOG00000069253)	LOC100912196 (ENSRNOG00000062315)	AABR07042293.1 (ENSRNOG00000037381)	ENSRNOG00000067514	LOC689396 (ENSRNOG00000032418)	Slitrk2 (ENSRNOG00000011562)	LOC120099343 (ENSRNOG00000066658)	AABR07042226.1 (ENSRNOG00000058521)	Ctag2 (ENSRNOG00000012560)	Slitrk4 (ENSRNOG00000062783)	Magea9 (ENSRNOG00000023016)	AABR07042071.1 (ENSRNOG00000046097)	ENSRNOG00000067343	ENSRNOG00000063631 #22	AABR07041997.1 (ENSRNOG00000026227)	Magec2 (ENSRNOG00000026265)	LOC102546596 (ENSRNOG00000049579)	Ldoc1 (ENSRNOG00000003409)	ENSRNOG00000070217	AABR07041972.1 (ENSRNOG00000058507)	ENSRNOG00000063675	RGD1561327 (ENSRNOG00000031222)	Sox3 (ENSRNOG00000058173)	RGD1560585 (ENSRNOG00000070469)	RGD1560171 (ENSRNOG00000043487)	LOC688842 (ENSRNOG00000037399)	Atp11c (ENSRNOG00000003472)	Mcf2 (ENSRNOG00000003435)	F9 (ENSRNOG00000003430)