Murinae	ANCESTRAL SPECIES	6	ENSGT00940000155672	ENSGT00390000010722	ENSGT00390000003769 #8	ENSGT00940000155797 #9	ENSGT00940000155690 #11	ENSGT00390000010822 #12	ENSGT00940000157382 #13	ENSGT00390000013520 #14	ENSGT00390000009552 #15	ENSGT00840000129887 #16	ENSGT00390000018761 #17	ENSGT00940000160834 #18	ENSGT00390000000288 #19	ENSGT00940000156706 #20	ENSGT00390000008122 #21	ENSGT00940000156751 #22	ENSGT00940000160675 #23	ENSGT00390000010789 #24	ENSGT00550000074863 #25	ENSGT00940000153818.a.b.a.b #26	ENSGT00390000016675 #27	ENSGT00520000060616 #28	ENSGT00530000064879.h #29	ENSGT00530000064879.g #33	ENSGT01100000263482.C.c.a #34	ENSGT01100000263482.C.c.b.b.a.b #35	ENSGT01100000263482.C.c.b.a.b.a.n #36	ENSGT01100000263482.C.c.b.a.b.a.m #37	ENSGT01100000263482.D ##37	ENSGT00390000007247	ENSGT00940000156438
Mus	ANCESTRAL SPECIES	2	ENSGT00940000155672	ENSGT00390000010722	ENSGT00390000003769 #8	ENSGT00940000155797 #9	ENSGT00940000155690 #11	ENSGT00390000010822 #12	ENSGT00940000157382 #13	ENSGT00390000013520 #14	ENSGT00390000009552 #15	ENSGT00840000129887 #16	ENSGT00390000018761 #17	ENSGT00940000160834 #18	ENSGT00390000000288 #19	ENSGT00940000156706 #20	ENSGT00390000008122 #21	ENSGT00940000156751 #22	ENSGT00940000160675 #23	ENSGT00390000010789 #24	ENSGT00550000074863 #25	ENSGT00940000153818.a.b.a.b #26	ENSGT00390000016675 #27	ENSGT00520000060616 #28	ENSGT00530000064879.h #29	ENSGT00530000064879.g #33	ENSGT01100000263482.C.c.a #34	ENSGT01100000263482.C.c.b.b.a.b #35	ENSGT01100000263482.C.c.b.a.b.a.n #36	ENSGT01100000263482.C.c.b.a.b.a.m #37	ENSGT01100000263482.D ##37	ENSGT00390000007247	ENSGT00940000156438
Mus_A	ANCESTRAL SPECIES	2	ENSGT00940000155672	ENSGT00390000010722	ENSGT00390000003769 #8	ENSGT00940000155797 #9	ENSGT00940000155690 #11	ENSGT00390000010822 #12	ENSGT00940000157382 #13	ENSGT00390000013520 #14	ENSGT00390000009552 #15	ENSGT00840000129887 #16	ENSGT00390000018761 #17	ENSGT00940000160834 #18	ENSGT00390000000288 #19	ENSGT00940000156706 #20	ENSGT00390000008122 #21	ENSGT00940000156751 #22	ENSGT00940000160675 #23	ENSGT00390000010789 #24	ENSGT00550000074863 #25	ENSGT00940000153818.a.b.a.b #26	ENSGT00390000016675 #27	ENSGT00520000060616 #28	ENSGT00530000064879.h #29	ENSGT00530000064879.g.c #30	ENSGT01100000263482.C.c.a #34	ENSGT01100000263482.C.c.b.b.a.b #35	ENSGT01100000263482.C.c.b.a.b.a.n #36	ENSGT01100000263482.C.c.b.a.b.a.m #37	ENSGT01100000263482.D ##37	ENSGT00390000007247	ENSGT00940000156438
Mus_B	ANCESTRAL SPECIES	2	ENSGT00940000155672	ENSGT00390000010722	ENSGT00390000003769 #8	ENSGT00940000155797 #9	ENSGT00940000155690 #11	ENSGT00390000010822 #12	ENSGT00940000157382 #13	ENSGT00390000013520 #14	ENSGT00390000009552 #15	ENSGT00840000129887 #16	ENSGT00390000018761 #17	ENSGT00940000160834 #18	ENSGT00390000000288 #19	ENSGT00940000156706 #20	ENSGT00390000008122 #21	ENSGT00940000156751 #22	ENSGT00940000160675 #23	ENSGT00390000010789 #24	ENSGT00550000074863 #25	ENSGT00940000153818.a.b.a.b #26	ENSGT00390000016675 #27	ENSGT00520000060616 #28	ENSGT00530000064879.h #29	ENSGT00530000064879.g.c #30	ENSGT01100000263482.C.c.a #34	ENSGT01100000263482.C.c.b.b.a.b #35	ENSGT01100000263482.C.c.b.a.b.a.n #36	ENSGT01100000263482.C.c.b.a.b.a.m #37	ENSGT01100000263482.D ##37	ENSGT00390000007247	ENSGT00940000156438
Mus_C	ANCESTRAL SPECIES	3	ENSGT00940000155672	ENSGT00390000010722	ENSGT00390000003769 #8	ENSGT00940000155797 #9	ENSGT00940000155690 #11	ENSGT00390000010822 #12	ENSGT00940000157382 #13	ENSGT00390000013520 #14	ENSGT00390000009552 #15	ENSGT00840000129887 #16	ENSGT00390000018761 #17	ENSGT00940000160834 #18	ENSGT00390000000288 #19	ENSGT00940000156706 #20	ENSGT00390000008122 #21	ENSGT00940000156751 #22	ENSGT00940000160675 #23	ENSGT00390000010789 #24	ENSGT00550000074863 #25	ENSGT00940000153818.a.b.a.b #26	ENSGT00390000016675 #27	ENSGT00520000060616 #28	ENSGT00530000064879.h #29	ENSGT00530000064879.g.c #30	ENSGT01100000263482.C.c.a #34	ENSGT01100000263482.C.c.b.b.a.b #35	ENSGT01100000263482.C.c.b.a.b.a.n #36	ENSGT01100000263482.C.c.b.a.b.a.m #37	ENSGT01100000263482.D ##37	ENSGT00390000007247	ENSGT00940000156438
Steppe mouse	MODERN SPECIES	3305	ENSMSIG00000011045 #7	Chct1 (ENSMSIG00000011050) #8	Usp32 (ENSMSIG00000011103) #9	ENSMSIG00000011217 #10	Car4 (ENSMSIG00000011228) #11	Znhit3 (ENSMSIG00000011245) #12	Myo19 (ENSMSIG00000011255) #13	Pigw (ENSMSIG00000011294) #14	Ggnbp2 (ENSMSIG00000011309) #15	Dhrs11 (ENSMSIG00000011441) #16	Mrm1 (ENSMSIG00000011460) #17	Lhx1 (ENSMSIG00000011492) #18	Aatf (ENSMSIG00000011523) #19	Acaca (ENSMSIG00000011559) #20	Gm11437 (ENSMSIG00000011800) #21	Tada2a (ENSMSIG00000011818) #22	Dusp14 (ENSMSIG00000011867) #23	Synrg (ENSMSIG00000011874) #24	Ddx52 (ENSMSIG00000012043) #25	Hnf1b (ENSMSIG00000012071) #26	Heatr6 (ENSMSIG00000012205) #27	Wfdc21 (ENSMSIG00000012277) #28	Wfdc18 (ENSMSIG00000012297) #29	Wfdc17 (ENSMSIG00000012316) #30	ENSMSIG00000012323 #31	ENSMSIG00000012332 #32	ENSMSIG00000012344 #33	Ccl4 (ENSMSIG00000012352) #34	Ccl3 (ENSMSIG00000012367) #35	Ccl6 (ENSMSIG00000012387) #36	Ccl9 (ENSMSIG00000012396) #37
spretus	MODERN SPECIES	2	Ppm1d (MGP_SPRETEiJ_G0017751)	MGP_SPRETEiJ_G0017750	Chct1 (MGP_SPRETEiJ_G0017749) #8	Usp32 (MGP_SPRETEiJ_G0017748) #9	Car4 (MGP_SPRETEiJ_G0017747) #11	Znhit3 (MGP_SPRETEiJ_G0017746) #12	Myo19 (MGP_SPRETEiJ_G0017745) #13	Pigw (MGP_SPRETEiJ_G0017744) #14	Ggnbp2 (MGP_SPRETEiJ_G0017743) #15	Dhrs11 (MGP_SPRETEiJ_G0017742) #16	Mrm1 (MGP_SPRETEiJ_G0017741) #17	Lhx1 (MGP_SPRETEiJ_G0017740) #18	Aatf (MGP_SPRETEiJ_G0017739) #19	Gm11437 (MGP_SPRETEiJ_G0017738) #21	Acaca (MGP_SPRETEiJ_G0017737) #20	Tada2a (MGP_SPRETEiJ_G0017736) #22	Dusp14 (MGP_SPRETEiJ_G0017735) #23	Synrg (MGP_SPRETEiJ_G0017734) #24	Ddx52 (MGP_SPRETEiJ_G0017733) #25	Hnf1b (MGP_SPRETEiJ_G0017732) #26	Heatr6 (MGP_SPRETEiJ_G0017731) #27	Wfdc21 (MGP_SPRETEiJ_G0017730) #28	Wfdc18 (MGP_SPRETEiJ_G0017729) #29	Wfdc17 (MGP_SPRETEiJ_G0017728) #30	Ccl4 (MGP_SPRETEiJ_G0017727) #34	Ccl3 (MGP_SPRETEiJ_G0017726) #35	MGP_SPRETEiJ_G0017725	Ccl6 (MGP_SPRETEiJ_G0017724) #36	Ccl9 (MGP_SPRETEiJ_G0017723) #37	Ccl5 (MGP_SPRETEiJ_G0017722) ##37	Heatr9 (MGP_SPRETEiJ_G0017721)
Mouse	MODERN SPECIES	2	Ppm1d (ENSMUSG00000020525)	Appbp2 (ENSMUSG00000018481)	Chct1 (ENSMUSG00000018479) #8	Usp32 (ENSMUSG00000000804) #9	Car4 (ENSMUSG00000000805) #11	Znhit3 (ENSMUSG00000020526) #12	Myo19 (ENSMUSG00000020527) #13	Pigw (ENSMUSG00000045140) #14	Ggnbp2 (ENSMUSG00000020530) #15	Dhrs11 (ENSMUSG00000034449) #16	Mrm1 (ENSMUSG00000018405) #17	Lhx1 (ENSMUSG00000018698) #18	Aatf (ENSMUSG00000018697) #19	Gm11437 (ENSMUSG00000051452) #21	Acaca (ENSMUSG00000020532) #20	Tada2a (ENSMUSG00000018651) #22	Dusp14 (ENSMUSG00000018648) #23	Synrg (ENSMUSG00000034940) #24	Ddx52 (ENSMUSG00000020677) #25	Hnf1b (ENSMUSG00000020679) #26	Heatr6 (ENSMUSG00000000976) #27	Wfdc21 (ENSMUSG00000051748) #28	Wfdc18 (ENSMUSG00000000983) #29	Wfdc17 (ENSMUSG00000069792) #30	Ccl4 (ENSMUSG00000018930) #34	Ccl3 (ENSMUSG00000000982) #35	Ccl6 (ENSMUSG00000018927) #36	Ccl9 (ENSMUSG00000019122) #37	Ccl5 (ENSMUSG00000035042) ##37	Heatr9 (ENSMUSG00000018925)	Taf15 (ENSMUSG00000020680)
Ryukyu mouse	MODERN SPECIES	2	Ppm1d (MGP_CAROLIEiJ_G0016906)	Appbp2 (MGP_CAROLIEiJ_G0016905)	Chct1 (MGP_CAROLIEiJ_G0016904) #8	Usp32 (MGP_CAROLIEiJ_G0016903) #9	Car4 (MGP_CAROLIEiJ_G0016902) #11	Znhit3 (MGP_CAROLIEiJ_G0016901) #12	Myo19 (MGP_CAROLIEiJ_G0016900) #13	Pigw (MGP_CAROLIEiJ_G0016899) #14	Ggnbp2 (MGP_CAROLIEiJ_G0016898) #15	Dhrs11 (MGP_CAROLIEiJ_G0016897) #16	Mrm1 (MGP_CAROLIEiJ_G0016896) #17	Lhx1 (MGP_CAROLIEiJ_G0016895) #18	Aatf (MGP_CAROLIEiJ_G0016894) #19	Gm11437 (MGP_CAROLIEiJ_G0016893) #21	Acaca (MGP_CAROLIEiJ_G0016892) #20	Tada2a (MGP_CAROLIEiJ_G0016891) #22	Dusp14 (MGP_CAROLIEiJ_G0016890) #23	Synrg (MGP_CAROLIEiJ_G0016889) #24	Ddx52 (MGP_CAROLIEiJ_G0016888) #25	Hnf1b (MGP_CAROLIEiJ_G0016887) #26	Heatr6 (MGP_CAROLIEiJ_G0016886) #27	Wfdc21 (MGP_CAROLIEiJ_G0016885) #28	Wfdc18 (MGP_CAROLIEiJ_G0016884) #29	Wfdc17 (MGP_CAROLIEiJ_G0016883) #30	Ccl4 (MGP_CAROLIEiJ_G0016882) #34	Ccl3 (MGP_CAROLIEiJ_G0016881) #35	Ccl6 (MGP_CAROLIEiJ_G0016880) #36	Ccl9 (MGP_CAROLIEiJ_G0016879) #37	Ccl5 (MGP_CAROLIEiJ_G0016878) ##37	Heatr9 (MGP_CAROLIEiJ_G0016877)	Taf15 (MGP_CAROLIEiJ_G0016876)
Shrew mouse	MODERN SPECIES	5	Ppm1d (MGP_PahariEiJ_G0018036)	Appbp2 (MGP_PahariEiJ_G0018035)	Chct1 (MGP_PahariEiJ_G0018034) #8	Usp32 (MGP_PahariEiJ_G0018033) #9	Car4 (MGP_PahariEiJ_G0018032) #11	Znhit3 (MGP_PahariEiJ_G0018031) #12	Myo19 (MGP_PahariEiJ_G0018030) #13	Pigw (MGP_PahariEiJ_G0018029) #14	Ggnbp2 (MGP_PahariEiJ_G0018028) #15	Dhrs11 (MGP_PahariEiJ_G0018027) #16	Mrm1 (MGP_PahariEiJ_G0018026) #17	Lhx1 (MGP_PahariEiJ_G0018025) #18	Aatf (MGP_PahariEiJ_G0018024) #19	Gm11437 (MGP_PahariEiJ_G0018023) #21	Acaca (MGP_PahariEiJ_G0018022) #20	Tada2a (MGP_PahariEiJ_G0018021) #22	Dusp14 (MGP_PahariEiJ_G0018020) #23	Synrg (MGP_PahariEiJ_G0018019) #24	Ddx52 (MGP_PahariEiJ_G0018018) #25	Hnf1b (MGP_PahariEiJ_G0018017) #26	Heatr6 (MGP_PahariEiJ_G0018016) #27	Wfdc21 (MGP_PahariEiJ_G0018015) #28	Ccl4 (MGP_PahariEiJ_G0018013) #34	Ccl3 (MGP_PahariEiJ_G0018012) #35	Ccl6 (MGP_PahariEiJ_G0018011) #36	Ccl9 (MGP_PahariEiJ_G0018010) #37	Ccl5 (MGP_PahariEiJ_G0018009) ##37	Heatr9 (MGP_PahariEiJ_G0018008)	Taf15 (MGP_PahariEiJ_G0018007)	Mmp28 (MGP_PahariEiJ_G0018006)	1700020L24Rik (MGP_PahariEiJ_G0018005)
Rat	MODERN SPECIES	1	ENSRNOG00000069734	Usp32 (ENSRNOG00000027711) #9	ENSRNOG00000067083	Car4 (ENSRNOG00000002916) #11	Znhit3 (ENSRNOG00000063476) #12	Myo19 (ENSRNOG00000002852) #13	Pigw (ENSRNOG00000027857) #14	Ggnbp2 (ENSRNOG00000027860) #15	Ube2i (ENSRNOG00000017907)	Dhrs11 (ENSRNOG00000027891) #16	Mrm1 (ENSRNOG00000027901) #17	Lhx1 (ENSRNOG00000002812) #18	Aatf (ENSRNOG00000002778) #19	LOC102552988 (ENSRNOG00000028116) #21	Acaca (ENSRNOG00000034013) #20	Tada2a (ENSRNOG00000002757) #22	Dusp14 (ENSRNOG00000030091) #23	Ac1576 (ENSRNOG00000058372)	Synrg (ENSRNOG00000053814) #24	Ddx52 (ENSRNOG00000002612) #25	Hnf1b (ENSRNOG00000002598) #26	Heatr6 (ENSRNOG00000002542) #27	Wfdc21 (ENSRNOG00000029668) #28	AABR07030143.1 (ENSRNOG00000057390) #29	Wfdc18 (ENSRNOG00000037097) #33	ENSRNOG00000067505	Anos1 (ENSRNOG00000002497) #33	ENSRNOG00000066744	LOC100909660 (ENSRNOG00000066869) #33	LOC103695128 (ENSRNOG00000051084)	ENSRNOG00000070672