Glires	ANCESTRAL SPECIES	3	ENSGT00940000155672 #9	ENSGT00390000010722 #10	ENSGT00390000003769 #11	ENSGT00940000155797 #12	ENSGT00940000155690 #13	ENSGT00390000010822 #14	ENSGT00940000157382 #15	ENSGT00390000013520	ENSGT00390000009552 #16	ENSGT00840000129887 #17	ENSGT00390000018761 #18	ENSGT00940000160834 #19	ENSGT00390000000288	ENSGT00940000156706 #21	ENSGT00390000008122	ENSGT00940000156751 #22	ENSGT00940000160675 #23	ENSGT00390000010789 #24	ENSGT00550000074863 #25	ENSGT00940000153818.a.b.a.b #26	ENSGT00390000016675 #27	ENSGT00520000060616 #28	ENSGT00530000064879	ENSGT01100000263482.C.c.a #29	ENSGT01100000263482.C.c.b.b.a.b ##29	ENSGT00940000165476	ENSGT01100000263482.C.c.b.a.a ##29	ENSGT01100000263482.C.c.b.a.b.a ##29	ENSGT01100000263482.C.c.b.a.b.b ##29	ENSGT01100000263482.B ##29	ENSGT01100000263482.D #30
Rodentia	ANCESTRAL SPECIES	4	ENSGT00940000155672 #9	ENSGT00390000010722 #10	ENSGT00390000003769 #11	ENSGT00940000155797 #12	ENSGT00940000155690 #13	ENSGT00390000010822 #14	ENSGT00940000157382 #15	ENSGT00390000013520	ENSGT00390000009552 #16	ENSGT00840000129887 #17	ENSGT00390000018761 #18	ENSGT00940000160834 #19	ENSGT00390000000288	ENSGT00940000156706 #21	ENSGT00390000008122	ENSGT00940000156751 #22	ENSGT00940000160675 #23	ENSGT00390000010789 #24	ENSGT00550000074863 #25	ENSGT00940000153818.a.b.a.b #26	ENSGT00390000016675 #27	ENSGT00520000060616 #28	ENSGT00530000064879	ENSGT01100000263482.C.c.a #29	ENSGT01100000263482.C.c.b.b.a.b ##29	ENSGT00940000165476	ENSGT01100000263482.C.c.b.a.a ##29	ENSGT01100000263482.C.c.b.a.b.a ##29	ENSGT01100000263482.C.c.b.a.b.b ##29	ENSGT01100000263482.B ##29	ENSGT01100000263482.D #30
Rodentia_B	ANCESTRAL SPECIES	1	ENSGT00940000155672 #9	ENSGT00390000010722 #10	ENSGT00390000003769 #11	ENSGT00940000155797 #12	ENSGT00940000155690 #13	ENSGT00390000010822 #14	ENSGT00940000157382 #15	ENSGT00390000013520	ENSGT00390000009552 #16	ENSGT00840000129887 #17	ENSGT00390000018761 #18	ENSGT00940000160834 #19	ENSGT00390000000288	ENSGT00940000156706 #21	ENSGT00390000008122	ENSGT00940000156751 #22	ENSGT00940000160675 #23	ENSGT00390000010789 #24	ENSGT00550000074863 #25	ENSGT00940000153818.a.b.a.b #26	ENSGT00390000016675 #27	ENSGT00520000060616 #28	ENSGT00530000064879	ENSGT01100000263482.C.c.a #29	ENSGT01100000263482.C.c.b.b.a.b ##29	ENSGT01100000263482.C.c.b.a.b.a ##29	ENSGT00940000165476	ENSGT01100000263482.D #30	ENSGT00390000007247 #31	ENSGT00940000156438 #32	ENSGT00940000159596 #33
Kangaroo rat	MODERN SPECIES	338	Tbx2 (ENSDORG00000024193) #7	Bcas3 (ENSDORG00000004366) #8	Ppm1d (ENSDORG00000004364) #9	Appbp2 (ENSDORG00000025450) #10	Chct1 (ENSDORG00000013035) #11	Usp32 (ENSDORG00000016159) #12	Car4 (ENSDORG00000007143) #13	Znhit3 (ENSDORG00000029572) #14	Myo19 (ENSDORG00000012276) #15	Ggnbp2 (ENSDORG00000013265) #16	Dhrs11 (ENSDORG00000013266) #17	Mrm1 (ENSDORG00000013267) #18	Lhx1 (ENSDORG00000006956) #19	ENSDORG00000006957 #20	Acaca (ENSDORG00000006958) #21	Tada2a (ENSDORG00000009547) #22	Dusp14 (ENSDORG00000025341) #23	Synrg (ENSDORG00000004275) #24	Ddx52 (ENSDORG00000004276) #25	Hnf1b (ENSDORG00000009669) #26	Heatr6 (ENSDORG00000011214) #27	Wfdc21 (ENSDORG00000024216) #28	Ccl4 (ENSDORG00000026295) #29	Ccl5 (ENSDORG00000007688) #30	ENSDORG00000003141 #31	Taf15 (ENSDORG00000014619) #32	Mmp28 (ENSDORG00000003809) #33	1700020L24Rik (ENSDORG00000003808) #34	ENSDORG00000026155 #35	Rasl10b (ENSDORG00000003805) #36	Ap2b1 (ENSDORG00000003803) #37
Myomorpha	ANCESTRAL SPECIES		ENSGT00940000155672 #9	ENSGT00390000010722 #10	ENSGT00390000003769 #11	ENSGT00940000155797 #12	ENSGT00940000155690 #13	ENSGT00390000010822 #14	ENSGT00940000157382 #15	ENSGT00390000013520	ENSGT00390000009552 #16	ENSGT00840000129887 #17	ENSGT00390000018761 #18	ENSGT00940000160834 #19	ENSGT00390000000288	ENSGT00940000156706 #21	ENSGT00390000008122	ENSGT00940000156751 #22	ENSGT00940000160675 #23	ENSGT00390000010789 #24	ENSGT00550000074863 #25	ENSGT00940000153818.a.b.a.b #26	ENSGT00390000016675 #27	ENSGT00520000060616 #28	ENSGT00530000064879	ENSGT01100000263482.C.c.a #29	ENSGT01100000263482.C.c.b.b.a.b ##29	ENSGT01100000263482.C.c.b.a.b.a ##29	ENSGT00940000165476	ENSGT01100000263482.D #30	ENSGT00390000007247 #31	ENSGT00940000156438 #32	ENSGT00940000159596 #33
Muroidea	ANCESTRAL SPECIES		ENSGT00940000155672 #9	ENSGT00390000010722 #10	ENSGT00390000003769 #11	ENSGT00940000155797 #12	ENSGT00940000155690 #13	ENSGT00390000010822 #14	ENSGT00940000157382 #15	ENSGT00390000013520	ENSGT00390000009552 #16	ENSGT00840000129887 #17	ENSGT00390000018761 #18	ENSGT00940000160834 #19	ENSGT00390000000288	ENSGT00940000156706 #21	ENSGT00390000008122	ENSGT00940000156751 #22	ENSGT00940000160675 #23	ENSGT00390000010789 #24	ENSGT00550000074863 #25	ENSGT00940000153818.a.b.a.b #26	ENSGT00390000016675 #27	ENSGT00520000060616 #28	ENSGT00530000064879	ENSGT01100000263482.C.c.a #29	ENSGT01100000263482.C.c.b.b.a.b ##29	ENSGT00940000165476	ENSGT01100000263482.C.c.b.a.b.a ##29	ENSGT01100000263482.D #30	ENSGT00390000007247 #31	ENSGT00940000156438 #32	ENSGT00940000159596 #33
Muroidea_A	ANCESTRAL SPECIES	1	ENSGT00940000155672 #9	ENSGT00390000010722 #10	ENSGT00390000003769 #11	ENSGT00940000155797 #12	ENSGT00940000155690 #13	ENSGT00390000010822 #14	ENSGT00940000157382 #15	ENSGT00390000013520	ENSGT00390000009552 #16	ENSGT00840000129887 #17	ENSGT00390000018761 #18	ENSGT00940000160834 #19	ENSGT00390000000288	ENSGT00940000156706 #21	ENSGT00390000008122	ENSGT00940000156751 #22	ENSGT00940000160675 #23	ENSGT00390000010789 #24	ENSGT00550000074863 #25	ENSGT00940000153818.a.b.a.b #26	ENSGT00390000016675 #27	ENSGT00520000060616 #28	ENSGT00530000064879	ENSGT01100000263482.C.c.a #29	ENSGT01100000263482.C.c.b.b.a.b ##29	ENSGT01100000263482.C.c.b.a.b.a.n ##29	ENSGT01100000263482.C.c.b.a.b.a.m ##29	ENSGT01100000263482.D #30	ENSGT00390000007247 #31	ENSGT00940000156438 #32	ENSGT00940000159596 #33
Cricetidae	ANCESTRAL SPECIES		ENSGT00940000155672 #9	ENSGT00390000010722 #10	ENSGT00390000003769 #11	ENSGT00940000155797 #12	ENSGT00940000155690 #13	ENSGT00390000010822 #14	ENSGT00940000157382 #15	ENSGT00390000013520	ENSGT00390000009552 #16	ENSGT00840000129887 #17	ENSGT00390000018761 #18	ENSGT00940000160834 #19	ENSGT00390000000288	ENSGT00940000156706 #21	ENSGT00390000008122	ENSGT00940000156751 #22	ENSGT00940000160675 #23	ENSGT00390000010789 #24	ENSGT00550000074863 #25	ENSGT00940000153818.a.b.a.b #26	ENSGT00390000016675 #27	ENSGT00520000060616 #28	ENSGT00530000064879.e	ENSGT01100000263482.C.c.a #29	ENSGT01100000263482.C.c.b.b.a.b ##29	ENSGT01100000263482.C.c.b.a.b.a.n ##29	ENSGT01100000263482.C.c.b.a.b.a.m ##29	ENSGT01100000263482.D #30	ENSGT00390000007247 #31	ENSGT00940000156438 #32	ENSGT00940000159596 #33
Cricetidae_B	ANCESTRAL SPECIES		ENSGT00940000155672 #9	ENSGT00390000010722 #10	ENSGT00390000003769 #11	ENSGT00940000155797 #12	ENSGT00940000155690 #13	ENSGT00390000010822 #14	ENSGT00940000157382 #15	ENSGT00390000013520	ENSGT00390000009552 #16	ENSGT00840000129887 #17	ENSGT00390000018761 #18	ENSGT00940000160834 #19	ENSGT00390000000288	ENSGT00940000156706 #21	ENSGT00390000008122	ENSGT00940000156751 #22	ENSGT00940000160675 #23	ENSGT00390000010789 #24	ENSGT00550000074863 #25	ENSGT00940000153818.a.b.a.b #26	ENSGT00390000016675 #27	ENSGT00520000060616 #28	ENSGT00530000064879.e	ENSGT01100000263482.C.c.a #29	ENSGT01100000263482.C.c.b.b.a.b ##29	ENSGT01100000263482.C.c.b.a.b.a.n ##29	ENSGT01100000263482.C.c.b.a.b.a.m ##29	ENSGT01100000263482.D #30	ENSGT00390000007247 #31	ENSGT00940000156438 #32	ENSGT00940000159596 #33
Prairie vole	MODERN SPECIES	15	Snn (ENSMOCG00000015655)	Txndc11 (ENSMOCG00000016648)	Zc3h7a (ENSMOCG00000016255)	Rsl1d1 (ENSMOCG00000017724)	Gspt1 (ENSMOCG00000019604)	Tnfrsf17 (ENSMOCG00000013695)	Snx29 (ENSMOCG00000006809)	ENSMOCG00000021741	Cpped1 (ENSMOCG00000002062)	Shisa9 (ENSMOCG00000022752)	ENSMOCG00000021004	Lhx1 (ENSMOCG00000012864) #19	Aatf (ENSMOCG00000021199)	Acaca (ENSMOCG00000006469) #21	Gm11437 (ENSMOCG00000015056)	Tada2a (ENSMOCG00000007050) #22	Dusp14 (ENSMOCG00000011337) #23	Synrg (ENSMOCG00000021006) #24	Ddx52 (ENSMOCG00000009654) #25	Hnf1b (ENSMOCG00000012217) #26	Heatr6 (ENSMOCG00000015431) #27	Wfdc21 (ENSMOCG00000019007) #28	ENSMOCG00000016372	ENSMOCG00000013687	Ccl4 (ENSMOCG00000012149) #29	ENSMOCG00000013583 ##29	ENSMOCG00000012772	ENSMOCG00000002418	Ccl5 (ENSMOCG00000020386) #30	Heatr9 (ENSMOCG00000009616) #31	Taf15 (ENSMOCG00000015121) #32
Northern American deer mouse	MODERN SPECIES	21	Ppm1d (ENSPEMG00000023276) #9	Appbp2 (ENSPEMG00000022734) #10	Chct1 (ENSPEMG00000003353) #11	Usp32 (ENSPEMG00000004467) #12	Car4 (ENSPEMG00000010937) #13	Znhit3 (ENSPEMG00000028356) #14	Myo19 (ENSPEMG00000022948) #15	Pigw (ENSPEMG00000023553)	Ggnbp2 (ENSPEMG00000022930) #16	Dhrs11 (ENSPEMG00000021946) #17	Mrm1 (ENSPEMG00000030596) #18	Lhx1 (ENSPEMG00000024834) #19	Aatf (ENSPEMG00000022006)	Acaca (ENSPEMG00000023800) #21	Gm11437 (ENSPEMG00000021648)	Tada2a (ENSPEMG00000022544) #22	Dusp14 (ENSPEMG00000030837) #23	Synrg (ENSPEMG00000025919) #24	Ddx52 (ENSPEMG00000003263) #25	Hnf1b (ENSPEMG00000023625) #26	Heatr6 (ENSPEMG00000022934) #27	Wfdc21 (ENSPEMG00000025133) #28	ENSPEMG00000021537 #29	ENSPEMG00000021998	ENSPEMG00000022266	ENSPEMG00000026902 #29	ENSPEMG00000028019 #29	ENSPEMG00000025016 #29	ENSPEMG00000027305 #29	ENSPEMG00000026681	ENSPEMG00000030825 #29
Cricetinae	ANCESTRAL SPECIES		ENSGT00940000155672 #9	ENSGT00390000010722 #10	ENSGT00390000003769 #11	ENSGT00940000155797 #12	ENSGT00940000155690 #13	ENSGT00390000010822 #14	ENSGT00940000157382 #15	ENSGT00390000013520	ENSGT00390000009552 #16	ENSGT00840000129887 #17	ENSGT00390000018761 #18	ENSGT00940000160834 #19	ENSGT00390000000288	ENSGT00940000156706 #21	ENSGT00390000008122	ENSGT00940000156751 #22	ENSGT00940000160675 #23	ENSGT00390000010789 #24	ENSGT00550000074863 #25	ENSGT00940000153818.a.b.a.b #26	ENSGT00390000016675 #27	ENSGT00520000060616 #28	ENSGT00530000064879.f	ENSGT00530000064879.e	ENSGT01100000263482.C.c.a #29	ENSGT01100000263482.C.c.b.b.a.b ##29	ENSGT01100000263482.C.c.b.a.b.a.n ##29	ENSGT00940000165476.c	ENSGT00940000165476.d	ENSGT01100000263482.D #30	ENSGT00390000007247 #31
Chinese hamster chok1gshd	MODERN SPECIES	33	Chct1 (ENSCGRG00001006750) #11	ENSCGRG00001023587	ENSCGRG00001013461	Usp32 (ENSCGRG00001020062) #12	Car4 (ENSCGRG00001008651) #13	ENSCGRG00001019811 #14	Myo19 (ENSCGRG00001016014) #15	Pigw (ENSCGRG00001001433)	Ggnbp2 (ENSCGRG00001004400) #16	Dhrs11 (ENSCGRG00001017376) #17	Mrm1 (ENSCGRG00001001937) #18	Lhx1 (ENSCGRG00001018330) #19	Aatf (ENSCGRG00001005527)	Gm11437 (ENSCGRG00001012632)	Acaca (ENSCGRG00001022253) #21	Tada2a (ENSCGRG00001018460) #22	Dusp14 (ENSCGRG00001010127) #23	Synrg (ENSCGRG00001021744) #24	Ddx52 (ENSCGRG00001020695) #25	Hnf1b (ENSCGRG00001022328) #26	Heatr6 (ENSCGRG00001000753) #27	Wfdc21 (ENSCGRG00001020449) #28	ENSCGRG00001019205	ENSCGRG00001018407	Ccl4 (ENSCGRG00001020791) #29	Ccl3 (ENSCGRG00001019421) ##29	Ccl6 (ENSCGRG00001008290) ##29	ENSCGRG00001017750	Ccl5 (ENSCGRG00001017129) #30	Heatr9 (ENSCGRG00001019308) #31	Taf15 (ENSCGRG00001012011) #32
Golden Hamster	MODERN SPECIES	684	Ppm1d (ENSMAUG00000021070) #9	Appbp2 (ENSMAUG00000017006) #10	ENSMAUG00000000696 #11	Usp32 (ENSMAUG00000021723) #12	Car4 (ENSMAUG00000008867) #13	Znhit3 (ENSMAUG00000015879) #14	Myo19 (ENSMAUG00000008695) #15	Pigw (ENSMAUG00000022126)	Ggnbp2 (ENSMAUG00000020953) #16	Dhrs11 (ENSMAUG00000011459) #17	Mrm1 (ENSMAUG00000020976) #18	Lhx1 (ENSMAUG00000003621) #19	Aatf (ENSMAUG00000004548)	Acaca (ENSMAUG00000017414) #21	Gm11437 (ENSMAUG00000013814)	Tada2a (ENSMAUG00000009253) #22	Dusp14 (ENSMAUG00000015817) #23	Synrg (ENSMAUG00000015507) #24	Ddx52 (ENSMAUG00000021084) #25	ENSMAUG00000007943	Hnf1b (ENSMAUG00000009573) #26	Heatr6 (ENSMAUG00000009627) #27	Wfdc21 (ENSMAUG00000018673) #28	ENSMAUG00000009975	Ccl4 (ENSMAUG00000020742) #29	Ccl3 (ENSMAUG00000021167) ##29	ENSMAUG00000015635	ENSMAUG00000021412	Ccl5 (ENSMAUG00000000781) #30	Heatr9 (ENSMAUG00000019408) #31	ENSMAUG00000018386 #32
Murinae	ANCESTRAL SPECIES	6	ENSGT00940000155672 #9	ENSGT00390000010722 #10	ENSGT00390000003769 #11	ENSGT00940000155797 #12	ENSGT00940000155690 #13	ENSGT00390000010822 #14	ENSGT00940000157382 #15	ENSGT00390000013520	ENSGT00390000009552 #16	ENSGT00840000129887 #17	ENSGT00390000018761 #18	ENSGT00940000160834 #19	ENSGT00390000000288	ENSGT00940000156706 #21	ENSGT00390000008122	ENSGT00940000156751 #22	ENSGT00940000160675 #23	ENSGT00390000010789 #24	ENSGT00550000074863 #25	ENSGT00940000153818.a.b.a.b #26	ENSGT00390000016675 #27	ENSGT00520000060616 #28	ENSGT00530000064879.h	ENSGT00530000064879.g	ENSGT01100000263482.C.c.a #29	ENSGT01100000263482.C.c.b.b.a.b ##29	ENSGT01100000263482.C.c.b.a.b.a.n ##29	ENSGT01100000263482.C.c.b.a.b.a.m ##29	ENSGT01100000263482.D #30	ENSGT00390000007247 #31	ENSGT00940000156438 #32
Mus	ANCESTRAL SPECIES	2	ENSGT00940000155672 #9	ENSGT00390000010722 #10	ENSGT00390000003769 #11	ENSGT00940000155797 #12	ENSGT00940000155690 #13	ENSGT00390000010822 #14	ENSGT00940000157382 #15	ENSGT00390000013520	ENSGT00390000009552 #16	ENSGT00840000129887 #17	ENSGT00390000018761 #18	ENSGT00940000160834 #19	ENSGT00390000000288	ENSGT00940000156706 #21	ENSGT00390000008122	ENSGT00940000156751 #22	ENSGT00940000160675 #23	ENSGT00390000010789 #24	ENSGT00550000074863 #25	ENSGT00940000153818.a.b.a.b #26	ENSGT00390000016675 #27	ENSGT00520000060616 #28	ENSGT00530000064879.h	ENSGT00530000064879.g	ENSGT01100000263482.C.c.a #29	ENSGT01100000263482.C.c.b.b.a.b ##29	ENSGT01100000263482.C.c.b.a.b.a.n ##29	ENSGT01100000263482.C.c.b.a.b.a.m ##29	ENSGT01100000263482.D #30	ENSGT00390000007247 #31	ENSGT00940000156438 #32
Mus_A	ANCESTRAL SPECIES	2	ENSGT00940000155672 #9	ENSGT00390000010722 #10	ENSGT00390000003769 #11	ENSGT00940000155797 #12	ENSGT00940000155690 #13	ENSGT00390000010822 #14	ENSGT00940000157382 #15	ENSGT00390000013520	ENSGT00390000009552 #16	ENSGT00840000129887 #17	ENSGT00390000018761 #18	ENSGT00940000160834 #19	ENSGT00390000000288	ENSGT00940000156706 #21	ENSGT00390000008122	ENSGT00940000156751 #22	ENSGT00940000160675 #23	ENSGT00390000010789 #24	ENSGT00550000074863 #25	ENSGT00940000153818.a.b.a.b #26	ENSGT00390000016675 #27	ENSGT00520000060616 #28	ENSGT00530000064879.h	ENSGT00530000064879.g.c	ENSGT01100000263482.C.c.a #29	ENSGT01100000263482.C.c.b.b.a.b ##29	ENSGT01100000263482.C.c.b.a.b.a.n ##29	ENSGT01100000263482.C.c.b.a.b.a.m ##29	ENSGT01100000263482.D #30	ENSGT00390000007247 #31	ENSGT00940000156438 #32
Mus_B	ANCESTRAL SPECIES	2	ENSGT00940000155672 #9	ENSGT00390000010722 #10	ENSGT00390000003769 #11	ENSGT00940000155797 #12	ENSGT00940000155690 #13	ENSGT00390000010822 #14	ENSGT00940000157382 #15	ENSGT00390000013520	ENSGT00390000009552 #16	ENSGT00840000129887 #17	ENSGT00390000018761 #18	ENSGT00940000160834 #19	ENSGT00390000000288	ENSGT00940000156706 #21	ENSGT00390000008122	ENSGT00940000156751 #22	ENSGT00940000160675 #23	ENSGT00390000010789 #24	ENSGT00550000074863 #25	ENSGT00940000153818.a.b.a.b #26	ENSGT00390000016675 #27	ENSGT00520000060616 #28	ENSGT00530000064879.h	ENSGT00530000064879.g.c	ENSGT01100000263482.C.c.a #29	ENSGT01100000263482.C.c.b.b.a.b ##29	ENSGT01100000263482.C.c.b.a.b.a.n ##29	ENSGT01100000263482.C.c.b.a.b.a.m ##29	ENSGT01100000263482.D #30	ENSGT00390000007247 #31	ENSGT00940000156438 #32
Mouse	MODERN SPECIES	2	Ppm1d (ENSMUSG00000020525) #9	Appbp2 (ENSMUSG00000018481) #10	Chct1 (ENSMUSG00000018479) #11	Usp32 (ENSMUSG00000000804) #12	Car4 (ENSMUSG00000000805) #13	Znhit3 (ENSMUSG00000020526) #14	Myo19 (ENSMUSG00000020527) #15	Pigw (ENSMUSG00000045140)	Ggnbp2 (ENSMUSG00000020530) #16	Dhrs11 (ENSMUSG00000034449) #17	Mrm1 (ENSMUSG00000018405) #18	Lhx1 (ENSMUSG00000018698) #19	Aatf (ENSMUSG00000018697)	Gm11437 (ENSMUSG00000051452)	Acaca (ENSMUSG00000020532) #21	Tada2a (ENSMUSG00000018651) #22	Dusp14 (ENSMUSG00000018648) #23	Synrg (ENSMUSG00000034940) #24	Ddx52 (ENSMUSG00000020677) #25	Hnf1b (ENSMUSG00000020679) #26	Heatr6 (ENSMUSG00000000976) #27	Wfdc21 (ENSMUSG00000051748) #28	Wfdc18 (ENSMUSG00000000983)	Wfdc17 (ENSMUSG00000069792)	Ccl4 (ENSMUSG00000018930) #29	Ccl3 (ENSMUSG00000000982) ##29	Ccl6 (ENSMUSG00000018927) ##29	Ccl9 (ENSMUSG00000019122) ##29	Ccl5 (ENSMUSG00000035042) #30	Heatr9 (ENSMUSG00000018925) #31	Taf15 (ENSMUSG00000020680) #32
Mus_C	ANCESTRAL SPECIES	3	ENSGT00940000155672 #9	ENSGT00390000010722 #10	ENSGT00390000003769 #11	ENSGT00940000155797 #12	ENSGT00940000155690 #13	ENSGT00390000010822 #14	ENSGT00940000157382 #15	ENSGT00390000013520	ENSGT00390000009552 #16	ENSGT00840000129887 #17	ENSGT00390000018761 #18	ENSGT00940000160834 #19	ENSGT00390000000288	ENSGT00940000156706 #21	ENSGT00390000008122	ENSGT00940000156751 #22	ENSGT00940000160675 #23	ENSGT00390000010789 #24	ENSGT00550000074863 #25	ENSGT00940000153818.a.b.a.b #26	ENSGT00390000016675 #27	ENSGT00520000060616 #28	ENSGT00530000064879.h	ENSGT00530000064879.g.c	ENSGT01100000263482.C.c.a #29	ENSGT01100000263482.C.c.b.b.a.b ##29	ENSGT01100000263482.C.c.b.a.b.a.n ##29	ENSGT01100000263482.C.c.b.a.b.a.m ##29	ENSGT01100000263482.D #30	ENSGT00390000007247 #31	ENSGT00940000156438 #32
Steppe mouse	MODERN SPECIES	3305	ENSMSIG00000011045	Chct1 (ENSMSIG00000011050) #11	Usp32 (ENSMSIG00000011103) #12	ENSMSIG00000011217	Car4 (ENSMSIG00000011228) #13	Znhit3 (ENSMSIG00000011245) #14	Myo19 (ENSMSIG00000011255) #15	Pigw (ENSMSIG00000011294)	Ggnbp2 (ENSMSIG00000011309) #16	Dhrs11 (ENSMSIG00000011441) #17	Mrm1 (ENSMSIG00000011460) #18	Lhx1 (ENSMSIG00000011492) #19	Aatf (ENSMSIG00000011523)	Acaca (ENSMSIG00000011559) #21	Gm11437 (ENSMSIG00000011800)	Tada2a (ENSMSIG00000011818) #22	Dusp14 (ENSMSIG00000011867) #23	Synrg (ENSMSIG00000011874) #24	Ddx52 (ENSMSIG00000012043) #25	Hnf1b (ENSMSIG00000012071) #26	Heatr6 (ENSMSIG00000012205) #27	Wfdc21 (ENSMSIG00000012277) #28	Wfdc18 (ENSMSIG00000012297)	Wfdc17 (ENSMSIG00000012316)	ENSMSIG00000012323	ENSMSIG00000012332	ENSMSIG00000012344	Ccl4 (ENSMSIG00000012352) #29	Ccl3 (ENSMSIG00000012367) ##29	Ccl6 (ENSMSIG00000012387) ##29	Ccl9 (ENSMSIG00000012396) ##29
spretus	MODERN SPECIES	2	Ppm1d (MGP_SPRETEiJ_G0017751) #9	MGP_SPRETEiJ_G0017750 #10	Chct1 (MGP_SPRETEiJ_G0017749) #11	Usp32 (MGP_SPRETEiJ_G0017748) #12	Car4 (MGP_SPRETEiJ_G0017747) #13	Znhit3 (MGP_SPRETEiJ_G0017746) #14	Myo19 (MGP_SPRETEiJ_G0017745) #15	Pigw (MGP_SPRETEiJ_G0017744)	Ggnbp2 (MGP_SPRETEiJ_G0017743) #16	Dhrs11 (MGP_SPRETEiJ_G0017742) #17	Mrm1 (MGP_SPRETEiJ_G0017741) #18	Lhx1 (MGP_SPRETEiJ_G0017740) #19	Aatf (MGP_SPRETEiJ_G0017739)	Gm11437 (MGP_SPRETEiJ_G0017738)	Acaca (MGP_SPRETEiJ_G0017737) #21	Tada2a (MGP_SPRETEiJ_G0017736) #22	Dusp14 (MGP_SPRETEiJ_G0017735) #23	Synrg (MGP_SPRETEiJ_G0017734) #24	Ddx52 (MGP_SPRETEiJ_G0017733) #25	Hnf1b (MGP_SPRETEiJ_G0017732) #26	Heatr6 (MGP_SPRETEiJ_G0017731) #27	Wfdc21 (MGP_SPRETEiJ_G0017730) #28	Wfdc18 (MGP_SPRETEiJ_G0017729)	Wfdc17 (MGP_SPRETEiJ_G0017728)	Ccl4 (MGP_SPRETEiJ_G0017727) #29	Ccl3 (MGP_SPRETEiJ_G0017726) ##29	MGP_SPRETEiJ_G0017725	Ccl6 (MGP_SPRETEiJ_G0017724) ##29	Ccl9 (MGP_SPRETEiJ_G0017723) ##29	Ccl5 (MGP_SPRETEiJ_G0017722) #30	Heatr9 (MGP_SPRETEiJ_G0017721) #31
Ryukyu mouse	MODERN SPECIES	2	Ppm1d (MGP_CAROLIEiJ_G0016906) #9	Appbp2 (MGP_CAROLIEiJ_G0016905) #10	Chct1 (MGP_CAROLIEiJ_G0016904) #11	Usp32 (MGP_CAROLIEiJ_G0016903) #12	Car4 (MGP_CAROLIEiJ_G0016902) #13	Znhit3 (MGP_CAROLIEiJ_G0016901) #14	Myo19 (MGP_CAROLIEiJ_G0016900) #15	Pigw (MGP_CAROLIEiJ_G0016899)	Ggnbp2 (MGP_CAROLIEiJ_G0016898) #16	Dhrs11 (MGP_CAROLIEiJ_G0016897) #17	Mrm1 (MGP_CAROLIEiJ_G0016896) #18	Lhx1 (MGP_CAROLIEiJ_G0016895) #19	Aatf (MGP_CAROLIEiJ_G0016894)	Gm11437 (MGP_CAROLIEiJ_G0016893)	Acaca (MGP_CAROLIEiJ_G0016892) #21	Tada2a (MGP_CAROLIEiJ_G0016891) #22	Dusp14 (MGP_CAROLIEiJ_G0016890) #23	Synrg (MGP_CAROLIEiJ_G0016889) #24	Ddx52 (MGP_CAROLIEiJ_G0016888) #25	Hnf1b (MGP_CAROLIEiJ_G0016887) #26	Heatr6 (MGP_CAROLIEiJ_G0016886) #27	Wfdc21 (MGP_CAROLIEiJ_G0016885) #28	Wfdc18 (MGP_CAROLIEiJ_G0016884)	Wfdc17 (MGP_CAROLIEiJ_G0016883)	Ccl4 (MGP_CAROLIEiJ_G0016882) #29	Ccl3 (MGP_CAROLIEiJ_G0016881) ##29	Ccl6 (MGP_CAROLIEiJ_G0016880) ##29	Ccl9 (MGP_CAROLIEiJ_G0016879) ##29	Ccl5 (MGP_CAROLIEiJ_G0016878) #30	Heatr9 (MGP_CAROLIEiJ_G0016877) #31	Taf15 (MGP_CAROLIEiJ_G0016876) #32
Shrew mouse	MODERN SPECIES	5	Ppm1d (MGP_PahariEiJ_G0018036) #9	Appbp2 (MGP_PahariEiJ_G0018035) #10	Chct1 (MGP_PahariEiJ_G0018034) #11	Usp32 (MGP_PahariEiJ_G0018033) #12	Car4 (MGP_PahariEiJ_G0018032) #13	Znhit3 (MGP_PahariEiJ_G0018031) #14	Myo19 (MGP_PahariEiJ_G0018030) #15	Pigw (MGP_PahariEiJ_G0018029)	Ggnbp2 (MGP_PahariEiJ_G0018028) #16	Dhrs11 (MGP_PahariEiJ_G0018027) #17	Mrm1 (MGP_PahariEiJ_G0018026) #18	Lhx1 (MGP_PahariEiJ_G0018025) #19	Aatf (MGP_PahariEiJ_G0018024)	Gm11437 (MGP_PahariEiJ_G0018023)	Acaca (MGP_PahariEiJ_G0018022) #21	Tada2a (MGP_PahariEiJ_G0018021) #22	Dusp14 (MGP_PahariEiJ_G0018020) #23	Synrg (MGP_PahariEiJ_G0018019) #24	Ddx52 (MGP_PahariEiJ_G0018018) #25	Hnf1b (MGP_PahariEiJ_G0018017) #26	Heatr6 (MGP_PahariEiJ_G0018016) #27	Wfdc21 (MGP_PahariEiJ_G0018015) #28	Ccl4 (MGP_PahariEiJ_G0018013) #29	Ccl3 (MGP_PahariEiJ_G0018012) ##29	Ccl6 (MGP_PahariEiJ_G0018011) ##29	Ccl9 (MGP_PahariEiJ_G0018010) ##29	Ccl5 (MGP_PahariEiJ_G0018009) #30	Heatr9 (MGP_PahariEiJ_G0018008) #31	Taf15 (MGP_PahariEiJ_G0018007) #32	Mmp28 (MGP_PahariEiJ_G0018006) #33	1700020L24Rik (MGP_PahariEiJ_G0018005) #34
Rat	MODERN SPECIES	1	ENSRNOG00000069734	Usp32 (ENSRNOG00000027711) #12	ENSRNOG00000067083	Car4 (ENSRNOG00000002916) #13	Znhit3 (ENSRNOG00000063476) #14	Myo19 (ENSRNOG00000002852) #15	Pigw (ENSRNOG00000027857)	Ggnbp2 (ENSRNOG00000027860) #16	Ube2i (ENSRNOG00000017907)	Dhrs11 (ENSRNOG00000027891) #17	Mrm1 (ENSRNOG00000027901) #18	Lhx1 (ENSRNOG00000002812) #19	Aatf (ENSRNOG00000002778)	LOC102552988 (ENSRNOG00000028116)	Acaca (ENSRNOG00000034013) #21	Tada2a (ENSRNOG00000002757) #22	Dusp14 (ENSRNOG00000030091) #23	Ac1576 (ENSRNOG00000058372)	Synrg (ENSRNOG00000053814) #24	Ddx52 (ENSRNOG00000002612) #25	Hnf1b (ENSRNOG00000002598) #26	Heatr6 (ENSRNOG00000002542) #27	Wfdc21 (ENSRNOG00000029668) #28	AABR07030143.1 (ENSRNOG00000057390)	Wfdc18 (ENSRNOG00000037097)	ENSRNOG00000067505	Anos1 (ENSRNOG00000002497)	ENSRNOG00000066744	LOC100909660 (ENSRNOG00000066869)	LOC103695128 (ENSRNOG00000051084)	ENSRNOG00000070672
Upper Galilee mountains blind mole rat	MODERN SPECIES	1422																Tada2a (ENSNGAG00000019511) #22	Dusp14 (ENSNGAG00000000587) #23	Synrg (ENSNGAG00000000321) #24	Ddx52 (ENSNGAG00000020686) #25	Hnf1b (ENSNGAG00000017601) #26	Heatr6 (ENSNGAG00000016534) #27	Wfdc21 (ENSNGAG00000012983) #28	ENSNGAG00000017535	Ccl4 (ENSNGAG00000003228) #29	Ccl3 (ENSNGAG00000003991) ##29	ENSNGAG00000006220	Ccl5 (ENSNGAG00000003622) #30	Heatr9 (ENSNGAG00000011711) #31	Taf15 (ENSNGAG00000017633) #32	ENSNGAG00000015117	Mmp28 (ENSNGAG00000014473) #33
Lesser Egyptian jerboa	MODERN SPECIES	112	Ppm1d (ENSJJAG00000024338) #9	Appbp2 (ENSJJAG00000018940) #10	Chct1 (ENSJJAG00000008525) #11	Usp32 (ENSJJAG00000013153) #12	Car4 (ENSJJAG00000024230) #13	Znhit3 (ENSJJAG00000021789) #14	Myo19 (ENSJJAG00000018388) #15	Ggnbp2 (ENSJJAG00000020699) #16	Dhrs11 (ENSJJAG00000006482) #17	Mrm1 (ENSJJAG00000010068) #18	Lhx1 (ENSJJAG00000024155) #19	Aatf (ENSJJAG00000000330)	Acaca (ENSJJAG00000016405) #21	Gm11437 (ENSJJAG00000004019)	ENSJJAG00000010620	Tada2a (ENSJJAG00000014360) #22	Dusp14 (ENSJJAG00000010198) #23	Synrg (ENSJJAG00000021827) #24	Ddx52 (ENSJJAG00000021877) #25	Hnf1b (ENSJJAG00000011207) #26	Heatr6 (ENSJJAG00000012154) #27	Wfdc21 (ENSJJAG00000014661) #28	ENSJJAG00000023138	Ccl4 (ENSJJAG00000011404) #29	Ccl3 (ENSJJAG00000022032) ##29	Ccl5 (ENSJJAG00000024069) #30	Heatr9 (ENSJJAG00000012557) #31	Taf15 (ENSJJAG00000010606) #32	Mmp28 (ENSJJAG00000009319) #33	1700020L24Rik (ENSJJAG00000011369) #34	ENSJJAG00000020015 #35
Rodentia_A	ANCESTRAL SPECIES	3	ENSGT00940000155672 #9	ENSGT00390000010722 #10	ENSGT00390000003769 #11	ENSGT00940000155797 #12	ENSGT00940000155690 #13	ENSGT00390000010822 #14	ENSGT00940000157382 #15	ENSGT00390000013520	ENSGT00390000009552 #16	ENSGT00840000129887 #17	ENSGT00390000018761 #18	ENSGT00940000160834 #19	ENSGT00390000000288	ENSGT00940000156706 #21	ENSGT00390000008122	ENSGT00940000156751 #22	ENSGT00940000160675 #23	ENSGT00390000010789 #24	ENSGT00550000074863 #25	ENSGT00940000153818.a.b.a.b #26	ENSGT00390000016675 #27	ENSGT00520000060616 #28	ENSGT00960000187851	ENSGT00940000165476	ENSGT01100000263482.D #30	ENSGT00390000007247 #31	ENSGT00940000156438 #32	ENSGT00940000159596 #33	ENSGT00390000007830 #34	ENSGT00940000154849.a #35	ENSGT01060000250264
Sciuridae	ANCESTRAL SPECIES	4	ENSGT00940000155672 #9	ENSGT00390000010722 #10	ENSGT00390000003769 #11	ENSGT00940000155797 #12	ENSGT00940000155690 #13	ENSGT00390000010822 #14	ENSGT00940000157382 #15	ENSGT00390000013520	ENSGT00390000009552 #16	ENSGT00840000129887 #17	ENSGT00390000018761 #18	ENSGT00940000160834 #19	ENSGT00390000000288	ENSGT00940000156706 #21	ENSGT00390000008122	ENSGT00940000156751 #22	ENSGT00940000160675 #23	ENSGT00390000010789 #24	ENSGT00550000074863 #25	ENSGT00940000153818.a.b.a.b #26	ENSGT00390000016675 #27	ENSGT00520000060616 #28	ENSGT00960000187851	ENSGT00940000166945	ENSGT01100000263482.C.c.a #29	ENSGT01100000263482.C.c.b.b.a.b ##29	ENSGT00940000165476	ENSGT01100000263482.C.c.b.a.b.a ##29	ENSGT01100000263482.C.c.b.a.b.b ##29	ENSGT01100000263482.B ##29	ENSGT01100000263482.D #30
Marmotini	ANCESTRAL SPECIES	8	ENSGT00940000153288.a.b.a.a	ENSGT00390000010722 #10	ENSGT00390000003769 #11	ENSGT00940000155797 #12	ENSGT00940000155690 #13	ENSGT00390000010822 #14	ENSGT00940000157382 #15	ENSGT00390000013520	ENSGT00390000009552 #16	ENSGT00840000129887 #17	ENSGT00390000018761 #18	ENSGT00940000160834 #19	ENSGT00390000000288	ENSGT00940000156706 #21	ENSGT00390000008122	ENSGT00940000156751 #22	ENSGT00940000160675 #23	ENSGT00390000010789 #24	ENSGT00550000074863 #25	ENSGT00940000153818.a.b.a.b #26	ENSGT00390000016675 #27	ENSGT00520000060616 #28	ENSGT01100000263482.C.c.a #29	ENSGT01100000263482.C.c.b.b.a.b ##29	ENSGT00390000010003.ab	ENSGT01100000263482.C.c.b.a.b.a ##29	ENSGT01100000263482.C.c.b.a.b.b ##29	ENSGT01100000263482.B ##29	ENSGT01100000263482.D #30	ENSGT00390000007247 #31	ENSGT00940000156438 #32
Marmotini_b	ANCESTRAL SPECIES	5	ENSGT00940000153288.a.b.a.a	ENSGT00390000010722 #10	ENSGT00390000003769 #11	ENSGT00940000155797 #12	ENSGT00940000155690 #13	ENSGT00390000010822 #14	ENSGT00940000157382 #15	ENSGT00390000013520	ENSGT00390000009552 #16	ENSGT00840000129887 #17	ENSGT00390000018761 #18	ENSGT00940000160834 #19	ENSGT00390000000288	ENSGT00940000156706 #21	ENSGT00390000008122	ENSGT00940000156751 #22	ENSGT00940000160675 #23	ENSGT00390000010789 #24	ENSGT00550000074863 #25	ENSGT00940000153818.a.b.a.b #26	ENSGT00390000016675 #27	ENSGT00520000060616 #28	ENSGT01100000263482.C.c.a #29	ENSGT01100000263482.C.c.b.b.a.b ##29	ENSGT00390000010003.ab	ENSGT01100000263482.C.c.b.a.b.a ##29	ENSGT01100000263482.C.c.b.a.b.b ##29	ENSGT01100000263482.B ##29	ENSGT01100000263482.D #30	ENSGT00390000007247 #31	ENSGT00940000156438 #32
Squirrel	MODERN SPECIES	90	PPM1D (ENSSTOG00000021256) #9	APPBP2 (ENSSTOG00000011350) #10	CHCT1 (ENSSTOG00000003182) #11	ENSSTOG00000029070 #12	CA4 (ENSSTOG00000010432) #13	ZNHIT3 (ENSSTOG00000013559) #14	MYO19 (ENSSTOG00000013563) #15	PIGW (ENSSTOG00000034045)	GGNBP2 (ENSSTOG00000002398) #16	DHRS11 (ENSSTOG00000002410) #17	MRM1 (ENSSTOG00000002422) #18	LHX1 (ENSSTOG00000022593) #19	AATF (ENSSTOG00000002458)	C17orf78 (ENSSTOG00000002508)	ACACA (ENSSTOG00000002468) #21	TADA2A (ENSSTOG00000002518) #22	DUSP14 (ENSSTOG00000002528) #23	SYNRG (ENSSTOG00000002530) #24	DDX52 (ENSSTOG00000002550) #25	HNF1B (ENSSTOG00000012440) #26	HEATR6 (ENSSTOG00000026901) #27	ENSSTOG00000032858 #28	ENSSTOG00000013313 #29	ENSSTOG00000027458 ##29	ENSSTOG00000031610	ENSSTOG00000027899 ##29	ENSSTOG00000034887 ##29	CCL14 (ENSSTOG00000033490) ##29	ENSSTOG00000015833 #30	HEATR9 (ENSSTOG00000028751) #31	TAF15 (ENSSTOG00000002081) #32
Arctic ground squirrel	MODERN SPECIES	193	PPM1D (ENSUPAG00010011169) #9	ENSUPAG00010011175	APPBP2 (ENSUPAG00010011180) #10	CHCT1 (ENSUPAG00010011193) #11	ENSUPAG00010011211 #12	CA4 (ENSUPAG00010011234) #13	ENSUPAG00010011238	MYO19 (ENSUPAG00010011260) #15	GGNBP2 (ENSUPAG00010011289) #16	DHRS11 (ENSUPAG00010011375) #17	MRM1 (ENSUPAG00010011380) #18	LHX1 (ENSUPAG00010011394) #19	AATF (ENSUPAG00010011404)	ACACA (ENSUPAG00010011440) #21	C17orf78 (ENSUPAG00010011568)	TADA2A (ENSUPAG00010011582) #22	DUSP14 (ENSUPAG00010011617) #23	SYNRG (ENSUPAG00010011623) #24	DDX52 (ENSUPAG00010012034) #25	HNF1B (ENSUPAG00010012073) #26	HEATR6 (ENSUPAG00010012102) #27	ENSUPAG00010012127 #28
Alpin marmot	MODERN SPECIES	42	ENSMMMG00000019748	APPBP2 (ENSMMMG00000019739) #10	CHCT1 (ENSMMMG00000019735) #11	ENSMMMG00000019716 #12	ENSMMMG00000019712 #13	ZNHIT3 (ENSMMMG00000019709) #14	MYO19 (ENSMMMG00000019686) #15	PIGW (ENSMMMG00000019680)	GGNBP2 (ENSMMMG00000019594) #16	DHRS11 (ENSMMMG00000019586) #17	MRM1 (ENSMMMG00000019574) #18	LHX1 (ENSMMMG00000019565) #19	ENSMMMG00000019558	ACACA (ENSMMMG00000019480) #21	C17orf78 (ENSMMMG00000019471)	TADA2A (ENSMMMG00000019464) #22	DUSP14 (ENSMMMG00000019458) #23	SYNRG (ENSMMMG00000019201) #24	DDX52 (ENSMMMG00000019175) #25	ENSMMMG00000019174	ENSMMMG00000019173	HNF1B (ENSMMMG00000019142) #26	HEATR6 (ENSMMMG00000019131) #27	ENSMMMG00000019129	ENSMMMG00000019125	ENSMMMG00000019119 #29	ENSMMMG00000019116	ENSMMMG00000019105 ##29	ENSMMMG00000019093 ##29	ENSMMMG00000019090 ##29	ENSMMMG00000019088
Eurasian red squirrel	MODERN SPECIES	12	APPBP2 (ENSSVLG00005007432) #10	CHCT1 (ENSSVLG00005007474) #11	ENSSVLG00005007515 #12	CA4 (ENSSVLG00005007650) #13	ZNHIT3 (ENSSVLG00005007716) #14	ENSSVLG00005007764 #15	PIGW (ENSSVLG00005007830)	GGNBP2 (ENSSVLG00005007850) #16	DHRS11 (ENSSVLG00005007894) #17	MRM1 (ENSSVLG00005007932) #18	LHX1 (ENSSVLG00005007965) #19	AATF (ENSSVLG00005008003)	ACACA (ENSSVLG00005008078) #21	ENSSVLG00005008470	ENSSVLG00005008508	TADA2A (ENSSVLG00005008528) #22	ENSSVLG00005008610	SYNRG (ENSSVLG00005008671) #24	DDX52 (ENSSVLG00005008941) #25	HNF1B (ENSSVLG00005008984) #26	HEATR6 (ENSSVLG00005009203) #27	ENSSVLG00005009414 #28	ENSSVLG00005009438	ENSSVLG00005009477 #29	ENSSVLG00005009573 ##29	ENSSVLG00005009611 ##29	ENSSVLG00005009720	ENSSVLG00005009747 ##29	CCL14 (ENSSVLG00005009782) ##29	CCL16 (ENSSVLG00005009830) ##29	ENSSVLG00005009862 #30
Hystricomorpha	ANCESTRAL SPECIES	3	ENSGT00940000155672 #9	ENSGT00390000010722 #10	ENSGT00390000003769 #11	ENSGT00940000155797 #12	ENSGT00940000155690 #13	ENSGT00390000010822 #14	ENSGT00940000157382 #15	ENSGT00390000013520	ENSGT00390000009552 #16	ENSGT00840000129887 #17	ENSGT00390000018761 #18	ENSGT00940000160834 #19	ENSGT00390000000288	ENSGT00940000156706 #21	ENSGT00390000008122	ENSGT00940000156751 #22	ENSGT00940000160675 #23	ENSGT00390000010789 #24	ENSGT00550000074863 #25	ENSGT00940000153818.a.b.a.b #26	ENSGT00390000016675 #27	ENSGT00520000060616 #28	ENSGT00940000166945	ENSGT01100000263482.C.c.a #29	ENSGT01100000263482.C.c.b.b.b ##29	ENSGT01100000263482.C.c.b.b.a.b ##29	ENSGT01100000263482.C.c.b.a.a ##29	ENSGT01100000263482.C.c.b.a.b.a ##29	ENSGT01100000263482.C.c.b.a.b.b ##29	ENSGT01100000263482.B ##29	ENSGT01100000263482.D #30
Naked mole-rat female	MODERN SPECIES	12	ENSHGLG00000008032 #9	ENSHGLG00000045654	ENSHGLG00000050018	ENSHGLG00000009096 #12	ENSHGLG00000010334 #13	ENSHGLG00000034474 #14	ENSHGLG00000011039 #15	PIGW (ENSHGLG00000012822)	GGNBP2 (ENSHGLG00000013148) #16	DHRS11 (ENSHGLG00000035143) #17	MRM1 (ENSHGLG00000008701) #18	LHX1 (ENSHGLG00000042105) #19	AATF (ENSHGLG00000009510)	ENSHGLG00000038049	ACACA (ENSHGLG00000011781) #21	TADA2A (ENSHGLG00000003972) #22	DUSP14 (ENSHGLG00000033195) #23	ENSHGLG00000047903	SYNRG (ENSHGLG00000004431) #24	DDX52 (ENSHGLG00000006235) #25	ENSHGLG00000007638 #26	ENSHGLG00000001663	ENSHGLG00000001698	POLG2 (ENSHGLG00000037428)	DDX5 (ENSHGLG00000001771)	ENSHGLG00000044021	ENSHGLG00000001847	ENSHGLG00000001992	ENSHGLG00000002095	ENSHGLG00000002130	ENSHGLG00000047592
Hystricomorpha_a	ANCESTRAL SPECIES		ENSGT00940000155672 #9	ENSGT00390000010722 #10	ENSGT00390000003769 #11	ENSGT00940000155797 #12	ENSGT00940000155690 #13	ENSGT00390000010822 #14	ENSGT00940000157382 #15	ENSGT00390000013520	ENSGT00390000009552 #16	ENSGT00840000129887 #17	ENSGT00390000018761 #18	ENSGT00940000160834 #19	ENSGT00390000000288	ENSGT00940000156706 #21	ENSGT00390000008122	ENSGT00940000156751 #22	ENSGT00940000160675 #23	ENSGT00390000010789 #24	ENSGT00550000074863 #25	ENSGT00940000153818.a.b.a.b #26	ENSGT00390000016675 #27	ENSGT00520000060616 #28	ENSGT00940000166945	ENSGT01100000263482.C.c.a #29	ENSGT01100000263482.C.c.b.b.b ##29	ENSGT00940000165476	ENSGT01100000263482.D #30	ENSGT00390000007247 #31	ENSGT00940000156438 #32	ENSGT00940000159596 #33	ENSGT00390000007830 #34
Hystricomorpha_b	ANCESTRAL SPECIES		ENSGT00940000155672 #9	ENSGT00390000010722 #10	ENSGT00390000003769 #11	ENSGT00940000155797 #12	ENSGT00940000155690 #13	ENSGT00390000010822 #14	ENSGT00940000157382 #15	ENSGT00390000013520	ENSGT00390000009552 #16	ENSGT00840000129887 #17	ENSGT00390000018761 #18	ENSGT00940000160834 #19	ENSGT00390000000288	ENSGT00940000156706 #21	ENSGT00390000008122	ENSGT00940000156751 #22	ENSGT00940000160675 #23	ENSGT00390000010789 #24	ENSGT00550000074863 #25	ENSGT00940000153818.a.b.a.b #26	ENSGT00390000016675 #27	ENSGT00520000060616 #28	ENSGT00940000166945	ENSGT01100000263482.C.c.a #29	ENSGT01100000263482.C.c.b.b.b ##29	ENSGT01100000263482.C.c.b.a.a ##29	ENSGT01100000263482.C.c.b.a.b.a ##29	ENSGT00940000165476	ENSGT01100000263482.D #30	ENSGT00390000007247 #31	ENSGT00940000156438 #32
Degu	MODERN SPECIES	205	CHCT1 (ENSODEG00000013458) #11	ENSODEG00000012951	ENSODEG00000013719	ENSODEG00000015311 #12	ENSODEG00000012868 #14	MYO19 (ENSODEG00000013791) #15	GGNBP2 (ENSODEG00000012950) #16	ENSODEG00000012529 #17	ENSODEG00000013042 #18	ENSODEG00000012953 #18	ENSODEG00000013680	LHX1 (ENSODEG00000012895) #19	AATF (ENSODEG00000013074)	ENSODEG00000013269	ACACA (ENSODEG00000014030) #21	TADA2A (ENSODEG00000014579) #22	DUSP14 (ENSODEG00000020057) #23	SYNRG (ENSODEG00000013858) #24	ENSODEG00000012814 #25	ENSODEG00000012382	HNF1B (ENSODEG00000012709) #26	HEATR6 (ENSODEG00000013428) #27	ENSODEG00000013109	ENSODEG00000013480 #29	ENSODEG00000013198 ##29	ENSODEG00000013395 #29	ENSODEG00000013298	ENSODEG00000012792 #30	HEATR9 (ENSODEG00000012621) #31	ENSODEG00000012915 #32	MMP28 (ENSODEG00000016303) #33
Long-tailed chinchilla	MODERN SPECIES	158	PPM1D (ENSCLAG00000010623) #9	APPBP2 (ENSCLAG00000014528) #10	CHCT1 (ENSCLAG00000015267) #11	ENSCLAG00000012909 #12	CA4 (ENSCLAG00000014926) #13	ZNHIT3 (ENSCLAG00000013180) #14	MYO19 (ENSCLAG00000011498) #15	PIGW (ENSCLAG00000010868)	GGNBP2 (ENSCLAG00000015068) #16	DHRS11 (ENSCLAG00000012667) #17	MRM1 (ENSCLAG00000010960) #18	LHX1 (ENSCLAG00000014662) #19	AATF (ENSCLAG00000014631)	C17orf78 (ENSCLAG00000013611)	ACACA (ENSCLAG00000015071) #21	TADA2A (ENSCLAG00000016976) #22	DUSP14 (ENSCLAG00000012666) #23	SYNRG (ENSCLAG00000013031) #24	DDX52 (ENSCLAG00000016292) #25	HNF1B (ENSCLAG00000016506) #26	HEATR6 (ENSCLAG00000010390) #27	ENSCLAG00000012435 #28	ENSCLAG00000011924	ENSCLAG00000016754	ENSCLAG00000012634 #29	ENSCLAG00000014501 ##29
Guinea pig	MODERN SPECIES	32	BCAS3 (ENSCPOG00000001933) #8	PPM1D (ENSCPOG00000000343) #9	APPBP2 (ENSCPOG00000033874) #10	CHCT1 (ENSCPOG00000005521) #11	ENSCPOG00000005504 #12	CA4 (ENSCPOG00000026479) #13	ZNHIT3 (ENSCPOG00000031447) #14	MYO19 (ENSCPOG00000004270) #15	PIGW (ENSCPOG00000004275)	GGNBP2 (ENSCPOG00000004278) #16	DHRS11 (ENSCPOG00000036629) #17	MRM1 (ENSCPOG00000004283) #18	LHX1 (ENSCPOG00000027154) #19	AATF (ENSCPOG00000006037)	ACACA (ENSCPOG00000006043) #21	TADA2A (ENSCPOG00000001869) #22	DUSP14 (ENSCPOG00000032995) #23	SYNRG (ENSCPOG00000004643) #24	DDX52 (ENSCPOG00000001232) #25	HNF1B (ENSCPOG00000001234) #26	HEATR6 (ENSCPOG00000015165) #27	ENSCPOG00000036860 #28	ENSCPOG00000035230	ENSCPOG00000032867 #29	ENSCPOG00000033663 ##29	ENSCPOG00000037138 ##29	ENSCPOG00000026400 ##29	ENSCPOG00000039417 ##29	CCL14 (ENSCPOG00000035450) ##29	ENSCPOG00000008852 #30	HEATR9 (ENSCPOG00000010117) #31
Lagomorpha	ANCESTRAL SPECIES		ENSGT00390000006454 #8	ENSGT00940000155672 #9	ENSGT00390000010722 #10	ENSGT00390000003769 #11	ENSGT00940000155797 #12	ENSGT00940000155690 #13	ENSGT00390000010822 #14	ENSGT00940000157382 #15	ENSGT00390000013520	ENSGT00390000009552 #16	ENSGT00840000129887 #17	ENSGT00390000018761 #18	ENSGT00940000160834 #19	ENSGT00390000000288	ENSGT00940000156706 #21	ENSGT00940000156751 #22	ENSGT00940000160675 #23	ENSGT00390000010789 #24	ENSGT00550000074863 #25	ENSGT00940000153818.a.b.a.b #26	ENSGT00390000016675 #27	ENSGT00520000060616 #28	ENSGT00940000165089	ENSGT01100000263482.C.c.b.b.a.b ##29	ENSGT00940000165476.b	ENSGT01100000263482.C.c.b.a.b.b ##29	ENSGT01100000263482.B ##29	ENSGT01100000263482.D #30	ENSGT00390000007247 #31	ENSGT00940000156438 #32	ENSGT00940000159596 #33
Rabbit	MODERN SPECIES	10	BCAS3 (ENSOCUG00000010794) #8	ENSOCUG00000029614 #9	APPBP2 (ENSOCUG00000009419) #10	CHCT1 (ENSOCUG00000009414) #11	ENSOCUG00000009402 #12	ENSOCUG00000009399 #13	ENSOCUG00000000920 #14	MYO19 (ENSOCUG00000000921) #15	PIGW (ENSOCUG00000000924)	GGNBP2 (ENSOCUG00000000925) #16	DHRS11 (ENSOCUG00000021228) #17	MRM1 (ENSOCUG00000012149) #18	LHX1 (ENSOCUG00000024664) #19	AATF (ENSOCUG00000014434)	ACACA (ENSOCUG00000014453) #21	TADA2A (ENSOCUG00000014504) #22	DUSP14 (ENSOCUG00000009880) #23	SYNRG (ENSOCUG00000014519) #24	DDX52 (ENSOCUG00000014532) #25	HNF1B (ENSOCUG00000003682) #26	HEATR6 (ENSOCUG00000003690) #27	ENSOCUG00000036945 #28	ENSOCUG00000026206	ENSOCUG00000000771 ##29	ENSOCUG00000000686	CCL14 (ENSOCUG00000002849) ##29	ENSOCUG00000002848 #30	HEATR9 (ENSOCUG00000002842) #31	TAF15 (ENSOCUG00000002838) #32	MMP28 (ENSOCUG00000004089) #33	C17orf50 (ENSOCUG00000004084) #34
Pika	MODERN SPECIES	121																TADA2A (ENSOPRG00000003802) #22	DUSP14 (ENSOPRG00000003841) #23	SYNRG (ENSOPRG00000003846) #24	DDX52 (ENSOPRG00000003899) #25	HNF1B (ENSOPRG00000003933) #26