Murinae	ANCESTRAL SPECIES	5	ENSGT00730000111293 #8	ENSGT00940000161601 #9	ENSGT00940000156456 #10	ENSGT00940000161266 #11	ENSGT00940000162209 #12	ENSGT00390000012265	ENSGT00940000157208 #13	ENSGT00940000164694 #14	ENSGT00950000183039.B.b.a #15	ENSGT00730000111202 #16	ENSGT00940000155531.b #17	ENSGT00950000183039.B.a #18	ENSGT00940000156335 #19	ENSGT00390000013727.d #20	ENSGT01000000214413.b.a.a #21	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #29	ENSGT00940000154384.h.b.f #30	ENSGT00940000160614 #31	ENSGT00940000156162.C.k #32	ENSGT00940000154552.b #33	ENSGT00940000156941 #34	ENSGT00940000153661.a.a #35	ENSGT00940000157312 #37	ENSGT00950000183169.C
Rat	MODERN SPECIES	11	Samd7 (ENSRNOG00000027995) #7	Lrrc31 (ENSRNOG00000027971) #8	Lrriq4 (ENSRNOG00000009004) #9	Lrrc34 (ENSRNOG00000027935) #10	Mynn (ENSRNOG00000027923) #11	Actrt3 (ENSRNOG00000027908) #12	Mecom (ENSRNOG00000012645) #13	Egfem1 (ENSRNOG00000023908) #14	Kcnmb2 (ENSRNOG00000010094) #15	Zmat3 (ENSRNOG00000063864) #16	Pik3ca (ENSRNOG00000056371) #17	Kcnmb3 (ENSRNOG00000027836) #18	Zfp639 (ENSRNOG00000043053) #19	Mfn1 (ENSRNOG00000011057) #20	Gnb4 (ENSRNOG00000011070) #21	Actl6a (ENSRNOG00000011553) #22	Mrpl47 (ENSRNOG00000011639) #23	Ndufb5 (ENSRNOG00000011949) #24	Usp13 (ENSRNOG00000030639) #25	Pex5l (ENSRNOG00000011211) #26	Ttc14 (ENSRNOG00000011261) #27	Ccdc39 (ENSRNOG00000011440) #28	Fxr1 (ENSRNOG00000051480) #29	Dnajc19 (ENSRNOG00000049819) #30	Sox2 (ENSRNOG00000012199) #31	Atp11b (ENSRNOG00000052116) #32	Dcun1d1 (ENSRNOG00000012734) #33	Mccc1 (ENSRNOG00000013293) #34	Ccdc144b (ENSRNOG00000056177) #35	ENSRNOG00000065565 #36	Acad9 (ENSRNOG00000014178) #37
Mus	ANCESTRAL SPECIES	7	ENSGT00940000160075 #7	ENSGT00390000002757	ENSGT00390000015520	ENSGT00940000154964	ENSGT00940000153497.E	ENSGT00940000158435	ENSGT00890000139496	ENSGT00940000155893.b	ENSGT00950000183039.B.b.a #15	ENSGT00730000111202 #16	ENSGT00940000155531.b #17	ENSGT00950000183039.B.a #18	ENSGT00940000156335 #19	ENSGT00390000013727.d #20	ENSGT01000000214413.b.a.a #21	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #29	ENSGT00940000154384.h.b.f #30	ENSGT00940000160614 #31	ENSGT00940000156162.C.k #32	ENSGT00940000154552.b #33	ENSGT00940000156941 #34	ENSGT00940000153661.a.a #35	ENSGT00940000157312 #37	ENSGT00950000183169.C
Mus_A	ANCESTRAL SPECIES	9	ENSGT00940000160075 #7	ENSGT00390000002757	ENSGT00390000015520	ENSGT00940000154964	ENSGT00940000153497.E	ENSGT00940000158435	ENSGT00890000139496	ENSGT00940000155893.b	ENSGT00950000183039.B.b.a #15	ENSGT00730000111202 #16	ENSGT00940000155531.b #17	ENSGT00950000183039.B.a #18	ENSGT00940000156335 #19	ENSGT00390000013727.d #20	ENSGT01000000214413.b.a.a #21	ENSGT00940000156305 #22	ENSGT00390000002837.y #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #29	ENSGT00940000154384.h.b.f #30	ENSGT00940000160614 #31	ENSGT00940000156162.C.k #32	ENSGT00940000154552.b #33	ENSGT00940000156941 #34	ENSGT00940000153661.b.b ##35	ENSGT00940000153661.a.a #35	ENSGT00940000157312 #37
Mus_B	ANCESTRAL SPECIES	8	ENSGT00940000160075 #7	ENSGT00390000002757	ENSGT00390000015520	ENSGT00940000154964	ENSGT00940000153497.E	ENSGT00940000158435	ENSGT00890000139496	ENSGT00940000155893.b	ENSGT00950000183039.B.b.a #15	ENSGT00730000111202 #16	ENSGT00940000155531.b #17	ENSGT00950000183039.B.a #18	ENSGT00940000156335 #19	ENSGT00390000013727.d #20	ENSGT01000000214413.b.a.a #21	ENSGT00940000156305 #22	ENSGT00390000002837.y #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #29	ENSGT00940000154384.h.b.f #30	ENSGT00940000160614 #31	ENSGT00940000156162.C.k #32	ENSGT00940000154552.b #33	ENSGT00940000156941 #34	ENSGT00940000153661.a.a #35	ENSGT00940000157312 #37	ENSGT00950000183169.C
Mouse	MODERN SPECIES	12	Samd7 (ENSMUSG00000051860) #7	Sec62 (ENSMUSG00000027706)	Gpr160 (ENSMUSG00000037661)	Phc3 (ENSMUSG00000037652)	Prkci (ENSMUSG00000037643)	Skil (ENSMUSG00000027660)	Cldn11 (ENSMUSG00000037625)	Slc7a14 (ENSMUSG00000069072)	Kcnmb2 (ENSMUSG00000037610) #15	Zmat3 (ENSMUSG00000027663) #16	Pik3ca (ENSMUSG00000027665) #17	Kcnmb3 (ENSMUSG00000091091) #18	Zfp639 (ENSMUSG00000027667) #19	Mfn1 (ENSMUSG00000027668) #20	Gnb4 (ENSMUSG00000027669) #21	Actl6a (ENSMUSG00000027671) #22	Mrpl47 (ENSMUSG00000037531) #23	Ndufb5 (ENSMUSG00000027673) #24	Usp13 (ENSMUSG00000056900) #25	Pex5l (ENSMUSG00000027674) #26	Ttc14 (ENSMUSG00000027677) #27	Ccdc39 (ENSMUSG00000027676) #28	Fxr1 (ENSMUSG00000027680) #29	Dnajc19 (ENSMUSG00000027679) #30	Sox2 (ENSMUSG00000074637) #31	Atp11b (ENSMUSG00000037400) #32	Dcun1d1 (ENSMUSG00000027708) #33	Mccc1 (ENSMUSG00000027709) #34	Ccdc144b (ENSMUSG00000047696) ##35	Acad9 (ENSMUSG00000027710) #37	Zfp267 (ENSMUSG00000033883)
Mus_C	ANCESTRAL SPECIES	6	ENSGT00940000160075 #7	ENSGT00390000002757	ENSGT00390000015520	ENSGT00940000154964	ENSGT00940000153497.E	ENSGT00940000158435	ENSGT00890000139496	ENSGT00940000155893.b	ENSGT00950000183039.B.b.a #15	ENSGT00730000111202 #16	ENSGT00940000155531.b #17	ENSGT00950000183039.B.a #18	ENSGT00940000156335 #19	ENSGT00390000013727.d #20	ENSGT01000000214413.b.a.a #21	ENSGT00940000156305 #22	ENSGT00390000002837.y #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #29	ENSGT00940000154384.h.b.f #30	ENSGT00940000160614 #31	ENSGT00940000156162.C.k #32	ENSGT00940000154552.b #33	ENSGT00940000156941 #34	ENSGT00940000153661.a.a #35	ENSGT00940000157312 #37	ENSGT00950000183169.C
spretus	MODERN SPECIES	12	Samd7 (MGP_SPRETEiJ_G0025839) #7	Sec62 (MGP_SPRETEiJ_G0025840)	Gpr160 (MGP_SPRETEiJ_G0025841)	Phc3 (MGP_SPRETEiJ_G0025842)	Prkci (MGP_SPRETEiJ_G0025843)	Skil (MGP_SPRETEiJ_G0025844)	Cldn11 (MGP_SPRETEiJ_G0025845)	Slc7a14 (MGP_SPRETEiJ_G0025846)	Kcnmb2 (MGP_SPRETEiJ_G0025847) #15	Zmat3 (MGP_SPRETEiJ_G0025848) #16	Pik3ca (MGP_SPRETEiJ_G0025849) #17	Kcnmb3 (MGP_SPRETEiJ_G0025850) #18	Zfp639 (MGP_SPRETEiJ_G0025851) #19	Mfn1 (MGP_SPRETEiJ_G0025852) #20	Gnb4 (MGP_SPRETEiJ_G0025853) #21	Actl6a (MGP_SPRETEiJ_G0025854) #22	Mrpl47 (MGP_SPRETEiJ_G0025855) #23	Ndufb5 (MGP_SPRETEiJ_G0025856) #24	Usp13 (MGP_SPRETEiJ_G0025857) #25	Pex5l (MGP_SPRETEiJ_G0025858) #26	Ttc14 (MGP_SPRETEiJ_G0025859) #27	Ccdc39 (MGP_SPRETEiJ_G0025860) #28	Fxr1 (MGP_SPRETEiJ_G0025861) #29	Dnajc19 (MGP_SPRETEiJ_G0025862) #30	Sox2 (MGP_SPRETEiJ_G0025863) #31	Atp11b (MGP_SPRETEiJ_G0025864) #32	MGP_SPRETEiJ_G0025865 #33	Mccc1 (MGP_SPRETEiJ_G0025866) #34	MGP_SPRETEiJ_G0025867 #35	Acad9 (MGP_SPRETEiJ_G0025868) #37	Zfp267 (MGP_SPRETEiJ_G0025869)
Steppe mouse	MODERN SPECIES	2721											ENSMSIG00000031669 #17	Kcnmb3 (ENSMSIG00000031664) #18	Zfp639 (ENSMSIG00000031663) #19	Mfn1 (ENSMSIG00000031656) #20	Gnb4 (ENSMSIG00000031655) #21	Actl6a (ENSMSIG00000031649) #22	ENSMSIG00000031644 #23	ENSMSIG00000031643	Ndufb5 (ENSMSIG00000031641) #24	Usp13 (ENSMSIG00000031514) #25	ENSMSIG00000031504	Pex5l (ENSMSIG00000031307) #26
Ryukyu mouse	MODERN SPECIES	12	MGP_CAROLIEiJ_G0024905 #7	Sec62 (MGP_CAROLIEiJ_G0024906)	Gpr160 (MGP_CAROLIEiJ_G0024907)	Phc3 (MGP_CAROLIEiJ_G0024908)	Prkci (MGP_CAROLIEiJ_G0024909)	Skil (MGP_CAROLIEiJ_G0024910)	Cldn11 (MGP_CAROLIEiJ_G0024911)	Slc7a14 (MGP_CAROLIEiJ_G0024912)	Kcnmb2 (MGP_CAROLIEiJ_G0024913) #15	Zmat3 (MGP_CAROLIEiJ_G0024914) #16	Pik3ca (MGP_CAROLIEiJ_G0024915) #17	Kcnmb3 (MGP_CAROLIEiJ_G0024916) #18	Zfp639 (MGP_CAROLIEiJ_G0024917) #19	MGP_CAROLIEiJ_G0024918 #20	Gnb4 (MGP_CAROLIEiJ_G0024919) #21	Actl6a (MGP_CAROLIEiJ_G0024920) #22	Mrpl47 (MGP_CAROLIEiJ_G0024921) #23	Ndufb5 (MGP_CAROLIEiJ_G0024922) #24	Usp13 (MGP_CAROLIEiJ_G0024923) #25	Pex5l (MGP_CAROLIEiJ_G0024924) #26	Ttc14 (MGP_CAROLIEiJ_G0024925) #27	Ccdc39 (MGP_CAROLIEiJ_G0024926) #28	Fxr1 (MGP_CAROLIEiJ_G0024927) #29	MGP_CAROLIEiJ_G0024928 #30	Sox2 (MGP_CAROLIEiJ_G0024929) #31	Atp11b (MGP_CAROLIEiJ_G0024930) #32	MGP_CAROLIEiJ_G0024931 #33	Mccc1 (MGP_CAROLIEiJ_G0024932) #34	MGP_CAROLIEiJ_G0024933 ##35	MGP_CAROLIEiJ_G0024934 #37	Zfp267 (MGP_CAROLIEiJ_G0024935)
Shrew mouse	MODERN SPECIES	17	Samd7 (MGP_PahariEiJ_G0026350) #7	Sec62 (MGP_PahariEiJ_G0026351)	Gpr160 (MGP_PahariEiJ_G0026352)	Phc3 (MGP_PahariEiJ_G0026353)	Prkci (MGP_PahariEiJ_G0026354)	Skil (MGP_PahariEiJ_G0026355)	Cldn11 (MGP_PahariEiJ_G0026356)	Slc7a14 (MGP_PahariEiJ_G0026357)	Kcnmb2 (MGP_PahariEiJ_G0026358) #15	Zmat3 (MGP_PahariEiJ_G0026359) #16	Pik3ca (MGP_PahariEiJ_G0026360) #17	Kcnmb3 (MGP_PahariEiJ_G0026361) #18	Zfp639 (MGP_PahariEiJ_G0026362) #19	Mfn1 (MGP_PahariEiJ_G0026363) #20	Gnb4 (MGP_PahariEiJ_G0026364) #21	Actl6a (MGP_PahariEiJ_G0026365) #22	Mrpl47 (MGP_PahariEiJ_G0026366) #23	Ndufb5 (MGP_PahariEiJ_G0026367) #24	Usp13 (MGP_PahariEiJ_G0026368) #25	Pex5l (MGP_PahariEiJ_G0026369) #26	MGP_PahariEiJ_G0026370 #27	Fxr1 (MGP_PahariEiJ_G0026371) #29	Dnajc19 (MGP_PahariEiJ_G0026372) #30	Sox2 (MGP_PahariEiJ_G0026373) #31	MGP_PahariEiJ_G0026374 #33	Zfp267 (MGP_PahariEiJ_G0026375)	Qrfpr (MGP_PahariEiJ_G0026376)	Anxa5 (MGP_PahariEiJ_G0026377)	MGP_PahariEiJ_G0026378	Exosc9 (MGP_PahariEiJ_G0026379)	Ccna2 (MGP_PahariEiJ_G0026380)