Sarcopterygii	ANCESTRAL SPECIES	26	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00940000153421.a.b #13	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00950000183039.B.a #17	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384 #31	ENSGT00940000160614 #32	ENSGT00940000156162.C #33	ENSGT00940000154552 #34	ENSGT00940000156941 #35	ENSGT00950000182899.C.a #36	ENSGT00940000159676 #37	ENSGT00940000161734
Tetrapoda	ANCESTRAL SPECIES	12	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00940000153421.a.b #13	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00950000183039.B.a #17	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384 #31	ENSGT00940000160614 #32	ENSGT00940000156162.C #33	ENSGT00940000154552 #34	ENSGT00940000156941 #35	ENSGT00950000182899.C.a #36	ENSGT00940000159676 #37	ENSGT00940000161734
Amniota	ANCESTRAL SPECIES	13	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00940000153421.a.b #13	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00950000183039.B.a #17	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384 #31	ENSGT00940000160614 #32	ENSGT00940000156162.C #33	ENSGT00940000154552 #34	ENSGT00940000156941 #35	ENSGT00950000182899.C.a #36	ENSGT00940000161734	ENSGT00940000159676 #37
Mammalia	ANCESTRAL SPECIES	7	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00940000153421.a.b #13	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00950000183039.B.a #17	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384 #31	ENSGT00940000160614 #32	ENSGT00940000156162.C.k #33	ENSGT00940000154552 #34	ENSGT00940000156941 #35	ENSGT00950000182899.C.a #36	ENSGT00940000161734	ENSGT00940000159676 #37
Theria	ANCESTRAL SPECIES	5	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00940000153421.a.b #13	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00950000183039.B.a #17	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384.h.a ##31	ENSGT00940000160614 #32	ENSGT00940000156162.C.k #33	ENSGT00940000154552 #34	ENSGT00940000156941 #35	ENSGT00950000182899.C.a #36	ENSGT00940000161734	ENSGT00940000159676 #37
Eutheria	ANCESTRAL SPECIES	5	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00940000153421.a.b #13	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00950000183039.B.a #17	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384.h.a ##31	ENSGT00940000160614 #32	ENSGT00940000156162.C.k #33	ENSGT00940000154552 #34	ENSGT00940000156941 #35	ENSGT00950000182899.C.a #36	ENSGT00940000161734	ENSGT00940000159676 #37
Boreoeutheria	ANCESTRAL SPECIES	2	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00860000135711	ENSGT00940000153421.a.b #13	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00950000183039.B.a #17	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00910000147128	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384.h.a ##31	ENSGT00940000160614 #32	ENSGT00940000156162.C.k #33	ENSGT00940000154552 #34	ENSGT00940000156941 #35	ENSGT00950000182899.C.a #36	ENSGT00940000159676 #37
Euarchontoglires	ANCESTRAL SPECIES	2	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00860000135711	ENSGT00940000153421.a.b #13	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00910000147422	ENSGT00950000183039.B.a #17	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00960000190585	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00910000147128	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384.h.a ##31	ENSGT00940000160614 #32	ENSGT00940000156162.C.k #33	ENSGT00940000154552.b #34	ENSGT00940000156941 #35	ENSGT00950000182899.C.a #36
Euarchontoglires_A	ANCESTRAL SPECIES	2	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00860000135711	ENSGT00940000153421.a.b #13	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00910000147422	ENSGT00950000183039.B.a #17	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00960000190585	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00910000147128	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384.h.a ##31	ENSGT00940000154384.h.b.f #31	ENSGT00940000160614 #32	ENSGT00940000156162.C.k #33	ENSGT00940000154552.b #34	ENSGT00940000156941 #35
Glires	ANCESTRAL SPECIES	2	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00860000135711	ENSGT00940000153421.a.b #13	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00910000147422	ENSGT00950000183039.B.a #17	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00960000190585	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00910000147128	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384.h.a ##31	ENSGT00940000154384.h.b.f #31	ENSGT00940000160614 #32	ENSGT00940000156162.C.k #33	ENSGT00940000154552.b #34	ENSGT00940000156941 #35
Rodentia	ANCESTRAL SPECIES	2	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00860000135711	ENSGT00940000153421.a.b #13	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00910000147422	ENSGT00950000183039.B.a #17	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00960000190585	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384.h.a ##31	ENSGT00940000154384.h.b.f #31	ENSGT00940000160614 #32	ENSGT00940000156162.C.k #33	ENSGT00940000154552.b #34	ENSGT00940000156941 #35	ENSGT00950000182899.C.a #36
Rodentia_A	ANCESTRAL SPECIES	5	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00860000135711	ENSGT00940000153421.a.b #13	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00910000147422	ENSGT00950000183039.B.a #17	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00960000190585	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384.h.b.f #31	ENSGT00940000154384.h.a ##31	ENSGT00940000160614 #32	ENSGT00940000156162.C.k #33	ENSGT00940000154552.b #34	ENSGT00940000156941 #35	ENSGT00950000182899.C.a #36
Sciuridae	ANCESTRAL SPECIES	12	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00860000135711	ENSGT00940000153421.a.b #13	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00910000147422	ENSGT00950000183039.B.a #17	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00960000190585	ENSGT00390000009980.k #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384.g ##31	ENSGT00940000154384.h.b.f #31	ENSGT00940000160614 #32	ENSGT00940000156162.C.k #33	ENSGT00940000154552.b #34	ENSGT00940000156941 #35	ENSGT00950000182899.C.a #36
Marmotini	ANCESTRAL SPECIES	59	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00860000135711	ENSGT00940000153421.a.b #13	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00910000147422	ENSGT00950000183039.B.a #17	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00960000190585	ENSGT00390000009980.k #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384.g ##31	ENSGT00940000154384.h.b.f #31	ENSGT00940000160614 #32	ENSGT00940000156162.C.k #33	ENSGT00940000154552.b #34	ENSGT00940000156941 #35	ENSGT00950000182899.C.a #36
Marmotini_b	ANCESTRAL SPECIES	149	ENSGT00940000156299.t	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00860000135711	ENSGT00940000153421.a.b #13	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00910000147422	ENSGT00950000183039.B.a #17	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00390000015224.c.b.b.a.a #21	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980.k #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384.g ##31	ENSGT00940000154384.h.b.f #31	ENSGT00940000160614 #32	ENSGT00940000156162.C.k #33	ENSGT00940000154552.b #34	ENSGT00940000156941 #35	ENSGT00950000182899.C.a #36	ENSGT00940000159676 #37
Squirrel	MODERN SPECIES	166							TBL1XR1 (ENSSTOG00000014252) #13	KCNMB2 (ENSSTOG00000002726) #14	ZMAT3 (ENSSTOG00000028436) #15	PIK3CA (ENSSTOG00000012906) #16	KCNMB3 (ENSSTOG00000013715) #17	ZNF639 (ENSSTOG00000001442) #18	MFN1 (ENSSTOG00000005167) #19	GNB4 (ENSSTOG00000005210) #20	ENSSTOG00000033903 #21	ACTL6A (ENSSTOG00000010540) #22	MRPL47 (ENSSTOG00000032487) #23	NDUFB5 (ENSSTOG00000010557) #24	USP13 (ENSSTOG00000002367) #25	PEX5L (ENSSTOG00000002383) #26	TTC14 (ENSSTOG00000003827) #27	ENSSTOG00000003847 #28	ENSSTOG00000011392 #29	FXR1 (ENSSTOG00000010612) #30	ENSSTOG00000011508 #31	SOX2 (ENSSTOG00000011011) #32	ATP11B (ENSSTOG00000016462) #33	DCUN1D1 (ENSSTOG00000016465) #34	MCCC1 (ENSSTOG00000010361) #35	ENSSTOG00000010372 #36	B3GNT5 (ENSSTOG00000010399) #37
Arctic ground squirrel	MODERN SPECIES	22	SPATA16 (ENSUPAG00010022746)	NLGN1 (ENSUPAG00010022744)	NAALADL2 (ENSUPAG00010022740)	ENSUPAG00010022737	TBL1XR1 (ENSUPAG00010022733) #13	KCNMB2 (ENSUPAG00010022732) #14	ZMAT3 (ENSUPAG00010022730) #15	PIK3CA (ENSUPAG00010022723) #16	ENSUPAG00010022722	KCNMB3 (ENSUPAG00010022719) #17	ENSUPAG00010022718	ZNF639 (ENSUPAG00010022715) #18	MFN1 (ENSUPAG00010022711) #19	GNB4 (ENSUPAG00010022702) #20	ENSUPAG00010022699 #21	ACTL6A (ENSUPAG00010022696) #22	MRPL47 (ENSUPAG00010022693) #23	NDUFB5 (ENSUPAG00010022690) #24	USP13 (ENSUPAG00010022684) #25	PEX5L (ENSUPAG00010022611) #26	TTC14 (ENSUPAG00010022594) #27	CCDC39 (ENSUPAG00010022590) #28	ENSUPAG00010022589	FXR1 (ENSUPAG00010022534) #30	ENSUPAG00010022530 ##31	ATP11B (ENSUPAG00010022507) #33	DCUN1D1 (ENSUPAG00010022504) #34	MCCC1 (ENSUPAG00010022499) #35	ENSUPAG00010022496 #36	ENSUPAG00010022491	ENSUPAG00010022487
Alpin marmot	MODERN SPECIES	37	SPATA16 (ENSMMMG00000004708)	NLGN1 (ENSMMMG00000004664)	ENSMMMG00000004633	ENSMMMG00000004628	NAALADL2 (ENSMMMG00000004611)	ENSMMMG00000004587	ENSMMMG00000004514 #13	KCNMB2 (ENSMMMG00000004486) #14	ZMAT3 (ENSMMMG00000004454) #15	PIK3CA (ENSMMMG00000004387) #16	ENSMMMG00000004373	KCNMB3 (ENSMMMG00000004362) #17	ENSMMMG00000004333 #18	MFN1 (ENSMMMG00000004267) #19	GNB4 (ENSMMMG00000004203) #20	ACTL6A (ENSMMMG00000004175) #22	MRPL47 (ENSMMMG00000004133) #23	ENSMMMG00000004120	NDUFB5 (ENSMMMG00000004098) #24	USP13 (ENSMMMG00000004025) #25	PEX5L (ENSMMMG00000003637) #26	ENSMMMG00000003599	ENSMMMG00000003524 #27	ENSMMMG00000003512 #27	CCDC39 (ENSMMMG00000003487) #28	ENSMMMG00000003471	FXR1 (ENSMMMG00000003158) #30	ENSMMMG00000003137 ##31	ENSMMMG00000003124	SOX2 (ENSMMMG00000003111) #32	ENSMMMG00000003075 ##29
Eurasian red squirrel	DUPLICATION
Eurasian red squirrel	MODERN SPECIES	1	SPATA16 (ENSSVLG00005008419)	NLGN1 (ENSSVLG00005008366)	ENSSVLG00005008340	NAALADL2 (ENSSVLG00005008257)	TBL1XR1 (ENSSVLG00005008184) #13	ENSSVLG00005008160	KCNMB2 (ENSSVLG00005008096) #14	ENSSVLG00005008059	ZMAT3 (ENSSVLG00005008037) #15	PIK3CA (ENSSVLG00005007992) #16	KCNMB3 (ENSSVLG00005007870) #17	ENSSVLG00005007822	ENSSVLG00005007788 #18	MFN1 (ENSSVLG00005007726) #19	GNB4 (ENSSVLG00005007689) #20	ENSSVLG00005007595 #22	MRPL47 (ENSSVLG00005007505) #23	ENSSVLG00005007458 #24	USP13 (ENSSVLG00005007303) #25	ENSSVLG00005007236	PEX5L (ENSSVLG00005006552) #26	ENSSVLG00005006293	TTC14 (ENSSVLG00005006262) #27	CCDC39 (ENSSVLG00005006018) #28	ENSSVLG00005005952	FXR1 (ENSSVLG00005005627) #30	ENSSVLG00005005504 ##31	SOX2 (ENSSVLG00005005486) #32	ENSSVLG00005005467	ATP11B (ENSSVLG00005005419) #33	DCUN1D1 (ENSSVLG00005005371) #34
Eurasian red squirrel	MODERN SPECIES	2	ENSSVLG00005014167	ENSSVLG00005014346	ENSSVLG00005014416	ENSSVLG00005014453	ENSSVLG00005014497	ENSSVLG00005014517	ENSSVLG00005014539	ENSSVLG00005014578	ENSSVLG00005014632	ENSSVLG00005014679	ENSSVLG00005014732	ENSSVLG00005014776	ENSSVLG00005014856	OR8B8 (ENSSVLG00005014922)	ENSSVLG00005014945	ENSSVLG00005014960 #22	OR8B12 (ENSSVLG00005015073)	OR8A1 (ENSSVLG00005015091)	PANX3 (ENSSVLG00005015110)	TBRG1 (ENSSVLG00005015166)	SIAE (ENSSVLG00005015262)	SPA17 (ENSSVLG00005015480)	NRGN (ENSSVLG00005015507)	VSIG2 (ENSSVLG00005015545)	ESAM (ENSSVLG00005015674)	MSANTD2 (ENSSVLG00005015771)	ENSSVLG00005015859	ENSSVLG00005015882	ENSSVLG00005015942	ROBO4 (ENSSVLG00005016212)	HEPACAM (ENSSVLG00005016550)
Hystricomorpha	ANCESTRAL SPECIES	6	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00940000153421.a.b #13	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00950000183039.B.a #17	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384.h.a ##31	ENSGT00940000160614 #32	ENSGT00940000156162.C.k #33	ENSGT00940000154552.a.a.a ##34	ENSGT00940000156941 #35	ENSGT00390000008796	ENSGT00390000016972.b.j.a.a	ENSGT00730000111263
Naked mole-rat female	MODERN SPECIES	27	ENSHGLG00000033259	TBL1XR1 (ENSHGLG00000044077) #13	ENSHGLG00000050422	ENSHGLG00000019115	ENSHGLG00000038549	ENSHGLG00000016930	KCNMB2 (ENSHGLG00000041894) #14	ENSHGLG00000011277	ZMAT3 (ENSHGLG00000011523) #15	ENSHGLG00000011894 #16	KCNMB3 (ENSHGLG00000012132) #17	ZNF639 (ENSHGLG00000050776) #18	MFN1 (ENSHGLG00000012515) #19	ENSHGLG00000044219	GNB4 (ENSHGLG00000012880) #20	ACTL6A (ENSHGLG00000013350) #22	MRPL47 (ENSHGLG00000033799) #23	NDUFB5 (ENSHGLG00000014377) #24	USP13 (ENSHGLG00000014472) #25	PEX5L (ENSHGLG00000016946) #26	ENSHGLG00000016952	TTC14 (ENSHGLG00000016959) #27	CCDC39 (ENSHGLG00000016969) #28	ENSHGLG00000039606	FXR1 (ENSHGLG00000018814) #30	ENSHGLG00000014387 ##31	ENSHGLG00000050891	ENSHGLG00000032116	SOX2 (ENSHGLG00000046210) #32	ATP11B (ENSHGLG00000014553) #33	ENSHGLG00000014589 ##34
Hystricomorpha_a	ANCESTRAL SPECIES	4	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00940000153421.a.b #13	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00950000183039.B.a #17	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384.h.b.f #31	ENSGT00940000154384.h.a ##31	ENSGT00940000160614 #32	ENSGT00940000156162.C.k #33	ENSGT00940000154552.a.a.a ##34	ENSGT00940000156941 #35	ENSGT00390000008796	ENSGT00390000016972.b.j.a.a
Hystricomorpha_b	ANCESTRAL SPECIES	9	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00940000153421.a.b #13	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00950000183039.B.a #17	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384.h.a ##31	ENSGT00940000160614 #32	ENSGT00940000156162.C.k #33	ENSGT00940000170892	ENSGT00940000156941 #35	ENSGT00390000008796	ENSGT00390000016972.b.j.a.a	ENSGT00730000111263
Degu	DUPLICATION
Degu	MODERN SPECIES	339														MFN1 (ENSODEG00000002887) #19	GNB4 (ENSODEG00000002845) #20	ENSODEG00000002804 #22	ENSODEG00000002762 #23	NDUFB5 (ENSODEG00000002740) #24	ENSODEG00000002050	ENSODEG00000018753	USP13 (ENSODEG00000001943) #25	PEX5L (ENSODEG00000001608) #26	ENSODEG00000001450 #27	CCDC39 (ENSODEG00000001427) #28	ENSODEG00000001368	ENSODEG00000001069 #30	ENSODEG00000000914 #31
Degu	MODERN SPECIES	71	ENSODEG00000005791	ENSODEG00000005325	KBTBD8 (ENSODEG00000005749)	ENSODEG00000005664	LRIG1 (ENSODEG00000005673)	SLC25A26 (ENSODEG00000006331)	SLC41A3 (ENSODEG00000006800)	ENSODEG00000006480	ENSODEG00000005644	KLF15 (ENSODEG00000005067)	CFAP100 (ENSODEG00000006308)	ZXDC (ENSODEG00000006787)	ENSODEG00000019268	UROC1 (ENSODEG00000006472)	CHST13 (ENSODEG00000006099)	ENSODEG00000005156 #22	ENSODEG00000007573	KCNJ3 (ENSODEG00000005298)	GALNT13 (ENSODEG00000004968)	RPRM (ENSODEG00000019321)
Long-tailed chinchilla	MODERN SPECIES	127	NCEH1 (ENSCLAG00000011865)	ENSCLAG00000013454	ECT2 (ENSCLAG00000015030)	SPATA16 (ENSCLAG00000016484)	NLGN1 (ENSCLAG00000010604)	NAALADL2 (ENSCLAG00000012428)	ENSCLAG00000018045	TBL1XR1 (ENSCLAG00000013893) #13	KCNMB2 (ENSCLAG00000014319) #14	ZMAT3 (ENSCLAG00000013464) #15	PIK3CA (ENSCLAG00000015135) #16	KCNMB3 (ENSCLAG00000014741) #17	ZNF639 (ENSCLAG00000011168) #18	MFN1 (ENSCLAG00000015912) #19	GNB4 (ENSCLAG00000015522) #20	ACTL6A (ENSCLAG00000012251) #22	ENSCLAG00000015039 #23	ENSCLAG00000014903 #24	USP13 (ENSCLAG00000015308) #25	PEX5L (ENSCLAG00000014042) #26	TTC14 (ENSCLAG00000013302) #27	CCDC39 (ENSCLAG00000012683) #28	FXR1 (ENSCLAG00000014182) #30	DNAJC19 (ENSCLAG00000011246) ##31	SOX2 (ENSCLAG00000017978) #32	ATP11B (ENSCLAG00000012551) #33	ENSCLAG00000014207	MCCC1 (ENSCLAG00000014174) #35	LMLN (ENSCLAG00000011520)	ENSCLAG00000012348	IQCG (ENSCLAG00000013851)
Guinea pig	MODERN SPECIES	47	ENSCPOG00000024974	ENSCPOG00000024155	NCEH1 (ENSCPOG00000033460)	ECT2 (ENSCPOG00000004744)	SPATA16 (ENSCPOG00000006395)	NLGN1 (ENSCPOG00000005752)	NAALADL2 (ENSCPOG00000013413)	TBL1XR1 (ENSCPOG00000005472) #13	KCNMB2 (ENSCPOG00000013955) #14	ZMAT3 (ENSCPOG00000003865) #15	PIK3CA (ENSCPOG00000006574) #16	KCNMB3 (ENSCPOG00000025991) #17	ZNF639 (ENSCPOG00000039664) #18	MFN1 (ENSCPOG00000033188) #19	GNB4 (ENSCPOG00000034790) #20	ACTL6A (ENSCPOG00000025370) #22	ENSCPOG00000002312 #23	NDUFB5 (ENSCPOG00000036110) #24	USP13 (ENSCPOG00000002315) #25	PEX5L (ENSCPOG00000002319) #26	TTC14 (ENSCPOG00000015311) #27	CCDC39 (ENSCPOG00000015314) #28	FXR1 (ENSCPOG00000010418) #30	ENSCPOG00000021198 #31	SPTLC1 (ENSCPOG00000015106)	ROR2 (ENSCPOG00000021707)	AUH (ENSCPOG00000001066)	SYK (ENSCPOG00000010410)
Rodentia_B	ANCESTRAL SPECIES	2	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00940000153421.a.b #13	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00950000183039.B.a #17	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384.h.a ##31	ENSGT00940000154384.h.b.f #31	ENSGT00940000160614 #32	ENSGT00940000156162.C.k #33	ENSGT00940000154552.b #34	ENSGT00940000156941 #35	ENSGT00940000164015	ENSGT00950000182899.C.a #36
Kangaroo rat	MODERN SPECIES	493													Zfp639 (ENSDORG00000004733) #18	Mfn1 (ENSDORG00000016388) #19	Gnb4 (ENSDORG00000015363) #20	Actl6a (ENSDORG00000007648) #22	Mrpl47 (ENSDORG00000007650) #23	Ndufb5 (ENSDORG00000007651) #24	ENSDORG00000001060	Usp13 (ENSDORG00000013004) #25	Pex5l (ENSDORG00000013007) #26	Ttc14 (ENSDORG00000002727) #27	Ccdc39 (ENSDORG00000002728) #28	Fxr1 (ENSDORG00000005853) #30	ENSDORG00000005862 ##31
Myomorpha	ANCESTRAL SPECIES	38	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00940000153421.a.b #13	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00950000183039.B.a #17	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384.h.a ##31	ENSGT00940000154384.h.b.f #31	ENSGT00940000160614 #32	ENSGT00940000156162.C.k #33	ENSGT00940000154552.b #34	ENSGT00940000156941 #35	ENSGT00940000153661.b.b
Muroidea	ANCESTRAL SPECIES	83									ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00950000183039.B.a #17	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384.h.b.f #31	ENSGT00940000160614 #32	ENSGT00940000156162.C.k #33	ENSGT00940000154552.b #34	ENSGT00940000156941 #35	ENSGT00940000153661.b.b
Muroidea_A	ANCESTRAL SPECIES	5	ENSGT00730000111293	ENSGT00940000161601	ENSGT00940000156456	ENSGT00940000161266	ENSGT00940000162209	ENSGT00390000012265	ENSGT00940000157208	ENSGT00940000164694	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00950000183039.B.a #17	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384.h.b.f #31	ENSGT00940000160614 #32	ENSGT00940000156162.C.k #33	ENSGT00940000154552.b #34	ENSGT00940000156941 #35	ENSGT00940000153661.b.b	ENSGT00940000153661.a.a	ENSGT00940000157312
Cricetidae	ANCESTRAL SPECIES	6	ENSGT00940000160075	ENSGT00940000161601	ENSGT00940000156456	ENSGT00940000161266	ENSGT00940000162209	ENSGT00390000012265	ENSGT00940000157208	ENSGT00940000164694	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00950000183039.B.a #17	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701.g.a #27	ENSGT00390000013701.g.b #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384.h.a ##31	ENSGT00940000160614 #32	ENSGT00940000156162.C.k #33	ENSGT00940000154552.b #34	ENSGT00940000156941 #35	ENSGT00940000153661.b.b	ENSGT00940000153661.a.a
Cricetinae	ANCESTRAL SPECIES	13	ENSGT00940000160075	ENSGT00940000161601	ENSGT00940000156456	ENSGT00940000161266	ENSGT00940000162209	ENSGT00390000012265	ENSGT00940000157208	ENSGT00940000164694	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00950000183039.B.a #17	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701.g.a #27	ENSGT00390000013701.g.b #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384.h.a ##31	ENSGT00940000160614 #32	ENSGT00940000156162.C.k #33	ENSGT00940000154552.b #34	ENSGT00940000156941 #35	ENSGT00940000153661.a.a	ENSGT00940000157312
Chinese hamster chok1gshd	MODERN SPECIES	352	Samd7 (ENSCGRG00001019079)	Lrriq4 (ENSCGRG00001016290)	Lrrc34 (ENSCGRG00001011347)	Mynn (ENSCGRG00001011074)	Actrt3 (ENSCGRG00001000653)	ENSCGRG00001010291	Mecom (ENSCGRG00001011582)	Egfem1 (ENSCGRG00001021334)	Kcnmb2 (ENSCGRG00001009106) #14	Zmat3 (ENSCGRG00001012339) #15	Pik3ca (ENSCGRG00001019897) #16	Kcnmb3 (ENSCGRG00001008742) #17	ENSCGRG00001021748 #18	ENSCGRG00001022585 #19	Gnb4 (ENSCGRG00001021439) #20	Actl6a (ENSCGRG00001013395) #22	Mrpl47 (ENSCGRG00001015111) #23	Ndufb5 (ENSCGRG00001005505) #24	Usp13 (ENSCGRG00001017123) #25	Pex5l (ENSCGRG00001018482) #26	Ttc14 (ENSCGRG00001021605) #27	Ccdc39 (ENSCGRG00001018347) #28	Fxr1 (ENSCGRG00001024795) #30	ENSCGRG00001000090 ##31	Sox2 (ENSCGRG00001008732) #32	Atp11b (ENSCGRG00001021308) #33	ENSCGRG00001013592	ENSCGRG00001019778 #34	Mccc1 (ENSCGRG00001012469) #35	ENSCGRG00001017668	Acad9 (ENSCGRG00001017444)
Golden Hamster	MODERN SPECIES	636	Gpr160 (ENSMAUG00000009648)	Sec62 (ENSMAUG00000011713)	Lrriq4 (ENSMAUG00000017468)	Lrrc34 (ENSMAUG00000011698)	Mynn (ENSMAUG00000018740)	Actrt3 (ENSMAUG00000014894)	ENSMAUG00000017495	Mecom (ENSMAUG00000017146)	Egfem1 (ENSMAUG00000012184)	Kcnmb2 (ENSMAUG00000006173) #14	Zmat3 (ENSMAUG00000001986) #15	Pik3ca (ENSMAUG00000019874) #16	Kcnmb3 (ENSMAUG00000005213) #17	Mfn1 (ENSMAUG00000010778) #19	Gnb4 (ENSMAUG00000011589) #20	ENSMAUG00000018855 #22	Mrpl47 (ENSMAUG00000010772) #23	Ndufb5 (ENSMAUG00000017888) #24	Usp13 (ENSMAUG00000008996) #25	Pex5l (ENSMAUG00000011108) #26	ENSMAUG00000009258 #27	ENSMAUG00000000140 #27	Ccdc39 (ENSMAUG00000009369) #28	Fxr1 (ENSMAUG00000001188) #30	ENSMAUG00000011285 ##31	Sox2 (ENSMAUG00000017052) #32	Atp11b (ENSMAUG00000000325) #33	ENSMAUG00000018021 #34	ENSMAUG00000019275	Mccc1 (ENSMAUG00000018926) #35	ENSMAUG00000000987
Cricetidae_B	ANCESTRAL SPECIES	55	ENSGT00940000160075	ENSGT00940000161601	ENSGT00940000156456	ENSGT00940000161266	ENSGT00940000162209	ENSGT00390000012265	ENSGT00940000157208	ENSGT00940000164694	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00950000183039.B.a #17	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701.g.a #27	ENSGT00390000013701.g.b #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384.h.a ##31	ENSGT00940000154384.g ##31	ENSGT00940000160614 #32	ENSGT00940000156162.C.k #33	ENSGT00940000154552.b #34	ENSGT00940000156941 #35	ENSGT00940000153661.b.b
Prairie vole	MODERN SPECIES		Lrriq4 (ENSMOCG00000004550)	ENSMOCG00000005957	Lrrc34 (ENSMOCG00000016121)	Mynn (ENSMOCG00000015696)	Actrt3 (ENSMOCG00000015666)	ENSMOCG00000020206	Mecom (ENSMOCG00000021596)	Egfem1 (ENSMOCG00000018732)	Kcnmb2 (ENSMOCG00000017078) #14	Zmat3 (ENSMOCG00000018844) #15	Pik3ca (ENSMOCG00000013980) #16	Kcnmb3 (ENSMOCG00000016804) #17	Zfp639 (ENSMOCG00000020301) #18	Mfn1 (ENSMOCG00000019248) #19	Gnb4 (ENSMOCG00000015281) #20	Actl6a (ENSMOCG00000014148) #22	ENSMOCG00000007933 #23	ENSMOCG00000019293 #24	Usp13 (ENSMOCG00000015377) #25	Pex5l (ENSMOCG00000014372) #26	ENSMOCG00000020574 #27	ENSMOCG00000012924 #27	Ccdc39 (ENSMOCG00000018440) #28	Fxr1 (ENSMOCG00000017707) #30	Dnajc19 (ENSMOCG00000004841) ##31	Sox2 (ENSMOCG00000008169) #32	ENSMOCG00000011558	Atp11b (ENSMOCG00000013153) #33	ENSMOCG00000005771 #34	Mccc1 (ENSMOCG00000003671) #35	ENSMOCG00000009970
Northern American deer mouse	MODERN SPECIES	19	Lrrc34 (ENSPEMG00000002888)	Mynn (ENSPEMG00000000610)	Actrt3 (ENSPEMG00000018524)	ENSPEMG00000013723	Mecom (ENSPEMG00000013270)	ENSPEMG00000029688	Egfem1 (ENSPEMG00000008460)	Kcnmb2 (ENSPEMG00000000476) #14	ENSPEMG00000026565	Zmat3 (ENSPEMG00000019154) #15	Pik3ca (ENSPEMG00000018399) #16	Kcnmb3 (ENSPEMG00000015081) #17	Zfp639 (ENSPEMG00000011611) #18	Mfn1 (ENSPEMG00000010348) #19	Gnb4 (ENSPEMG00000028778) #20	Actl6a (ENSPEMG00000015742) #22	Mrpl47 (ENSPEMG00000026294) #23	Ndufb5 (ENSPEMG00000018635) #24	Usp13 (ENSPEMG00000001021) #25	Pex5l (ENSPEMG00000006300) #26	Ttc14 (ENSPEMG00000013671) #27	Ccdc39 (ENSPEMG00000017829) #28	Fxr1 (ENSPEMG00000012962) #30	ENSPEMG00000006887 ##31	ENSPEMG00000026113	Sox2 (ENSPEMG00000013974) #32	ENSPEMG00000024881	Atp11b (ENSPEMG00000001656) #33	ENSPEMG00000018868 #34	Mccc1 (ENSPEMG00000014164) #35	ENSPEMG00000011597
Murinae	ANCESTRAL SPECIES	5	ENSGT00730000111293	ENSGT00940000161601	ENSGT00940000156456	ENSGT00940000161266	ENSGT00940000162209	ENSGT00390000012265	ENSGT00940000157208	ENSGT00940000164694	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00950000183039.B.a #17	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384.h.b.f #31	ENSGT00940000160614 #32	ENSGT00940000156162.C.k #33	ENSGT00940000154552.b #34	ENSGT00940000156941 #35	ENSGT00940000153661.a.a	ENSGT00940000157312	ENSGT00950000183169.C
Mus	ANCESTRAL SPECIES	7	ENSGT00940000160075	ENSGT00390000002757	ENSGT00390000015520	ENSGT00940000154964	ENSGT00940000153497.E	ENSGT00940000158435	ENSGT00890000139496	ENSGT00940000155893.b	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00950000183039.B.a #17	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384.h.b.f #31	ENSGT00940000160614 #32	ENSGT00940000156162.C.k #33	ENSGT00940000154552.b #34	ENSGT00940000156941 #35	ENSGT00940000153661.a.a	ENSGT00940000157312	ENSGT00950000183169.C
Mus_A	ANCESTRAL SPECIES	9	ENSGT00940000160075	ENSGT00390000002757	ENSGT00390000015520	ENSGT00940000154964	ENSGT00940000153497.E	ENSGT00940000158435	ENSGT00890000139496	ENSGT00940000155893.b	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00950000183039.B.a #17	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837.y #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384.h.b.f #31	ENSGT00940000160614 #32	ENSGT00940000156162.C.k #33	ENSGT00940000154552.b #34	ENSGT00940000156941 #35	ENSGT00940000153661.b.b	ENSGT00940000153661.a.a	ENSGT00940000157312
Mus_B	ANCESTRAL SPECIES	8	ENSGT00940000160075	ENSGT00390000002757	ENSGT00390000015520	ENSGT00940000154964	ENSGT00940000153497.E	ENSGT00940000158435	ENSGT00890000139496	ENSGT00940000155893.b	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00950000183039.B.a #17	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837.y #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384.h.b.f #31	ENSGT00940000160614 #32	ENSGT00940000156162.C.k #33	ENSGT00940000154552.b #34	ENSGT00940000156941 #35	ENSGT00940000153661.a.a	ENSGT00940000157312	ENSGT00950000183169.C
Mouse	MODERN SPECIES	12	Samd7 (ENSMUSG00000051860)	Sec62 (ENSMUSG00000027706)	Gpr160 (ENSMUSG00000037661)	Phc3 (ENSMUSG00000037652)	Prkci (ENSMUSG00000037643)	Skil (ENSMUSG00000027660)	Cldn11 (ENSMUSG00000037625)	Slc7a14 (ENSMUSG00000069072)	Kcnmb2 (ENSMUSG00000037610) #14	Zmat3 (ENSMUSG00000027663) #15	Pik3ca (ENSMUSG00000027665) #16	Kcnmb3 (ENSMUSG00000091091) #17	Zfp639 (ENSMUSG00000027667) #18	Mfn1 (ENSMUSG00000027668) #19	Gnb4 (ENSMUSG00000027669) #20	Actl6a (ENSMUSG00000027671) #22	Mrpl47 (ENSMUSG00000037531) #23	Ndufb5 (ENSMUSG00000027673) #24	Usp13 (ENSMUSG00000056900) #25	Pex5l (ENSMUSG00000027674) #26	Ttc14 (ENSMUSG00000027677) #27	Ccdc39 (ENSMUSG00000027676) #28	Fxr1 (ENSMUSG00000027680) #30	Dnajc19 (ENSMUSG00000027679) #31	Sox2 (ENSMUSG00000074637) #32	Atp11b (ENSMUSG00000037400) #33	Dcun1d1 (ENSMUSG00000027708) #34	Mccc1 (ENSMUSG00000027709) #35	Ccdc144b (ENSMUSG00000047696)	Acad9 (ENSMUSG00000027710)	Zfp267 (ENSMUSG00000033883)
Mus_C	ANCESTRAL SPECIES	6	ENSGT00940000160075	ENSGT00390000002757	ENSGT00390000015520	ENSGT00940000154964	ENSGT00940000153497.E	ENSGT00940000158435	ENSGT00890000139496	ENSGT00940000155893.b	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00950000183039.B.a #17	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837.y #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384.h.b.f #31	ENSGT00940000160614 #32	ENSGT00940000156162.C.k #33	ENSGT00940000154552.b #34	ENSGT00940000156941 #35	ENSGT00940000153661.a.a	ENSGT00940000157312	ENSGT00950000183169.C
spretus	MODERN SPECIES	12	Samd7 (MGP_SPRETEiJ_G0025839)	Sec62 (MGP_SPRETEiJ_G0025840)	Gpr160 (MGP_SPRETEiJ_G0025841)	Phc3 (MGP_SPRETEiJ_G0025842)	Prkci (MGP_SPRETEiJ_G0025843)	Skil (MGP_SPRETEiJ_G0025844)	Cldn11 (MGP_SPRETEiJ_G0025845)	Slc7a14 (MGP_SPRETEiJ_G0025846)	Kcnmb2 (MGP_SPRETEiJ_G0025847) #14	Zmat3 (MGP_SPRETEiJ_G0025848) #15	Pik3ca (MGP_SPRETEiJ_G0025849) #16	Kcnmb3 (MGP_SPRETEiJ_G0025850) #17	Zfp639 (MGP_SPRETEiJ_G0025851) #18	Mfn1 (MGP_SPRETEiJ_G0025852) #19	Gnb4 (MGP_SPRETEiJ_G0025853) #20	Actl6a (MGP_SPRETEiJ_G0025854) #22	Mrpl47 (MGP_SPRETEiJ_G0025855) #23	Ndufb5 (MGP_SPRETEiJ_G0025856) #24	Usp13 (MGP_SPRETEiJ_G0025857) #25	Pex5l (MGP_SPRETEiJ_G0025858) #26	Ttc14 (MGP_SPRETEiJ_G0025859) #27	Ccdc39 (MGP_SPRETEiJ_G0025860) #28	Fxr1 (MGP_SPRETEiJ_G0025861) #30	Dnajc19 (MGP_SPRETEiJ_G0025862) #31	Sox2 (MGP_SPRETEiJ_G0025863) #32	Atp11b (MGP_SPRETEiJ_G0025864) #33	MGP_SPRETEiJ_G0025865 #34	Mccc1 (MGP_SPRETEiJ_G0025866) #35	MGP_SPRETEiJ_G0025867	Acad9 (MGP_SPRETEiJ_G0025868)	Zfp267 (MGP_SPRETEiJ_G0025869)
Steppe mouse	MODERN SPECIES	2721											ENSMSIG00000031669 #16	Kcnmb3 (ENSMSIG00000031664) #17	Zfp639 (ENSMSIG00000031663) #18	Mfn1 (ENSMSIG00000031656) #19	Gnb4 (ENSMSIG00000031655) #20	Actl6a (ENSMSIG00000031649) #22	ENSMSIG00000031644 #23	ENSMSIG00000031643	Ndufb5 (ENSMSIG00000031641) #24	Usp13 (ENSMSIG00000031514) #25	ENSMSIG00000031504	Pex5l (ENSMSIG00000031307) #26
Ryukyu mouse	MODERN SPECIES	12	MGP_CAROLIEiJ_G0024905	Sec62 (MGP_CAROLIEiJ_G0024906)	Gpr160 (MGP_CAROLIEiJ_G0024907)	Phc3 (MGP_CAROLIEiJ_G0024908)	Prkci (MGP_CAROLIEiJ_G0024909)	Skil (MGP_CAROLIEiJ_G0024910)	Cldn11 (MGP_CAROLIEiJ_G0024911)	Slc7a14 (MGP_CAROLIEiJ_G0024912)	Kcnmb2 (MGP_CAROLIEiJ_G0024913) #14	Zmat3 (MGP_CAROLIEiJ_G0024914) #15	Pik3ca (MGP_CAROLIEiJ_G0024915) #16	Kcnmb3 (MGP_CAROLIEiJ_G0024916) #17	Zfp639 (MGP_CAROLIEiJ_G0024917) #18	MGP_CAROLIEiJ_G0024918 #19	Gnb4 (MGP_CAROLIEiJ_G0024919) #20	Actl6a (MGP_CAROLIEiJ_G0024920) #22	Mrpl47 (MGP_CAROLIEiJ_G0024921) #23	Ndufb5 (MGP_CAROLIEiJ_G0024922) #24	Usp13 (MGP_CAROLIEiJ_G0024923) #25	Pex5l (MGP_CAROLIEiJ_G0024924) #26	Ttc14 (MGP_CAROLIEiJ_G0024925) #27	Ccdc39 (MGP_CAROLIEiJ_G0024926) #28	Fxr1 (MGP_CAROLIEiJ_G0024927) #30	MGP_CAROLIEiJ_G0024928 #31	Sox2 (MGP_CAROLIEiJ_G0024929) #32	Atp11b (MGP_CAROLIEiJ_G0024930) #33	MGP_CAROLIEiJ_G0024931 #34	Mccc1 (MGP_CAROLIEiJ_G0024932) #35	MGP_CAROLIEiJ_G0024933	MGP_CAROLIEiJ_G0024934	Zfp267 (MGP_CAROLIEiJ_G0024935)
Shrew mouse	MODERN SPECIES	17	Samd7 (MGP_PahariEiJ_G0026350)	Sec62 (MGP_PahariEiJ_G0026351)	Gpr160 (MGP_PahariEiJ_G0026352)	Phc3 (MGP_PahariEiJ_G0026353)	Prkci (MGP_PahariEiJ_G0026354)	Skil (MGP_PahariEiJ_G0026355)	Cldn11 (MGP_PahariEiJ_G0026356)	Slc7a14 (MGP_PahariEiJ_G0026357)	Kcnmb2 (MGP_PahariEiJ_G0026358) #14	Zmat3 (MGP_PahariEiJ_G0026359) #15	Pik3ca (MGP_PahariEiJ_G0026360) #16	Kcnmb3 (MGP_PahariEiJ_G0026361) #17	Zfp639 (MGP_PahariEiJ_G0026362) #18	Mfn1 (MGP_PahariEiJ_G0026363) #19	Gnb4 (MGP_PahariEiJ_G0026364) #20	Actl6a (MGP_PahariEiJ_G0026365) #22	Mrpl47 (MGP_PahariEiJ_G0026366) #23	Ndufb5 (MGP_PahariEiJ_G0026367) #24	Usp13 (MGP_PahariEiJ_G0026368) #25	Pex5l (MGP_PahariEiJ_G0026369) #26	MGP_PahariEiJ_G0026370 #27	Fxr1 (MGP_PahariEiJ_G0026371) #30	Dnajc19 (MGP_PahariEiJ_G0026372) #31	Sox2 (MGP_PahariEiJ_G0026373) #32	MGP_PahariEiJ_G0026374 #34	Zfp267 (MGP_PahariEiJ_G0026375)	Qrfpr (MGP_PahariEiJ_G0026376)	Anxa5 (MGP_PahariEiJ_G0026377)	MGP_PahariEiJ_G0026378	Exosc9 (MGP_PahariEiJ_G0026379)	Ccna2 (MGP_PahariEiJ_G0026380)
Rat	MODERN SPECIES	11	Samd7 (ENSRNOG00000027995)	Lrrc31 (ENSRNOG00000027971)	Lrriq4 (ENSRNOG00000009004)	Lrrc34 (ENSRNOG00000027935)	Mynn (ENSRNOG00000027923)	Actrt3 (ENSRNOG00000027908)	Mecom (ENSRNOG00000012645)	Egfem1 (ENSRNOG00000023908)	Kcnmb2 (ENSRNOG00000010094) #14	Zmat3 (ENSRNOG00000063864) #15	Pik3ca (ENSRNOG00000056371) #16	Kcnmb3 (ENSRNOG00000027836) #17	Zfp639 (ENSRNOG00000043053) #18	Mfn1 (ENSRNOG00000011057) #19	Gnb4 (ENSRNOG00000011070) #20	Actl6a (ENSRNOG00000011553) #22	Mrpl47 (ENSRNOG00000011639) #23	Ndufb5 (ENSRNOG00000011949) #24	Usp13 (ENSRNOG00000030639) #25	Pex5l (ENSRNOG00000011211) #26	Ttc14 (ENSRNOG00000011261) #27	Ccdc39 (ENSRNOG00000011440) #28	Fxr1 (ENSRNOG00000051480) #30	Dnajc19 (ENSRNOG00000049819) #31	Sox2 (ENSRNOG00000012199) #32	Atp11b (ENSRNOG00000052116) #33	Dcun1d1 (ENSRNOG00000012734) #34	Mccc1 (ENSRNOG00000013293) #35	Ccdc144b (ENSRNOG00000056177)	ENSRNOG00000065565	Acad9 (ENSRNOG00000014178)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1036									Kcnmb2 (ENSNGAG00000023449) #14	Zmat3 (ENSNGAG00000023602) #15	Pik3ca (ENSNGAG00000011770) #16	Kcnmb3 (ENSNGAG00000023104) #17	Zfp639 (ENSNGAG00000017433) #18	Mfn1 (ENSNGAG00000022452) #19	Gnb4 (ENSNGAG00000023855) #20	Actl6a (ENSNGAG00000023000) #22	Mrpl47 (ENSNGAG00000022354) #23	Ndufb5 (ENSNGAG00000019121) #24	Usp13 (ENSNGAG00000008457) #25	Pex5l (ENSNGAG00000021052) #26	Ttc14 (ENSNGAG00000019537) #27	Ccdc39 (ENSNGAG00000023870) #28	Fxr1 (ENSNGAG00000021726) #30	ENSNGAG00000012574 ##31
Lesser Egyptian jerboa	MODERN SPECIES	47	ENSJJAG00000023375	Ghsr (ENSJJAG00000022390)	Nceh1 (ENSJJAG00000023562)	Ect2 (ENSJJAG00000001186)	Spata16 (ENSJJAG00000021398)	Nlgn1 (ENSJJAG00000018596)	Naaladl2 (ENSJJAG00000001804)	ENSJJAG00000012112 #13	Kcnmb2 (ENSJJAG00000021914) #14	Zmat3 (ENSJJAG00000004288) #15	Pik3ca (ENSJJAG00000021453) #16	Kcnmb3 (ENSJJAG00000023050) #17	ENSJJAG00000024013 #18	Mfn1 (ENSJJAG00000019731) #19	ENSJJAG00000023681 #20	Actl6a (ENSJJAG00000017810) #22	Mrpl47 (ENSJJAG00000020002) #23	Ndufb5 (ENSJJAG00000012502) #24	Usp13 (ENSJJAG00000018696) #25	Pex5l (ENSJJAG00000000620) #26	ENSJJAG00000023040 #27	Ccdc39 (ENSJJAG00000016989) #28	Fxr1 (ENSJJAG00000019175) #30	ENSJJAG00000015744 ##31	Sox2 (ENSJJAG00000002483) #32	Atp11b (ENSJJAG00000018460) #33	ENSJJAG00000019826 #34	Mccc1 (ENSJJAG00000003543) #35	ENSJJAG00000016856	Ptpdc1 (ENSJJAG00000015386)	Barx1 (ENSJJAG00000012954)
Lagomorpha	ANCESTRAL SPECIES	6	ENSGT00950000183196.B	ENSGT00940000155015	ENSGT00390000016029	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00940000153421.a.b #13	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00950000183039.B.a #17	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00910000147128	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384.h.a ##31	ENSGT00940000156162.C.k #33	ENSGT00940000154552.b #34	ENSGT00940000156941 #35	ENSGT00950000182899.C.a #36	ENSGT00550000074917	ENSGT00940000153783.b.b.c.a.b
Rabbit	MODERN SPECIES	5	NLGN1 (ENSOCUG00000009269)	ENSOCUG00000032927	NAALADL2 (ENSOCUG00000002042)	ENSOCUG00000006064	ENSOCUG00000020904	ENSOCUG00000031291	ENSOCUG00000031152	ENSOCUG00000039529	TBL1XR1 (ENSOCUG00000017078) #13	KCNMB2 (ENSOCUG00000005494) #14	ZMAT3 (ENSOCUG00000004658) #15	PIK3CA (ENSOCUG00000010631) #16	KCNMB3 (ENSOCUG00000010643) #17	MFN1 (ENSOCUG00000000928) #19	GNB4 (ENSOCUG00000000931) #20	ACTL6A (ENSOCUG00000017883) #22	MRPL47 (ENSOCUG00000017886) #23	NDUFB5 (ENSOCUG00000017887) #24	USP13 (ENSOCUG00000006043) #25	ENSOCUG00000039309	PEX5L (ENSOCUG00000006053) #26	TTC14 (ENSOCUG00000000806) #27	CCDC39 (ENSOCUG00000000812) #28	FXR1 (ENSOCUG00000023518) #30	DNAJC19 (ENSOCUG00000014043) ##31	ENSOCUG00000035765	ENSOCUG00000031658	ENSOCUG00000028029	ATP11B (ENSOCUG00000012358) #33	DCUN1D1 (ENSOCUG00000012386) #34	MCCC1 (ENSOCUG00000012393) #35
Pika	MODERN SPECIES	1416																ACTL6A (ENSOPRG00000007803) #22	MRPL47 (ENSOPRG00000007831) #23	NDUFB5 (ENSOPRG00000007854) #24
Tree shrew	MODERN SPECIES	1702																ACTL6A (ENSTBEG00000006118) #22	ENSTBEG00000006657 #23
Primates	ANCESTRAL SPECIES	1	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00860000135711	ENSGT00940000153421.a.b #13	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00910000147422	ENSGT00950000183039.B.a #17	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00960000190585	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00910000147128	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384.h.a ##31	ENSGT00940000160614 #32	ENSGT00910000146924	ENSGT00940000156162.C.k #33	ENSGT00940000154552.b #34	ENSGT00940000156941 #35
Haplorrhini	ANCESTRAL SPECIES	5	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00860000135711	ENSGT00940000153421.a.b #13	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00910000147422	ENSGT00950000183039.B.a #17	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00910000147128	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384.h.a ##31	ENSGT00940000160614 #32	ENSGT00910000146924	ENSGT00940000156162.C.k #33	ENSGT00940000154552.b #34	ENSGT00940000156941 #35	ENSGT00950000182899.C.a #36
Simiiformes	ANCESTRAL SPECIES	1	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00860000135711	ENSGT00940000153421.a.b #13	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00910000147422	ENSGT00950000183039.B.a #17	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00910000147128	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384.h.a ##31	ENSGT00940000160614 #32	ENSGT00910000146924	ENSGT00940000156162.C.k #33	ENSGT00940000154552.b #34	ENSGT00940000156941 #35	ENSGT00950000182899.C.a #36
Catarrhini	ANCESTRAL SPECIES	2	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00860000135711	ENSGT00940000153421.a.b #13	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00910000147422	ENSGT00950000183039.B.a #17	ENSGT00530000063564.b.e.b	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000154863.db.d	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00910000147128	ENSGT00940000155931 #26	ENSGT00940000154639.n.a	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00940000154942.h.q.b	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384.h.a ##31	ENSGT00940000160614 #32	ENSGT00910000146924	ENSGT00940000156162.C.k #33	ENSGT00940000154552.b.g.a #34
Hominoidea	ANCESTRAL SPECIES	2	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00860000135711	ENSGT00940000153421.a.b #13	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00910000147422	ENSGT00950000183039.B.a #17	ENSGT00530000063564.b.e.b	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000154863.db.d	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00940000154639.n.a	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00940000154942.h.q.b	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384.h.a ##31	ENSGT00940000160614 #32	ENSGT00910000146924	ENSGT00940000156162.C.k #33	ENSGT00940000154552.b.g.a #34	ENSGT00940000156941 #35
Gibbon	MODERN SPECIES	1	ECT2 (ENSNLEG00000005565)	SPATA16 (ENSNLEG00000005617)	NLGN1 (ENSNLEG00000005618)	NAALADL2 (ENSNLEG00000005623)	TBL1XR1 (ENSNLEG00000005631) #13	ENSNLEG00000029452	KCNMB2 (ENSNLEG00000005652) #14	ZMAT3 (ENSNLEG00000005658) #15	PIK3CA (ENSNLEG00000005661) #16	ENSNLEG00000005735 #17	ENSNLEG00000031548	ZNF639 (ENSNLEG00000005744) #18	MFN1 (ENSNLEG00000005745) #19	GNB4 (ENSNLEG00000005751) #20	ENSNLEG00000035220	ACTL6A (ENSNLEG00000035913) #22	MRPL47 (ENSNLEG00000005831) #23	NDUFB5 (ENSNLEG00000034646) #24	USP13 (ENSNLEG00000005851) #25	PEX5L (ENSNLEG00000005874) #26	ENSNLEG00000030368	TTC14 (ENSNLEG00000005900) #27	CCDC39 (ENSNLEG00000005916) #28	ENSNLEG00000033880	FXR1 (ENSNLEG00000005928) #30	DNAJC19 (ENSNLEG00000033702) ##31	SOX2 (ENSNLEG00000018940) #32	ENSNLEG00000032218	ENSNLEG00000030225	ENSNLEG00000032897	ATP11B (ENSNLEG00000005959) #33
Hominidae	ANCESTRAL SPECIES	2	ENSGT00940000155789	ENSGT00940000153244.B.ec.b	ENSGT01030000234598.a.b	ENSGT00860000135711	ENSGT00940000153421.a.b #13	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00910000147422	ENSGT00950000183039.B.a #17	ENSGT00530000063564.b.e.b	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000154863.db.d	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00940000154639.n.a	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384.h.a ##31	ENSGT00940000160614 #32	ENSGT00910000146924	ENSGT00940000156162.C.k #33	ENSGT00940000154552.b.g.a #34	ENSGT00940000156941 #35	ENSGT00940000164015
Orangutan	MODERN SPECIES	16	SPATA16 (ENSPPYG00000014306)	NLGN1 (ENSPPYG00000014309)	ENSPPYG00000030345	NAALADL2 (ENSPPYG00000014311)	ENSPPYG00000014312	TBL1XR1 (ENSPPYG00000033167) #13	KCNMB2 (ENSPPYG00000014313) #14	ENSPPYG00000014315 #15	PIK3CA (ENSPPYG00000025901) #16	ENSPPYG00000034294	KCNMB3 (ENSPPYG00000014316) #17	ZNF639 (ENSPPYG00000031916) #18	MFN1 (ENSPPYG00000014318) #19	GNB4 (ENSPPYG00000040073) #20	ENSPPYG00000040586	ACTL6A (ENSPPYG00000014320) #22	MRPL47 (ENSPPYG00000014321) #23	NDUFB5 (ENSPPYG00000037815) #24	USP13 (ENSPPYG00000014322) #25	PEX5L (ENSPPYG00000014323) #26	ENSPPYG00000014324 #27	CCDC39 (ENSPPYG00000014325) #28	FXR1 (ENSPPYG00000014327) #30	DNAJC19 (ENSPPYG00000014328) ##31	SOX2 (ENSPPYG00000014330) #32	ENSPPYG00000031318	ATP11B (ENSPPYG00000029655) #33	ENSPPYG00000029837 #34	MCCC1 (ENSPPYG00000014331) #35	LAMP3 (ENSPPYG00000014332)	MCF2L2 (ENSPPYG00000014333)
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	2	ENSGT00940000155789	ENSGT00940000153244.B.ec.b	ENSGT01030000234598.a.b	ENSGT00940000153421.a.b #13	ENSGT00860000135711	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00910000147422	ENSGT00950000183039.B.a #17	ENSGT00530000063564.b.e.b	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000154863.db.d	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00940000154639.n.a	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00940000154942.h.q.b	ENSGT00940000158890.q	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384.h.a ##31	ENSGT00940000160614 #32	ENSGT00940000156162.C.k #33	ENSGT00940000154552.b.g.a #34	ENSGT00940000156941 #35
Gorilla	MODERN SPECIES	16	ECT2 (ENSGGOG00000008685)	SPATA16 (ENSGGOG00000002411)	NLGN1 (ENSGGOG00000004187)	NAALADL2 (ENSGGOG00000043435)	TBL1XR1 (ENSGGOG00000009532) #13	ENSGGOG00000041945	KCNMB2 (ENSGGOG00000015779) #14	ZMAT3 (ENSGGOG00000009975) #15	PIK3CA (ENSGGOG00000009365) #16	KCNMB3 (ENSGGOG00000003933) #17	ENSGGOG00000041059	ZNF639 (ENSGGOG00000025664) #18	MFN1 (ENSGGOG00000009357) #19	GNB4 (ENSGGOG00000026248) #20	ENSGGOG00000002247	ACTL6A (ENSGGOG00000015710) #22	MRPL47 (ENSGGOG00000027171) #23	NDUFB5 (ENSGGOG00000005222) #24	USP13 (ENSGGOG00000034809) #25	PEX5L (ENSGGOG00000003000) #26	ENSGGOG00000043452	TTC14 (ENSGGOG00000003335) #27	CCDC39 (ENSGGOG00000034953) #28	ENSGGOG00000041279	ENSGGOG00000025632	ENSGGOG00000009957 #30	DNAJC19 (ENSGGOG00000009120) ##31	ENSGGOG00000040038	ENSGGOG00000013813	ENSGGOG00000037039	ENSGGOG00000022832
Homo/Pan group	ANCESTRAL SPECIES	3	ENSGT00390000015332	ENSGT00940000155789	ENSGT00940000153244.B.ec.b	ENSGT01030000234598.a.b	ENSGT00940000153421.a.b #13	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00910000147422	ENSGT00950000183039.B.a #17	ENSGT00530000063564.b.e.b	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000154863.db.d	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00940000154639.n.a	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00940000154942.h.q.b	ENSGT00940000158890.q	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384.h.a ##31	ENSGT00940000160614 #32	ENSGT00940000156162.C.k #33	ENSGT00940000154552.b.g.a #34	ENSGT00940000156941 #35
Human	MODERN SPECIES	15	TNFSF10 (ENSG00000121858)	NCEH1 (ENSG00000144959)	ECT2 (ENSG00000114346)	SPATA16 (ENSG00000144962)	NLGN1 (ENSG00000169760)	NAALADL2 (ENSG00000177694)	TBL1XR1 (ENSG00000177565) #13	KCNMB2 (ENSG00000197584) #14	ENSG00000275163	ZMAT3 (ENSG00000172667) #15	PIK3CA (ENSG00000121879) #16	KCNMB3 (ENSG00000171121) #17	ZNF639 (ENSG00000121864) #18	MFN1 (ENSG00000171109) #19	GNB4 (ENSG00000114450) #20	ACTL6A (ENSG00000136518) #22	MRPL47 (ENSG00000136522) #23	NDUFB5 (ENSG00000136521) #24	USP13 (ENSG00000058056) #25	PEX5L (ENSG00000114757) #26	TTC14 (ENSG00000163728) #27	CCDC39 (ENSG00000284862) #28	FXR1 (ENSG00000114416) #30	DNAJC19 (ENSG00000205981) ##31	SOX2 (ENSG00000181449) #32	ATP11B (ENSG00000058063) #33	DCUN1D1 (ENSG00000043093) #34	MCCC1 (ENSG00000078070) #35	LAMP3 (ENSG00000078081)	MCF2L2 (ENSG00000053524)	B3GNT5 (ENSG00000176597) #37
Pan	ANCESTRAL SPECIES	2	ENSGT00940000155789	ENSGT00940000153244.B.ec.b	ENSGT01030000234598.a.b	ENSGT00940000158854	ENSGT00940000153421.a.b #13	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00910000147422	ENSGT00950000183039.B.a #17	ENSGT00530000063564.b.e.b	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000154863.db.d	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00940000154639.n.a	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00940000154942.h.q.b	ENSGT00940000158890.q	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384.h.a ##31	ENSGT00910000147572	ENSGT00940000160614 #32	ENSGT00910000146924	ENSGT00940000156162.C.k #33
Bonobo	MODERN SPECIES	16	NLGN1 (ENSPPAG00000030168)	ENSPPAG00000042448	NAALADL2 (ENSPPAG00000032916)	ENSPPAG00000024602	TBL1XR1 (ENSPPAG00000042757) #13	ENSPPAG00000028436	KCNMB2 (ENSPPAG00000035742) #14	ZMAT3 (ENSPPAG00000035483) #15	PIK3CA (ENSPPAG00000028292) #16	KCNMB3 (ENSPPAG00000012788) #17	ENSPPAG00000040290	ZNF639 (ENSPPAG00000031214) #18	MFN1 (ENSPPAG00000043805) #19	GNB4 (ENSPPAG00000043825) #20	ENSPPAG00000031844	ACTL6A (ENSPPAG00000031814) #22	MRPL47 (ENSPPAG00000028033) #23	NDUFB5 (ENSPPAG00000032519) #24	USP13 (ENSPPAG00000001256) #25	PEX5L (ENSPPAG00000036179) #26	ENSPPAG00000001167	TTC14 (ENSPPAG00000040361) #27	CCDC39 (ENSPPAG00000027438) #28	ENSPPAG00000015512	ENSPPAG00000043783	ENSPPAG00000037630 #30	DNAJC19 (ENSPPAG00000019978) ##31	ENSPPAG00000027884	SOX2 (ENSPPAG00000041083) #32	ENSPPAG00000036037	ENSPPAG00000039113
Chimpanzee	MODERN SPECIES	16	NLGN1 (ENSPTRG00000024345)	ENSPTRG00000045205	NAALADL2 (ENSPTRG00000015638)	ENSPTRG00000034248	TBL1XR1 (ENSPTRG00000015639) #13	KCNMB2 (ENSPTRG00000041297) #14	ZMAT3 (ENSPTRG00000015641) #15	PIK3CA (ENSPTRG00000015642) #16	ENSPTRG00000047696	KCNMB3 (ENSPTRG00000015643) #17	ENSPTRG00000051036	ZNF639 (ENSPTRG00000015644) #18	MFN1 (ENSPTRG00000015645) #19	GNB4 (ENSPTRG00000015646) #20	ENSPTRG00000050962	ACTL6A (ENSPTRG00000023973) #22	MRPL47 (ENSPTRG00000015648) #23	NDUFB5 (ENSPTRG00000015649) #24	USP13 (ENSPTRG00000015650) #25	PEX5L (ENSPTRG00000015651) #26	ENSPTRG00000049028	TTC14 (ENSPTRG00000015652) #27	CCDC39 (ENSPTRG00000015653) #28	ENSPTRG00000052129	ENSPTRG00000045151	ENSPTRG00000015656 #30	DNAJC19 (ENSPTRG00000030046) ##31	ENSPTRG00000047311	SOX2 (ENSPTRG00000030045) #32	ENSPTRG00000050568	ENSPTRG00000047631
Cercopithecidae	ANCESTRAL SPECIES	1	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00860000135711	ENSGT00940000153421.a.b #13	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00910000147422	ENSGT00950000183039.B.a #17	ENSGT00530000063564.b.e.b	ENSGT00940000156335.o #18	ENSGT00390000013727.d #19	ENSGT00910000147799	ENSGT01000000214413.b.a.a #20	ENSGT00940000154863.db.d	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00910000147128	ENSGT00940000155931 #26	ENSGT00940000154639.n.a	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00940000154942.h.q.b	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384.h.a ##31	ENSGT00940000160614 #32	ENSGT00910000146924	ENSGT00940000156162.C.k #33	ENSGT00940000154552.b.g.a #34
Rhinopithecus	ANCESTRAL SPECIES	202							ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00950000183039.B.a #17	ENSGT00940000156335.o #18	ENSGT00390000013727.d #19	ENSGT00910000147799	ENSGT01000000214413.b.a.a #20	ENSGT00940000154863.db.d	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980.s #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00940000154639.n.a	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384.h.a ##31	ENSGT00940000160614 #32	ENSGT00910000146924	ENSGT00940000154194	ENSGT00940000158205	ENSGT00940000155196.q.a	ENSGT00940000162645
Black snub-nosed monkey	MODERN SPECIES	74							KCNMB2 (ENSRBIG00000040395) #14	ZMAT3 (ENSRBIG00000029622) #15	PIK3CA (ENSRBIG00000032867) #16	KCNMB3 (ENSRBIG00000028540) #17	ENSRBIG00000041214 #18	MFN1 (ENSRBIG00000035520) #19	ENSRBIG00000029392	GNB4 (ENSRBIG00000026920) #20	ENSRBIG00000032218	ACTL6A (ENSRBIG00000036584) #22	MRPL47 (ENSRBIG00000030725) #23	ENSRBIG00000005151 #24	USP13 (ENSRBIG00000035081) #25	PEX5L (ENSRBIG00000020184) #26	ENSRBIG00000033160	TTC14 (ENSRBIG00000039635) #27	CCDC39 (ENSRBIG00000038461) #28	FXR1 (ENSRBIG00000036968) #30	DNAJC19 (ENSRBIG00000041203) ##31	ENSRBIG00000031071	ENSRBIG00000029493
Golden snub-nosed monkey	MODERN SPECIES	678							KCNMB2 (ENSRROG00000032152) #14	ZMAT3 (ENSRROG00000038345) #15	PIK3CA (ENSRROG00000030283) #16	KCNMB3 (ENSRROG00000043983) #17	ENSRROG00000029735 #18	ENSRROG00000023608	MFN1 (ENSRROG00000015013) #19	GNB4 (ENSRROG00000041513) #20	ENSRROG00000019531	ACTL6A (ENSRROG00000035215) #22	MRPL47 (ENSRROG00000034003) #23	ENSRROG00000042687 #24
Cercopithecinae	ANCESTRAL SPECIES	5	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00860000135711	ENSGT00940000153421.a.b #13	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00910000147422	ENSGT00950000183039.B.a #17	ENSGT00530000063564.b.e.b	ENSGT00940000156335.o #18	ENSGT00390000013727.d #19	ENSGT00910000147799	ENSGT01000000214413.b.a.a #20	ENSGT00940000154863.db.d	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00910000147128	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00940000154942.h.q.b	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384.h.a ##31	ENSGT00940000160614 #32	ENSGT00910000146924	ENSGT00940000156162.C.k #33	ENSGT00940000154552.b.g.a #34	ENSGT00940000156941 #35
Vervet Monkey	MODERN SPECIES	6	ENSCSAG00000018886	ECT2 (ENSCSAG00000012841)	SPATA16 (ENSCSAG00000012878)	NLGN1 (ENSCSAG00000012894)	ENSCSAG00000018885	NAALADL2 (ENSCSAG00000012912)	TBL1XR1 (ENSCSAG00000012927) #13	ENSCSAG00000018884	KCNMB2 (ENSCSAG00000012931) #14	ZMAT3 (ENSCSAG00000012935) #15	PIK3CA (ENSCSAG00000012948) #16	KCNMB3 (ENSCSAG00000012962) #17	ZNF639 (ENSCSAG00000012977) #18	MFN1 (ENSCSAG00000012988) #19	GNB4 (ENSCSAG00000012993) #20	ACTL6A (ENSCSAG00000013017) #22	ENSCSAG00000013046 #23	NDUFB5 (ENSCSAG00000013080) #24	USP13 (ENSCSAG00000013094) #25	PEX5L (ENSCSAG00000013101) #26	TTC14 (ENSCSAG00000013105) #27	CCDC39 (ENSCSAG00000013137) #28	ENSCSAG00000013166	FXR1 (ENSCSAG00000013179) #30	DNAJC19 (ENSCSAG00000013183) ##31	SOX2 (ENSCSAG00000018883) #32	ATP11B (ENSCSAG00000013201) #33	DCUN1D1 (ENSCSAG00000013212) #34	MCCC1 (ENSCSAG00000013226) #35	ENSCSAG00000013232 #36	B3GNT5 (ENSCSAG00000018882) #37
Cercopithecinae_a	ANCESTRAL SPECIES	5	ENSGT00940000154259.l.c.a.a.b	ENSGT01030000234598.a.b	ENSGT00860000135711.a	ENSGT00940000153421.a.b #13	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00910000147422	ENSGT00950000183039.B.a #17	ENSGT00530000063564.b.e.b	ENSGT00940000156335.o #18	ENSGT00390000013727.d #19	ENSGT00910000147799	ENSGT01000000214413.b.a.a #20	ENSGT00940000154863.db.d	ENSGT00940000156305 #22	ENSGT00390000002837.m #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00910000147128	ENSGT00940000155931 #26	ENSGT00940000154639.n.a	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00940000154942.h.q.b	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384.h.a ##31	ENSGT00940000160614 #32	ENSGT00910000147968	ENSGT00910000146924	ENSGT00940000156162.C.k #33
Macaca	ANCESTRAL SPECIES	5	ENSGT00940000154259.l.c.a.a.b	ENSGT01030000234598.a.b	ENSGT00860000135711.a	ENSGT00940000153421.a.b #13	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00910000147422	ENSGT00950000183039.B.a #17	ENSGT00940000156335.o #18	ENSGT00390000013727.d #19	ENSGT00910000147799	ENSGT01000000214413.b.a.a #20	ENSGT00940000154863.db.d	ENSGT00940000156000.o.b	ENSGT00940000156305 #22	ENSGT00390000002837.m #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00910000147128	ENSGT00940000155931 #26	ENSGT00940000154639.n.a	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00940000154942.h.q.b	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384.h.a ##31	ENSGT00940000160614 #32	ENSGT00910000147968	ENSGT00910000146924	ENSGT00940000156162.C.k #33
Pig-tailed macaque	MODERN SPECIES	164	ENSMNEG00000007958	NAALADL2 (ENSMNEG00000036084)	ENSMNEG00000034366	TBL1XR1 (ENSMNEG00000000982) #13	KCNMB2 (ENSMNEG00000037391) #14	ZMAT3 (ENSMNEG00000036725) #15	PIK3CA (ENSMNEG00000033970) #16	ENSMNEG00000035824	KCNMB3 (ENSMNEG00000029975) #17	ENSMNEG00000044183 #18	MFN1 (ENSMNEG00000040994) #19	ENSMNEG00000010044	GNB4 (ENSMNEG00000028705) #20	ENSMNEG00000036158	ENSMNEG00000036357	ACTL6A (ENSMNEG00000031576) #22	ENSMNEG00000001870 #23	NDUFB5 (ENSMNEG00000000326) #24	ENSMNEG00000041949	USP13 (ENSMNEG00000037002) #25	ENSMNEG00000024585	PEX5L (ENSMNEG00000044236) #26	ENSMNEG00000042272
Macaca_a	ANCESTRAL SPECIES	5	ENSGT00940000159720.x	ENSGT00390000015332	ENSGT00940000155789	ENSGT00940000154259.l.c.a.a.b	ENSGT01030000234598.a.b	ENSGT00940000153421.a.b #13	ENSGT01100000263493.a.a.a.b.a.a.a.a.a.b.b.a	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00950000183039.B.a #17	ENSGT00940000156335.o #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156000.o.b	ENSGT00940000156305 #22	ENSGT00390000002837.m #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT01100000263509.a.a.b.b.a.b.a.a.a.a	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00940000154942.h.q.b	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384.h.a ##31	ENSGT00940000160614 #32	ENSGT00910000146924	ENSGT00940000156162.C.k #33	ENSGT00940000154552.b.g.a #34	ENSGT00940000156941 #35
Crab-eating macaque	MODERN SPECIES	11	ENSMFAG00000057081	ENSMFAG00000058101	TBL1XR1 (ENSMFAG00000007211) #13	ENSMFAG00000050846	ENSMFAG00000060621	KCNMB2 (ENSMFAG00000037847) #14	ZMAT3 (ENSMFAG00000021292) #15	PIK3CA (ENSMFAG00000045156) #16	KCNMB3 (ENSMFAG00000000185) #17	ZNF639 (ENSMFAG00000002403) #18	MFN1 (ENSMFAG00000003857) #19	GNB4 (ENSMFAG00000041470) #20	ENSMFAG00000030517	ENSMFAG00000065242	ENSMFAG00000054257	ACTL6A (ENSMFAG00000030153) #22	ENSMFAG00000053669 #23	NDUFB5 (ENSMFAG00000042220) #24	USP13 (ENSMFAG00000042834) #25	ENSMFAG00000061892	PEX5L (ENSMFAG00000036976) #26	ENSMFAG00000053927	TTC14 (ENSMFAG00000046249) #27	CCDC39 (ENSMFAG00000002267) #28	FXR1 (ENSMFAG00000040264) #30	DNAJC19 (ENSMFAG00000034041) ##31	ENSMFAG00000058781	SOX2 (ENSMFAG00000027781) #32	ENSMFAG00000003633	ATP11B (ENSMFAG00000035388) #33	MCCC1 (ENSMFAG00000000043) #35
Rhesus	MODERN SPECIES	11	NLGN1 (ENSMMUG00000004671)	ENSMMUG00000059733	NAALADL2 (ENSMMUG00000045509)	ENSMMUG00000010630	ENSMMUG00000059662	TBL1XR1 (ENSMMUG00000019597) #13	ENSMMUG00000055098	KCNMB2 (ENSMMUG00000014426) #14	ZMAT3 (ENSMMUG00000003216) #15	PIK3CA (ENSMMUG00000005188) #16	KCNMB3 (ENSMMUG00000005187) #17	ZNF639 (ENSMMUG00000023078) #18	MFN1 (ENSMMUG00000004079) #19	GNB4 (ENSMMUG00000004083) #20	ENSMMUG00000054028	ACTL6A (ENSMMUG00000009742) #22	MRPL47 (ENSMMUG00000009744) #23	NDUFB5 (ENSMMUG00000009746) #24	USP13 (ENSMMUG00000003594) #25	PEX5L (ENSMMUG00000003595) #26	ENSMMUG00000050512	ENSMMUG00000049713	TTC14 (ENSMMUG00000019656) #27	CCDC39 (ENSMMUG00000045200) #28	ENSMMUG00000013353	FXR1 (ENSMMUG00000012105) #30	DNAJC19 (ENSMMUG00000012104) ##31	ENSMMUG00000063235	ENSMMUG00000057005	ENSMMUG00000047232	ENSMMUG00000018530
Cercopithecinae_b	ANCESTRAL SPECIES		ENSGT00940000155789	ENSGT00940000154259.l.c.a.a.b	ENSGT01030000234598.a.b	ENSGT00940000153421.a.b.d #13	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00910000147422	ENSGT00950000183039.B.a #17	ENSGT00530000063564.b.e.b	ENSGT00940000156335.o #18	ENSGT00390000013727.d #19	ENSGT00910000147799	ENSGT01000000214413.b.a.a #20	ENSGT00940000154863.db.d	ENSGT00940000156305 #22	ENSGT00390000002837.m #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00910000147128	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00940000154942.h.q.b	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384.h.a ##31	ENSGT00940000160614 #32	ENSGT00910000147968	ENSGT00910000146924	ENSGT00940000156162.C.k #33	ENSGT00940000154552.b.g.a #34
Olive baboon	MODERN SPECIES	11	ENSPANG00000039756	ENSPANG00000037722	ENSPANG00000046346	ENSPANG00000036979	ENSPANG00000051236	ENSPANG00000036994	KCNMB2 (ENSPANG00000019971) #14	ZMAT3 (ENSPANG00000023167) #15	PIK3CA (ENSPANG00000023166) #16	KCNMB3 (ENSPANG00000023165) #17	ZNF639 (ENSPANG00000024157) #18	MFN1 (ENSPANG00000018156) #19	GNB4 (ENSPANG00000018882) #20	ENSPANG00000010712	ENSPANG00000048993	ACTL6A (ENSPANG00000024431) #22	ENSPANG00000008191 #23	NDUFB5 (ENSPANG00000008899) #24	USP13 (ENSPANG00000008384) #25	PEX5L (ENSPANG00000011898) #26	ENSPANG00000037628	TTC14 (ENSPANG00000011012) #27	CCDC39 (ENSPANG00000018158) #28	ENSPANG00000031815	ENSPANG00000042364	ENSPANG00000042486	FXR1 (ENSPANG00000011899) #30	DNAJC19 (ENSPANG00000034438) ##31	ENSPANG00000040162	ENSPANG00000044238	ENSPANG00000047546
Cercopithecinae_d	ANCESTRAL SPECIES	181			ENSGT01030000234598.a.b	ENSGT00940000153421.a.b.d #13	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00910000147422	ENSGT00950000183039.B.a #17	ENSGT00530000063564.b.e.b	ENSGT00940000156335.o #18	ENSGT00390000013727.d #19	ENSGT00910000147799	ENSGT01000000214413.b.a.a #20	ENSGT00940000154863.db.d	ENSGT00940000156305 #22	ENSGT00390000002837.m #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00910000147128	ENSGT00940000155931 #26
Sooty mangabey	MODERN SPECIES	271	DHX29 (ENSCATG00000036778)	MTREX (ENSCATG00000042153)	PLPP1 (ENSCATG00000029450)	ENSCATG00000019413	KCNMB2 (ENSCATG00000044097) #14	ZMAT3 (ENSCATG00000025137) #15	PIK3CA (ENSCATG00000036934) #16	KCNMB3 (ENSCATG00000036734) #17	ENSCATG00000009576	ENSCATG00000036560 #18	MFN1 (ENSCATG00000033458) #19	ENSCATG00000017028	GNB4 (ENSCATG00000008577) #20	ENSCATG00000029330	ENSCATG00000034615	ACTL6A (ENSCATG00000017467) #22	ENSCATG00000029931 #23	NDUFB5 (ENSCATG00000035869) #24	USP13 (ENSCATG00000032951) #25	ENSCATG00000022662	PEX5L (ENSCATG00000005455) #26
Drill	MODERN SPECIES	788			ENSMLEG00000044231	TBL1XR1 (ENSMLEG00000031785) #13	KCNMB2 (ENSMLEG00000037221) #14	ZMAT3 (ENSMLEG00000026279) #15	PIK3CA (ENSMLEG00000034006) #16	ENSMLEG00000025740	KCNMB3 (ENSMLEG00000032189) #17	ENSMLEG00000034189	ENSMLEG00000034855 #18	MFN1 (ENSMLEG00000033980) #19	ENSMLEG00000025437	GNB4 (ENSMLEG00000013416) #20	ENSMLEG00000039833	ACTL6A (ENSMLEG00000034199) #22	ENSMLEG00000035312 #23	NDUFB5 (ENSMLEG00000039784) #24
Platyrrhini	ANCESTRAL SPECIES	43									ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00950000183039.B.a #17	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837.r #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00910000147128	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384.h.a.c.b ##31	ENSGT00940000156162.C.k #33	ENSGT00940000154552.b.f #34	ENSGT00940000156941.j #35	ENSGT00950000182899.C.a #36	ENSGT00940000161734	ENSGT00940000159676 #37
Cebidae	ANCESTRAL SPECIES	14									ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00950000183039.B.a #17	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837.r #23	ENSGT00390000002837.q #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384.h.a.c.b.a ##31	ENSGT00940000160614 #32	ENSGT00940000156162.C.k #33	ENSGT00940000154552.b.f #34	ENSGT00940000156941.j #35	ENSGT00950000182899.C.a #36	ENSGT00940000161734
Cebidae_a	ANCESTRAL SPECIES	14									ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00950000183039.B.a #17	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837.r #23	ENSGT00390000014814.a.b.a.a.b	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384.h.a.c.b.a.a ##31	ENSGT00940000160614 #32	ENSGT00940000156162.C.k #33	ENSGT00940000154552.b.f #34	ENSGT00940000156941.j #35	ENSGT00950000182899.C.a #36	ENSGT00940000161734
Capuchin	MODERN SPECIES	353								KCNMB2 (ENSCCAG00000028554) #14	ZMAT3 (ENSCCAG00000036721) #15	ENSCCAG00000037391	PIK3CA (ENSCCAG00000028165) #16	ENSCCAG00000034140 #17	ZNF639 (ENSCCAG00000025690) #18	MFN1 (ENSCCAG00000021450) #19	GNB4 (ENSCCAG00000025823) #20	ACTL6A (ENSCCAG00000029449) #22	MRPL47 (ENSCCAG00000037348) #23	ENSCCAG00000002926	NDUFB5 (ENSCCAG00000022016) #24	USP13 (ENSCCAG00000021400) #25	PEX5L (ENSCCAG00000026024) #26	TTC14 (ENSCCAG00000025759) #27	CCDC39 (ENSCCAG00000021606) #28
Bolivian squirrel monkey	MODERN SPECIES	62									KCNMB2 (ENSSBOG00000024312) #14	ZMAT3 (ENSSBOG00000033332) #15	PIK3CA (ENSSBOG00000020045) #16	KCNMB3 (ENSSBOG00000022343) #17	ZNF639 (ENSSBOG00000025502) #18	MFN1 (ENSSBOG00000034184) #19	GNB4 (ENSSBOG00000029068) #20	ACTL6A (ENSSBOG00000027162) #22	MRPL47 (ENSSBOG00000018241) #23	ENSSBOG00000016971	ENSSBOG00000029840 #24	USP13 (ENSSBOG00000026837) #25	PEX5L (ENSSBOG00000027789) #26	TTC14 (ENSSBOG00000024686) #27	CCDC39 (ENSSBOG00000027250) #28	FXR1 (ENSSBOG00000033567) #30	ENSSBOG00000026921 ##31	ATP11B (ENSSBOG00000025969) #33	DCUN1D1 (ENSSBOG00000028062) #34	MCCC1 (ENSSBOG00000026219) #35	ENSSBOG00000021035 #36	MCF2L2 (ENSSBOG00000029425)	KLHL6 (ENSSBOG00000020503)
Marmoset	MODERN SPECIES	6							ENSCJAG00000081774	KCNMB2 (ENSCJAG00000070092) #14	ENSCJAG00000086748	ZMAT3 (ENSCJAG00000013399) #15	PIK3CA (ENSCJAG00000013294) #16	GNB4 (ENSCJAG00000064977) #20	ENSCJAG00000069983 #17	ZNF639 (ENSCJAG00000013246) #18	MFN1 (ENSCJAG00000013155) #19	ACTL6A (ENSCJAG00000013036) #22	ENSCJAG00000013028 #23	NDUFB5 (ENSCJAG00000013015) #24	ENSCJAG00000039957	USP13 (ENSCJAG00000012999) #25	ENSCJAG00000077201	PEX5L (ENSCJAG00000012957) #26	ENSCJAG00000081830	TTC14 (ENSCJAG00000012923) #27	CCDC39 (ENSCJAG00000012901) #28	FXR1 (ENSCJAG00000012802) #30	ENSCJAG00000012795 ##31	ENSCJAG00000069793	ENSCJAG00000080211	SOX2 (ENSCJAG00000008401) #32	ENSCJAG00000070332
Mas night monkey	MODERN SPECIES	796									KCNMB2 (ENSANAG00000029970) #14	ZMAT3 (ENSANAG00000035673) #15	PIK3CA (ENSANAG00000027469) #16	KCNMB3 (ENSANAG00000030173) #17	ZNF639 (ENSANAG00000023473) #18	MFN1 (ENSANAG00000032522) #19	GNB4 (ENSANAG00000025913) #20	ACTL6A (ENSANAG00000028039) #22	ENSANAG00000029476 #23	NDUFB5 (ENSANAG00000026829) #24	ENSANAG00000026189 #25	ENSANAG00000024062	ENSANAG00000031235 #26
Tarsier	MODERN SPECIES	1197													ENSTSYG00000036806 #18	MFN1 (ENSTSYG00000002404) #19	GNB4 (ENSTSYG00000030980) #20	ACTL6A (ENSTSYG00000001527) #22	MRPL47 (ENSTSYG00000001541) #23	NDUFB5 (ENSTSYG00000001558) #24	USP13 (ENSTSYG00000009222) #25	ENSTSYG00000027361
Strepsirrhini	ANCESTRAL SPECIES	1	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00940000153421.a.b #13	ENSGT00860000135711	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00950000183039.B.a #17	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00960000190585	ENSGT00390000009980.p #24	ENSGT00940000157401 #25	ENSGT00910000147128	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384.h.a ##31	ENSGT00940000160614 #32	ENSGT00910000146924	ENSGT00940000156162.C.k #33	ENSGT00940000154552.b #34	ENSGT00940000156941 #35
Lemuriformes	ANCESTRAL SPECIES	9	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00940000153421.a.b #13	ENSGT00860000135711	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00950000183039.B.a #17	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00960000190585	ENSGT00390000009980.p #24	ENSGT00940000157401 #25	ENSGT00910000147128	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384.h.a.g.a ##31	ENSGT00940000160614 #32	ENSGT00910000146924	ENSGT00940000156162.C.k #33	ENSGT00940000154552.b #34	ENSGT00940000156941 #35
Lemuriformes_a	ANCESTRAL SPECIES	9	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00940000153421.a.b #13	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00950000183039.B.a #17	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00960000190585	ENSGT00390000009980.p #24	ENSGT00940000157401 #25	ENSGT00910000147128	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384.h.a.g.a ##31	ENSGT00940000160614 #32	ENSGT00940000156162.C.k #33	ENSGT00940000154552.b #34	ENSGT00940000156941 #35	ENSGT00950000182899.C.a #36
Greater bamboo lemur	MODERN SPECIES	819															ENSPSMG00000025607	ACTL6A (ENSPSMG00000025614) #22	MRPL47 (ENSPSMG00000025629) #23	ENSPSMG00000025631	NDUFB5 (ENSPSMG00000025638) #24	USP13 (ENSPSMG00000025659) #25	PEX5L (ENSPSMG00000025666) #26	ENSPSMG00000025669
Coquerels sifaka	MODERN SPECIES	162	RAVER2 (ENSPCOG00000028379)	JAK1 (ENSPCOG00000018189)	ENSPCOG00000025120	DNAJC6 (ENSPCOG00000021196)	LEPROT (ENSPCOG00000027148)	LEPR (ENSPCOG00000017023)	ENSPCOG00000016467	KCNMB2 (ENSPCOG00000021563) #14	ZMAT3 (ENSPCOG00000022835) #15	PIK3CA (ENSPCOG00000019539) #16	KCNMB3 (ENSPCOG00000006968) #17	ZNF639 (ENSPCOG00000025183) #18	MFN1 (ENSPCOG00000018204) #19	GNB4 (ENSPCOG00000023050) #20	ENSPCOG00000023805	ACTL6A (ENSPCOG00000027739) #22	MRPL47 (ENSPCOG00000019367) #23	ENSPCOG00000025389 #24	ENSPCOG00000023588 #24	USP13 (ENSPCOG00000000179) #25	ENSPCOG00000028880	PEX5L (ENSPCOG00000002922) #26	TTC14 (ENSPCOG00000027629) #27	CCDC39 (ENSPCOG00000018971) #28	ENSPCOG00000026996	ENSPCOG00000025037	FXR1 (ENSPCOG00000020057) #30	DNAJC19 (ENSPCOG00000022644) ##31
Mouse lemur	MODERN SPECIES		NCEH1 (ENSMICG00000049131)	ECT2 (ENSMICG00000049582)	SPATA16 (ENSMICG00000049271)	NLGN1 (ENSMICG00000049574)	NAALADL2 (ENSMICG00000048670)	ENSMICG00000048980	TBL1XR1 (ENSMICG00000049448) #13	ENSMICG00000049180	KCNMB2 (ENSMICG00000049491) #14	ZMAT3 (ENSMICG00000049501) #15	PIK3CA (ENSMICG00000049155) #16	KCNMB3 (ENSMICG00000048999) #17	ENSMICG00000048810 #18	MFN1 (ENSMICG00000049257) #19	GNB4 (ENSMICG00000049251) #20	ACTL6A (ENSMICG00000049032) #22	MRPL47 (ENSMICG00000049377) #23	ENSMICG00000049551 #24	USP13 (ENSMICG00000049124) #25	ENSMICG00000049219	PEX5L (ENSMICG00000048938) #26	TTC14 (ENSMICG00000049351) #27	CCDC39 (ENSMICG00000048849) #28	ENSMICG00000049410	ENSMICG00000048978 #30	ENSMICG00000049008 ##31	ENSMICG00000049314	ENSMICG00000049506	SOX2 (ENSMICG00000049239) #32	ENSMICG00000048904	ATP11B (ENSMICG00000049475) #33
Bushbaby	MODERN SPECIES	193	NCEH1 (ENSOGAG00000000976)	ECT2 (ENSOGAG00000003365)	SPATA16 (ENSOGAG00000001358)	NLGN1 (ENSOGAG00000012761)	NAALADL2 (ENSOGAG00000005833)	TBL1XR1 (ENSOGAG00000006708) #13	ENSOGAG00000034666	KCNMB2 (ENSOGAG00000015737) #14	ZMAT3 (ENSOGAG00000003252) #15	ENSOGAG00000027303	PIK3CA (ENSOGAG00000006592) #16	KCNMB3 (ENSOGAG00000006601) #17	ENSOGAG00000034726 #18	MFN1 (ENSOGAG00000000876) #19	GNB4 (ENSOGAG00000000877) #20	ACTL6A (ENSOGAG00000016951) #22	MRPL47 (ENSOGAG00000016957) #23	NDUFB5 (ENSOGAG00000016966) #24	USP13 (ENSOGAG00000013871) #25	PEX5L (ENSOGAG00000013877) #26	ENSOGAG00000026587	TTC14 (ENSOGAG00000006895) #27	CCDC39 (ENSOGAG00000006897) #28
Laurasiatheria	ANCESTRAL SPECIES	2	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00860000135711	ENSGT00940000153421.a.b #13	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00950000183039.B.a #17	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00910000147128	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384.h.a ##31	ENSGT00940000160614 #32	ENSGT00940000156162.C.k #33	ENSGT00940000154552 #34	ENSGT00940000156941 #35	ENSGT00950000182899.C.a #36	ENSGT00940000161734
Laurasiatheria_a	ANCESTRAL SPECIES	3	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00860000135711	ENSGT00940000153421.a.b #13	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00950000183039.B.a #17	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00910000147128	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384.h.a ##31	ENSGT00940000160614 #32	ENSGT00940000156162.C.k #33	ENSGT00940000154552 #34	ENSGT00940000156941 #35	ENSGT00950000182899.C.a #36	ENSGT00940000161734
Artiodactyla	ANCESTRAL SPECIES	2	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00860000135711	ENSGT00940000153421.a.b #13	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00950000183039.B.a #17	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00910000147128	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384.g ##31	ENSGT00940000160614 #32	ENSGT00940000156162.C.k #33	ENSGT00940000154552 #34	ENSGT00940000156941 #35	ENSGT00950000182899.C.a #36	ENSGT00940000161734
Suina	ANCESTRAL SPECIES	1	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00940000153421.a.b #13	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00950000183039.B.a #17	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00910000147128	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384.h.a ##31	ENSGT00940000160614 #32	ENSGT00940000156162.C.k #33	ENSGT00940000154552 #34	ENSGT00940000156941 #35	ENSGT00940000164015	ENSGT00940000161734
Chacoan peccary	MODERN SPECIES	944	TNFSF10 (ENSCWAG00000012722)	NCEH1 (ENSCWAG00000012786)	ECT2 (ENSCWAG00000012868)	SPATA16 (ENSCWAG00000013214)	NLGN1 (ENSCWAG00000013308)	NAALADL2 (ENSCWAG00000013390)	TBL1XR1 (ENSCWAG00000013528) #13	ENSCWAG00000013558	KCNMB2 (ENSCWAG00000013602) #14	ZMAT3 (ENSCWAG00000013667) #15	PIK3CA (ENSCWAG00000013715) #16	KCNMB3 (ENSCWAG00000013862) #17	ZNF639 (ENSCWAG00000014049) #18	MFN1 (ENSCWAG00000014074) #19	GNB4 (ENSCWAG00000014110) #20	ACTL6A (ENSCWAG00000014148) #22	MRPL47 (ENSCWAG00000014208) #23	ENSCWAG00000014342	ENSCWAG00000014364 #24	USP13 (ENSCWAG00000014441) #25	ENSCWAG00000014493	PEX5L (ENSCWAG00000014594) #26	TTC14 (ENSCWAG00000018170) #27	CCDC39 (ENSCWAG00000018221) #28	FXR1 (ENSCWAG00000010854) #30	DNAJC19 (ENSCWAG00000011201) ##31	SOX2 (ENSCWAG00000011284) #32	ENSCWAG00000011322	ATP11B (ENSCWAG00000011359) #33	DCUN1D1 (ENSCWAG00000011613) #34	MCCC1 (ENSCWAG00000011692) #35
Pig	MODERN SPECIES	4	ENSSSCG00000062281	ENSSSCG00000011758	ENSSSCG00000044757	NAALADL2 (ENSSSCG00000023871)	TBL1XR1 (ENSSSCG00000011760) #13	ENSSSCG00000043076	ENSSSCG00000047877	KCNMB2 (ENSSSCG00000011761) #14	ZMAT3 (ENSSSCG00000033860) #15	PIK3CA (ENSSSCG00000030413) #16	KCNMB3 (ENSSSCG00000029240) #17	ENSSSCG00000031922	ZNF639 (ENSSSCG00000038443) #18	MFN1 (ENSSSCG00000039285) #19	GNB4 (ENSSSCG00000037583) #20	ACTL6A (ENSSSCG00000011762) #22	MRPL47 (ENSSSCG00000011763) #23	NDUFB5 (ENSSSCG00000011764) #24	USP13 (ENSSSCG00000011765) #25	PEX5L (ENSSSCG00000011766) #26	TTC14 (ENSSSCG00000011767) #27	CCDC39 (ENSSSCG00000011768) #28	FXR1 (ENSSSCG00000011769) #30	DNAJC19 (ENSSSCG00000011770) ##31	ENSSSCG00000043321	ENSSSCG00000052379	SOX2 (ENSSSCG00000062993) #32	ENSSSCG00000062332	ENSSSCG00000061239	ENSSSCG00000055503	ATP11B (ENSSSCG00000011772) #33
Artiodactyla_a	ANCESTRAL SPECIES	8	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00860000135711	ENSGT00940000153421.a.b #13	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00950000183039.B.a #17	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00910000147128	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384.g ##31	ENSGT00940000160614 #32	ENSGT00940000156162.C.k #33	ENSGT00940000154552 #34	ENSGT00940000156941 #35	ENSGT00950000182899.C.a #36	ENSGT00940000161734
Artiodactyla_b	ANCESTRAL SPECIES	6	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00860000135711	ENSGT00940000153421.a.b #13	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00950000183039.B.a #17	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00910000147128	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384.g ##31	ENSGT00940000160614 #32	ENSGT00940000156162.C.k #33	ENSGT00940000154552 #34	ENSGT00940000156941 #35	ENSGT00950000182899.C.a #36	ENSGT00940000164015
Cetacea	ANCESTRAL SPECIES	10	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT01030000239371	ENSGT00940000153421.a.b #13	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00950000183039.B.a #17	ENSGT00940000156335.a #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00910000147128	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384.g ##31	ENSGT00940000160614 #32	ENSGT00940000156162.C.k #33	ENSGT00940000154552 #34	ENSGT00940000156941 #35	ENSGT00950000182899.C.a #36	ENSGT00940000159676 #37
Odontoceti	ANCESTRAL SPECIES	9	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT01030000239371	ENSGT00940000153421.a.b #13	ENSGT00950000183039.B.b.a #14	ENSGT00960000192355	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00950000183039.B.a #17	ENSGT00940000156335.a #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384.g ##31	ENSGT00940000160614 #32	ENSGT00940000156162.C.k #33	ENSGT00940000154552 #34	ENSGT00940000156941 #35	ENSGT00950000182899.C.a #36	ENSGT00940000159676 #37	ENSGT00940000161734
Sperm whale	MODERN SPECIES		NCEH1 (ENSPCTG00005002205)	ECT2 (ENSPCTG00005002261)	SPATA16 (ENSPCTG00005002355)	NLGN1 (ENSPCTG00005002376)	NAALADL2 (ENSPCTG00005002399)	ENSPCTG00005002425	ENSPCTG00005002436	TBL1XR1 (ENSPCTG00005002457) #13	KCNMB2 (ENSPCTG00005002495) #14	ENSPCTG00005002512	ZMAT3 (ENSPCTG00005002527) #15	PIK3CA (ENSPCTG00005002544) #16	ZNF639 (ENSPCTG00005002565) #18	MFN1 (ENSPCTG00005002577) #19	GNB4 (ENSPCTG00005002602) #20	ACTL6A (ENSPCTG00005002626) #22	MRPL47 (ENSPCTG00005002655) #23	NDUFB5 (ENSPCTG00005002691) #24	USP13 (ENSPCTG00005002736) #25	PEX5L (ENSPCTG00005002908) #26	ENSPCTG00005003697	ENSPCTG00005003702	TTC14 (ENSPCTG00005003714) #27	CCDC39 (ENSPCTG00005003737) #28	FXR1 (ENSPCTG00005003785) #30	ENSPCTG00005003919 ##31	SOX2 (ENSPCTG00005003937) #32	ENSPCTG00005003941	ENSPCTG00005003956	ATP11B (ENSPCTG00005004005) #33	ENSPCTG00005005564
Odontoceti_a	ANCESTRAL SPECIES	8	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00940000153421.a.b #13	ENSGT00950000183039.B.b.a #14	ENSGT00960000192355	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00950000183039.B.a #17	ENSGT00500000045333.c.b.b	ENSGT00940000156335.a #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384.g ##31	ENSGT00940000160614 #32	ENSGT00940000156162.C.k #33	ENSGT00940000154552 #34	ENSGT00940000156941 #35	ENSGT00950000182899.C.a #36	ENSGT00940000159676 #37	ENSGT00940000161734
Dolphin	MODERN SPECIES	494																ACTL6A (ENSTTRG00000008907) #22	MRPL47 (ENSTTRG00000008909) #23	NDUFB5 (ENSTTRG00000008910) #24	USP13 (ENSTTRG00000008911) #25	PEX5L (ENSTTRG00000008912) #26
Odontoceti_b	ANCESTRAL SPECIES	9	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00940000153421.a.b #13	ENSGT00950000183039.B.b.a #14	ENSGT00960000192355	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00500000045333.c.b.b	ENSGT00940000156335.a #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00940000155453.k.b	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384.g ##31	ENSGT00940000160614 #32	ENSGT00390000018829.g.b.c.a.a	ENSGT00940000156162.C.k #33	ENSGT00940000154552 #34	ENSGT00390000001413.d	ENSGT00990000211790
Monodontidae	ANCESTRAL SPECIES	23	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT00390000006503.a.l	ENSGT01030000234598.a.b	ENSGT00940000153421.a.b #13	ENSGT00950000183039.B.b.a #14	ENSGT00960000192355	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00500000045333.c.b.b	ENSGT00940000156335.a #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00510000046985.h.a.jd	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00940000155453.k.b	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384.g ##31
Narwhal	MODERN SPECIES	297	NLGN1 (ENSMMNG00015002410)	ENSMMNG00015002378	NAALADL2 (ENSMMNG00015002350)	ENSMMNG00015002332	TBL1XR1 (ENSMMNG00015002265) #13	ENSMMNG00015002145	KCNMB2 (ENSMMNG00015002126) #14	ENSMMNG00015002111	ZMAT3 (ENSMMNG00015002091) #15	PIK3CA (ENSMMNG00015002009) #16	ENSMMNG00015001952	ENSMMNG00015001936 #18	MFN1 (ENSMMNG00015001899) #19	GNB4 (ENSMMNG00015001871) #20	ENSMMNG00015001853	ACTL6A (ENSMMNG00015001826) #22	MRPL47 (ENSMMNG00015001795) #23	ENSMMNG00015001756 #24	USP13 (ENSMMNG00015001699) #25	PEX5L (ENSMMNG00015001374) #26	TTC14 (ENSMMNG00015001171) #27	CCDC39 (ENSMMNG00015001064) #28	FXR1 (ENSMMNG00015000882) #30	ENSMMNG00015000810 ##31	ENSMMNG00015000787	SOX2 (ENSMMNG00015000779) #32	ENSMMNG00015000768	ATP11B (ENSMMNG00015000694) #33	ENSMMNG00015000676	DCUN1D1 (ENSMMNG00015000639) #34	ENSMMNG00015000610
Beluga whale	MODERN SPECIES	111	SPATA16 (ENSDLEG00000014859)	NLGN1 (ENSDLEG00000014852)	ENSDLEG00000014835	NAALADL2 (ENSDLEG00000014814)	ENSDLEG00000014801	TBL1XR1 (ENSDLEG00000014786) #13	KCNMB2 (ENSDLEG00000014764) #14	ENSDLEG00000014756	ZMAT3 (ENSDLEG00000014744) #15	PIK3CA (ENSDLEG00000014721) #16	ENSDLEG00000014709	ZNF639 (ENSDLEG00000014693) #18	MFN1 (ENSDLEG00000014635) #19	GNB4 (ENSDLEG00000014597) #20	ENSDLEG00000014581	ACTL6A (ENSDLEG00000014465) #22	MRPL47 (ENSDLEG00000014407) #23	ENSDLEG00000014388 #24	USP13 (ENSDLEG00000014351) #25	PEX5L (ENSDLEG00000012327) #26	TTC14 (ENSDLEG00000012062) #27	CCDC39 (ENSDLEG00000011994) #28	ENSDLEG00000011974	FXR1 (ENSDLEG00000011932) #30	ENSDLEG00000011911 ##31	ENSDLEG00000011882	SOX2 (ENSDLEG00000011877) #32	ENSDLEG00000011867	ATP11B (ENSDLEG00000011729) #33	ENSDLEG00000011713	DCUN1D1 (ENSDLEG00000011699) #34
Vaquita	MODERN SPECIES	15	ENSPSNG00000004415	NAALADL2 (ENSPSNG00000004440)	ENSPSNG00000004485	ENSPSNG00000004503	ENSPSNG00000004516	TBL1XR1 (ENSPSNG00000004528) #13	KCNMB2 (ENSPSNG00000000137) #14	ENSPSNG00000000161	ZMAT3 (ENSPSNG00000000179) #15	ENSPSNG00000000193	PIK3CA (ENSPSNG00000000243) #16	ENSPSNG00000000310	ZNF639 (ENSPSNG00000000337) #18	MFN1 (ENSPSNG00000000400) #19	GNB4 (ENSPSNG00000000439) #20	ACTL6A (ENSPSNG00000000482) #22	ENSPSNG00000000504	MRPL47 (ENSPSNG00000000528) #23	NDUFB5 (ENSPSNG00000000597) #24	USP13 (ENSPSNG00000000641) #25	PEX5L (ENSPSNG00000000991) #26	ENSPSNG00000001427	TTC14 (ENSPSNG00000001461) #27	CCDC39 (ENSPSNG00000001552) #28	ENSPSNG00000001620	FXR1 (ENSPSNG00000001732) #30	ENSPSNG00000001824 ##31	SOX2 (ENSPSNG00000001850) #32	ENSPSNG00000001868	ENSPSNG00000001895	ENSPSNG00000001911 #33
Blue whale	DUPLICATION
Blue whale	MODERN SPECIES	15	ENSBMSG00010003587	ZMAT3 (ENSBMSG00010003591) #15	FZD5 (ENSBMSG00010003645)	ENSBMSG00010003648	PLEKHM3 (ENSBMSG00010003654)	ENSBMSG00010003667	CRYGD (ENSBMSG00010003676)	CRYGC (ENSBMSG00010003687)	ENSBMSG00010003697	CRYGB (ENSBMSG00010003704)	CRYGA (ENSBMSG00010003714)	ENSBMSG00010003722	ZNF639 (ENSBMSG00010003730) #18	MFN1 (ENSBMSG00010003738) #19	GNB4 (ENSBMSG00010003748) #20	ENSBMSG00010003758 #22	MRPL47 (ENSBMSG00010003775) #23	NDUFB5 (ENSBMSG00010003799) #24	USP13 (ENSBMSG00010003825) #25	ENSBMSG00010003863	PEX5L (ENSBMSG00010003978) #26	TTC14 (ENSBMSG00010004833) #27	CCDC39 (ENSBMSG00010004860) #28	ENSBMSG00010004914 #30	ENSBMSG00010004956 ##31	SOX2 (ENSBMSG00010004972) #32	ATP11B (ENSBMSG00010006023) #33	DCUN1D1 (ENSBMSG00010006245) #34	ENSBMSG00010006269	ENSBMSG00010006280	MCCC1 (ENSBMSG00010006304) #35
Blue whale	MODERN SPECIES	2	SIRT5 (ENSBMSG00010008270)	NOL7 (ENSBMSG00010008285)	RANBP9 (ENSBMSG00010008301)	MCUR1 (ENSBMSG00010008331)	RNF182 (ENSBMSG00010008347)	ENSBMSG00010008353	ENSBMSG00010008364	ENSBMSG00010008373	JARID2 (ENSBMSG00010008385)	DTNBP1 (ENSBMSG00010008422)	ENSBMSG00010008488	MYLIP (ENSBMSG00010008495)	GMPR (ENSBMSG00010008446)	ATXN1 (ENSBMSG00010008456)	STMND1 (ENSBMSG00010008487)	ENSBMSG00010008501 #22	RBM24 (ENSBMSG00010008527)	CAP2 (ENSBMSG00010008605)	FAM8A1 (ENSBMSG00010008915)	NUP153 (ENSBMSG00010008959)	KIF13A (ENSBMSG00010009044)	NHLRC1 (ENSBMSG00010009156)	ENSBMSG00010009160	TPMT (ENSBMSG00010009170)	KDM1B (ENSBMSG00010009201)	DEK (ENSBMSG00010009290)	RNF144B (ENSBMSG00010009325)	ENSBMSG00010009341	ENSBMSG00010009344	ID4 (ENSBMSG00010009351)	MBOAT1 (ENSBMSG00010009363)
Pecora	ANCESTRAL SPECIES	8	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00860000135711	ENSGT00940000153421.a.b #13	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00950000183039.B.a #17	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00910000147128	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384.g ##31	ENSGT00940000160614 #32	ENSGT00940000156162.C.k #33	ENSGT00940000154552 #34	ENSGT00940000156941 #35	ENSGT00950000182899.C.a #36	ENSGT00940000159676 #37
Yarkand deer	MODERN SPECIES	10	ENSCHYG00000004463	ENSCHYG00000022159	NLGN1 (ENSCHYG00000022086)	NAALADL2 (ENSCHYG00000021681)	ENSCHYG00000021620	ENSCHYG00000021600	TBL1XR1 (ENSCHYG00000021350) #13	ENSCHYG00000021293	KCNMB2 (ENSCHYG00000021244) #14	ZMAT3 (ENSCHYG00000021162) #15	PIK3CA (ENSCHYG00000020926) #16	ENSCHYG00000020552 #17	ZNF639 (ENSCHYG00000020480) #18	MFN1 (ENSCHYG00000020157) #19	GNB4 (ENSCHYG00000020053) #20	ACTL6A (ENSCHYG00000019950) #22	MRPL47 (ENSCHYG00000019750) #23	NDUFB5 (ENSCHYG00000019479) #24	USP13 (ENSCHYG00000018967) #25	PEX5L (ENSCHYG00000017068) #26	ENSCHYG00000016977	TTC14 (ENSCHYG00000016786) #27	CCDC39 (ENSCHYG00000016666) #28	FXR1 (ENSCHYG00000015742) #30	DNAJC19 (ENSCHYG00000015489) ##31	ATP11B (ENSCHYG00000013977) #33	ENSCHYG00000013883	DCUN1D1 (ENSCHYG00000013798) #34	ENSCHYG00000013773	MCCC1 (ENSCHYG00000013336) #35	LAMP3 (ENSCHYG00000013102)
Percora_a	ANCESTRAL SPECIES	7	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00860000135711	ENSGT00940000153421.a.b #13	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00950000183039.B.a #17	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00910000147128	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384.g ##31	ENSGT00940000160614 #32	ENSGT00940000156162.C.k #33	ENSGT00940000154552 #34	ENSGT00940000156941 #35	ENSGT00950000182899.C.a #36	ENSGT00940000159676 #37
Siberian musk deer	MODERN SPECIES	139	SPATA16 (ENSMMSG00000003744)	ENSMMSG00000003725	ENSMMSG00000003711	NLGN1 (ENSMMSG00000003692)	ENSMMSG00000003679	NAALADL2 (ENSMMSG00000003624)	TBL1XR1 (ENSMMSG00000003575) #13	KCNMB2 (ENSMMSG00000003557) #14	ENSMMSG00000003544	ZMAT3 (ENSMMSG00000003531) #15	PIK3CA (ENSMMSG00000003505) #16	KCNMB3 (ENSMMSG00000003476) #17	ZNF639 (ENSMMSG00000003462) #18	MFN1 (ENSMMSG00000003440) #19	GNB4 (ENSMMSG00000003419) #20	ACTL6A (ENSMMSG00000003389) #22	MRPL47 (ENSMMSG00000003361) #23	NDUFB5 (ENSMMSG00000003341) #24	USP13 (ENSMMSG00000003298) #25	PEX5L (ENSMMSG00000001803) #26	TTC14 (ENSMMSG00000001675) #27	CCDC39 (ENSMMSG00000001595) #28	ENSMMSG00000001203 #30	ENSMMSG00000001124 ##31	ENSMMSG00000001107	SOX2 (ENSMMSG00000001102) #32	ATP11B (ENSMMSG00000000997) #33	DCUN1D1 (ENSMMSG00000000928) #34	MCCC1 (ENSMMSG00000000836) #35	ENSMMSG00000000791 #36	B3GNT5 (ENSMMSG00000000777) #37
Bovidae	ANCESTRAL SPECIES	9	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00860000135711	ENSGT00940000153421.a.b #13	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00950000183039.B.a #17	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00910000147128	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384.g ##31	ENSGT00940000160614 #32	ENSGT00940000156162.C.k #33	ENSGT00940000154552 #34	ENSGT00940000156941 #35	ENSGT00950000182899.C.a #36	ENSGT00940000159676 #37
Bovinae	ANCESTRAL SPECIES	6	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00860000135711	ENSGT00940000153421.a.b #13	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00950000183039.B.a #17	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384.g ##31	ENSGT00940000160614 #32	ENSGT00940000156162.C.k #33	ENSGT00940000154552 #34	ENSGT00940000156941 #35	ENSGT00950000182899.C.a #36	ENSGT00940000159676 #37	ENSGT00940000153525.g.b.a.n
Bos	ANCESTRAL SPECIES	7	ENSGT00390000015332	ENSGT00940000155789	ENSGT01100000263481.n.a.a.a.b.a.b.b.b.a.a.a.a	ENSGT01100000263481.n.a.b.a.a.b.b.b.a	ENSGT00990000205077	ENSGT01030000234598.a.b	ENSGT00860000135711	ENSGT00940000153421.a.b #13	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00950000183039.B.a #17	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931.f #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384.g ##31	ENSGT00940000156162.C.k #33	ENSGT00940000154552 #34	ENSGT00940000156941 #35	ENSGT00950000182899.C.a #36	ENSGT00940000159676 #37	ENSGT00940000153525.g.b.a.n	ENSGT00940000161734
Bos_a	ANCESTRAL SPECIES	5	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01100000263481.n.a.a.a.b.a.b.b.b.a.a.a.a	ENSGT01100000263481.n.a.b.a.a.b.b.b.a	ENSGT00990000205077	ENSGT01030000234598.a.b	ENSGT00940000153421.a.b #13	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00950000183039.B.a #17	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931.f #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384.g ##31	ENSGT00940000156162.C.k #33	ENSGT00940000154552 #34	ENSGT00940000156941 #35	ENSGT00950000182899.C.a #36	ENSGT00940000159676 #37	ENSGT00940000153525.g.b.a.n	ENSGT00940000161734
Wild yak	MODERN SPECIES	495								KCNMB2 (ENSBMUG00000016601) #14	ZMAT3 (ENSBMUG00000016617) #15	PIK3CA (ENSBMUG00000016649) #16	ENSBMUG00000016675 #17	ENSBMUG00000016679	ZNF639 (ENSBMUG00000016692) #18	MFN1 (ENSBMUG00000016720) #19	GNB4 (ENSBMUG00000016733) #20	ACTL6A (ENSBMUG00000016746) #22	MRPL47 (ENSBMUG00000016765) #23	NDUFB5 (ENSBMUG00000016813) #24	USP13 (ENSBMUG00000016857) #25	PEX5L (ENSBMUG00000017113) #26	TTC14 (ENSBMUG00000017289) #27	CCDC39 (ENSBMUG00000017317) #28	FXR1 (ENSBMUG00000017444) #30	ENSBMUG00000017548 ##31	ENSBMUG00000017572	ATP11B (ENSBMUG00000017711) #33	DCUN1D1 (ENSBMUG00000017739) #34	MCCC1 (ENSBMUG00000017803) #35	ENSBMUG00000017850 #36	MCF2L2 (ENSBMUG00000017904)	ENSBMUG00000017918
Domestic yak	MODERN SPECIES		ENSBGRG00000003486	NLGN1 (ENSBGRG00000003457)	ENSBGRG00000003453	ENSBGRG00000003433	NAALADL2 (ENSBGRG00000003389)	TBL1XR1 (ENSBGRG00000003307) #13	ENSBGRG00000003290	KCNMB2 (ENSBGRG00000003278) #14	ZMAT3 (ENSBGRG00000003264) #15	PIK3CA (ENSBGRG00000003231) #16	ENSBGRG00000003201 #17	ENSBGRG00000003193	ENSBGRG00000003185	MFN1 (ENSBGRG00000003142) #19	GNB4 (ENSBGRG00000003113) #20	ACTL6A (ENSBGRG00000003086) #22	MRPL47 (ENSBGRG00000003051) #23	NDUFB5 (ENSBGRG00000003013) #24	USP13 (ENSBGRG00000002861) #25	ENSBGRG00000002451 #26	TTC14 (ENSBGRG00000002327) #27	CCDC39 (ENSBGRG00000002146) #28	FXR1 (ENSBGRG00000001900) #30	DNAJC19 (ENSBGRG00000001844) ##31	ATP11B (ENSBGRG00000001781) #33	DCUN1D1 (ENSBGRG00000001763) #34	MCCC1 (ENSBGRG00000001725) #35	ENSBGRG00000001692 #36	B3GNT5 (ENSBGRG00000001683) #37	ENSBGRG00000001679	MCF2L2 (ENSBGRG00000001502)
Bos_b	ANCESTRAL SPECIES	5	ENSGT00940000161884.d	ENSGT00940000155789	ENSGT01100000263481.n.a.a.a.b.a.b.b.b.a.a.a.a	ENSGT01100000263481.n.a.b.a.a.b.b.b.a	ENSGT00990000205077	ENSGT01030000234598.a.b	ENSGT00860000135711	ENSGT00940000153421.a.b #13	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00950000183039.B.a #17	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931.f #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384.g ##31	ENSGT00940000156162.C.k #33	ENSGT00940000154552 #34	ENSGT00940000156941 #35	ENSGT00950000182899.C.a #36	ENSGT00940000159676 #37	ENSGT00940000153525.g.b.a.n	ENSGT00940000161734
Hybrid Bos Indicus	MODERN SPECIES		ENSBIXG00005016905	ENSBIXG00005016911	NAALADL2 (ENSBIXG00005002757)	TBL1XR1 (ENSBIXG00005002780) #13	ENSBIXG00005006866	ENSBIXG00005002798	KCNMB2 (ENSBIXG00005017216) #14	ZMAT3 (ENSBIXG00005017242) #15	ENSBIXG00005017249	PIK3CA (ENSBIXG00005017279) #16	KCNMB3 (ENSBIXG00005002817) #17	ZNF639 (ENSBIXG00005017422) #18	ENSBIXG00005017430	MFN1 (ENSBIXG00005007801) #19	GNB4 (ENSBIXG00005017563) #20	ACTL6A (ENSBIXG00005017648) #22	MRPL47 (ENSBIXG00005017737) #23	NDUFB5 (ENSBIXG00005017808) #24	ENSBIXG00005017824	USP13 (ENSBIXG00005017875) #25	PEX5L (ENSBIXG00005018250) #26	TTC14 (ENSBIXG00005018361) #27	CCDC39 (ENSBIXG00005018434) #28	ENSBIXG00005018457	FXR1 (ENSBIXG00005000056) #30	ENSBIXG00005003104 ##31	ATP11B (ENSBIXG00005003151) #33	DCUN1D1 (ENSBIXG00005019545) #34	MCCC1 (ENSBIXG00005019762) #35	ENSBIXG00005019865 #36	B3GNT5 (ENSBIXG00005019925) #37
Cow	MODERN SPECIES		TBL1XR1 (ENSBTAG00000021910) #13	ENSBTAG00000048417	ENSBTAG00000052803	GTPBP6 (ENSBTAG00000054315)	PLCXD1 (ENSBTAG00000035144)	ENSBTAG00000050181	KCNMB2 (ENSBTAG00000011377) #14	ZMAT3 (ENSBTAG00000012463) #15	ENSBTAG00000054655	PIK3CA (ENSBTAG00000009232) #16	KCNMB3 (ENSBTAG00000009235) #17	ZNF639 (ENSBTAG00000037393) #18	ENSBTAG00000050978	MFN1 (ENSBTAG00000010485) #19	GNB4 (ENSBTAG00000002767) #20	ACTL6A (ENSBTAG00000002460) #22	MRPL47 (ENSBTAG00000002462) #23	NDUFB5 (ENSBTAG00000002463) #24	USP13 (ENSBTAG00000005946) #25	PEX5L (ENSBTAG00000013219) #26	TTC14 (ENSBTAG00000001968) #27	CCDC39 (ENSBTAG00000001969) #28	FXR1 (ENSBTAG00000016457) #30	DNAJC19 (ENSBTAG00000023513) ##31	ATP11B (ENSBTAG00000000290) #33	DCUN1D1 (ENSBTAG00000012797) #34	MCCC1 (ENSBTAG00000006548) #35	LAMP3 (ENSBTAG00000006552) #36	B3GNT5 (ENSBTAG00000010397) #37	ENSBTAG00000032217	MCF2L2 (ENSBTAG00000010394)
American bison	MODERN SPECIES	3281									KCNMB2 (ENSBBBG00000016906) #14	ZMAT3 (ENSBBBG00000016883) #15	PIK3CA (ENSBBBG00000016857) #16	KCNMB3 (ENSBBBG00000016801) #17	ZNF639 (ENSBBBG00000016766) #18	MFN1 (ENSBBBG00000016746) #19	GNB4 (ENSBBBG00000000725) #20	ACTL6A (ENSBBBG00000004132) #22	MRPL47 (ENSBBBG00000016656) #23	NDUFB5 (ENSBBBG00000016629) #24	USP13 (ENSBBBG00000016615) #25	PEX5L (ENSBBBG00000016549) #26	TTC14 (ENSBBBG00000016091) #27	CCDC39 (ENSBBBG00000016047) #28	FXR1 (ENSBBBG00000016010) #30	ENSBBBG00000015808 ##31	SOX2 (ENSBBBG00000015767) #32	ATP11B (ENSBBBG00000015744) #33	DCUN1D1 (ENSBBBG00000002643) #34	MCCC1 (ENSBBBG00000015686) #35	LAMP3 (ENSBBBG00000003901)	MCF2L2 (ENSBBBG00000003450)	B3GNT5 (ENSBBBG00000007365) #37
Caprinae	ANCESTRAL SPECIES	8	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000161884.d	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00940000153421.a.b #13	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00950000183039.B.a #17	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00910000147128	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384.g ##31	ENSGT00940000160614 #32	ENSGT00940000173300	ENSGT00940000156162.C.k #33	ENSGT00940000154552 #34	ENSGT00940000156941 #35	ENSGT00950000182899.C.a #36
Rambouillet Sheep	MODERN SPECIES		ECT2 (ENSOARG00020000567)	SPATA16 (ENSOARG00020000484)	ENSOARG00020000457	NLGN1 (ENSOARG00020000438)	NAALADL2 (ENSOARG00020000356)	ENSOARG00020000331	TBL1XR1 (ENSOARG00020000203) #13	ENSOARG00020000133	KCNMB2 (ENSOARG00020000078) #14	ZMAT3 (ENSOARG00020000075) #15	PIK3CA (ENSOARG00020010030) #16	ENSOARG00020009952 #17	ZNF639 (ENSOARG00020009893) #18	MFN1 (ENSOARG00020009679) #19	GNB4 (ENSOARG00020009587) #20	ACTL6A (ENSOARG00020009394) #22	MRPL47 (ENSOARG00020009272) #23	NDUFB5 (ENSOARG00020009071) #24	USP13 (ENSOARG00020008860) #25	PEX5L (ENSOARG00020007531) #26	CCDC39 (ENSOARG00020006964) #28	TTC14 (ENSOARG00020006723) #27	FXR1 (ENSOARG00020005863) #30	DNAJC19 (ENSOARG00020005775) ##31	SOX2 (ENSOARG00020005758) #32	ENSOARG00020005742	ATP11B (ENSOARG00020005548) #33	DCUN1D1 (ENSOARG00020005500) #34	MCCC1 (ENSOARG00020005367) #35	ENSOARG00020005267 #36	B3GNT5 (ENSOARG00020005246) #37
Goat	MODERN SPECIES		NCEH1 (ENSCHIG00000024248)	ECT2 (ENSCHIG00000025581)	ENSCHIG00000013430	SPATA16 (ENSCHIG00000023395)	ENSCHIG00000009834	NLGN1 (ENSCHIG00000026919)	NAALADL2 (ENSCHIG00000018744)	TBL1XR1 (ENSCHIG00000010626) #13	KCNMB2 (ENSCHIG00000020065) #14	ZMAT3 (ENSCHIG00000025074) #15	PIK3CA (ENSCHIG00000016154) #16	KCNMB3 (ENSCHIG00000021624) #17	ZNF639 (ENSCHIG00000025519) #18	MFN1 (ENSCHIG00000021326) #19	GNB4 (ENSCHIG00000011036) #20	ACTL6A (ENSCHIG00000017016) #22	MRPL47 (ENSCHIG00000013922) #23	NDUFB5 (ENSCHIG00000024994) #24	USP13 (ENSCHIG00000020163) #25	ENSCHIG00000017176	PEX5L (ENSCHIG00000021885) #26	TTC14 (ENSCHIG00000013993) #27	CCDC39 (ENSCHIG00000025334) #28	ENSCHIG00000002251	ENSCHIG00000025304	FXR1 (ENSCHIG00000017202) #30	ENSCHIG00000022989 ##31	SOX2 (ENSCHIG00000011126) #32	ENSCHIG00000018528	ENSCHIG00000026896	ATP11B (ENSCHIG00000006700) #33
Camelidae	ANCESTRAL SPECIES		ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00940000153421.a.b #13	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00950000183039.B.a #17	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00910000147128	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384.g ##31	ENSGT00940000160614 #32	ENSGT00940000156162.C.k #33	ENSGT00940000154552 #34	ENSGT00940000156941 #35	ENSGT00950000182899.C.a #36	ENSGT00940000161734
Arabian camel	MODERN SPECIES		SPATA16 (ENSCDRG00005000021)	NLGN1 (ENSCDRG00005000025)	ENSCDRG00005000026	NAALADL2 (ENSCDRG00005000032)	ENSCDRG00005000048	TBL1XR1 (ENSCDRG00005000072) #13	KCNMB2 (ENSCDRG00005000101) #14	ENSCDRG00005000141	ZMAT3 (ENSCDRG00005000152) #15	PIK3CA (ENSCDRG00005000192) #16	ENSCDRG00005000278	ENSCDRG00005000287 #17	ZNF639 (ENSCDRG00005000309) #18	MFN1 (ENSCDRG00005000323) #19	GNB4 (ENSCDRG00005000360) #20	ACTL6A (ENSCDRG00005000384) #22	ENSCDRG00005000409	MRPL47 (ENSCDRG00005000428) #23	NDUFB5 (ENSCDRG00005000451) #24	USP13 (ENSCDRG00005000482) #25	ENSCDRG00005000524	PEX5L (ENSCDRG00005000654) #26	TTC14 (ENSCDRG00005001332) #27	CCDC39 (ENSCDRG00005001364) #28	FXR1 (ENSCDRG00005001445) #30	DNAJC19 (ENSCDRG00005001633) ##31	ENSCDRG00005001671	ENSCDRG00005001685	ATP11B (ENSCDRG00005001739) #33	DCUN1D1 (ENSCDRG00005001947) #34	MCCC1 (ENSCDRG00005001977) #35
Alpaca	MODERN SPECIES	2024										ZMAT3 (ENSVPAG00000006611) #15	PIK3CA (ENSVPAG00000006612) #16	KCNMB3 (ENSVPAG00000006613) #17	ZNF639 (ENSVPAG00000006614) #18	MFN1 (ENSVPAG00000006617) #19	GNB4 (ENSVPAG00000006622) #20	ACTL6A (ENSVPAG00000006628) #22	MRPL47 (ENSVPAG00000006633) #23	NDUFB5 (ENSVPAG00000006634) #24	USP13 (ENSVPAG00000006636) #25	PEX5L (ENSVPAG00000006638) #26
Laurasiatheria_b	ANCESTRAL SPECIES	2	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00860000135711	ENSGT00940000153421.a.b #13	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00950000183039.B.a #17	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00910000147128	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384.h.a ##31	ENSGT00940000160614 #32	ENSGT00940000156162.C.k #33	ENSGT00940000154552 #34	ENSGT00940000156941 #35	ENSGT00950000182899.C.a #36	ENSGT00940000161734
Carnivora	ANCESTRAL SPECIES	10	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00390000005534.b.b.d	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00940000153421.a.b #13	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00950000183039.B.a #17	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00910000147128	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384.h.a ##31	ENSGT00940000160614 #32	ENSGT00940000164959	ENSGT00940000156162.C.k #33	ENSGT00940000154552 #34	ENSGT00940000156941 #35	ENSGT00940000164015
Caniformia	ANCESTRAL SPECIES		ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00390000005534.b.b.d	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00940000153421.a.b #13	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00950000183039.B.a #17	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00960000193213	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384.h.a ##31	ENSGT00940000160614 #32	ENSGT00940000164959	ENSGT00940000156162.C.k #33	ENSGT00940000154552 #34	ENSGT00940000156941 #35	ENSGT00940000164015
Caniformia_b	ANCESTRAL SPECIES		ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00390000005534.b.b.d	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00940000153421.a.b #13	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00950000183039.B.a #17	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980.z #24	ENSGT00940000157401 #25	ENSGT00960000193213	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384.h.a ##31	ENSGT00940000160614 #32	ENSGT00940000164959	ENSGT00940000156162.C.k #33	ENSGT00940000154552 #34	ENSGT00940000156941 #35	ENSGT00940000164015
Ursidae	ANCESTRAL SPECIES	1	ENSGT00390000015332	ENSGT00390000005534.b.b.d	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00940000154268.e.a.jb.b	ENSGT00860000135711	ENSGT00940000153421.a.b #13	ENSGT00950000185097.a	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00950000183039.B.a #17	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980.z #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384.h.a ##31	ENSGT00940000160614 #32	ENSGT00940000156162.C.k #33	ENSGT00940000154552 #34	ENSGT00940000156941 #35	ENSGT00940000164015	ENSGT00940000159676 #37	ENSGT00990000203899
Ursus	ANCESTRAL SPECIES	22	ENSGT00390000015332	ENSGT00390000005534.b.b.d	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00940000154268.e.a.jb.b	ENSGT00860000135711	ENSGT00940000153421.a.b #13	ENSGT00950000185097.a	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00950000183039.B.a #17	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980.z #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384.h.a ##31	ENSGT00940000160614 #32	ENSGT00940000156162.C.k #33	ENSGT00940000154552 #34	ENSGT00940000156941 #35	ENSGT00940000164015	ENSGT00940000159676 #37	ENSGT00990000203899
American black bear	MODERN SPECIES	614													ZNF639 (ENSUAMG00000007616) #18	MFN1 (ENSUAMG00000007614) #19	GNB4 (ENSUAMG00000007570) #20	ACTL6A (ENSUAMG00000007566) #22	MRPL47 (ENSUAMG00000007563) #23
Polar bear	MODERN SPECIES	270	SPATA16 (ENSUMAG00000008006)	ENSUMAG00000007969	NLGN1 (ENSUMAG00000007957)	NAALADL2 (ENSUMAG00000007923)	ENSUMAG00000007910	ENSUMAG00000007898	TBL1XR1 (ENSUMAG00000007886) #13	ENSUMAG00000007876	KCNMB2 (ENSUMAG00000007875) #14	ZMAT3 (ENSUMAG00000007847) #15	PIK3CA (ENSUMAG00000007616) #16	KCNMB3 (ENSUMAG00000007593) #17	ZNF639 (ENSUMAG00000007588) #18	MFN1 (ENSUMAG00000007570) #19	GNB4 (ENSUMAG00000007558) #20	ACTL6A (ENSUMAG00000007556) #22	MRPL47 (ENSUMAG00000007554) #23	NDUFB5 (ENSUMAG00000007550) #24	USP13 (ENSUMAG00000007534) #25	PEX5L (ENSUMAG00000007206) #26	ENSUMAG00000007106 #27	ENSUMAG00000007101 #27	CCDC39 (ENSUMAG00000007079) #28	FXR1 (ENSUMAG00000007061) #30	ENSUMAG00000007051 ##31	SOX2 (ENSUMAG00000007022) #32	ATP11B (ENSUMAG00000006982) #33	DCUN1D1 (ENSUMAG00000006934) #34	MCCC1 (ENSUMAG00000006927) #35	LAMP3 (ENSUMAG00000006918)	B3GNT5 (ENSUMAG00000006915) #37
Giant Panda	MODERN SPECIES		ECT2 (ENSAMEG00000001035)	SPATA16 (ENSAMEG00000001100)	NLGN1 (ENSAMEG00000001461)	NAALADL2 (ENSAMEG00000010705)	ENSAMEG00000029929	ENSAMEG00000031369	TBL1XR1 (ENSAMEG00000010711) #13	ENSAMEG00000028254	KCNMB2 (ENSAMEG00000010737) #14	ZMAT3 (ENSAMEG00000010742) #15	PIK3CA (ENSAMEG00000010753) #16	KCNMB3 (ENSAMEG00000010807) #17	ZNF639 (ENSAMEG00000010809) #18	MFN1 (ENSAMEG00000010816) #19	GNB4 (ENSAMEG00000010842) #20	ACTL6A (ENSAMEG00000010856) #22	MRPL47 (ENSAMEG00000010876) #23	NDUFB5 (ENSAMEG00000023963) #24	USP13 (ENSAMEG00000010896) #25	PEX5L (ENSAMEG00000010981) #26	TTC14 (ENSAMEG00000011013) #27	CCDC39 (ENSAMEG00000011032) #28	FXR1 (ENSAMEG00000012185) #30	ENSAMEG00000029101	Sox2 (ENSAMEG00000011029) #32	ATP11B (ENSAMEG00000015884) #33	DCUN1D1 (ENSAMEG00000015937) #34	MCCC1 (ENSAMEG00000015967) #35	LAMP3 (ENSAMEG00000015997)	B3GNT5 (ENSAMEG00000019887) #37	KLHL6 (ENSAMEG00000017427)
Mustelinae	ANCESTRAL SPECIES	20	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00940000153421.a.b #13	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00950000183039.B.a #17	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980.z #24	ENSGT00940000157401 #25	ENSGT00960000193213	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384.h.a ##31	ENSGT00940000154502.`b.b.b	ENSGT00940000160614 #32	ENSGT00940000164959	ENSGT00940000156162.C.k #33	ENSGT00940000154552 #34	ENSGT00940000156941 #35
Ferret	MODERN SPECIES	216	SPATA16 (ENSMPUG00000017177)	ENSMPUG00000017179	ENSMPUG00000017180	ENSMPUG00000018916	ENSMPUG00000017193	NAALADL2 (ENSMPUG00000017199)	ENSMPUG00000017200	TBL1XR1 (ENSMPUG00000017202) #13	KCNMB2 (ENSMPUG00000017205) #14	ZMAT3 (ENSMPUG00000017206) #15	PIK3CA (ENSMPUG00000017207) #16	KCNMB3 (ENSMPUG00000017208) #17	ZNF639 (ENSMPUG00000017209) #18	MFN1 (ENSMPUG00000017210) #19	GNB4 (ENSMPUG00000017211) #20	ACTL6A (ENSMPUG00000017212) #22	MRPL47 (ENSMPUG00000017214) #23	NDUFB5 (ENSMPUG00000017216) #24	USP13 (ENSMPUG00000017217) #25	PEX5L (ENSMPUG00000017218) #26
American mink	MODERN SPECIES	118										ZMAT3 (ENSNVIG00000018146) #15	PIK3CA (ENSNVIG00000018130) #16	KCNMB3 (ENSNVIG00000018086) #17	ZNF639 (ENSNVIG00000018071) #18	MFN1 (ENSNVIG00000018002) #19	GNB4 (ENSNVIG00000017705) #20	ACTL6A (ENSNVIG00000017593) #22	MRPL47 (ENSNVIG00000017553) #23	NDUFB5 (ENSNVIG00000017522) #24	USP13 (ENSNVIG00000017445) #25	ENSNVIG00000017429	E9PH97 (ENSNVIG00000016959) #26	TTC14 (ENSNVIG00000016897) #27	CCDC39 (ENSNVIG00000016850) #28	FXR1 (ENSNVIG00000016628) #30	ENSNVIG00000016582 ##31	ENSNVIG00000016571	SOX2 (ENSNVIG00000016538) #32	ENSNVIG00000016527	ATP11B (ENSNVIG00000016435) #33	DCUN1D1 (ENSNVIG00000016385) #34	MCCA (ENSNVIG00000016260) #35
Canidae	ANCESTRAL SPECIES	43										ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00950000183039.B.a #17	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980.w #24	ENSGT00940000157401 #25	ENSGT00960000193213	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384.h.a ##31	ENSGT00940000160614 #32	ENSGT00940000164959	ENSGT00940000156162.C.k #33	ENSGT00940000154552 #34	ENSGT00940000156941 #35	ENSGT00950000182899.C.a #36
Canis_lupus	ANCESTRAL SPECIES	41										ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00950000183039.B.a #17	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980.w #24	ENSGT00940000157401 #25	ENSGT00960000193213	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384.h.a ##31	ENSGT00940000160614 #32	ENSGT00940000156162.C.k #33	ENSGT00940000154552 #34	ENSGT00940000156941 #35	ENSGT00950000182899.C.a #36	ENSGT00940000161734
Dingo	MODERN SPECIES	159	CCDC127 (ENSCAFG00020023080)	ENSCAFG00020023082	LRRC14B (ENSCAFG00020023084)	PLEKHG4B (ENSCAFG00020023087)	ENSCAFG00020023098	ENSCAFG00020023100	ENSCAFG00020023101	ENSCAFG00020023104	ENSCAFG00020023106	ZMAT3 (ENSCAFG00020023107) #15	PIK3CA (ENSCAFG00020023109) #16	KCNMB3 (ENSCAFG00020023112) #17	ZNF639 (ENSCAFG00020023113) #18	MFN1 (ENSCAFG00020023114) #19	GNB4 (ENSCAFG00020023115) #20	ACTL6A (ENSCAFG00020023126) #22	MRPL47 (ENSCAFG00020023127) #23	ENSCAFG00020023129 #24	ENSCAFG00020023130	ENSCAFG00020023131	USP13 (ENSCAFG00020023133) #25	ENSCAFG00020023137	PEX5L (ENSCAFG00020023148) #26	TTC14 (ENSCAFG00020023505) #27	CCDC39 (ENSCAFG00020023514) #28	FXR1 (ENSCAFG00020023527) #30	ENSCAFG00020023532 ##31	SOX2 (ENSCAFG00020023541) #32	ENSCAFG00020023545	ATP11B (ENSCAFG00020000213) #33	DCUN1D1 (ENSCAFG00020000986) #34
Dog	MODERN SPECIES	27	AHRR (ENSCAFG00845014897)	PDCD6 (ENSCAFG00845014967)	SDHA (ENSCAFG00845015100)	CCDC127 (ENSCAFG00845015192)	ENSCAFG00845015223	LRRC14B (ENSCAFG00845015253)	ENSCAFG00845015302	ENSCAFG00845015451	ENSCAFG00845015500	ENSCAFG00845015527 #15	PIK3CA (ENSCAFG00845015587) #16	KCNMB3 (ENSCAFG00845015706) #17	ZNF639 (ENSCAFG00845015781) #18	MFN1 (ENSCAFG00845015841) #19	GNB4 (ENSCAFG00845016005) #20	ACTL6A (ENSCAFG00845016262) #22	MRPL47 (ENSCAFG00845016380) #23	NDUFB5 (ENSCAFG00845016589) #24	USP13 (ENSCAFG00845016860) #25	PEX5L (ENSCAFG00845017545) #26	TTC14 (ENSCAFG00845018663) #27	CCDC39 (ENSCAFG00845018860) #28	FXR1 (ENSCAFG00845019374) #30	DNAJC19 (ENSCAFG00845020070) ##31	ATP11B (ENSCAFG00845020449) #33	DCUN1D1 (ENSCAFG00845021251) #34	MCCC1 (ENSCAFG00845021386) #35	ENSCAFG00845021628 #36	MCF2L2 (ENSCAFG00845021833)	KLHL6 (ENSCAFG00845022563)	ENSCAFG00845022671
Red fox	MODERN SPECIES	63										ZMAT3 (ENSVVUG00000004729) #15	PIK3CA (ENSVVUG00000004738) #16	KCNMB3 (ENSVVUG00000004756) #17	ZNF639 (ENSVVUG00000004762) #18	MFN1 (ENSVVUG00000004780) #19	GNB4 (ENSVVUG00000004802) #20	ACTL6A (ENSVVUG00000004812) #22	MRPL47 (ENSVVUG00000004837) #23	NDUFB5 (ENSVVUG00000004849) #24	USP13 (ENSVVUG00000004881) #25	PEX5L (ENSVVUG00000004951) #26	TTC14 (ENSVVUG00000006305) #27	CCDC39 (ENSVVUG00000006637) #28	ENSVVUG00000006654	FXR1 (ENSVVUG00000006660) #30	DNAJC19 (ENSVVUG00000006684) ##31	ENSVVUG00000006699	ENSVVUG00000006706	SOX2 (ENSVVUG00000006730) #32	ENSVVUG00000006736	ATP11B (ENSVVUG00000006763) #33	DCUN1D1 (ENSVVUG00000006826) #34
Felidae	ANCESTRAL SPECIES	9	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00390000005534.b.b.d	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00940000153421.a.b #13	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00950000183039.B.a #17	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00910000147128	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00940000172992	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384.h.a ##31	ENSGT00940000160614 #32	ENSGT00940000164959	ENSGT00940000156162.C.k #33	ENSGT00940000154552 #34	ENSGT00940000156941 #35
Panthera	ANCESTRAL SPECIES	12	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00390000005534.b.b.d	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00860000135711	ENSGT00940000153421.a.b #13	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00950000183039.B.a #17	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00910000147128	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00940000172992	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384.h.a ##31	ENSGT00940000160614 #32	ENSGT00940000164959	ENSGT00940000156162.C.k #33	ENSGT00940000154552 #34	ENSGT00940000156941 #35
Panthera_a	ANCESTRAL SPECIES	17	ENSGT00940000156299	ENSGT00390000015332	ENSGT00390000005534.b.b.d	ENSGT00940000155789	ENSGT00940000158200	ENSGT01030000234598.a.b	ENSGT00860000135711	ENSGT00940000153421.a.b #13	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00950000183039.B.a #17	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00950000182802.B.a.a.a.b.a.b #29	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00910000147128	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00940000172992	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384.h.a ##31	ENSGT00940000160614 #32	ENSGT00940000164959	ENSGT00940000156162.C.k #33	ENSGT00940000154552 #34
leopard	MODERN SPECIES	41	NLGN1 (ENSPPRG00000009803)	ENSPPRG00000009449	NAALADL2 (ENSPPRG00000008765)	ENSPPRG00000008440	ENSPPRG00000008283	ENSPPRG00000014311	TBL1XR1 (ENSPPRG00000007211) #13	KCNMB2 (ENSPPRG00000005379) #14	ZMAT3 (ENSPPRG00000004407) #15	PIK3CA (ENSPPRG00000003667) #16	KCNMB3 (ENSPPRG00000003525) #17	ZNF639 (ENSPPRG00000002569) #18	MFN1 (ENSPPRG00000001517) #19	GNB4 (ENSPPRG00000001295) #20	ENSPPRG00000022425	ACTL6A (ENSPPRG00000000310) #22	MRPL47 (ENSPPRG00000000050) #23	ENSPPRG00000022339 #29	NDUFB5 (ENSPPRG00000023717) #24	USP13 (ENSPPRG00000023982) #25	ENSPPRG00000022239	PEX5L (ENSPPRG00000012577) #26	ENSPPRG00000006521	TTC14 (ENSPPRG00000006127) #27	CCDC39 (ENSPPRG00000005599) #28	ENSPPRG00000005376	FXR1 (ENSPPRG00000004943) #30	DNAJC19 (ENSPPRG00000002612) ##31	SOX2 (ENSPPRG00000021752) #32	ENSPPRG00000002170	ENSPPRG00000001643
lion	MODERN SPECIES	9	ECT2 (ENSPLOG00000013475)	SPATA16 (ENSPLOG00000013657)	NLGN1 (ENSPLOG00000013747)	ENSPLOG00000013820	NAALADL2 (ENSPLOG00000013868)	ENSPLOG00000014025	TBL1XR1 (ENSPLOG00000014076) #13	ENSPLOG00000014169	KCNMB2 (ENSPLOG00000014199) #14	ZMAT3 (ENSPLOG00000014350) #15	PIK3CA (ENSPLOG00000014416) #16	KCNMB3 (ENSPLOG00000014563) #17	ZNF639 (ENSPLOG00000014743) #18	MFN1 (ENSPLOG00000014785) #19	GNB4 (ENSPLOG00000014871) #20	ACTL6A (ENSPLOG00000014922) #22	MRPL47 (ENSPLOG00000015006) #23	ENSPLOG00000015221 #29	NDUFB5 (ENSPLOG00000015246) #24	USP13 (ENSPLOG00000015359) #25	PEX5L (ENSPLOG00000015604) #26	TTC14 (ENSPLOG00000016608) #27	CCDC39 (ENSPLOG00000016889) #28	ENSPLOG00000017262 #30	DNAJC19 (ENSPLOG00000017942) ##31	SOX2 (ENSPLOG00000018057) #32	ENSPLOG00000018071	ATP11B (ENSPLOG00000018137) #33	DCUN1D1 (ENSPLOG00000018397) #34	MCCC1 (ENSPLOG00000018464) #35	LAMP3 (ENSPLOG00000018830)
Tiger	MODERN SPECIES	474								KCNMB2 (ENSPTIG00000009985) #14	ZMAT3 (ENSPTIG00000009929) #15	PIK3CA (ENSPTIG00000009726) #16	KCNMB3 (ENSPTIG00000009324) #17	ZNF639 (ENSPTIG00000009164) #18	MFN1 (ENSPTIG00000008839) #19	GNB4 (ENSPTIG00000008698) #20	ENSPTIG00000008626	ACTL6A (ENSPTIG00000008261) #22	MRPL47 (ENSPTIG00000007879) #23	NDUFB5 (ENSPTIG00000007631) #24	USP13 (ENSPTIG00000007161) #25	ENSPTIG00000009433	PEX5L (ENSPTIG00000004084) #26	TTC14 (ENSPTIG00000001841) #27	CCDC39 (ENSPTIG00000001676) #28	FXR1 (ENSPTIG00000019748) #30	DNAJC19 (ENSPTIG00000019574) ##31	ENSPTIG00000019532	ATP11B (ENSPTIG00000018956) #33	DCUN1D1 (ENSPTIG00000018800) #34	MCCC1 (ENSPTIG00000018514) #35	LAMP3 (ENSPTIG00000018429)	B3GNT5 (ENSPTIG00000009347) #37
Cat	MODERN SPECIES	240	NCEH1 (ENSFCAG00000028457)	ECT2 (ENSFCAG00000018600)	SPATA16 (ENSFCAG00000010284)	NLGN1 (ENSFCAG00000008779)	ENSFCAG00000038414	NAALADL2 (ENSFCAG00000041177)	TBL1XR1 (ENSFCAG00000002457) #13	ENSFCAG00000041738	KCNMB2 (ENSFCAG00000006044) #14	ZMAT3 (ENSFCAG00000014578) #15	PIK3CA (ENSFCAG00000018737) #16	KCNMB3 (ENSFCAG00000041547) #17	ZNF639 (ENSFCAG00000012004) #18	MFN1 (ENSFCAG00000028181) #19	GNB4 (ENSFCAG00000039564) #20	ACTL6A (ENSFCAG00000012364) #22	MRPL47 (ENSFCAG00000039093) #23	NDUFB5 (ENSFCAG00000012365) #24	USP13 (ENSFCAG00000025086) #25	PEX5L (ENSFCAG00000012367) #26	TTC14 (ENSFCAG00000027763) #27	CCDC39 (ENSFCAG00000029319) #28	ENSFCAG00000035458	FXR1 (ENSFCAG00000022259) #30	ENSFCAG00000010591 #31	ENSFCAG00000043744	ENSFCAG00000039424	ATP11B (ENSFCAG00000026272) #33	DCUN1D1 (ENSFCAG00000032259) #34	MCCC1 (ENSFCAG00000000940) #35	LAMP3 (ENSFCAG00000028212)
Laurasiatheria_c	ANCESTRAL SPECIES	2	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00860000135711	ENSGT00940000153421.a.b #13	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00950000183039.B.a #17	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00910000147128	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384.h.a ##31	ENSGT00940000160614 #32	ENSGT00940000156162.C.k #33	ENSGT00940000154552 #34	ENSGT00940000156941 #35	ENSGT00950000182899.C.a #36	ENSGT00940000161734
Equus	ANCESTRAL SPECIES	19	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00990000205077	ENSGT00860000135711	ENSGT00940000153421.a.b #13	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00950000183039.B.a #17	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384.h.a ##31	ENSGT00940000160614 #32	ENSGT00940000156162.C.k #33	ENSGT00940000154552 #34	ENSGT00940000156941 #35	ENSGT00950000182899.C.a #36	ENSGT00940000161734	ENSGT00940000159676 #37
Horse	MODERN SPECIES	10	NAALADL2 (ENSECAG00000016282)	ENSECAG00000045243	ENSECAG00000052492	ENSECAG00000053463	ENSECAG00000049777	ENSECAG00000048291	ENSECAG00000049616	TBL1XR1 (ENSECAG00000008249) #13	KCNMB2 (ENSECAG00000009088) #14	ZMAT3 (ENSECAG00000012784) #15	PIK3CA (ENSECAG00000015019) #16	KCNMB3 (ENSECAG00000014580) #17	ZNF639 (ENSECAG00000015691) #18	MFN1 (ENSECAG00000018551) #19	GNB4 (ENSECAG00000008196) #20	ACTL6A (ENSECAG00000013622) #22	MRPL47 (ENSECAG00000018545) #23	NDUFB5 (ENSECAG00000000682) #24	USP13 (ENSECAG00000004152) #25	PEX5L (ENSECAG00000006506) #26	ENSECAG00000057496	TTC14 (ENSECAG00000014616) #27	CCDC39 (ENSECAG00000021390) #28	FXR1 (ENSECAG00000007560) #30	ENSECAG00000034995	DNAJC19 (ENSECAG00000009331) ##31	ENSECAG00000051089	SOX2 (ENSECAG00000010653) #32	ATP11B (ENSECAG00000016912) #33	ENSECAG00000045511	DCUN1D1 (ENSECAG00000021365) #34
Donkey	MODERN SPECIES	25	NCEH1 (ENSEASG00005017188)	ECT2 (ENSEASG00005016949)	SPATA16 (ENSEASG00005016917)	NLGN1 (ENSEASG00005033409)	NAALADL2 (ENSEASG00005016907)	ENSEASG00005016908	ENSEASG00005036049	TBL1XR1 (ENSEASG00005016897) #13	KCNMB2 (ENSEASG00005016891) #14	ZMAT3 (ENSEASG00005016887) #15	PIK3CA (ENSEASG00005016884) #16	ENSEASG00005016880 #17	ZNF639 (ENSEASG00005016879) #18	MFN1 (ENSEASG00005016871) #19	GNB4 (ENSEASG00005016867) #20	ACTL6A (ENSEASG00005016862) #22	MRPL47 (ENSEASG00005016858) #23	NDUFB5 (ENSEASG00005016854) #24	USP13 (ENSEASG00005016850) #25	PEX5L (ENSEASG00005016845) #26	TTC14 (ENSEASG00005016838) #27	CCDC39 (ENSEASG00005016830) #28	FXR1 (ENSEASG00005016818) #30	DNAJC19 (ENSEASG00005016812) ##31	SOX2 (ENSEASG00005038258) #32	ATP11B (ENSEASG00005016115) #33	DCUN1D1 (ENSEASG00005016038) #34	MCCC1 (ENSEASG00005015339) #35	ENSEASG00005015308 #36	MCF2L2 (ENSEASG00005015300)	B3GNT5 (ENSEASG00005038666) #37
Chiroptera	ANCESTRAL SPECIES	13	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00860000135711	ENSGT00940000153421.a.b #13	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00950000183039.B.a #17	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00910000147128	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384.h.a ##31	ENSGT00940000160614 #32	ENSGT00940000156162.C.k #33	ENSGT00940000154552 #34	ENSGT00940000156941.h #35	ENSGT00950000182899.C.a #36	ENSGT00940000159676 #37
Megabat	MODERN SPECIES	741																ACTL6A (ENSPVAG00000004278) #22	MRPL47 (ENSPVAG00000004284) #23	NDUFB5 (ENSPVAG00000004286) #24	USP13 (ENSPVAG00000004289) #25	PEX5L (ENSPVAG00000004290) #26
Microchiroptera	ANCESTRAL SPECIES	11	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00860000135711	ENSGT00940000153421.a.b #13	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00950000183039.B.a #17	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00910000147128	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384.h.a ##31	ENSGT00940000160614 #32	ENSGT00940000156162.C.k #33	ENSGT00940000154552 #34	ENSGT00940000156941.h #35	ENSGT00950000182899.C.a #36	ENSGT00940000159676 #37
Microbat	MODERN SPECIES	951									KCNMB2 (ENSMLUG00000006514) #14	ZMAT3 (ENSMLUG00000013074) #15	PIK3CA (ENSMLUG00000009229) #16	KCNMB3 (ENSMLUG00000009263) #17	ZNF639 (ENSMLUG00000007597) #18	MFN1 (ENSMLUG00000007603) #19	GNB4 (ENSMLUG00000007640) #20	ACTL6A (ENSMLUG00000024899) #22	MRPL47 (ENSMLUG00000000996) #23	NDUFB5 (ENSMLUG00000000999) #24	USP13 (ENSMLUG00000013714) #25	PEX5L (ENSMLUG00000011630) #26	ENSMLUG00000028182	TTC14 (ENSMLUG00000010448) #27	CCDC39 (ENSMLUG00000010487) #28	FXR1 (ENSMLUG00000006840) #30	ENSMLUG00000006865 ##31	SOX2 (ENSMLUG00000013015) #32	ENSMLUG00000006369	ATP11B (ENSMLUG00000000492) #33	DCUN1D1 (ENSMLUG00000012251) #34	MCCC1 (ENSMLUG00000012257) #35	LAMP3 (ENSMLUG00000012272)
Greater horseshoe bat	MODERN SPECIES	11	SPATA16 (ENSRFEG00010000235)	ENSRFEG00010000208	NLGN1 (ENSRFEG00010000199)	ENSRFEG00010000186	NAALADL2 (ENSRFEG00010000176)	ENSRFEG00010000156	TBL1XR1 (ENSRFEG00010000145) #13	KCNMB2 (ENSRFEG00010000136) #14	ZMAT3 (ENSRFEG00010000131) #15	ENSRFEG00010000122	PIK3CA (ENSRFEG00010021761) #16	ENSRFEG00010021748 #17	ZNF639 (ENSRFEG00010021744) #18	MFN1 (ENSRFEG00010021730) #19	GNB4 (ENSRFEG00010021722) #20	ACTL6A (ENSRFEG00010021704) #22	MRPL47 (ENSRFEG00010021687) #23	ENSRFEG00010021670 #24	USP13 (ENSRFEG00010021639) #25	ENSRFEG00010021630	PEX5L (ENSRFEG00010021467) #26	TTC14 (ENSRFEG00010021404) #27	CCDC39 (ENSRFEG00010021385) #28	FXR1 (ENSRFEG00010021302) #30	DNAJC19 (ENSRFEG00010021277) ##31	ENSRFEG00010021268	ENSRFEG00010021250	ENSRFEG00010021233	ATP11B (ENSRFEG00010021177) #33	DCUN1D1 (ENSRFEG00010021156) #34	ENSRFEG00010021147
Eulipotyphla	ANCESTRAL SPECIES	466																ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24
Hedgehog	MODERN SPECIES	3370																ACTL6A (ENSEEUG00000012092) #22	MRPL47 (ENSEEUG00000012255) #23
Common shrew	MODERN SPECIES	2522																ACTL6A (ENSSARG00000013987) #22
Atlantogenata	ANCESTRAL SPECIES	19	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00940000153421.a.b #13	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00950000183039.B.a #17	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384.h.a ##31	ENSGT00940000154384.h.b #31	ENSGT00940000160614 #32	ENSGT00940000156162.C.k #33	ENSGT00940000154552 #34	ENSGT00940000156941 #35	ENSGT00950000182899.C.a #36	ENSGT00940000164015
Xenarthra	ANCESTRAL SPECIES	380									ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00950000183039.B.a #17	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26
Armadillo	MODERN SPECIES	3929			ENSDNOG00000042108	ORC5 (ENSDNOG00000035576)	ENSDNOG00000002481	PSMC2 (ENSDNOG00000002708)	DNAJC2 (ENSDNOG00000002705)	PMPCB (ENSDNOG00000002703)	NAPEPLD (ENSDNOG00000019995)	ENSDNOG00000008119	ENSDNOG00000014019 #16	KCNMB3 (ENSDNOG00000042171) #17	ZNF639 (ENSDNOG00000046090) #18	MFN1 (ENSDNOG00000000527) #19	ENSDNOG00000045453 #20	ACTL6A (ENSDNOG00000011367) #22	MRPL47 (ENSDNOG00000015052) #23	NDUFB5 (ENSDNOG00000046543) #24	USP13 (ENSDNOG00000004938) #25	PEX5L (ENSDNOG00000004945) #26	ENSDNOG00000045799	ENSDNOG00000043689	ENSDNOG00000013231
Sloth	MODERN SPECIES	2928																ACTL6A (ENSCHOG00000009477) #22
Afrotheria	ANCESTRAL SPECIES	17																ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384.h.a ##31	ENSGT00940000154384.h.b #31	ENSGT00940000160614 #32	ENSGT00940000156162.C.k #33	ENSGT00940000154552 #34	ENSGT00940000156941 #35	ENSGT00950000182899.C.a #36	ENSGT00940000164015
Tenrec	MODERN SPECIES	3247																ACTL6A (ENSETEG00000019357) #22	MRPL47 (ENSETEG00000019362) #23	NDUFB5 (ENSETEG00000019363) #24
Afrotheria_a	ANCESTRAL SPECIES	16																ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384.h.a ##31	ENSGT00940000154384.h.b #31	ENSGT00940000160614 #32	ENSGT00940000156162.C.k #33	ENSGT00940000154552 #34	ENSGT00940000156941 #35	ENSGT00950000182899.C.a #36	ENSGT00940000164015
Hyrax	MODERN SPECIES	2650																ACTL6A (ENSPCAG00000016438) #22	MRPL47 (ENSPCAG00000016517) #23	NDUFB5 (ENSPCAG00000016547) #24
Elephant	MODERN SPECIES	261															MFN1 (ENSLAFG00000008856) #19	ACTL6A (ENSLAFG00000013530) #22	MRPL47 (ENSLAFG00000018470) #23	NDUFB5 (ENSLAFG00000022619) #24	USP13 (ENSLAFG00000015504) #25	PEX5L (ENSLAFG00000015513) #26	TTC14 (ENSLAFG00000013418) #27	CCDC39 (ENSLAFG00000013426) #28	FXR1 (ENSLAFG00000001908) #30	ENSLAFG00000001910 #31	SOX2 (ENSLAFG00000006096) #32	ATP11B (ENSLAFG00000010151) #33	DCUN1D1 (ENSLAFG00000016514) #34	MCCC1 (ENSLAFG00000018018) #35	LAMP3 (ENSLAFG00000022746)	B3GNT5 (ENSLAFG00000000374) #37	ENSLAFG00000000369
Marsupialia	ANCESTRAL SPECIES	8	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00950000182965.a.b.b.a.a.a.a.a.a	ENSGT00940000153421.a.b #13	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00950000183039.B.a #17	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384.h.b #31	ENSGT00940000160614 #32	ENSGT00940000156162.C.k #33	ENSGT00940000154552 #34	ENSGT00940000156941 #35	ENSGT00950000182899.C.a #36	ENSGT00940000161734	ENSGT00940000159676 #37
Opossum	MODERN SPECIES	6	SPATA16 (ENSMODG00000021318)	NLGN1 (ENSMODG00000021315)	NAALADL2 (ENSMODG00000021314)	ENSMODG00000024795	ENSMODG00000051427	ENSMODG00000021313	ENSMODG00000027370	TBL1XR1 (ENSMODG00000021312) #13	KCNMB2 (ENSMODG00000021309) #14	ZMAT3 (ENSMODG00000021308) #15	PIK3CA (ENSMODG00000021305) #16	KCNMB3 (ENSMODG00000021307) #17	ZNF639 (ENSMODG00000021306) #18	MFN1 (ENSMODG00000021304) #19	GNB4 (ENSMODG00000021303) #20	ACTL6A (ENSMODG00000021302) #22	ENSMODG00000041416 #23	NDUFB5 (ENSMODG00000021300) #24	USP13 (ENSMODG00000021299) #25	ENSMODG00000029313	PEX5L (ENSMODG00000021298) #26	TTC14 (ENSMODG00000021296) #27	CCDC39 (ENSMODG00000021295) #28	FXR1 (ENSMODG00000021294) #30	ENSMODG00000021293 #31	ENSMODG00000049678	ENSMODG00000028312	ENSMODG00000041249 #33	ENSMODG00000045209 #33	ENSMODG00000021291 #33	DCUN1D1 (ENSMODG00000039145) #34
Marsupialia_b	ANCESTRAL SPECIES	7	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00950000182965.a.b.b.a.a.a.a.a.a	ENSGT00940000153421.a.b #13	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00950000183039.B.a #17	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980.j #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384.h.b #31	ENSGT00940000160614 #32	ENSGT00940000156162.C.k #33	ENSGT00940000154552 #34	ENSGT00940000156941 #35	ENSGT00950000182899.C.a #36	ENSGT00940000161734	ENSGT00940000159676 #37
Diprotodontia	ANCESTRAL SPECIES	17	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00950000182965.a.b.b.a.a.a.a.a.a	ENSGT00950000182965.a.b.b.a.a.a.a.a.b	ENSGT00940000153421.a.b #13	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00950000183039.B.a #17	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980.j #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384.h.b #31	ENSGT00940000160614 #32	ENSGT00940000161383.f	ENSGT00390000003897.s.b.d.a	ENSGT00530000063687.b.b.b.h	ENSGT00940000156162.C.k #33	ENSGT00940000154552 #34	ENSGT00940000156941 #35
Diprotodontia_a	ANCESTRAL SPECIES	19	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00950000182965.a.b.b.a.a.a.a.a.a	ENSGT00950000182965.a.b.b.a.a.a.a.a.b	ENSGT00940000153421.a.b #13	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00950000183039.B.a #17	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980.j #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384.h.b #31	ENSGT00940000160614 #32	ENSGT00940000161383.f	ENSGT00390000003897.s.b.d.a	ENSGT00530000063687.b.b.b.h	ENSGT00940000156162.C.k #33	ENSGT00940000154552 #34	ENSGT00940000156941 #35
koala	MODERN SPECIES	9	SPATA16 (ENSPCIG00000010299)	ENSPCIG00000035061	NLGN1 (ENSPCIG00000023665)	NAALADL2 (ENSPCIG00000036959)	ENSPCIG00000010041	ENSPCIG00000030517	TBL1XR1 (ENSPCIG00000028583) #13	KCNMB2 (ENSPCIG00000006759) #14	ZMAT3 (ENSPCIG00000034195) #15	ENSPCIG00000006763	PIK3CA (ENSPCIG00000006767) #16	KCNMB3 (ENSPCIG00000010392) #17	ZNF639 (ENSPCIG00000010395) #18	MFN1 (ENSPCIG00000006771) #19	GNB4 (ENSPCIG00000006774) #20	ACTL6A (ENSPCIG00000006777) #22	ENSPCIG00000006780 #23	ENSPCIG00000032372 #24	USP13 (ENSPCIG00000023996) #25	PEX5L (ENSPCIG00000024006) #26	TTC14 (ENSPCIG00000019438) #27	CCDC39 (ENSPCIG00000034234) #28	ENSPCIG00000019447	FXR1 (ENSPCIG00000026314) #30	ENSPCIG00000026316 #31	ATP11B (ENSPCIG00000013021) #33	DCUN1D1 (ENSPCIG00000013025) #34	MCCC1 (ENSPCIG00000013027) #35	ENSPCIG00000013028	ENSPCIG00000013031	B3GNT5 (ENSPCIG00000013050) #37
Common wonbat	MODERN SPECIES	1046	GHSR (ENSVURG00010012811)	TNFSF10 (ENSVURG00010012804)	ENSVURG00010012795	ECT2 (ENSVURG00010012760)	SPATA16 (ENSVURG00010012732)	NLGN1 (ENSVURG00010012715)	NAALADL2 (ENSVURG00010012681)	ENSVURG00010012660	TBL1XR1 (ENSVURG00010012629) #13	KCNMB2 (ENSVURG00010012605) #14	PIK3CA (ENSVURG00010012578) #16	KCNMB3 (ENSVURG00010012570) #17	ZNF639 (ENSVURG00010012565) #18	MFN1 (ENSVURG00010012549) #19	GNB4 (ENSVURG00010012529) #20	ACTL6A (ENSVURG00010012511) #22	MRPL47 (ENSVURG00010012499) #23	NDUFB5 (ENSVURG00010012488) #24	USP13 (ENSVURG00010012461) #25	PEX5L (ENSVURG00010012070) #26	ENSVURG00010012046 #27	ENSVURG00010012039 #27	CCDC39 (ENSVURG00010012026) #28	FXR1 (ENSVURG00010011990) #30	ENSVURG00010011974 #31	SOX2 (ENSVURG00010011967) #32	ENSVURG00010011959	ATP11B (ENSVURG00010011883) #33	DCUN1D1 (ENSVURG00010011851) #34	MCCC1 (ENSVURG00010011829) #35	ENSVURG00010011796
Wallaby	MODERN SPECIES	4285																ACTL6A (ENSMEUG00000012631) #22	ENSMEUG00000012649 #23
Tasmanian devil	MODERN SPECIES	2	ENSSHAG00000031725	NCEH1 (ENSSHAG00000025000)	ECT2 (ENSSHAG00000010171)	SPATA16 (ENSSHAG00000010931)	NLGN1 (ENSSHAG00000016978)	NAALADL2 (ENSSHAG00000018074)	ENSSHAG00000022530	TBL1XR1 (ENSSHAG00000005700) #13	KCNMB2 (ENSSHAG00000027317) #14	ZMAT3 (ENSSHAG00000016154) #15	PIK3CA (ENSSHAG00000016406) #16	KCNMB3 (ENSSHAG00000016520) #17	ZNF639 (ENSSHAG00000016769) #18	MFN1 (ENSSHAG00000016834) #19	GNB4 (ENSSHAG00000016950) #20	ACTL6A (ENSSHAG00000017237) #22	MRPL47 (ENSSHAG00000017273) #23	NDUFB5 (ENSSHAG00000021190) #24	USP13 (ENSSHAG00000017431) #25	PEX5L (ENSSHAG00000017604) #26	TTC14 (ENSSHAG00000018408) #27	CCDC39 (ENSSHAG00000018433) #28	FXR1 (ENSSHAG00000018625) #30	ENSSHAG00000018671 #31	SOX2 (ENSSHAG00000020580) #32	ATP11B (ENSSHAG00000015543) #33	DCUN1D1 (ENSSHAG00000015925) #34	MCCC1 (ENSSHAG00000016104) #35	ENSSHAG00000016243 #36	ENSSHAG00000016433	ENSSHAG00000031434 #37
Platypus	MODERN SPECIES		NCEH1 (ENSOANG00000039720)	ECT2 (ENSOANG00000013671)	SPATA16 (ENSOANG00000022205)	NLGN1 (ENSOANG00000050589)	NAALADL2 (ENSOANG00000049145)	ENSOANG00000049897	TBL1XR1 (ENSOANG00000009492) #13	ENSOANG00000001673	KCNMB2 (ENSOANG00000040015) #14	ZMAT3 (ENSOANG00000009901) #15	PIK3CA (ENSOANG00000013922) #16	KCNMB3 (ENSOANG00000013923) #17	ZNF639 (ENSOANG00000012679) #18	MFN1 (ENSOANG00000004694) #19	GNB4 (ENSOANG00000004695) #20	ACTL6A (ENSOANG00000044256) #22	MRPL47 (ENSOANG00000002137) #23	ENSOANG00000021730 #24	USP13 (ENSOANG00000050467) #25	PEX5L (ENSOANG00000041655) #26	TTC14 (ENSOANG00000003676) #27	CCDC39 (ENSOANG00000020027) #28	FXR1 (ENSOANG00000011045) #30	DNAJC19 (ENSOANG00000011044) #31	ENSOANG00000011256 ##33	ENSOANG00000045472 ##33	DCUN1D1 (ENSOANG00000011254) #34	MCCC1 (ENSOANG00000011253) #35	ENSOANG00000011252 #36	ENSOANG00000050093	B3GNT5 (ENSOANG00000009184) #37
Sauria	ANCESTRAL SPECIES	9	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00940000153421.a.b #13	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT01030000235369	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00960000190572	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384 #31	ENSGT00940000160614 #32	ENSGT00940000156162.C #33	ENSGT00940000154552 #34	ENSGT00940000156941 #35	ENSGT00950000182899.C.a #36	ENSGT00940000161734
Lepidosauria	ANCESTRAL SPECIES	12	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00940000153421.a.b #13	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT01030000235369	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00960000190572	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384 #31	ENSGT00940000160614 #32	ENSGT00940000156162.C #33	ENSGT00940000154552 #34	ENSGT00940000156941 #35	ENSGT00950000182899.C.a #36	ENSGT00940000164015
Episquamata	ANCESTRAL SPECIES	2	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00940000153421.a.b #13	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT01030000235369	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00390000011515	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00960000190572	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384 #31	ENSGT00940000160614 #32	ENSGT00940000156162.C #33	ENSGT00940000154552 #34	ENSGT00940000156941 #35	ENSGT00950000182899.C.a #36	ENSGT00940000164015
Laterata	ANCESTRAL SPECIES		ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00940000153421.a.b #13	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT01030000235369	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00390000011515	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00960000190572	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384 #31	ENSGT00940000156162.C #33	ENSGT00940000154552 #34	ENSGT00940000156941 #35	ENSGT00940000164015	ENSGT00940000159676 #37	ENSGT00940000161734
Common wall lizard	MODERN SPECIES	13	ENSPMRG00000003026	TBL1XR1 (ENSPMRG00000003048) #13	ENSPMRG00000003094	ENSPMRG00000003104	KCNMB2 (ENSPMRG00000003126) #14	ENSPMRG00000003152 #15	ENSPMRG00000003165	ENSPMRG00000003168 #15	PIK3CA (ENSPMRG00000003186) #16	ENSPMRG00000003204	ZNF639 (ENSPMRG00000003214) #18	MFN1 (ENSPMRG00000003386) #19	GNB4 (ENSPMRG00000003918) #20	ENSPMRG00000003923	NIFK (ENSPMRG00000003928)	ACTL6A (ENSPMRG00000003934) #22	ENSPMRG00000003959 #23	ENSPMRG00000003984 #23	NDUFB5 (ENSPMRG00000003995) #24	ENSPMRG00000004003	USP13 (ENSPMRG00000004010) #25	PEX5L (ENSPMRG00000004041) #26	ENSPMRG00000004145	CCDC39 (ENSPMRG00000004156) #28	FXR1 (ENSPMRG00000004189) #30	ENSPMRG00000004207	DNAJC19 (ENSPMRG00000004217) #31	ENSPMRG00000004232	ENSPMRG00000004270 #33	ENSPMRG00000004385 #33	DCUN1D1 (ENSPMRG00000004392) #34
Argentine black and white tegu	MODERN SPECIES	21	NCEH1 (ENSSMRG00000023639)	ECT2 (ENSSMRG00000023637)	SPATA16 (ENSSMRG00000023636)	NLGN1 (ENSSMRG00000023635)	NAALADL2 (ENSSMRG00000023630)	TBL1XR1 (ENSSMRG00000023626) #13	KCNMB2 (ENSSMRG00000023624) #14	ZMAT3 (ENSSMRG00000023623) #15	PIK3CA (ENSSMRG00000023622) #16	ENSSMRG00000023621	ZNF639 (ENSSMRG00000023620) #18	MFN1 (ENSSMRG00000023619) #19	ENSSMRG00000023618 ##20	ENSSMRG00000023617 #20	NIFK (ENSSMRG00000023616)	ACTL6A (ENSSMRG00000023614) #22	MRPL47 (ENSSMRG00000023613) #23	NDUFB5 (ENSSMRG00000023612) #24	USP13 (ENSSMRG00000023611) #25	PEX5L (ENSSMRG00000023610) #26	ENSSMRG00000023609	TTC14 (ENSSMRG00000023608) #27	ENSSMRG00000023607	CCDC39 (ENSSMRG00000023606) #28	FXR1 (ENSSMRG00000023605) #30	DNAJC19 (ENSSMRG00000023604) #31	ENSSMRG00000023601	ATP11B (ENSSMRG00000023598) #33	DCUN1D1 (ENSSMRG00000023597) #34	MCCC1 (ENSSMRG00000023596) #35	ENSSMRG00000023595
Toxicofera	ANCESTRAL SPECIES	2	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00940000153421.a.b #13	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT01030000235369	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00390000011515	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00960000190572	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384 #31	ENSGT00940000160614 #32	ENSGT00940000156162.C #33	ENSGT00940000154552 #34	ENSGT00940000156941 #35	ENSGT00950000182899.C.a #36	ENSGT00940000161734
Elapidae	ANCESTRAL SPECIES	4	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00940000153421.a.b #13	ENSGT00950000183039.B.b.a #14	ENSGT00390000006293.td	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT01030000235369	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00390000011515	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00960000190572	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384 #31	ENSGT00940000160614 #32	ENSGT00940000156162.C #33	ENSGT00940000154552 #34	ENSGT00940000156941 #35	ENSGT00950000182899.C.a #36	ENSGT00940000159676 #37
Elapidae_a	ANCESTRAL SPECIES		ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00940000153421.a.b.u #13	ENSGT00950000183039.B.b.a #14	ENSGT00390000006293.td	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT01030000235369	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00390000011515	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00960000190572	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384 #31	ENSGT00940000160614 #32	ENSGT00940000156162.C #33	ENSGT00940000154552 #34	ENSGT00940000156941 #35	ENSGT00950000182899.C.a #36	ENSGT00940000164015
Acanthophiinae	ANCESTRAL SPECIES	1	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00940000153421.a.b.u #13	ENSGT00950000183039.B.b.a #14	ENSGT00390000006293.td	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT01030000235369	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00390000011515	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00960000190572	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384 #31	ENSGT00940000160614 #32	ENSGT00940000156162.C #33	ENSGT00940000154552 #34	ENSGT00940000156941 #35	ENSGT00950000182899.C.a #36	ENSGT00940000164015
Mainland tiger snake	MODERN SPECIES		SPATA16 (ENSNSUG00000003835)	ENSNSUG00000003858	ENSNSUG00000003867	NLGN1 (ENSNSUG00000003879)	NAALADL2 (ENSNSUG00000003894)	TBL1XR1 (ENSNSUG00000003899) #13	KCNMB2 (ENSNSUG00000003916) #14	ENSNSUG00000003919	ZMAT3 (ENSNSUG00000003923) #15	PIK3CA (ENSNSUG00000003932) #16	ENSNSUG00000004425	ZNF639 (ENSNSUG00000004427) #18	MFN1 (ENSNSUG00000004432) #19	GNB4 (ENSNSUG00000004440) #20	NIFK (ENSNSUG00000004538)	ACTL6A (ENSNSUG00000004551) #22	MRPL47 (ENSNSUG00000004553) #23	NDUFB5 (ENSNSUG00000004556) #24	USP13 (ENSNSUG00000004559) #25	PEX5L (ENSNSUG00000004565) #26	TTC14 (ENSNSUG00000004573) #27	CCDC39 (ENSNSUG00000004589) #28	FXR1 (ENSNSUG00000004596) #30	DNAJC19 (ENSNSUG00000004600) #31	SOX2 (ENSNSUG00000004653) #32
Eastern brown snake	MODERN SPECIES	29	TNFSF10 (ENSPTXG00000013335)	NCEH1 (ENSPTXG00000013334)	ENSPTXG00000013332	ENSPTXG00000013331	SPATA16 (ENSPTXG00000013329)	NLGN1 (ENSPTXG00000013325)	NAALADL2 (ENSPTXG00000013319)	TBL1XR1 (ENSPTXG00000013314) #13	KCNMB2 (ENSPTXG00000017809) #14	ZMAT3 (ENSPTXG00000017808) #15	PIK3CA (ENSPTXG00000017806) #16	ZNF639 (ENSPTXG00000017805) #18	MFN1 (ENSPTXG00000017761) #19	GNB4 (ENSPTXG00000017756) #20	NIFK (ENSPTXG00000017754)	ACTL6A (ENSPTXG00000017752) #22	MRPL47 (ENSPTXG00000017751) #23	NDUFB5 (ENSPTXG00000017750) #24	USP13 (ENSPTXG00000017659) #25	PEX5L (ENSPTXG00000017655) #26	TTC14 (ENSPTXG00000017654) #27	ENSPTXG00000017653	ENSPTXG00000017651 #28	FXR1 (ENSPTXG00000017650) #30	DNAJC19 (ENSPTXG00000017649) #31	SOX2 (ENSPTXG00000017648) #32	ENSPTXG00000017647	ATP11B (ENSPTXG00000017645) #33	DCUN1D1 (ENSPTXG00000017644) #34	MCCC1 (ENSPTXG00000017643) #35	LAMP3 (ENSPTXG00000017642)
Blue-lipped sea krait	MODERN SPECIES	3690															NIFK (ENSLLTG00000007602)	ACTL6A (ENSLLTG00000007568) #22	MRPL47 (ENSLLTG00000007524) #23	NDUFB5 (ENSLLTG00000007498) #24
Indian cobra	MODERN SPECIES	3	NCEH1 (ENSNNAG00000016440)	ECT2 (ENSNNAG00000016490)	SPATA16 (ENSNNAG00000016632)	NLGN1 (ENSNNAG00000016645)	NAALADL2 (ENSNNAG00000016653)	TBL1XR1 (ENSNNAG00000016658) #13	KCNMB2 (ENSNNAG00000016680) #14	ENSNNAG00000007595	ENSNNAG00000007631	ZMAT3 (ENSNNAG00000007645) #15	PIK3CA (ENSNNAG00000007680) #16	ZNF639 (ENSNNAG00000007836) #18	MFN1 (ENSNNAG00000007861) #19	GNB4 (ENSNNAG00000007920) #20	NIFK (ENSNNAG00000007941)	ACTL6A (ENSNNAG00000007971) #22	MRPL47 (ENSNNAG00000008025) #23	NDUFB5 (ENSNNAG00000008239) #24	USP13 (ENSNNAG00000008293) #25	PEX5L (ENSNNAG00000008347) #26	TTC14 (ENSNNAG00000008565) #27	ENSNNAG00000008598	CCDC39 (ENSNNAG00000008649) #28	FXR1 (ENSNNAG00000008767) #30	DNAJC19 (ENSNNAG00000010510) #31	SOX2 (ENSNNAG00000010554) #32	ATP11B (ENSNNAG00000010604) #33	DCUN1D1 (ENSNNAG00000011093) #34	MCCC1 (ENSNNAG00000011141) #35	ENSNNAG00000011193 #36	MCF2L2 (ENSNNAG00000011227)
Lizard	MODERN SPECIES	2	ENSACAG00000034977	ENSACAG00000037636	TBL1XR1 (ENSACAG00000013442) #13	ENSACAG00000041605	ENSACAG00000040731	ENSACAG00000036596	KCNMB2 (ENSACAG00000005012) #14	ENSACAG00000042133	ZMAT3 (ENSACAG00000005005) #15	PIK3CA (ENSACAG00000004872) #16	ZNF639 (ENSACAG00000044413) #18	MFN1 (ENSACAG00000004702) #19	GNB4 (ENSACAG00000004667) #20	ENSACAG00000004655	ENSACAG00000044517	ACTL6A (ENSACAG00000004548) #22	MRPL47 (ENSACAG00000043862) #23	NDUFB5 (ENSACAG00000004465) #24	USP13 (ENSACAG00000004318) #25	PEX5L (ENSACAG00000004210) #26	TTC14 (ENSACAG00000004108) #27	ENSACAG00000044880	ENSACAG00000040084	CCDC39 (ENSACAG00000004063) #28	FXR1 (ENSACAG00000003918) #30	DNAJC19 (ENSACAG00000003917) #31	ENSACAG00000042518	ENSACAG00000040070	ENSACAG00000038324	ATP11B (ENSACAG00000007250) #33	DCUN1D1 (ENSACAG00000007413) #34
tuatara	MODERN SPECIES	1534									TBL1XR1 (ENSSPUG00000014823) #13	KCNMB2 (ENSSPUG00000014799) #14	ZMAT3 (ENSSPUG00000014753) #15	PIK3CA (ENSSPUG00000014720) #16	ZNF639 (ENSSPUG00000014710) #18	MFN1 (ENSSPUG00000014691) #19	GNB4 (ENSSPUG00000014672) #20	ACTL6A (ENSSPUG00000014641) #22	MRPL47 (ENSSPUG00000014635) #23	NDUFB5 (ENSSPUG00000014622) #24	USP13 (ENSSPUG00000014601) #25	PEX5L (ENSSPUG00000014580) #26	ENSSPUG00000014567 #27	ENSSPUG00000014559 #27	CCDC39 (ENSSPUG00000014545) #28	FXR1 (ENSSPUG00000014501) #30	DNAJC19 (ENSSPUG00000014476) #31	ENSSPUG00000014466	SOX2 (ENSSPUG00000014432) #32	ENSSPUG00000014421 #33	ENSSPUG00000014405 #33	ENSSPUG00000014393 #33	DCUN1D1 (ENSSPUG00000014386) #34
Archelosauria	ANCESTRAL SPECIES	11	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00940000153421.a.b #13	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT01030000235369.a	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00960000190572	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384 #31	ENSGT00940000160614 #32	ENSGT00940000156162.C #33	ENSGT00940000154552 #34	ENSGT00940000156941 #35	ENSGT00950000182899.C.a #36	ENSGT00940000161734
Archosauria	ANCESTRAL SPECIES	10	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00940000153421.a.b #13	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00960000190572	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384 #31	ENSGT00940000160614 #32	ENSGT00940000156162.C #33	ENSGT00940000154552 #34	ENSGT00940000156941 #35	ENSGT00950000182899.C.a #36	ENSGT00940000161734
Aves	ANCESTRAL SPECIES	13	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00940000153421.a.b #13	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384 #31	ENSGT00940000160614 #32	ENSGT00940000156162.C #33	ENSGT00940000154552 #34	ENSGT00940000156941 #35	ENSGT00950000182899.C.a #36	ENSGT00940000161734	ENSGT00940000159676 #37
Neognathae	ANCESTRAL SPECIES	9	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00940000153421.a.b #13	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384 #31	ENSGT00940000160614 #32	ENSGT00940000156162.C #33	ENSGT00940000154552 #34	ENSGT00940000156941 #35	ENSGT00950000182899.C.a #36	ENSGT00940000161734	ENSGT00940000159676 #37
Galloanserae	ANCESTRAL SPECIES	16	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00940000153421.a.b #13	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384 #31	ENSGT00940000160614 #32	ENSGT00940000156162.C #33	ENSGT00940000154552 #34	ENSGT00940000156941 #35	ENSGT00950000182899.C.a #36	ENSGT00940000159676 #37	ENSGT00990000203899
Phasianidae	ANCESTRAL SPECIES	9	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00940000153421.a.b #13	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384.e #31	ENSGT00940000160614 #32	ENSGT00940000156162.C #33	ENSGT00940000154552 #34	ENSGT00940000156941 #35	ENSGT00950000182899.C.a #36	ENSGT00940000159676 #37	ENSGT00990000203899
Japanese quail	MODERN SPECIES	27	FNDC3B (ENSCJPG00005014275)	GHS-R (ENSCJPG00005014274)	TNFSF10 (ENSCJPG00005014273)	NCEH1 (ENSCJPG00005014272)	ECT2 (ENSCJPG00005014271)	SPATA16 (ENSCJPG00005014270)	NLGN1 (ENSCJPG00005014267)	NAALADL2 (ENSCJPG00005014265)	TBL1XR1 (ENSCJPG00005014262) #13	KCNMB2 (ENSCJPG00005014256) #14	ZMAT3 (ENSCJPG00005014255) #15	PIK3CA (ENSCJPG00005014254) #16	ZNF639 (ENSCJPG00005014253) #18	MFN1 (ENSCJPG00005014252) #19	GNB4 (ENSCJPG00005014251) #20	ACTL6A (ENSCJPG00005014250) #22	MRPL47 (ENSCJPG00005014249) #23	NDUFB5 (ENSCJPG00005014248) #24	USP13 (ENSCJPG00005014247) #25	PEX5L (ENSCJPG00005014246) #26	TTC14 (ENSCJPG00005014245) #27	CCDC39 (ENSCJPG00005014244) #28	FXR1 (ENSCJPG00005014242) #30	DNAJC19 (ENSCJPG00005014236) #31	SOX2 (ENSCJPG00005014232) #32	ATP11B (ENSCJPG00005014227) #33	DCUN1D1 (ENSCJPG00005014226) #34	MCCC1 (ENSCJPG00005014225) #35	ENSCJPG00005014224 #36	B3GNT5 (ENSCJPG00005014223) #37	MCF2L2 (ENSCJPG00005013794)
Phasianidae_b	ANCESTRAL SPECIES	12	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00940000153421.a.b #13	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384.e #31	ENSGT00940000160614 #32	ENSGT00940000156162.C #33	ENSGT00940000154552 #34	ENSGT00940000156941 #35	ENSGT00950000182899.C.a #36	ENSGT00940000159676 #37	ENSGT00990000203899
Chicken	MODERN SPECIES	38	FNDC3B (ENSGALG00010018579)	GHSR (ENSGALG00010018549)	TNFSF10 (ENSGALG00010018540)	NCEH1 (ENSGALG00010018534)	ECT2 (ENSGALG00010018517)	SPATA16 (ENSGALG00010018507)	NLGN1 (ENSGALG00010018484)	NAALADL2 (ENSGALG00010018465)	TBL1XR1 (ENSGALG00010018396) #13	KCNMB2 (ENSGALG00010018349) #14	ZMAT3 (ENSGALG00010018317) #15	PIK3CA (ENSGALG00010018296) #16	ZNF639 (ENSGALG00010018275) #18	MFN1 (ENSGALG00010018255) #19	GNB4 (ENSGALG00010018185) #20	ACTL6A (ENSGALG00010018172) #22	MRPL47 (ENSGALG00010018143) #23	NDUFB5 (ENSGALG00010018137) #24	USP13 (ENSGALG00010018123) #25	PEX5L (ENSGALG00010018055) #26	TTC14 (ENSGALG00010018039) #27	CCDC39 (ENSGALG00010018026) #28	FXR1 (ENSGALG00010016652) #30	DNAJC19 (ENSGALG00010016614) #31	SOX2 (ENSGALG00010016609) #32	ATP11B (ENSGALG00010016588) #33	DCUN1D1 (ENSGALG00010016529) #34	MCCC1 (ENSGALG00010016475) #35	LAMP3 (ENSGALG00010016456) #36	B3GNT5 (ENSGALG00010016431) #37	MCF2L2 (ENSGALG00010016355)
Turkey	MODERN SPECIES	2	GHSR (ENSMGAG00000010038)	TNFSF10 (ENSMGAG00000010032)	NCEH1 (ENSMGAG00000010017)	ECT2 (ENSMGAG00000009941)	SPATA16 (ENSMGAG00000009930)	NLGN1 (ENSMGAG00000009919)	NAALADL2 (ENSMGAG00000009912)	TBL1XR1 (ENSMGAG00000009892) #13	ENSMGAG00000021926	KCNMB2 (ENSMGAG00000009882) #14	ZMAT3 (ENSMGAG00000009873) #15	PIK3CA (ENSMGAG00000009828) #16	ZNF639 (ENSMGAG00000009823) #18	MFN1 (ENSMGAG00000009801) #19	GNB4 (ENSMGAG00000002359) #20	ACTL6A (ENSMGAG00000009756) #22	NDUFB5 (ENSMGAG00000009730) #24	MRPL47 (ENSMGAG00000020958) #23	USP13 (ENSMGAG00000009725) #25	PEX5L (ENSMGAG00000009710) #26	TTC14 (ENSMGAG00000009680) #27	CCDC39 (ENSMGAG00000009659) #28	FXR1 (ENSMGAG00000009602) #30	ENSMGAG00000021069 #31	ATP11B (ENSMGAG00000009540) #33	DCUN1D1 (ENSMGAG00000009535) #34	MCCC1 (ENSMGAG00000009494) #35	ENSMGAG00000009487 #36	B3GNT5 (ENSMGAG00000016047) #37	ENSMGAG00000020114	MCF2L2 (ENSMGAG00000009434)
Anatidae	ANCESTRAL SPECIES	31	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00940000153421.a.b #13	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384 #31	ENSGT00940000156162.C #33	ENSGT00940000154552 #34	ENSGT00940000156941 #35	ENSGT00950000182899.C.a #36	ENSGT00940000159676 #37	ENSGT00940000161734	ENSGT00550000074917
Pink-footed goose	MODERN SPECIES	72	FNDC3B (ENSABRG00000001285)	GHSR (ENSABRG00000001233)	TNFSF10 (ENSABRG00000001164)	NCEH1 (ENSABRG00000001148)	ECT2 (ENSABRG00000001001)	SPATA16 (ENSABRG00000000786)	NLGN1 (ENSABRG00000022582)	NAALADL2 (ENSABRG00000022575)	TBL1XR1 (ENSABRG00000022555) #13	KCNMB2 (ENSABRG00000022545) #14	ZMAT3 (ENSABRG00000022537) #15	PIK3CA (ENSABRG00000022535) #16	ZNF639 (ENSABRG00000022534) #18	MFN1 (ENSABRG00000022532) #19	GNB4 (ENSABRG00000022531) #20	ACTL6A (ENSABRG00000022528) #22	MRPL47 (ENSABRG00000022527) #23	NDUFB5 (ENSABRG00000022526) #24	USP13 (ENSABRG00000022524) #25	PEX5L (ENSABRG00000022519) #26	TTC14 (ENSABRG00000022518) #27	ENSABRG00000022512 #28
Duck	MODERN SPECIES	27	FNDC3B (ENSAPLG00000012065)	GHSR (ENSAPLG00000012064)	TNFSF10 (ENSAPLG00000022295)	NCEH1 (ENSAPLG00000011627)	ECT2 (ENSAPLG00000010339)	SPATA16 (ENSAPLG00000010186)	NLGN1 (ENSAPLG00000010082)	NAALADL2 (ENSAPLG00000010077)	TBL1XR1 (ENSAPLG00000013445) #13	KCNMB2 (ENSAPLG00000020595) #14	ZMAT3 (ENSAPLG00000013292) #15	PIK3CA (ENSAPLG00000012924) #16	ZNF639 (ENSAPLG00000012914) #18	MFN1 (ENSAPLG00000012500) #19	GNB4 (ENSAPLG00000012235) #20	ACTL6A (ENSAPLG00000011809) #22	MRPL47 (ENSAPLG00000011793) #23	USP13 (ENSAPLG00000011239) #25	PEX5L (ENSAPLG00000011193) #26	TTC14 (ENSAPLG00000010921) #27	CCDC39 (ENSAPLG00000010760) #28	FXR1 (ENSAPLG00000010032) #30	DNAJC19 (ENSAPLG00000009956) #31	ATP11B (ENSAPLG00000009719) #33	DCUN1D1 (ENSAPLG00000009496) #34	MCCC1 (ENSAPLG00000008989) #35	ENSAPLG00000021030 #36	B3GNT5 (ENSAPLG00000000814) #37	MCF2L2 (ENSAPLG00000007943)	RFC4 (ENSAPLG00000007380)	EIF4A2 (ENSAPLG00000006751)
Neognathae_b	ANCESTRAL SPECIES	11	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00940000153421.a.b #13	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384 #31	ENSGT00940000160614 #32	ENSGT00940000156162.C #33	ENSGT00940000154552 #34	ENSGT00940000156941 #35	ENSGT00950000182899.C.a #36	ENSGT00940000161734	ENSGT00940000159676 #37
Neognathae_c	ANCESTRAL SPECIES	13	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00940000153421.a.b #13	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384 #31	ENSGT00940000156162.C #33	ENSGT00940000154552 #34	ENSGT00940000156941 #35	ENSGT00950000182899.C.a #36	ENSGT00940000161734	ENSGT00940000159676 #37	ENSGT00990000203899
Golden eagle	MODERN SPECIES	1	TNFSF10 (ENSACCG00020004457)	NCEH1 (ENSACCG00020004468)	ENSACCG00020004485	ENSACCG00020004492	SPATA16 (ENSACCG00020004502)	NLGN1 (ENSACCG00020004515)	NAALADL2 (ENSACCG00020004541)	TBL1XR1 (ENSACCG00020004568) #13	KCNMB2 (ENSACCG00020004589) #14	ENSACCG00020004603	ZMAT3 (ENSACCG00020004611) #15	PIK3CA (ENSACCG00020004627) #16	ZNF639 (ENSACCG00020004651) #18	MFN1 (ENSACCG00020004658) #19	GNB4 (ENSACCG00020004669) #20	ACTL6A (ENSACCG00020004677) #22	MRPL47 (ENSACCG00020004710) #23	NDUFB5 (ENSACCG00020000356) #24	USP13 (ENSACCG00020000413) #25	PEX5L (ENSACCG00020000831) #26	TTC14 (ENSACCG00020000953) #27	CCDC39 (ENSACCG00020000987) #28	FXR1 (ENSACCG00020001041) #30	DNAJC19 (ENSACCG00020001068) #31	ATP11B (ENSACCG00020001153) #33	DCUN1D1 (ENSACCG00020001287) #34	MCCC1 (ENSACCG00020001312) #35	ENSACCG00020001340 #36	MCF2L2 (ENSACCG00020001422)	B3GNT5 (ENSACCG00020001574) #37	RFC4 (ENSACCG00020001586)
Kakapo	MODERN SPECIES	25	GHSR (ENSSHBG00005017789)	TNFSF10 (ENSSHBG00005017794)	NCEH1 (ENSSHBG00005017804)	ENSSHBG00005017809	ENSSHBG00005017821	SPATA16 (ENSSHBG00005017829)	NLGN1 (ENSSHBG00005017842)	NAALADL2 (ENSSHBG00005017848)	TBL1XR1 (ENSSHBG00005017856) #13	KCNMB2 (ENSSHBG00005017869) #14	ZMAT3 (ENSSHBG00005017878) #15	PIK3CA (ENSSHBG00005000694) #16	ZNF639 (ENSSHBG00005000719) #18	MFN1 (ENSSHBG00005010431) #19	GNB4 (ENSSHBG00005010477) #20	ACTL6A (ENSSHBG00005010515) #22	MRPL47 (ENSSHBG00005010546) #23	NDUFB5 (ENSSHBG00005010573) #24	USP13 (ENSSHBG00005010631) #25	PEX5L (ENSSHBG00005010862) #26	TTC14 (ENSSHBG00005012064) #27	CCDC39 (ENSSHBG00005012103) #28	FXR1 (ENSSHBG00005012156) #30	DNAJC19 (ENSSHBG00005012189) #31	ATP11B (ENSSHBG00005012327) #33	DCUN1D1 (ENSSHBG00005012436) #34	MCCC1 (ENSSHBG00005012474) #35	ENSSHBG00005012503 #36	MCF2L2 (ENSSHBG00005012853)	B3GNT5 (ENSSHBG00005015288) #37	ENSSHBG00005015293
Passeriformes	ANCESTRAL SPECIES	9	ENSGT01010000228465	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00940000153421.a.b #13	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384 #31	ENSGT00940000160614 #32	ENSGT00940000156162.C #33	ENSGT00940000154552 #34	ENSGT00940000156941 #35	ENSGT00950000182899.C.a #36	ENSGT00940000159676 #37	ENSGT00940000161734
Great tit	MODERN SPECIES	29	ENSPMJG00000004658	FNDC3B (ENSPMJG00000003059)	GHSR (ENSPMJG00000003056)	TNFSF10 (ENSPMJG00000003047)	NCEH1 (ENSPMJG00000003040)	ECT2 (ENSPMJG00000003020)	NLGN1 (ENSPMJG00000002987)	NAALADL2 (ENSPMJG00000002940)	TBL1XR1 (ENSPMJG00000002841) #13	KCNMB2 (ENSPMJG00000002756) #14	ZMAT3 (ENSPMJG00000002709) #15	PIK3CA (ENSPMJG00000002701) #16	ZNF639 (ENSPMJG00000002695) #18	MFN1 (ENSPMJG00000002684) #19	GNB4 (ENSPMJG00000002659) #20	ACTL6A (ENSPMJG00000002638) #22	MRPL47 (ENSPMJG00000002630) #23	NDUFB5 (ENSPMJG00000002618) #24	USP13 (ENSPMJG00000002592) #25	PEX5L (ENSPMJG00000002525) #26	TTC14 (ENSPMJG00000002481) #27	CCDC39 (ENSPMJG00000002417) #28	FXR1 (ENSPMJG00000002237) #30	DNAJC19 (ENSPMJG00000002207) #31	ATP11B (ENSPMJG00000001957) #33	DCUN1D1 (ENSPMJG00000001941) #34	MCCC1 (ENSPMJG00000001932) #35	ENSPMJG00000001928 #36	B3GNT5 (ENSPMJG00000001924) #37	MCF2L2 (ENSPMJG00000001772)	RFC4 (ENSPMJG00000001751)
Passeriformes_d	ANCESTRAL SPECIES	10	ENSGT01010000228465	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00940000153421.a.b #13	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384 #31	ENSGT00940000160614 #32	ENSGT00940000156162.C #33	ENSGT00940000154552 #34	ENSGT00940000156941 #35	ENSGT00950000182899.C.a #36	ENSGT00940000159676 #37	ENSGT00940000161734
Flycatcher	MODERN SPECIES	28	PLD1 (ENSFALG00000008477)	FNDC3B (ENSFALG00000008467)	GHSR (ENSFALG00000008461)	TNFSF10 (ENSFALG00000026290)	NCEH1 (ENSFALG00000008448)	ECT2 (ENSFALG00000008443)	NLGN1 (ENSFALG00000008434)	NAALADL2 (ENSFALG00000008425)	TBL1XR1 (ENSFALG00000008416) #13	KCNMB2 (ENSFALG00000008411) #14	ZMAT3 (ENSFALG00000008403) #15	PIK3CA (ENSFALG00000008395) #16	ZNF639 (ENSFALG00000027836) #18	MFN1 (ENSFALG00000008386) #19	GNB4 (ENSFALG00000008376) #20	ACTL6A (ENSFALG00000008369) #22	MRPL47 (ENSFALG00000008365) #23	NDUFB5 (ENSFALG00000025849) #24	USP13 (ENSFALG00000008348) #25	PEX5L (ENSFALG00000008333) #26	TTC14 (ENSFALG00000008319) #27	CCDC39 (ENSFALG00000008311) #28	FXR1 (ENSFALG00000008301) #30	DNAJC19 (ENSFALG00000008296) #31	SOX2 (ENSFALG00000014383) #32	ATP11B (ENSFALG00000008284) #33	MCCC1 (ENSFALG00000008252) #35	ENSFALG00000027817	ENSFALG00000024579 #36	B3GNT5 (ENSFALG00000015298) #37	ENSFALG00000023180
Passeriformes_g	ANCESTRAL SPECIES	11	ENSGT01010000228465	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00940000153421.a.b #13	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384 #31	ENSGT00940000160614 #32	ENSGT00940000156162.C #33	ENSGT00940000154552 #34	ENSGT00940000156941 #35	ENSGT00950000182899.C.a #36	ENSGT00940000159676 #37	ENSGT00940000161734
Passeroidea	ANCESTRAL SPECIES	13	ENSGT01010000228465	ENSGT00940000157005	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00940000153421.a.b #13	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384 #31	ENSGT00940000156162.C #33	ENSGT00940000154552 #34	ENSGT00940000156941 #35	ENSGT00950000182899.C.a #36	ENSGT00940000159676 #37	ENSGT00940000161734	ENSGT00550000074917
Common canary	MODERN SPECIES	10	PLD1 (ENSSCAG00000012001)	FNDC3B (ENSSCAG00000012019)	GHSR (ENSSCAG00000012030)	TNFSF10 (ENSSCAG00000012032)	NCEH1 (ENSSCAG00000012047)	ECT2 (ENSSCAG00000012156)	NLGN1 (ENSSCAG00000012186)	NAALADL2 (ENSSCAG00000012244)	TBL1XR1 (ENSSCAG00000012275) #13	KCNMB2 (ENSSCAG00000012297) #14	ZMAT3 (ENSSCAG00000012302) #15	PIK3CA (ENSSCAG00000012311) #16	ZNF639 (ENSSCAG00000012318) #18	MFN1 (ENSSCAG00000012323) #19	GNB4 (ENSSCAG00000012330) #20	ACTL6A (ENSSCAG00000012338) #22	MRPL47 (ENSSCAG00000012343) #23	NDUFB5 (ENSSCAG00000012346) #24	USP13 (ENSSCAG00000012352) #25	PEX5L (ENSSCAG00000012363) #26	TTC14 (ENSSCAG00000012380) #27	CCDC39 (ENSSCAG00000012392) #28	FXR1 (ENSSCAG00000012440) #30	DNAJC19 (ENSSCAG00000012624) #31	ATP11B (ENSSCAG00000012637) #33	DCUN1D1 (ENSSCAG00000012652) #34	MCCC1 (ENSSCAG00000012658) #35	ENSSCAG00000012659 #36	MCF2L2 (ENSSCAG00000012810)	B3GNT5 (ENSSCAG00000013681) #37	RFC4 (ENSSCAG00000013683)
Zebra finch	MODERN SPECIES	31	ENSTGUG00000018991	FNDC3B (ENSTGUG00000010824)	GHSR (ENSTGUG00000010823)	TNFSF10 (ENSTGUG00000010819)	NCEH1 (ENSTGUG00000025400)	ECT2 (ENSTGUG00000010794)	NLGN1 (ENSTGUG00000021670)	NAALADL2 (ENSTGUG00000010781)	TBL1XR1 (ENSTGUG00000010773) #13	KCNMB2 (ENSTGUG00000026184) #14	ZMAT3 (ENSTGUG00000027964) #15	PIK3CA (ENSTGUG00000010736) #16	ZNF639 (ENSTGUG00000027191) #18	MFN1 (ENSTGUG00000010693) #19	GNB4 (ENSTGUG00000021021) #20	ACTL6A (ENSTGUG00000010657) #22	MRPL47 (ENSTGUG00000010649) #23	NDUFB5 (ENSTGUG00000010639) #24	USP13 (ENSTGUG00000010622) #25	PEX5L (ENSTGUG00000010602) #26	TTC14 (ENSTGUG00000010592) #27	CCDC39 (ENSTGUG00000010586) #28	FXR1 (ENSTGUG00000010560) #30	DNAJC19 (ENSTGUG00000010557) #31	ENSTGUG00000019041	ATP11B (ENSTGUG00000010523) #33	DCUN1D1 (ENSTGUG00000010517) #34	MCCC1 (ENSTGUG00000010506) #35	ENSTGUG00000024117 #36	B3GNT5 (ENSTGUG00000021356) #37	MCF2L2 (ENSTGUG00000010484)
Medium ground finch	MODERN SPECIES	12	PLD1 (ENSGFOG00000008326)	FNDC3B (ENSGFOG00000008069)	GHSR (ENSGFOG00000008037)	TNFSF10 (ENSGFOG00000008030)	NCEH1 (ENSGFOG00000007873)	ECT2 (ENSGFOG00000007813)	NLGN1 (ENSGFOG00000007784)	NAALADL2 (ENSGFOG00000007762)	TBL1XR1 (ENSGFOG00000007746) #13	KCNMB2 (ENSGFOG00000007709) #14	ZMAT3 (ENSGFOG00000007697) #15	PIK3CA (ENSGFOG00000007668) #16	ZNF639 (ENSGFOG00000007659) #18	MFN1 (ENSGFOG00000007632) #19	GNB4 (ENSGFOG00000007624) #20	ACTL6A (ENSGFOG00000007543) #22	MRPL47 (ENSGFOG00000007503) #23	NDUFB5 (ENSGFOG00000007487) #24	USP13 (ENSGFOG00000007465) #25	PEX5L (ENSGFOG00000007428) #26	ENSGFOG00000007366	CCDC39 (ENSGFOG00000007337) #28	FXR1 (ENSGFOG00000005246) #30	DNAJC19 (ENSGFOG00000005157) #31	SOX2 (ENSGFOG00000005149) #32	ENSGFOG00000005136	ATP11B (ENSGFOG00000005085) #33	DCUN1D1 (ENSGFOG00000005071) #34	MCCC1 (ENSGFOG00000005054) #35	ENSGFOG00000005046 #36	B3GNT5 (ENSGFOG00000005034) #37
African ostrich	MODERN SPECIES	931												ZMAT3 (ENSSCUG00000017337) #15	PIK3CA (ENSSCUG00000017341) #16	MFN1 (ENSSCUG00000017346) #19	GNB4 (ENSSCUG00000017351) #20	ACTL6A (ENSSCUG00000017355) #22	MRPL47 (ENSSCUG00000017373) #23	NDUFB5 (ENSSCUG00000017374) #24	USP13 (ENSSCUG00000017376) #25	PEX5L (ENSSCUG00000017378) #26	TTC14 (ENSSCUG00000017384) #27	CCDC39 (ENSSCUG00000017389) #28	ENSSCUG00000017390	FXR1 (ENSSCUG00000017419) #30	ENSSCUG00000017441	DNAJC19 (ENSSCUG00000017443) #31	ATP11B (ENSSCUG00000017450) #33
Australian saltwater crocodile	MODERN SPECIES	30	TNFSF10 (ENSCPRG00005009508)	NCEH1 (ENSCPRG00005009516)	ECT2 (ENSCPRG00005009519)	SPATA16 (ENSCPRG00005009547)	ENSCPRG00005009577	ENSCPRG00005009587	NAALADL2 (ENSCPRG00005009597)	TBL1XR1 (ENSCPRG00005009616) #13	ENSCPRG00005009640	KCNMB2 (ENSCPRG00005009647) #14	ZMAT3 (ENSCPRG00005009651) #15	ENSCPRG00005009658 #16	ZNF639 (ENSCPRG00005009780) #18	MFN1 (ENSCPRG00005009802) #19	GNB4 (ENSCPRG00005009816) #20	ACTL6A (ENSCPRG00005010054) #22	MRPL47 (ENSCPRG00005010062) #23	NDUFB5 (ENSCPRG00005010066) #24	USP13 (ENSCPRG00005010083) #25	PEX5L (ENSCPRG00005010104) #26	TTC14 (ENSCPRG00005010137) #27	ENSCPRG00005010293	CCDC39 (ENSCPRG00005010308) #28	DNAJC19 (ENSCPRG00005010343) #31	FXR1 (ENSCPRG00005010361) #30	SOX2 (ENSCPRG00005010584) #32	ENSCPRG00005010594	ATP11B (ENSCPRG00005010622) #33	DCUN1D1 (ENSCPRG00005010672) #34	MCCC1 (ENSCPRG00005010677) #35	LAMP3 (ENSCPRG00005010688)
Cryptodira	ANCESTRAL SPECIES	16	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00940000153421.a.b #13	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT01030000235369.a	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384 #31	ENSGT00940000160614 #32	ENSGT00940000156162.C #33	ENSGT00940000154552 #34	ENSGT00940000156941 #35	ENSGT00950000182899.C.a #36	ENSGT00940000164015	ENSGT00940000159676 #37
Testudinoidea	ANCESTRAL SPECIES	9	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00940000153421.a.b #13	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT01030000235369.a	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701.n #27	ENSGT00390000013701.m #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384 #31	ENSGT00940000160614 #32	ENSGT00940000156162.C #33	ENSGT00940000154552 #34	ENSGT00940000156941 #35	ENSGT00950000182899.C.a #36	ENSGT00940000159676 #37
Emydidae	ANCESTRAL SPECIES	3	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00940000153421.a.b #13	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT01030000235369.a	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701.n #27	ENSGT00390000013701.m #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384 #31	ENSGT00940000160614 #32	ENSGT00940000156162.C #33	ENSGT00940000154552 #34	ENSGT00940000156941 #35	ENSGT00950000182899.C.a #36	ENSGT00940000161734
Three-toed box turtle	MODERN SPECIES	32	TNFSF10 (ENSTMTG00000009207)	NCEH1 (ENSTMTG00000009220)	ENSTMTG00000009230	ENSTMTG00000009279	SPATA16 (ENSTMTG00000009298)	NLGN1 (ENSTMTG00000009329)	NAALADL2 (ENSTMTG00000009348)	TBL1XR1 (ENSTMTG00000009406) #13	KCNMB2 (ENSTMTG00000009434) #14	ZMAT3 (ENSTMTG00000009458) #15	PIK3CA (ENSTMTG00000009470) #16	ENSTMTG00000009517	ZNF639 (ENSTMTG00000009549) #18	MFN1 (ENSTMTG00000009563) #19	GNB4 (ENSTMTG00000009587) #20	ACTL6A (ENSTMTG00000009615) #22	MRPL47 (ENSTMTG00000009647) #23	NDUFB5 (ENSTMTG00000009666) #24	USP13 (ENSTMTG00000009685) #25	PEX5L (ENSTMTG00000009761) #26	TTC14 (ENSTMTG00000009812) #27	CCDC39 (ENSTMTG00000009881) #28	FXR1 (ENSTMTG00000010020) #30	DNAJC19 (ENSTMTG00000010071) #31	SOX2 (ENSTMTG00000010093) #32	ATP11B (ENSTMTG00000010113) #33	DCUN1D1 (ENSTMTG00000010264) #34	MCCC1 (ENSTMTG00000010280) #35	ENSTMTG00000010301 #36	MCF2L2 (ENSTMTG00000010345)	B3GNT5 (ENSTMTG00000010481) #37
painted turtle	MODERN SPECIES	748						NAALADL2 (ENSCPBG00000026894)	ENSCPBG00000026899	TBL1XR1 (ENSCPBG00000026909) #13	KCNMB2 (ENSCPBG00000026916) #14	ZMAT3 (ENSCPBG00000026917) #15	PIK3CA (ENSCPBG00000026921) #16	ENSCPBG00000026924	ZNF639 (ENSCPBG00000026927) #18	MFN1 (ENSCPBG00000026929) #19	GNB4 (ENSCPBG00000026930) #20	ACTL6A (ENSCPBG00000026932) #22	MRPL47 (ENSCPBG00000026934) #23	NDUFB5 (ENSCPBG00000026935) #24	USP13 (ENSCPBG00000026936) #25	PEX5L (ENSCPBG00000026944) #26	ENSCPBG00000026954 #27	ENSCPBG00000026955 #27	CCDC39 (ENSCPBG00000000173) #28	FXR1 (ENSCPBG00000000223) #30	DNAJC19 (ENSCPBG00000000285) #31	ATP11B (ENSCPBG00000000373) #33	DCUN1D1 (ENSCPBG00000000501) #34	MCCC1 (ENSCPBG00000000534) #35	LAMP3 (ENSCPBG00000000571)	MCF2L2 (ENSCPBG00000000648)	B3GNT5 (ENSCPBG00000000887) #37
Testudinidae	ANCESTRAL SPECIES	7	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00940000153421.a.b #13	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT01030000235369.a	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701.n #27	ENSGT00390000013701.m #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000154384 #31	ENSGT00940000160614 #32	ENSGT00940000156162.C #33	ENSGT00940000154552 #34	ENSGT00940000156941 #35	ENSGT00950000182899.C.a #36	ENSGT00940000159676 #37
Goode s thornscrub tortoise	MODERN SPECIES	23	NCEH1 (ENSGEVG00005008435)	ENSGEVG00005008421	ENSGEVG00005008394	SPATA16 (ENSGEVG00005008353)	ENSGEVG00005008327	NLGN1 (ENSGEVG00005008306)	NAALADL2 (ENSGEVG00005008241)	TBL1XR1 (ENSGEVG00005008179) #13	KCNMB2 (ENSGEVG00005008147) #14	ZMAT3 (ENSGEVG00005008132) #15	PIK3CA (ENSGEVG00005008110) #16	ENSGEVG00005008073	ZNF639 (ENSGEVG00005008054) #18	MFN1 (ENSGEVG00005008013) #19	GNB4 (ENSGEVG00005007979) #20	ACTL6A (ENSGEVG00005007939) #22	MRPL47 (ENSGEVG00005007908) #23	NDUFB5 (ENSGEVG00005007886) #24	USP13 (ENSGEVG00005007750) #25	PEX5L (ENSGEVG00005007677) #26	ENSGEVG00005007645 #27	ENSGEVG00005007619 #27	CCDC39 (ENSGEVG00005007473) #28	FXR1 (ENSGEVG00005007363) #30	DNAJC19 (ENSGEVG00005007338) #31	SOX2 (ENSGEVG00005007325) #32	ATP11B (ENSGEVG00005007238) #33	DCUN1D1 (ENSGEVG00005007193) #34	MCCC1 (ENSGEVG00005007168) #35	ENSGEVG00005007146 #36	B3GNT5 (ENSGEVG00005007129) #37
Abingdon island giant tortoise	MODERN SPECIES	76								TBL1XR1 (ENSCABG00000016872) #13	KCNMB2 (ENSCABG00000016876) #14	ZMAT3 (ENSCABG00000016877) #15	PIK3CA (ENSCABG00000016963) #16	ENSCABG00000017237	ZNF639 (ENSCABG00000017240) #18	MFN1 (ENSCABG00000017278) #19	GNB4 (ENSCABG00000019060) #20	ACTL6A (ENSCABG00000019237) #22	MRPL47 (ENSCABG00000019319) #23	NDUFB5 (ENSCABG00000019321) #24	USP13 (ENSCABG00000019324) #25	PEX5L (ENSCABG00000019326) #26	TTC14 (ENSCABG00000019328) #27	CCDC39 (ENSCABG00000019333) #28	FXR1 (ENSCABG00000019346) #30	DNAJC19 (ENSCABG00000019628) #31	SOX2 (ENSCABG00000019639) #32
Chinese turtle	MODERN SPECIES	2228									KCNMB2 (ENSPSIG00000015760) #14	ZMAT3 (ENSPSIG00000014839) #15	PIK3CA (ENSPSIG00000014440) #16	ZNF639 (ENSPSIG00000014336) #18	ENSPSIG00000014320	MFN1 (ENSPSIG00000013354) #19	GNB4 (ENSPSIG00000013084) #20	ACTL6A (ENSPSIG00000011750) #22	MRPL47 (ENSPSIG00000011536) #23	NDUFB5 (ENSPSIG00000011327) #24	USP13 (ENSPSIG00000010053) #25	PEX5L (ENSPSIG00000009593) #26	TTC14 (ENSPSIG00000009489) #27	ENSPSIG00000000550	CCDC39 (ENSPSIG00000008365) #28	FXR1 (ENSPSIG00000007616) #30	DNAJC19 (ENSPSIG00000007461) #31	SOX2 (ENSPSIG00000000544) #32	ENSPSIG00000000536	ATP11B (ENSPSIG00000006570) #33	DCUN1D1 (ENSPSIG00000017853) #34	MCCC1 (ENSPSIG00000017510) #35	ENSPSIG00000017491
Anura	ANCESTRAL SPECIES	26	ENSGT01100000263484.C.b.a	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299	ENSGT00390000015332	ENSGT00940000155789	ENSGT01030000234598.a.b	ENSGT00940000153421.a.b #13	ENSGT00950000183039.B.b.a #14	ENSGT00730000111202 #15	ENSGT00940000155531.b #16	ENSGT00950000183039.B.a #17	ENSGT00940000156335 #18	ENSGT00390000013727.d #19	ENSGT01000000214413.b.a.a #20	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #27	ENSGT00390000015010 #28	ENSGT00950000183189.a.b.a #30	ENSGT00940000160614 #32	ENSGT00940000156162.C #33	ENSGT00940000154552 #34	ENSGT00940000156941 #35	ENSGT00940000164015	ENSGT00940000161734	ENSGT00940000159676 #37	ENSGT00550000074917
Leishan spiny toad	DUPLICATION
Leishan spiny toad	DUPLICATION
Leishan spiny toad	MODERN SPECIES	829																ENSLLEG00000026596 #22
Leishan spiny toad	MODERN SPECIES	7	NAALADL2 (ENSLLEG00000026863)	ENSLLEG00000026984	TBL1XR1 (ENSLLEG00000027031) #13	ENSLLEG00000027333	KCNMB2 (ENSLLEG00000027366) #14	ZMAT3 (ENSLLEG00000027411) #15	ENSLLEG00000027471	PIK3CA (ENSLLEG00000027506) #16	KCNMB3 (ENSLLEG00000027813) #17	ENSLLEG00000027846 #18	ENSLLEG00000027869	MFN1 (ENSLLEG00000027892) #19	GNB4 (ENSLLEG00000027982) #20	ENSLLEG00000028077	ENSLLEG00000028118 #22	ENSLLEG00000028299 #22	ENSLLEG00000028388 #23	NDUFB5 (ENSLLEG00000028412) #24	USP13 (ENSLLEG00000028479) #25	PEX5L (ENSLLEG00000028895) #26	ENSLLEG00000029002	ENSLLEG00000029013	ENSLLEG00000029020	TTC14 (ENSLLEG00000029050) #27	CCDC39 (ENSLLEG00000029259) #28	ENSLLEG00000029315	ENSLLEG00000029445 #30	ENSLLEG00000029888	ENSLLEG00000029895	ENSLLEG00000029902	ENSLLEG00000029908
Leishan spiny toad	MODERN SPECIES	7	NLGN1 (ENSLLEG00000026838)	NAALADL2 (ENSLLEG00000026863)	ENSLLEG00000026984	TBL1XR1 (ENSLLEG00000027031) #13	ENSLLEG00000027333	KCNMB2 (ENSLLEG00000027366) #14	ZMAT3 (ENSLLEG00000027411) #15	ENSLLEG00000027471	PIK3CA (ENSLLEG00000027506) #16	KCNMB3 (ENSLLEG00000027813) #17	ENSLLEG00000027846 #18	ENSLLEG00000027869	MFN1 (ENSLLEG00000027892) #19	GNB4 (ENSLLEG00000027982) #20	ENSLLEG00000028077	ENSLLEG00000028118 #22	ENSLLEG00000028299 #22	ENSLLEG00000028388 #23	NDUFB5 (ENSLLEG00000028412) #24	USP13 (ENSLLEG00000028479) #25	PEX5L (ENSLLEG00000028895) #26	ENSLLEG00000029002	ENSLLEG00000029013	ENSLLEG00000029020	TTC14 (ENSLLEG00000029050) #27	CCDC39 (ENSLLEG00000029259) #28	ENSLLEG00000029315	ENSLLEG00000029445 #30	ENSLLEG00000029888	ENSLLEG00000029895	ENSLLEG00000029902
Frog	MODERN SPECIES	5	tnfsf10 (ENSXETG00000030595)	nceh1 (ENSXETG00000038694)	ect2 (ENSXETG00000023596)	ENSXETG00000030915	ENSXETG00000044786	nlgn1 (ENSXETG00000001525)	naaladl2 (ENSXETG00000040453)	tbl1xr1 (ENSXETG00000001521) #13	kcnmb2 (ENSXETG00000037867) #14	zmat3 (ENSXETG00000007251) #15	pik3ca (ENSXETG00000007252) #16	kcnmb3 (ENSXETG00000007254) #17	znf639 (ENSXETG00000007256) #18	mfn1 (ENSXETG00000007258) #19	gnb4 (ENSXETG00000007259) #20	actl6a (ENSXETG00000007260) #22	mrpl47 (ENSXETG00000029930) #23	ndufb5 (ENSXETG00000007264) #24	usp13 (ENSXETG00000007265) #25	pex5l (ENSXETG00000032445) #26	ttc14 (ENSXETG00000019435) #27	ccdc39 (ENSXETG00000019437) #28	fxr1 (ENSXETG00000019441) #30	sox2 (ENSXETG00000036807) #32	ENSXETG00000038267	atp11b (ENSXETG00000016814) #33	dcun1d1 (ENSXETG00000016813) #34	mccc1 (ENSXETG00000016826) #35	lamp3 (ENSXETG00000036063)	atp13a-like (ENSXETG00000016833)	plaat1 (ENSXETG00000032952)
Coelacanth	MODERN SPECIES	333									TBL1XR1 (ENSLACG00000016986) #13	KCNMB2 (ENSLACG00000015936) #14	ZMAT3 (ENSLACG00000015780) #15	PIK3CA (ENSLACG00000015507) #16	KCNMB3 (ENSLACG00000015425) #17	MFN1 (ENSLACG00000015275) #19	GNB4 (ENSLACG00000014929) #20	ACTL6A (ENSLACG00000014797) #22	MRPL47 (ENSLACG00000014781) #23	NDUFB5 (ENSLACG00000014749) #24	USP13 (ENSLACG00000014314) #25	PEX5L (ENSLACG00000013935) #26	TTC14 (ENSLACG00000012412) #27	CCDC39 (ENSLACG00000012072) #28	FXR1 (ENSLACG00000011290) #30	DNAJC19 (ENSLACG00000011183) #31	SOX2 (ENSLACG00000006560) #32