Percora_a	ANCESTRAL SPECIES	7	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299 #7	ENSGT00390000015332 #8	ENSGT00940000155789 #10	ENSGT01030000234598.a.b #11	ENSGT00860000135711	ENSGT00940000153421.a.b #13	ENSGT00950000183039.B.b.a #15	ENSGT00730000111202 #16	ENSGT00940000155531.b #17	ENSGT00950000183039.B.a #18	ENSGT00940000156335 #19	ENSGT00390000013727.d #20	ENSGT01000000214413.b.a.a #21	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00910000147128	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00390000015010 #27	ENSGT00950000183189.a.b.a #29	ENSGT00940000154384.g #30	ENSGT00940000160614 #31	ENSGT00940000156162.C.k #33	ENSGT00940000154552 #34	ENSGT00940000156941 #35	ENSGT00950000182899.C.a #36	ENSGT00940000159676 #37
Bovidae	ANCESTRAL SPECIES	9	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299 #7	ENSGT00390000015332 #8	ENSGT00940000155789 #10	ENSGT01030000234598.a.b #11	ENSGT00860000135711	ENSGT00940000153421.a.b #13	ENSGT00950000183039.B.b.a #15	ENSGT00730000111202 #16	ENSGT00940000155531.b #17	ENSGT00950000183039.B.a #18	ENSGT00940000156335 #19	ENSGT00390000013727.d #20	ENSGT01000000214413.b.a.a #21	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00910000147128	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00390000015010 #27	ENSGT00950000183189.a.b.a #29	ENSGT00940000154384.g #30	ENSGT00940000160614 #31	ENSGT00940000156162.C.k #33	ENSGT00940000154552 #34	ENSGT00940000156941 #35	ENSGT00950000182899.C.a #36	ENSGT00940000159676 #37
Caprinae	ANCESTRAL SPECIES	8	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299 #7	ENSGT00390000015332 #8	ENSGT00940000161884.d #9	ENSGT00940000155789 #10	ENSGT01030000234598.a.b #11	ENSGT00940000153421.a.b #13	ENSGT00950000183039.B.b.a #15	ENSGT00730000111202 #16	ENSGT00940000155531.b #17	ENSGT00950000183039.B.a #18	ENSGT00940000156335 #19	ENSGT00390000013727.d #20	ENSGT01000000214413.b.a.a #21	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00910000147128	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00390000015010 #27	ENSGT00950000183189.a.b.a #29	ENSGT00940000154384.g #30	ENSGT00940000160614 #31	ENSGT00940000173300 #32	ENSGT00940000156162.C.k #33	ENSGT00940000154552 #34	ENSGT00940000156941 #35	ENSGT00950000182899.C.a #36
Rambouillet Sheep	MODERN SPECIES		ECT2 (ENSOARG00020000567) #7	SPATA16 (ENSOARG00020000484) #8	ENSOARG00020000457 #9	NLGN1 (ENSOARG00020000438) #10	NAALADL2 (ENSOARG00020000356) #11	ENSOARG00020000331 #12	TBL1XR1 (ENSOARG00020000203) #13	ENSOARG00020000133 #14	KCNMB2 (ENSOARG00020000078) #15	ZMAT3 (ENSOARG00020000075) #16	PIK3CA (ENSOARG00020010030) #17	ENSOARG00020009952 #18	ZNF639 (ENSOARG00020009893) #19	MFN1 (ENSOARG00020009679) #20	GNB4 (ENSOARG00020009587) #21	ACTL6A (ENSOARG00020009394) #22	MRPL47 (ENSOARG00020009272) #23	NDUFB5 (ENSOARG00020009071) #24	USP13 (ENSOARG00020008860) #25	PEX5L (ENSOARG00020007531) #26	CCDC39 (ENSOARG00020006964) #27	TTC14 (ENSOARG00020006723) #28	FXR1 (ENSOARG00020005863) #29	DNAJC19 (ENSOARG00020005775) #30	SOX2 (ENSOARG00020005758) #31	ENSOARG00020005742 #32	ATP11B (ENSOARG00020005548) #33	DCUN1D1 (ENSOARG00020005500) #34	MCCC1 (ENSOARG00020005367) #35	ENSOARG00020005267 #36	B3GNT5 (ENSOARG00020005246) #37
Goat	MODERN SPECIES		NCEH1 (ENSCHIG00000024248)	ECT2 (ENSCHIG00000025581) #7	ENSCHIG00000013430	SPATA16 (ENSCHIG00000023395) #8	ENSCHIG00000009834	NLGN1 (ENSCHIG00000026919) #10	NAALADL2 (ENSCHIG00000018744) #11	TBL1XR1 (ENSCHIG00000010626) #13	KCNMB2 (ENSCHIG00000020065) #15	ZMAT3 (ENSCHIG00000025074) #16	PIK3CA (ENSCHIG00000016154) #17	KCNMB3 (ENSCHIG00000021624) #18	ZNF639 (ENSCHIG00000025519) #19	MFN1 (ENSCHIG00000021326) #20	GNB4 (ENSCHIG00000011036) #21	ACTL6A (ENSCHIG00000017016) #22	MRPL47 (ENSCHIG00000013922) #23	NDUFB5 (ENSCHIG00000024994) #24	USP13 (ENSCHIG00000020163) #25	ENSCHIG00000017176	PEX5L (ENSCHIG00000021885) #26	TTC14 (ENSCHIG00000013993) #28	CCDC39 (ENSCHIG00000025334) #27	ENSCHIG00000002251	ENSCHIG00000025304	FXR1 (ENSCHIG00000017202) #29	ENSCHIG00000022989 #30	SOX2 (ENSCHIG00000011126) #31	ENSCHIG00000018528 #32	ENSCHIG00000026896	ATP11B (ENSCHIG00000006700) #33
Bovinae	ANCESTRAL SPECIES	6	ENSGT01070000253816.b	ENSGT00940000156699	ENSGT00940000156299 #7	ENSGT00390000015332 #8	ENSGT00940000155789 #10	ENSGT01030000234598.a.b #11	ENSGT00860000135711	ENSGT00940000153421.a.b #13	ENSGT00950000183039.B.b.a #15	ENSGT00730000111202 #16	ENSGT00940000155531.b #17	ENSGT00950000183039.B.a #18	ENSGT00940000156335 #19	ENSGT00390000013727.d #20	ENSGT01000000214413.b.a.a #21	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931 #26	ENSGT00390000013701 #28	ENSGT00390000015010 #27	ENSGT00950000183189.a.b.a #29	ENSGT00940000154384.g #30	ENSGT00940000160614 #31	ENSGT00940000156162.C.k #33	ENSGT00940000154552 #34	ENSGT00940000156941 #35	ENSGT00950000182899.C.a #36	ENSGT00940000159676 #37	ENSGT00940000153525.g.b.a.n
Bos	ANCESTRAL SPECIES	7	ENSGT00390000015332 #8	ENSGT00940000155789 #10	ENSGT01100000263481.n.a.a.a.b.a.b.b.b.a.a.a.a	ENSGT01100000263481.n.a.b.a.a.b.b.b.a	ENSGT00990000205077	ENSGT01030000234598.a.b #11	ENSGT00860000135711	ENSGT00940000153421.a.b #13	ENSGT00950000183039.B.b.a #15	ENSGT00730000111202 #16	ENSGT00940000155531.b #17	ENSGT00950000183039.B.a #18	ENSGT00940000156335 #19	ENSGT00390000013727.d #20	ENSGT01000000214413.b.a.a #21	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931.f #26	ENSGT00390000013701 #28	ENSGT00390000015010 #27	ENSGT00950000183189.a.b.a #29	ENSGT00940000154384.g #30	ENSGT00940000156162.C.k #33	ENSGT00940000154552 #34	ENSGT00940000156941 #35	ENSGT00950000182899.C.a #36	ENSGT00940000159676 #37	ENSGT00940000153525.g.b.a.n	ENSGT00940000161734
Bos_a	ANCESTRAL SPECIES	5	ENSGT00940000156299 #7	ENSGT00390000015332 #8	ENSGT00940000155789 #10	ENSGT01100000263481.n.a.a.a.b.a.b.b.b.a.a.a.a	ENSGT01100000263481.n.a.b.a.a.b.b.b.a	ENSGT00990000205077	ENSGT01030000234598.a.b #11	ENSGT00940000153421.a.b #13	ENSGT00950000183039.B.b.a #15	ENSGT00730000111202 #16	ENSGT00940000155531.b #17	ENSGT00950000183039.B.a #18	ENSGT00940000156335 #19	ENSGT00390000013727.d #20	ENSGT01000000214413.b.a.a #21	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931.f #26	ENSGT00390000013701 #28	ENSGT00390000015010 #27	ENSGT00950000183189.a.b.a #29	ENSGT00940000154384.g #30	ENSGT00940000156162.C.k #33	ENSGT00940000154552 #34	ENSGT00940000156941 #35	ENSGT00950000182899.C.a #36	ENSGT00940000159676 #37	ENSGT00940000153525.g.b.a.n	ENSGT00940000161734
Wild yak	MODERN SPECIES	495								KCNMB2 (ENSBMUG00000016601) #15	ZMAT3 (ENSBMUG00000016617) #16	PIK3CA (ENSBMUG00000016649) #17	ENSBMUG00000016675 #18	ENSBMUG00000016679	ZNF639 (ENSBMUG00000016692) #19	MFN1 (ENSBMUG00000016720) #20	GNB4 (ENSBMUG00000016733) #21	ACTL6A (ENSBMUG00000016746) #22	MRPL47 (ENSBMUG00000016765) #23	NDUFB5 (ENSBMUG00000016813) #24	USP13 (ENSBMUG00000016857) #25	PEX5L (ENSBMUG00000017113) #26	TTC14 (ENSBMUG00000017289) #28	CCDC39 (ENSBMUG00000017317) #27	FXR1 (ENSBMUG00000017444) #29	ENSBMUG00000017548 #30	ENSBMUG00000017572	ATP11B (ENSBMUG00000017711) #33	DCUN1D1 (ENSBMUG00000017739) #34	MCCC1 (ENSBMUG00000017803) #35	ENSBMUG00000017850 #36	MCF2L2 (ENSBMUG00000017904)	ENSBMUG00000017918
Domestic yak	MODERN SPECIES		ENSBGRG00000003486	NLGN1 (ENSBGRG00000003457) #10	ENSBGRG00000003453	ENSBGRG00000003433	NAALADL2 (ENSBGRG00000003389) #11	TBL1XR1 (ENSBGRG00000003307) #13	ENSBGRG00000003290	KCNMB2 (ENSBGRG00000003278) #15	ZMAT3 (ENSBGRG00000003264) #16	PIK3CA (ENSBGRG00000003231) #17	ENSBGRG00000003201 #18	ENSBGRG00000003193	ENSBGRG00000003185	MFN1 (ENSBGRG00000003142) #20	GNB4 (ENSBGRG00000003113) #21	ACTL6A (ENSBGRG00000003086) #22	MRPL47 (ENSBGRG00000003051) #23	NDUFB5 (ENSBGRG00000003013) #24	USP13 (ENSBGRG00000002861) #25	ENSBGRG00000002451 #26	TTC14 (ENSBGRG00000002327) #28	CCDC39 (ENSBGRG00000002146) #27	FXR1 (ENSBGRG00000001900) #29	DNAJC19 (ENSBGRG00000001844) #30	ATP11B (ENSBGRG00000001781) #33	DCUN1D1 (ENSBGRG00000001763) #34	MCCC1 (ENSBGRG00000001725) #35	ENSBGRG00000001692 #36	B3GNT5 (ENSBGRG00000001683) #37	ENSBGRG00000001679	MCF2L2 (ENSBGRG00000001502)
Bos_b	ANCESTRAL SPECIES	5	ENSGT00940000161884.d #9	ENSGT00940000155789 #10	ENSGT01100000263481.n.a.a.a.b.a.b.b.b.a.a.a.a	ENSGT01100000263481.n.a.b.a.a.b.b.b.a	ENSGT00990000205077	ENSGT01030000234598.a.b #11	ENSGT00860000135711	ENSGT00940000153421.a.b #13	ENSGT00950000183039.B.b.a #15	ENSGT00730000111202 #16	ENSGT00940000155531.b #17	ENSGT00950000183039.B.a #18	ENSGT00940000156335 #19	ENSGT00390000013727.d #20	ENSGT01000000214413.b.a.a #21	ENSGT00940000156305 #22	ENSGT00390000002837 #23	ENSGT00390000009980 #24	ENSGT00940000157401 #25	ENSGT00940000155931.f #26	ENSGT00390000013701 #28	ENSGT00390000015010 #27	ENSGT00950000183189.a.b.a #29	ENSGT00940000154384.g #30	ENSGT00940000156162.C.k #33	ENSGT00940000154552 #34	ENSGT00940000156941 #35	ENSGT00950000182899.C.a #36	ENSGT00940000159676 #37	ENSGT00940000153525.g.b.a.n	ENSGT00940000161734
Hybrid Bos Indicus	MODERN SPECIES		ENSBIXG00005016905	ENSBIXG00005016911	NAALADL2 (ENSBIXG00005002757) #11	TBL1XR1 (ENSBIXG00005002780) #13	ENSBIXG00005006866	ENSBIXG00005002798	KCNMB2 (ENSBIXG00005017216) #15	ZMAT3 (ENSBIXG00005017242) #16	ENSBIXG00005017249	PIK3CA (ENSBIXG00005017279) #17	KCNMB3 (ENSBIXG00005002817) #18	ZNF639 (ENSBIXG00005017422) #19	ENSBIXG00005017430	MFN1 (ENSBIXG00005007801) #20	GNB4 (ENSBIXG00005017563) #21	ACTL6A (ENSBIXG00005017648) #22	MRPL47 (ENSBIXG00005017737) #23	NDUFB5 (ENSBIXG00005017808) #24	ENSBIXG00005017824	USP13 (ENSBIXG00005017875) #25	PEX5L (ENSBIXG00005018250) #26	TTC14 (ENSBIXG00005018361) #28	CCDC39 (ENSBIXG00005018434) #27	ENSBIXG00005018457	FXR1 (ENSBIXG00005000056) #29	ENSBIXG00005003104 #30	ATP11B (ENSBIXG00005003151) #33	DCUN1D1 (ENSBIXG00005019545) #34	MCCC1 (ENSBIXG00005019762) #35	ENSBIXG00005019865 #36	B3GNT5 (ENSBIXG00005019925) #37
Cow	MODERN SPECIES		TBL1XR1 (ENSBTAG00000021910) #13	ENSBTAG00000048417	ENSBTAG00000052803	GTPBP6 (ENSBTAG00000054315)	PLCXD1 (ENSBTAG00000035144)	ENSBTAG00000050181	KCNMB2 (ENSBTAG00000011377) #15	ZMAT3 (ENSBTAG00000012463) #16	ENSBTAG00000054655	PIK3CA (ENSBTAG00000009232) #17	KCNMB3 (ENSBTAG00000009235) #18	ZNF639 (ENSBTAG00000037393) #19	ENSBTAG00000050978	MFN1 (ENSBTAG00000010485) #20	GNB4 (ENSBTAG00000002767) #21	ACTL6A (ENSBTAG00000002460) #22	MRPL47 (ENSBTAG00000002462) #23	NDUFB5 (ENSBTAG00000002463) #24	USP13 (ENSBTAG00000005946) #25	PEX5L (ENSBTAG00000013219) #26	TTC14 (ENSBTAG00000001968) #28	CCDC39 (ENSBTAG00000001969) #27	FXR1 (ENSBTAG00000016457) #29	DNAJC19 (ENSBTAG00000023513) #30	ATP11B (ENSBTAG00000000290) #33	DCUN1D1 (ENSBTAG00000012797) #34	MCCC1 (ENSBTAG00000006548) #35	LAMP3 (ENSBTAG00000006552) #36	B3GNT5 (ENSBTAG00000010397) #37	ENSBTAG00000032217	MCF2L2 (ENSBTAG00000010394)
American bison	MODERN SPECIES	3281									KCNMB2 (ENSBBBG00000016906) #15	ZMAT3 (ENSBBBG00000016883) #16	PIK3CA (ENSBBBG00000016857) #17	KCNMB3 (ENSBBBG00000016801) #18	ZNF639 (ENSBBBG00000016766) #19	MFN1 (ENSBBBG00000016746) #20	GNB4 (ENSBBBG00000000725) #21	ACTL6A (ENSBBBG00000004132) #22	MRPL47 (ENSBBBG00000016656) #23	NDUFB5 (ENSBBBG00000016629) #24	USP13 (ENSBBBG00000016615) #25	PEX5L (ENSBBBG00000016549) #26	TTC14 (ENSBBBG00000016091) #28	CCDC39 (ENSBBBG00000016047) #27	FXR1 (ENSBBBG00000016010) #29	ENSBBBG00000015808 #30	SOX2 (ENSBBBG00000015767) #31	ATP11B (ENSBBBG00000015744) #33	DCUN1D1 (ENSBBBG00000002643) #34	MCCC1 (ENSBBBG00000015686) #35	LAMP3 (ENSBBBG00000003901)	MCF2L2 (ENSBBBG00000003450)	B3GNT5 (ENSBBBG00000007365) #37
Siberian musk deer	MODERN SPECIES	139	SPATA16 (ENSMMSG00000003744) #8	ENSMMSG00000003725	ENSMMSG00000003711 #9	NLGN1 (ENSMMSG00000003692) #10	ENSMMSG00000003679	NAALADL2 (ENSMMSG00000003624) #11	TBL1XR1 (ENSMMSG00000003575) #13	KCNMB2 (ENSMMSG00000003557) #15	ENSMMSG00000003544	ZMAT3 (ENSMMSG00000003531) #16	PIK3CA (ENSMMSG00000003505) #17	KCNMB3 (ENSMMSG00000003476) #18	ZNF639 (ENSMMSG00000003462) #19	MFN1 (ENSMMSG00000003440) #20	GNB4 (ENSMMSG00000003419) #21	ACTL6A (ENSMMSG00000003389) #22	MRPL47 (ENSMMSG00000003361) #23	NDUFB5 (ENSMMSG00000003341) #24	USP13 (ENSMMSG00000003298) #25	PEX5L (ENSMMSG00000001803) #26	TTC14 (ENSMMSG00000001675) #28	CCDC39 (ENSMMSG00000001595) #27	ENSMMSG00000001203 #29	ENSMMSG00000001124 #30	ENSMMSG00000001107	SOX2 (ENSMMSG00000001102) #31	ATP11B (ENSMMSG00000000997) #33	DCUN1D1 (ENSMMSG00000000928) #34	MCCC1 (ENSMMSG00000000836) #35	ENSMMSG00000000791 #36	B3GNT5 (ENSMMSG00000000777) #37