Vertebrata	ANCESTRAL SPECIES																	ENSGT00940000156809.b #22
Gnathostomata	ANCESTRAL SPECIES																	ENSGT00940000156809.b #22
Euteleostomi	ANCESTRAL SPECIES	22	ENSGT00940000158391 #7	ENSGT00940000159609	ENSGT00940000157527 #8	ENSGT00940000157131.b #9	ENSGT00560000077278.b	ENSGT00940000153704.A #11	ENSGT00390000018696 #12	ENSGT00940000158728 #13	ENSGT00940000157045 #15	ENSGT00940000161037	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT01100000266357	ENSGT00910000144184 #24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000155985 #27	ENSGT00940000160242 #29	ENSGT00940000154107.b ##30	ENSGT00940000154995 #31	ENSGT00390000017863 #32	ENSGT00940000154337 #33	ENSGT00530000063528.A.b #34	ENSGT00940000156869 #36	ENSGT00940000157121	ENSGT00940000155660.b
Sarcopterygii	ANCESTRAL SPECIES		ENSGT00940000155488	ENSGT00940000158391 #7	ENSGT00940000157527 #8	ENSGT00940000157131.b #9	ENSGT00560000077278.b	ENSGT00940000153704.A #11	ENSGT00390000018696 #12	ENSGT00940000158728 #13	ENSGT00940000157045 #15	ENSGT00940000161037	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT01100000266357	ENSGT00910000144184 #24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000155985 #27	ENSGT00940000160242 #29	ENSGT00940000154107.b ##30	ENSGT00940000154107.a #30	ENSGT00940000154995 #31	ENSGT00390000017863 #32	ENSGT00940000154337 #33	ENSGT00530000063528.A.b #34	ENSGT00940000156869 #36	ENSGT00940000157121
Tetrapoda	ANCESTRAL SPECIES	7	ENSGT00940000155488	ENSGT00940000158391 #7	ENSGT00940000157527 #8	ENSGT00940000157131.b #9	ENSGT00560000077278.b	ENSGT00940000153704.A #11	ENSGT00390000018696 #12	ENSGT00940000158728 #13	ENSGT00940000157045 #15	ENSGT00940000161037	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT01100000266357	ENSGT00910000144184 #24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000155985 #27	ENSGT00940000160242 #29	ENSGT00940000154107.b ##30	ENSGT00940000154107.a #30	ENSGT00940000154995 #31	ENSGT00390000017863 #32	ENSGT00940000154337 #33	ENSGT00530000063528.A.b #34	ENSGT00940000156869 #36	ENSGT00390000008096.D ##37
Amniota	ANCESTRAL SPECIES	7	ENSGT00940000155488	ENSGT00940000158391 #7	ENSGT00940000157527 #8	ENSGT00940000157131.b #9	ENSGT00560000077278.b	ENSGT00940000153704.A #11	ENSGT00390000018696 #12	ENSGT00940000158728 #13	ENSGT00940000157045 #15	ENSGT00940000161037	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184.q.a ##24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000155985 #27	ENSGT00940000160242 #29	ENSGT00940000154107.a #30	ENSGT00940000154995 #31	ENSGT00390000017863 #32	ENSGT00940000154337 #33	ENSGT00530000063528.A.b #34	ENSGT00940000156869 #36	ENSGT00390000008096.D ##37	ENSGT00940000157121	ENSGT00940000155660.b
Mammalia	ANCESTRAL SPECIES	4	ENSGT00940000155488	ENSGT00940000158391 #7	ENSGT00940000157527 #8	ENSGT00940000157131.b #9	ENSGT00560000077278.b	ENSGT00940000153704.A #11	ENSGT00390000018696 #12	ENSGT00940000158728 #13	ENSGT00940000157045 #15	ENSGT00940000161037	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184.q.a ##24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000155985 #27	ENSGT00940000160242 #29	ENSGT00940000154107.a #30	ENSGT00940000154995 #31	ENSGT00390000017863 #32	ENSGT00940000154337 #33	ENSGT00530000063528.A.b #34	ENSGT00940000156869 #36	ENSGT00390000008096.D ##37	ENSGT00940000157121	ENSGT00940000155660.b
Theria	ANCESTRAL SPECIES		ENSGT00940000155488	ENSGT00940000158391 #7	ENSGT00940000157527 #8	ENSGT00940000157131.b #9	ENSGT00560000077278.b	ENSGT00940000153704.A #11	ENSGT00390000018696 #12	ENSGT00940000158728 #13	ENSGT00940000157045 #15	ENSGT00940000161037	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184.q.a ##24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000155985 #27	ENSGT00940000160242 #29	ENSGT00940000154107.a #30	ENSGT00940000154995 #31	ENSGT00390000017863 #32	ENSGT00940000154337 #33	ENSGT00530000063528.A.b #34	ENSGT00940000156869 #36	ENSGT00390000008096.D ##37	ENSGT00940000157121	ENSGT00940000155660.b
Eutheria	ANCESTRAL SPECIES	5	ENSGT00940000155488	ENSGT00940000158391 #7	ENSGT00940000157527 #8	ENSGT00940000157131.b #9	ENSGT00560000077278.b	ENSGT00940000153704.A #11	ENSGT00390000018696 #12	ENSGT00940000158728 #13	ENSGT00940000157045 #15	ENSGT00940000161037	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184.q.a ##24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000155985 #27	ENSGT00940000160242 #29	ENSGT00940000154107.a #30	ENSGT00940000154995 #31	ENSGT00390000017863 #32	ENSGT00940000154337 #33	ENSGT00530000063528.A.b #34	ENSGT00940000169676 #35	ENSGT00940000156869 #36	ENSGT00390000008096.A #37	ENSGT00940000157121
Boreoeutheria	ANCESTRAL SPECIES	2	ENSGT00940000157527 #8	ENSGT00970000197687	ENSGT00940000157131.b #9	ENSGT00560000077278.b	ENSGT00940000153704.A #11	ENSGT00390000018696 #12	ENSGT00940000158728 #13	ENSGT00940000157045 #15	ENSGT00940000161037	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00910000147406	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184.q.a ##24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000155985 #27	ENSGT00940000160242 #29	ENSGT00940000154107.a #30	ENSGT00940000154995 #31	ENSGT00390000017863 #32	ENSGT00940000154337 #33	ENSGT00530000063528.A.b #34	ENSGT00940000169676 #35	ENSGT00940000156869 #36	ENSGT00390000008096.A #37	ENSGT00940000157121
Euarchontoglires	ANCESTRAL SPECIES	2	ENSGT00940000157527 #8	ENSGT00970000197687	ENSGT00940000157131.b #9	ENSGT00560000077278.b	ENSGT00940000153704.A #11	ENSGT00390000018696 #12	ENSGT00940000158728 #13	ENSGT00940000157045 #15	ENSGT00940000161037	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00910000147406	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184.q.a.h ##24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000155985 #27	ENSGT00940000160242 #29	ENSGT00940000154107.a #30	ENSGT00940000154995 #31	ENSGT00390000017863 #32	ENSGT00940000154337 #33	ENSGT00530000063528.A.b #34	ENSGT00940000169676 #35	ENSGT00940000156869 #36	ENSGT00390000008096.A #37	ENSGT00940000157121
Primates	ANCESTRAL SPECIES	1	ENSGT00940000157527 #8	ENSGT00970000197687	ENSGT00940000157131.b #9	ENSGT00560000077278.b	ENSGT00940000153704.A #11	ENSGT00390000018696 #12	ENSGT00940000158728 #13	ENSGT00940000157045 #15	ENSGT00940000161037	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00910000147406	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184.q.a.h ##24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000155985 #27	ENSGT00940000160242 #29	ENSGT00940000154107.a #30	ENSGT00940000154995 #31	ENSGT00390000017863 #32	ENSGT00940000154337 #33	ENSGT00530000063528.A.b #34	ENSGT00940000169676 #35	ENSGT00940000156869 #36	ENSGT00390000008096.A #37	ENSGT00940000157121
Haplorrhini	ANCESTRAL SPECIES	5	ENSGT00940000158391 #7	ENSGT00940000157527 #8	ENSGT00940000157131.b #9	ENSGT00560000077278.b	ENSGT00940000153704.A #11	ENSGT00390000018696 #12	ENSGT00940000158728 #13	ENSGT00940000157045 #15	ENSGT00940000161037	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00910000147406	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184.q.a.h ##24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000155985 #27	ENSGT00940000160242 #29	ENSGT00940000154107.a #30	ENSGT00940000154995 #31	ENSGT00390000017863 #32	ENSGT00940000154337 #33	ENSGT00530000063528.A.b #34	ENSGT00940000169676 #35	ENSGT00940000156869 #36	ENSGT00390000008096.A #37	ENSGT00940000157121
Simiiformes	ANCESTRAL SPECIES	1	ENSGT00940000158391 #7	ENSGT00940000157527 #8	ENSGT00940000157131.b #9	ENSGT00560000077278.b	ENSGT00940000153704.A #11	ENSGT00390000018696 #12	ENSGT00940000158728 #13	ENSGT00940000157045 #15	ENSGT00940000161037	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00910000147406	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184.q.a.h ##24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000155985 #27	ENSGT00940000160242 #29	ENSGT00940000154107.a #30	ENSGT00940000154995 #31	ENSGT00390000017863 #32	ENSGT00940000154337 #33	ENSGT00530000063528.A.b #34	ENSGT00940000169676 #35	ENSGT00940000156869 #36	ENSGT00390000008096.A #37	ENSGT00940000157121
Catarrhini	ANCESTRAL SPECIES	2	ENSGT00940000157131.b #9	ENSGT00910000147287	ENSGT00560000077278.b	ENSGT00940000153704.A #11	ENSGT00390000018696 #12	ENSGT00940000158728 #13	ENSGT00940000157045 #15	ENSGT00940000161037	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000165752	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00910000147406	ENSGT00940000156809.b #22	ENSGT00910000147671	ENSGT00940000155168.a.b #23	ENSGT00910000144184.q.b.a #24	ENSGT00910000144184.q.a.h ##24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000155985 #27	ENSGT00940000160242 #29	ENSGT00940000154107.a #30	ENSGT00940000154995 #31	ENSGT00390000017863 #32	ENSGT00940000154337 #33	ENSGT00530000063528.A.b #34	ENSGT00940000169676 #35	ENSGT00940000156869 #36
Cercopithecidae	ANCESTRAL SPECIES	1	ENSGT00940000157131.b #9	ENSGT00910000147287	ENSGT00560000077278.b	ENSGT00940000153704.A #11	ENSGT00390000018696 #12	ENSGT00940000158728 #13	ENSGT00940000157045 #15	ENSGT00940000161037	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000165752	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00910000147406	ENSGT00940000156809.b #22	ENSGT00910000147671	ENSGT00940000155168.a.b #23	ENSGT00910000144184.q.a.h ##24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000155985 #27	ENSGT00940000160242 #29	ENSGT00940000154107.a #30	ENSGT00940000154995 #31	ENSGT00390000017863 #32	ENSGT00940000154337 #33	ENSGT00530000063528.A.b #34	ENSGT00940000169676 #35	ENSGT00940000156869 #36	ENSGT00390000012078.b.d
Cercopithecinae	ANCESTRAL SPECIES	5	ENSGT00940000157527 #8	ENSGT00940000157131.b #9	ENSGT00560000077278.b	ENSGT00940000153704.A #11	ENSGT00390000018696 #12	ENSGT00940000158728 #13	ENSGT00940000157045 #15	ENSGT00940000161037	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000165752	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00910000147406	ENSGT00940000156809.b #22	ENSGT00910000147671	ENSGT00940000155168.a.b #23	ENSGT00910000144184.q.a.h ##24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000155985 #27	ENSGT00940000160242 #29	ENSGT00940000154107.a #30	ENSGT00940000154995 #31	ENSGT00390000017863 #32	ENSGT00940000154337 #33	ENSGT00530000063528.A.b #34	ENSGT00940000169676 #35	ENSGT00940000156869 #36	ENSGT00390000012078.b.d
Vervet Monkey	MODERN SPECIES	6	GADL1 (ENSCSAG00000009641) #7	TGFBR2 (ENSCSAG00000009648) #8	RBMS3 (ENSCSAG00000009655) #9	ENSCSAG00000009660 #10	AZI2 (ENSCSAG00000009664) #11	ENSCSAG00000009671 #12	EOMES (ENSCSAG00000009676) #13	ENSCSAG00000018925 #14	SLC4A7 (ENSCSAG00000009685) #15	ENSCSAG00000009690 #16	LRRC3B (ENSCSAG00000018924) #17	OXSM (ENSCSAG00000009700) #18	NGLY1 (ENSCSAG00000009710) #19	TOP2B (ENSCSAG00000009724) #20	RARB (ENSCSAG00000009736) #21	THRB (ENSCSAG00000009750) #22	NR1D2 (ENSCSAG00000009757) #23	RPL15 (ENSCSAG00000009762) #24	NKIRAS1 (ENSCSAG00000009767) #25	UBE2E1 (ENSCSAG00000009770) #26	UBE2E2 (ENSCSAG00000009772) #27	ENSCSAG00000009780 #28	ZNF385D (ENSCSAG00000009784) #29	SGO1 (ENSCSAG00000009791) #30	KAT2B (ENSCSAG00000009803) #31	PP2D1 (ENSCSAG00000009816) #32	RAB5A (ENSCSAG00000009831) #33	EFHB (ENSCSAG00000009882) #34	ENSCSAG00000009907 #35	ENSCSAG00000009913 #36	SATB1 (ENSCSAG00000009921) #37
Cercopithecinae_a	ANCESTRAL SPECIES	5	ENSGT00940000157527 #8	ENSGT00940000157131.b #9	ENSGT00560000077278.b	ENSGT00940000153704.A #11	ENSGT00390000018696.m.a #12	ENSGT00940000158728 #13	ENSGT00940000157045 #15	ENSGT00940000161037	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000165752	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00910000147406	ENSGT00940000156809.b #22	ENSGT00910000147671	ENSGT00940000155168.a.b #23	ENSGT00910000144184.q.a.h ##24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000155985 #27	ENSGT00940000160242 #29	ENSGT00940000154107.a #30	ENSGT00940000154995 #31	ENSGT00390000017863 #32	ENSGT00940000154337 #33	ENSGT00530000063528.A.b #34	ENSGT00940000156869 #36	ENSGT00390000012078.b.d	ENSGT00390000008096.A #37
Macaca	ANCESTRAL SPECIES	5	ENSGT00940000158391 #7	ENSGT00940000157527 #8	ENSGT00940000157131.b #9	ENSGT00560000077278.b	ENSGT00940000153704.A #11	ENSGT00390000018696.m.a #12	ENSGT00940000158728 #13	ENSGT00940000157045 #15	ENSGT00940000161037	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000165752	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00940000156809.b #22	ENSGT00910000147671	ENSGT00940000155168.a.b #23	ENSGT00910000144184.q.a.h ##24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000155985 #27	ENSGT00940000160242 #29	ENSGT00940000154107.a #30	ENSGT00940000154995 #31	ENSGT00390000017863 #32	ENSGT00940000154337 #33	ENSGT00530000063528.A.b #34	ENSGT00940000156869 #36	ENSGT00390000008096.A #37	ENSGT00390000017004.a.b.m.b
Macaca_a	ANCESTRAL SPECIES	5	ENSGT00940000158391 #7	ENSGT00940000157527 #8	ENSGT00940000157131.b #9	ENSGT00560000077278.b	ENSGT00940000153704.A #11	ENSGT00390000018696.m.a #12	ENSGT00940000158728 #13	ENSGT00940000157045 #15	ENSGT00940000161037	ENSGT00940000157780 #17	ENSGT00940000166898.a.a.b.b.a.a.a.b.a.a.a.a	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184.q.a.h ##24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000155985 #27	ENSGT01050000245398.a.a	ENSGT01100000263508.A.d.e.b.b	ENSGT01100000263509.a.a.b.b.b.b.a.b.a.b	ENSGT00970000197082.b	ENSGT00940000160242 #29	ENSGT00940000154107.a #30	ENSGT00940000154995 #31	ENSGT00390000017863 #32	ENSGT00940000154337 #33	ENSGT00530000063528.A.b #34
Crab-eating macaque	MODERN SPECIES	11	TGFBR2 (ENSMFAG00000003965) #8	RBMS3 (ENSMFAG00000033300) #9	ZCWPW2 (ENSMFAG00000043324)	AZI2 (ENSMFAG00000032889) #11	ENSMFAG00000035374 #12	EOMES (ENSMFAG00000002012) #13	SLC4A7 (ENSMFAG00000000748) #15	NEK10 (ENSMFAG00000039437)	LRRC3B (ENSMFAG00000011678) #17	ENSMFAG00000051393	OXSM (ENSMFAG00000044675) #18	NGLY1 (ENSMFAG00000046244) #19	TOP2B (ENSMFAG00000043890) #20	RARB (ENSMFAG00000046169) #21	ENSMFAG00000063087	THRB (ENSMFAG00000008661) #22	NR1D2 (ENSMFAG00000038893) #23	ENSMFAG00000065062	ENSMFAG00000043886 ##24	NKIRAS1 (ENSMFAG00000002166) #25	ENSMFAG00000046106 #26	UBE2E2 (ENSMFAG00000039050) #27	ENSMFAG00000051228	ENSMFAG00000048916	ENSMFAG00000054636	ENSMFAG00000050082	ENSMFAG00000060465	ENSMFAG00000063489	ZNF385D (ENSMFAG00000032213) #29	ENSMFAG00000059783	ENSMFAG00000030000
Rhesus	MODERN SPECIES	11	AZI2 (ENSMMUG00000000056) #11	CMC1 (ENSMMUG00000000055) #12	EOMES (ENSMMUG00000064030) #13	SLC4A7 (ENSMMUG00000019327) #15	ENSMMUG00000050531	NEK10 (ENSMMUG00000019324)	ENSMMUG00000060127	LRRC3B (ENSMMUG00000060958) #17	ENSMMUG00000051809	ENSMMUG00000052172	ENSMMUG00000058701	OXSM (ENSMMUG00000014798) #18	NGLY1 (ENSMMUG00000014790) #19	TOP2B (ENSMMUG00000007371) #20	RARB (ENSMMUG00000007367) #21	THRB (ENSMMUG00000000067) #22	NR1D2 (ENSMMUG00000022240) #23	RPL15 (ENSMMUG00000006353) ##24	NKIRAS1 (ENSMMUG00000006352) #25	UBE2E1 (ENSMMUG00000006351) #26	UBE2E2 (ENSMMUG00000013069) #27	ENSMMUG00000058867	ENSMMUG00000058173	ENSMMUG00000059245	ENSMMUG00000063874	ENSMMUG00000061903	ENSMMUG00000051275	ZNF385D (ENSMMUG00000009667) #29	ENSMMUG00000063580	SGO1 (ENSMMUG00000020341) #30	KAT2B (ENSMMUG00000020342) #31
Pig-tailed macaque	MODERN SPECIES	151			ZCWPW2 (ENSMNEG00000030539)	AZI2 (ENSMNEG00000030575) #11	CMC1 (ENSMNEG00000031401) #12	EOMES (ENSMNEG00000033713) #13	SLC4A7 (ENSMNEG00000037643) #15	ENSMNEG00000044828	NEK10 (ENSMNEG00000009822)	LRRC3B (ENSMNEG00000038060) #17	OXSM (ENSMNEG00000004640) #18	NGLY1 (ENSMNEG00000030828) #19	ENSMNEG00000034775	TOP2B (ENSMNEG00000031938) #20	RARB (ENSMNEG00000042172) #21	THRB (ENSMNEG00000043806) #22	ENSMNEG00000029504	NR1D2 (ENSMNEG00000030479) #23	ENSMNEG00000031512 ##24	NKIRAS1 (ENSMNEG00000032999) #25	UBE2E1 (ENSMNEG00000039247) #26	UBE2E2 (ENSMNEG00000040296) #27	ZNF385D (ENSMNEG00000019616) #29	SGO1 (ENSMNEG00000039502) #30	KAT2B (ENSMNEG00000027704) #31	PP2D1 (ENSMNEG00000042144) #32	ENSMNEG00000039149 #33	EFHB (ENSMNEG00000032103) #34	ENSMNEG00000007485	ENSMNEG00000031642
Cercopithecinae_b	ANCESTRAL SPECIES		ENSGT00940000157527 #8	ENSGT00940000157131.b #9	ENSGT00560000077278.b	ENSGT00940000153704.A #11	ENSGT00390000018696.m.a #12	ENSGT00940000158728 #13	ENSGT00940000157045 #15	ENSGT00940000161037	ENSGT00910000147548	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00910000147406	ENSGT00940000156809.b #22	ENSGT00910000147671	ENSGT00940000155168.a.b #23	ENSGT00910000144184.q.a.h ##24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000155985 #27	ENSGT00940000160242 #29	ENSGT00940000154107.a #30	ENSGT00940000154995 #31	ENSGT00390000017863 #32	ENSGT00940000154337 #33	ENSGT00530000063528.A.b #34	ENSGT00940000156869 #36	ENSGT00390000012078.b.d	ENSGT00390000008096.A #37
Olive baboon	MODERN SPECIES	11	AZI2 (ENSPANG00000013154) #11	ENSPANG00000034967 #12	EOMES (ENSPANG00000011539) #13	ENSPANG00000048787	ENSPANG00000047404	SLC4A7 (ENSPANG00000003494) #15	NEK10 (ENSPANG00000009079)	ENSPANG00000040101	LRRC3B (ENSPANG00000004211) #17	ENSPANG00000040528	ENSPANG00000043116	OXSM (ENSPANG00000012595) #18	NGLY1 (ENSPANG00000012686) #19	TOP2B (ENSPANG00000010236) #20	RARB (ENSPANG00000023177) #21	THRB (ENSPANG00000008138) #22	NR1D2 (ENSPANG00000006662) #23	ENSPANG00000015926 ##24	NKIRAS1 (ENSPANG00000005603) #25	ENSPANG00000031728 #26	ENSPANG00000051194	UBE2E2 (ENSPANG00000019092) #27	ENSPANG00000037145	ZNF385D (ENSPANG00000009480) #29	ENSPANG00000051355	ENSPANG00000039359	ENSPANG00000044236	ENSPANG00000045561	SGO1 (ENSPANG00000005201) #30	KAT2B (ENSPANG00000015053) #31	PP2D1 (ENSPANG00000017678) #32
Cercopithecinae_d	ANCESTRAL SPECIES	16	ENSGT00940000157527 #8	ENSGT00940000157131.b #9	ENSGT00560000077278.b	ENSGT00940000153704.A #11	ENSGT00390000018696.m.a #12	ENSGT00940000158728 #13	ENSGT00940000157045 #15	ENSGT00940000161037	ENSGT00910000147548	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00910000147406	ENSGT00940000156809.b #22	ENSGT00910000147671	ENSGT00940000155168.a.b #23	ENSGT00910000144184.q.a.h ##24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000155985 #27	ENSGT00940000160242 #29	ENSGT00940000154107.a #30	ENSGT00940000154995 #31	ENSGT00390000017863 #32	ENSGT00940000154337 #33	ENSGT00530000063528.A.b #34	ENSGT00940000156869 #36	ENSGT00390000012078.b.d	ENSGT00390000008096.A #37
Sooty mangabey	MODERN SPECIES	538	AZI2 (ENSCATG00000031055) #11	ENSCATG00000037419 #12	EOMES (ENSCATG00000027541) #13	SLC4A7 (ENSCATG00000043961) #15	NEK10 (ENSCATG00000041855)	ENSCATG00000030816	ENSCATG00000031390	LRRC3B (ENSCATG00000019133) #17	OXSM (ENSCATG00000033195) #18	NGLY1 (ENSCATG00000037578) #19	ENSCATG00000031932	ENSCATG00000018986	TOP2B (ENSCATG00000029515) #20	RARB (ENSCATG00000040278) #21	ENSCATG00000032778	THRB (ENSCATG00000036345) #22	ENSCATG00000038592	NR1D2 (ENSCATG00000001356) #23	ENSCATG00000039291 ##24	NKIRAS1 (ENSCATG00000035403) #25	UBE2E1 (ENSCATG00000032614) #26	UBE2E2 (ENSCATG00000040534) #27	ENSCATG00000020620	ZNF385D (ENSCATG00000033080) #29	SGO1 (ENSCATG00000031797) #30	KAT2B (ENSCATG00000033089) #31	PP2D1 (ENSCATG00000030080) #32	ENSCATG00000033588 #33	EFHB (ENSCATG00000034471) #34	KCNH8 (ENSCATG00000031386) #36	ENSCATG00000040272
Drill	MODERN SPECIES	479										LRRC3B (ENSMLEG00000028039) #17	OXSM (ENSMLEG00000042570) #18	NGLY1 (ENSMLEG00000040018) #19	TOP2B (ENSMLEG00000034275) #20	RARB (ENSMLEG00000034832) #21	ENSMLEG00000031274	THRB (ENSMLEG00000031658) #22	NR1D2 (ENSMLEG00000031836) #23	RPL15 (ENSMLEG00000031741) #24	NKIRAS1 (ENSMLEG00000037070) #25	UBE2E1 (ENSMLEG00000038400) #26	UBE2E2 (ENSMLEG00000040260) #27	ZNF385D (ENSMLEG00000040187) #29
Rhinopithecus	ANCESTRAL SPECIES	421												ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184.q.b.a #24	ENSGT00910000144184.q.a.h.q.a ##24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000155985 #27	ENSGT00950000183105.A.m.a.q.b.d
Black snub-nosed monkey	MODERN SPECIES	1132										OXSM (ENSRBIG00000033144) #18	NGLY1 (ENSRBIG00000008998) #19	TOP2B (ENSRBIG00000023441) #20	RARB (ENSRBIG00000029659) #21	ENSRBIG00000023439	ENSRBIG00000038731	THRB (ENSRBIG00000012599) #22	NR1D2 (ENSRBIG00000032612) #23	ENSRBIG00000033415 ##24	NKIRAS1 (ENSRBIG00000027456) #25	UBE2E1 (ENSRBIG00000034290) #26	ENSRBIG00000031565 #27
Golden snub-nosed monkey	MODERN SPECIES	3175																THRB (ENSRROG00000028758) #22
Hominoidea	ANCESTRAL SPECIES	2	ENSGT00560000077278.b	ENSGT00940000153704.A #11	ENSGT00390000018696 #12	ENSGT00940000158728 #13	ENSGT00940000157045 #15	ENSGT00910000147705	ENSGT00940000165502	ENSGT00940000161037	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000165752	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00910000147406	ENSGT00940000156809.b #22	ENSGT00910000147671	ENSGT00940000155168.a.b #23	ENSGT00910000144184.q.b.a #24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000155985 #27	ENSGT00940000160242 #29	ENSGT00940000154107.a #30	ENSGT00940000154995 #31	ENSGT00390000017863 #32	ENSGT00940000154337 #33	ENSGT00530000063528.A.b #34	ENSGT00940000156869 #36	ENSGT00390000012078.b.d	ENSGT00390000008096.A #37
Gibbon	MODERN SPECIES	19	ZCWPW2 (ENSNLEG00000004113)	AZI2 (ENSNLEG00000004069) #11	CMC1 (ENSNLEG00000004066) #12	EOMES (ENSNLEG00000004050) #13	SLC4A7 (ENSNLEG00000003919) #15	NEK10 (ENSNLEG00000003860)	ENSNLEG00000029827	ENSNLEG00000028878	LRRC3B (ENSNLEG00000003858) #17	OXSM (ENSNLEG00000032728) #18	NGLY1 (ENSNLEG00000003792) #19	ENSNLEG00000033092	TOP2B (ENSNLEG00000003693) #20	RARB (ENSNLEG00000003654) #21	ENSNLEG00000030113	THRB (ENSNLEG00000003624) #22	ENSNLEG00000034786	NR1D2 (ENSNLEG00000003588) #23	ENSNLEG00000003580 ##24	NKIRAS1 (ENSNLEG00000031997) #25	UBE2E1 (ENSNLEG00000003557) #26	UBE2E2 (ENSNLEG00000003554) #27	ZNF385D (ENSNLEG00000003543) #29	ENSNLEG00000028275	SGO1 (ENSNLEG00000003467) #30	ENSNLEG00000003459 #31	PP2D1 (ENSNLEG00000003458) #32	RAB5A (ENSNLEG00000003434) #33	EFHB (ENSNLEG00000003393) #34	LPL (ENSNLEG00000003337)	INTS10 (ENSNLEG00000003259)
Hominidae	ANCESTRAL SPECIES	2	ENSGT00560000077278.b	ENSGT00940000153704.A #11	ENSGT00390000018696 #12	ENSGT00940000158728 #13	ENSGT00940000157045 #15	ENSGT00910000147705	ENSGT00940000165502	ENSGT00940000161037	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000165752	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00910000147406	ENSGT00940000156809.b #22	ENSGT00910000147671	ENSGT00940000155168.a.b #23	ENSGT00910000144184.q.b.a #24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000155985 #27	ENSGT00940000160242 #29	ENSGT00940000154107.a #30	ENSGT00940000154995 #31	ENSGT00390000017863 #32	ENSGT00940000154337 #33	ENSGT00530000063528.A.b #34	ENSGT00940000156869 #36	ENSGT00390000012078.b.d	ENSGT00390000008096.A #37
Orangutan	MODERN SPECIES	16	STT3B (ENSPPYG00000014047)	GADL1 (ENSPPYG00000014048) #7	TGFBR2 (ENSPPYG00000014049) #8	RBMS3 (ENSPPYG00000014050) #9	ZCWPW2 (ENSPPYG00000014052)	AZI2 (ENSPPYG00000014053) #11	ENSPPYG00000014054 #12	EOMES (ENSPPYG00000014055) #13	SLC4A7 (ENSPPYG00000014056) #15	NEK10 (ENSPPYG00000014057)	LRRC3B (ENSPPYG00000014058) #17	OXSM (ENSPPYG00000014059) #18	NGLY1 (ENSPPYG00000014060) #19	TOP2B (ENSPPYG00000014061) #20	RARB (ENSPPYG00000014062) #21	THRB (ENSPPYG00000014063) #22	NR1D2 (ENSPPYG00000014064) #23	RPL15 (ENSPPYG00000014065) ##24	NKIRAS1 (ENSPPYG00000014066) #25	ENSPPYG00000014067 #26	UBE2E2 (ENSPPYG00000014068) #27	ZNF385D (ENSPPYG00000014069) #29	SGO1 (ENSPPYG00000014071) #30	KAT2B (ENSPPYG00000014072) #31	PP2D1 (ENSPPYG00000014073) #32	RAB5A (ENSPPYG00000014074) #33	EFHB (ENSPPYG00000014075) #34	KCNH8 (ENSPPYG00000014076) #36	SATB1 (ENSPPYG00000014077) #37	TBC1D5 (ENSPPYG00000014078)	PLCL2 (ENSPPYG00000014079)
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	2	ENSGT00560000077278.b	ENSGT00940000153704.A #11	ENSGT00390000018696 #12	ENSGT00940000158728 #13	ENSGT00940000157045 #15	ENSGT00910000147705	ENSGT00940000165502.b	ENSGT00940000161037	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000165752	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00910000147406	ENSGT00940000156809.b #22	ENSGT00910000147671	ENSGT00940000155168.a.b #23	ENSGT00910000144184.q.b.a #24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000155985 #27	ENSGT00940000160242 #29	ENSGT00940000154107.a #30	ENSGT00940000154995 #31	ENSGT00390000017863 #32	ENSGT00940000154337 #33	ENSGT00530000063528.A.b #34	ENSGT00940000156869 #36	ENSGT00390000012078.b.d	ENSGT00390000008096.A #37
Gorilla	MODERN SPECIES	16	AZI2 (ENSGGOG00000022881) #11	CMC1 (ENSGGOG00000012406) #12	EOMES (ENSGGOG00000008358) #13	SLC4A7 (ENSGGOG00000011232) #15	ENSGGOG00000040940	ENSGGOG00000041783	NEK10 (ENSGGOG00000002819)	LRRC3B (ENSGGOG00000008964) #17	OXSM (ENSGGOG00000024796) #18	ENSGGOG00000041098	ENSGGOG00000040350	NGLY1 (ENSGGOG00000002754) #19	TOP2B (ENSGGOG00000028083) #20	ENSGGOG00000036807	RARB (ENSGGOG00000002331) #21	THRB (ENSGGOG00000007268) #22	ENSGGOG00000041627	NR1D2 (ENSGGOG00000003222) #23	RPL15 (ENSGGOG00000024274) ##24	NKIRAS1 (ENSGGOG00000013354) #25	UBE2E1 (ENSGGOG00000008393) #26	UBE2E2 (ENSGGOG00000040750) #27	ZNF385D (ENSGGOG00000001637) #29	SGO1 (ENSGGOG00000006380) #30	KAT2B (ENSGGOG00000016696) #31	PP2D1 (ENSGGOG00000012034) #32	RAB5A (ENSGGOG00000015981) #33	EFHB (ENSGGOG00000013587) #34	KCNH8 (ENSGGOG00000028470) #36	SATB1 (ENSGGOG00000001779) #37	ENSGGOG00000028241
Homo/Pan group	ANCESTRAL SPECIES	3	ENSGT00560000077278.b	ENSGT00940000153704.A #11	ENSGT00390000018696 #12	ENSGT00940000158728 #13	ENSGT00940000157045 #15	ENSGT00910000147705	ENSGT00940000165502.b	ENSGT00940000161037	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000165752	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00910000147406	ENSGT00940000156809.b #22	ENSGT00910000147671	ENSGT00940000155168.a.b #23	ENSGT00910000144184.q.b.a #24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000155985 #27	ENSGT00940000160242 #29	ENSGT00940000154107.a #30	ENSGT00940000154995 #31	ENSGT00390000017863 #32	ENSGT00940000154337 #33	ENSGT00530000063528.A.b #34	ENSGT00940000156869 #36	ENSGT00390000012078.b.d	ENSGT00390000008096.A #37
Pan	ANCESTRAL SPECIES	2	ENSGT00390000018696 #12	ENSGT00940000158728 #13	ENSGT00940000153593.c.b.e #14	ENSGT00940000157045 #15	ENSGT00910000147705	ENSGT00940000165502.b	ENSGT00940000161037	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00940000161697.e	ENSGT00390000006540 #19	ENSGT00940000165752	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00910000147406	ENSGT00940000156809.b #22	ENSGT00910000147671	ENSGT00940000155168.a.b #23	ENSGT00910000144184.q.b.a #24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000155985 #27	ENSGT00940000160242 #29	ENSGT00940000154107.a #30	ENSGT00940000154995 #31	ENSGT00390000017863 #32	ENSGT00940000154337 #33	ENSGT00530000063528.A.b #34	ENSGT00940000156869 #36	ENSGT00390000012078.b.d	ENSGT00390000008096.A #37
Bonobo	MODERN SPECIES	16	CMC1 (ENSPPAG00000040947) #12	EOMES (ENSPPAG00000034249) #13	ENSPPAG00000029590	SLC4A7 (ENSPPAG00000018316) #15	ENSPPAG00000042749	ENSPPAG00000027410	NEK10 (ENSPPAG00000034616)	LRRC3B (ENSPPAG00000023537) #17	OXSM (ENSPPAG00000032843) #18	ENSPPAG00000039839	NGLY1 (ENSPPAG00000043951) #19	ENSPPAG00000016776	TOP2B (ENSPPAG00000030594) #20	RARB (ENSPPAG00000038282) #21	ENSPPAG00000028082	THRB (ENSPPAG00000028507) #22	ENSPPAG00000024747	NR1D2 (ENSPPAG00000033627) #23	RPL15 (ENSPPAG00000032386) #24	NKIRAS1 (ENSPPAG00000034931) #25	UBE2E1 (ENSPPAG00000039295) #26	UBE2E2 (ENSPPAG00000030208) #27	ENSPPAG00000012676	ZNF385D (ENSPPAG00000039924) #29	ENSPPAG00000034965 #30	KAT2B (ENSPPAG00000040413) #31	PP2D1 (ENSPPAG00000037981) #32	RAB5A (ENSPPAG00000041763) #33	EFHB (ENSPPAG00000027704) #34	KCNH8 (ENSPPAG00000043183) #36	SATB1 (ENSPPAG00000024816) #37
Chimpanzee	MODERN SPECIES	16	EOMES (ENSPTRG00000014705) #13	ENSPTRG00000047583	ENSPTRG00000044197	ENSPTRG00000039223 #14	SLC4A7 (ENSPTRG00000014704) #15	ENSPTRG00000048639	NEK10 (ENSPTRG00000014703)	LRRC3B (ENSPTRG00000014702) #17	OXSM (ENSPTRG00000014701) #18	ENSPTRG00000047793	NGLY1 (ENSPTRG00000014700) #19	ENSPTRG00000043412	TOP2B (ENSPTRG00000014699) #20	ENSPTRG00000052750	RARB (ENSPTRG00000014698) #21	THRB (ENSPTRG00000014697) #22	ENSPTRG00000050678	NR1D2 (ENSPTRG00000014696) #23	RPL15 (ENSPTRG00000014695) #24	NKIRAS1 (ENSPTRG00000014694) #25	UBE2E1 (ENSPTRG00000014693) #26	UBE2E2 (ENSPTRG00000049783) #27	ENSPTRG00000048984	ZNF385D (ENSPTRG00000014688) #29	SGO1 (ENSPTRG00000014686) #30	KAT2B (ENSPTRG00000014685) #31	PP2D1 (ENSPTRG00000014683) #32	RAB5A (ENSPTRG00000014682) #33	EFHB (ENSPTRG00000014681) #34	KCNH8 (ENSPTRG00000014679) #36	ENSPTRG00000050714
Human	MODERN SPECIES	15	STT3B (ENSG00000163527)	GADL1 (ENSG00000144644) #7	TGFBR2 (ENSG00000163513) #8	RBMS3 (ENSG00000144642) #9	ZCWPW2 (ENSG00000206559)	AZI2 (ENSG00000163512) #11	CMC1 (ENSG00000187118) #12	EOMES (ENSG00000163508) #13	SLC4A7 (ENSG00000033867) #15	NEK10 (ENSG00000163491)	LRRC3B (ENSG00000179796) #17	OXSM (ENSG00000151093) #18	NGLY1 (ENSG00000151092) #19	TOP2B (ENSG00000077097) #20	RARB (ENSG00000077092) #21	THRB (ENSG00000151090) #22	NR1D2 (ENSG00000174738) #23	RPL15 (ENSG00000174748) #24	NKIRAS1 (ENSG00000197885) #25	UBE2E1 (ENSG00000170142) #26	UBE2E2 (ENSG00000182247) #27	ZNF385D (ENSG00000151789) #29	SGO1 (ENSG00000129810) #30	KAT2B (ENSG00000114166) #31	PP2D1 (ENSG00000183977) #32	RAB5A (ENSG00000144566) #33	EFHB (ENSG00000163576) #34	KCNH8 (ENSG00000183960) #36	SATB1 (ENSG00000182568) #37	TBC1D5 (ENSG00000131374)	PLCL2 (ENSG00000154822)
Platyrrhini	ANCESTRAL SPECIES	22	ENSGT00940000158391 #7	ENSGT00940000157527 #8	ENSGT00940000157131.b #9	ENSGT00560000077278.b	ENSGT00940000153704.A #11	ENSGT00390000018696 #12	ENSGT00950000183017.b.a.e.b	ENSGT00940000158728 #13	ENSGT00940000157045 #15	ENSGT00940000161037	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184.q.a.h ##24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000155985 #27	ENSGT00940000160242 #29	ENSGT00940000154107.a #30	ENSGT00940000154995 #31	ENSGT00390000017863 #32	ENSGT00940000154337 #33	ENSGT00530000063528.A.b #34	ENSGT00940000156869 #36	ENSGT00390000008096.A #37	ENSGT00940000154295.y.a.b	ENSGT00390000017004.a.b.j.a
Cebidae	ANCESTRAL SPECIES	22	ENSGT00940000158391 #7	ENSGT00940000157527 #8	ENSGT00940000157131.b #9	ENSGT00560000077278.b	ENSGT00940000153704.A #11	ENSGT00390000018696 #12	ENSGT00950000183017.b.a.e.b	ENSGT00940000158728 #13	ENSGT00940000157045 #15	ENSGT00940000161037	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184.q.a.h ##24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000155985 #27	ENSGT00940000160242 #29	ENSGT00940000154107.a #30	ENSGT00940000154995 #31	ENSGT00390000017863 #32	ENSGT00940000154337 #33	ENSGT00530000063528.A.b #34	ENSGT00940000156869 #36	ENSGT00390000008096.A #37	ENSGT00940000154295.y.a.b	ENSGT00390000017004.a.b.j.a
Cebidae_a	ANCESTRAL SPECIES	12	ENSGT00940000158391 #7	ENSGT00940000157527 #8	ENSGT00940000157131.b #9	ENSGT00560000077278.b	ENSGT00940000153704.A #11	ENSGT00390000018696 #12	ENSGT00950000183017.b.a.e.b	ENSGT00940000158728 #13	ENSGT00940000157045 #15	ENSGT00940000161037	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184.q.a.g.b ##24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000155985 #27	ENSGT00940000160242 #29	ENSGT00940000154107.a #30	ENSGT00940000154995 #31	ENSGT00390000017863 #32	ENSGT00940000154337 #33	ENSGT00530000063528.A.b #34	ENSGT00940000156869 #36	ENSGT00390000008096.A #37	ENSGT00940000154295.y.a.b	ENSGT00390000017004.a.b.j.a
Capuchin	MODERN SPECIES	351										OXSM (ENSCCAG00000025740) #18	NGLY1 (ENSCCAG00000035055) #19	ENSCCAG00000029952 ##24	TOP2B (ENSCCAG00000029701) #20	RARB (ENSCCAG00000037711) #21	ENSCCAG00000002701	THRB (ENSCCAG00000017108) #22	ENSCCAG00000028869 #23
Bolivian squirrel monkey	MODERN SPECIES	122	TGFBR2 (ENSSBOG00000033543) #8	RBMS3 (ENSSBOG00000020232) #9	ZCWPW2 (ENSSBOG00000022412)	ENSSBOG00000034055 #11	CMC1 (ENSSBOG00000030774) #12	ENSSBOG00000023283	EOMES (ENSSBOG00000028970) #13	SLC4A7 (ENSSBOG00000027820) #15	NEK10 (ENSSBOG00000030568)	LRRC3B (ENSSBOG00000007633) #17	OXSM (ENSSBOG00000021774) #18	NGLY1 (ENSSBOG00000019504) #19	TOP2B (ENSSBOG00000019988) #20	RARB (ENSSBOG00000030974) #21	ENSSBOG00000014589	THRB (ENSSBOG00000031465) #22	NR1D2 (ENSSBOG00000035225) #23	ENSSBOG00000030880 ##24	ENSSBOG00000028575	CASZ1 (ENSSBOG00000026409)	C1orf127 (ENSSBOG00000015217)	ENSSBOG00000028814	MASP2 (ENSSBOG00000023642)	ENSSBOG00000013317	EXOSC10 (ENSSBOG00000020768)	ANGPTL7 (ENSSBOG00000030206)	MTOR (ENSSBOG00000034535)	UBIAD1 (ENSSBOG00000030796)	DISP3 (ENSSBOG00000026133)	FBXO2 (ENSSBOG00000024844)	FBXO44 (ENSSBOG00000025444)
Marmoset	MODERN SPECIES	8	ENSCJAG00000004272 #12	EOMES (ENSCJAG00000004263) #13	SLC4A7 (ENSCJAG00000004141) #15	ENSCJAG00000079217	NEK10 (ENSCJAG00000004112)	ENSCJAG00000077804	LRRC3B (ENSCJAG00000071256) #17	ENSCJAG00000070184	OXSM (ENSCJAG00000004087) #18	NGLY1 (ENSCJAG00000004039) #19	ENSCJAG00000075768	TOP2B (ENSCJAG00000003963) #20	ENSCJAG00000081460	RARB (ENSCJAG00000003911) #21	ENSCJAG00000080592	THRB (ENSCJAG00000003887) #22	NR1D2 (ENSCJAG00000003844) #23	ENSCJAG00000043224 ##24	NKIRAS1 (ENSCJAG00000003797) #25	ENSCJAG00000082801	UBE2E1 (ENSCJAG00000003784) #26	ENSCJAG00000039905 #27	ENSCJAG00000084939	ZNF385D (ENSCJAG00000003774) #29	ENSCJAG00000072936	ENSCJAG00000083714	ENSCJAG00000081001	SGO1 (ENSCJAG00000003760) #30	KAT2B (ENSCJAG00000003744) #31	ENSCJAG00000086623	PP2D1 (ENSCJAG00000003735) #32
Mas night monkey	MODERN SPECIES	1061	ENSANAG00000029841	RBMS3 (ENSANAG00000021899) #9	ENSANAG00000019465	ZCWPW2 (ENSANAG00000026346)	AZI2 (ENSANAG00000032294) #11	CMC1 (ENSANAG00000033017) #12	ENSANAG00000028605	EOMES (ENSANAG00000033599) #13	SLC4A7 (ENSANAG00000033803) #15	NEK10 (ENSANAG00000020680)	LRRC3B (ENSANAG00000019390) #17	OXSM (ENSANAG00000031063) #18	NGLY1 (ENSANAG00000021060) #19	TOP2B (ENSANAG00000027435) #20	RARB (ENSANAG00000036254) #21	THRB (ENSANAG00000034995) #22	NR1D2 (ENSANAG00000023537) #23	ENSANAG00000006330	ENSANAG00000034359	ENSANAG00000031597	TBL1XR1 (ENSANAG00000029088)	ENSANAG00000020135
Tarsier	MODERN SPECIES	2200																THRB (ENSTSYG00000008478) #22
Strepsirrhini	ANCESTRAL SPECIES	1	ENSGT00940000158391 #7	ENSGT00940000157527 #8	ENSGT00970000197687	ENSGT00940000157131.b #9	ENSGT00560000077278.b	ENSGT00940000153704.A #11	ENSGT00390000018696 #12	ENSGT00940000158728 #13	ENSGT00940000157045 #15	ENSGT00940000161037	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184.q.a.h ##24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000155985 #27	ENSGT00940000160242 #29	ENSGT00940000154107.a #30	ENSGT00940000154995 #31	ENSGT00390000017863 #32	ENSGT00940000154337 #33	ENSGT00530000063528.A.b #34	ENSGT00940000156869 #36	ENSGT00390000008096.A #37	ENSGT00390000008096.E.b ##37	ENSGT00390000008096.E.a ##37
Lemuriformes	ANCESTRAL SPECIES	30	ENSGT00940000158391 #7	ENSGT00940000157527 #8	ENSGT00970000197687	ENSGT00940000157131.b #9	ENSGT00560000077278.b	ENSGT00940000153704.A #11	ENSGT00390000018696 #12	ENSGT00940000158728 #13	ENSGT00940000157045 #15	ENSGT00940000161037	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184.q.a.h ##24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000155985 #27	ENSGT00940000160242 #29	ENSGT00940000154107.a #30	ENSGT00940000154995 #31	ENSGT00390000017863 #32	ENSGT00940000154337 #33	ENSGT00530000063528.A.b #34	ENSGT00940000156869 #36	ENSGT00390000008096.A #37	ENSGT00390000008096.E.b ##37	ENSGT00390000008096.E.a ##37
Lemuriformes_a	ANCESTRAL SPECIES	123	ENSGT00940000158391 #7	ENSGT00940000157527 #8	ENSGT00970000197687	ENSGT00940000157131.b #9	ENSGT00560000077278.b	ENSGT00940000153704.A #11	ENSGT00390000018696 #12	ENSGT00940000158728 #13	ENSGT00940000157045 #15	ENSGT00940000161037	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184.q.a.g.a ##24	ENSGT00910000144184.q.a.h ##24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000155985 #27
Greater bamboo lemur	MODERN SPECIES	865																THRB (ENSPSMG00000022133) #22	ENSPSMG00000022161 #23
Coquerels sifaka	MODERN SPECIES	310	ENSPCOG00000016214	RBMS3 (ENSPCOG00000017136) #9	ZCWPW2 (ENSPCOG00000021474)	ENSPCOG00000003822	AZI2 (ENSPCOG00000017001) #11	CMC1 (ENSPCOG00000011478) #12	EOMES (ENSPCOG00000013637) #13	SLC4A7 (ENSPCOG00000026504) #15	NEK10 (ENSPCOG00000016215)	LRRC3B (ENSPCOG00000026429) #17	ENSPCOG00000021614	OXSM (ENSPCOG00000019483) #18	NGLY1 (ENSPCOG00000009457) #19	TOP2B (ENSPCOG00000009804) #20	RARB (ENSPCOG00000023376) #21	THRB (ENSPCOG00000028079) #22	NR1D2 (ENSPCOG00000021696) #23	ENSPCOG00000018537 ##24	NKIRAS1 (ENSPCOG00000010973) #25	UBE2E1 (ENSPCOG00000023739) #26	UBE2E2 (ENSPCOG00000015930) #27	ENSPCOG00000008310
Mouse lemur	MODERN SPECIES		ENSMICG00000049121	TGFBR2 (ENSMICG00000049062) #8	RBMS3 (ENSMICG00000049249) #9	ZCWPW2 (ENSMICG00000049581)	AZI2 (ENSMICG00000049570) #11	CMC1 (ENSMICG00000049258) #12	EOMES (ENSMICG00000049432) #13	SLC4A7 (ENSMICG00000048954) #15	NEK10 (ENSMICG00000048883)	ENSMICG00000048937	LRRC3B (ENSMICG00000049187) #17	OXSM (ENSMICG00000049367) #18	NGLY1 (ENSMICG00000049359) #19	TOP2B (ENSMICG00000049035) #20	RARB (ENSMICG00000049235) #21	THRB (ENSMICG00000048917) #22	NR1D2 (ENSMICG00000049571) #23	ENSMICG00000049398 ##24	NKIRAS1 (ENSMICG00000049057) #25	UBE2E1 (ENSMICG00000048911) #26	UBE2E2 (ENSMICG00000049547) #27	ZNF385D (ENSMICG00000049193) #29	SGO1 (ENSMICG00000049414) #30	KAT2B (ENSMICG00000049426) #31	PP2D1 (ENSMICG00000048941) #32	RAB5A (ENSMICG00000049130) #33	EFHB (ENSMICG00000049240) #34	ENSMICG00000049539	KCNH8 (ENSMICG00000049082) #36	ENSMICG00000049466	ENSMICG00000049113 ##37
Bushbaby	MODERN SPECIES	117	ENSOGAG00000032745	ENSOGAG00000005896 #11	CMC1 (ENSOGAG00000025882) #12	EOMES (ENSOGAG00000030966) #13	SLC4A7 (ENSOGAG00000014844) #15	ENSOGAG00000034481	NEK10 (ENSOGAG00000014838)	LRRC3B (ENSOGAG00000007581) #17	ENSOGAG00000025312	OXSM (ENSOGAG00000002395) #18	NGLY1 (ENSOGAG00000002394) #19	TOP2B (ENSOGAG00000002387) #20	RARB (ENSOGAG00000002385) #21	ENSOGAG00000028311	ENSOGAG00000032135	THRB (ENSOGAG00000002010) #22	NR1D2 (ENSOGAG00000010721) #23	RPL15 (ENSOGAG00000013056) #24	NKIRAS1 (ENSOGAG00000007528) #25	UBE2E1 (ENSOGAG00000007527) #26	ENSOGAG00000029099	UBE2E2 (ENSOGAG00000008828) #27	ENSOGAG00000025686	ENSOGAG00000031261	ZNF385D (ENSOGAG00000015958) #29	ENSOGAG00000029509	SGO1 (ENSOGAG00000016786) #30	KAT2B (ENSOGAG00000016781) #31	PP2D1 (ENSOGAG00000007917) #32	RAB5A (ENSOGAG00000003948) #33	EFHB (ENSOGAG00000003944) #34
Euarchontoglires_A	ANCESTRAL SPECIES	2	ENSGT00940000155488	ENSGT00940000158391 #7	ENSGT00940000157527 #8	ENSGT00940000157131.b #9	ENSGT00560000077278.b	ENSGT00940000153704.A #11	ENSGT00390000018696 #12	ENSGT00940000158728 #13	ENSGT00940000157045 #15	ENSGT00940000161037	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184.q.a.h ##24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000155985 #27	ENSGT00940000160242 #29	ENSGT00940000154107.a #30	ENSGT00940000154995 #31	ENSGT00390000017863 #32	ENSGT00940000154337 #33	ENSGT00530000063528.A.b #34	ENSGT00940000156869 #36	ENSGT00390000008096.A #37	ENSGT00940000157121	ENSGT00940000155660.b
Tree shrew	MODERN SPECIES	3691																THRB (ENSTBEG00000004123) #22	NR1D2 (ENSTBEG00000003174) #23	UBE2E1 (ENSTBEG00000002490) #26
Glires	ANCESTRAL SPECIES	2	ENSGT00940000155488	ENSGT00940000158391 #7	ENSGT00940000157527 #8	ENSGT00940000157131.b #9	ENSGT00560000077278.b	ENSGT00940000153704.A #11	ENSGT00390000018696 #12	ENSGT00940000158728 #13	ENSGT00940000157045 #15	ENSGT00940000161037	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184.q.a.h ##24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000155985 #27	ENSGT00940000160242 #29	ENSGT00940000154107.a #30	ENSGT00940000154995 #31	ENSGT00390000017863 #32	ENSGT00940000154337 #33	ENSGT00530000063528.A.b #34	ENSGT00940000156869 #36	ENSGT00390000008096.A #37	ENSGT00940000157121	ENSGT00940000155660.b
Lagomorpha	ANCESTRAL SPECIES	6	ENSGT00940000155488	ENSGT00940000158391 #7	ENSGT00940000157527 #8	ENSGT00940000157131.b #9	ENSGT00560000077278.b	ENSGT00940000153704.A #11	ENSGT00390000018696 #12	ENSGT00940000158728 #13	ENSGT00940000157045 #15	ENSGT00940000161037	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184.q.a.g.a ##24	ENSGT00910000144184.q.b.b.b.b ##24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000155985 #27	ENSGT00940000160242 #29	ENSGT00940000154107.a #30	ENSGT00940000154995 #31	ENSGT00390000017863 #32	ENSGT00940000154337 #33	ENSGT00530000063528.A.b #34	ENSGT00940000156869 #36	ENSGT00390000008096.A #37	ENSGT00940000157121
Rabbit	MODERN SPECIES	5	ENSOCUG00000036953	ZCWPW2 (ENSOCUG00000017720)	ENSOCUG00000014956 #11	CMC1 (ENSOCUG00000012793) #12	EOMES (ENSOCUG00000000451) #13	ENSOCUG00000004133	SLC4A7 (ENSOCUG00000013596) #15	NEK10 (ENSOCUG00000007846)	ENSOCUG00000029906	LRRC3B (ENSOCUG00000015216) #17	OXSM (ENSOCUG00000015384) #18	NGLY1 (ENSOCUG00000015362) #19	ENSOCUG00000027075	TOP2B (ENSOCUG00000000717) #20	RARB (ENSOCUG00000000714) #21	THRB (ENSOCUG00000004532) #22	NR1D2 (ENSOCUG00000009329) #23	ENSOCUG00000010961 ##24	NKIRAS1 (ENSOCUG00000002483) #25	ENSOCUG00000006026 #26	ENSOCUG00000039156 #27	ENSOCUG00000031633	ZNF385D (ENSOCUG00000029070) #29	ENSOCUG00000033619	SGO1 (ENSOCUG00000006050) #30	ENSOCUG00000006039 #31	PP2D1 (ENSOCUG00000017225) #32	RAB5A (ENSOCUG00000012200) #33	EFHB (ENSOCUG00000013712) #34	ENSOCUG00000032896	ENSOCUG00000000698
Pika	MODERN SPECIES	3288																THRB (ENSOPRG00000010854) #22	NR1D2 (ENSOPRG00000010841) #23	ENSOPRG00000010828 ##24	ENSOPRG00000010821 #26
Rodentia	ANCESTRAL SPECIES	2	ENSGT00940000155488	ENSGT00940000158391 #7	ENSGT00940000157527 #8	ENSGT00940000157131.b #9	ENSGT00560000077278.b	ENSGT00940000153704.A #11	ENSGT00390000018696 #12	ENSGT00940000158728 #13	ENSGT00940000157045 #15	ENSGT00940000161037	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184.q.a.h ##24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000155985 #27	ENSGT00940000160242 #29	ENSGT00940000154107.a #30	ENSGT00940000154995 #31	ENSGT00390000017863 #32	ENSGT00940000154337 #33	ENSGT00530000063528.A.b #34	ENSGT00940000156869 #36	ENSGT00390000008096.A #37	ENSGT00940000157121	ENSGT00940000155660.b
Rodentia_B	ANCESTRAL SPECIES	26									ENSGT00940000157045 #15	ENSGT00940000161037	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184.q.a.h ##24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000155985 #27	ENSGT00940000160242 #29	ENSGT00940000154107.a #30	ENSGT00940000154995 #31	ENSGT00390000017863 #32	ENSGT00940000154337 #33	ENSGT00530000063528.A.b #34	ENSGT00940000156869 #36	ENSGT00390000008096.A #37	ENSGT00940000157121	ENSGT00940000155660.b
Kangaroo rat	MODERN SPECIES	331	Dennd6a (ENSDORG00000008820)	Arf4 (ENSDORG00000004312)	Pde12 (ENSDORG00000004313)	ENSDORG00000024834	ENSDORG00000007012	ENSDORG00000023137	ENSDORG00000009931	Asb14 (ENSDORG00000010041)	Slc4a7 (ENSDORG00000005735) #15	Nek10 (ENSDORG00000007870)	Lrrc3b (ENSDORG00000007554) #17	Oxsm (ENSDORG00000010198) #18	Ngly1 (ENSDORG00000010195) #19	Top2b (ENSDORG00000007009) #20	Rarb (ENSDORG00000028711) #21	Thrb (ENSDORG00000004966) #22	Nr1d2 (ENSDORG00000015232) #23	Rpl15 (ENSDORG00000006060) ##24	Nkiras1 (ENSDORG00000006061) #25	Ube2e1 (ENSDORG00000024426) #26	Ube2e2 (ENSDORG00000015441) #27	ENSDORG00000028521 #27	ENSDORG00000014751 #29
Myomorpha	ANCESTRAL SPECIES	49									ENSGT00940000157045 #15	ENSGT00940000161037	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184.q.a.h ##24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000155985 #27	ENSGT00940000160242 #29	ENSGT00940000154107.a #30	ENSGT00940000154995 #31	ENSGT00390000017863 #32	ENSGT00940000154337 #33	ENSGT00530000063528.A.b #34	ENSGT00940000156869 #36	ENSGT00390000008096.A #37	ENSGT00940000157121	ENSGT00940000155660.b
Lesser Egyptian jerboa	MODERN SPECIES	82	ENSJJAG00000005889	Pbrm1 (ENSJJAG00000019284)	Gnl3 (ENSJJAG00000021993)	Glt8d1 (ENSJJAG00000021166)	Spcs1 (ENSJJAG00000009161)	ENSJJAG00000012316	Itih1 (ENSJJAG00000018511)	Itih3 (ENSJJAG00000001642)	ENSJJAG00000009920	Lrrc3b (ENSJJAG00000010278) #17	ENSJJAG00000010990	Oxsm (ENSJJAG00000012817) #18	Ngly1 (ENSJJAG00000000939) #19	Top2b (ENSJJAG00000005440) #20	Rarb (ENSJJAG00000000743) #21	Thrb (ENSJJAG00000006766) #22	Nr1d2 (ENSJJAG00000013005) #23	Rpl15 (ENSJJAG00000014445) ##24	Nkiras1 (ENSJJAG00000014668) #25	ENSJJAG00000020028 #26	ENSJJAG00000010861	Ube2e2 (ENSJJAG00000005882) #27	Tasor (ENSJJAG00000011951)	Arhgef3 (ENSJJAG00000018063)	Il17rd (ENSJJAG00000019975)	Hesx1 (ENSJJAG00000014902)	Appl1 (ENSJJAG00000017551)	ENSJJAG00000022569	Asb14 (ENSJJAG00000000382)	Dnah12 (ENSJJAG00000012772)	ENSJJAG00000015636
Muroidea	ANCESTRAL SPECIES	55									ENSGT00940000157045 #15	ENSGT00940000161037	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184.q.a.h ##24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000155985 #27	ENSGT00940000160242 #29	ENSGT00940000154107.a #30	ENSGT00940000154995 #31	ENSGT00390000017863 #32	ENSGT00940000154337 #33	ENSGT00530000063528.A.b #34	ENSGT00940000156869 #36	ENSGT00390000008096.A #37	ENSGT00940000157121	ENSGT00940000155660.b
Upper Galilee mountains blind mole rat	MODERN SPECIES	831								ENSNGAG00000023923	Slc4a7 (ENSNGAG00000014343) #15	Nek10 (ENSNGAG00000023750)	Lrrc3b (ENSNGAG00000010750) #17	Oxsm (ENSNGAG00000023082) #18	Ngly1 (ENSNGAG00000008324) #19	Top2b (ENSNGAG00000022516) #20	Rarb (ENSNGAG00000003321) #21	Thrb (ENSNGAG00000023737) #22	ENSNGAG00000012538 #23	ENSNGAG00000022311 #23	ENSNGAG00000011612 #24	Nkiras1 (ENSNGAG00000022329) #25	Ube2e1 (ENSNGAG00000021026) #26	Ube2e2 (ENSNGAG00000023383) #27	ENSNGAG00000011903	ENSNGAG00000011260 #29	ENSNGAG00000021639 #30	Kat2b (ENSNGAG00000022426) #31	ENSNGAG00000009769 #32	Rab5a (ENSNGAG00000021245) #33	Efhb (ENSNGAG00000013629) #34
Muroidea_A	ANCESTRAL SPECIES	32	ENSGT00940000164126	ENSGT00390000007318	ENSGT00390000002873.h	ENSGT00940000157279	ENSGT00510000046608.B	ENSGT01090000260018.A.a.a.a.a.b.b	ENSGT01090000260018.A.a.a.a.a.b.a.f	ENSGT01090000260018.A.a.a.a.b.a	ENSGT00940000157045 #15	ENSGT00940000161037	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184.q.a.h ##24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000155985 #27	ENSGT00940000160242 #29
Murinae	ANCESTRAL SPECIES	26	ENSGT00940000164126	ENSGT00390000007318	ENSGT00390000002873.h	ENSGT00940000157279	ENSGT00510000046608.B	ENSGT01090000260018.A.a.a.a.a.b.b	ENSGT01090000260018.A.a.a.a.a.b.a.f	ENSGT01090000260018.A.a.a.a.b.a	ENSGT00940000157045 #15	ENSGT00940000161037	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184.q.a.h ##24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000155985 #27	ENSGT00940000160242 #29	ENSGT00940000157901	ENSGT00390000005163	ENSGT01100000263497.C	ENSGT00390000004313	ENSGT00940000156775	ENSGT00940000159813	ENSGT00940000158879	ENSGT00390000015361	ENSGT00530000063727.A
Mus	ANCESTRAL SPECIES	8	ENSGT00940000164126	ENSGT00390000007318	ENSGT00390000002873.h	ENSGT00940000157279	ENSGT00510000046608.B	ENSGT01090000260018.A.a.a.a.a.b.b	ENSGT01090000260018.A.a.a.a.a.b.a.f	ENSGT01090000260018.A.a.a.a.b.a	ENSGT00940000157045 #15	ENSGT00940000161037	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184.q.a.h ##24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000155985 #27	ENSGT00940000157901	ENSGT00390000005163	ENSGT01100000263497.C	ENSGT00390000004313	ENSGT00940000156775	ENSGT00940000159813	ENSGT00940000158879	ENSGT00390000015361	ENSGT00530000063727.A	ENSGT00390000014549
Mus_A	ANCESTRAL SPECIES	12	ENSGT00940000164126	ENSGT00390000007318	ENSGT00390000002873.h	ENSGT00940000157279	ENSGT00510000046608.B	ENSGT01090000260018.A.a.a.a.a.b.b	ENSGT01090000260018.A.a.a.a.a.b.a.f	ENSGT01090000260018.A.a.a.a.b.a	ENSGT00940000157045 #15	ENSGT00940000161037	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b.d #23	ENSGT00910000144184.q.a.h ##24	ENSGT00940000159705 #25	ENSGT00940000156415.m.a #26	ENSGT00940000155985 #27	ENSGT00940000157901	ENSGT00390000005163	ENSGT01100000263497.C	ENSGT00390000004313	ENSGT00940000156775	ENSGT00940000159813	ENSGT00940000158879	ENSGT00390000015361	ENSGT00530000063727.A	ENSGT00390000014549
Mus_B	ANCESTRAL SPECIES	11	ENSGT00390000007318	ENSGT00390000002873.h	ENSGT00940000157279	ENSGT00510000046608.B	ENSGT01090000260018.A.a.a.a.a.b.b	ENSGT01090000260018.A.a.a.a.a.b.a.f	ENSGT00940000171119	ENSGT01090000260018.A.a.a.a.b.a	ENSGT00940000157045 #15	ENSGT00940000161037	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b.d #23	ENSGT00910000144184.q.a.h ##24	ENSGT00940000159705 #25	ENSGT00940000156415.m.a #26	ENSGT00940000155985 #27	ENSGT00940000157901	ENSGT00390000005163	ENSGT01100000263497.C	ENSGT00390000004313	ENSGT00940000156775	ENSGT00940000159813	ENSGT00940000158879	ENSGT00390000015361	ENSGT00530000063727.A	ENSGT00390000014549
Mouse	MODERN SPECIES	5	Gm11100 (ENSMUSG00000079357)	Thoc7 (ENSMUSG00000053453)	Atxn7 (ENSMUSG00000021738)	Psmd6 (ENSMUSG00000021737)	Or2t6 (ENSMUSG00000052417)	Or2t1 (ENSMUSG00000072707)	Il3ra (ENSMUSG00000068758)	Or2t35 (ENSMUSG00000091809)	Slc4a7 (ENSMUSG00000021733) #15	Nek10 (ENSMUSG00000042567)	Lrrc3b (ENSMUSG00000045201) #17	Oxsm (ENSMUSG00000021786) #18	Ngly1 (ENSMUSG00000021785) #19	Top2b (ENSMUSG00000017485) #20	Rarb (ENSMUSG00000017491) #21	Thrb (ENSMUSG00000021779) #22	Nr1d2 (ENSMUSG00000021775) #23	Rpl15 (ENSMUSG00000012405) ##24	Nkiras1 (ENSMUSG00000021772) #25	Ube2e1 (ENSMUSG00000021774) #26	Ube2e2 (ENSMUSG00000058317) #27
Mus_C	ANCESTRAL SPECIES	26	ENSGT00390000007318	ENSGT00390000002873.h	ENSGT00940000157279	ENSGT00510000046608.B	ENSGT01090000260018.A.a.a.a.a.b.b	ENSGT01090000260018.A.a.a.a.a.b.a.f	ENSGT00940000171119	ENSGT01090000260018.A.a.a.a.b.a	ENSGT00940000157045 #15	ENSGT00940000161037	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b.c.a #23	ENSGT00910000144184.r.h ##24	ENSGT00940000159705 #25	ENSGT00940000156415.m.a #26	ENSGT00940000155985 #27	ENSGT00940000157901	ENSGT00390000005163	ENSGT01100000263497.C	ENSGT00390000004313	ENSGT00940000156775	ENSGT00940000159813	ENSGT00940000158879	ENSGT00390000015361	ENSGT00530000063727.A	ENSGT00390000014549
spretus	MODERN SPECIES	5	Thoc7 (MGP_SPRETEiJ_G0019833)	MGP_SPRETEiJ_G0019834	Psmd6 (MGP_SPRETEiJ_G0019835)	Or2t6 (MGP_SPRETEiJ_G0019836)	Or2t1 (MGP_SPRETEiJ_G0019837)	Il3ra (MGP_SPRETEiJ_G0019838)	Or2t35 (MGP_SPRETEiJ_G0019839)	Slc4a7 (MGP_SPRETEiJ_G0019840) #15	Nek10 (MGP_SPRETEiJ_G0019841)	Lrrc3b (MGP_SPRETEiJ_G0019842) #17	MGP_SPRETEiJ_G0019843	Oxsm (MGP_SPRETEiJ_G0019844) #18	Ngly1 (MGP_SPRETEiJ_G0019845) #19	Top2b (MGP_SPRETEiJ_G0019846) #20	Rarb (MGP_SPRETEiJ_G0019847) #21	Thrb (MGP_SPRETEiJ_G0019848) #22	Nr1d2 (MGP_SPRETEiJ_G0019849) #23	Nkiras1 (MGP_SPRETEiJ_G0019850) #25	Ube2e1 (MGP_SPRETEiJ_G0019851) #26	Ube2e2 (MGP_SPRETEiJ_G0019852) #27	MGP_SPRETEiJ_G0019853	MGP_SPRETEiJ_G0019854	Nid2 (MGP_SPRETEiJ_G0019855)	Rtraf (MGP_SPRETEiJ_G0019856)	Gng2 (MGP_SPRETEiJ_G0019857)	Saysd1 (MGP_SPRETEiJ_G0019858)	Kcnk5 (MGP_SPRETEiJ_G0019859)	Kcnk16 (MGP_SPRETEiJ_G0019860)	Nudt13 (MGP_SPRETEiJ_G0019861)	Ecd (MGP_SPRETEiJ_G0019862)	Fam149b (MGP_SPRETEiJ_G0019863)
Steppe mouse	MODERN SPECIES	2326																Thrb (ENSMSIG00000001348) #22
Ryukyu mouse	MODERN SPECIES	5	Cdhr18 (MGP_CAROLIEiJ_G0018956)	Thoc7 (MGP_CAROLIEiJ_G0018957)	Atxn7 (MGP_CAROLIEiJ_G0018958)	Psmd6 (MGP_CAROLIEiJ_G0018959)	Or2t6 (MGP_CAROLIEiJ_G0018960)	Or2t1 (MGP_CAROLIEiJ_G0018961)	Il3ra (MGP_CAROLIEiJ_G0018962)	Or2t35 (MGP_CAROLIEiJ_G0018963)	Slc4a7 (MGP_CAROLIEiJ_G0018964) #15	MGP_CAROLIEiJ_G0018965	Lrrc3b (MGP_CAROLIEiJ_G0018966) #17	Oxsm (MGP_CAROLIEiJ_G0018967) #18	Ngly1 (MGP_CAROLIEiJ_G0018968) #19	Top2b (MGP_CAROLIEiJ_G0018969) #20	Rarb (MGP_CAROLIEiJ_G0018970) #21	Thrb (MGP_CAROLIEiJ_G0018971) #22	Nr1d2 (MGP_CAROLIEiJ_G0018972) #23	MGP_CAROLIEiJ_G0018973 #24	Nkiras1 (MGP_CAROLIEiJ_G0018974) #25	Ube2e1 (MGP_CAROLIEiJ_G0018975) #26	Ube2e2 (MGP_CAROLIEiJ_G0018976) #27	Nid2 (MGP_CAROLIEiJ_G0018977)	Rtraf (MGP_CAROLIEiJ_G0018978)	Gng2 (MGP_CAROLIEiJ_G0018979)	Saysd1 (MGP_CAROLIEiJ_G0018980)	Kcnk5 (MGP_CAROLIEiJ_G0018981)	Kcnk16 (MGP_CAROLIEiJ_G0018982)	Nudt13 (MGP_CAROLIEiJ_G0018983)	Ecd (MGP_CAROLIEiJ_G0018984)	Fam149b (MGP_CAROLIEiJ_G0018985)	Dnajc9 (MGP_CAROLIEiJ_G0018986)
Shrew mouse	MODERN SPECIES	21	Cdhr18 (MGP_PahariEiJ_G0029970)	Thoc7 (MGP_PahariEiJ_G0029971)	Atxn7 (MGP_PahariEiJ_G0029972)	Psmd6 (MGP_PahariEiJ_G0029973)	Or2t6 (MGP_PahariEiJ_G0029974)	Or2t1 (MGP_PahariEiJ_G0029975)	MGP_PahariEiJ_G0029976	Or2t35 (MGP_PahariEiJ_G0029977)	Slc4a7 (MGP_PahariEiJ_G0029978) #15	Nek10 (MGP_PahariEiJ_G0029979)	Lrrc3b (MGP_PahariEiJ_G0029980) #17	Oxsm (MGP_PahariEiJ_G0029981) #18	Ngly1 (MGP_PahariEiJ_G0029982) #19	Top2b (MGP_PahariEiJ_G0029983) #20	Rarb (MGP_PahariEiJ_G0029984) #21	Thrb (MGP_PahariEiJ_G0029985) #22	Nr1d2 (MGP_PahariEiJ_G0029986) #23	MGP_PahariEiJ_G0029987 ##24	Nkiras1 (MGP_PahariEiJ_G0029988) #25	Ube2e1 (MGP_PahariEiJ_G0029989) #26	Ube2e2 (MGP_PahariEiJ_G0029990) #27	Nid2 (MGP_PahariEiJ_G0029991)	Rtraf (MGP_PahariEiJ_G0029992)	Gng2 (MGP_PahariEiJ_G0029993)	Saysd1 (MGP_PahariEiJ_G0029994)	Kcnk5 (MGP_PahariEiJ_G0029995)	Kcnk16 (MGP_PahariEiJ_G0029996)	Nudt13 (MGP_PahariEiJ_G0029997)	Ecd (MGP_PahariEiJ_G0029998)	MGP_PahariEiJ_G0029999	Dnajc9 (MGP_PahariEiJ_G0030000)
Rat	MODERN SPECIES	6	Thoc7 (ENSRNOG00000007701)	Atxn7 (ENSRNOG00000007246)	Psmd6 (ENSRNOG00000006751)	Or2t6 (ENSRNOG00000063635)	Or2t1 (ENSRNOG00000068637)	Or2t35 (ENSRNOG00000062911)	Slc4a7 (ENSRNOG00000005957) #15	Tcea1l1 (ENSRNOG00000005869)	Nek10 (ENSRNOG00000005883)	ENSRNOG00000067381	Lrrc3b (ENSRNOG00000005857) #17	Oxsm (ENSRNOG00000005993) #18	Ngly1 (ENSRNOG00000006143) #19	Top2b (ENSRNOG00000048795) #20	Rarb (ENSRNOG00000024061) #21	Thrb (ENSRNOG00000006649) #22	Nr1d2 (ENSRNOG00000046912) #23	Rpl15 (ENSRNOG00000008140) ##24	Nkiras1 (ENSRNOG00000008565) #25	ENSRNOG00000064141	Ube2e1 (ENSRNOG00000008794) #26	Ube2e2 (ENSRNOG00000032690) #27	Zfp385d (ENSRNOG00000014661) #29	ENSRNOG00000071188	ENSRNOG00000070692	Spetex-2F (ENSRNOG00000029659)	ENSRNOG00000071095	Spetex-2E (ENSRNOG00000065267)	LOC102547212 (ENSRNOG00000070972)	LOC120096906 (ENSRNOG00000068863)	Spetex-2G (ENSRNOG00000070015)
Cricetidae	ANCESTRAL SPECIES	31	ENSGT00940000164126	ENSGT00390000007318	ENSGT00390000002873.h	ENSGT00940000157279	ENSGT00510000046608.B	ENSGT01090000260018.A.a.a.a.a.b.b	ENSGT01090000260018.A.a.a.a.a.b.a.f	ENSGT01090000260018.A.a.a.a.b.a	ENSGT00940000157045 #15	ENSGT00940000161037	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184.q.a.h ##24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000155985 #27	ENSGT00940000160242 #29	ENSGT00940000155748.b	ENSGT00940000154368.k	ENSGT00940000156653	ENSGT00950000183185.c.a.b	ENSGT00940000161631	ENSGT00940000162091	ENSGT00940000161199	ENSGT00940000159235	ENSGT00940000159732
Cricetinae	ANCESTRAL SPECIES	9	ENSGT00390000003322	ENSGT00940000164126	ENSGT00390000002873.h	ENSGT00940000157279	ENSGT00510000046608.B	ENSGT01090000260018.A.a.a.a.a.b.b	ENSGT01090000260018.A.a.a.a.a.b.a.f	ENSGT01090000260018.A.a.a.a.b.a	ENSGT00940000157045 #15	ENSGT00940000161037	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184.q.a.h ##24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000155985 #27	ENSGT00940000160242 #29	ENSGT00940000155748.b	ENSGT00940000154368.k	ENSGT00940000156653	ENSGT00950000183185.c.a.b	ENSGT00940000161631	ENSGT00940000162091	ENSGT00940000161199	ENSGT00940000159235	ENSGT00940000159732
Chinese hamster chok1gshd	MODERN SPECIES	76	Or2t6 (ENSCGRG00001010437)	ENSCGRG00001010787	Or2t1 (ENSCGRG00001012106)	ENSCGRG00001010774	ENSCGRG00001011280	ENSCGRG00001010807	ENSCGRG00001011219	ENSCGRG00001011398	Slc4a7 (ENSCGRG00001019823) #15	Nek10 (ENSCGRG00001023436)	Lrrc3b (ENSCGRG00001010343) #17	Oxsm (ENSCGRG00001010895) #18	Ngly1 (ENSCGRG00001015315) #19	Top2b (ENSCGRG00001020296) #20	Rarb (ENSCGRG00001000228) #21	Thrb (ENSCGRG00001007517) #22	Nr1d2 (ENSCGRG00001007315) #23	Rpl15 (ENSCGRG00001021972) ##24	Nkiras1 (ENSCGRG00001001506) #25	Ube2e1 (ENSCGRG00001002657) #26	Ube2e2 (ENSCGRG00001007796) #27	ENSCGRG00001012384 #29	ENSCGRG00001014762	Sftpd (ENSCGRG00001016517)	Mbl1 (ENSCGRG00001017391)	Sftpa1 (ENSCGRG00001017978)	Mat1a (ENSCGRG00001018656)	Dydc1 (ENSCGRG00001000992)	Dydc2 (ENSCGRG00001005256)	Prxl2a (ENSCGRG00001006989)	Tspan14 (ENSCGRG00001013610)
Golden Hamster	MODERN SPECIES	725												Oxsm (ENSMAUG00000008599) #18	Ngly1 (ENSMAUG00000021151) #19	Top2b (ENSMAUG00000018711) #20	Rarb (ENSMAUG00000000652) #21	Thrb (ENSMAUG00000008673) #22	Nkiras1 (ENSMAUG00000007906) #25	Ube2e1 (ENSMAUG00000015316) #26	Ube2e2 (ENSMAUG00000015091) #27	ENSMAUG00000012393 #29	ENSMAUG00000012877	Sftpd (ENSMAUG00000008377)	Mbl1 (ENSMAUG00000014755)	Sftpa1 (ENSMAUG00000012489)	Mat1a (ENSMAUG00000005630)	Dydc1 (ENSMAUG00000004246)	Dydc2 (ENSMAUG00000021745)	Prxl2a (ENSMAUG00000019951)	Tspan14 (ENSMAUG00000015066)	ENSMAUG00000001819	Nrg3 (ENSMAUG00000011497)
Cricetidae_B	ANCESTRAL SPECIES	42	ENSGT00940000164126	ENSGT00390000007318	ENSGT00390000002873.h	ENSGT00940000157279	ENSGT00510000046608.B	ENSGT01090000260018.A.a.a.a.a.b.b	ENSGT01090000260018.A.a.a.a.a.b.a.f	ENSGT01090000260018.A.a.a.a.b.a	ENSGT00940000157045 #15	ENSGT00940000161037	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184.q.a.h ##24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000155985 #27	ENSGT00940000160242 #29	ENSGT00940000155748.b	ENSGT00940000154368.k	ENSGT00940000156653	ENSGT00950000183185.c.a.b	ENSGT00940000161631	ENSGT00940000162091	ENSGT00940000161199	ENSGT00940000159235	ENSGT00940000159732
Prairie vole	MODERN SPECIES	14	Atxn7 (ENSMOCG00000018713)	Psmd6 (ENSMOCG00000000946)	ENSMOCG00000003409	ENSMOCG00000012122	Or2t6 (ENSMOCG00000002330)	ENSMOCG00000012041	ENSMOCG00000023004	ENSMOCG00000002652	Slc4a7 (ENSMOCG00000000599) #15	Nek10 (ENSMOCG00000020582)	Lrrc3b (ENSMOCG00000002644) #17	Oxsm (ENSMOCG00000019242) #18	Ngly1 (ENSMOCG00000022189) #19	Top2b (ENSMOCG00000002765) #20	Rarb (ENSMOCG00000005835) #21	Thrb (ENSMOCG00000013115) #22	ENSMOCG00000016625 #23	ENSMOCG00000018417 #23	Rpl15 (ENSMOCG00000009270) ##24	Nkiras1 (ENSMOCG00000012003) #25	Ube2e1 (ENSMOCG00000010086) #26	Ube2e2 (ENSMOCG00000018312) #27	ENSMOCG00000003023 #29	ENSMOCG00000005726	Sftpd (ENSMOCG00000022358)	Mbl1 (ENSMOCG00000007278)	Sftpa1 (ENSMOCG00000015086)	Mat1a (ENSMOCG00000022118)	Dydc1 (ENSMOCG00000008679)	Dydc2 (ENSMOCG00000011087)	Prxl2a (ENSMOCG00000003643)
Northern American deer mouse	MODERN SPECIES	22	Thoc7 (ENSPEMG00000000620)	Atxn7 (ENSPEMG00000003214)	Psmd6 (ENSPEMG00000007867)	Or2t6 (ENSPEMG00000014010)	Or2t1 (ENSPEMG00000014201)	Or2t35 (ENSPEMG00000030359)	Slc4a7 (ENSPEMG00000020169) #15	Nek10 (ENSPEMG00000002287)	ENSPEMG00000027561	Lrrc3b (ENSPEMG00000007539) #17	Oxsm (ENSPEMG00000007951) #18	Ngly1 (ENSPEMG00000009786) #19	Top2b (ENSPEMG00000010015) #20	Rarb (ENSPEMG00000011795) #21	ENSPEMG00000026685	Thrb (ENSPEMG00000013006) #22	Nr1d2 (ENSPEMG00000014504) #23	Rpl15 (ENSPEMG00000015540) ##24	Nkiras1 (ENSPEMG00000015836) #25	Ube2e1 (ENSPEMG00000016554) #26	Ube2e2 (ENSPEMG00000018980) #27	ENSPEMG00000030952	ENSPEMG00000026001	ENSPEMG00000029844	ENSPEMG00000029653	ENSPEMG00000012583 #29	Sftpd (ENSPEMG00000010320)	Mbl1 (ENSPEMG00000017415)	Sftpa1 (ENSPEMG00000027926)	Mat1a (ENSPEMG00000008918)	Dydc1 (ENSPEMG00000013569)
Rodentia_A	ANCESTRAL SPECIES	29	ENSGT00940000155488	ENSGT00940000158391 #7	ENSGT00940000157527 #8	ENSGT00940000157131.b #9	ENSGT00560000077278.b	ENSGT00940000153704.A #11	ENSGT00390000018696 #12	ENSGT00940000158728 #13	ENSGT00940000157045 #15	ENSGT00940000161037	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184.q.b.a #24	ENSGT00910000144184.q.a.h ##24	ENSGT00940000159705 #25	ENSGT00940000156415.p #26	ENSGT00940000155985 #27	ENSGT00940000160242 #29	ENSGT00940000154107.a #30	ENSGT00940000154995 #31	ENSGT00390000017863 #32	ENSGT00940000154337.w #33	ENSGT00530000063528.A.b #34	ENSGT00940000156869 #36	ENSGT00390000008096.A #37	ENSGT00940000157121
Sciuridae	ANCESTRAL SPECIES	37	ENSGT00940000155488	ENSGT00940000158391 #7	ENSGT00940000157527 #8	ENSGT00940000157131.b #9	ENSGT00560000077278.b	ENSGT00940000153704.A #11	ENSGT00390000018696 #12	ENSGT00940000158728 #13	ENSGT00940000157045 #15	ENSGT00940000161037	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184.q.b.a #24	ENSGT00910000144184.q.a.h ##24	ENSGT00940000159705 #25	ENSGT00940000156415.p #26	ENSGT00940000155985 #27	ENSGT00940000160242 #29	ENSGT00940000154107.a.f.b #30	ENSGT00940000154995 #31	ENSGT00390000017863 #32	ENSGT00940000154337.w #33	ENSGT00530000063528.A.b #34	ENSGT00940000156869 #36	ENSGT00390000008096.A #37	ENSGT00940000157121
Marmotini	ANCESTRAL SPECIES	12	ENSGT00940000155488	ENSGT00940000158391 #7	ENSGT00940000157527 #8	ENSGT00940000157131.b #9	ENSGT00560000077278.b	ENSGT00940000153704.A #11	ENSGT00390000018696 #12	ENSGT00940000158728 #13	ENSGT00940000157045 #15	ENSGT00940000161037	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b.h #23	ENSGT00950000183122.C.c.b	ENSGT00910000144184.q.a.h ##24	ENSGT00940000159705 #25	ENSGT00940000156415.p #26	ENSGT00940000155985 #27	ENSGT00940000160242 #29	ENSGT00940000154107.a.f.b #30	ENSGT00940000154107.a.e #30	ENSGT00940000154995 #31	ENSGT00390000017863 #32	ENSGT00940000154337.w #33	ENSGT00530000063528.A.b #34	ENSGT00940000156869 #36	ENSGT00390000008096.A #37
Marmotini_b	ANCESTRAL SPECIES	24	ENSGT00940000158391 #7	ENSGT00940000157527 #8	ENSGT00940000157131.b #9	ENSGT00560000077278.b	ENSGT00940000153704.A #11	ENSGT00390000018696 #12	ENSGT00940000158728 #13	ENSGT00940000153404.a.cb	ENSGT00940000157045 #15	ENSGT00940000161037	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b.h #23	ENSGT00950000183122.C.c.b	ENSGT00910000144184.q.a.h ##24	ENSGT00940000159705 #25	ENSGT00940000156415.p #26	ENSGT00940000155985 #27	ENSGT00940000160242 #29	ENSGT00940000154107.a.e #30	ENSGT00940000154995 #31	ENSGT00390000017863 #32	ENSGT00940000154337.w #33	ENSGT00530000063528.A.b #34	ENSGT00940000156869 #36	ENSGT00390000008096.A #37	ENSGT00940000157121
Arctic ground squirrel	MODERN SPECIES	11	TGFBR2 (ENSUPAG00010002483) #8	RBMS3 (ENSUPAG00010002090) #9	ZCWPW2 (ENSUPAG00010002068)	AZI2 (ENSUPAG00010002023) #11	CMC1 (ENSUPAG00010002007) #12	EOMES (ENSUPAG00010001984) #13	ENSUPAG00010001978	SLC4A7 (ENSUPAG00010001831) #15	NEK10 (ENSUPAG00010001669)	ENSUPAG00010001663	LRRC3B (ENSUPAG00010001655) #17	OXSM (ENSUPAG00010001639) #18	NGLY1 (ENSUPAG00010001590) #19	TOP2B (ENSUPAG00010001529) #20	RARB (ENSUPAG00010001509) #21	THRB (ENSUPAG00010001450) #22	NR1D2 (ENSUPAG00010001435) #23	ENSUPAG00010001425	ENSUPAG00010001395 ##24	NKIRAS1 (ENSUPAG00010001375) #25	UBE2E1 (ENSUPAG00010001360) #26	UBE2E2 (ENSUPAG00010001343) #27
Squirrel	MODERN SPECIES	73	GADL1 (ENSSTOG00000014390) #7	TGFBR2 (ENSSTOG00000019376) #8	RBMS3 (ENSSTOG00000006324) #9	ZCWPW2 (ENSSTOG00000011057)	AZI2 (ENSSTOG00000024539) #11	CMC1 (ENSSTOG00000007520) #12	EOMES (ENSSTOG00000020918) #13	ENSSTOG00000023565	SLC4A7 (ENSSTOG00000012151) #15	NEK10 (ENSSTOG00000012142)	LRRC3B (ENSSTOG00000010920) #17	OXSM (ENSSTOG00000004977) #18	NGLY1 (ENSSTOG00000000939) #19	TOP2B (ENSSTOG00000008012) #20	RARB (ENSSTOG00000007994) #21	THRB (ENSSTOG00000005197) #22	ENSSTOG00000002444 #23	ENSSTOG00000022967	ENSSTOG00000011153 ##24	NKIRAS1 (ENSSTOG00000010538) #25	UBE2E1 (ENSSTOG00000025799) #26	ENSSTOG00000034552 #27	ENSSTOG00000028898	ZNF385D (ENSSTOG00000005742) #29	ENSSTOG00000031366	SGO1 (ENSSTOG00000003766) #30	KAT2B (ENSSTOG00000002904) #31	PP2D1 (ENSSTOG00000012388) #32	RAB5A (ENSSTOG00000026229) #33	KCNH8 (ENSSTOG00000023006) #36	SATB1 (ENSSTOG00000010856) #37
Alpin marmot	MODERN SPECIES	24	STT3B (ENSMMMG00000013968)	ENSMMMG00000013992	GADL1 (ENSMMMG00000014004) #7	TGFBR2 (ENSMMMG00000014032) #8	RBMS3 (ENSMMMG00000014085) #9	AZI2 (ENSMMMG00000014347) #11	CMC1 (ENSMMMG00000014367) #12	EOMES (ENSMMMG00000014377) #13	SLC4A7 (ENSMMMG00000014444) #15	NEK10 (ENSMMMG00000021387)	LRRC3B (ENSMMMG00000021431) #17	OXSM (ENSMMMG00000021441) #18	NGLY1 (ENSMMMG00000021446) #19	TOP2B (ENSMMMG00000021487) #20	RARB (ENSMMMG00000021511) #21	THRB (ENSMMMG00000021530) #22	ENSMMMG00000021541	NR1D2 (ENSMMMG00000021548) #23	ENSMMMG00000021555	ENSMMMG00000021561 ##24	NKIRAS1 (ENSMMMG00000021569) #25	UBE2E1 (ENSMMMG00000021577) #26	ENSMMMG00000021585	ENSMMMG00000021595 #27	ENSMMMG00000021611	CLEC1B (ENSMMMG00000021623)	CLEC9A (ENSMMMG00000021630)	CLEC1A (ENSMMMG00000021640)	CLEC7A (ENSMMMG00000021652)	ENSMMMG00000021660	OLR1 (ENSMMMG00000021662)
Eurasian red squirrel	MODERN SPECIES	7	TGFBR2 (ENSSVLG00005018772) #8	ENSSVLG00005018892	RBMS3 (ENSSVLG00005018972) #9	ZCWPW2 (ENSSVLG00005019307)	AZI2 (ENSSVLG00005019399) #11	ENSSVLG00005019540 #12	EOMES (ENSSVLG00005019661) #13	ENSSVLG00005019801	SLC4A7 (ENSSVLG00005020082) #15	NEK10 (ENSSVLG00005021843)	LRRC3B (ENSSVLG00005022542) #17	OXSM (ENSSVLG00005022659) #18	NGLY1 (ENSSVLG00005022722) #19	TOP2B (ENSSVLG00005022880) #20	RARB (ENSSVLG00005023141) #21	THRB (ENSSVLG00005023254) #22	ENSSVLG00005023338 #23	RPL15 (ENSSVLG00005023393) #24	NKIRAS1 (ENSSVLG00005023434) #25	UBE2E1 (ENSSVLG00005023468) #26	ENSSVLG00005023550	ENSSVLG00005023574	ENSSVLG00005023602	UBE2E2 (ENSSVLG00005023634) #27	ENSSVLG00005023653	ENSSVLG00005023675	ENSSVLG00005023698	ENSSVLG00005023738	TOMM22 (ENSSVLG00005023755)	ZNF385D (ENSSVLG00005023781) #29	ENSSVLG00005023824
Hystricomorpha	ANCESTRAL SPECIES	34	ENSGT00940000158391 #7	ENSGT00940000157527 #8	ENSGT00940000157131.b #9	ENSGT00940000153704.A.n #11	ENSGT00560000077278.b	ENSGT00940000153704.A.m.b #11	ENSGT00390000018696 #12	ENSGT00940000158728 #13	ENSGT00940000157045 #15	ENSGT00940000161037	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184.q.a.h ##24	ENSGT00940000159705 #25	ENSGT00940000156415.p #26	ENSGT00940000155985 #27	ENSGT00940000160242 #29	ENSGT00940000154107.a #30	ENSGT00940000154995 #31	ENSGT00390000017863 #32	ENSGT00940000154337.w #33	ENSGT00530000063528.A.b.b #34	ENSGT00940000156869 #36	ENSGT00390000008096.A #37	ENSGT00940000157121	ENSGT00940000155660.b
Naked mole-rat female	MODERN SPECIES	28	ENSHGLG00000041224	ENSHGLG00000041249	ENSHGLG00000045324	OXSM (ENSHGLG00000001247) #18	NGLY1 (ENSHGLG00000001215) #19	ENSHGLG00000045011	TOP2B (ENSHGLG00000001067) #20	ENSHGLG00000045457	ENSHGLG00000000955	ENSHGLG00000048336	RARB (ENSHGLG00000000994) #21	ENSHGLG00000000935	ENSHGLG00000002509	ENSHGLG00000048486	ENSHGLG00000045264	THRB (ENSHGLG00000000869) #22	ENSHGLG00000046051 #23	RPL15 (ENSHGLG00000049089) #24	ENSHGLG00000050871	NKIRAS1 (ENSHGLG00000040518) #25	ENSHGLG00000041363 #26	ENSHGLG00000044584	ENSHGLG00000048937 #27	ENSHGLG00000043373	ENSHGLG00000047312	ENSHGLG00000008053	ZNF385D (ENSHGLG00000008536) #29	ENSHGLG00000007573	SGOL1 (ENSHGLG00000004889) #30	ENSHGLG00000003205 #31	ENSHGLG00000006921 #32
Hystricomorpha_a	ANCESTRAL SPECIES	50	ENSGT00940000158391 #7	ENSGT00940000157527 #8	ENSGT00940000157131.b #9	ENSGT00940000153704.A.n #11	ENSGT00560000077278.b	ENSGT00940000153704.A.m.b #11	ENSGT00390000018696.j.a #12	ENSGT00940000158728 #13	ENSGT00940000157045 #15	ENSGT00940000161037	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184.q.a.h ##24	ENSGT00940000159705 #25	ENSGT00940000156415.p #26	ENSGT00940000155985 #27	ENSGT00940000160242 #29	ENSGT00940000154107.a #30	ENSGT00940000154995 #31	ENSGT00390000017863 #32	ENSGT00940000154337.w #33	ENSGT00530000063528.A.b.b #34	ENSGT00940000156869 #36	ENSGT00390000008096.A #37	ENSGT00940000157121	ENSGT00940000155660.b
Guinea pig	MODERN SPECIES		OSBPL10 (ENSCPOG00000014318)	STT3B (ENSCPOG00000014313)	GADL1 (ENSCPOG00000003744) #7	TGFBR2 (ENSCPOG00000014487) #8	RBMS3 (ENSCPOG00000006457) #9	AZI2 (ENSCPOG00000014333) #11	CMC1 (ENSCPOG00000014332) #12	EOMES (ENSCPOG00000004381) #13	SLC4A7 (ENSCPOG00000004444) #15	NEK10 (ENSCPOG00000004440)	LRRC3B (ENSCPOG00000014846) #17	OXSM (ENSCPOG00000021070) #18	NGLY1 (ENSCPOG00000015421) #19	TOP2B (ENSCPOG00000015416) #20	RARB (ENSCPOG00000015410) #21	THRB (ENSCPOG00000010519) #22	NR1D2 (ENSCPOG00000004574) #23	ENSCPOG00000030042 ##24	NKIRAS1 (ENSCPOG00000038523) #25	UBE2E1 (ENSCPOG00000002251) #26	UBE2E2 (ENSCPOG00000034482) #27	ZNF385D (ENSCPOG00000033668) #29	ENSCPOG00000020230	SGO1 (ENSCPOG00000008318) #30	ENSCPOG00000032533 #31	ENSCPOG00000008310 #31	RAB5A (ENSCPOG00000005322) #33	EFHB (ENSCPOG00000001936) #34	KCNH8 (ENSCPOG00000033526) #36	SATB1 (ENSCPOG00000007101) #37	TBC1D5 (ENSCPOG00000011184)
Hystricomorpha_b	ANCESTRAL SPECIES	56	ENSGT00940000158391 #7	ENSGT00940000157527 #8	ENSGT00940000157131.b #9	ENSGT00560000077278.b	ENSGT00940000153704.A.m.b #11	ENSGT00390000018696.j.a #12	ENSGT00940000153704.A.n #11	ENSGT00940000158728 #13	ENSGT00940000157045 #15	ENSGT00940000161037	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184.q.a.h ##24	ENSGT00940000159705 #25	ENSGT00940000156415.p #26	ENSGT00940000155985 #27	ENSGT00940000160242 #29	ENSGT00940000154107.a #30	ENSGT00940000154995 #31	ENSGT00390000017863 #32	ENSGT00940000154337.w.f #33	ENSGT00530000063528.A.b.b #34	ENSGT00940000156869 #36	ENSGT00390000008096.A.a #37	ENSGT00940000157121	ENSGT00940000155660.b
Long-tailed chinchilla	MODERN SPECIES	137	ENSCLAG00000010789	GADL1 (ENSCLAG00000008630) #7	TGFBR2 (ENSCLAG00000008262) #8	RBMS3 (ENSCLAG00000005866) #9	ZCWPW2 (ENSCLAG00000004697)	ENSCLAG00000004215 #11	CMC1 (ENSCLAG00000004086) #12	EOMES (ENSCLAG00000006436) #13	SLC4A7 (ENSCLAG00000005078) #15	NEK10 (ENSCLAG00000011539)	LRRC3B (ENSCLAG00000009219) #17	OXSM (ENSCLAG00000007028) #18	NGLY1 (ENSCLAG00000006643) #19	TOP2B (ENSCLAG00000005100) #20	RARB (ENSCLAG00000005535) #21	THRB (ENSCLAG00000004182) #22	NR1D2 (ENSCLAG00000009606) #23	RPL15 (ENSCLAG00000013452) #24	NKIRAS1 (ENSCLAG00000011586) #25	UBE2E1 (ENSCLAG00000013711) #26	UBE2E2 (ENSCLAG00000006330) #27	ENSCLAG00000005308	ZNF385D (ENSCLAG00000004322) #29	SGO1 (ENSCLAG00000007648) #30	KAT2B (ENSCLAG00000006506) #31	PP2D1 (ENSCLAG00000006309) #32	ENSCLAG00000006053 #33	EFHB (ENSCLAG00000005065) #34	KCNH8 (ENSCLAG00000004698) #36	ENSCLAG00000010743 #37	TBC1D5 (ENSCLAG00000007497)
Degu	MODERN SPECIES	100	TGFBR2 (ENSODEG00000003763) #8	ENSODEG00000003736	RBMS3 (ENSODEG00000003651) #9	AZI2 (ENSODEG00000003523) #11	EOMES (ENSODEG00000003480) #13	SLC4A7 (ENSODEG00000003429) #15	NEK10 (ENSODEG00000003264)	LRRC3B (ENSODEG00000003166) #17	OXSM (ENSODEG00000003134) #18	NGLY1 (ENSODEG00000003087) #19	ENSODEG00000018912	ENSODEG00000003058	TOP2B (ENSODEG00000002867) #20	RARB (ENSODEG00000002769) #21	ENSODEG00000018882	THRB (ENSODEG00000002741) #22	ENSODEG00000002947	NR1D2 (ENSODEG00000002903) #23	ENSODEG00000002871 ##24	NKIRAS1 (ENSODEG00000002859) #25	UBE2E1 (ENSODEG00000002839) #26	ENSODEG00000002817	UBE2E2 (ENSODEG00000002776) #27	ENSODEG00000018888	ENSODEG00000018931	ENSODEG00000002705	ZNF385D (ENSODEG00000002684) #29
Laurasiatheria	ANCESTRAL SPECIES	2	ENSGT00940000157527 #8	ENSGT00970000197687	ENSGT00940000157131.b #9	ENSGT00560000077278.b	ENSGT00940000153704.A #11	ENSGT00390000018696 #12	ENSGT00940000158728 #13	ENSGT00940000157045 #15	ENSGT00940000161037	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00910000147406	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184.q.a ##24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000155985 #27	ENSGT00940000160242 #29	ENSGT00940000154107.a #30	ENSGT00940000154995 #31	ENSGT00390000017863 #32	ENSGT00940000154337 #33	ENSGT00530000063528.A.b #34	ENSGT00940000154989	ENSGT00940000156869 #36	ENSGT00390000008096.A #37	ENSGT00940000157121
Laurasiatheria_a	ANCESTRAL SPECIES	3	ENSGT00940000157527 #8	ENSGT00970000197687	ENSGT00940000157131.b #9	ENSGT00560000077278.b	ENSGT00940000153704.A #11	ENSGT00390000018696 #12	ENSGT00940000158728 #13	ENSGT00940000157045 #15	ENSGT00940000161037	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00910000147406	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184.q.a ##24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000155985 #27	ENSGT00940000160242 #29	ENSGT00940000154107.a #30	ENSGT00940000154995 #31	ENSGT00390000017863 #32	ENSGT00940000154337 #33	ENSGT00530000063528.A.b #34	ENSGT00940000156869 #36	ENSGT00390000008096.A #37	ENSGT00940000157121	ENSGT00940000155660.b
Artiodactyla	ANCESTRAL SPECIES	2	ENSGT00940000158391 #7	ENSGT00940000157527 #8	ENSGT00970000197687	ENSGT00940000157131.b #9	ENSGT00560000077278.b	ENSGT00940000153704.A #11	ENSGT00390000018696 #12	ENSGT00940000158728 #13	ENSGT00940000157045 #15	ENSGT00940000161037	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184.q.a ##24	ENSGT00910000144184.r ##24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000155985 #27	ENSGT00940000160242 #29	ENSGT00940000154107.a #30	ENSGT00940000154995 #31	ENSGT00390000017863 #32	ENSGT00940000154337 #33	ENSGT00530000063528.A.b #34	ENSGT00940000156869 #36	ENSGT00390000008096.A #37	ENSGT00940000157121
Suina	ANCESTRAL SPECIES	1	ENSGT00940000155488	ENSGT00940000158391 #7	ENSGT00940000157527 #8	ENSGT00940000157131.b #9	ENSGT00560000077278.b	ENSGT00940000153704.A #11	ENSGT00390000018696 #12	ENSGT00940000158728 #13	ENSGT00940000157045 #15	ENSGT00940000161037	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184.q.b.a #24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000155985 #27	ENSGT00940000160242 #29	ENSGT00940000154107.a #30	ENSGT00940000154995 #31	ENSGT00390000017863 #32	ENSGT00940000154337 #33	ENSGT00530000063528.A.b #34	ENSGT00940000156869 #36	ENSGT00390000008096.A #37	ENSGT00940000157121	ENSGT00940000155660.b
Chacoan peccary	MODERN SPECIES	950	GADL1 (ENSCWAG00000019018) #7	TGFBR2 (ENSCWAG00000018989) #8	RBMS3 (ENSCWAG00000018225) #9	ZCWPW2 (ENSCWAG00000018121)	AZI2 (ENSCWAG00000018088) #11	CMC1 (ENSCWAG00000018035) #12	EOMES (ENSCWAG00000017919) #13	SLC4A7 (ENSCWAG00000016053) #15	ENSCWAG00000015947	ENSCWAG00000015922	LRRC3B (ENSCWAG00000015910) #17	OXSM (ENSCWAG00000015865) #18	NGLY1 (ENSCWAG00000015654) #19	TOP2B (ENSCWAG00000015306) #20	RARB (ENSCWAG00000015187) #21	THRB (ENSCWAG00000015063) #22	NR1D2 (ENSCWAG00000015017) #23	RPL15 (ENSCWAG00000014981) #24	NKIRAS1 (ENSCWAG00000014944) #25	ENSCWAG00000014883 #26	ENSCWAG00000014850	UBE2E2 (ENSCWAG00000014787) #27	ZNF385D (ENSCWAG00000014736) #29	SGO1 (ENSCWAG00000014455) #30	KAT2B (ENSCWAG00000014268) #31	PP2D1 (ENSCWAG00000014209) #32	RAB5A (ENSCWAG00000014144) #33	EFHB (ENSCWAG00000013945) #34	KCNH8 (ENSCWAG00000013749) #36	SATB1 (ENSCWAG00000013549) #37	TBC1D5 (ENSCWAG00000013341)
Pig	MODERN SPECIES	4	ENSSSCG00000047248	ENSSSCG00000061983	RBMS3 (ENSSSCG00000036381) #9	ZCWPW2 (ENSSSCG00000038376)	AZI2 (ENSSSCG00000028258) #11	CMC1 (ENSSSCG00000041813) #12	EOMES (ENSSSCG00000040057) #13	SLC4A7 (ENSSSCG00000011218) #15	NEK10 (ENSSSCG00000011217)	LRRC3B (ENSSSCG00000011216) #17	ENSSSCG00000045332	OXSM (ENSSSCG00000011215) #18	NGLY1 (ENSSSCG00000011214) #19	TOP2B (ENSSSCG00000011213) #20	RARB (ENSSSCG00000011212) #21	THRB (ENSSSCG00000036033) #22	ENSSSCG00000059596	NR1D2 (ENSSSCG00000027017) #23	ENSSSCG00000037030 ##24	NKIRAS1 (ENSSSCG00000024296) #25	UBE2E1 (ENSSSCG00000026488) #26	UBE2E2 (ENSSSCG00000031392) #27	ENSSSCG00000047980	ENSSSCG00000046361	ENSSSCG00000060562	ENSSSCG00000051844	ZNF385D (ENSSSCG00000011208) #29	ENSSSCG00000011206	SGO1 (ENSSSCG00000011207) #30	ENSSSCG00000059380	KAT2B (ENSSSCG00000024621) #31
Artiodactyla_a	ANCESTRAL SPECIES	8											ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184.q.a ##24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000155985 #27	ENSGT00940000160242 #29	ENSGT00940000154107.a #30	ENSGT00940000154995 #31	ENSGT00390000017863 #32	ENSGT00940000154337 #33	ENSGT00530000063528.A.b #34	ENSGT00940000156869 #36	ENSGT00390000008096.A #37	ENSGT00940000157121	ENSGT00940000155660.b
Camelidae	ANCESTRAL SPECIES	92											ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184.q.a ##24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000155985 #27	ENSGT00940000160242 #29	ENSGT00940000154107.a #30	ENSGT00940000154995 #31	ENSGT00390000017863 #32	ENSGT00940000154337 #33	ENSGT00530000063528.A.b #34	ENSGT00940000156869 #36	ENSGT00390000008096.A #37	ENSGT00940000157121	ENSGT00940000155660.b
Arabian camel	MODERN SPECIES		TOPBP1 (ENSCDRG00005005471)	CDV3 (ENSCDRG00005005385)	BFSP2 (ENSCDRG00005005340)	TMEM108 (ENSCDRG00005005300)	NPHP3 (ENSCDRG00005005225)	UBA5 (ENSCDRG00005004976)	ACKR4 (ENSCDRG00005004955)	ACAD11 (ENSCDRG00005004906)	DNAJC13 (ENSCDRG00005004447)	ACP3 (ENSCDRG00005004369)	LRRC3B (ENSCDRG00005004351) #17	OXSM (ENSCDRG00005004312) #18	NGLY1 (ENSCDRG00005004096) #19	TOP2B (ENSCDRG00005003802) #20	RARB (ENSCDRG00005003736) #21	THRB (ENSCDRG00005003618) #22	NR1D2 (ENSCDRG00005003553) #23	ENSCDRG00005003520 ##24	NKIRAS1 (ENSCDRG00005003487) #25	UBE2E1 (ENSCDRG00005003446) #26	ENSCDRG00005003402	UBE2E2 (ENSCDRG00005003374) #27	ZNF385D (ENSCDRG00005003324) #29	ENSCDRG00005003293	KAT2B (ENSCDRG00005002364) #31	PP2D1 (ENSCDRG00005002250) #32	RAB5A (ENSCDRG00005002235) #33	EFHB (ENSCDRG00005002193) #34	KCNH8 (ENSCDRG00005002155) #36	SATB1 (ENSCDRG00005002136) #37	ENSCDRG00005002109
Alpaca	MODERN SPECIES	6114																THRB (ENSVPAG00000005832) #22
Artiodactyla_b	ANCESTRAL SPECIES	6	ENSGT00940000158075	ENSGT00550000074935	ENSGT00390000004945	ENSGT00390000001491.a	ENSGT00390000010950	ENSGT01050000244968.c	ENSGT00940000157357	ENSGT00680000101436	ENSGT00940000156591	ENSGT00390000012054.b	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184.q.b.a #24	ENSGT00910000144184.r ##24	ENSGT00940000159705 #25	ENSGT00940000156415.d #26	ENSGT00940000155985 #27	ENSGT00940000160242 #29	ENSGT00940000154107.a #30	ENSGT00940000154995 #31	ENSGT00390000017863 #32	ENSGT00940000154337 #33	ENSGT00530000063528.A.b #34	ENSGT00940000156869 #36	ENSGT00390000008096.A #37	ENSGT00940000157121
Pecora	ANCESTRAL SPECIES	31	ENSGT00940000158075	ENSGT00550000074935.y	ENSGT00390000004945.i	ENSGT00390000001491.a	ENSGT00390000010950	ENSGT01050000244968.c	ENSGT00940000157357	ENSGT00680000101436	ENSGT00940000156591	ENSGT00390000012054.b	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184.q.b.a #24	ENSGT00910000144184.q.a ##24	ENSGT00940000159705 #25	ENSGT00940000156415.d #26	ENSGT00940000155985 #27	ENSGT00940000160242 #29
Yarkand deer	MODERN SPECIES	25	FNTA (ENSCHYG00000026872)	ENSCHYG00000026881	ENSCHYG00000026883	HGSNAT (ENSCHYG00000026891)	INTS10 (ENSCHYG00000026898)	CSGALNACT1 (ENSCHYG00000026922)	SH2D4A (ENSCHYG00000026929)	PSD3 (ENSCHYG00000026947)	ENSCHYG00000027005	ENSCHYG00000027006	LRRC3B (ENSCHYG00000027009) #17	OXSM (ENSCHYG00000008677) #18	NGLY1 (ENSCHYG00000008725) #19	TOP2B (ENSCHYG00000009238) #20	RARB (ENSCHYG00000011336) #21	THRB (ENSCHYG00000011439) #22	NR1D2 (ENSCHYG00000011566) #23	ENSCHYG00000011588	ENSCHYG00000011604	ENSCHYG00000011617 ##24	NKIRAS1 (ENSCHYG00000011667) #25	ENSCHYG00000011700 #26	ENSCHYG00000011740	UBE2E2 (ENSCHYG00000011749) #27	ZNF385D (ENSCHYG00000011830) #29
Percora_a	ANCESTRAL SPECIES	31	ENSGT00940000158075	ENSGT00550000074935.y	ENSGT00390000004945.i	ENSGT00390000001491.a	ENSGT00390000010950	ENSGT01050000244968.c	ENSGT00940000157357	ENSGT00680000101436	ENSGT00940000156591	ENSGT00390000012054.b	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184.q.b.a #24	ENSGT00910000144184.q.a ##24	ENSGT00940000159705 #25	ENSGT00940000156415.d #26	ENSGT00940000155985 #27	ENSGT00940000160242 #29
Siberian musk deer	MODERN SPECIES	142	POMK (ENSMMSG00000000192)	HGSNAT (ENSMMSG00000000219)	INTS10 (ENSMMSG00000000344)	CSGALNACT1 (ENSMMSG00000000434)	SH2D4A (ENSMMSG00000000491)	PSD3 (ENSMMSG00000000549)	ENSMMSG00000000666	ENSMMSG00000000675	ENSMMSG00000000687	LRRC3B (ENSMMSG00000000699) #17	ENSMMSG00000000713	OXSM (ENSMMSG00000000726) #18	ENSMMSG00000000761 #19	TOP2B (ENSMMSG00000000938) #20	RARB (ENSMMSG00000001288) #21	THRB (ENSMMSG00000001321) #22	NR1D2 (ENSMMSG00000001375) #23	ENSMMSG00000001390	ENSMMSG00000001401 ##24	NKIRAS1 (ENSMMSG00000001410) #25	UBE2E1 (ENSMMSG00000001430) #26	UBE2E2 (ENSMMSG00000001470) #27	ENSMMSG00000001509	ZNF385D (ENSMMSG00000001519) #29	ENSMMSG00000001533
Bovidae	ANCESTRAL SPECIES	30	ENSGT00550000074935.y	ENSGT00390000004945.i	ENSGT00390000001491.a	ENSGT00390000010950	ENSGT01050000244968.c	ENSGT00940000157357	ENSGT00680000101436	ENSGT00940000156591	ENSGT00390000012054.b	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00940000170546	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184.q.b.a #24	ENSGT00940000159705 #25	ENSGT00940000156415.d #26	ENSGT00940000155985 #27	ENSGT00940000160242 #29
Caprinae	ANCESTRAL SPECIES	31	ENSGT00940000158075	ENSGT00550000074935.y.a	ENSGT00390000004945.i	ENSGT00390000001491.a	ENSGT00390000010950	ENSGT01050000244968.c	ENSGT00940000157357	ENSGT00940000156591	ENSGT00390000012054.b	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00940000170546	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184.q.b.a #24	ENSGT00940000159705 #25	ENSGT00940000156415.d #26	ENSGT00940000155985 #27	ENSGT00940000160242 #29
Goat	MODERN SPECIES	19	HOOK3 (ENSCHIG00000016259)	ENSCHIG00000011734	POMK (ENSCHIG00000011543)	HGSNAT (ENSCHIG00000000180)	INTS10 (ENSCHIG00000000076)	CSGALNACT1 (ENSCHIG00000024893)	SH2D4A (ENSCHIG00000018803)	PSD3 (ENSCHIG00000022134)	ENSCHIG00000011996	LRRC3B (ENSCHIG00000011441) #17	OXSM (ENSCHIG00000021539) #18	ENSCHIG00000009722	NGLY1 (ENSCHIG00000027026) #19	TOP2B (ENSCHIG00000021091) #20	RARB (ENSCHIG00000011887) #21	THRB (ENSCHIG00000022036) #22	NR1D2 (ENSCHIG00000013761) #23	ENSCHIG00000014599 #24	NKIRAS1 (ENSCHIG00000012221) #25	UBE2E1 (ENSCHIG00000023454) #26	UBE2E2 (ENSCHIG00000025159) #27	ENSCHIG00000017721 #27	ZNF385D (ENSCHIG00000019119) #29
Rambouillet Sheep	MODERN SPECIES	18	POMK (ENSOARG00020025715)	HGSNAT (ENSOARG00020025720)	INTS10 (ENSOARG00020025726)	CSGALNACT1 (ENSOARG00020025733)	ENSOARG00020025759	PSD3 (ENSOARG00020015217)	ENSOARG00020016997	LRRC3B (ENSOARG00020017045) #17	ENSOARG00020017068	OXSM (ENSOARG00020017097) #18	NGLY1 (ENSOARG00020017155) #19	ENSOARG00020017534	TOP2B (ENSOARG00020017639) #20	RARB (ENSOARG00020019726) #21	ENSOARG00020019867	THRB (ENSOARG00020019917) #22	ENSOARG00020020163	NR1D2 (ENSOARG00020020196) #23	ENSOARG00020020301 ##24	NKIRAS1 (ENSOARG00020020315) #25	ENSOARG00020020552 #27	ENSOARG00020020961	ENSOARG00020020982	ZNF385D (ENSOARG00020021008) #29	ENSOARG00020021090
Bovinae	ANCESTRAL SPECIES	36	ENSGT00550000074935.y	ENSGT00390000004945.i	ENSGT00390000001491.a	ENSGT00390000010950	ENSGT01050000244968.c	ENSGT00940000157357	ENSGT00680000101436	ENSGT00940000156591	ENSGT00390000012054.b	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00940000170546	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184.q.a ##24	ENSGT00940000159705 #25	ENSGT00940000156415.d #26	ENSGT00940000155985 #27	ENSGT00940000160242 #29
American bison	MODERN SPECIES	3153	HOOK3 (ENSBBBG00000002276)	ENSBBBG00000012087	ENSBBBG00000002268	HGSNAT (ENSBBBG00000002264)	INTS10 (ENSBBBG00000012057)	CSGALNACT1 (ENSBBBG00000007882)	SH2D4A (ENSBBBG00000012021)	PSD3 (ENSBBBG00000002247)	ENSBBBG00000002228	LRRC3B (ENSBBBG00000001961) #17	OXSM (ENSBBBG00000011924) #18	NGLY1 (ENSBBBG00000001974) #19	TOP2B (ENSBBBG00000011838) #20	RARB (ENSBBBG00000011789) #21	ENSBBBG00000011768	THRB (ENSBBBG00000011760) #22	NR1D2 (ENSBBBG00000011748) #23	ENSBBBG00000011708 #24	NKIRAS1 (ENSBBBG00000002162) #25	UBE2E1 (ENSBBBG00000011700) #26	ENSBBBG00000011684 #27	ENSBBBG00000011680 #27	ENSBBBG00000002150	ZNF385D (ENSBBBG00000011667) #29
Bos	ANCESTRAL SPECIES	33	ENSGT00940000158075	ENSGT00550000074935.y	ENSGT00390000004945.i	ENSGT00390000001491.a	ENSGT00390000010950	ENSGT01050000244968.c	ENSGT00940000157357	ENSGT00680000101436	ENSGT00940000156591	ENSGT00390000012054.b	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184.q.a ##24	ENSGT00940000159705 #25	ENSGT00940000156415.d #26	ENSGT00940000155985 #27	ENSGT00940000160242 #29
Bos_b	ANCESTRAL SPECIES	35	ENSGT00940000158075	ENSGT00550000074935.y	ENSGT00390000004945.i	ENSGT00390000001491.a	ENSGT00390000010950	ENSGT01050000244968.c	ENSGT00940000157357	ENSGT00680000101436	ENSGT00940000156591	ENSGT00390000012054.b	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184.q.b.a #24	ENSGT00940000159705 #25	ENSGT00940000156415.d #26	ENSGT00940000155985 #27	ENSGT00940000160242 #29
Hybrid Bos Indicus	MODERN SPECIES	19	HOOK3 (ENSBIXG00005028313)	ENSBIXG00005004861	POMK (ENSBIXG00005028237)	HGSNAT (ENSBIXG00005028212)	INTS10 (ENSBIXG00005028161)	CSGALNACT1 (ENSBIXG00005006969)	SH2D4A (ENSBIXG00005028053)	PSD3 (ENSBIXG00005004804)	ENSBIXG00005027609	LRRC3B (ENSBIXG00005027556) #17	OXSM (ENSBIXG00005027522) #18	NGLY1 (ENSBIXG00005006948) #19	TOP2B (ENSBIXG00005027352) #20	RARB (ENSBIXG00005004579) #21	ENSBIXG00005026758	THRB (ENSBIXG00005026717) #22	ENSBIXG00005026584	ENSBIXG00005026572	NR1D2 (ENSBIXG00005026549) #23	RPL15 (ENSBIXG00005007092) ##24	NKIRAS1 (ENSBIXG00005026446) #25	UBE2E1 (ENSBIXG00005026371) #26	ENSBIXG00005026337	UBE2E2 (ENSBIXG00005026317) #27	ZNF385D (ENSBIXG00005006703) #29
Cow	MODERN SPECIES	19	HOOK3 (ENSBTAG00000007634)	FNTA (ENSBTAG00000003201)	POMK (ENSBTAG00000003649)	HGSNAT (ENSBTAG00000033182)	INTS10 (ENSBTAG00000025003)	CSGALNACT1 (ENSBTAG00000004613)	SH2D4A (ENSBTAG00000001186)	ENSBTAG00000051902	PSD3 (ENSBTAG00000033137)	NAT1 (ENSBTAG00000016473)	LRRC3B (ENSBTAG00000033140) #17	OXSM (ENSBTAG00000007031) #18	NGLY1 (ENSBTAG00000003793) #19	TOP2B (ENSBTAG00000004593) #20	RARB (ENSBTAG00000011518) #21	THRB (ENSBTAG00000017802) #22	ENSBTAG00000050025	NR1D2 (ENSBTAG00000018024) #23	RPL15 (ENSBTAG00000033080) #24	NKIRAS1 (ENSBTAG00000006680) #25	UBE2E1 (ENSBTAG00000055252) #26	UBE2E2 (ENSBTAG00000047930) #27	ZNF385D (ENSBTAG00000050535) #29
Bos_a	ANCESTRAL SPECIES	31	ENSGT00940000158075	ENSGT00550000074935.y	ENSGT00390000004945.i	ENSGT00390000001491.a	ENSGT00390000010950	ENSGT01050000244968.c	ENSGT00940000157357	ENSGT00940000156591	ENSGT00390000012054.b	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00940000170546	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184.q.a ##24	ENSGT00940000159705 #25	ENSGT00940000156415.d #26	ENSGT00940000155985 #27
Wild yak	MODERN SPECIES	834															ENSBMUG00000012190	THRB (ENSBMUG00000012245) #22	NR1D2 (ENSBMUG00000012282) #23	ENSBMUG00000012295 ##24	NKIRAS1 (ENSBMUG00000012308) #25	UBE2E1 (ENSBMUG00000012326) #26	UBE2E2 (ENSBMUG00000012338) #27
Domestic yak	MODERN SPECIES	20	INTS10 (ENSBGRG00000013819)	ENSBGRG00000013807	CSGALNACT1 (ENSBGRG00000013600)	SH2D4A (ENSBGRG00000013457)	ENSBGRG00000013421	PSD3 (ENSBGRG00000012956)	ENSBGRG00000012874	LRRC3B (ENSBGRG00000012847) #17	ENSBGRG00000012829	OXSM (ENSBGRG00000012775) #18	NGLY1 (ENSBGRG00000012555) #19	TOP2B (ENSBGRG00000010489) #20	RARB (ENSBGRG00000010314) #21	ENSBGRG00000010297	ENSBGRG00000010254	THRB (ENSBGRG00000009917) #22	ENSBGRG00000009841	NR1D2 (ENSBGRG00000009728) #23	ENSBGRG00000009680 ##24	NKIRAS1 (ENSBGRG00000009616) #25	ENSBGRG00000009596	ENSBGRG00000009503 #26	ENSBGRG00000009437 #27	ENSBGRG00000009418	ENSBGRG00000009387	ZNF385D (ENSBGRG00000009302) #29	ENSBGRG00000009279	ENSBGRG00000009218	ENSBGRG00000009162	DLGAP2 (ENSBGRG00000008911)	CLN8 (ENSBGRG00000008855)
Cetacea	ANCESTRAL SPECIES	10										ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT01100000263508.A.d.e.a.b.b.b.a.a.a	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184.r.a.a.a.b ##24	ENSGT00940000159705 #25	ENSGT00940000156415.d #26	ENSGT00940000155985 #27	ENSGT00940000160242 #29	ENSGT00940000154107.a #30	ENSGT00940000154995 #31	ENSGT00390000017863 #32	ENSGT00940000154337 #33	ENSGT00530000063528.A.b #34	ENSGT00940000156869 #36	ENSGT00900000141074.l	ENSGT00390000008096.A #37	ENSGT00390000007149.l
Blue whale	MODERN SPECIES	15									ENSBMSG00010001113	LRRC3B (ENSBMSG00010001123) #17	OXSM (ENSBMSG00010001136) #18	NGLY1 (ENSBMSG00010001182) #19	ENSBMSG00010001268	TOP2B (ENSBMSG00010001287) #20	RARB (ENSBMSG00010001375) #21	THRB (ENSBMSG00010001416) #22	NR1D2 (ENSBMSG00010001451) #23	ENSBMSG00010001469	ENSBMSG00010001477	ENSBMSG00010001485 ##24	NKIRAS1 (ENSBMSG00010001499) #25	UBE2E1 (ENSBMSG00010001514) #26	UBE2E2 (ENSBMSG00010001542) #27	ENSBMSG00010001558	ZNF385D (ENSBMSG00010001563) #29	SGO1 (ENSBMSG00010001587) #30	KAT2B (ENSBMSG00010001643) #31	ENSBMSG00010001678	PP2D1 (ENSBMSG00010001686) #32	RAB5A (ENSBMSG00010001697) #33	EFHB (ENSBMSG00010001716) #34
Odontoceti	ANCESTRAL SPECIES	9										ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT01100000263508.A.d.e.a.b.b.b.a.a.a	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184.r.a.a.a.b ##24	ENSGT00940000159705 #25	ENSGT00940000156415.d #26	ENSGT00940000155985 #27	ENSGT00940000160242 #29	ENSGT00940000154107.a #30	ENSGT00940000154995 #31	ENSGT00390000017863 #32	ENSGT00940000154337 #33	ENSGT00530000063528.A.b #34	ENSGT00990000211206	ENSGT00940000156869 #36	ENSGT00940000160286.u.b	ENSGT00390000008096.A #37
Sperm whale	MODERN SPECIES		ENSPCTG00005003035	GMPS (ENSPCTG00005003000)	SLC33A1 (ENSPCTG00005002962)	C1H3orf33 (ENSPCTG00005002945)	ENSPCTG00005002938	PLCH1 (ENSPCTG00005002793)	ENSPCTG00005002721	ENSPCTG00005002714	LRRC3B (ENSPCTG00005002693) #17	OXSM (ENSPCTG00005002681) #18	NGLY1 (ENSPCTG00005002617) #19	TOP2B (ENSPCTG00005002467) #20	RARB (ENSPCTG00005002435) #21	ENSPCTG00005002423	ENSPCTG00005002407	THRB (ENSPCTG00005002356) #22	NR1D2 (ENSPCTG00005002323) #23	ENSPCTG00005002311 ##24	NKIRAS1 (ENSPCTG00005002302) #25	ENSPCTG00005002282 #26	UBE2E2 (ENSPCTG00005002250) #27	ZNF385D (ENSPCTG00005002168) #29	SGO1 (ENSPCTG00005002136) #30	KAT2B (ENSPCTG00005002112) #31	PP2D1 (ENSPCTG00005002090) #32	RAB5A (ENSPCTG00005002067) #33	EFHB (ENSPCTG00005002045) #34	ENSPCTG00005002029	KCNH8 (ENSPCTG00005002008) #36	ENSPCTG00005001988	SATB1 (ENSPCTG00005001955) #37
Odontoceti_a	ANCESTRAL SPECIES	8										ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT01100000263508.A.d.e.a.b.b.b.a.a.a	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184.r.a.a.a.b ##24	ENSGT00940000159705.e #25	ENSGT00940000156415.d #26	ENSGT00940000155985 #27	ENSGT00940000160242 #29	ENSGT00940000154107.a #30	ENSGT00940000154995 #31	ENSGT00390000017863 #32	ENSGT00940000154337 #33	ENSGT00530000063528.A.b #34	ENSGT00990000211206	ENSGT00940000156869 #36	ENSGT00940000160286.u.b	ENSGT00390000008096.A #37
Dolphin	MODERN SPECIES	4630																THRB (ENSTTRG00000001859) #22
Odontoceti_b	ANCESTRAL SPECIES	9										ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT01100000263508.A.d.e.a.b.b.b.a.a.a	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184.r.a.a.a.b ##24	ENSGT00940000159705.e.a #25	ENSGT00940000156415.d #26	ENSGT00940000155985 #27	ENSGT00940000160242 #29	ENSGT00940000154107.a #30	ENSGT00940000154995 #31	ENSGT00390000012818.o.a.a.a.a.c.b	ENSGT00390000017863 #32	ENSGT00940000154337 #33	ENSGT00530000063528.A.b #34	ENSGT00990000211206	ENSGT00940000156869 #36	ENSGT00940000160286.u.b
Vaquita	MODERN SPECIES	15								ENSPSNG00000003828	LRRC3B (ENSPSNG00000003849) #17	ENSPSNG00000003858	OXSM (ENSPSNG00000003869) #18	NGLY1 (ENSPSNG00000003908) #19	ENSPSNG00000003967	TOP2B (ENSPSNG00000003991) #20	RARB (ENSPSNG00000004020) #21	THRB (ENSPSNG00000004059) #22	NR1D2 (ENSPSNG00000004090) #23	ENSPSNG00000004101	ENSPSNG00000004110 ##24	NKIRAS1 (ENSPSNG00000004122) #25	UBE2E1 (ENSPSNG00000004169) #26	UBE2E2 (ENSPSNG00000004208) #27	ENSPSNG00000004248	ZNF385D (ENSPSNG00000004270) #29	SGO1 (ENSPSNG00000004303) #30	KAT2B (ENSPSNG00000004333) #31	ENSPSNG00000004378	PP2D1 (ENSPSNG00000004395) #32	ENSPSNG00000004424 #33	EFHB (ENSPSNG00000005780) #34	ENSPSNG00000005865
Monodontidae	ANCESTRAL SPECIES	23										ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT01000000221989	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184.r.a.a.a.b ##24	ENSGT00940000159705.e.a #25	ENSGT00940000156415.d #26	ENSGT00940000155985 #27	ENSGT00940000160242 #29	ENSGT00940000154107.a #30	ENSGT00940000154995 #31	ENSGT00390000012818.o.a.a.a.a.c.b	ENSGT00390000017863 #32	ENSGT00940000154337 #33	ENSGT00530000063528.A.b #34	ENSGT00990000211206	ENSGT00940000156869 #36	ENSGT00940000160286.u.b
Narwhal	MODERN SPECIES	297									ENSMMNG00015011395	LRRC3B (ENSMMNG00015011384) #17	OXSM (ENSMMNG00015011374) #18	NGLY1 (ENSMMNG00015011352) #19	TOP2B (ENSMMNG00015011310) #20	RARB (ENSMMNG00015011294) #21	ENSMMNG00015011281	THRB (ENSMMNG00015011253) #22	NR1D2 (ENSMMNG00015011234) #23	ENSMMNG00015011221 ##24	ENSMMNG00015011211 #25	UBE2E1 (ENSMMNG00015011188) #26	UBE2E2 (ENSMMNG00015011161) #27	ZNF385D (ENSMMNG00015011111) #29	SGO1 (ENSMMNG00015011082) #30	KAT2B (ENSMMNG00015011041) #31	PP2D1 (ENSMMNG00015011021) #32	RAB5A (ENSMMNG00015011002) #33	EFHB (ENSMMNG00015010970) #34	ENSMMNG00015010961	ENSMMNG00015010952	KCNH8 (ENSMMNG00015010929) #36	ENSMMNG00015010903
Beluga whale	MODERN SPECIES	54										LRRC3B (ENSDLEG00000008862) #17	OXSM (ENSDLEG00000008831) #18	NGLY1 (ENSDLEG00000008767) #19	TOP2B (ENSDLEG00000008704) #20	RARB (ENSDLEG00000008688) #21	ENSDLEG00000008681	THRB (ENSDLEG00000008597) #22	NR1D2 (ENSDLEG00000008573) #23	RPL15 (ENSDLEG00000008560) ##24	NKIRAS1 (ENSDLEG00000008554) #25	ENSDLEG00000008415	UBE2E2 (ENSDLEG00000008309) #27	ENSDLEG00000008256	ZNF385D (ENSDLEG00000008111) #29	ENSDLEG00000008079 #30	ENSDLEG00000008061	KAT2B (ENSDLEG00000007778) #31	PP2D1 (ENSDLEG00000007739) #32	RAB5A (ENSDLEG00000007735) #33	EFHB (ENSDLEG00000007718) #34	ENSDLEG00000007715	ENSDLEG00000007712
Laurasiatheria_b	ANCESTRAL SPECIES	2	ENSGT00940000158391 #7	ENSGT00940000157527 #8	ENSGT00940000157131.b #9	ENSGT00560000077278.b	ENSGT00940000153704.A #11	ENSGT00390000018696 #12	ENSGT00940000158728 #13	ENSGT00940000157045 #15	ENSGT00940000161037	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00910000147406	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184.q.a ##24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000155985 #27	ENSGT00940000160242 #29	ENSGT00940000154107.a #30	ENSGT00940000154995 #31	ENSGT00390000017863 #32	ENSGT00940000154337 #33	ENSGT00530000063528.A.b #34	ENSGT00940000156869 #36	ENSGT00390000008096.A #37	ENSGT00940000157121	ENSGT00940000155660.b
Laurasiatheria_c	ANCESTRAL SPECIES	2	ENSGT00950000185838	ENSGT00940000158391 #7	ENSGT00940000157527 #8	ENSGT00940000157131.b #9	ENSGT00560000077278.b	ENSGT00940000153704.A #11	ENSGT00390000018696 #12	ENSGT00940000158728 #13	ENSGT00940000157045 #15	ENSGT00940000161037	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184.q.a ##24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000155985 #27	ENSGT00940000160242 #29	ENSGT00940000154107.a #30	ENSGT00940000154995 #31	ENSGT00390000017863 #32	ENSGT00940000154337 #33	ENSGT00530000063528.A.b #34	ENSGT00940000156869 #36	ENSGT00390000008096.A #37	ENSGT00940000157121	ENSGT00940000155660.b
Equus	ANCESTRAL SPECIES	5	ENSGT00950000185838	ENSGT00940000158391 #7	ENSGT00940000157527 #8	ENSGT00940000157131.b #9	ENSGT00560000077278.b	ENSGT00940000153704.A #11	ENSGT00390000018696 #12	ENSGT00940000158728 #13	ENSGT00940000157045 #15	ENSGT00940000161037	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184.q.a ##24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000155985 #27	ENSGT00940000154107.a #30	ENSGT00940000154995 #31	ENSGT00390000017863 #32	ENSGT00940000154337 #33	ENSGT00530000063528.A.b #34	ENSGT01030000238633	ENSGT00940000156869 #36	ENSGT00390000008096.A #37	ENSGT00940000157121	ENSGT00940000155660.b
Horse	MODERN SPECIES	7	ENSECAG00000057290	GADL1 (ENSECAG00000011515) #7	TGFBR2 (ENSECAG00000015269) #8	RBMS3 (ENSECAG00000017871) #9	ZCWPW2 (ENSECAG00000019984)	AZI2 (ENSECAG00000020392) #11	CMC1 (ENSECAG00000020965) #12	EOMES (ENSECAG00000021052) #13	SLC4A7 (ENSECAG00000000767) #15	NEK10 (ENSECAG00000020927)	LRRC3B (ENSECAG00000042031) #17	OXSM (ENSECAG00000000703) #18	NGLY1 (ENSECAG00000023123) #19	TOP2B (ENSECAG00000005608) #20	RARB (ENSECAG00000016976) #21	THRB (ENSECAG00000019007) #22	NR1D2 (ENSECAG00000007646) #23	RPL15 (ENSECAG00000010157) #24	NKIRAS1 (ENSECAG00000010292) #25	UBE2E1 (ENSECAG00000011371) #26	UBE2E2 (ENSECAG00000029267) #27	ZNF385D (ENSECAG00000012368)	KAT2B (ENSECAG00000013925) #31	SGO1 (ENSECAG00000012475) #30	PP2D1 (ENSECAG00000018679) #32	RAB5A (ENSECAG00000019062) #33	EFHB (ENSECAG00000019496)	ENSECAG00000031635	KCNH8 (ENSECAG00000023098) #36	SATB1 (ENSECAG00000023585) #37	TBC1D5 (ENSECAG00000008017)
Donkey	MODERN SPECIES	13	ENSEASG00005033041	GADL1 (ENSEASG00005006169) #7	TGFBR2 (ENSEASG00005006161) #8	ENSEASG00005033576	ENSEASG00005006144	AZI2 (ENSEASG00005006140) #11	CMC1 (ENSEASG00005030717) #12	EOMES (ENSEASG00005006127) #13	SLC4A7 (ENSEASG00005006058) #15	NEK10 (ENSEASG00005006003)	LRRC3B (ENSEASG00005024092) #17	OXSM (ENSEASG00005005992) #18	NGLY1 (ENSEASG00005005991) #19	TOP2B (ENSEASG00005005985) #20	RARB (ENSEASG00005005983) #21	THRB (ENSEASG00005005979) #22	NR1D2 (ENSEASG00005005978) #23	ENSEASG00005027441 ##24	NKIRAS1 (ENSEASG00005026235) #25	UBE2E1 (ENSEASG00005005967) #26	UBE2E2 (ENSEASG00005028306) #27	ENSEASG00005005954	SGO1 (ENSEASG00005005948) #30	KAT2B (ENSEASG00005005848) #31	PP2D1 (ENSEASG00005005822) #32	RAB5A (ENSEASG00005005818) #33	EFHB (ENSEASG00005005815) #34	ENSEASG00005005811	KCNH8 (ENSEASG00005005804) #36	SATB1 (ENSEASG00005005787) #37	TBC1D5 (ENSEASG00005005775)
Chiroptera	ANCESTRAL SPECIES	19	ENSGT00940000155488	ENSGT00940000158391 #7	ENSGT00940000157527 #8	ENSGT00940000157131.b #9	ENSGT00560000077278.b	ENSGT00940000153704.A #11	ENSGT00390000018696 #12	ENSGT00940000158728 #13	ENSGT00940000157045 #15	ENSGT00940000161037	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184.q.a ##24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000155985 #27	ENSGT00940000160242 #29	ENSGT00940000154107.a #30	ENSGT00940000154995 #31	ENSGT00390000017863 #32	ENSGT00940000154337 #33	ENSGT00530000063528.A.b #34	ENSGT00940000156869 #36	ENSGT00390000008096.A #37	ENSGT00940000157121	ENSGT00940000155660.b
Megabat	MODERN SPECIES	7274																THRB (ENSPVAG00000001768) #22	NR1D2 (ENSPVAG00000001769) #23	ENSPVAG00000001771 ##24	NKIRAS1 (ENSPVAG00000001772) #25	UBE2E1 (ENSPVAG00000001773) #26
Microchiroptera	ANCESTRAL SPECIES	16	ENSGT00940000155488	ENSGT00940000158391 #7	ENSGT00940000157527 #8	ENSGT00940000157131.b #9	ENSGT00560000077278.b	ENSGT00940000153704.A #11	ENSGT00390000018696 #12	ENSGT00940000158728 #13	ENSGT00940000157045 #15	ENSGT00940000161037	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184.q.a ##24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000155985 #27	ENSGT00940000160242 #29	ENSGT00940000154107.a #30	ENSGT00940000154995 #31	ENSGT00390000017863 #32	ENSGT00940000154337 #33	ENSGT00530000063528.A.b #34	ENSGT00940000156869 #36	ENSGT00390000008096.A #37	ENSGT00940000157121	ENSGT00940000155660.b
Microbat	MODERN SPECIES	976	GADL1 (ENSMLUG00000003226) #7	TGFBR2 (ENSMLUG00000017507) #8	RBMS3 (ENSMLUG00000000659) #9	ZCWPW2 (ENSMLUG00000006496)	ENSMLUG00000000043 #11	CMC1 (ENSMLUG00000000044) #12	EOMES (ENSMLUG00000001462) #13	SLC4A7 (ENSMLUG00000001453) #15	NEK10 (ENSMLUG00000001441)	LRRC3B (ENSMLUG00000006439) #17	OXSM (ENSMLUG00000029133) #18	NGLY1 (ENSMLUG00000001704) #19	TOP2B (ENSMLUG00000001686) #20	RARB (ENSMLUG00000001683) #21	ENSMLUG00000029852	THRB (ENSMLUG00000009632) #22	NR1D2 (ENSMLUG00000013815) #23	RPL15 (ENSMLUG00000013809) #24	NKIRAS1 (ENSMLUG00000001666) #25	UBE2E1 (ENSMLUG00000014590) #26	UBE2E2 (ENSMLUG00000025144) #27	ZNF385D (ENSMLUG00000014625) #29
Greater horseshoe bat	MODERN SPECIES	8	TGFBR2 (ENSRFEG00010007495) #8	RBMS3 (ENSRFEG00010007564) #9	ZCWPW2 (ENSRFEG00010007754)	AZI2 (ENSRFEG00010007841) #11	CMC1 (ENSRFEG00010007886) #12	EOMES (ENSRFEG00010007965) #13	ENSRFEG00010008101	SLC4A7 (ENSRFEG00010008194) #15	NEK10 (ENSRFEG00010009104)	ENSRFEG00010010003	LRRC3B (ENSRFEG00010010014) #17	OXSM (ENSRFEG00010010038) #18	NGLY1 (ENSRFEG00010010150) #19	TOP2B (ENSRFEG00010010294) #20	RARB (ENSRFEG00010010823) #21	THRB (ENSRFEG00010010882) #22	NR1D2 (ENSRFEG00010011056) #23	ENSRFEG00010011144 ##24	NKIRAS1 (ENSRFEG00010011183) #25	ENSRFEG00010011222 #26	UBE2E2 (ENSRFEG00010011378) #27	ENSRFEG00010011446	ZNF385D (ENSRFEG00010011496) #29	SGO1 (ENSRFEG00010011604) #30	KAT2B (ENSRFEG00010012070) #31	PP2D1 (ENSRFEG00010012143) #32	RAB5A (ENSRFEG00010012219) #33	EFHB (ENSRFEG00010012369) #34	KCNH8 (ENSRFEG00010012438) #36	SATB1 (ENSRFEG00010012658) #37	ENSRFEG00010012725
Carnivora	ANCESTRAL SPECIES	10	ENSGT00940000158391 #7	ENSGT00940000157527 #8	ENSGT00940000157131.b #9	ENSGT00560000077278.b	ENSGT00940000153704.A #11	ENSGT00390000018696 #12	ENSGT00940000158728 #13	ENSGT00940000157045 #15	ENSGT00940000161037	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00910000147406	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184.q.a ##24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000155985 #27	ENSGT00940000160242 #29	ENSGT00940000154107.a #30	ENSGT00940000154995 #31	ENSGT00390000017863 #32	ENSGT00940000154337 #33	ENSGT00530000063528.A.b #34	ENSGT00940000156869 #36	ENSGT00940000154772.g.b	ENSGT00390000008096.A #37	ENSGT00940000157121
Felidae	ANCESTRAL SPECIES	9	ENSGT00940000155488	ENSGT00940000158391 #7	ENSGT00940000157527 #8	ENSGT00940000157131.b #9	ENSGT00560000077278.b	ENSGT00940000153704.A #11	ENSGT00390000018696 #12	ENSGT00940000158728 #13	ENSGT00940000157045 #15	ENSGT00940000161037	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00940000156809.b #22	ENSGT00390000001319.ub	ENSGT00940000155168.a.b #23	ENSGT00910000144184.q.a ##24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000155985 #27	ENSGT00940000160242 #29	ENSGT00940000154107.a #30	ENSGT00940000154995 #31	ENSGT00390000017863 #32	ENSGT00940000154337 #33	ENSGT00530000063528.A.b #34	ENSGT00940000156869 #36	ENSGT00940000154772.g.b.a.a	ENSGT00390000008096.A #37
Panthera	ANCESTRAL SPECIES	12	ENSGT00940000155488	ENSGT00940000158391 #7	ENSGT00940000157527 #8	ENSGT00940000157131.b #9	ENSGT00560000077278.b	ENSGT00940000153704.A #11	ENSGT00390000018696 #12	ENSGT00940000158728 #13	ENSGT00940000157045 #15	ENSGT00940000161037	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00940000156809.b #22	ENSGT00390000001319.ub	ENSGT00940000155168.a.b #23	ENSGT00910000144184.q.a ##24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000155985 #27	ENSGT00940000160242 #29	ENSGT00940000154107.a #30	ENSGT00940000154995 #31	ENSGT00390000017863 #32	ENSGT00940000154337 #33	ENSGT00530000063528.A.b #34	ENSGT00940000156869 #36	ENSGT00940000154772.g.b.a.a	ENSGT00390000008096.A #37
Panthera_a	ANCESTRAL SPECIES	17	ENSGT00940000155488	ENSGT00940000158391 #7	ENSGT00940000157527 #8	ENSGT00940000157131.b #9	ENSGT00560000077278.b	ENSGT00940000153704.A #11	ENSGT00390000018696 #12	ENSGT00940000158728 #13	ENSGT00940000157045 #15	ENSGT00940000161037	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00940000156809.b #22	ENSGT00390000001319.ub	ENSGT00940000155168.a.b #23	ENSGT00910000144184.q.a ##24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000155985 #27	ENSGT00940000160242 #29	ENSGT00940000154107.a #30	ENSGT00940000154995 #31	ENSGT00390000017863 #32	ENSGT00940000154337 #33	ENSGT00530000063528.A.b #34	ENSGT00940000156869 #36	ENSGT00940000154772.g.b.a.a	ENSGT00390000008096.A #37
lion	MODERN SPECIES	9	STT3B (ENSPLOG00000004948)	GADL1 (ENSPLOG00000004989) #7	TGFBR2 (ENSPLOG00000005040) #8	RBMS3 (ENSPLOG00000005220) #9	ZCWPW2 (ENSPLOG00000005411)	AZI2 (ENSPLOG00000005445) #11	ENSPLOG00000005495 #12	EOMES (ENSPLOG00000005549) #13	SLC4A7 (ENSPLOG00000005792) #15	NEK10 (ENSPLOG00000006536)	LRRC3B (ENSPLOG00000006754) #17	OXSM (ENSPLOG00000006780) #18	NGLY1 (ENSPLOG00000006843) #19	TOP2B (ENSPLOG00000006966) #20	RARB (ENSPLOG00000007152) #21	THRB (ENSPLOG00000007246) #22	ENSPLOG00000007296	NR1D2 (ENSPLOG00000007313) #23	ENSPLOG00000007334 ##24	NKIRAS1 (ENSPLOG00000007358) #25	UBE2E1 (ENSPLOG00000007394) #26	UBE2E2 (ENSPLOG00000007465) #27	ZNF385D (ENSPLOG00000007520) #29	SGO1 (ENSPLOG00000007578) #30	KAT2B (ENSPLOG00000007809) #31	ENSPLOG00000008548	PP2D1 (ENSPLOG00000008568) #32	RAB5A (ENSPLOG00000008606) #33	EFHB (ENSPLOG00000008658) #34	KCNH8 (ENSPLOG00000008800) #36	SATB1 (ENSPLOG00000008905) #37
leopard	MODERN SPECIES	92	GADL1 (ENSPPRG00000004166) #7	TGFBR2 (ENSPPRG00000003360) #8	RBMS3 (ENSPPRG00000002761) #9	ZCWPW2 (ENSPPRG00000023818)	AZI2 (ENSPPRG00000023916) #11	CMC1 (ENSPPRG00000024446) #12	EOMES (ENSPPRG00000024598) #13	SLC4A7 (ENSPPRG00000024766) #15	NEK10 (ENSPPRG00000007741)	LRRC3B (ENSPPRG00000016741) #17	OXSM (ENSPPRG00000006213) #18	NGLY1 (ENSPPRG00000005748) #19	TOP2B (ENSPPRG00000004079) #20	RARB (ENSPPRG00000002709) #21	ENSPPRG00000002152	THRB (ENSPPRG00000001996) #22	ENSPPRG00000016349	NR1D2 (ENSPPRG00000001625) #23	ENSPPRG00000001518 ##24	NKIRAS1 (ENSPPRG00000001077) #25	UBE2E1 (ENSPPRG00000000551) #26	ENSPPRG00000000121 #27
Tiger	MODERN SPECIES	569				RBMS3 (ENSPTIG00000011568) #9	ZCWPW2 (ENSPTIG00000015208)	AZI2 (ENSPTIG00000016279) #11	CMC1 (ENSPTIG00000016951) #12	EOMES (ENSPTIG00000017642) #13	SLC4A7 (ENSPTIG00000018124) #15	NEK10 (ENSPTIG00000014024)	LRRC3B (ENSPTIG00000000834) #17	OXSM (ENSPTIG00000020437) #18	NGLY1 (ENSPTIG00000021711) #19	TOP2B (ENSPTIG00000006585) #20	RARB (ENSPTIG00000014154) #21	THRB (ENSPTIG00000015010) #22	ENSPTIG00000001284	NR1D2 (ENSPTIG00000017305) #23	RPL15 (ENSPTIG00000017965) ##24	NKIRAS1 (ENSPTIG00000019470) #25	UBE2E1 (ENSPTIG00000005810) #26	UBE2E2 (ENSPTIG00000007932) #27	ZNF385D (ENSPTIG00000009597) #29	ENSPTIG00000016658 #30	KAT2B (ENSPTIG00000018853) #31	ENSPTIG00000021245	PP2D1 (ENSPTIG00000021598) #32	RAB5A (ENSPTIG00000021685) #33	EFHB (ENSPTIG00000021898) #34	KCNH8 (ENSPTIG00000021965) #36
Cat	MODERN SPECIES	240	CMC1 (ENSFCAG00000031975) #12	EOMES (ENSFCAG00000003602) #13	SLC4A7 (ENSFCAG00000024267) #15	ENSFCAG00000051023	ENSFCAG00000046845	ENSFCAG00000052400	NEK10 (ENSFCAG00000045859)	ENSFCAG00000048184	ENSFCAG00000049561	OXSM (ENSFCAG00000041445) #18	NGLY1 (ENSFCAG00000024202) #19	ENSFCAG00000034055	TOP2B (ENSFCAG00000031328) #20	RARB (ENSFCAG00000010409) #21	ENSFCAG00000047352	THRB (ENSFCAG00000022754) #22	ENSFCAG00000026441	NR1D2 (ENSFCAG00000027540) #23	RPL15 (ENSFCAG00000026237) ##24	NKIRAS1 (ENSFCAG00000008700) #25	UBE2E1 (ENSFCAG00000035590) #26	UBE2E2 (ENSFCAG00000007748) #27	ZNF385D (ENSFCAG00000027175) #29	SGO1 (ENSFCAG00000035315) #30	ENSFCAG00000033105	KAT2B (ENSFCAG00000004458) #31	PP2D1 (ENSFCAG00000040097) #32	RAB5A (ENSFCAG00000039795) #33	EFHB (ENSFCAG00000004454) #34	KCNH8 (ENSFCAG00000012306) #36	ENSFCAG00000022406
Caniformia	ANCESTRAL SPECIES		ENSGT00940000158391 #7	ENSGT00940000157527 #8	ENSGT00940000157131.b #9	ENSGT00560000077278.b	ENSGT00940000153704.A #11	ENSGT00390000018696 #12	ENSGT00940000158728 #13	ENSGT00940000157045 #15	ENSGT00940000161037	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00910000147406	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184.q.a ##24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000155985 #27	ENSGT00940000160242 #29	ENSGT00940000154107.a #30	ENSGT00940000154995 #31	ENSGT00390000017863 #32	ENSGT00940000154337 #33	ENSGT00530000063528.A.b #34	ENSGT00940000156869 #36	ENSGT00940000154772.g.b	ENSGT00390000008096.A #37	ENSGT00940000157121
Canidae	ANCESTRAL SPECIES	24	ENSGT00950000185838	ENSGT00940000158391 #7	ENSGT00940000157527 #8	ENSGT00940000157131.b #9	ENSGT00560000077278.b	ENSGT00940000153704.A #11	ENSGT00390000018696 #12	ENSGT00940000158728 #13	ENSGT00940000157045 #15	ENSGT00940000161037	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184.q.a ##24	ENSGT00940000159705 #25	ENSGT00940000156415.h #26	ENSGT00940000155985.eb #27	ENSGT00940000160242 #29	ENSGT00940000154107.a #30	ENSGT00940000154995 #31	ENSGT00390000017863 #32	ENSGT00940000154337 #33	ENSGT00530000063528.A.b #34	ENSGT00940000156869 #36	ENSGT00940000154772.g.b	ENSGT00390000008096.A #37	ENSGT00940000157121
Red fox	MODERN SPECIES	58					ZCWPW2 (ENSVVUG00000026164)	AZI2 (ENSVVUG00000026165) #11	CMC1 (ENSVVUG00000026166) #12	EOMES (ENSVVUG00000026168) #13	SLC4A7 (ENSVVUG00000026186) #15	NEK10 (ENSVVUG00000028110)	LRRC3B (ENSVVUG00000028164) #17	OXSM (ENSVVUG00000028172) #18	NGLY1 (ENSVVUG00000028175) #19	TOP2B (ENSVVUG00000028178) #20	RARB (ENSVVUG00000028201) #21	THRB (ENSVVUG00000028211) #22	NR1D2 (ENSVVUG00000028229) #23	RPL15 (ENSVVUG00000028235) ##24	NKIRAS1 (ENSVVUG00000028237) #25	UBE2E1 (ENSVVUG00000028240) #26	UBE2E2 (ENSVVUG00000000076) #27	ENSVVUG00000000087	ENSVVUG00000000186 #27	ZNF385D (ENSVVUG00000000306) #29	ENSVVUG00000000381	SGO1 (ENSVVUG00000000434) #30	KAT2B (ENSVVUG00000000458) #31	PP2D1 (ENSVVUG00000000482) #32	RAB5A (ENSVVUG00000000489) #33	EFHB (ENSVVUG00000000504) #34	KCNH8 (ENSVVUG00000000541) #36
Canis_lupus	ANCESTRAL SPECIES	27	ENSGT00940000155488	ENSGT00940000158391 #7	ENSGT00940000157527 #8	ENSGT00940000157131.b #9	ENSGT00560000077278.b	ENSGT00940000153704.A #11	ENSGT00390000018696 #12	ENSGT00940000158728 #13	ENSGT00940000157045 #15	ENSGT00940000161037	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184.q.b.a #24	ENSGT00940000159705 #25	ENSGT00940000156415.h #26	ENSGT00940000155985.eb #27	ENSGT00940000160242 #29	ENSGT00940000154107.a #30	ENSGT00940000154995 #31	ENSGT00390000017863 #32	ENSGT00940000154337 #33	ENSGT00530000063528.A.b #34	ENSGT00940000156869 #36	ENSGT00940000154772.g.b	ENSGT00390000008096.A #37	ENSGT00940000157121
Dog	MODERN SPECIES	15	GADL1 (ENSCAFG00845022546) #7	TGFBR2 (ENSCAFG00845022794) #8	RBMS3 (ENSCAFG00845023114) #9	ENSCAFG00845023756	ZCWPW2 (ENSCAFG00845023847)	AZI2 (ENSCAFG00845024121) #11	CMC1 (ENSCAFG00845024206) #12	EOMES (ENSCAFG00845024300) #13	SLC4A7 (ENSCAFG00845024476) #15	NEK10 (ENSCAFG00845025416)	LRRC3B (ENSCAFG00845026277) #17	OXSM (ENSCAFG00845026614) #18	NGLY1 (ENSCAFG00845026707) #19	TOP2B (ENSCAFG00845027039) #20	RARB (ENSCAFG00845019290) #21	THRB (ENSCAFG00845019516) #22	NR1D2 (ENSCAFG00845019679) #23	RPL15 (ENSCAFG00845019729) ##24	NKIRAS1 (ENSCAFG00845019798) #25	ENSCAFG00845019901 #26	UBE2E2 (ENSCAFG00845020072) #27	ZNF385D (ENSCAFG00845020268) #29	SGO1 (ENSCAFG00845020400) #30	KAT2B (ENSCAFG00845020587) #31	PP2D1 (ENSCAFG00845021158) #32	RAB5A (ENSCAFG00845021204) #33	EFHB (ENSCAFG00845021296) #34	KCNH8 (ENSCAFG00845021492) #36	ENSCAFG00845021600	SATB1 (ENSCAFG00845021681) #37	TBC1D5 (ENSCAFG00845021936)
Dingo	MODERN SPECIES	326	GADL1 (ENSCAFG00020025004) #7	TGFBR2 (ENSCAFG00020025002) #8	RBMS3 (ENSCAFG00020024980) #9	ZCWPW2 (ENSCAFG00020024968)	AZI2 (ENSCAFG00020024964) #11	CMC1 (ENSCAFG00020024962) #12	EOMES (ENSCAFG00020024961) #13	SLC4A7 (ENSCAFG00020024818) #15	NEK10 (ENSCAFG00020024785)	LRRC3B (ENSCAFG00020024780) #17	ENSCAFG00020024778	OXSM (ENSCAFG00020024777) #18	NGLY1 (ENSCAFG00020024772) #19	TOP2B (ENSCAFG00020024760) #20	RARB (ENSCAFG00020024755) #21	THRB (ENSCAFG00020024747) #22	NR1D2 (ENSCAFG00020024743) #23	RPL15 (ENSCAFG00020024742) #24	NKIRAS1 (ENSCAFG00020024741) #25	ENSCAFG00020024740 #26	ENSCAFG00020024731	ENSCAFG00020024729 #27
Caniformia_b	ANCESTRAL SPECIES		ENSGT00940000158391 #7	ENSGT00940000157527 #8	ENSGT00940000157131.b #9	ENSGT00560000077278.b	ENSGT00940000153704.A #11	ENSGT00390000018696 #12	ENSGT00940000158728 #13	ENSGT00940000157045 #15	ENSGT00940000161037	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00910000147406	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184.q.a ##24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000155985 #27	ENSGT00940000160242 #29	ENSGT00940000154107.a #30	ENSGT00940000154995 #31	ENSGT00390000017863 #32	ENSGT00940000154337 #33	ENSGT00530000063528.A.b #34	ENSGT00940000156869 #36	ENSGT00940000154772.g.b	ENSGT00390000008096.A #37	ENSGT00940000157121
Ursidae	ANCESTRAL SPECIES	1	ENSGT00940000157527 #8	ENSGT00940000157131.b #9	ENSGT00940000165819	ENSGT00560000077278.b	ENSGT00940000153704.A #11	ENSGT00390000018696 #12	ENSGT00940000158728 #13	ENSGT00940000157045 #15	ENSGT00940000161037	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00910000147406	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184.q.a ##24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000155985 #27	ENSGT00940000160242 #29	ENSGT00940000154107.a #30	ENSGT00940000154995 #31	ENSGT00390000017863 #32	ENSGT00940000154337 #33	ENSGT00530000063528.A.b #34	ENSGT00940000156869 #36	ENSGT00940000154772.g.b	ENSGT00390000008096.A #37	ENSGT00940000157121
Giant Panda	MODERN SPECIES	16	ENSAMEG00000026001	RBMS3 (ENSAMEG00000005947) #9	ZCWPW2 (ENSAMEG00000025576)	AZI2 (ENSAMEG00000012705) #11	CMC1 (ENSAMEG00000030001) #12	ENSAMEG00000023592	EOMES (ENSAMEG00000012731) #13	ENSAMEG00000029652	SLC4A7 (ENSAMEG00000012751) #15	NEK10 (ENSAMEG00000028702)	LRRC3B (ENSAMEG00000020089) #17	OXSM (ENSAMEG00000000585) #18	NGLY1 (ENSAMEG00000000588) #19	TOP2B (ENSAMEG00000000618) #20	RARB (ENSAMEG00000000740) #21	THRB (ENSAMEG00000017962) #22	NR1D2 (ENSAMEG00000000517) #23	RPL15 (ENSAMEG00000003497) ##24	NKIRAS1 (ENSAMEG00000003508) #25	UBE2E1 (ENSAMEG00000003515) #26	UBE2E2 (ENSAMEG00000003528) #27	ZNF385D (ENSAMEG00000009354) #29	ENSAMEG00000025071	SGO1 (ENSAMEG00000000913) #30	KAT2B (ENSAMEG00000000922) #31	PP2D1 (ENSAMEG00000000952) #32	RAB5A (ENSAMEG00000000954) #33	EFHB (ENSAMEG00000000973) #34	KCNH8 (ENSAMEG00000007435) #36	SATB1 (ENSAMEG00000009099) #37	ENSAMEG00000024183
Ursus	ANCESTRAL SPECIES	14							ENSGT00940000157045 #15	ENSGT00940000161037	ENSGT00940000157780 #17	ENSGT00390000016988.a.a.a.a.a.b	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00910000147406	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184.q.a ##24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000155985 #27	ENSGT00940000160242 #29	ENSGT00940000154107.a #30	ENSGT00940000154995 #31	ENSGT00390000017863 #32	ENSGT00940000154337 #33	ENSGT00530000063528.A.b #34	ENSGT00940000156869 #36	ENSGT00940000154772.g.b	ENSGT00390000008096.A #37	ENSGT00940000157121
American black bear	MODERN SPECIES	4451																THRB (ENSUAMG00000021272) #22
Polar bear	MODERN SPECIES	112	ZCWPW2 (ENSUMAG00000000102)	AZI2 (ENSUMAG00000023259) #11	CMC1 (ENSUMAG00000023256) #12	EOMES (ENSUMAG00000023233) #13	ENSUMAG00000023231	ENSUMAG00000023229	SLC4A7 (ENSUMAG00000020249) #15	NEK10 (ENSUMAG00000019592)	LRRC3B (ENSUMAG00000019584) #17	ENSUMAG00000019573	OXSM (ENSUMAG00000019570) #18	NGLY1 (ENSUMAG00000019408) #19	TOP2B (ENSUMAG00000018803) #20	RARB (ENSUMAG00000018701) #21	ENSUMAG00000018691	THRB (ENSUMAG00000018675) #22	NR1D2 (ENSUMAG00000018615) #23	RPL15 (ENSUMAG00000018604) #24	NKIRAS1 (ENSUMAG00000018603) #25	UBE2E1 (ENSUMAG00000018601) #26	UBE2E2 (ENSUMAG00000018586) #27	ENSUMAG00000018560 #27	ZNF385D (ENSUMAG00000018529) #29	SGO1 (ENSUMAG00000018474) #30	KAT2B (ENSUMAG00000018349) #31	PP2D1 (ENSUMAG00000018320) #32	RAB5A (ENSUMAG00000018295) #33	EFHB (ENSUMAG00000018281) #34	KCNH8 (ENSUMAG00000018259) #36	ENSUMAG00000018223	SATB1 (ENSUMAG00000018158) #37
Mustelinae	ANCESTRAL SPECIES	101	ENSGT00940000155488	ENSGT00940000158391 #7	ENSGT00940000157527 #8	ENSGT00940000157131.b #9	ENSGT00560000077278.b	ENSGT00940000153704.A #11	ENSGT00390000018696 #12	ENSGT00940000158728 #13	ENSGT00940000157045 #15	ENSGT00940000161037	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184.q.a ##24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000155985 #27	ENSGT00940000160242 #29
American mink	MODERN SPECIES	213											ENSNVIG00000018525	OXSM (ENSNVIG00000018539) #18	NGLY1 (ENSNVIG00000018552) #19	TOP2B (ENSNVIG00000018592) #20	RARB (ENSNVIG00000018651) #21	THRB (ENSNVIG00000018674) #22	NR1D2 (ENSNVIG00000018847) #23	RPL15 (ENSNVIG00000018858) ##24	KBRS1 (ENSNVIG00000018879) #25	UBE2E1 (ENSNVIG00000018904) #26	UBE2E2 (ENSNVIG00000018958) #27
Ferret	MODERN SPECIES	205	GADL1 (ENSMPUG00000011940) #7	TGFBR2 (ENSMPUG00000011952) #8	RBMS3 (ENSMPUG00000011956) #9	ZCWPW2 (ENSMPUG00000011964)	AZI2 (ENSMPUG00000011970) #11	EOMES (ENSMPUG00000011981) #13	SLC4A7 (ENSMPUG00000012059) #15	NEK10 (ENSMPUG00000012071)	LRRC3B (ENSMPUG00000019328) #17	OXSM (ENSMPUG00000012103) #18	NGLY1 (ENSMPUG00000012107) #19	TOP2B (ENSMPUG00000012113) #20	RARB (ENSMPUG00000012126) #21	ENSMPUG00000012129	ENSMPUG00000012132	THRB (ENSMPUG00000012135) #22	NR1D2 (ENSMPUG00000012137) #23	ENSMPUG00000012146	ENSMPUG00000012148 ##24	NKIRAS1 (ENSMPUG00000012152) #25	UBE2E1 (ENSMPUG00000012175) #26	UBE2E2 (ENSMPUG00000012178) #27	ENSMPUG00000012183 #27	ZNF385D (ENSMPUG00000012185) #29
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00940000156809.b #22
Common shrew	MODERN SPECIES	3577																THRB (ENSSARG00000013590) #22
Hedgehog	MODERN SPECIES	4633																THRB (ENSEEUG00000005916) #22
Atlantogenata	ANCESTRAL SPECIES	58	ENSGT00940000155488	ENSGT00940000158391 #7	ENSGT00940000157527 #8	ENSGT00940000157131.b #9	ENSGT00560000077278.b	ENSGT00940000153704.A #11	ENSGT00390000018696 #12	ENSGT00940000158728 #13	ENSGT00940000157045 #15	ENSGT00940000161037	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184.q.b #24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000155985 #27	ENSGT00940000154107.a #30	ENSGT00940000154995 #31	ENSGT00390000017863 #32	ENSGT00940000154337 #33	ENSGT00530000063528.A.b #34	ENSGT00940000169676 #35	ENSGT00940000156869 #36	ENSGT00390000008096.A #37	ENSGT00940000157121	ENSGT00940000155660.b
Xenarthra	ANCESTRAL SPECIES	984																ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184.q.b #24	ENSGT00940000159705 #25	ENSGT00940000156415 #26
Sloth	MODERN SPECIES	4094																THRB (ENSCHOG00000000987) #22
Armadillo	MODERN SPECIES	1324																THRB (ENSDNOG00000042269) #22	ENSDNOG00000036140	NR1D2 (ENSDNOG00000003878) #23	RPL15 (ENSDNOG00000048927) #24	NKIRAS1 (ENSDNOG00000002690) #25	UBE2E1 (ENSDNOG00000036147) #26	ENSDNOG00000039540	UBE2E2 (ENSDNOG00000005448) #27	ENSDNOG00000036582 #27	ENSDNOG00000036736
Afrotheria	ANCESTRAL SPECIES	70	ENSGT00940000155488	ENSGT00940000158391 #7	ENSGT00940000157527 #8	ENSGT00940000157131.b #9	ENSGT00560000077278.b	ENSGT00940000153704.A #11	ENSGT00390000018696 #12	ENSGT00940000158728 #13	ENSGT00940000157045 #15	ENSGT00940000161037	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184.q.a ##24	ENSGT00910000144184.q.b #24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000155985 #27	ENSGT00940000154107.a #30	ENSGT00940000154995 #31	ENSGT00390000017863 #32	ENSGT00940000154337 #33	ENSGT00530000063528.A.b #34	ENSGT00940000169676 #35	ENSGT00940000156869 #36	ENSGT00390000008096.A #37	ENSGT00940000157121
Afrotheria_a	ANCESTRAL SPECIES	67	ENSGT00940000155488	ENSGT00940000158391 #7	ENSGT00940000157527 #8	ENSGT00940000157131.b #9	ENSGT00560000077278.b	ENSGT00940000153704.A #11	ENSGT00390000018696 #12	ENSGT00940000158728 #13	ENSGT00940000157045 #15	ENSGT00940000161037	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184.q.b #24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000155985 #27	ENSGT00940000154107.a #30	ENSGT00940000154995 #31	ENSGT00390000017863 #32	ENSGT00940000154337 #33	ENSGT00530000063528.A.b #34	ENSGT00940000169676 #35	ENSGT00940000156869 #36	ENSGT00390000008096.A #37	ENSGT00940000157121	ENSGT00940000155660.b
Elephant	MODERN SPECIES	348	STT3B (ENSLAFG00000002337)	GADL1 (ENSLAFG00000003788) #7	TGFBR2 (ENSLAFG00000003785) #8	RBMS3 (ENSLAFG00000000354) #9	ENSLAFG00000026663	ZCWPW2 (ENSLAFG00000006754)	ENSLAFG00000008538 #11	EOMES (ENSLAFG00000004142) #13	SLC4A7 (ENSLAFG00000002273) #15	NEK10 (ENSLAFG00000007538)	LRRC3B (ENSLAFG00000004161) #17	OXSM (ENSLAFG00000013673) #18	NGLY1 (ENSLAFG00000013667) #19	TOP2B (ENSLAFG00000015837) #20	RARB (ENSLAFG00000015824) #21	THRB (ENSLAFG00000013921) #22	NR1D2 (ENSLAFG00000011851) #23	RPL15 (ENSLAFG00000004155) #24	NKIRAS1 (ENSLAFG00000004153) #25	UBE2E1 (ENSLAFG00000004150) #26	UBE2E2 (ENSLAFG00000010500) #27	SGO1 (ENSLAFG00000032470) #30	KAT2B (ENSLAFG00000006300) #31	PP2D1 (ENSLAFG00000008322) #32	RAB5A (ENSLAFG00000008321) #33	EFHB (ENSLAFG00000008317) #34	ENSLAFG00000028706 #35	KCNH8 (ENSLAFG00000000251) #36	SATB1 (ENSLAFG00000009015) #37	ENSLAFG00000028726	ENSLAFG00000005895
Hyrax	MODERN SPECIES	3753																THRB (ENSPCAG00000012625) #22
Tenrec	MODERN SPECIES	4483																THRB (ENSETEG00000016652) #22
Marsupialia	ANCESTRAL SPECIES	4	ENSGT00940000155488	ENSGT00940000158391 #7	ENSGT00940000157527 #8	ENSGT00940000157131.b #9	ENSGT00560000077278.b	ENSGT00940000153704.A #11	ENSGT00390000018696 #12	ENSGT00940000158728 #13	ENSGT00940000157045 #15	ENSGT00940000161037	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184.q.a ##24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000155985.nb.a #27	ENSGT00940000155985.ob #27	ENSGT00940000160242 #29	ENSGT00940000154107.a #30	ENSGT00940000154995 #31	ENSGT00390000017863 #32	ENSGT00940000154337 #33	ENSGT00530000063528.A.b #34	ENSGT00940000156869 #36	ENSGT00390000008096.D ##37	ENSGT00940000157121
Opossum	MODERN SPECIES	7	ZCWPW2 (ENSMODG00000023968)	AZI2 (ENSMODG00000015075) #11	CMC1 (ENSMODG00000015062) #12	ENSMODG00000015057 #13	SLC4A7 (ENSMODG00000015030) #15	ENSMODG00000037651	NEK10 (ENSMODG00000014978)	ENSMODG00000023987	ENSMODG00000049805	ENSMODG00000014965	LRRC3B (ENSMODG00000023990) #17	OXSM (ENSMODG00000036715) #18	NGLY1 (ENSMODG00000014961) #19	TOP2B (ENSMODG00000014954) #20	RARB (ENSMODG00000014926) #21	THRB (ENSMODG00000014903) #22	NR1D2 (ENSMODG00000014892) #23	RPL15 (ENSMODG00000014880) #24	NKIRAS1 (ENSMODG00000014879) #25	UBE2E1 (ENSMODG00000014876) #26	ENSMODG00000038352	UBE2E2 (ENSMODG00000014872) #27	ENSMODG00000041263 #27	ENSMODG00000046748	ENSMODG00000043390	ZNF385D (ENSMODG00000014827) #29	ENSMODG00000024004	ENSMODG00000027500	ENSMODG00000048186	ENSMODG00000014812 #30	KAT2B (ENSMODG00000014806) #31
Marsupialia_b	ANCESTRAL SPECIES	10	ENSGT00940000155488	ENSGT00940000158391 #7	ENSGT00940000157527 #8	ENSGT00940000157131.b #9	ENSGT00560000077278.b	ENSGT00940000153704.A #11	ENSGT00390000018696 #12	ENSGT00940000158728 #13	ENSGT00940000157045 #15	ENSGT00940000161037	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184.q.a ##24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000155985.nb.a #27	ENSGT00940000155985.ob #27	ENSGT00940000160242 #29	ENSGT00940000154107.a #30	ENSGT00940000154995 #31	ENSGT00390000017863 #32	ENSGT00940000154337 #33	ENSGT00530000063528.A.b #34	ENSGT00940000156869 #36	ENSGT00390000008096.D ##37	ENSGT00940000157121
Tasmanian devil	MODERN SPECIES	4	TGFBR2 (ENSSHAG00000020646) #8	RBMS3 (ENSSHAG00000002411) #9	ENSSHAG00000030228	AZI2 (ENSSHAG00000017983) #11	CMC1 (ENSSHAG00000022363) #12	ENSSHAG00000029977	EOMES (ENSSHAG00000017378) #13	NEK10 (ENSSHAG00000024613)	SLC4A7 (ENSSHAG00000016885) #15	ENSSHAG00000028727	LRRC3B (ENSSHAG00000026399) #17	OXSM (ENSSHAG00000021242) #18	NGLY1 (ENSSHAG00000011594) #19	TOP2B (ENSSHAG00000010805) #20	RARB (ENSSHAG00000009801) #21	THRB (ENSSHAG00000004159) #22	NR1D2 (ENSSHAG00000001369) #23	ENSSHAG00000031281 ##24	ENSSHAG00000023165 #25	UBE2E1 (ENSSHAG00000025127) #26	UBE2E2 (ENSSHAG00000015850) #27	ENSSHAG00000026012	ENSSHAG00000008910 #30	KAT2B (ENSSHAG00000008162) #31	ENSSHAG00000007207 #32	RAB5A (ENSSHAG00000029470) #33	ENSSHAG00000006023 #34	KCNH8 (ENSSHAG00000008165) #36	ENSSHAG00000015368 ##37	TBC1D5 (ENSSHAG00000011231)	PLCL2 (ENSSHAG00000007849)
Diprotodontia	ANCESTRAL SPECIES	18	ENSGT00940000155488	ENSGT00940000158391 #7	ENSGT00940000157527 #8	ENSGT00940000157131.b #9	ENSGT00560000077278.b	ENSGT00940000153704.A #11	ENSGT00390000018696 #12	ENSGT00940000158728 #13	ENSGT00940000157045 #15	ENSGT00940000161037	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184.q.a ##24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000155985.nb.a #27	ENSGT00940000155985.ob #27	ENSGT00940000160242 #29	ENSGT00940000154107.a #30	ENSGT00940000154995 #31	ENSGT00390000017863 #32	ENSGT00940000154337 #33	ENSGT00530000063528.A.b #34	ENSGT00940000156869 #36	ENSGT00390000008096.D ##37	ENSGT00940000157121
Wallaby	MODERN SPECIES	5711																THRB (ENSMEUG00000010735) #22
Diprotodontia_a	ANCESTRAL SPECIES	20	ENSGT00940000155488	ENSGT00940000158391 #7	ENSGT00940000157527 #8	ENSGT00940000157131.b #9	ENSGT00560000077278.b	ENSGT00940000153704.A #11	ENSGT00390000018696 #12	ENSGT00940000158728 #13	ENSGT00940000157045 #15	ENSGT00940000161037	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184.q.a ##24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000155985.nb.a #27	ENSGT00940000155985.ob #27	ENSGT00940000160242 #29	ENSGT00940000154107.a #30	ENSGT00940000154995 #31	ENSGT00390000017863 #32	ENSGT00940000154337 #33	ENSGT00530000063528.A.b #34	ENSGT00940000156869 #36	ENSGT00390000008096.D ##37	ENSGT00940000157121
Common wonbat	MODERN SPECIES	1036	ENSVURG00010022542	ZCWPW2 (ENSVURG00010022538)	AZI2 (ENSVURG00010022524) #11	CMC1 (ENSVURG00010022520) #12	EOMES (ENSVURG00010022512) #13	SLC4A7 (ENSVURG00010022496) #15	NEK10 (ENSVURG00010022482)	ENSVURG00010022479	LRRC3B (ENSVURG00010022478) #17	ENSVURG00010022477	OXSM (ENSVURG00010022472) #18	NGLY1 (ENSVURG00010022464) #19	TOP2B (ENSVURG00010022442) #20	RARB (ENSVURG00010022439) #21	ENSVURG00010022436	THRB (ENSVURG00010022429) #22	NR1D2 (ENSVURG00010022419) #23	ENSVURG00010022414 ##24	NKIRAS1 (ENSVURG00010022410) #25	UBE2E1 (ENSVURG00010022407) #26	UBE2E2 (ENSVURG00010022402) #27	ENSVURG00010022399 #27	ZNF385D (ENSVURG00010022375) #29	ENSVURG00010022364 #30	KAT2B (ENSVURG00010022260) #31	ENSVURG00010022246 #32	RAB5A (ENSVURG00010022243) #33	EFHB (ENSVURG00010022239) #34	KCNH8 (ENSVURG00010022228) #36	ENSVURG00010022223 ##37	TBC1D5 (ENSVURG00010022214)
koala	MODERN SPECIES	212											ENSPCIG00000010937	ENSPCIG00000036789	NGLY1 (ENSPCIG00000010936) #19	TOP2B (ENSPCIG00000008674) #20	RARB (ENSPCIG00000008578) #21	THRB (ENSPCIG00000026110) #22	NR1D2 (ENSPCIG00000026108) #23	ENSPCIG00000026107 ##24	NKIRAS1 (ENSPCIG00000026106) #25	UBE2E1 (ENSPCIG00000026105) #26	ENSPCIG00000026104	ENSPCIG00000023933 #27	ENSPCIG00000023932 #27	ENSPCIG00000023929	ZNF385D (ENSPCIG00000035897) #29
Platypus	MODERN SPECIES	19	OSBPL10 (ENSOANG00000002277)	STT3B (ENSOANG00000002278)	GADL1 (ENSOANG00000010531) #7	TGFBR2 (ENSOANG00000010530) #8	RBMS3 (ENSOANG00000010529) #9	ZCWPW2 (ENSOANG00000028631)	AZI2 (ENSOANG00000041855) #11	CMC1 (ENSOANG00000047320) #12	EOMES (ENSOANG00000046217) #13	SLC4A7 (ENSOANG00000002769) #15	NEK10 (ENSOANG00000002766)	OXSM (ENSOANG00000037429) #18	NGLY1 (ENSOANG00000012234) #19	TOP2B (ENSOANG00000012235) #20	RARB (ENSOANG00000046457) #21	THRB (ENSOANG00000012237) #22	RPL15 (ENSOANG00000045456) #23	NKIRAS1 (ENSOANG00000039878) #25	UBE2E1 (ENSOANG00000044336) #26	UBE2E2 (ENSOANG00000021185) #27	ENSOANG00000041958 #27	ENSOANG00000048187	ZNF385D (ENSOANG00000004985) #29	ENSOANG00000004986 #30	KAT2B (ENSOANG00000004987) #31	ENSOANG00000004988 #32	RAB5A (ENSOANG00000004989) #33	KCNH8 (ENSOANG00000004990) #36	ENSOANG00000004992 ##37	TBC1D5 (ENSOANG00000004993)	PLCL2 (ENSOANG00000011166)
Sauria	ANCESTRAL SPECIES		ENSGT00940000157527 #8	ENSGT00940000157131.b #9	ENSGT00560000077278.b	ENSGT00940000153704.A #11	ENSGT00390000018696 #12	ENSGT00940000166753	ENSGT00940000158728 #13	ENSGT00940000157045 #15	ENSGT00940000161037	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00960000189415	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184.r ##24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000155985 #27	ENSGT00940000155611.s	ENSGT00730000111148	ENSGT00940000164697.a	ENSGT00940000169289	ENSGT00440000038972	ENSGT01100000263523.A	ENSGT01100000263532.A.a.a.a.b.d	ENSGT01100000263532.B	ENSGT00940000177542	ENSGT00940000177836
Archelosauria	ANCESTRAL SPECIES	6	ENSGT00940000157527 #8	ENSGT00940000157131.b #9	ENSGT00560000077278.b	ENSGT00940000153704.A #11	ENSGT00390000018696 #12	ENSGT00940000166753	ENSGT00940000158728 #13	ENSGT00940000157045 #15	ENSGT00940000161037	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00960000189415	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184.r ##24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000155985 #27	ENSGT00940000160242 #29	ENSGT00940000154107.a #30	ENSGT00940000154995 #31	ENSGT00390000017863 #32	ENSGT00940000154337 #33	ENSGT00530000063528.A.b #34	ENSGT00940000156869 #36	ENSGT00390000008096.D ##37	ENSGT00940000157121	ENSGT00940000155660.b
Cryptodira	ANCESTRAL SPECIES	4	ENSGT00940000155488	ENSGT00940000158391 #7	ENSGT00940000157527 #8	ENSGT00940000157131.b #9	ENSGT00560000077278.b	ENSGT00940000153704.A #11	ENSGT00390000018696 #12	ENSGT00940000158728 #13	ENSGT00940000157045 #15	ENSGT00940000161037	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184.q.b #24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000155985 #27	ENSGT00940000160242 #29	ENSGT00940000154107.a #30	ENSGT00940000154995 #31	ENSGT00390000017863 #32	ENSGT00940000154337 #33	ENSGT00940000168259	ENSGT00940000156869 #36	ENSGT00390000008096.D ##37	ENSGT00940000157121	ENSGT00940000155660.b
Testudinoidea	ANCESTRAL SPECIES	8	ENSGT00940000155488	ENSGT00940000158391 #7	ENSGT00940000157527 #8	ENSGT00940000157131.b #9	ENSGT00560000077278.b	ENSGT00940000153704.A #11	ENSGT00390000018696 #12	ENSGT00940000158728 #13	ENSGT00940000157045 #15	ENSGT00940000161037	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184.q.b #24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000155985 #27	ENSGT00940000160242 #29	ENSGT00940000154107.a #30	ENSGT00940000154995 #31	ENSGT00390000017863 #32	ENSGT00940000154337 #33	ENSGT00940000168259	ENSGT00940000156869 #36	ENSGT00390000008096.D ##37	ENSGT00940000157121	ENSGT00940000155660.b
Emydidae	ANCESTRAL SPECIES	40	ENSGT00940000155488	ENSGT00940000158391 #7	ENSGT00940000157527 #8	ENSGT00940000157131.b #9	ENSGT00560000077278.b	ENSGT00940000153704.A #11	ENSGT00390000018696 #12	ENSGT00940000158728 #13	ENSGT00940000157045 #15	ENSGT00940000161037	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184.q.b #24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000155985 #27	ENSGT00940000160242 #29	ENSGT00940000154107.a #30	ENSGT00940000154995 #31	ENSGT00390000017863 #32	ENSGT00940000154337 #33	ENSGT00940000156869 #36	ENSGT00390000008096.D ##37	ENSGT00940000157121	ENSGT00940000155660.b	ENSGT00530000063480.b
Three-toed box turtle	MODERN SPECIES	30	GADL1 (ENSTMTG00000000115) #7	TGFBR2 (ENSTMTG00000000240) #8	RBMS3 (ENSTMTG00000000274) #9	ZCWPW2 (ENSTMTG00000000290)	AZI2 (ENSTMTG00000000305) #11	ENSTMTG00000000328	ENSTMTG00000000345	EOMES (ENSTMTG00000000365) #13	SLC4A7 (ENSTMTG00000000889) #15	NEK10 (ENSTMTG00000002545)	LRRC3B (ENSTMTG00000002554) #17	OXSM (ENSTMTG00000002556) #18	NGLY1 (ENSTMTG00000002560) #19	TOP2B (ENSTMTG00000002569) #20	RARB (ENSTMTG00000002587) #21	THRB (ENSTMTG00000002600) #22	NR1D2 (ENSTMTG00000002604) #23	RPL15 (ENSTMTG00000002610) #24	NKIRAS1 (ENSTMTG00000002614) #25	UBE2E1 (ENSTMTG00000002622) #26	ENSTMTG00000002627 #27	ENSTMTG00000002632 #27	ZNF385D (ENSTMTG00000002639) #29	ENSTMTG00000002647 #30	ENSTMTG00000002650 #30	KAT2B (ENSTMTG00000002662) #31	PP2D1 (ENSTMTG00000002725) #32	RAB5A (ENSTMTG00000002731) #33	ENSTMTG00000002737	KCNH8 (ENSTMTG00000002744) #36	ENSTMTG00000002760 ##37
painted turtle	MODERN SPECIES	7	GPD1L (ENSCPBG00000022712)	GADL1 (ENSCPBG00000022702) #7	TGFBR2 (ENSCPBG00000022696) #8	RBMS3 (ENSCPBG00000022678) #9	ENSCPBG00000022667	AZI2 (ENSCPBG00000022663) #11	CMC1 (ENSCPBG00000022661) #12	EOMES (ENSCPBG00000022654) #13	SLC4A7 (ENSCPBG00000022630) #15	NEK10 (ENSCPBG00000022609)	OXSM (ENSCPBG00000022604) #18	NGLY1 (ENSCPBG00000022598) #19	TOP2B (ENSCPBG00000022597) #20	RARB (ENSCPBG00000022594) #21	ENSCPBG00000022593	THRB (ENSCPBG00000022590) #22	NR1D2 (ENSCPBG00000022587) #23	RPL15 (ENSCPBG00000022585) #24	NKIRAS1 (ENSCPBG00000022583) #25	UBE2E1 (ENSCPBG00000022581) #26	UBE2E2 (ENSCPBG00000022578) #27	ENSCPBG00000022577 #27	ZNF385D (ENSCPBG00000022573) #29	SGO1 (ENSCPBG00000022568) #30	ENSCPBG00000022566	KAT2B (ENSCPBG00000022564) #31	PP2D1 (ENSCPBG00000022561) #32	RAB5A (ENSCPBG00000022559) #33	ENSCPBG00000022555	KCNH8 (ENSCPBG00000022553) #36	ENSCPBG00000022551 ##37
Testudinidae	ANCESTRAL SPECIES	1	ENSGT00940000158391 #7	ENSGT00940000157527 #8	ENSGT00940000157131.b #9	ENSGT00560000077278.b	ENSGT00940000153704.A #11	ENSGT00390000018696 #12	ENSGT00940000166753	ENSGT00940000158728 #13	ENSGT00940000157045 #15	ENSGT00940000161037	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184.q.b #24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000155985 #27	ENSGT00940000160242 #29	ENSGT00940000154107.a #30	ENSGT00940000154995 #31	ENSGT00390000017863 #32	ENSGT00940000154337 #33	ENSGT00940000168259	ENSGT00940000156869 #36	ENSGT00390000008096.D ##37	ENSGT00940000157121	ENSGT00940000155660.b
Goode s thornscrub tortoise	MODERN SPECIES	11	GADL1 (ENSGEVG00005020301) #7	TGFBR2 (ENSGEVG00005020291) #8	RBMS3 (ENSGEVG00005020284) #9	ZCWPW2 (ENSGEVG00005020275)	CMC1 (ENSGEVG00005020271) #12	AZI2 (ENSGEVG00005020265) #11	ENSGEVG00005020262	EOMES (ENSGEVG00005020252) #13	SLC4A7 (ENSGEVG00005013833) #15	NEK10 (ENSGEVG00005012109)	LRRC3B (ENSGEVG00005012084) #17	OXSM (ENSGEVG00005012063) #18	NGLY1 (ENSGEVG00005011991) #19	TOP2B (ENSGEVG00005009518) #20	RARB (ENSGEVG00005008990) #21	THRB (ENSGEVG00005008880) #22	NR1D2 (ENSGEVG00005008849) #23	RPL15 (ENSGEVG00005008770) ##24	NKIRAS1 (ENSGEVG00005008727) #25	UBE2E1 (ENSGEVG00005008700) #26	UBE2E2 (ENSGEVG00005008626) #27	ENSGEVG00005008603 #27	ZNF385D (ENSGEVG00005008544) #29	SGO1 (ENSGEVG00005008508) #30	KAT2B (ENSGEVG00005008098) #31	PP2D1 (ENSGEVG00005007987) #32	RAB5A (ENSGEVG00005007969) #33	ENSGEVG00005007928	KCNH8 (ENSGEVG00005007860) #36	ENSGEVG00005007813 ##37	ENSGEVG00005007789
Abingdon island giant tortoise	MODERN SPECIES	785																THRB (ENSCABG00000006641) #22	NR1D2 (ENSCABG00000006643) #23	RPL15 (ENSCABG00000006664) #24	NKIRAS1 (ENSCABG00000006665) #25	UBE2E1 (ENSCABG00000006667) #26	UBE2E2 (ENSCABG00000006670) #27	ENSCABG00000006671 #27	ZNF385D (ENSCABG00000006672) #29	OR4Q2 (ENSCABG00000006681)
Chinese turtle	MODERN SPECIES	1960	GADL1 (ENSPSIG00000005134) #7	TGFBR2 (ENSPSIG00000005251) #8	RBMS3 (ENSPSIG00000005269) #9	AZI2 (ENSPSIG00000005336) #11	ENSPSIG00000005347	ENSPSIG00000000831	EOMES (ENSPSIG00000005360) #13	SLC4A7 (ENSPSIG00000005436) #15	NEK10 (ENSPSIG00000006298)	LRRC3B (ENSPSIG00000000837) #17	ENSPSIG00000000847	OXSM (ENSPSIG00000006624) #18	NGLY1 (ENSPSIG00000006640) #19	TOP2B (ENSPSIG00000007219) #20	RARB (ENSPSIG00000007930) #21	THRB (ENSPSIG00000008182) #22	ENSPSIG00000000863	NR1D2 (ENSPSIG00000008488) #23	RPL15 (ENSPSIG00000008657) #24	NKIRAS1 (ENSPSIG00000008675) #25	UBE2E1 (ENSPSIG00000008698) #26	ENSPSIG00000000887	UBE2E2 (ENSPSIG00000008889) #27	ENSPSIG00000008897	ENSPSIG00000000899	ZNF385D (ENSPSIG00000008912) #29
Archosauria	ANCESTRAL SPECIES		ENSGT00940000158391 #7	ENSGT00940000157527 #8	ENSGT00940000157131.b #9	ENSGT00560000077278.b	ENSGT00940000153704.A #11	ENSGT00940000166753	ENSGT00940000158728 #13	ENSGT00940000157045 #15	ENSGT00940000161037	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00960000189415	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184.r ##24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000155985 #27	ENSGT00940000160242 #29	ENSGT00940000154107.a #30	ENSGT00940000154995 #31	ENSGT00390000017863 #32	ENSGT00940000154337 #33	ENSGT00530000063528.A.b #34	ENSGT00940000156869 #36	ENSGT00390000008096.D ##37	ENSGT00940000157121	ENSGT00940000155660.b
Aves	ANCESTRAL SPECIES	5	ENSGT00940000155488	ENSGT00940000158391 #7	ENSGT00940000157527 #8	ENSGT00940000157131.b #9	ENSGT00940000153704.A #11	ENSGT00940000166753	ENSGT00940000158728 #13	ENSGT00940000157045 #15	ENSGT00940000161037	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00960000189415	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184.r ##24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000155985 #27	ENSGT00940000160242 #29	ENSGT00940000154107.a #30	ENSGT00940000154995 #31	ENSGT00390000017863 #32	ENSGT00940000154337 #33	ENSGT00530000063528.A.b #34	ENSGT00940000156869 #36	ENSGT00390000008096.D ##37	ENSGT00940000157121	ENSGT00940000155660.b
Neognathae	ANCESTRAL SPECIES		ENSGT00940000155488	ENSGT00940000158391 #7	ENSGT00940000157527 #8	ENSGT00940000157131.b #9	ENSGT00940000153704.A #11	ENSGT00940000166753	ENSGT00940000158728 #13	ENSGT00940000157045 #15	ENSGT00940000161037	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00960000189415	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184.r ##24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000155985 #27	ENSGT00940000160242 #29	ENSGT00940000154107.a #30	ENSGT00940000154995 #31	ENSGT00390000017863 #32	ENSGT00940000154337 #33	ENSGT00530000063528.A.b #34	ENSGT00940000156869 #36	ENSGT00390000008096.D ##37	ENSGT00940000157121	ENSGT00940000155660.b
Galloanserae	ANCESTRAL SPECIES		ENSGT00940000157880	ENSGT00940000155488	ENSGT00940000158391 #7	ENSGT00940000157527 #8	ENSGT00940000157131.b #9	ENSGT00940000153704.A #11	ENSGT00940000166753	ENSGT00940000158728 #13	ENSGT00940000157045 #15	ENSGT00940000161037	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184.r ##24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000155985 #27	ENSGT00940000160242 #29	ENSGT00940000154107.a #30	ENSGT00940000154995 #31	ENSGT00390000017863 #32	ENSGT00940000154337 #33	ENSGT00530000063528.A.b #34	ENSGT00940000156869 #36	ENSGT00390000008096.D ##37	ENSGT00940000157121	ENSGT00940000155660.b
Phasianidae	ANCESTRAL SPECIES	1	ENSGT00940000157880	ENSGT00940000155488	ENSGT00940000158391 #7	ENSGT00940000157527 #8	ENSGT00940000157131.b #9	ENSGT00940000153704.A #11	ENSGT00940000166753	ENSGT00940000158728 #13	ENSGT00940000157045 #15	ENSGT00940000161037	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184.r ##24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000155985 #27	ENSGT00940000154107.a #30	ENSGT00940000154995 #31	ENSGT00390000017863 #32	ENSGT00940000154337 #33	ENSGT00530000063528.A.b #34	ENSGT00940000156869 #36	ENSGT00390000008096.D ##37	ENSGT00940000157121	ENSGT00940000155660.b	ENSGT00530000063480.b
Japanese quail	MODERN SPECIES	11	OSBPL10 (ENSCJPG00005012826)	STT3B (ENSCJPG00005012825)	GADL1 (ENSCJPG00005012823) #7	TGFBR2 (ENSCJPG00005012822) #8	RBMS3 (ENSCJPG00005012819) #9	AZI2 (ENSCJPG00005012818) #11	ENSCJPG00005012817	EOMES (ENSCJPG00005012816) #13	SLC4A7 (ENSCJPG00005012814) #15	NEK10 (ENSCJPG00005012813)	LRRC3B (ENSCJPG00005012810) #17	OXSM (ENSCJPG00005012807) #18	NGLY1 (ENSCJPG00005012806) #19	ENSCJPG00005012613 #20	RARB (ENSCJPG00005012610) #21	THRB (ENSCJPG00005012604) #22	NR1D2 (ENSCJPG00005012603) #23	RPL15 (ENSCJPG00005012602) ##24	NKIRAS1 (ENSCJPG00005012601) #25	UBE2E1 (ENSCJPG00005012600) #26	ENSCJPG00005012598	UBE2E2 (ENSCJPG00005012597) #27	ENSCJPG00005012595	ENSCJPG00005012593	SGO1 (ENSCJPG00005012590) #30	KAT2B (ENSCJPG00005012589) #31	PP2D1 (ENSCJPG00005012588) #32	RAB5A (ENSCJPG00005012587) #33	EFHB (ENSCJPG00005012586) #34	KCNH8 (ENSCJPG00005012584) #36	ENSCJPG00005012578 ##37
Phasianidae_b	ANCESTRAL SPECIES	1	ENSGT00940000157880	ENSGT00940000155488	ENSGT00940000158391 #7	ENSGT00940000157527 #8	ENSGT00940000157131.b #9	ENSGT00940000153704.A #11	ENSGT00940000166753	ENSGT00940000158728 #13	ENSGT00940000157045 #15	ENSGT00940000161037	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184.r ##24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000155985 #27	ENSGT00940000154107.a #30	ENSGT00940000154995 #31	ENSGT00390000017863 #32	ENSGT00940000154337 #33	ENSGT00530000063528.A.b #34	ENSGT00940000156869 #36	ENSGT00390000008096.D ##37	ENSGT00940000157121	ENSGT00940000155660.b	ENSGT00530000063480.b
Turkey	MODERN SPECIES	26	OSBPL10 (ENSMGAG00000011184)	STT3B (ENSMGAG00000011169)	GADL1 (ENSMGAG00000011156) #7	TGFBR2 (ENSMGAG00000011137) #8	RBMS3 (ENSMGAG00000011129) #9	AZI2 (ENSMGAG00000011128) #11	ENSMGAG00000011127	EOMES (ENSMGAG00000011118) #13	SLC4A7 (ENSMGAG00000011120) #15	ENSMGAG00000011114	LRRC3B (ENSMGAG00000011112) #17	OXSM (ENSMGAG00000011111) #18	NGLY1 (ENSMGAG00000011100) #19	TOP2B (ENSMGAG00000011069) #20	RARB (ENSMGAG00000011041) #21	THRB (ENSMGAG00000011036) #22	NR1D2 (ENSMGAG00000011018) #23	RPL15 (ENSMGAG00000011013) ##24	NKIRAS1 (ENSMGAG00000011005) #25	UBE2E2 (ENSMGAG00000010994) #27	ENSMGAG00000021315	ENSMGAG00000022722	ENSMGAG00000017923	ENSMGAG00000017085	ENSMGAG00000016085	ENSMGAG00000020364	ENSMGAG00000010703	ENSMGAG00000010706	ENSMGAG00000019096	ENSMGAG00000010713	ENSMGAG00000020612
Chicken	MODERN SPECIES	11	OSBPL10 (ENSGALG00010002334)	STT3B (ENSGALG00010002329)	GADL1 (ENSGALG00010002309) #7	TGFBR2 (ENSGALG00010002281) #8	RBMS3 (ENSGALG00010001504) #9	AZI2 (ENSGALG00010002622) #11	CMC1 (ENSGALG00010002613)	EOMES (ENSGALG00010002605) #13	SLC4A7 (ENSGALG00010002589) #15	NEK10 (ENSGALG00010002559)	LRRC3B (ENSGALG00010002527) #17	OXSM (ENSGALG00010002470) #18	NGLY1 (ENSGALG00010002464) #19	TOP2B (ENSGALG00010002453) #20	RARB (ENSGALG00010002438) #21	THRB (ENSGALG00010001557) #22	NR1D2 (ENSGALG00010001528) #23	RPL15 (ENSGALG00010001698) ##24	NKIRAS1 (ENSGALG00010001693) #25	UBE2E1 (ENSGALG00010001668) #26	UBE2E2 (ENSGALG00010001649) #27	ZNF385D (ENSGALG00010001639)	SGO1 (ENSGALG00010001783) #30	KAT2B (ENSGALG00010001778) #31	PP2D1 (ENSGALG00010001770) #32	RAB5A (ENSGALG00010001760) #33	EFHB (ENSGALG00010001750) #34	KCNH8 (ENSGALG00010001747) #36	SATB1 (ENSGALG00010001741) ##37	TBC1D5 (ENSGALG00010001521)	PLCL2 (ENSGALG00010001512)
Anatidae	ANCESTRAL SPECIES	1	ENSGT00940000157880	ENSGT00940000155488	ENSGT00940000158391 #7	ENSGT00940000157527 #8	ENSGT00940000157131.b #9	ENSGT00940000153704.A #11	ENSGT00940000166753	ENSGT00940000158728 #13	ENSGT00940000157045 #15	ENSGT00940000161037	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184.r ##24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000155985 #27	ENSGT00940000160242 #29	ENSGT00940000154107.a #30	ENSGT00940000154995 #31	ENSGT00390000017863 #32	ENSGT00940000154337 #33	ENSGT00940000168259	ENSGT00940000156869 #36	ENSGT00390000008096.D ##37	ENSGT00940000157121	ENSGT00940000155660.b
Pink-footed goose	MODERN SPECIES		OSBPL10 (ENSABRG00000003930)	STT3B (ENSABRG00000003955)	GADL1 (ENSABRG00000004000) #7	TGFBR2 (ENSABRG00000004089) #8	RBMS3 (ENSABRG00000004171) #9	AZI2 (ENSABRG00000004278) #11	ENSABRG00000004336	EOMES (ENSABRG00000004388) #13	SLC4A7 (ENSABRG00000004404) #15	NEK10 (ENSABRG00000004468)	LRRC3B (ENSABRG00000004599) #17	OXSM (ENSABRG00000004660) #18	NGLY1 (ENSABRG00000004670) #19	TOP2B (ENSABRG00000004852) #20	RARB (ENSABRG00000006454) #21	THRB (ENSABRG00000006547) #22	NR1D2 (ENSABRG00000006583) #23	RPL15 (ENSABRG00000006590) ##24	NKIRAS1 (ENSABRG00000006597) #25	UBE2E1 (ENSABRG00000006620) #26	UBE2E2 (ENSABRG00000006641) #27	ZNF385D (ENSABRG00000006672) #29	SGO1 (ENSABRG00000006726) #30	KAT2B (ENSABRG00000006750) #31	PP2D1 (ENSABRG00000006767) #32	RAB5A (ENSABRG00000006776) #33	ENSABRG00000006786	KCNH8 (ENSABRG00000006793) #36	ENSABRG00000006820 ##37	TBC1D5 (ENSABRG00000006845)	PLCL2 (ENSABRG00000006870)
Duck	MODERN SPECIES	10	ENSAPLG00000022988	STT3B (ENSAPLG00000010692)	GADL1 (ENSAPLG00000011272) #7	TGFBR2 (ENSAPLG00000012100) #8	RBMS3 (ENSAPLG00000012270) #9	AZI2 (ENSAPLG00000023912) #11	ENSAPLG00000012645	EOMES (ENSAPLG00000022951) #13	ENSAPLG00000026328	SLC4A7 (ENSAPLG00000004253) #15	LRRC3B (ENSAPLG00000002239) #17	OXSM (ENSAPLG00000008060) #18	NGLY1 (ENSAPLG00000007816) #19	TOP2B (ENSAPLG00000006835) #20	RARB (ENSAPLG00000006432) #21	THRB (ENSAPLG00000006081) #22	NR1D2 (ENSAPLG00000005753) #23	RPL15 (ENSAPLG00000005626) ##24	NKIRAS1 (ENSAPLG00000005623) #25	ENSAPLG00000005577	UBE2E2 (ENSAPLG00000005567) #27	ZNF385D (ENSAPLG00000011365) #29	SGO1 (ENSAPLG00000012083) #30	KAT2B (ENSAPLG00000012109) #31	PP2D1 (ENSAPLG00000012677) #32	RAB5A (ENSAPLG00000020042) #33	ENSAPLG00000026271	KCNH8 (ENSAPLG00000013144) #36	ENSAPLG00000009362 ##37	TBC1D5 (ENSAPLG00000015790)	PLCL2 (ENSAPLG00000015653)
Neognathae_b	ANCESTRAL SPECIES	9	ENSGT00940000155488	ENSGT00940000158391 #7	ENSGT00940000157527 #8	ENSGT00940000157131.b #9	ENSGT00940000153704.A #11	ENSGT00940000166753	ENSGT00940000158728 #13	ENSGT00940000157045 #15	ENSGT00940000161037	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00960000189415	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184.r ##24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000155985 #27	ENSGT00940000160242 #29	ENSGT00940000154107.a #30	ENSGT00940000154995 #31	ENSGT00390000017863 #32	ENSGT00940000154337 #33	ENSGT00530000063528.A.b #34	ENSGT00940000156869 #36	ENSGT00390000008096.D ##37	ENSGT00940000157121	ENSGT00940000155660.b
Neognathae_c	ANCESTRAL SPECIES	12	ENSGT00940000155488	ENSGT00940000158391 #7	ENSGT00940000157527 #8	ENSGT00940000157131.b #9	ENSGT00940000153704.A #11	ENSGT00940000166753	ENSGT00940000158728 #13	ENSGT00940000157045 #15	ENSGT00940000161037	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00960000189415	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184.r ##24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000155985 #27	ENSGT00940000160242 #29	ENSGT01080000259642	ENSGT00940000154107.a #30	ENSGT00940000154995 #31	ENSGT00390000017863 #32	ENSGT00940000154337 #33	ENSGT00940000156869 #36	ENSGT00390000008096.D ##37	ENSGT00940000157121	ENSGT00940000155660.b
Kakapo	MODERN SPECIES		OSBPL10 (ENSSHBG00005003241)	STT3B (ENSSHBG00005003223)	GADL1 (ENSSHBG00005003194) #7	TGFBR2 (ENSSHBG00005003175) #8	RBMS3 (ENSSHBG00005003117) #9	AZI2 (ENSSHBG00005003072) #11	ENSSHBG00005003058	EOMES (ENSSHBG00005003043) #13	SLC4A7 (ENSSHBG00005003010) #15	ENSSHBG00005002977	LRRC3B (ENSSHBG00005002946) #17	OXSM (ENSSHBG00005002920) #18	NGLY1 (ENSSHBG00005002895) #19	TOP2B (ENSSHBG00005002861) #20	RARB (ENSSHBG00005002841) #21	THRB (ENSSHBG00005002803) #22	NR1D2 (ENSSHBG00005002772) #23	RPL15 (ENSSHBG00005002753) ##24	NKIRAS1 (ENSSHBG00005002739) #25	UBE2E1 (ENSSHBG00005002683) #26	ZNF385D (ENSSHBG00005002626) #29	ENSSHBG00005002607 #30	KAT2B (ENSSHBG00005002267) #31	RAB5A (ENSSHBG00005002167) #33	ENSSHBG00005002156	KCNH8 (ENSSHBG00005002135) #36	ENSSHBG00005002053 ##37	TBC1D5 (ENSSHBG00005002014)	PLCL2 (ENSSHBG00005001968)	ENSSHBG00005001940	RFTN1 (ENSSHBG00005001920)
Golden eagle	MODERN SPECIES	19	GADL1 (ENSACCG00020006854) #7	TGFBR2 (ENSACCG00020006873) #8	RBMS3 (ENSACCG00020006886) #9	AZI2 (ENSACCG00020006900) #11	ENSACCG00020006916	ENSACCG00020006929 #13	ENSACCG00020006943 #13	SLC4A7 (ENSACCG00020009605) #15	NEK10 (ENSACCG00020011710)	LRRC3B (ENSACCG00020011805) #17	OXSM (ENSACCG00020011831) #18	ENSACCG00020011870	NGLY1 (ENSACCG00020011896) #19	TOP2B (ENSACCG00020011993) #20	RARB (ENSACCG00020012090) #21	THRB (ENSACCG00020012126) #22	NR1D2 (ENSACCG00020012176) #23	RPL15 (ENSACCG00020012212) ##24	NKIRAS1 (ENSACCG00020012236) #25	UBE2E2 (ENSACCG00020012314) #27	ZNF385D (ENSACCG00020012382) #29	ENSACCG00020012400	KAT2B (ENSACCG00020012524) #31	PP2D1 (ENSACCG00020012744) #32	RAB5A (ENSACCG00020012757) #33	ENSACCG00020012772	KCNH8 (ENSACCG00020012790) #36	ENSACCG00020012827 ##37	TBC1D5 (ENSACCG00020012882)	PLCL2 (ENSACCG00020012951)	ENSACCG00020012975
Passeriformes	ANCESTRAL SPECIES		ENSGT00940000157880	ENSGT00940000155488	ENSGT00940000158391 #7	ENSGT00940000157527 #8	ENSGT00940000157131.b #9	ENSGT00940000153704.A #11	ENSGT00940000166753	ENSGT00940000158728 #13	ENSGT01000000217679	ENSGT00940000157045 #15	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184.r ##24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000155985 #27	ENSGT00940000160242 #29	ENSGT00940000154107.a #30	ENSGT00940000154995 #31	ENSGT00940000154337 #33	ENSGT00530000063528.A.b #34	ENSGT00940000156869 #36	ENSGT00390000008096.D ##37	ENSGT00940000157121	ENSGT00940000155660.b	ENSGT00530000063480.b
Passeriformes_d	ANCESTRAL SPECIES		ENSGT00940000157880	ENSGT00940000155488	ENSGT00940000158391 #7	ENSGT00940000157527 #8	ENSGT00940000157131.b #9	ENSGT00940000153704.A #11	ENSGT00940000166753	ENSGT00940000158728 #13	ENSGT01000000217679	ENSGT00940000157045 #15	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184.r ##24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000155985 #27	ENSGT00940000160242 #29	ENSGT00940000154107.a #30	ENSGT00940000154995 #31	ENSGT00940000154337 #33	ENSGT00530000063528.A.b #34	ENSGT00940000156869 #36	ENSGT00390000008096.D ##37	ENSGT00940000157121.b	ENSGT00940000155660.b	ENSGT00530000063480.b
Flycatcher	MODERN SPECIES	11	OSBPL10 (ENSFALG00000009144)	STT3B (ENSFALG00000009146)	GADL1 (ENSFALG00000009152) #7	TGFBR2 (ENSFALG00000009162) #8	RBMS3 (ENSFALG00000009165) #9	AZI2 (ENSFALG00000025307) #11	ENSFALG00000009179	EOMES (ENSFALG00000009181) #13	ENSFALG00000023981	SLC4A7 (ENSFALG00000009182) #15	ENSFALG00000025769 #16	OXSM (ENSFALG00000009185) #18	NGLY1 (ENSFALG00000009187) #19	TOP2B (ENSFALG00000009192) #20	RARB (ENSFALG00000009195) #21	THRB (ENSFALG00000009204) #22	NR1D2 (ENSFALG00000009205) #23	RPL15 (ENSFALG00000028769) ##24	NKIRAS1 (ENSFALG00000028782) #25	UBE2E1 (ENSFALG00000009215) #26	ZNF385D (ENSFALG00000009217) #29	SGO1 (ENSFALG00000009218) #30	KAT2B (ENSFALG00000009224) #31	RAB5A (ENSFALG00000009239) #33	ENSFALG00000009245	KCNH8 (ENSFALG00000009249) #36	ENSFALG00000009258 ##37	ENSFALG00000009266	DPH3 (ENSFALG00000009270)	GALNT15 (ENSFALG00000009272)	ANKRD28 (ENSFALG00000009274)
Passeriformes_g	ANCESTRAL SPECIES	6	ENSGT00940000157880	ENSGT00940000155488	ENSGT00940000158391 #7	ENSGT00940000157527 #8	ENSGT00940000157131.b #9	ENSGT00940000153704.A #11	ENSGT00940000166753	ENSGT00940000158728 #13	ENSGT01000000217679	ENSGT00940000157045 #15	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184.r ##24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000155985 #27	ENSGT00940000160242 #29	ENSGT00940000154107.a #30	ENSGT00940000154995 #31	ENSGT00940000154337 #33	ENSGT00530000063528.A.b #34	ENSGT00940000156869 #36	ENSGT00390000008096.D ##37	ENSGT00940000157121.b	ENSGT00940000155660.b	ENSGT00530000063480.b
Passeroidea	ANCESTRAL SPECIES	6	ENSGT00940000157880	ENSGT00940000155488	ENSGT00940000158391 #7	ENSGT00940000157527 #8	ENSGT00940000157131.b #9	ENSGT00940000153704.A #11	ENSGT00940000166753	ENSGT00940000158728 #13	ENSGT01000000217679	ENSGT00940000157045 #15	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184.r ##24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000155985 #27	ENSGT00940000160242 #29	ENSGT00940000154107.a #30	ENSGT00940000154995 #31	ENSGT00940000154337 #33	ENSGT00530000063528.A.b #34	ENSGT00940000156869 #36	ENSGT00390000008096.D ##37	ENSGT00940000157121.b	ENSGT00940000155660.b	ENSGT00530000063480.b
Common canary	MODERN SPECIES	5	OSBPL10 (ENSSCAG00000000314)	STT3B (ENSSCAG00000000161)	GADL1 (ENSSCAG00000000103) #7	TGFBR2 (ENSSCAG00000000095) #8	RBMS3 (ENSSCAG00000000085) #9	AZI2 (ENSSCAG00000000075) #11	ENSSCAG00000000071	EOMES (ENSSCAG00000000051) #13	ENSSCAG00000000043	SLC4A7 (ENSSCAG00000000029) #15	LRRC3B (ENSSCAG00000000020) #17	OXSM (ENSSCAG00000015334) #18	NGLY1 (ENSSCAG00000015333) #19	TOP2B (ENSSCAG00000015321) #20	RARB (ENSSCAG00000015312) #21	THRB (ENSSCAG00000015306) #22	NR1D2 (ENSSCAG00000015303) #23	RPL15 (ENSSCAG00000015297) ##24	NKIRAS1 (ENSSCAG00000015293) #25	UBE2E1 (ENSSCAG00000015288) #26	UBE2E2 (ENSSCAG00000015285) #27	ZNF385D (ENSSCAG00000015281) #29	SGO1 (ENSSCAG00000015278) #30	KAT2B (ENSSCAG00000015226) #31	RAB5A (ENSSCAG00000015213) #33	ENSSCAG00000015212	KCNH8 (ENSSCAG00000015206) #36	ENSSCAG00000015196 ##37	TBC1D5 (ENSSCAG00000015186)	PLCL2 (ENSSCAG00000015180)	ENSSCAG00000015174
Zebra finch	MODERN SPECIES	12	STT3B (ENSTGUG00000003632)	GADL1 (ENSTGUG00000003593) #7	TGFBR2 (ENSTGUG00000003590) #8	RBMS3 (ENSTGUG00000003572) #9	AZI2 (ENSTGUG00000029248) #11	ENSTGUG00000025662	ENSTGUG00000022745 #13	ENSTGUG00000003557 #13	SLC4A7 (ENSTGUG00000003545) #15	ENSTGUG00000020137	LRRC3B (ENSTGUG00000003544) #17	OXSM (ENSTGUG00000003542) #18	NGLY1 (ENSTGUG00000003519) #19	TOP2B (ENSTGUG00000003405) #20	RARB (ENSTGUG00000003374) #21	THRB (ENSTGUG00000018874) #22	NR1D2 (ENSTGUG00000003335) #23	RPL15 (ENSTGUG00000025989) ##24	NKIRAS1 (ENSTGUG00000026551) #25	UBE2E1 (ENSTGUG00000003303) #26	ENSTGUG00000003279	SGO1 (ENSTGUG00000003277) #30	KAT2B (ENSTGUG00000003246) #31	RAB5A (ENSTGUG00000003236) #33	EFHB (ENSTGUG00000003223) #34	KCNH8 (ENSTGUG00000003211) #36	ENSTGUG00000003198 ##37	TBC1D5 (ENSTGUG00000003159)	PLCL2 (ENSTGUG00000003154)	ENSTGUG00000003145	RFTN1 (ENSTGUG00000003139)
Medium ground finch	MODERN SPECIES	54	STT3B (ENSGFOG00000002140)	GADL1 (ENSGFOG00000002032) #7	TGFBR2 (ENSGFOG00000001993) #8	ENSGFOG00000001986	RBMS3 (ENSGFOG00000001954) #9	AZI2 (ENSGFOG00000001933) #11	ENSGFOG00000001920	EOMES (ENSGFOG00000001915) #13	ENSGFOG00000001908	SLC4A7 (ENSGFOG00000001870) #15	LRRC3B (ENSGFOG00000001864) #17	OXSM (ENSGFOG00000001857) #18	NGLY1 (ENSGFOG00000001844) #19	TOP2B (ENSGFOG00000001805) #20	RARB (ENSGFOG00000001772) #21	THRB (ENSGFOG00000001750) #22	NR1D2 (ENSGFOG00000001736) #23	RPL15 (ENSGFOG00000001730) ##24	NKIRAS1 (ENSGFOG00000001722) #25	UBE2E1 (ENSGFOG00000001690) #26	ENSGFOG00000001655
Great tit	MODERN SPECIES	11	ENSPMJG00000007408	GADL1 (ENSPMJG00000007403) #7	TGFBR2 (ENSPMJG00000007396) #8	RBMS3 (ENSPMJG00000007363) #9	AZI2 (ENSPMJG00000007199) #11	ENSPMJG00000007195	EOMES (ENSPMJG00000007123) #13	ENSPMJG00000007122	SLC4A7 (ENSPMJG00000007093) #15	LRRC3B (ENSPMJG00000007048) #17	ENSPMJG00000007032	NGLY1 (ENSPMJG00000006999) #19	TOP2B (ENSPMJG00000003798) #20	ENSPMJG00000003786	RARB (ENSPMJG00000003774) #21	THRB (ENSPMJG00000003753) #22	NR1D2 (ENSPMJG00000003748) #23	RPL15 (ENSPMJG00000003746) ##24	NKIRAS1 (ENSPMJG00000003736) #25	UBE2E1 (ENSPMJG00000003728) #26	UBE2E2 (ENSPMJG00000003711) #27	ENSPMJG00000003694	ENSPMJG00000003683	SGO1 (ENSPMJG00000003626) #30	KAT2B (ENSPMJG00000003620) #31	RAB5A (ENSPMJG00000003611) #33	ENSPMJG00000003560	KCNH8 (ENSPMJG00000003557) #36	ENSPMJG00000003421 ##37	TBC1D5 (ENSPMJG00000003296)	PLCL2 (ENSPMJG00000002992)
African ostrich	MODERN SPECIES	1064	GADL1 (ENSSCUG00000014546) #7	TGFBR2 (ENSSCUG00000014554) #8	RBMS3 (ENSSCUG00000014566) #9	AZI2 (ENSSCUG00000014575) #11	ENSSCUG00000014577	EOMES (ENSSCUG00000014588) #13	SLC4A7 (ENSSCUG00000014594) #15	NEK10 (ENSSCUG00000014603)	ENSSCUG00000014607	LRRC3B (ENSSCUG00000014611) #17	OXSM (ENSSCUG00000014613) #18	NGLY1 (ENSSCUG00000014617) #19	TOP2B (ENSSCUG00000014624) #20	RARB (ENSSCUG00000014628) #21	ENSSCUG00000014632	THRB (ENSSCUG00000014633) #22
Australian saltwater crocodile	MODERN SPECIES		RBMS3 (ENSCPRG00005004405) #9	ENSCPRG00005004333	AZI2 (ENSCPRG00005004330) #11	ENSCPRG00005004328	EOMES (ENSCPRG00005004282) #13	SLC4A7 (ENSCPRG00005004229) #15	ENSCPRG00005004208	NEK10 (ENSCPRG00005004170)	ENSCPRG00005004108	ENSCPRG00005004107	ENSCPRG00005004106	NGLY1 (ENSCPRG00005004102) #19	TOP2B (ENSCPRG00005002485) #20	RARB (ENSCPRG00005002310) #21	ENSCPRG00005002242	THRB (ENSCPRG00005002203) #22	NR1D2 (ENSCPRG00005002147) #23	RPL15 (ENSCPRG00005002146) #24	NKIRAS1 (ENSCPRG00005002143) #25	UBE2E1 (ENSCPRG00005002140) #26	UBE2E2 (ENSCPRG00005002088) #27	ENSCPRG00005002031 #27	ZNF385D (ENSCPRG00005001995) #29	SGO1 (ENSCPRG00005001911) #30	KAT2B (ENSCPRG00005001888) #31	PP2D1 (ENSCPRG00005001820) #32	RAB5A (ENSCPRG00005001816) #33	EFHB (ENSCPRG00005001810) #34	KCNH8 (ENSCPRG00005001753) #36	ENSCPRG00005001584 ##37	TBC1D5 (ENSCPRG00005001492)
Lepidosauria	ANCESTRAL SPECIES	5	ENSGT00940000158391 #7	ENSGT00940000157527 #8	ENSGT00940000157131.b #9	ENSGT00560000077278.b	ENSGT00940000153704.A #11	ENSGT00940000166753	ENSGT00940000158728 #13	ENSGT00940000157045 #15	ENSGT00940000161037	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00960000189415	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184.q.a ##24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000155985 #27	ENSGT00940000160242 #29	ENSGT00940000154107.a #30	ENSGT00940000154995 #31	ENSGT00390000017863 #32	ENSGT00940000154337 #33	ENSGT00530000063528.A.b #34	ENSGT00940000156869 #36	ENSGT00390000008096.D ##37	ENSGT00940000157121	ENSGT00940000155660.b
Episquamata	ANCESTRAL SPECIES	5	ENSGT00940000158391 #7	ENSGT00940000157527 #8	ENSGT00940000157131.b #9	ENSGT00560000077278.b	ENSGT00940000153704.A #11	ENSGT00940000166753	ENSGT00940000158728 #13	ENSGT00940000157045 #15	ENSGT00940000161037	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00960000189415	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184.q.a ##24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000155985 #27	ENSGT00940000160242 #29	ENSGT00940000154107.a #30	ENSGT00940000154995 #31	ENSGT00390000017863 #32	ENSGT00940000154337 #33	ENSGT00530000063528.A.b #34	ENSGT00940000156869 #36	ENSGT00390000008096.D ##37	ENSGT00940000157121	ENSGT00940000155660.b
Laterata	ANCESTRAL SPECIES	10	ENSGT00940000155488	ENSGT00940000158391 #7	ENSGT00940000157527 #8	ENSGT00940000157131.b #9	ENSGT00560000077278.b	ENSGT00940000153704.A #11	ENSGT00940000166753	ENSGT00940000158728 #13	ENSGT00940000157045 #15	ENSGT00940000161037	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184.q.a ##24	ENSGT00940000159705 #25	ENSGT00940000155611.s	ENSGT00940000156415 #26	ENSGT00940000155985 #27	ENSGT00940000160242 #29	ENSGT00940000154107.a #30	ENSGT00940000154995 #31	ENSGT00390000017863 #32	ENSGT00940000154337 #33	ENSGT00530000063528.A.b #34	ENSGT00940000156869 #36	ENSGT00390000008096.D ##37	ENSGT00940000157121
Common wall lizard	MODERN SPECIES	3	GADL1 (ENSPMRG00000021735) #7	TGFBR2 (ENSPMRG00000021728) #8	RBMS3 (ENSPMRG00000021716) #9	ZCWPW2 (ENSPMRG00000021707)	AZI2 (ENSPMRG00000021698) #11	ENSPMRG00000021691	ENSPMRG00000021680 #13	SLC4A7 (ENSPMRG00000021542) #15	NEK10 (ENSPMRG00000021262)	LRRC3B (ENSPMRG00000021210) #17	ENSPMRG00000021206	OXSM (ENSPMRG00000021198) #18	NGLY1 (ENSPMRG00000021142) #19	TOP2B (ENSPMRG00000021101) #20	RARB (ENSPMRG00000021076) #21	THRB (ENSPMRG00000021053) #22	NR1D2 (ENSPMRG00000021039) #23	ENSPMRG00000021033 ##24	NKIRAS1 (ENSPMRG00000021027) #25	UBE2E2 (ENSPMRG00000021010) #27	ENSPMRG00000021001	ENSPMRG00000020972	SGO1 (ENSPMRG00000020942) #30	ENSPMRG00000020927 #32	KAT2B (ENSPMRG00000020523) #31	ENSPMRG00000020429 #32	RAB5A (ENSPMRG00000020406) #33	EFHB (ENSPMRG00000020396) #34	KCNH8 (ENSPMRG00000020383) #36	ENSPMRG00000020377	ENSPMRG00000020366 ##37
Argentine black and white tegu	MODERN SPECIES	5	STT3B (ENSSMRG00000010495)	GADL1 (ENSSMRG00000010533) #7	TGFBR2 (ENSSMRG00000010534) #8	RBMS3 (ENSSMRG00000010745) #9	ZCWPW2 (ENSSMRG00000010784)	AZI2 (ENSSMRG00000010796) #11	ENSSMRG00000010891	EOMES (ENSSMRG00000010895) #13	SLC4A7 (ENSSMRG00000011020) #15	NEK10 (ENSSMRG00000011026)	LRRC3B (ENSSMRG00000011046) #17	OXSM (ENSSMRG00000011081) #18	NGLY1 (ENSSMRG00000011082) #19	TOP2B (ENSSMRG00000011169) #20	RARB (ENSSMRG00000011342) #21	THRB (ENSSMRG00000011399) #22	NR1D2 (ENSSMRG00000011404) #23	RPL15 (ENSSMRG00000011408) #24	UBE2E1 (ENSSMRG00000011452) #26	ENSSMRG00000011454	UBE2E2 (ENSSMRG00000011494) #27	ENSSMRG00000011496	ZNF385D (ENSSMRG00000011619) #29	SGO1 (ENSSMRG00000011637) #30	KAT2B (ENSSMRG00000011638) #31	PP2D1 (ENSSMRG00000011639) #32	RAB5A (ENSSMRG00000011640) #33	EFHB (ENSSMRG00000011641) #34	ENSSMRG00000011642	KCNH8 (ENSSMRG00000011744) #36	ENSSMRG00000011745
Toxicofera	ANCESTRAL SPECIES	4	ENSGT00940000158391 #7	ENSGT00940000157527 #8	ENSGT00940000157131.b #9	ENSGT00560000077278.b	ENSGT00940000153704.A #11	ENSGT00940000166753	ENSGT00940000158728 #13	ENSGT00940000157045 #15	ENSGT00940000161037	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00960000189415	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184.q.a ##24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000155985 #27	ENSGT00940000160242 #29	ENSGT01080000259642	ENSGT00940000154107.a #30	ENSGT00940000154995 #31	ENSGT00390000017863 #32	ENSGT00940000154337 #33	ENSGT00530000063528.A.b #34	ENSGT00940000156869 #36	ENSGT00390000008096.D ##37	ENSGT00940000157121
Elapidae	ANCESTRAL SPECIES	5	ENSGT00940000158391 #7	ENSGT00940000157527.c #8	ENSGT00940000157131.b #9	ENSGT00560000077278.b	ENSGT00940000153704.A #11	ENSGT00940000166753	ENSGT00940000158728 #13	ENSGT00940000157045 #15	ENSGT00940000161037	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00960000189415	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b.o.a.a #23	ENSGT00940000155168.a.b.o.a.b #23	ENSGT00910000144184.q.a ##24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000155985.bc.b #27	ENSGT00940000160242 #29	ENSGT01080000259642	ENSGT00940000154107.a #30	ENSGT00940000154995 #31	ENSGT00390000017863 #32	ENSGT00940000154337 #33	ENSGT00530000063528.A.b #34	ENSGT00940000156869 #36	ENSGT00390000008096.D ##37
Indian cobra	MODERN SPECIES	337	RBMS3 (ENSNNAG00000010487) #9	ZCWPW2 (ENSNNAG00000010446)	AZI2 (ENSNNAG00000009847) #11	ENSNNAG00000009793	ENSNNAG00000009768	EOMES (ENSNNAG00000009733) #13	SLC4A7 (ENSNNAG00000009124) #15	NEK10 (ENSNNAG00000008964)	LRRC3B (ENSNNAG00000008947) #17	OXSM (ENSNNAG00000008938) #18	ENSNNAG00000008919	NGLY1 (ENSNNAG00000008737) #19	ENSNNAG00000008610 #20	ENSNNAG00000008594 #20	RARB (ENSNNAG00000008295) #21	THRB (ENSNNAG00000008102) #22	ENSNNAG00000008077 #23	ENSNNAG00000008042 #23	ENSNNAG00000008015 ##24	NKIRAS1 (ENSNNAG00000007928) #25	UBE2E1 (ENSNNAG00000007898) #26	UBE2E2 (ENSNNAG00000007835) #27	ZNF385D (ENSNNAG00000007668) #29	ENSNNAG00000007619	ENSNNAG00000007592	ENSNNAG00000015681 #31	PP2D1 (ENSNNAG00000015660) #32	RAB5A (ENSNNAG00000015651) #33	EFHB (ENSNNAG00000015590) #34	ENSNNAG00000015574	KCNH8 (ENSNNAG00000015540) #36
Elapidae_a	ANCESTRAL SPECIES	19	ENSGT00940000155488.d	ENSGT00940000158391 #7	ENSGT00940000157527.c #8	ENSGT00940000157131.b #9	ENSGT00560000077278.b	ENSGT00940000153704.A #11	ENSGT00940000166753	ENSGT00940000158728 #13	ENSGT00940000157045 #15	ENSGT00940000161037	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b.o.a.a #23	ENSGT00940000155168.a.b.o.a.b #23	ENSGT00910000144184.q.a ##24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000155985.bc.b #27	ENSGT00940000160242 #29	ENSGT01080000259642	ENSGT00940000154107.a #30	ENSGT00940000154995 #31	ENSGT00390000017863 #32	ENSGT00940000154337 #33	ENSGT00940000156869 #36	ENSGT00390000008096.D ##37	ENSGT00940000157121
Acanthophiinae	ANCESTRAL SPECIES	19	ENSGT00940000155488.d	ENSGT00940000158391 #7	ENSGT00940000157527.c #8	ENSGT00940000157131.b #9	ENSGT00560000077278.b	ENSGT00940000153704.A #11	ENSGT00940000166753	ENSGT00940000158728 #13	ENSGT00940000157045 #15	ENSGT00940000161037	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b.o.a.a #23	ENSGT00940000155168.a.b.o.a.b #23	ENSGT00910000144184.q.a ##24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000155985.bc.b #27	ENSGT00940000160242 #29	ENSGT01080000259642	ENSGT00940000154995 #31	ENSGT00390000017863 #32	ENSGT00940000154337 #33	ENSGT00940000156869 #36	ENSGT00390000008096.D ##37	ENSGT00940000157121	ENSGT00940000155660.b
Mainland tiger snake	DUPLICATION
Mainland tiger snake	MODERN SPECIES	259																ENSNSUG00000018940 #22	ENSNSUG00000018939 #22	ENSNSUG00000018938 #23	ENSNSUG00000018937 #23	ENSNSUG00000018936 ##24	NKIRAS1 (ENSNSUG00000018935) #25	UBE2E1 (ENSNSUG00000018934) #26	UBE2E2 (ENSNSUG00000018932) #27	ENSNSUG00000018931 #27
Mainland tiger snake	MODERN SPECIES	259															ENSNSUG00000018940 #22	ENSNSUG00000018939 #22	ENSNSUG00000018938 #23	ENSNSUG00000018937 #23	ENSNSUG00000018936 ##24	NKIRAS1 (ENSNSUG00000018935) #25	UBE2E1 (ENSNSUG00000018934) #26	UBE2E2 (ENSNSUG00000018932) #27	ENSNSUG00000018931 #27
Eastern brown snake	MODERN SPECIES	38	TGFBR2 (ENSPTXG00000010784) #8	ENSPTXG00000010867	RBMS3 (ENSPTXG00000010870) #9	ZCWPW2 (ENSPTXG00000010873)	ENSPTXG00000010876	AZI2 (ENSPTXG00000010887) #11	EOMES (ENSPTXG00000011094) #13	SLC4A7 (ENSPTXG00000011117) #15	NEK10 (ENSPTXG00000015905)	LRRC3B (ENSPTXG00000015908) #17	OXSM (ENSPTXG00000015909) #18	NGLY1 (ENSPTXG00000015910) #19	TOP2B (ENSPTXG00000015912) #20	RARB (ENSPTXG00000015913) #21	ENSPTXG00000015914	THRB (ENSPTXG00000015915) #22	NR1D2 (ENSPTXG00000015916) #23	ENSPTXG00000015917 ##24	NKIRAS1 (ENSPTXG00000015918) #25	UBE2E1 (ENSPTXG00000015919) #26	UBE2E2 (ENSPTXG00000015920) #27	ZNF385D (ENSPTXG00000015922) #29	ENSPTXG00000015925	ENSPTXG00000015926 #31	PP2D1 (ENSPTXG00000015930) #32	RAB5A (ENSPTXG00000015932) #33	ENSPTXG00000015936	KCNH8 (ENSPTXG00000015941) #36	ENSPTXG00000015948 ##37	TBC1D5 (ENSPTXG00000015950)	PLCL2 (ENSPTXG00000015954)
Blue-lipped sea krait	MODERN SPECIES	8959																THRB (ENSLLTG00000012450) #22
Lizard	MODERN SPECIES	971																THRB (ENSACAG00000011465) #22	NR1D2 (ENSACAG00000011374) #23	RPL15 (ENSACAG00000035271) #24	NKIRAS1 (ENSACAG00000011317) #25	UBE2E1 (ENSACAG00000038143) #26	ENSACAG00000041890	ENSACAG00000044384	UBE2E2 (ENSACAG00000011265) #27
tuatara	MODERN SPECIES	1530												OXSM (ENSSPUG00000010547) #18	NGLY1 (ENSSPUG00000010561) #19	TOP2B (ENSSPUG00000010592) #20	RARB (ENSSPUG00000010661) #21	THRB (ENSSPUG00000010763) #22	NR1D2 (ENSSPUG00000010789) #23	ENSSPUG00000010807 ##24	NKIRAS1 (ENSSPUG00000010820) #25	UBE2E1 (ENSSPUG00000010846) #26	UBE2E2 (ENSSPUG00000010889) #27	ENSSPUG00000011016 #27
Anura	ANCESTRAL SPECIES	12	ENSGT00940000157880	ENSGT00940000155488	ENSGT00940000158391 #7	ENSGT00940000157527 #8	ENSGT00940000157131.b #9	ENSGT00940000153704.A #11	ENSGT00390000018696 #12	ENSGT00940000158728 #13	ENSGT00940000157045 #15	ENSGT00940000161037	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT01100000266357	ENSGT00910000144184 #24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000155985 #27	ENSGT00940000160242 #29	ENSGT00940000154107.b ##30	ENSGT00940000154995 #31	ENSGT00390000017863 #32	ENSGT00940000154337 #33	ENSGT00530000063528.A.b #34	ENSGT00940000156869 #36	ENSGT00390000008096.D ##37	ENSGT00940000157121
Frog	MODERN SPECIES	6	rbms3 (ENSXETG00000032055) #9	azi2 (ENSXETG00000016774) #11	cmc1 (ENSXETG00000047603) #12	ENSXETG00000042058	eomes (ENSXETG00000019924) #13	slc4a7 (ENSXETG00000019911) #15	nek10 (ENSXETG00000019906)	lrrc3b (ENSXETG00000019904) #17	oxsm (ENSXETG00000019896) #18	ngly1 (ENSXETG00000041327) #19	top2b (ENSXETG00000007282) #20	ENSXETG00000048004	rarb (ENSXETG00000007272) #21	ENSXETG00000046943	ENSXETG00000041807	thrb (ENSXETG00000003871) #22	ENSXETG00000046534	nr1d2 (ENSXETG00000003869) #23	nkiras1 (ENSXETG00000046335) #25	rpl15 (ENSXETG00000003870) #24	ENSXETG00000042125	ube2e2 (ENSXETG00000026975) #27	ENSXETG00000041572	znf385d (ENSXETG00000036898) #29	ENSXETG00000048515	sgo1 (ENSXETG00000014009) ##30	kat2b (ENSXETG00000014008) #31	pp2d1 (ENSXETG00000038157) #32	rab5a (ENSXETG00000002305) #33	efhb (ENSXETG00000033308) #34	kcnh8 (ENSXETG00000014005) #36
Leishan spiny toad	MODERN SPECIES	8	PEX1 (ENSLLEG00000021051)	RBM48 (ENSLLEG00000020935)	ENSLLEG00000020516	RPL14 (ENSLLEG00000020315)	ENTPD3 (ENSLLEG00000020143)	GGCT (ENSLLEG00000020077)	NOD1 (ENSLLEG00000019941)	ZNRF2 (ENSLLEG00000019867)	MTURN (ENSLLEG00000019815)	EAF1 (ENSLLEG00000019732)	METTL6 (ENSLLEG00000019595)	ENSLLEG00000019556	ENSLLEG00000019534	ENSLLEG00000019485	ENSLLEG00000019452	THRB (ENSLLEG00000017823) #22	NR1D2 (ENSLLEG00000017650) #23	ENSLLEG00000017617	ENSLLEG00000017536 #24	NKIRAS1 (ENSLLEG00000017358) #25	ENSLLEG00000017108 #26	UBE2E2 (ENSLLEG00000016792) #27	ENSLLEG00000016737	ZNF385D (ENSLLEG00000016577) #29	ENSLLEG00000016364 ##30	ENSLLEG00000016259	KAT2B (ENSLLEG00000014888) #31	ENSLLEG00000014797	PP2D1 (ENSLLEG00000014763) #32	ENSLLEG00000014742	RAB5A (ENSLLEG00000014688) #33
Coelacanth	MODERN SPECIES	1377															ENSLACG00000012368	THRB (ENSLACG00000005559) #22	NR1D2 (ENSLACG00000003212) #23	RPL15 (ENSLACG00000001914) #24
Actinopterygii	ANCESTRAL SPECIES	2	ENSGT00940000163607	ENSGT00390000002142	ENSGT00390000013383	ENSGT00940000162490	ENSGT00940000155994	ENSGT00390000008749.e	ENSGT00390000004417.a	ENSGT00390000009677	ENSGT00940000154222.d.b	ENSGT00940000161037	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184 #24	ENSGT00940000171014	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000165358	ENSGT00940000165550.a.b	ENSGT00940000155985 #27	ENSGT00940000160242 #29	ENSGT00940000154107.b ##30	ENSGT00940000154995 #31	ENSGT00390000017863 #32	ENSGT00940000154337 #33	ENSGT00530000063528.A.b #34	ENSGT00940000156869 #36
Neopterygii	ANCESTRAL SPECIES	34	ENSGT00940000157173	ENSGT00940000163607	ENSGT00390000013383	ENSGT00940000162490	ENSGT00940000155994	ENSGT00390000008749.e	ENSGT00390000004417.a	ENSGT00390000009677	ENSGT00940000154222.d.b	ENSGT00940000161037	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196 #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184 #24	ENSGT00940000171014	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000155985 #27	ENSGT00940000160242 #29	ENSGT00940000154107.b ##30	ENSGT00940000154995 #31	ENSGT00390000017863 #32	ENSGT00940000154337 #33	ENSGT00530000063528.A.b #34	ENSGT00940000156869 #36	ENSGT00390000008096.C ##37	ENSGT00940000157121
Osteoglossocephalai	ANCESTRAL SPECIES	37	ENSGT00390000008029	ENSGT00940000163195.A.d	ENSGT00940000164651.a.a	ENSGT00390000010029	ENSGT00390000002457	ENSGT00390000001994	ENSGT00390000008749.e	ENSGT00390000004417.a	ENSGT00390000009677	ENSGT00940000154222.d.b	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196.b #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00940000171014	ENSGT00910000144184 #24	ENSGT00940000159705 #25	ENSGT00940000165550.a.a	ENSGT00940000160242.b #29	ENSGT00940000154107.b ##30	ENSGT00940000154995 #31	ENSGT00940000154337 #33	ENSGT00530000063528.A.b #34	ENSGT00940000176137	ENSGT00940000156869 #36	ENSGT00390000008096.C ##37	ENSGT00940000157121	ENSGT00940000155660.b
Osteoglossiformes	ANCESTRAL SPECIES	9	ENSGT00390000008029	ENSGT00940000163195.A.d	ENSGT00940000164651.a.a	ENSGT00390000010029	ENSGT00390000002457	ENSGT00390000001994	ENSGT00390000008749.e	ENSGT00390000004417.a	ENSGT00390000009677.q	ENSGT00940000154222.d.b.i	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196.b #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00940000171014	ENSGT00910000144184 #24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000165550.a.a	ENSGT00940000160242.b #29	ENSGT00940000154107.b ##30	ENSGT00940000154995 #31	ENSGT00940000154337.d #33	ENSGT00940000156869 #36	ENSGT00390000008096.C.d ##37	ENSGT00940000157121	ENSGT00940000155660.b.c	ENSGT00530000063480.b
Asian bonytongue	MODERN SPECIES	15	rpa3 (ENSSFOG00015029209)	ENSSFOG00015015066	c1galt1a (ENSSFOG00015015053)	sdhaf3 (ENSSFOG00015029967)	tac1 (ENSSFOG00015015017)	asns (ENSSFOG00015014978)	anln (ENSSFOG00015014631)	MATCAP2 (ENSSFOG00015014607)	eepd1 (ENSSFOG00015024809)	SEPTIN7 (ENSSFOG00015014528)	lrrc3b (ENSSFOG00015015056) #17	OXSM (ENSSFOG00015015042) #18	ngly1 (ENSSFOG00015015019) #19	top2b (ENSSFOG00015014944) #20	RARB (ENSSFOG00015014915) #21	thrb (ENSSFOG00015026437) #22	nr1d2b (ENSSFOG00015014807) #23	rpl15 (ENSSFOG00015030914) #24	ENSSFOG00015014798	nkiras1 (ENSSFOG00015014781) #25	ENSSFOG00015014592	ENSSFOG00015014622	ENSSFOG00015014573 ##30	kat2b (ENSSFOG00015014534) #31	RAB5A (ENSSFOG00015029671) #33	KCNH8 (ENSSFOG00015014501) #36	ENSSFOG00015014430 ##37	tbc1d5 (ENSSFOG00015014297)	PLCL2 (ENSSFOG00015014254)	dazl (ENSSFOG00015014199)	ENSSFOG00015014187
P. kingsleyae	MODERN SPECIES	95	umad1 (ENSPKIG00000010508)	rpa3 (ENSPKIG00000010490)	ENSPKIG00000010444	sdhaf3 (ENSPKIG00000010418)	tac1 (ENSPKIG00000010384)	asns (ENSPKIG00000010350)	anln (ENSPKIG00000010284)	MATCAP2 (ENSPKIG00000010249)	eepd1 (ENSPKIG00000010206)	SEPTIN7 (ENSPKIG00000010114)	lrrc3b (ENSPKIG00000010062) #17	OXSM (ENSPKIG00000010056) #18	ngly1 (ENSPKIG00000010026) #19	ENSPKIG00000010011 #20	RARB (ENSPKIG00000009963) #21	thrb (ENSPKIG00000009906) #22	nr1d2b (ENSPKIG00000009878) #23	ENSPKIG00000009867	rpl15 (ENSPKIG00000009854) #24	nkiras1 (ENSPKIG00000009837) #25	UBE2E1 (ENSPKIG00000009822) #26	ENSPKIG00000009790	ZNF385D (ENSPKIG00000009689) #29	ENSPKIG00000009664 ##30	kat2b (ENSPKIG00000009612) #31	rab5ab (ENSPKIG00000009578) #33	KCNH8 (ENSPKIG00000009502) #36	ENSPKIG00000009394 ##37	ENSPKIG00000009338	tbc1d5 (ENSPKIG00000009255)	PLCL2 (ENSPKIG00000009187)
Clupeocephala	ANCESTRAL SPECIES	19	ENSGT00940000163195.A.d	ENSGT00940000165423.b	ENSGT00940000164651.a.a	ENSGT00390000010029	ENSGT00390000002457	ENSGT00390000001994	ENSGT00390000008749.e	ENSGT00390000004417.a	ENSGT00390000009677	ENSGT00940000154222.d.b	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196.b #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184 #24	ENSGT00940000171014	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000165358	ENSGT00940000165550.a.b.a.b	ENSGT00940000165550.a.a	ENSGT00530000063402.a	ENSGT00390000016054.b.j	ENSGT00940000153295.a.b	ENSGT00940000158412	ENSGT00390000010045.t	ENSGT00940000156115.c	ENSGT00940000165224.a.a
Euteleosteomorpha	ANCESTRAL SPECIES	12	ENSGT00940000163195.A.d	ENSGT00940000165423.b	ENSGT00940000164651.a.a	ENSGT00390000010029	ENSGT00390000002457	ENSGT00390000001994	ENSGT00390000008749.e	ENSGT00390000004417.a	ENSGT00390000009677	ENSGT00940000154222.d.b	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196.b #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00940000171014	ENSGT00910000144184 #24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000165550.a.a	ENSGT00530000063402.a	ENSGT00390000016054.b.j	ENSGT00940000153295.a.b	ENSGT00940000158412	ENSGT00390000010045.t	ENSGT00940000156115.c	ENSGT00940000165224.a.a	ENSGT00410000025651.B	ENSGT00530000063624.C.a
Acanthomorphata	ANCESTRAL SPECIES	61	ENSGT00940000163195.A.d	ENSGT00940000165423.b	ENSGT00940000164651.a.a	ENSGT00390000010029	ENSGT00390000002457	ENSGT00390000001994	ENSGT00390000008749.e	ENSGT00390000004417.a	ENSGT00390000009677	ENSGT00940000154222.d.b	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196.b #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00940000171014	ENSGT00910000144184 #24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000165550.a.a	ENSGT00530000063402.a	ENSGT00390000016054.b.j	ENSGT00940000153295.a.b	ENSGT00940000158412	ENSGT00390000010045.t	ENSGT00940000156115.c	ENSGT00940000165224.a.a	ENSGT00410000025651.B	ENSGT00530000063624.C.a
Euacanthomorphacea	ANCESTRAL SPECIES		ENSGT00940000163195.A.d	ENSGT00940000165423.b	ENSGT00940000164651.a.a	ENSGT00390000010029	ENSGT00390000002457	ENSGT00390000001994	ENSGT00390000008749.e	ENSGT00390000004417.a	ENSGT00390000009677	ENSGT00940000154222.d.b	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196.b #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00940000171014	ENSGT00910000144184 #24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000165550.a.a	ENSGT00530000063402.a	ENSGT00390000016054.b.j	ENSGT00940000153295.a.b	ENSGT00940000158412	ENSGT00390000010045.t	ENSGT00940000156115.c	ENSGT00940000165224.a.a	ENSGT00410000025651.B	ENSGT00530000063624.C.a
Pinecone sodierfish	MODERN SPECIES	2	umad1 (ENSMMDG00005018727)	rpa3 (ENSMMDG00005018726)	c1galt1a (ENSMMDG00005018725)	sdhaf3 (ENSMMDG00005018723)	tac1 (ENSMMDG00005018721)	asns (ENSMMDG00005018720)	anln (ENSMMDG00005018709)	MATCAP2 (ENSMMDG00005018707)	eepd1 (ENSMMDG00005018706)	septin7a (ENSMMDG00005018222)	lrrc3b (ENSMMDG00005018213) #17	OXSM (ENSMMDG00005018212) #18	ngly1 (ENSMMDG00005018179) #19	top2b (ENSMMDG00005008636) #20	RARB (ENSMMDG00005008540) #21	thrb (ENSMMDG00005008240) #22	nr1d2b (ENSMMDG00005008219) #23	rpl15 (ENSMMDG00005008214) #24	nkiras1 (ENSMMDG00005008211) #25	ENSMMDG00005008206	sf3a3 (ENSMMDG00005008193)	ENSMMDG00005008190	maneal (ENSMMDG00005008189)	lin28ab (ENSMMDG00005008165)	pdik1l (ENSMMDG00005008162)	ENSMMDG00005008156	ppp1r8a (ENSMMDG00005008153)	foxo6b (ENSMMDG00005008140)	cited4a (ENSMMDG00005008139)	ctps1a (ENSMMDG00005008124)	rab42a (ENSMMDG00005008108)
Percomorphaceae	ANCESTRAL SPECIES	10	ENSGT00940000163195.A.d	ENSGT00940000165423.b	ENSGT00940000164651.a.a	ENSGT00390000010029	ENSGT00390000002457	ENSGT00390000001994	ENSGT00390000008749.e	ENSGT00390000004417.a	ENSGT00390000009677	ENSGT00940000154222.d.b	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196.b #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00940000171014	ENSGT00910000144184 #24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000165550.a.a	ENSGT00530000063402.a	ENSGT00390000016054.b.j	ENSGT00940000153295.a.b	ENSGT00940000158412	ENSGT00390000010045.t	ENSGT00940000156115.c	ENSGT00940000165224.a.a	ENSGT00410000025651.B	ENSGT00530000063624.C.a
Tiger tail seahorse	DUPLICATION
Tiger tail seahorse	MODERN SPECIES	224																thrb (ENSHCOG00000000231) #22
Tiger tail seahorse	MODERN SPECIES	490							ENSHCOG00000000427 #20	ENSHCOG00000000424 #20	tac1 (ENSHCOG00000000422)	asns (ENSHCOG00000015265)	ENSHCOG00000015243	anln (ENSHCOG00000015226)	stmn1a (ENSHCOG00000015219)	gmeb1 (ENSHCOG00000015192)	ENSHCOG00000015181	thrb (ENSHCOG00000015168) #22	ENSHCOG00000015131	rpl15 (ENSHCOG00000015120) #24	sf3a3 (ENSHCOG00000015109)	rpa3 (ENSHCOG00000015064)	ENSHCOG00000015060	ENSHCOG00000015041	phf14 (ENSHCOG00000015030)	nxph1 (ENSHCOG00000014996)	ENSHCOG00000014987	thsd7aa (ENSHCOG00000014903)	tmem106bb (ENSHCOG00000014834)	arl4ab (ENSHCOG00000014829)	meox2b (ENSHCOG00000014805)	trnau1apa (ENSHCOG00000014770)	SACM1L (ENSHCOG00000014739)
Percomorphaceae_B	ANCESTRAL SPECIES	15	ENSGT00940000163195.A.d	ENSGT00940000165423.b	ENSGT00940000164651.a.a	ENSGT00390000010029	ENSGT00390000002457	ENSGT00390000001994	ENSGT00390000008749.e	ENSGT00390000004417.a	ENSGT00390000009677	ENSGT00940000154222.d.b	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196.b #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00940000171014	ENSGT00910000144184 #24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000165550.a.b.a.a	ENSGT00940000165550.a.a	ENSGT00530000063402.a	ENSGT00390000016054.b.j	ENSGT00940000153295.a.b	ENSGT00940000158412	ENSGT00390000010045.t	ENSGT00940000156115.c	ENSGT00940000165224.a.a	ENSGT00410000025651.B
Ovalentaria	ANCESTRAL SPECIES	12	ENSGT00940000163195.A.d	ENSGT01090000260131.c	ENSGT00940000164651.a.a	ENSGT00390000010029	ENSGT00390000002457	ENSGT00390000001994	ENSGT00390000008749.e	ENSGT00390000004417.a	ENSGT00390000009677	ENSGT00940000154222.d.b	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196.b #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00940000171014	ENSGT00910000144184 #24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000165550.a.b.a.a	ENSGT00940000165550.a.a	ENSGT00530000063402.a	ENSGT00390000016054.b.j.c.b	ENSGT00390000016054.b.j.d	ENSGT00940000153295.a.b	ENSGT00940000158412	ENSGT00390000010045.t	ENSGT00940000156115.c	ENSGT00940000165224.a.a
Ovalentaria_B	ANCESTRAL SPECIES	15	ENSGT00940000163195.A.d	ENSGT01090000260131.c	ENSGT00940000164651.a.a	ENSGT00390000010029	ENSGT00390000002457	ENSGT00390000001994	ENSGT00390000008749.e	ENSGT00390000004417.a	ENSGT00390000009677	ENSGT00940000154222.d.b	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196.b #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00940000171014	ENSGT00910000144184 #24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000165550.a.b.a.a	ENSGT00940000165550.a.a	ENSGT00530000063402.a	ENSGT00390000016054.b.j.d	ENSGT00940000153295.a.b	ENSGT00940000158412	ENSGT00390000010045.t	ENSGT00940000156115.c	ENSGT00940000165224.a.a	ENSGT00530000063624.C.a
Cichlidae	ANCESTRAL SPECIES	7	ENSGT00390000008274	ENSGT00940000164585.c.a.a.b	ENSGT00390000014273.b	ENSGT00940000154879	ENSGT00940000175914	ENSGT00940000154870.A.b	ENSGT00940000176166	ENSGT00730000111394	ENSGT00940000158341.a	ENSGT01030000234542.b.a.a.a.a	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196.b #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00940000171014	ENSGT00910000144184 #24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000165550.a.b.a.a	ENSGT00940000165550.a.a	ENSGT00530000063402.a	ENSGT00390000016054.b.j.d	ENSGT00390000016054.b.j.c.a	ENSGT00940000158412	ENSGT00940000182536	ENSGT00940000165224.a.a	ENSGT00530000063624.C.a	ENSGT00910000144179.b.b.o.b
Midas cichlid	MODERN SPECIES	1293									arhgef1a (ENSACIG00000008347)	ENSACIG00000008391	lrrc3b (ENSACIG00000008412) #17	OXSM (ENSACIG00000008416) #18	ngly1 (ENSACIG00000008434) #19	top2b (ENSACIG00000008576) #20	RARB (ENSACIG00000008739) #21	thrb (ENSACIG00000008762) #22	nr1d2b (ENSACIG00000008789) #23	rpl15 (ENSACIG00000008813) #24	ENSACIG00000009007	nkiras1 (ENSACIG00000009013) #25	UBE2E1 (ENSACIG00000009029) #26	ENSACIG00000009047	sf3a3 (ENSACIG00000009061)	maneal (ENSACIG00000009099)
Pseudocrenilabrinae	ANCESTRAL SPECIES	31	ENSGT00390000008274	ENSGT00940000164585.c.a.a.b	ENSGT00390000014273.b	ENSGT00940000154879	ENSGT00940000175914	ENSGT00940000154870.A.b	ENSGT00940000176166	ENSGT00730000111394	ENSGT00940000158341.a	ENSGT01030000234542.b.a.a.a.a	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196.b #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00940000171014	ENSGT00910000144184 #24	ENSGT00940000159705 #25	ENSGT00940000165550.a.b.a.a	ENSGT00940000165550.a.a	ENSGT00530000063402.a	ENSGT00390000016054.b.j.d	ENSGT00390000016054.b.j.c.a	ENSGT00940000158412	ENSGT00940000165224.a.a	ENSGT00390000018319.b.b	ENSGT00940000163854.a.b	ENSGT00550000075028	ENSGT00940000164559.A
Nile tilapia	MODERN SPECIES	13															ENSONIG00000030557	thrb (ENSONIG00000010312) #22	nr1d2b (ENSONIG00000010308) #23	rpl15 (ENSONIG00000010307) #24	nkiras1 (ENSONIG00000027770) #25	ENSONIG00000010300	sf3a3 (ENSONIG00000010296)	maneal (ENSONIG00000016209)	ENSONIG00000028164	pdik1l (ENSONIG00000028611)	foxo6b (ENSONIG00000010293)	ENSONIG00000029247	ENSONIG00000041252	ENSONIG00000038858	ENSONIG00000033342	ENSONIG00000033999	ENSONIG00000029535
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	41	ENSGT00390000008274	ENSGT00940000164585.c.a.a.b	ENSGT00390000014273.b	ENSGT00940000154879	ENSGT00940000175914	ENSGT00940000154870.A.b	ENSGT00940000176166	ENSGT00730000111394	ENSGT00940000158341.a	ENSGT01030000234542.b.a.a.a.a	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196.b #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00940000171014	ENSGT00910000144184 #24	ENSGT00940000159705 #25	ENSGT00940000165550.a.b.a.a	ENSGT00940000165550.a.a	ENSGT00530000063402.a	ENSGT00390000016054.b.j.d	ENSGT00390000016054.b.j.c.a	ENSGT00940000158412	ENSGT00940000165224.a.a	ENSGT00950000182774.b.a.b.a.b.a.a.a.b.b.c.a	ENSGT00390000018319.b.b	ENSGT00940000163854.a.b	ENSGT00550000075028
Lyretail cichlid	MODERN SPECIES	525																thrb (ENSNBRG00000006722) #22	nr1d2b (ENSNBRG00000006586) #23	rpl15 (ENSNBRG00000006570) #24	nkiras1 (ENSNBRG00000006552) #25	ENSNBRG00000006522	sf3a3 (ENSNBRG00000006491)	ENSNBRG00000006463	pdik1l (ENSNBRG00000006444)	foxo6b (ENSNBRG00000006430)	ENSNBRG00000006411
Haplochromini	ANCESTRAL SPECIES	47	ENSGT00390000008274	ENSGT00940000164585.c.a.a.b	ENSGT00390000014273.b	ENSGT00940000154879	ENSGT00940000175914	ENSGT00940000154870.A.b	ENSGT00940000176166	ENSGT00730000111394	ENSGT00940000158341.a	ENSGT01030000234542.b.a.a.a.a	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196.b #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00940000171014	ENSGT00910000144184 #24	ENSGT00940000159705 #25	ENSGT00940000165550.a.b.a.a	ENSGT00940000165550.a.a	ENSGT00530000063402.a	ENSGT00390000016054.b.j.d	ENSGT00940000158412	ENSGT00940000165224.a.a	ENSGT00950000182774.b.a.b.a.b.a.a.a.b.b.c.a	ENSGT00390000018319.b.b	ENSGT00940000163854.a.b	ENSGT00550000075028	ENSGT01000000214440.A.a.b.a.g.a
Burton s mouthbrooder	MODERN SPECIES	1655																thrb (ENSHBUG00000013451) #22
Haplochromini_A	ANCESTRAL SPECIES	53	ENSGT00390000008274	ENSGT00940000164585.c.a.a.b	ENSGT00390000014273.b	ENSGT00940000154879	ENSGT00940000175914	ENSGT00940000154870.A.b	ENSGT00940000176166	ENSGT00730000111394	ENSGT00940000158341.a	ENSGT01030000234542.b.a.a.a.a	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196.b #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00940000171014	ENSGT00910000144184 #24	ENSGT00940000159705 #25	ENSGT00940000165550.a.b.a.a	ENSGT00940000165550.a.a	ENSGT00530000063402.a	ENSGT00390000016054.b.j.d	ENSGT00940000158412	ENSGT00940000165224.a.a	ENSGT00950000182774.b.a.b.a.b.a.a.a.b.b.c.a	ENSGT00390000018319.b.b	ENSGT00940000163854.a.b	ENSGT00550000075028	ENSGT01000000214440.A.a.b.a.g.a
P. nyererei	MODERN SPECIES	527											OXSM (ENSPNYG00000001092) #18	ngly1 (ENSPNYG00000001084) #19	top2b (ENSPNYG00000001066) #20	RARB (ENSPNYG00000001016) #21	ENSPNYG00000000997	thrb (ENSPNYG00000000955) #22	nr1d2b (ENSPNYG00000000928) #23	ENSPNYG00000000917	rpl15 (ENSPNYG00000000900) #24	nkiras1 (ENSPNYG00000000881) #25	ENSPNYG00000000856	ENSPNYG00000000832	sf3a3 (ENSPNYG00000000786)	maneal (ENSPNYG00000000771)	maneal (ENSPNYG00000000766)	pdik1l (ENSPNYG00000000753)	foxo6b (ENSPNYG00000000739)	ENSPNYG00000000713
Haplochromini_B	ANCESTRAL SPECIES	1	ENSGT00390000008274	ENSGT00940000164585.c.a.a.b	ENSGT00390000014273.b	ENSGT00940000154879	ENSGT00940000175914	ENSGT00940000154870.A.b	ENSGT00940000176166	ENSGT00730000111394	ENSGT00940000158341.a	ENSGT01030000234542.b.a.a.a.a	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196.b #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00940000171014	ENSGT00910000144184 #24	ENSGT00940000159705 #25	ENSGT00940000165550.a.b.a.a	ENSGT00940000165550.a.a	ENSGT00530000063402.a	ENSGT00390000016054.b.j.d	ENSGT00940000158412	ENSGT00940000165224.a.a	ENSGT00950000182774.b.a.b.a.b.a.a.a.b.b.c.a	ENSGT00940000154715.b	ENSGT00940000176971.d	ENSGT00390000018319.b.b	ENSGT00940000163854.a.b
Zebra mbuna	MODERN SPECIES	1104	ENSMZEG00005017490	ENSMZEG00005017487	ENSMZEG00005017485	ENSMZEG00005017479	ENSMZEG00005017478	ENSMZEG00005017470	ARHGEF2 (ENSMZEG00005017465)	ENSMZEG00005017458	lrrc3b (ENSMZEG00005017450) #17	OXSM (ENSMZEG00005017447) #18	ngly1 (ENSMZEG00005017421) #19	top2b (ENSMZEG00005017395) #20	ENSMZEG00005017387	RARB (ENSMZEG00005017097) #21	ENSMZEG00005017071	thrb (ENSMZEG00005017053) #22	nr1d2b (ENSMZEG00005017041) #23	ENSMZEG00005017036	rpl15 (ENSMZEG00005017031) #24	nkiras1 (ENSMZEG00005017026) #25	ENSMZEG00005017014	ENSMZEG00005017008	ENSMZEG00005017001	sf3a3 (ENSMZEG00005016987)	maneal (ENSMZEG00005016982)	pdik1l (ENSMZEG00005016979)	foxo6b (ENSMZEG00005016975)	ENSMZEG00005016970	ENSMZEG00005016963	ENSMZEG00005016956	ENSMZEG00005016934
Eastern happy	MODERN SPECIES	13	pex11b (ENSACLG00000017141)	ilf2 (ENSACLG00000017159)	si:dkey-81h8.1 (ENSACLG00000017202)	ENSACLG00000017221	ENSACLG00000017281	ENSACLG00000017289	ENSACLG00000017302	ARHGEF2 (ENSACLG00000017326)	ENSACLG00000017378	lrrc3b (ENSACLG00000017407) #17	OXSM (ENSACLG00000017418) #18	ngly1 (ENSACLG00000017435) #19	top2b (ENSACLG00000017515) #20	RARB (ENSACLG00000017588) #21	ENSACLG00000017714	thrb (ENSACLG00000017751) #22	ENSACLG00000017812	nr1d2b (ENSACLG00000017819) #23	rpl15 (ENSACLG00000017838) #24	ENSACLG00000017853	nkiras1 (ENSACLG00000017866) #25	ENSACLG00000017928	ENSACLG00000017950	ENSACLG00000017969	sf3a3 (ENSACLG00000017977)	maneal (ENSACLG00000018068)	pdik1l (ENSACLG00000018103)	foxo6b (ENSACLG00000018112)	ENSACLG00000018174	ENSACLG00000018178	ENSACLG00000018184
Pomacentridae	ANCESTRAL SPECIES	7	ENSGT00390000015641	ENSGT00940000160858	ENSGT00390000002381.a	ENSGT00390000010029	ENSGT00390000002457	ENSGT00390000001994	ENSGT00390000008749.e	ENSGT00390000004417.a	ENSGT00390000009677	ENSGT00940000154222.d.b	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196.b #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00940000171014	ENSGT00910000144184 #24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000165550.a.b.a.a	ENSGT00940000165550.a.a	ENSGT00530000063402.a	ENSGT00390000016054.b.j.d	ENSGT00940000153295.a.b	ENSGT00940000158412	ENSGT00390000010045.t	ENSGT00940000156115.c	ENSGT00940000165224.a.a	ENSGT00530000063624.C.a
Bicolor damselfish	MODERN SPECIES	800															ENSSPAG00000008145 #21	thrb (ENSSPAG00000008171) #22
Pomacentridae_A	ANCESTRAL SPECIES	6	ENSGT00390000015641	ENSGT00940000160858	ENSGT00390000002381.a	ENSGT00390000010029	ENSGT00390000002457	ENSGT00390000001994	ENSGT00390000008749.e	ENSGT00390000004417.a	ENSGT00390000009677	ENSGT00940000154222.d.b	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196.b #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00940000171014	ENSGT00910000144184 #24	ENSGT00940000159705 #25	ENSGT00940000165550.a.b.a.a	ENSGT00940000165550.a.a	ENSGT00530000063402.a	ENSGT00390000016054.b.j.d	ENSGT00940000153295.a.b	ENSGT00940000158412	ENSGT00390000010045.t	ENSGT00940000156115.c	ENSGT00940000165224.a.a	ENSGT00530000063624.C.a	ENSGT00910000144179.b.b.o.b
Spiny chromis	MODERN SPECIES	118											lrrc3b (ENSAPOG00000015166) #17	OXSM (ENSAPOG00000015177) #18	ngly1 (ENSAPOG00000015221) #19	top2b (ENSAPOG00000015238) #20	RARB (ENSAPOG00000015318) #21	thrb (ENSAPOG00000015392) #22	nr1d2b (ENSAPOG00000015446) #23	ENSAPOG00000015453	rpl15 (ENSAPOG00000015461) #24	nkiras1 (ENSAPOG00000015479) #25	ENSAPOG00000015509	ENSAPOG00000015536	sf3a3 (ENSAPOG00000015608)	maneal (ENSAPOG00000015619)
Amphiprion	ANCESTRAL SPECIES	34	ENSGT00390000015641	ENSGT00940000160858	ENSGT00390000002381.a	ENSGT00390000010029	ENSGT00390000002457	ENSGT00390000001994	ENSGT00390000008749.e	ENSGT00390000004417.a	ENSGT00390000009677	ENSGT00940000154222.d.b	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196.b #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00940000171014	ENSGT00910000144184 #24	ENSGT00940000159705 #25	ENSGT00940000165550.a.b.a.a	ENSGT00940000165550.a.a	ENSGT00530000063402.a	ENSGT00390000016054.b.j.d	ENSGT00940000153295.a.b	ENSGT00940000158412	ENSGT00390000010045.t	ENSGT00940000156115.c	ENSGT00940000165224.a.a	ENSGT00530000063624.C.a	ENSGT00940000181243
Orange clownfish	MODERN SPECIES	8	ctdp1 (ENSAPEG00000005963)	KCNG2 (ENSAPEG00000005983)	SLC66A2 (ENSAPEG00000005995)	sdhaf3 (ENSAPEG00000006010)	tac1 (ENSAPEG00000006059)	asns (ENSAPEG00000006086)	anln (ENSAPEG00000006156)	MATCAP2 (ENSAPEG00000006425)	eepd1 (ENSAPEG00000006431)	septin7a (ENSAPEG00000006477)	lrrc3b (ENSAPEG00000006562) #17	OXSM (ENSAPEG00000006569) #18	ngly1 (ENSAPEG00000006586) #19	top2b (ENSAPEG00000006606) #20	RARB (ENSAPEG00000006685) #21	thrb (ENSAPEG00000007147) #22	nr1d2b (ENSAPEG00000007165) #23	rpl15 (ENSAPEG00000007180) #24	ENSAPEG00000007200	nkiras1 (ENSAPEG00000007208) #25	ENSAPEG00000007233	ENSAPEG00000007264	sf3a3 (ENSAPEG00000007297)	maneal (ENSAPEG00000007360)	lin28ab (ENSAPEG00000007421)	pdik1l (ENSAPEG00000007495)	ENSAPEG00000007511	ppp1r8a (ENSAPEG00000007528)	foxo6b (ENSAPEG00000007557)	cited4a (ENSAPEG00000007573)	ENSAPEG00000007586
Clown anemonefish	MODERN SPECIES	1359												OXSM (ENSAOCG00000013632) #18	ngly1 (ENSAOCG00000013639) #19	top2b (ENSAOCG00000002484) #20	RARB (ENSAOCG00000013692) #21	thrb (ENSAOCG00000013758) #22	nr1d2b (ENSAOCG00000013812) #23	ENSAOCG00000013824	rpl15 (ENSAOCG00000013835) #24	nkiras1 (ENSAOCG00000013851) #25	ENSAOCG00000013869	ENSAOCG00000013886	sf3a3 (ENSAOCG00000013954)	maneal (ENSAOCG00000013972)	lin28ab (ENSAOCG00000014049)	pdik1l (ENSAOCG00000014068)	ENSAOCG00000014081	ppp1r8a (ENSAOCG00000000915)
Atherinomorphae	ANCESTRAL SPECIES	12	ENSGT00940000163195.A.d	ENSGT01090000260131.c	ENSGT00940000164651.a.a	ENSGT00390000010029	ENSGT00390000002457	ENSGT00390000001994	ENSGT00390000008749.e	ENSGT00390000004417.a	ENSGT00390000009677	ENSGT00940000154222.d.b	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196.b #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00940000171014	ENSGT00910000144184 #24	ENSGT00940000159705 #25	ENSGT00940000165550.a.b.a.a	ENSGT00940000165550.a.a	ENSGT00530000063402.a	ENSGT00390000016054.b.j.c.b	ENSGT00940000158412	ENSGT00390000010045.t	ENSGT00940000165224.a.a	ENSGT00530000063624.C.a	ENSGT00910000144179.b.b.o.b	ENSGT00940000159933	ENSGT00410000025596.a.b.b
Oryzias	ANCESTRAL SPECIES	23	ENSGT00390000007776	ENSGT01100000263484.B.b.b.a.a	ENSGT00530000063880.b.e	ENSGT00940000162855.a.a.a.b	ENSGT00940000162855.a.b	ENSGT00390000009358	ENSGT00400000024940	ENSGT00390000003774.b	ENSGT00390000003774.a.a.c	ENSGT00940000157616.j.a	ENSGT01000000214440.A.a.b.a.g.a	ENSGT00940000164559.A	ENSGT00940000164926	ENSGT00390000005125	ENSGT00390000014900.a	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00940000171014	ENSGT00910000144184 #24	ENSGT00940000165550.a.b.a.a	ENSGT00530000063402.a	ENSGT00390000016054.b.j.c.b	ENSGT00940000158412	ENSGT00940000165224.a.a	ENSGT00530000063624.C.a	ENSGT00910000144179.b.b.o.b	ENSGT00940000159933	ENSGT00410000025596.a.b.b	ENSGT00940000157151.d	ENSGT01030000234597.b.a.b	ENSGT00990000203811
Oryzias_b	ANCESTRAL SPECIES	27	ENSGT00390000007776	ENSGT01100000263484.B.b.b.a.a	ENSGT00530000063880.b.e	ENSGT00940000162855.a.a.a.b	ENSGT00940000162855.a.b	ENSGT00390000009358	ENSGT00400000024940	ENSGT00390000003774.b	ENSGT00390000003774.a.a.c	ENSGT00940000157616.j.a	ENSGT01000000214440.A.a.b.a.g.a	ENSGT00940000156969.rb.b	ENSGT00940000164926	ENSGT00390000005125	ENSGT00390000014900.a	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00940000171014	ENSGT00910000144184 #24	ENSGT00940000165550.a.b.a.a	ENSGT00530000063402.a	ENSGT00390000016054.b.j.c.b	ENSGT00940000158412	ENSGT00940000165224.a.a	ENSGT00530000063624.C.a	ENSGT00910000144179.b.b.o.b	ENSGT00940000159933	ENSGT00410000025596.a.b.b	ENSGT00940000157151.d	ENSGT01030000234597.b.a.b	ENSGT00990000203811
Javanese ricefish	MODERN SPECIES	2	ENSOJAG00000018883	gdf6b (ENSOJAG00000018879)	ENY2 (ENSOJAG00000017753)	nudcd1 (ENSOJAG00000017741)	trhrb (ENSOJAG00000017728)	ENSOJAG00000017543	ENSOJAG00000017527	slc52a2 (ENSOJAG00000017523)	ENSOJAG00000017515	nfatc1 (ENSOJAG00000017437)	STX12 (ENSOJAG00000017407)	ENSOJAG00000017370	ENSOJAG00000017363	ssr2 (ENSOJAG00000017347)	sostdc1b (ENSOJAG00000017339)	thrb (ENSOJAG00000016878) #22	nr1d2b (ENSOJAG00000016827) #23	ENSOJAG00000016817	rpl15 (ENSOJAG00000016794) #24	ENSOJAG00000016772	sf3a3 (ENSOJAG00000016696)	ENSOJAG00000016679	maneal (ENSOJAG00000016670)	pdik1l (ENSOJAG00000016661)	foxo6b (ENSOJAG00000016654)	cited4a (ENSOJAG00000016647)	ctps1a (ENSOJAG00000016461)	rab42a (ENSOJAG00000016438)	ENSOJAG00000016422	gmeb1 (ENSOJAG00000016345)	ENSOJAG00000016331
Indian medaka	DUPLICATION
Indian medaka	MODERN SPECIES	3	trhrb (ENSOMEG00000019080)	TMEM74 (ENSOMEG00000019095)	ENSOMEG00000019108	pleca (ENSOMEG00000019466)	ENSOMEG00000019527	ENSOMEG00000019554	ENSOMEG00000019565	slc52a2 (ENSOMEG00000019587)	ENSOMEG00000019604	nfatc1 (ENSOMEG00000019626)	STX12 (ENSOMEG00000019700)	ENSOMEG00000019751	ENSOMEG00000019832	ssr2 (ENSOMEG00000019881)	sostdc1b (ENSOMEG00000019905)	thrb (ENSOMEG00000019981) #22	nr1d2b (ENSOMEG00000020046) #23	rpl15 (ENSOMEG00000020068) #24	ENSOMEG00000020113	sf3a3 (ENSOMEG00000020177)	maneal (ENSOMEG00000020193)	pdik1l (ENSOMEG00000020205)	ENSOMEG00000020216	ENSOMEG00000020225	foxo6b (ENSOMEG00000020249)	cited4a (ENSOMEG00000020266)	ctps1a (ENSOMEG00000020366)	rab42a (ENSOMEG00000020418)	gmeb1 (ENSOMEG00000020473)	PTPRU (ENSOMEG00000020612)	ENSOMEG00000020655
Indian medaka	MODERN SPECIES	470																thrb (ENSOMEG00000009872) #22
Oryzias_a	ANCESTRAL SPECIES	18	ENSGT00390000007776	ENSGT01100000263484.B.b.b.a.a	ENSGT00530000063880.b.e	ENSGT00940000162855.a.a.a.b	ENSGT00940000154843.F.d	ENSGT00390000009358	ENSGT00400000024940	ENSGT00390000003774.b	ENSGT00390000003774.a.a.c	ENSGT00940000157616.j.a	ENSGT01000000214440.A.a.b.a.g.a	ENSGT00940000164559.A	ENSGT00940000164926	ENSGT00390000005125	ENSGT00390000014900.a	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00940000171014	ENSGT00910000144184 #24	ENSGT00530000063402.a	ENSGT00390000016054.b.j.c.b	ENSGT00940000158412	ENSGT00940000165224.a.a.e	ENSGT00530000063624.C.a	ENSGT00910000144179.b.b.o.b	ENSGT00940000159933	ENSGT00410000025596.a.b.b	ENSGT00940000157151.d	ENSGT01030000234597.b.a.b	ENSGT00990000203811	ENSGT01030000234623.a.a.b.b
Japanese Medaka HdrR	MODERN SPECIES	2	nudcd1 (ENSORLG00000007957)	trhrb (ENSORLG00000029082)	TMEM74 (ENSORLG00000007970)	pleca (ENSORLG00000007995)	ENSORLG00000008003	ENSORLG00000008009	ENSORLG00000026217	slc52a2 (ENSORLG00000008027)	ENSORLG00000008034	nfatc1 (ENSORLG00000008055)	STX12 (ENSORLG00000008076)	ENSORLG00000008080	ENSORLG00000008094	ssr2 (ENSORLG00000023087)	sostdc1b (ENSORLG00000008107)	thrb (ENSORLG00000008122) #22	nr1d2b (ENSORLG00000024060) #23	ENSORLG00000008130	ENSORLG00000024501	sf3a3 (ENSORLG00000008175)	ENSORLG00000028249	maneal (ENSORLG00000008194)	pdik1l (ENSORLG00000023873)	foxo6b (ENSORLG00000024735)	cited4a (ENSORLG00000008214)	ctps1a (ENSORLG00000008263)	rab42a (ENSORLG00000022335)	gmeb1 (ENSORLG00000008294)	PTPRU (ENSORLG00000008339)	ENSORLG00000021866	ENSORLG00000023017
Chinese medaka	MODERN SPECIES	136	ENY2 (ENSOSIG00000009461)	nudcd1 (ENSOSIG00000009206)	trhrb (ENSOSIG00000009198)	TMEM74 (ENSOSIG00000009196)	pleca (ENSOSIG00000007698)	ENSOSIG00000007672	ENSOSIG00000007669	ENSOSIG00000007666	slc52a2 (ENSOSIG00000007663)	nfatc1 (ENSOSIG00000007660)	STX12 (ENSOSIG00000007651)	ENSOSIG00000007644	ENSOSIG00000007635	ssr2 (ENSOSIG00000007629)	sostdc1b (ENSOSIG00000007625)	thrb (ENSOSIG00000007623) #22	nr1d2b (ENSOSIG00000007622) #23	ENSOSIG00000007620	rpl15 (ENSOSIG00000007616) #24	sf3a3 (ENSOSIG00000007604)	ENSOSIG00000007602	pdik1l (ENSOSIG00000007599)	maneal (ENSOSIG00000007597)	ENSOSIG00000007595
Cyprinodontiformes	ANCESTRAL SPECIES	10	ENSGT00940000163195.A.d	ENSGT01090000260131.c	ENSGT00940000164651.a.a	ENSGT00390000010029	ENSGT00390000002457	ENSGT00390000001994	ENSGT00390000008749.e	ENSGT00390000004417.a	ENSGT00390000009677	ENSGT00940000154222.d.b	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196.b #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184 #24	ENSGT00940000171014	ENSGT00940000159705 #25	ENSGT00940000165550.a.b.a.a	ENSGT00940000165550.a.a	ENSGT00530000063402.a	ENSGT00390000016054.b.j.c.b	ENSGT00940000158412	ENSGT00390000010045.t	ENSGT00940000165224.a.a	ENSGT00530000063624.C.a	ENSGT00910000144179.b.b.o.b	ENSGT00940000159933	ENSGT00410000025596.a.b.b
Aplocheiloidei	ANCESTRAL SPECIES	110						ENSGT00390000002457	ENSGT00390000001994	ENSGT00390000008749.e	ENSGT00390000009677	ENSGT00940000154222.d.b	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921.l #20	ENSGT00940000156196.b #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184 #24	ENSGT00940000171014	ENSGT00940000159705 #25	ENSGT00940000165550.a.b.b	ENSGT00940000165550.a.a	ENSGT00530000063402.a	ENSGT00390000016054.b.j.c.b	ENSGT00390000016054.b.j.c.a	ENSGT00940000158412	ENSGT00940000168634	ENSGT00940000165224.a.a	ENSGT00530000063624.C.a	ENSGT00910000144179.b.b.o.b	ENSGT00940000159933
Mangrove rivulus	MODERN SPECIES	468																thrb (ENSKMAG00000000596) #22	nr1d2b (ENSKMAG00000000638) #23	rpl15 (ENSKMAG00000000646) #24	ENSKMAG00000000670	nkiras1 (ENSKMAG00000000680) #25	ENSKMAG00000000711
Turquoise killifish	MODERN SPECIES	1618	S100V2 (ENSNFUG00015022491)	ENSNFUG00015022495	thsd7aa (ENSNFUG00015022545)	ENSNFUG00015023092	TAC1 (ENSNFUG00015023096)	ENSNFUG00015023107	ASNS (ENSNFUG00015023109)	ANLN (ENSNFUG00015009047)	eepd1 (ENSNFUG00015009087)	SEPTIN7 (ENSNFUG00015009291)	lrrc3b (ENSNFUG00015011314) #17	OXSM (ENSNFUG00015011318) #18	NGLY1 (ENSNFUG00015011333) #19	top2b (ENSNFUG00015011532) #20	RARB (ENSNFUG00015014142) #21	thrb (ENSNFUG00015014216) #22	ENSNFUG00015014435	ENSNFUG00015014442	NR1D2B (ENSNFUG00015014451) #23	RPL15 (ENSNFUG00015014462) #24	ENSNFUG00015014473	CT583712.1 (ENSNFUG00015014482)	ENSNFUG00015014487	SF3A3 (ENSNFUG00015014506)	STX12 (ENSNFUG00015014538)	ZNRD1 (ENSNFUG00015014647)	gtf2h4 (ENSNFUG00015014688)	OLA.15253 (ENSNFUG00015015094)	ssr2 (ENSNFUG00015015115)	sostdc1b (ENSNFUG00015015172)	PPP1R10 (ENSNFUG00015015181)
Cyprinodontoidei	ANCESTRAL SPECIES	11	ENSGT00940000163195.A.d	ENSGT01090000260131.c	ENSGT00940000164651.a.a	ENSGT00390000010029	ENSGT00390000002457	ENSGT00390000001994	ENSGT00390000008749.e	ENSGT00390000004417.a	ENSGT00390000009677	ENSGT00940000154222.d.b	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196.b #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184 #24	ENSGT00940000171014	ENSGT00940000159705 #25	ENSGT00940000165550.a.b.a.a	ENSGT00940000165550.a.a	ENSGT00530000063402.a	ENSGT00390000016054.b.j.c.b	ENSGT00940000158412	ENSGT00390000010045.t	ENSGT00940000165224.a.a	ENSGT00530000063624.C.a	ENSGT00910000144179.b.b.o.b	ENSGT00940000159933	ENSGT00410000025596.a.b.b
NAME_4	ANCESTRAL SPECIES	215					ENSGT00390000002457	ENSGT00390000001994	ENSGT00390000008749.e	ENSGT00390000004417.a	ENSGT00390000009677	ENSGT00940000154222.d.b	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196.b #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184 #24	ENSGT00940000159705 #25	ENSGT00940000165550.a.b.a.a	ENSGT00940000165550.a.a	ENSGT00530000063402.a	ENSGT00390000016054.b.j.c.b	ENSGT00940000158412	ENSGT00390000010045.t
Sheepshead minnow	MODERN SPECIES	2288																thrb (ENSCVAG00000009984) #22
Mummichog	MODERN SPECIES	2420					tac1 (ENSFHEG00000018649)	asns (ENSFHEG00000018690)	anln (ENSFHEG00000018723)	MATCAP2 (ENSFHEG00000018750)	eepd1 (ENSFHEG00000018794)	SEPTIN7 (ENSFHEG00000018855)	lrrc3b (ENSFHEG00000018872) #17	OXSM (ENSFHEG00000018881) #18	ngly1 (ENSFHEG00000018892) #19	top2b (ENSFHEG00000000488) #20	RARB (ENSFHEG00000018939) #21	thrb (ENSFHEG00000018944) #22	nr1d2b (ENSFHEG00000018952) #23	rpl15 (ENSFHEG00000018959) #24	nkiras1 (ENSFHEG00000018971) #25	ENSFHEG00000018981	ENSFHEG00000019027	ENSFHEG00000019046	sf3a3 (ENSFHEG00000019107)	maneal (ENSFHEG00000019115)	pdik1l (ENSFHEG00000019121)	ENSFHEG00000019127
Poeciliinae	ANCESTRAL SPECIES	18	ENSGT00940000163195.A.d	ENSGT01090000260131.c	ENSGT00940000164651.a.a	ENSGT00390000010029	ENSGT00390000002457	ENSGT00390000001994	ENSGT00390000008749.e	ENSGT00390000004417.a	ENSGT00390000009677	ENSGT00940000154222.d.b	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196.b #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184 #24	ENSGT00940000171014	ENSGT00940000159705 #25	ENSGT00940000165550.a.b.a.a	ENSGT00940000165550.a.a	ENSGT00530000063402.a	ENSGT00390000016054.b.j.c.b	ENSGT00940000158412	ENSGT00390000010045.t	ENSGT00940000165224.a.a	ENSGT00530000063624.C.a	ENSGT00910000144179.b.b.o.b	ENSGT00940000159933	ENSGT00410000025596.a.b.b
Platyfish	MODERN SPECIES	4	sdhaf3 (ENSXMAG00000016866)	tac1 (ENSXMAG00000016867)	asns (ENSXMAG00000016868)	anln (ENSXMAG00000007415)	ENSXMAG00000024331	MATCAP2 (ENSXMAG00000010593)	ENSXMAG00000024671	PPP1CA (ENSXMAG00000000637)	eepd1 (ENSXMAG00000016869)	SEPTIN7 (ENSXMAG00000027369)	lrrc3b (ENSXMAG00000019621) #17	OXSM (ENSXMAG00000016914) #18	ngly1 (ENSXMAG00000016915) #19	top2b (ENSXMAG00000016936) #20	RARB (ENSXMAG00000017035) #21	thrb (ENSXMAG00000017066) #22	nr1d2b (ENSXMAG00000017106) #23	rpl15 (ENSXMAG00000017136) #24	nkiras1 (ENSXMAG00000017139) #25	ENSXMAG00000028205	ENSXMAG00000017163	sf3a3 (ENSXMAG00000017165)	maneal (ENSXMAG00000017192)	pdik1l (ENSXMAG00000026218)	ENSXMAG00000024046	foxo6b (ENSXMAG00000025294)	cited4a (ENSXMAG00000012801)	ctps1a (ENSXMAG00000012809)	rab42a (ENSXMAG00000028376)	gmeb1 (ENSXMAG00000021199)	PTPRU (ENSXMAG00000012786)
Poecilia	ANCESTRAL SPECIES	41	ENSGT00390000008029	ENSGT00940000163195.A.d	ENSGT00940000164651.a.a	ENSGT00390000010029	ENSGT00390000002457	ENSGT00390000001994	ENSGT00390000008749.e	ENSGT00390000004417.a	ENSGT00390000009677	ENSGT00940000154222.d.b	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196.b #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184 #24	ENSGT00940000171014	ENSGT00940000159705 #25	ENSGT00940000165550.a.b.a.a	ENSGT00940000165550.a.a	ENSGT00530000063402.a	ENSGT00390000016054.b.j.c.b	ENSGT00940000158412	ENSGT00390000010045.t	ENSGT00940000165224.a.a	ENSGT00530000063624.C.a	ENSGT00910000144179.b.b.o.b	ENSGT00940000159933	ENSGT00410000025596.a.b.b
Guppy	MODERN SPECIES	441	rpa3 (ENSPREG00000012950)	ENSPREG00000012968	c1galt1a (ENSPREG00000013015)	sdhaf3 (ENSPREG00000013024)	tac1 (ENSPREG00000013035)	asns (ENSPREG00000013056)	anln (ENSPREG00000013106)	MATCAP2 (ENSPREG00000013184)	eepd1 (ENSPREG00000013213)	SEPTIN7 (ENSPREG00000013269)	lrrc3b (ENSPREG00000013348) #17	OXSM (ENSPREG00000013356) #18	ngly1 (ENSPREG00000013394) #19	top2b (ENSPREG00000013540) #20	RARB (ENSPREG00000013651) #21	thrb (ENSPREG00000013686) #22	nr1d2b (ENSPREG00000013704) #23	rpl15 (ENSPREG00000013725) #24	ENSPREG00000013738	nkiras1 (ENSPREG00000013742) #25	ENSPREG00000013756	ENSPREG00000013786	sf3a3 (ENSPREG00000013802)	maneal (ENSPREG00000013829)	pdik1l (ENSPREG00000013832)	foxo6b (ENSPREG00000013840)	cited4a (ENSPREG00000013848)	ctps1a (ENSPREG00000013885)	rab42a (ENSPREG00000013962)	gmeb1 (ENSPREG00000013985)	PTPRU (ENSPREG00000014043)
NAME_6	ANCESTRAL SPECIES	93	ENSGT00390000008029	ENSGT00940000163195.A.d	ENSGT00940000164651.a.a	ENSGT00390000010029	ENSGT00390000002457	ENSGT00390000001994	ENSGT00390000008749.e	ENSGT00390000004417.a	ENSGT00390000009677	ENSGT00940000154222.d.b	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196.b #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184 #24	ENSGT00940000159705 #25	ENSGT00940000165550.a.b.a.a	ENSGT00940000165550.a.a	ENSGT00530000063402.a	ENSGT00390000016054.b.j.c.b	ENSGT00940000158412	ENSGT00390000010045.t	ENSGT00940000165224.a.a	ENSGT00530000063624.C.a	ENSGT00910000144179.b.b.o.b	ENSGT00940000159933	ENSGT00410000025596.a.b.b	ENSGT00940000157151.d
Sailfin molly	MODERN SPECIES	1979															asns (ENSPLAG00000023791)	thrb (ENSPLAG00000001135) #22	nr1d2b (ENSPLAG00000001136) #23
Amazon molly	MODERN SPECIES	347	ENSPFOG00000008231	c1galt1a (ENSPFOG00000008186)	sdhaf3 (ENSPFOG00000008176)	ENSPFOG00000020215	tac1 (ENSPFOG00000008135)	asns (ENSPFOG00000008033)	anln (ENSPFOG00000007851)	MATCAP2 (ENSPFOG00000007761)	eepd1 (ENSPFOG00000007636)	SEPTIN7 (ENSPFOG00000007458)	lrrc3b (ENSPFOG00000020214) #17	OXSM (ENSPFOG00000007454) #18	ngly1 (ENSPFOG00000007204) #19	top2b (ENSPFOG00000006761) #20	RARB (ENSPFOG00000006547) #21	thrb (ENSPFOG00000006046) #22	nr1d2b (ENSPFOG00000005825) #23	ENSPFOG00000024820	rpl15 (ENSPFOG00000005794) #24	nkiras1 (ENSPFOG00000005763) #25	ENSPFOG00000024142	ENSPFOG00000005761	maneal (ENSPFOG00000005180)	sf3a3 (ENSPFOG00000005284)	maneal (ENSPFOG00000005150)	pdik1l (ENSPFOG00000005129)	ENSPFOG00000005121	foxo6b (ENSPFOG00000005111)	cited4a (ENSPFOG00000005101)	ctps1a (ENSPFOG00000004872)	rab42a (ENSPFOG00000004838)
Percomorphaceae_C	ANCESTRAL SPECIES	15	ENSGT00940000163195.A.d	ENSGT00940000165423.b	ENSGT00940000164651.a.a	ENSGT00390000010029	ENSGT00390000002457	ENSGT00390000001994	ENSGT00390000008749.e	ENSGT00390000004417.a	ENSGT00390000009677	ENSGT00940000154222.d.b	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196.b #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00940000171014	ENSGT00910000144184 #24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000165550.a.b.a.a	ENSGT00940000165550.a.a	ENSGT00530000063402.a	ENSGT00390000016054.b.j.b	ENSGT00940000153295.a.b	ENSGT00940000158412	ENSGT00390000010045.t	ENSGT00940000165224.a.a	ENSGT00410000025651.B	ENSGT00530000063624.C.a
Percomorphaceae_D	ANCESTRAL SPECIES	14	ENSGT00390000014273.b	ENSGT00940000164585.c.a.a.b	ENSGT00390000008274	ENSGT00390000002869	ENSGT00940000158522.m	ENSGT00390000004097.b	ENSGT01050000244841.A.a.a.b	ENSGT00940000164559.A	ENSGT00390000009677	ENSGT00940000154222.d.b	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196.b #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184 #24	ENSGT00940000171014	ENSGT00940000159705 #25	ENSGT00940000165550.a.b.a.a	ENSGT00940000165550.a.a	ENSGT00530000063402.a	ENSGT00390000016054.b.j.b	ENSGT00940000153295.a.b	ENSGT00940000158412	ENSGT00390000010045.t	ENSGT00940000165224.a.a	ENSGT00530000063624.C.a	ENSGT00910000144179.b.b.o.b	ENSGT00940000159933
Anabantaria	ANCESTRAL SPECIES	16	ENSGT00390000014273.b	ENSGT00940000164585.c.a.a.b	ENSGT00390000008274	ENSGT00390000002869	ENSGT00940000158522.m	ENSGT00390000004097.b	ENSGT01050000244841.A.a.a.b	ENSGT00940000164559.A	ENSGT00390000009677	ENSGT00940000154222.d.b	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196.b #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184 #24	ENSGT00940000171014	ENSGT00940000159705 #25	ENSGT00940000165550.a.b.a.a	ENSGT00940000165550.a.a	ENSGT00530000063402.a	ENSGT00390000016054.b.j.b	ENSGT00940000153295.a.b	ENSGT00940000158412	ENSGT00390000010045.t	ENSGT00940000168634	ENSGT00940000165224.a.a	ENSGT00530000063624.C.a	ENSGT00910000144179.b.b.o.b
Anabantoidei	ANCESTRAL SPECIES	19	ENSGT00390000014273.b	ENSGT00940000164585.c.a.a.b	ENSGT00390000008274	ENSGT00390000002869	ENSGT00940000158522.m	ENSGT00390000004097.b	ENSGT01050000244841.A.a.a.b	ENSGT00940000164559.A	ENSGT00390000009677	ENSGT00940000154222.d.b	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196.b #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184 #24	ENSGT00940000171014	ENSGT00940000159705 #25	ENSGT00940000165550.a.b.a.a	ENSGT00530000063402.a	ENSGT00390000016054.b.j.b	ENSGT00940000153295.a.b	ENSGT00940000158412	ENSGT00390000010045.t	ENSGT00940000168634	ENSGT00940000165224.a.a	ENSGT00530000063624.C.a	ENSGT00910000144179.b.b.o.b	ENSGT00940000159933
Climbing perch	MODERN SPECIES	2	nt5c1aa (ENSATEG00000007706)	ENSATEG00000007737	ENSATEG00000028119	ENSATEG00000007764	SLC66A2 (ENSATEG00000029593)	ENSATEG00000007793	ctdp1 (ENSATEG00000007811)	ENSATEG00000007837	ENSATEG00000007903	ENSATEG00000007955	LRRC3B (ENSATEG00000008032) #17	OXSM (ENSATEG00000008048) #18	NGLY1 (ENSATEG00000008075) #19	top2b (ENSATEG00000008292) #20	RARB (ENSATEG00000008563) #21	thrb (ENSATEG00000008622) #22	nr1d2b (ENSATEG00000008635) #23	rpl15 (ENSATEG00000008660) #24	ENSATEG00000008677	nkiras1 (ENSATEG00000029908) #25	ENSATEG00000008727	sf3a3 (ENSATEG00000008754)	maneal (ENSATEG00000008839)	lin28ab (ENSATEG00000008862)	pdik1l (ENSATEG00000026379)	ENSATEG00000030044	ENSATEG00000025848	foxo6b (ENSATEG00000008896)	cited4a (ENSATEG00000008922)	ctps1a (ENSATEG00000008963)	rab42a (ENSATEG00000028893)
Siamese fighting fish	MODERN SPECIES	2	chtopa (ENSBSLG00000011028)	txnipa (ENSBSLG00000011610)	gatad2b (ENSBSLG00000011683)	gnrhr1 (ENSBSLG00000011764)	ENSBSLG00000011785	eepd1 (ENSBSLG00000011860)	ENSBSLG00000011991	lrrc3b (ENSBSLG00000012762) #17	ENSBSLG00000012765	ENSBSLG00000012769	OXSM (ENSBSLG00000012774) #18	ngly1 (ENSBSLG00000012777) #19	top2b (ENSBSLG00000012827) #20	RARB (ENSBSLG00000012940) #21	ENSBSLG00000012966	thrb (ENSBSLG00000013248) #22	nr1d2b (ENSBSLG00000013585) #23	rpl15 (ENSBSLG00000013642) #24	ENSBSLG00000013650	nkiras1 (ENSBSLG00000013653) #25	ENSBSLG00000014102	sf3a3 (ENSBSLG00000014314)	maneal (ENSBSLG00000014599)	lin28ab (ENSBSLG00000014603)	pdik1l (ENSBSLG00000014608)	ENSBSLG00000014610	foxo6b (ENSBSLG00000014651)	cited4a (ENSBSLG00000014670)	ctps1a (ENSBSLG00000014710)	rab42a (ENSBSLG00000014909)	gmeb1 (ENSBSLG00000014919)
Zig-zag eel	MODERN SPECIES	2	asns (ENSMAMG00000000803)	ENSMAMG00000000903	ENSMAMG00000000942	ENSMAMG00000000968	ccn2b (ENSMAMG00000001032)	ENSMAMG00000001050	ENSMAMG00000001096	ENSMAMG00000001247	ENSMAMG00000001294	ENSMAMG00000001348	LRRC3B (ENSMAMG00000001401) #17	OXSM (ENSMAMG00000001412) #18	NGLY1 (ENSMAMG00000001434) #19	ENSMAMG00000001653	RARB (ENSMAMG00000001788) #21	thrb (ENSMAMG00000001838) #22	nr1d2b (ENSMAMG00000001859) #23	rpl15 (ENSMAMG00000001866) #24	ENSMAMG00000001875	nkiras1 (ENSMAMG00000028019) #25	ENSMAMG00000001921	sf3a3 (ENSMAMG00000001942)	maneal (ENSMAMG00000002013)	lin28ab (ENSMAMG00000002030)	pdik1l (ENSMAMG00000026324)	ENSMAMG00000002054	foxo6b (ENSMAMG00000002099)	cited4a (ENSMAMG00000024844)	ctps1a (ENSMAMG00000002143)	rab42a (ENSMAMG00000002296)	gmeb1 (ENSMAMG00000002311)
Carangaria	ANCESTRAL SPECIES	14	ENSGT00390000014273.b	ENSGT00940000164585.c.a.a.b	ENSGT00390000008274	ENSGT00390000002869	ENSGT00940000158522.m	ENSGT00390000004097.b	ENSGT01050000244841.A.a.a.b	ENSGT00940000164559.A	ENSGT00390000009677	ENSGT00940000154222.d.b	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196.b #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184 #24	ENSGT00940000171014	ENSGT00940000159705 #25	ENSGT00940000165550.a.b.a.a	ENSGT00940000165550.a.a	ENSGT00530000063402.a	ENSGT00390000016054.b.j.b	ENSGT00940000153295.a.b	ENSGT00940000158412	ENSGT00940000168634	ENSGT00940000165224.a.a	ENSGT00530000063624.C.a	ENSGT00910000144179.b.b.o.b	ENSGT00940000159933
Pleuronectoidei	ANCESTRAL SPECIES	15	ENSGT00950000183046.b.b	ENSGT00940000156923	ENSGT00940000176083	ENSGT00950000182883.a.b.a	ENSGT00940000155427.b	ENSGT00940000159083	ENSGT00940000154546.b	ENSGT00940000154018.b.a	ENSGT00390000009677	ENSGT00940000154222.d.b	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196.b #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184 #24	ENSGT00940000171014	ENSGT00940000159705 #25	ENSGT00940000165550.a.a	ENSGT00530000063402.a	ENSGT00390000016054.b.j.b	ENSGT00940000153295.a.b	ENSGT00940000158412	ENSGT00390000010045.t	ENSGT00940000165224.a.a	ENSGT00530000063624.C.a	ENSGT00910000144179.b.b.o.b	ENSGT00940000159933	ENSGT00410000025596.a.b.b
Turbot	MODERN SPECIES	19	fam151a (ENSSMAG00000019934)	ACOT11 (ENSSMAG00000019939)	mrpl37 (ENSSMAG00000019958)	ENSSMAG00000019974	ENSSMAG00000020004	ENSSMAG00000020011	ENSSMAG00000020045	ENSSMAG00000026795	ENSSMAG00000020064	ENSSMAG00000020081	penka (ENSSMAG00000020089)	ENSSMAG00000020106	ENSSMAG00000020108	top2b (ENSSMAG00000020111) #20	RARB (ENSSMAG00000020130) #21	thrb (ENSSMAG00000020135) #22	ENSSMAG00000031430	nr1d2b (ENSSMAG00000020162) #23	rpl15 (ENSSMAG00000020194) #24	ENSSMAG00000020196	nkiras1 (ENSSMAG00000030183) #25	ENSSMAG00000020204	sf3a3 (ENSSMAG00000020213)	maneal (ENSSMAG00000020237)	lin28ab (ENSSMAG00000030655)	pdik1l (ENSSMAG00000035265)	ENSSMAG00000020249	foxo6b (ENSSMAG00000020253)	cited4a (ENSSMAG00000020255)	ctps1a (ENSSMAG00000020259)	rab42a (ENSSMAG00000020311)
Tongue sole	MODERN SPECIES	9	slc6a19a.1 (ENSCSEG00000010001)	ENSCSEG00000010030	gstr (ENSCSEG00000010061)	heyl (ENSCSEG00000010084)	zbtb8b (ENSCSEG00000010098)	ENSCSEG00000010117	eepd1 (ENSCSEG00000010167)	ENSCSEG00000010188	arl4ab (ENSCSEG00000010194)	tmem106bb (ENSCSEG00000010209)	thsd7aa (ENSCSEG00000010215)	nxph1 (ENSCSEG00000010246)	ENSCSEG00000010254	ENSCSEG00000010284	RARB (ENSCSEG00000010288) #21	thrb (ENSCSEG00000010308) #22	nr1d2b (ENSCSEG00000010352) #23	rpl15 (ENSCSEG00000010378) #24	ENSCSEG00000010385	nkiras1 (ENSCSEG00000010391) #25	sf3a3 (ENSCSEG00000010401)	ENSCSEG00000010440	ENSCSEG00000010442	maneal (ENSCSEG00000010445)	pdik1l (ENSCSEG00000010451)	stmn1a (ENSCSEG00000010460)	KLHL10 (ENSCSEG00000010469)	ENSCSEG00000010493	nudc (ENSCSEG00000010546)	gmeb1 (ENSCSEG00000010564)	rab42a (ENSCSEG00000010582)
Carangaria_A	ANCESTRAL SPECIES	30	ENSGT00390000014273.b	ENSGT00940000164585.c.a.a.b	ENSGT00390000008274	ENSGT00390000002869	ENSGT00940000158522.m	ENSGT00390000004097.b	ENSGT01050000244841.A.a.a.b	ENSGT00940000164559.A	ENSGT00390000009677	ENSGT00940000154222.d.b	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196.b #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184 #24	ENSGT00940000171014	ENSGT00940000159705 #25	ENSGT00940000165550.a.b.a.a	ENSGT00940000165550.a.a	ENSGT00530000063402.a	ENSGT00390000016054.b.j.b	ENSGT00940000153295.a.b	ENSGT00940000158412	ENSGT00940000168634	ENSGT00940000165224.a.a	ENSGT00530000063624.C.a	ENSGT00910000144179.b.b.o.b	ENSGT00940000159933
Barramundi perch	MODERN SPECIES	125																thrb (ENSLCAG00010002996) #22	nr1d2b (ENSLCAG00010003038) #23	nkiras1 (ENSLCAG00010003041) #25	rpl15 (ENSLCAG00010003046) #24	sf3a3 (ENSLCAG00010003059)	maneal (ENSLCAG00010003240)	lin28ab (ENSLCAG00010003253)	pdik1l (ENSLCAG00010003272)	ENSLCAG00010003276	ENSLCAG00010003281	foxo6b (ENSLCAG00010003285)	cited4a (ENSLCAG00010003287)	ctps1a (ENSLCAG00010003305)	rab42a (ENSLCAG00010003359)	gmeb1 (ENSLCAG00010003362)	PTPRU (ENSLCAG00010003612)
Seriola	ANCESTRAL SPECIES	42	ENSGT00390000014273.b	ENSGT00940000164585.c.a.a.b	ENSGT00390000008274	ENSGT00390000002869	ENSGT00940000158522.m	ENSGT00390000004097.b	ENSGT01050000244841.A.a.a.b	ENSGT00940000154546.b	ENSGT00390000009677	ENSGT00940000154222.d.b	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196.b #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00940000171014	ENSGT00910000144184 #24	ENSGT00940000159705 #25	ENSGT00940000165550.a.b.a.a	ENSGT00940000165550.a.a	ENSGT00530000063402.a	ENSGT00390000016054.b.j.b	ENSGT00940000153295.a.b	ENSGT00940000158412	ENSGT00940000168634	ENSGT00940000165224.a.a	ENSGT00530000063624.C.a	ENSGT00910000144179.b.b.o.b	ENSGT00940000159933
Yellowtail amberjack	MODERN SPECIES	2909															RARB (ENSSLDG00000020820) #21	thrb (ENSSLDG00000020776) #22	nr1d2b (ENSSLDG00000020760) #23	ENSSLDG00000020753	rpl15 (ENSSLDG00000020742) #24	nkiras1 (ENSSLDG00000020730) #25	ENSSLDG00000020718	ENSSLDG00000020698	sf3a3 (ENSSLDG00000020635)	maneal (ENSSLDG00000020622)	lin28ab (ENSSLDG00000020568)	pdik1l (ENSSLDG00000020550)	ENSSLDG00000020520	foxo6b (ENSSLDG00000020506)	cited4a (ENSSLDG00000020483)	ctps1a (ENSSLDG00000020378)	rab42a (ENSSLDG00000020354)
Greater amberjack	MODERN SPECIES	94	chtopa (ENSSDUG00000009983)	txnipa (ENSSDUG00000010049)	gatad2b (ENSSDUG00000010074)	gnrhr1 (ENSSDUG00000010202)	ENSSDUG00000011110	arl4ab (ENSSDUG00000011151)	eepd1 (ENSSDUG00000011179)	septin7a (ENSSDUG00000011216)	lrrc3b (ENSSDUG00000011308) #17	OXSM (ENSSDUG00000011323) #18	ngly1 (ENSSDUG00000011333) #19	ENSSDUG00000011354 #20	ENSSDUG00000011371 #20	RARB (ENSSDUG00000011391) #21	ENSSDUG00000011436	thrb (ENSSDUG00000011459) #22	nr1d2b (ENSSDUG00000011509) #23	rpl15 (ENSSDUG00000011517) #24	ENSSDUG00000011528	nkiras1 (ENSSDUG00000011555) #25	ENSSDUG00000011567	ENSSDUG00000011574	sf3a3 (ENSSDUG00000011590)	maneal (ENSSDUG00000011621)	lin28ab (ENSSDUG00000011644)	pdik1l (ENSSDUG00000011659)	ENSSDUG00000011681	foxo6b (ENSSDUG00000011696)	cited4a (ENSSDUG00000011707)	ctps1a (ENSSDUG00000011733)	rab42a (ENSSDUG00000011851)
Eupercaria	ANCESTRAL SPECIES	11	ENSGT00940000163195.A.d	ENSGT00940000165423.b	ENSGT00940000164651.a.a	ENSGT00390000010029	ENSGT00390000002457	ENSGT00390000001994	ENSGT00390000008749.e	ENSGT00390000004417.a	ENSGT00390000009677	ENSGT00940000154222.d.b	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196.b #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00940000171014	ENSGT00910000144184 #24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000165550.a.a	ENSGT00530000063402.a	ENSGT00390000016054.b.j.b	ENSGT00940000153295.a.b	ENSGT00940000158412	ENSGT00390000010045.t	ENSGT00940000168634	ENSGT00940000165224.a.a	ENSGT00410000025651.B	ENSGT00530000063624.C.a
Tetraodontidae	ANCESTRAL SPECIES	116																ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00940000171014	ENSGT00910000144184 #24	ENSGT00940000159705 #25	ENSGT00530000063402.a	ENSGT00390000016054.b.j.a.b	ENSGT00390000016054.b.j.a.a	ENSGT00940000153295.a.b	ENSGT00940000158412	ENSGT00940000168634	ENSGT00940000165224.a.a	ENSGT00530000063624.C.a	ENSGT00910000144179.b.b.o.b	ENSGT00940000159933
Fugu	MODERN SPECIES	3	cacng7a (ENSTRUG00000006755)	ENSTRUG00000006912	dbpa (ENSTRUG00000021412)	ENSTRUG00000026787	ENSTRUG00000007219	cnot3b (ENSTRUG00000007248)	ccdc106b (ENSTRUG00000007450)	tmem238a (ENSTRUG00000024238)	rcvrn3 (ENSTRUG00000007517)	si:ch211-232m10.6 (ENSTRUG00000020013)	epn1b (ENSTRUG00000023462)	necap1 (ENSTRUG00000007694)	ENSTRUG00000024748	ENSTRUG00000007988	ENSTRUG00000022584	thrb (ENSTRUG00000027849) #22	nr1d2b (ENSTRUG00000008460) #23	ENSTRUG00000008884	rpl15 (ENSTRUG00000021014) #24	nkiras1 (ENSTRUG00000008939) #25	ENSTRUG00000031280	ube2e1 (ENSTRUG00000028436)	sf3a3 (ENSTRUG00000009089)	maneal (ENSTRUG00000009359)	lin28ab (ENSTRUG00000009454)	pdik1l (ENSTRUG00000019478)	ENSTRUG00000009558	foxo6b (ENSTRUG00000009753)	cited4a (ENSTRUG00000009823)	ctps1a (ENSTRUG00000009834)	rab42a (ENSTRUG00000010224)
Tetraodon	DUPLICATION
Tetraodon	MODERN SPECIES	26	ENSTNIG00000002047	ENSTNIG00000002048	ENSTNIG00000002049	ENSTNIG00000002052	ENSTNIG00000002053	ENSTNIG00000002055	ptbp1a (ENSTNIG00000002060)	chchd2 (ENSTNIG00000002061)	ENSTNIG00000002062	FAM163B (ENSTNIG00000000629)	srd5a1 (ENSTNIG00000002063)	ENSTNIG00000002065	paqr3a (ENSTNIG00000002066)	ENSTNIG00000002067	ENSTNIG00000002068	ENSTNIG00000000257 #22	ENSTNIG00000002069	ENSTNIG00000002070	ENSTNIG00000002071	TOB2 (ENSTNIG00000002073)	ENSTNIG00000019753	ENSTNIG00000002075	panx1a (ENSTNIG00000002076)	gmppb (ENSTNIG00000002077)	ENSTNIG00000002078	ENSTNIG00000002079	crlf3 (ENSTNIG00000011283)	ENSTNIG00000002080	ENSTNIG00000002081	ENSTNIG00000002082	ENSTNIG00000002083
Tetraodon	MODERN SPECIES	26	ENSTNIG00000008776	ENSTNIG00000008777	SLC12A7 (ENSTNIG00000008778)	ENSTNIG00000008779	aoc1 (ENSTNIG00000008780)	ENSTNIG00000000071	ENSTNIG00000008781	ENSTNIG00000000924	KCNH2 (ENSTNIG00000008782)	ENSTNIG00000008862	vegfab (ENSTNIG00000009142)	angel2 (ENSTNIG00000006802)	ENSTNIG00000000646	RHCG (ENSTNIG00000009738)	ENSTNIG00000001814	thrb (ENSTNIG00000009795) #22	nr1d2b (ENSTNIG00000009796) #23	rpl15 (ENSTNIG00000009797) #24	nkiras1 (ENSTNIG00000009798) #25	ENSTNIG00000009799	ENSTNIG00000019752	sf3a3 (ENSTNIG00000009800)	ENSTNIG00000001016	ENSTNIG00000005106	ENSTNIG00000001085	ENSTNIG00000000474	maneal (ENSTNIG00000009801)	lin28ab (ENSTNIG00000009802)	pdik1l (ENSTNIG00000009803)	ENSTNIG00000000675	foxo6b (ENSTNIG00000009804)
Eupecaria_A	ANCESTRAL SPECIES	12	ENSGT00390000008029	ENSGT00940000165423.b	ENSGT00940000164651.a.a	ENSGT00390000010029	ENSGT00390000002457	ENSGT00390000001994	ENSGT00390000008749.e	ENSGT00390000004417.a	ENSGT00390000009677	ENSGT00940000154222.d.b	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196.b #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00940000171014	ENSGT00910000144184 #24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000165550.a.a	ENSGT00530000063402.a	ENSGT00390000016054.b.j.b	ENSGT00940000153295.a.b	ENSGT00940000158412	ENSGT00390000010045.t	ENSGT00940000168634	ENSGT00940000165224.a.a	ENSGT00410000025651.B	ENSGT00530000063624.C.a
Ballan wrasse	MODERN SPECIES	118	umad1 (ENSLBEG00000027882)	rpa3 (ENSLBEG00000027873)	col28a1a (ENSLBEG00000027853)	sdhaf3 (ENSLBEG00000027839)	tac1 (ENSLBEG00000027832)	asns (ENSLBEG00000027821)	anln (ENSLBEG00000027790)	MATCAP2 (ENSLBEG00000027770)	eepd1 (ENSLBEG00000027748)	septin7a (ENSLBEG00000027709)	lrrc3b (ENSLBEG00000027683) #17	OXSM (ENSLBEG00000027677) #18	ngly1 (ENSLBEG00000027645) #19	top2b (ENSLBEG00000027522) #20	RARB (ENSLBEG00000027453) #21	thrb (ENSLBEG00000027437) #22	nr1d2b (ENSLBEG00000027415) #23	ENSLBEG00000027408	rpl15 (ENSLBEG00000027399) #24	nkiras1 (ENSLBEG00000027387) #25	ENSLBEG00000027368
Eupecaria_B	ANCESTRAL SPECIES	12	ENSGT00940000163195.A.d	ENSGT00940000165423.b	ENSGT00940000164651.a.a	ENSGT00390000010029	ENSGT00390000002457	ENSGT00390000001994	ENSGT00390000008749.e	ENSGT00390000004417.a	ENSGT00390000009677	ENSGT00940000154222.d.b	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196.b #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00940000171014	ENSGT00910000144184 #24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000165550.a.a	ENSGT00530000063402.a	ENSGT00390000016054.b.j.b	ENSGT00940000153295.a.b	ENSGT00940000158412	ENSGT00390000010045.t	ENSGT00940000168634	ENSGT00940000165224.a.a	ENSGT00410000025651.B	ENSGT00530000063624.C.a
Eupecaria_C	ANCESTRAL SPECIES	13	ENSGT00940000163195.A.d	ENSGT00940000165423.b	ENSGT00940000164651.a.a	ENSGT00390000010029	ENSGT00390000002457	ENSGT00390000001994	ENSGT00390000008749.e	ENSGT00390000004417.a	ENSGT00390000009677	ENSGT00940000154222.d.b	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196.b #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00940000171014	ENSGT00910000144184 #24	ENSGT00940000159705 #25	ENSGT00940000165550.a.a	ENSGT00530000063402.a	ENSGT00390000016054.b.j.b	ENSGT00940000153295.a.b	ENSGT00940000158412	ENSGT00390000010045.t	ENSGT00940000168634	ENSGT00940000165224.a.a	ENSGT00530000063624.C.a	ENSGT00910000144179.b.b.o.b	ENSGT00940000159933
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	10	ENSGT00390000008029	ENSGT00940000165423.b	ENSGT00940000164651.a.a	ENSGT00390000010029	ENSGT00390000002457	ENSGT00390000001994	ENSGT00390000008749.e	ENSGT00390000004417.a	ENSGT00390000009677	ENSGT00940000154222.d.b	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196.b #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00940000171014	ENSGT00910000144184 #24	ENSGT00940000159705 #25	ENSGT00940000165550.a.a	ENSGT00530000063402.a	ENSGT00390000016054.b.j.b	ENSGT00940000153295.a.b	ENSGT00940000158412	ENSGT00390000010045.t	ENSGT00940000168634	ENSGT00940000165224.a.a	ENSGT00530000063624.C.a	ENSGT00910000144179.b.b.o.b	ENSGT00940000159933
European seabass	MODERN SPECIES	22	ENSDLAG00005008549	ENSDLAG00005028865	ENSDLAG00005008635	ENSDLAG00005032298	ENSDLAG00005008661	ENSDLAG00005031311	ANLN (ENSDLAG00005008691)	MATCAP2 (ENSDLAG00005008757)	EEPD1 (ENSDLAG00005008747)	SEPTIN7 (ENSDLAG00005008897)	LRRC3B (ENSDLAG00005031652) #17	OXSM (ENSDLAG00005010398) #18	NGLY1 (ENSDLAG00005010410) #19	top2b (ENSDLAG00005010532) #20	RARB (ENSDLAG00005033103) #21	thrb (ENSDLAG00005012096) #22	nr1d2b (ENSDLAG00005012807) #23	nkiras1 (ENSDLAG00005031573) #25	rpl15 (ENSDLAG00005012824) #24	ENSDLAG00005034306	sf3a3 (ENSDLAG00005012900)	ENSDLAG00005012926	ENSDLAG00005027972	lin28ab (ENSDLAG00005032796)	pdik1l (ENSDLAG00005033422)	ENSDLAG00005030761	foxo6b (ENSDLAG00005033330)	cited4a (ENSDLAG00005029388)	ctps1a (ENSDLAG00005013019)	gmeb1 (ENSDLAG00005013289)	ENSDLAG00005013322
Large yellow croaker	MODERN SPECIES	484	umad1 (ENSLCRG00005012026)	ENSLCRG00005012022	c1galt1a (ENSLCRG00005012019)	sdhaf3 (ENSLCRG00005012018)	tac1 (ENSLCRG00005012017)	asns (ENSLCRG00005012014)	anln (ENSLCRG00005012006)	MATCAP2 (ENSLCRG00005012005)	eepd1 (ENSLCRG00005012004)	septin7a (ENSLCRG00005011154)	lrrc3b (ENSLCRG00005011148) #17	OXSM (ENSLCRG00005011146) #18	ngly1 (ENSLCRG00005011142) #19	top2b (ENSLCRG00005008914) #20	RARB (ENSLCRG00005008680) #21	thrb (ENSLCRG00005007879) #22	ENSLCRG00005007863 ##23	nr1d2b (ENSLCRG00005007862) #23	ENSLCRG00005007861	rpl15 (ENSLCRG00005007858) #24	nkiras1 (ENSLCRG00005007852) #25	ENSLCRG00005007822	sf3a3 (ENSLCRG00005007809)	maneal (ENSLCRG00005007808)	lin28ab (ENSLCRG00005007807)	pdik1l (ENSLCRG00005007804)	ENSLCRG00005007801	foxo6b (ENSLCRG00005007798)	cited4a (ENSLCRG00005007796)	ctps1a (ENSLCRG00005007243)	rab42a (ENSLCRG00005007222)
Gilthead seabream	MODERN SPECIES	17	snapin (ENSSAUG00010015418)	chtopa (ENSSAUG00010015416)	txnipa (ENSSAUG00010015411)	gatad2b (ENSSAUG00010015408)	gnrhr1 (ENSSAUG00010015400)	ENSSAUG00010015397	OXSM (ENSSAUG00010015395) #18	ngly1 (ENSSAUG00010015344) #19	ENSSAUG00010015342	top2b (ENSSAUG00010014943) #20	ENSSAUG00010014936	ENSSAUG00010014935	RARB (ENSSAUG00010014933) #21	ENSSAUG00010014931	ENSSAUG00010014930	thrb (ENSSAUG00010013839) #22	nr1d2b (ENSSAUG00010013815) #23	ENSSAUG00010013813	rpl15 (ENSSAUG00010013812) #24	nkiras1 (ENSSAUG00010013811) #25	ENSSAUG00010013810	sf3a3 (ENSSAUG00010013808)	maneal (ENSSAUG00010013806)	ENSSAUG00010013805	lin28ab (ENSSAUG00010013804)	pdik1l (ENSSAUG00010013803)	ENSSAUG00010013802	foxo6b (ENSSAUG00010013801)	cited4a (ENSSAUG00010013800)	ENSSAUG00010013795	ctps1a (ENSSAUG00010013724)
Perciformes	ANCESTRAL SPECIES	11	ENSGT00390000016820.c	ENSGT00390000014900.a	ENSGT00390000005125	ENSGT00940000164926	ENSGT01030000234542.b.a.a.a.a	ENSGT00400000025005	ENSGT00940000154870.A.b	ENSGT00940000176166	ENSGT00730000111394	ENSGT00940000158341.a	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196.b #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00940000171014	ENSGT00910000144184 #24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000165550.a.a	ENSGT00530000063402.a	ENSGT00390000016054.b.j.b	ENSGT00940000153295.a.b	ENSGT00940000158412	ENSGT00390000010045.t	ENSGT00940000168634	ENSGT00940000165224.a.a	ENSGT00410000025651.B	ENSGT00530000063624.C.a
Perciformes_a	ANCESTRAL SPECIES	14	ENSGT00390000008029	ENSGT00940000165423.b	ENSGT00940000164651.a.a	ENSGT00390000010029	ENSGT00390000002457	ENSGT00390000001994	ENSGT00390000008749.e	ENSGT00390000004417.a	ENSGT00390000009677	ENSGT00940000154222.d.b	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196.b #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00940000171014	ENSGT00910000144184 #24	ENSGT00940000159705 #25	ENSGT00940000156415 #26	ENSGT00940000165550.a.a	ENSGT00530000063402.a	ENSGT00390000016054.b.j.b	ENSGT00940000153295.a.b	ENSGT00940000158412	ENSGT00390000010045.t	ENSGT00940000168634	ENSGT00940000165224.a.a	ENSGT00410000025651.B	ENSGT00530000063624.C.a
Pike perch	MODERN SPECIES	5	gtf2h4 (ENSSLUG00000011425)	ENSSLUG00000011405	GABBR1 (ENSSLUG00000011120)	ENSSLUG00000011096	ENSSLUG00000011088	ENSSLUG00000011083	ENSSLUG00000011080	ENSSLUG00000011078	lrrc3b (ENSSLUG00000011077) #17	ENSSLUG00000011074	OXSM (ENSSLUG00000011071) #18	ngly1 (ENSSLUG00000011067) #19	top2b (ENSSLUG00000003499) #20	RARB (ENSSLUG00000002791) #21	ENSSLUG00000002787	thrb (ENSSLUG00000002594) #22	ENSSLUG00000002557	nr1d2b (ENSSLUG00000002539) #23	rpl15 (ENSSLUG00000002528) #24	nkiras1 (ENSSLUG00000002522) #25	ENSSLUG00000002495	sf3a3 (ENSSLUG00000002430)	maneal (ENSSLUG00000002407)	lin28ab (ENSSLUG00000002395)	pdik1l (ENSSLUG00000002391)	ENSSLUG00000002384	foxo6b (ENSSLUG00000002373)	ENSSLUG00000002366	cited4a (ENSSLUG00000002364)	SEPTIN7 (ENSSLUG00000002207)	eepd1 (ENSSLUG00000002162)
Channel bull blenny	MODERN SPECIES	2	ENSCGOG00000010631	ENSCGOG00000010629	tac1 (ENSCGOG00000010617)	asns (ENSCGOG00000010205)	anln (ENSCGOG00000010191)	MATCAP2 (ENSCGOG00000010189)	eepd1 (ENSCGOG00000010185)	ENSCGOG00000010184	septin7a (ENSCGOG00000007076)	lrrc3b (ENSCGOG00000006994) #17	OXSM (ENSCGOG00000006991) #18	ngly1 (ENSCGOG00000006971) #19	top2b (ENSCGOG00000005667) #20	RARB (ENSCGOG00000005596) #21	ENSCGOG00000005594	thrb (ENSCGOG00000005560) #22	nr1d2b (ENSCGOG00000005547) #23	ENSCGOG00000005543	rpl15 (ENSCGOG00000005498) #24	nkiras1 (ENSCGOG00000005493) #25	UBE2E1 (ENSCGOG00000005460) #26	ENSCGOG00000005386	sf3a3 (ENSCGOG00000004863)	maneal (ENSCGOG00000004838)	ENSCGOG00000004833	ENSCGOG00000004826	foxo6b (ENSCGOG00000004780)	cited4a (ENSCGOG00000004773)	gmeb1 (ENSCGOG00000004755)	ENSCGOG00000004754	ctps1a (ENSCGOG00000003573)
Cottioidei	ANCESTRAL SPECIES	16				ENSGT00940000166598	ENSGT00390000007371.e	ENSGT00940000154868.a.b.a	ENSGT00390000008749.e	ENSGT00390000004417.a	ENSGT00390000009677	ENSGT00940000154222.d.b	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196.b #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184 #24	ENSGT00940000159705 #25	ENSGT00940000165550.a.a	ENSGT00530000063402.a	ENSGT00390000016054.b.j.b	ENSGT00940000153295.a.b	ENSGT00940000158412	ENSGT00940000165224.a.a	ENSGT00530000063624.C.a	ENSGT00910000144179.b.b.o.b	ENSGT00940000159933	ENSGT00410000025596.a.b.b	ENSGT00940000157151.d	ENSGT01030000234597.b.a.b
Lumpfish	MODERN SPECIES	2	grb10a (ENSCLMG00005018517)	ENSCLMG00005018514	ENSCLMG00005018513	paqr7a (ENSCLMG00005018512)	TMEM222 (ENSCLMG00005018511)	tpbga (ENSCLMG00005018510)	anln (ENSCLMG00005018509)	MATCAP2 (ENSCLMG00005018508)	eepd1 (ENSCLMG00005018506)	septin7a (ENSCLMG00005017528)	lrrc3b (ENSCLMG00005017523) #17	OXSM (ENSCLMG00005017522) #18	ngly1 (ENSCLMG00005017520) #19	top2b (ENSCLMG00005009292) #20	RARB (ENSCLMG00005009248) #21	thrb (ENSCLMG00005008927) #22	nr1d2b (ENSCLMG00005008919) #23	rpl15 (ENSCLMG00005008917) #24	nkiras1 (ENSCLMG00005008915) #25	ENSCLMG00005008913	sf3a3 (ENSCLMG00005008911)	ENSCLMG00005008910	lin28ab (ENSCLMG00005008876)	pdik1l (ENSCLMG00005008875)	foxo6b (ENSCLMG00005008817)	cited4a (ENSCLMG00005008814)	ctps1a (ENSCLMG00005008441)	rab42a (ENSCLMG00005008423)	gmeb1 (ENSCLMG00005008419)	ENSCLMG00005008418	PTPRU (ENSCLMG00005008103)
Stickleback	MODERN SPECIES	9	paqr7a (ENSGACG00000008162)	TMEM222 (ENSGACG00000008144)	tpbga (ENSGACG00000008136)	ENSGACG00000008131	ENSGACG00000008126	ENSGACG00000008125	anln (ENSGACG00000008118)	MATCAP2 (ENSGACG00000008109)	eepd1 (ENSGACG00000008092)	SEPTIN7 (ENSGACG00000008060)	lrrc3b (ENSGACG00000008056) #17	OXSM (ENSGACG00000008045) #18	ngly1 (ENSGACG00000008024) #19	top2b (ENSGACG00000008006) #20	RARB (ENSGACG00000007999) #21	thrb (ENSGACG00000007996) #22	nr1d2b (ENSGACG00000007986) #23	rpl15 (ENSGACG00000007961) #24	nkiras1 (ENSGACG00000007951) #25	ENSGACG00000007938	sf3a3 (ENSGACG00000007842)	maneal (ENSGACG00000007831)	lin28ab (ENSGACG00000007826)	pdik1l (ENSGACG00000007824)	foxo6b (ENSGACG00000007819)	cited4a (ENSGACG00000007815)	ctps1a (ENSGACG00000007801)	rab42a (ENSGACG00000007800)	gmeb1 (ENSGACG00000007791)	PTPRU (ENSGACG00000007773)	stmn1a (ENSGACG00000007747)
Cod	MODERN SPECIES	14	ENSGMOG00000022284	c1galt1a (ENSGMOG00000014905)	sdhaf3 (ENSGMOG00000031066)	tac1 (ENSGMOG00000005430)	asns (ENSGMOG00000005439)	ANLN (ENSGMOG00000009030)	MATCAP2 (ENSGMOG00000023946)	EEPD1 (ENSGMOG00000009006)	SEPTIN7 (ENSGMOG00000008992)	LRRC3B (ENSGMOG00000019872) #17	OXSM (ENSGMOG00000009912) #18	NGLY1 (ENSGMOG00000009893) #19	top2b (ENSGMOG00000009851) #20	RARB (ENSGMOG00000030906) #21	ENSGMOG00000024493	THRB (ENSGMOG00000008051) #22	nr1d2b (ENSGMOG00000011511) #23	ENSGMOG00000024193	hdac1 (ENSGMOG00000003276)	ENSGMOG00000003299	txlna (ENSGMOG00000025748)	KPNA6 (ENSGMOG00000003342)	ENSGMOG00000032327	ENSGMOG00000034087	ENSGMOG00000028927	khdrbs1b (ENSGMOG00000024537)	ENSGMOG00000003810	ENSGMOG00000032412	ENSGMOG00000009373	ENSGMOG00000001732	ENSGMOG00000012698
Protacanthopterygii	DUPLICATION
Protacanthopterygii	ANCESTRAL SPECIES		ENSGT00940000163195.A.d	ENSGT00940000165423.b	ENSGT00940000164651.a.a	ENSGT00390000010029	ENSGT00390000002457	ENSGT00390000001994	ENSGT00390000008749.e	ENSGT00390000004417.a	ENSGT00390000009677	ENSGT00940000154222.d.b	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196.b #21	ENSGT00940000156809.b.g #22	ENSGT00940000155168.a.b #23	ENSGT00940000171014	ENSGT00910000144184 #24	ENSGT00940000159705 #25	ENSGT00940000165550.a.a	ENSGT00530000063402.a	ENSGT00940000157291.i	ENSGT00390000016054.b.j	ENSGT00940000153295.a.b	ENSGT00940000158412	ENSGT00390000010045.t	ENSGT00940000156115.c	ENSGT00940000165224.a.a	ENSGT00410000025651.B	ENSGT00530000063624.C.a
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	685													ENSGT00940000157921.f #20	ENSGT00940000156196.b.e.b #21	ENSGT00940000156809.b.h #22	ENSGT00940000156809.b.g.a #22	ENSGT00940000155168.a.b.t #23	ENSGT00910000144184.g #24	ENSGT00940000159705.b #25	ENSGT00940000165550.a.a.a.b	ENSGT00940000171014	ENSGT00910000144184.h.a #24	ENSGT00940000159705.a.b #25	ENSGT00530000063402.a.u	ENSGT00940000157291.i.b
Salmoninae_a	ANCESTRAL SPECIES	28	ENSGT00390000003051.f	ENSGT00390000008029.jb	ENSGT00940000165423.b.b	ENSGT00940000164651.a.a.b	ENSGT01010000224745	ENSGT00390000002457.a	ENSGT00390000001994.j	ENSGT00390000008749.e.m	ENSGT00390000004417.a.p	ENSGT00390000009677.n	ENSGT00940000154222.d.b.m	ENSGT00940000157780.`c #17	ENSGT00940000157768 #18	ENSGT00940000157921.f #20	ENSGT00940000156196.b.e.b #21	ENSGT00940000156809.b.g.a #22	ENSGT00940000155168.a.b.t #23	ENSGT00910000144184.g #24	ENSGT00940000159705.b #25	ENSGT00940000171014	ENSGT00910000144184.h.a #24	ENSGT00940000159705.a.b #25	ENSGT00940000165550.a.b.a.b.f	ENSGT00940000165550.a.a.a.b	ENSGT00530000063402.a.u	ENSGT00940000157291.i.b	ENSGT00390000016054.b.j.e	ENSGT00940000153295.a.b.h	ENSGT00940000158412.a	ENSGT00390000010045.t	ENSGT00940000156115.c.b
Oncorhynchus	ANCESTRAL SPECIES	29	ENSGT00390000003051.f	ENSGT00390000008029.jb	ENSGT00940000165423.b.b	ENSGT00940000164651.a.a.b	ENSGT01010000224745	ENSGT00390000002457.a	ENSGT00390000001994.j	ENSGT00390000008749.e.m	ENSGT00390000004417.a.p	ENSGT00390000009677.n	ENSGT00940000154222.d.b.m	ENSGT00940000157780.`c #17	ENSGT00940000157768 #18	ENSGT00940000157921.f #20	ENSGT00940000156196.b.e.b #21	ENSGT00940000156809.b.g.a #22	ENSGT00940000155168.a.b.t #23	ENSGT00940000171014	ENSGT00910000144184.h.a #24	ENSGT00940000159705.a.b #25	ENSGT00940000165550.a.b.a.b.f	ENSGT00940000165550.a.a.a.b	ENSGT00530000063402.a.u	ENSGT00940000157291.i.b	ENSGT00390000016054.b.j.e	ENSGT00940000153295.a.b.h	ENSGT00940000158412.a	ENSGT00390000010045.t	ENSGT00940000156115.c.b	ENSGT00940000165224.a.a.i	ENSGT00530000063624.C.a.a
Oncorhynchus_a	ANCESTRAL SPECIES	29	ENSGT00390000003051.f	ENSGT00390000008029.jb	ENSGT00940000165423.b.b	ENSGT00940000164651.a.a.b	ENSGT01010000224745	ENSGT00390000002457.a	ENSGT00390000001994.j	ENSGT00390000008749.e.m	ENSGT00390000004417.a.p	ENSGT00390000009677.n	ENSGT00940000154222.d.b.m	ENSGT00940000157780.`c #17	ENSGT00940000157768 #18	ENSGT00940000157921.f #20	ENSGT00940000156196.b.e.b #21	ENSGT00940000156809.b.g.a #22	ENSGT00940000155168.a.b.t #23	ENSGT00940000171014	ENSGT00910000144184.h.a #24	ENSGT00940000159705.a.b #25	ENSGT00940000165550.a.b.a.b.f	ENSGT00940000165550.a.a.a.b	ENSGT00530000063402.a.u	ENSGT00940000157291.i.b	ENSGT00390000016054.b.j.e	ENSGT00940000153295.a.b.h	ENSGT00940000158412.a	ENSGT00390000010045.t	ENSGT00940000156115.c.b	ENSGT00940000165224.a.a.i	ENSGT00530000063624.C.a.a
Chinook salmon	MODERN SPECIES	4	phf14 (ENSOTSG00005033507)	glcci1a (ENSOTSG00005033633)	ENSOTSG00005033634	rpa3 (ENSOTSG00005033636)	c1galt1a (ENSOTSG00005033638)	tac1 (ENSOTSG00005033640)	asns (ENSOTSG00005033656)	anln (ENSOTSG00005033665)	MATCAP2 (ENSOTSG00005033666)	eepd1 (ENSOTSG00005033668)	ENSOTSG00005033669	SEPTIN7 (ENSOTSG00005033670)	lrrc3b (ENSOTSG00005033671) #17	OXSM (ENSOTSG00005033672) #18	top2b (ENSOTSG00005033681) #20	thrb (ENSOTSG00005034068) #22	nr1d2b (ENSOTSG00005035559) #23	ENSOTSG00005035560	rpl15 (ENSOTSG00005035561) #24	nkiras1 (ENSOTSG00005035563) #25	ENSOTSG00005035564	ENSOTSG00005035566	sf3a3 (ENSOTSG00005035568)	ENSOTSG00005035575	maneal (ENSOTSG00005035671)	lin28ab (ENSOTSG00005035673)	pdik1l (ENSOTSG00005035676)	ENSOTSG00005035678	ppp1r8a (ENSOTSG00005035680)	foxo6b (ENSOTSG00005035681)	cited4a (ENSOTSG00005035682)
Coho salmon	MODERN SPECIES	8	glcci1a (ENSOKIG00005015933)	umad1 (ENSOKIG00005015994)	rpa3 (ENSOKIG00005016000)	col28a1a (ENSOKIG00005016012)	c1galt1a (ENSOKIG00005016034)	ENSOKIG00005016048	tac1 (ENSOKIG00005016094)	asns (ENSOKIG00005016112)	ANLN (ENSOKIG00005016220)	MATCAP2 (ENSOKIG00005016336)	eepd1 (ENSOKIG00005016344)	SEPTIN7 (ENSOKIG00005016408)	OXSM (ENSOKIG00005017333) #18	top2b (ENSOKIG00005017507) #20	RARB (ENSOKIG00005019445) #21	thrb (ENSOKIG00005019507) #22	nr1d2b (ENSOKIG00005020024) #23	ENSOKIG00005020042	rpl15 (ENSOKIG00005020061) #24	nkiras1 (ENSOKIG00005020074) #25	ube2e1 (ENSOKIG00005020084)	ENSOKIG00005020114	sf3a3 (ENSOKIG00005020128)	ENSOKIG00005020157	maneal (ENSOKIG00005020182)	lin28ab (ENSOKIG00005020193)	pdik1l (ENSOKIG00005020263)	ENSOKIG00005020271	ENSOKIG00005020280	ppp1r8a (ENSOKIG00005020307)	foxo6b (ENSOKIG00005020329)
Salmo	ANCESTRAL SPECIES	2	ENSGT00390000003051.f	ENSGT00940000163195.A.d	ENSGT00940000164651.a.a.b	ENSGT01010000224745	ENSGT00390000002457.a	ENSGT00390000001994.j	ENSGT00390000008749.e.m	ENSGT00390000004417.a.p	ENSGT00390000009677.n	ENSGT00940000154222.d.b.m	ENSGT00940000157780.`c #17	ENSGT00940000157768 #18	ENSGT00940000157921.f #20	ENSGT00940000156196.b.e.b #21	ENSGT00940000156809.b.h #22	ENSGT00940000156809.b.g.a #22	ENSGT00940000155168.a.b.t #23	ENSGT00910000144184.h.a #24	ENSGT00940000159705.a.b #25	ENSGT00940000165550.a.b.a.b.f	ENSGT00940000165550.a.a.a.b	ENSGT00530000063402.a.u	ENSGT00940000157291.i.b	ENSGT00390000016054.b.j.e	ENSGT00940000153295.a.b.h	ENSGT00940000158412.a	ENSGT00390000010045.t	ENSGT00940000156115.c.b	ENSGT00940000165224.a.a.i	ENSGT00530000063624.C.a.a	ENSGT00910000144179.b.b.o.b.e
Atlantic salmon	MODERN SPECIES	19	ENSSSAG00000070469	c1galt1a (ENSSSAG00000119225)	ENSSSAG00000070464	TKN1 (ENSSSAG00000070461)	asns (ENSSSAG00000070395)	ANLN (ENSSSAG00000086325)	MATCAP2 (ENSSSAG00000070379)	EEPD1 (ENSSSAG00000070369)	sept7 (ENSSSAG00000069070)	LRRC3B (ENSSSAG00000082933) #17	OXSM (ENSSSAG00000069036) #18	ENSSSAG00000112392	top2b (ENSSSAG00000054874) #20	RARB (ENSSSAG00000086764) #21	ENSSSAG00000113122	thrb (ENSSSAG00000055780) #22	nr1d2b (ENSSSAG00000054663) #23	rpl15 (ENSSSAG00000055680) #24	nkiras1 (ENSSSAG00000119518) #25	ENSSSAG00000095923	ENSSSAG00000055618	sf3a3 (ENSSSAG00000055572)	ENSSSAG00000055498	maneal (ENSSSAG00000087602)	lin28ab (ENSSSAG00000101780)	pdik1l (ENSSSAG00000055455)	ppp1r8a (ENSSSAG00000055442)	foxo6b (ENSSSAG00000055440)	cited4a (ENSSSAG00000111679)	PYRG1 (ENSSSAG00000055319)	rb39b (ENSSSAG00000055291)
Huchen	MODERN SPECIES	2022															ENSHHUG00000026552	thrb (ENSHHUG00000026342) #22	nr1d2b (ENSHHUG00000026335) #23	rpl15 (ENSHHUG00000026257) #24	nkiras1 (ENSHHUG00000026253) #25	ENSHHUG00000026252	ENSHHUG00000026186	sf3a3 (ENSHHUG00000026176)	ENSHHUG00000026157
Salmoninae	ANCESTRAL SPECIES	97	ENSGT00940000165423.b.b	ENSGT00940000164651.a.a.b	ENSGT00940000179546	ENSGT01010000224745	ENSGT00390000002457.a	ENSGT00390000001994.j	ENSGT00390000008749.e.m	ENSGT00390000004417.a.p	ENSGT00390000009677.n	ENSGT00940000154222.d.b.m	ENSGT00940000157780.`c #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921.e #20	ENSGT00940000156196.b.e.a #21	ENSGT00940000156809.b.g.b #22	ENSGT00940000155168.a.b.s #23	ENSGT00910000144184.h.b #24	ENSGT00940000159705.a.a #25	ENSGT00940000165550.a.a.a.a	ENSGT00530000063402.a.v	ENSGT00940000157291.i.a	ENSGT00390000016054.b.j.f	ENSGT00940000153295.a.b.g	ENSGT00940000158412.b	ENSGT00940000156115.c.a	ENSGT00940000165224.a.a.j	ENSGT00410000025651.B	ENSGT00530000063624.C.a.b	ENSGT00910000144179.b.b.o.b.f	ENSGT00940000159933.t
Huchen	MODERN SPECIES	1427															ENSHHUG00000051302	thrb (ENSHHUG00000051305) #22	nr1d2b (ENSHHUG00000051909) #23	rpl15 (ENSHHUG00000051913) #24	nkiras1 (ENSHHUG00000051928) #25	ENSHHUG00000051938	sf3a3 (ENSHHUG00000051976)	ENSHHUG00000052006
Salmoninae_a	ANCESTRAL SPECIES	5	ENSGT00940000164651.a.a.a.b	ENSGT00390000010029.n	ENSGT01090000260131	ENSGT00940000164651.a.a.a.a	ENSGT00390000010029.m	ENSGT00390000002457.b	ENSGT00390000001994.i	ENSGT00390000008749.e.n	ENSGT00390000004417.a.o	ENSGT00390000009677.o	ENSGT00940000154222.d.b.n	ENSGT00940000157780.ac #17	ENSGT00390000006540 #19	ENSGT00940000157921.e #20	ENSGT00940000156196.b.e.a #21	ENSGT00940000156809.b.g.b #22	ENSGT00940000155168.a.b.s #23	ENSGT00910000144184.h.b #24	ENSGT00940000159705.a.a #25	ENSGT00940000165550.a.a.a.a	ENSGT00530000063402.a.v	ENSGT00940000157291.i.a	ENSGT00390000016054.b.j.f	ENSGT00940000153295.a.b.g	ENSGT00940000158412.b	ENSGT00940000156115.c.a	ENSGT00940000165224.a.a.j	ENSGT00410000025651.B	ENSGT00530000063624.C.a.b	ENSGT00910000144179.b.b.o.b.f	ENSGT00940000159933.t
Salmo	ANCESTRAL SPECIES	2	ENSGT00950000183046.b.b.g.a	ENSGT00390000003051.e	ENSGT00940000164651.a.a.a.a.a	ENSGT00940000164651.a.a.a.b.a	ENSGT00390000010029.n	ENSGT00390000002457.b	ENSGT00390000001994.i	ENSGT00390000008749.e.n	ENSGT00390000004417.a.o	ENSGT00390000009677.o	ENSGT00940000154222.d.b.n	ENSGT00940000157780.ac #17	ENSGT00390000006540 #19	ENSGT00940000157921.e #20	ENSGT00940000156196.b.e.a #21	ENSGT00940000156809.b.g.b #22	ENSGT00940000155168.a.b.s #23	ENSGT00910000144184.h.b #24	ENSGT00940000159705.a.a #25	ENSGT00940000165550.a.a.a.a	ENSGT00530000063402.a.v	ENSGT00940000157291.i.a	ENSGT00390000016054.b.j.f	ENSGT00940000153295.a.b.g	ENSGT00940000158412.b	ENSGT00940000156115.c.a	ENSGT00940000165224.a.a.j	ENSGT00410000025651.B	ENSGT00530000063624.C.a.b	ENSGT00910000144179.b.b.o.b.f	ENSGT00940000159933.t
River trout	MODERN SPECIES	29	glcci1a (ENSSTUG00000046080)	umad1 (ENSSTUG00000046104)	c1galt1a (ENSSTUG00000046109)	sdhaf3 (ENSSTUG00000046116)	c1galt1a (ENSSTUG00000046140)	asns (ENSSTUG00000046151)	anln (ENSSTUG00000046176)	MATCAP2 (ENSSTUG00000046217)	eepd1 (ENSSTUG00000046232)	SEPTIN7 (ENSSTUG00000046274)	ENSSTUG00000047074	lrrc3b (ENSSTUG00000047076) #17	ngly1 (ENSSTUG00000047079) #19	top2b (ENSSTUG00000047167) #20	RARB (ENSSTUG00000047543) #21	thrb (ENSSTUG00000047585) #22	nr1d2b (ENSSTUG00000048335) #23	rpl15 (ENSSTUG00000048344) #24	nkiras1 (ENSSTUG00000048362) #25	ENSSTUG00000048378	sf3a3 (ENSSTUG00000048405)	ENSSTUG00000048415	maneal (ENSSTUG00000048464)	lin28ab (ENSSTUG00000048469)	pdik1l (ENSSTUG00000048486)	ppp1r8a (ENSSTUG00000048509)	foxo6b (ENSSTUG00000048525)	SLFNL1 (ENSSTUG00000048553)	cited4a (ENSSTUG00000018139)	ctps1a (ENSSTUG00000018162)	rab42a (ENSSTUG00000018373)
Atlantic salmon	MODERN SPECIES	5	c1galt1a (ENSSSAG00000118836)	ENSSSAG00000089283	ENSSSAG00000120367	c1galt1a (ENSSSAG00000070466)	sdhaf3 (ENSSSAG00000101954)	tac1 (ENSSSAG00000073182)	asns (ENSSSAG00000073152)	ANLN (ENSSSAG00000073106)	MATCAP2 (ENSSSAG00000073097)	EEPD1 (ENSSSAG00000085718)	SEPTIN7 (ENSSSAG00000068816)	LRRC3B (ENSSSAG00000093716) #17	NGLY1 (ENSSSAG00000068663) #19	top2b (ENSSSAG00000056458) #20	rarb (ENSSSAG00000056234) #21	thrb (ENSSSAG00000056078) #22	nr1d2b (ENSSSAG00000056065) #23	rpl15 (ENSSSAG00000056054) #24	nkiras1 (ENSSSAG00000118164) #25	UB2E1 (ENSSSAG00000056035)	ENSSSAG00000082961	sf3a3 (ENSSSAG00000056015)	ENSSSAG00000096698	ENSSSAG00000055991	maneal (ENSSSAG00000055979)	lin28ab (ENSSSAG00000086783)	pdik1l (ENSSSAG00000106178)	ppp1r8a (ENSSSAG00000113314)	foxo6b (ENSSSAG00000055953)	ENSSSAG00000055950	cite2 (ENSSSAG00000055947)
Oncorhynchus	ANCESTRAL SPECIES	16	ENSGT00950000183046.b.b.g.a	ENSGT00390000003051.e	ENSGT00390000008029.kb	ENSGT00940000164651.a.a.a.a	ENSGT00390000010029.m	ENSGT00390000002457.b	ENSGT00390000001994.i	ENSGT00390000008749.e.n	ENSGT00390000004417.a.o	ENSGT00390000009677.o	ENSGT00940000154222.d.b.n	ENSGT00940000157780.ac #17	ENSGT00390000006540 #19	ENSGT00940000157921.e #20	ENSGT00940000156196.b.e.a #21	ENSGT00940000156809.b.g.b #22	ENSGT00940000155168.a.b.s #23	ENSGT00910000144184.h.b #24	ENSGT00940000159705.b #25	ENSGT00940000165550.a.a.a.a	ENSGT00530000063402.a.v	ENSGT00940000157291.i.a	ENSGT00390000016054.b.j.f	ENSGT00940000153295.a.b.g	ENSGT00940000158412.b	ENSGT00940000156115.c.a	ENSGT00940000165224.a.a.j	ENSGT00410000025651.B	ENSGT00530000063624.C.a.b	ENSGT00910000144179.b.b.o.b.f	ENSGT00940000159933.t
Oncorhynchus_a	ANCESTRAL SPECIES	6	ENSGT00940000173153.b	ENSGT00390000008029.kb	ENSGT00940000164651.a.a.a.a	ENSGT00940000175476	ENSGT00390000010029.m	ENSGT00390000002457.b	ENSGT00390000001994.i	ENSGT00390000008749.e.n	ENSGT00390000004417.a.o	ENSGT00390000009677.o	ENSGT00940000154222.d.b.n	ENSGT00940000157780.ac #17	ENSGT00390000006540 #19	ENSGT00940000157921.e #20	ENSGT00940000156196.b.e.a #21	ENSGT00940000156809.b.g.b #22	ENSGT00940000155168.a.b.s #23	ENSGT00910000144184.h.b #24	ENSGT00940000159705.b #25	ENSGT00940000165550.a.a.a.a	ENSGT00530000063402.a.v	ENSGT00940000157291.i.a	ENSGT00390000016054.b.j.f	ENSGT00940000153295.a.b.g	ENSGT00940000158412.b	ENSGT00940000156115.c.a	ENSGT00940000165224.a.a.j	ENSGT00410000025651.B	ENSGT00530000063624.C.a.b	ENSGT00910000144179.b.b.o.b.f	ENSGT00940000159933.t
Chinook salmon	MODERN SPECIES	24	thsd7aa (ENSOTSG00005040744)	nxph1 (ENSOTSG00005040746)	glcci1a (ENSOTSG00005040749)	ENSOTSG00005040754	rpa3 (ENSOTSG00005040755)	c1galt1a (ENSOTSG00005040758)	ENSOTSG00005040760	tac1 (ENSOTSG00005040761)	asns (ENSOTSG00005040764)	anln (ENSOTSG00005040774)	MATCAP2 (ENSOTSG00005040777)	eepd1 (ENSOTSG00005040779)	septin7a (ENSOTSG00005040786)	lrrc3b (ENSOTSG00005041749) #17	ngly1 (ENSOTSG00005041756) #19	thrb (ENSOTSG00005042042) #22	nr1d2b (ENSOTSG00005043689) #23	rpl15 (ENSOTSG00005043691) #24	nkiras1 (ENSOTSG00005043693) #25	ENSOTSG00005043694	sf3a3 (ENSOTSG00005043695)	ENSOTSG00005043696	maneal (ENSOTSG00005043698)	lin28ab (ENSOTSG00005043699)	pdik1l (ENSOTSG00005043700)	ppp1r8a (ENSOTSG00005043701)	foxo6b (ENSOTSG00005043702)	SLFNL1 (ENSOTSG00005043703)	cited4a (ENSOTSG00005043704)	ctps1a (ENSOTSG00005043705)	rab42a (ENSOTSG00005043759)
Coho salmon	MODERN SPECIES	5	ENSOKIG00005013055	sdhaf3 (ENSOKIG00005013042)	tac1 (ENSOKIG00005013026)	asns (ENSOKIG00005012975)	anln (ENSOKIG00005012931)	MATCAP2 (ENSOKIG00005012918)	EEPD1 (ENSOKIG00005012902)	ENSOKIG00005012895	SEPTIN7 (ENSOKIG00005011276)	lrrc3b (ENSOKIG00005011217) #17	ENSOKIG00005011193	ENSOKIG00005011191	ngly1 (ENSOKIG00005011152) #19	top2b (ENSOKIG00005004912) #20	RARB (ENSOKIG00005004510) #21	thrb (ENSOKIG00005004342) #22	nr1d2b (ENSOKIG00005004236) #23	rpl15 (ENSOKIG00005034488) #24	nkiras1 (ENSOKIG00005034474) #25	ENSOKIG00005034443	sf3a3 (ENSOKIG00005034257)	ENSOKIG00005034166	maneal (ENSOKIG00005034142)	lin28ab (ENSOKIG00005034113)	pdik1l (ENSOKIG00005034101)	ppp1r8a (ENSOKIG00005034076)	foxo6b (ENSOKIG00005034069)	ENSOKIG00005034046	cited4a (ENSOKIG00005034039)	ctps1a (ENSOKIG00005033841)	rab42a (ENSOKIG00005033812)
Rainbow trout	MODERN SPECIES	24	c1galt1a (ENSOMYG00000031137)	sdhaf3 (ENSOMYG00000037306)	c1galt1a (ENSOMYG00000051261)	sdhaf3 (ENSOMYG00000031121)	tac1 (ENSOMYG00000031155)	asns (ENSOMYG00000031241)	ANLN (ENSOMYG00000031565)	MATCAP2 (ENSOMYG00000031608)	EEPD1 (ENSOMYG00000031616)	SEPTIN7 (ENSOMYG00000031677)	LRRC3B (ENSOMYG00000031709) #17	NGLY1 (ENSOMYG00000031743) #19	top2b (ENSOMYG00000032934) #20	RARB (ENSOMYG00000068443) #21	ENSOMYG00000063498	thrb (ENSOMYG00000063156) #22	ENSOMYG00000063944	nr1d2b (ENSOMYG00000004684) #23	rpl15 (ENSOMYG00000051309) #24	nkiras1 (ENSOMYG00000004716) #25	ENSOMYG00000004773	sf3a3 (ENSOMYG00000004847)	mtf (ENSOMYG00000005269)	lin28ab (ENSOMYG00000062729)	pdik1l (ENSOMYG00000009401)	ppp1r8a (ENSOMYG00000048161)	foxo6b (ENSOMYG00000005645)	ENSOMYG00000055275	cited4a (ENSOMYG00000005705)	ctps1a (ENSOMYG00000005967)	rab42a (ENSOMYG00000006218)
Northern pike	MODERN SPECIES	9	slc9a1b (ENSELUG00000007970)	CFAP69 (ENSELUG00000007995)	KDM1B (ENSELUG00000008094)	ccdc127b (ENSELUG00000008130)	sdha (ENSELUG00000008178)	sdhaf3 (ENSELUG00000028468)	tac1 (ENSELUG00000008347)	asns (ENSELUG00000008407)	anln (ENSELUG00000008550)	MATCAP2 (ENSELUG00000008709)	SEPTIN7 (ENSELUG00000008840)	OXSM (ENSELUG00000008870) #18	ngly1 (ENSELUG00000008893) #19	top2b (ENSELUG00000009054) #20	RARB (ENSELUG00000009433) #21	thrb (ENSELUG00000001545) #22	nr1d2b (ENSELUG00000009789) #23	rpl15 (ENSELUG00000009814) #24	nkiras1 (ENSELUG00000009864) #25	ube2e1 (ENSELUG00000009965)	sf3a3 (ENSELUG00000010024)	ENSELUG00000010059	maneal (ENSELUG00000010088)	lin28ab (ENSELUG00000010131)	pdik1l (ENSELUG00000010146)	ppp1r8a (ENSELUG00000010170)	foxo6b (ENSELUG00000010190)	ENSELUG00000034035	ENSELUG00000010224	cited4a (ENSELUG00000010240)	ctps1a (ENSELUG00000010322)
Protacanthopterygii	ANCESTRAL SPECIES																	ENSGT00940000156809.b.h #22
Salmoninae	ANCESTRAL SPECIES	685														ENSGT00940000157921.f #20	ENSGT00940000156196.b.e.b #21	ENSGT00940000156809.b.h #22	ENSGT00940000156809.b.g.a #22	ENSGT00940000155168.a.b.t #23	ENSGT00910000144184.g #24	ENSGT00940000159705.b #25	ENSGT00940000165550.a.a.a.b	ENSGT00940000171014	ENSGT00910000144184.h.a #24	ENSGT00940000159705.a.b #25	ENSGT00530000063402.a.u	ENSGT00940000157291.i.b
Salmoninae_a	ANCESTRAL SPECIES																	ENSGT00940000156809.b.h #22
Salmo	ANCESTRAL SPECIES	2	ENSGT00390000008029.jb	ENSGT00390000003051.f	ENSGT00940000163195.A.d	ENSGT00940000164651.a.a.b	ENSGT01010000224745	ENSGT00390000002457.a	ENSGT00390000001994.j	ENSGT00390000008749.e.m	ENSGT00390000004417.a.p	ENSGT00390000009677.n	ENSGT00940000154222.d.b.m	ENSGT00940000157780.`c #17	ENSGT00940000157768 #18	ENSGT00940000157921.f #20	ENSGT00940000156196.b.e.b #21	ENSGT00940000156809.b.h #22	ENSGT00940000156809.b.g.a #22	ENSGT00940000155168.a.b.t #23	ENSGT00910000144184.h.a #24	ENSGT00940000159705.a.b #25	ENSGT00940000165550.a.b.a.b.f	ENSGT00940000165550.a.a.a.b	ENSGT00530000063402.a.u	ENSGT00940000157291.i.b	ENSGT00390000016054.b.j.e	ENSGT00940000153295.a.b.h	ENSGT00940000158412.a	ENSGT00390000010045.t	ENSGT00940000156115.c.b	ENSGT00940000165224.a.a.i	ENSGT00530000063624.C.a.a
River trout	MODERN SPECIES	27	glcci1a (ENSSTUG00000044864)	ENSSTUG00000044856	rpa3 (ENSSTUG00000044832)	ENSSTUG00000044786	c1galt1a (ENSSTUG00000044770)	ENSSTUG00000044763	tac1 (ENSSTUG00000044745)	asns (ENSSTUG00000044685)	anln (ENSSTUG00000044633)	MATCAP2 (ENSSTUG00000044618)	eepd1 (ENSSTUG00000044604)	septin7a (ENSSTUG00000042870)	OXSM (ENSSTUG00000042672) #18	top2b (ENSSTUG00000041492) #20	RARB (ENSSTUG00000041103) #21	thrb (ENSSTUG00000040805) #22	nr1d2b (ENSSTUG00000040764) #23	rpl15 (ENSSTUG00000040748) #24	nkiras1 (ENSSTUG00000040729) #25	ube2e1 (ENSSTUG00000040714)	ENSSTUG00000040585	sf3a3 (ENSSTUG00000040489)	ENSSTUG00000040461	maneal (ENSSTUG00000040451)	lin28ab (ENSSTUG00000040399)	pdik1l (ENSSTUG00000040387)	ENSSTUG00000040378	ppp1r8a (ENSSTUG00000040372)	foxo6b (ENSSTUG00000040368)	cited4a (ENSSTUG00000040361)	ctps1a (ENSSTUG00000040104)
Oncorhynchus	ANCESTRAL SPECIES																	ENSGT00940000156809.b.h #22
Rainbow trout	MODERN SPECIES	9	umad1 (ENSOMYG00000012774)	rpa3 (ENSOMYG00000012767)	col28a1a (ENSOMYG00000012727)	c1galt1a (ENSOMYG00000031110)	tac1 (ENSOMYG00000012700)	asns (ENSOMYG00000012663)	ANLN (ENSOMYG00000012588)	MATCAP2 (ENSOMYG00000012531)	ENSOMYG00000055716	EEPD1 (ENSOMYG00000012521)	SEPTIN7 (ENSOMYG00000011188)	OXSM (ENSOMYG00000011033) #18	top2b (ENSOMYG00000010443) #20	RARB (ENSOMYG00000010131) #21	ENSOMYG00000076252	thrb (ENSOMYG00000004119) #22	nr1d2b (ENSOMYG00000010024) #23	ENSOMYG00000072902	rl15 (ENSOMYG00000009997) #24	nkiras1 (ENSOMYG00000009979) #25	ENSOMYG00000073320	ENSOMYG00000009959	sf3a3 (ENSOMYG00000009729)	ENSOMYG00000009686	maneal (ENSOMYG00000009478)	lin28ab (ENSOMYG00000009440)	ENSOMYG00000066394	pdik1l (ENSOMYG00000068142)	ENSOMYG00000009378	ppp1r8a (ENSOMYG00000005622)	foxo6b (ENSOMYG00000009336)
Otomorpha	ANCESTRAL SPECIES	9	ENSGT00940000163195.A.d	ENSGT00940000165423.b	ENSGT00940000164651.a.a	ENSGT00390000010029	ENSGT00390000002457	ENSGT00390000001994	ENSGT00390000008749.e	ENSGT00390000004417.a	ENSGT00390000009677	ENSGT00940000154222.d.b	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196.b #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00940000171014	ENSGT00910000144184 #24	ENSGT00940000159705 #25	ENSGT00940000165550.a.b.a.b	ENSGT00940000165550.a.a	ENSGT00530000063402.a	ENSGT00390000016054.b.j	ENSGT00940000153295.a.b	ENSGT00940000158412	ENSGT00390000010045.t	ENSGT00940000156115.c	ENSGT00940000165224.a.a	ENSGT00410000025651.B	ENSGT00530000063624.C.a
Clupeiformes	ANCESTRAL SPECIES	58	ENSGT00390000003051	ENSGT00390000008029	ENSGT00940000163195.A.d	ENSGT00390000010029	ENSGT00390000002457	ENSGT00390000001994	ENSGT00390000008749.e	ENSGT00390000004417.a	ENSGT00390000009677	ENSGT00940000154222.d.b	ENSGT00940000157780 #17	ENSGT00940000157768 #18	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196.b #21	ENSGT00940000156809.b #22	ENSGT00940000156595	ENSGT00390000005939.a.a.a	ENSGT00390000007346.b	ENSGT00940000164547.b.a	ENSGT00940000164970	ENSGT00390000002061	ENSGT00940000156172.b	ENSGT00940000155294	ENSGT00940000157988	ENSGT00940000157068.c	ENSGT01030000234597.a.b.b.e.b	ENSGT00940000165898	ENSGT00940000153717.a.a	ENSGT00940000153270.a	ENSGT00390000008115
Denticle herring	MODERN SPECIES	12	glcci1a (ENSDCDG00000027131)	rpa3 (ENSDCDG00000027136)	ENSDCDG00000027144	sdhaf3 (ENSDCDG00000027153)	tac1 (ENSDCDG00000027157)	asns (ENSDCDG00000027164)	anln (ENSDCDG00000027180)	MATCAP2 (ENSDCDG00000027194)	eepd1 (ENSDCDG00000027196)	SEPTIN7 (ENSDCDG00000027223)	lrrc3b (ENSDCDG00000029050) #17	OXSM (ENSDCDG00000029056) #18	ngly1 (ENSDCDG00000029062) #19	top2b (ENSDCDG00000029110) #20	RARB (ENSDCDG00000031332) #21	thrb (ENSDCDG00000031356) #22	gmpr (ENSDCDG00000031464)	atxn1a (ENSDCDG00000031476)	ENSDCDG00000031477	fabp4a (ENSDCDG00000031478)	mrpl53 (ENSDCDG00000031481)	PAG1 (ENSDCDG00000031482)	znf704 (ENSDCDG00000031484)	tpd52 (ENSDCDG00000031486)	zbtb10 (ENSDCDG00000031487)	hey1 (ENSDCDG00000031489)	stmn2b (ENSDCDG00000031493)	si:dkeyp-120h9.1 (ENSDCDG00000031496)	ripor2 (ENSDCDG00000031505)	gmnn (ENSDCDG00000031554)	ENSDCDG00000031558
Atlantic herring	MODERN SPECIES	10	ENSCHAG00000014187	ENSCHAG00000014180	GPNMB (ENSCHAG00000014124)	igf2bp3 (ENSCHAG00000012923)	tra2a (ENSCHAG00000012717)	ccdc126 (ENSCHAG00000012713)	ENSCHAG00000012707	anln (ENSCHAG00000012650)	MATCAP2 (ENSCHAG00000012641)	eepd1 (ENSCHAG00000012590)	SEPTIN7 (ENSCHAG00000010779)	OXSM (ENSCHAG00000010728) #18	ngly1 (ENSCHAG00000010610) #19	top2b (ENSCHAG00000005470) #20	RARB (ENSCHAG00000004943) #21	thrb (ENSCHAG00000003500) #22	gmpr (ENSCHAG00000002578)	atxn1a (ENSCHAG00000002466)	gdf6b (ENSCHAG00000002150)	ENSCHAG00000002102	CCNE2 (ENSCHAG00000002021)	ints8 (ENSCHAG00000001734)	DPY19L4 (ENSCHAG00000001096)	psmb10 (ENSCHAG00000000659)	ENSCHAG00000000559	ENSCHAG00000006949	ENSCHAG00000006924	ENSCHAG00000006821	atp5if1a (ENSCHAG00000006792)	col9a2 (ENSCHAG00000006760)	ENSCHAG00000006743
Otophysi	ANCESTRAL SPECIES	135											ENSGT00390000010779.a.b.a	ENSGT00530000063631.a.k	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196.b #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184 #24	ENSGT00940000159705 #25	ENSGT00940000165550.a.b.a.b	ENSGT00940000161037	ENSGT00940000155168.a.a ##23	ENSGT00940000165358	ENSGT00940000165550.a.a	ENSGT00530000063402.a	ENSGT00390000016054.b.j	ENSGT00940000153295.a.b	ENSGT00940000158412	ENSGT00390000010045.t	ENSGT00940000156115.c	ENSGT00940000165224.a.a
Characiphysae	ANCESTRAL SPECIES	132											ENSGT00390000010779.a.b.a	ENSGT00530000063631.a.k	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196.b #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184 #24	ENSGT00940000159705 #25	ENSGT00940000165550.a.b.a.b	ENSGT00940000165550.a.a	ENSGT00530000063402.a	ENSGT00390000016054.b.j	ENSGT00940000153295.a.b	ENSGT00940000158412	ENSGT00390000010045.t	ENSGT00940000156115.c	ENSGT00940000165224.a.a	ENSGT00410000025651.B	ENSGT00530000063624.C.a	ENSGT00910000144179.b.b.o.b
Channel catfish	MODERN SPECIES	3	runx1t1 (ENSIPUG00000012904)	triqk (ENSIPUG00000012879)	fam92a1 (ENSIPUG00000012853)	Trib1 (ENSIPUG00000012834)	lratd2a (ENSIPUG00000012820)	fam91a1 (ENSIPUG00000012746)	klhl38a (ENSIPUG00000012729)	spire1a (ENSIPUG00000012501)	ENSIPUG00000012463	atp6v1c1b (ENSIPUG00000012415)	txnl4a (ENSIPUG00000012382)	adnp2b (ENSIPUG00000012367)	ngly1 (ENSIPUG00000012265) #19	TOP2B (ENSIPUG00000012089) #20	rarb (ENSIPUG00000011940) #21	thrb (ENSIPUG00000011865) #22	NR1D2 (ENSIPUG00000011821) #23	rpl15 (ENSIPUG00000011749) #24	nkiras1 (ENSIPUG00000011718) #25	ube2e1 (ENSIPUG00000011687)	ENSIPUG00000011658	sf3a3 (ENSIPUG00000011603)	maneal (ENSIPUG00000011596)	lin28ab (ENSIPUG00000011583)	pdik1l (ENSIPUG00000011556)	ENSIPUG00000011543	ppp1r8a (ENSIPUG00000011521)	foxo6b (ENSIPUG00000011512)	ENSIPUG00000011495	cited4a (ENSIPUG00000011473)	ctps1a (ENSIPUG00000011419)
Characiphysae_b	ANCESTRAL SPECIES	17	ENSGT00940000162855.a.a.a.b	ENSGT00390000002661.b.ub.a	ENSGT00530000063880.b.e	ENSGT01100000263484.B.b.b.a.a	ENSGT00390000007776	ENSGT00940000157594	ENSGT00940000160140.a.a	ENSGT00940000156934.k	ENSGT00390000007597	ENSGT00940000163253.a.a.b	ENSGT00390000010779.a.b.a	ENSGT00530000063631.a.k	ENSGT00390000006540 #19	ENSGT00940000157921 #20	ENSGT00940000156196.b #21	ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184 #24	ENSGT00940000159705 #25	ENSGT00940000165550.a.b.a.b	ENSGT00940000165550.a.a	ENSGT00530000063402.a	ENSGT00390000016054.b.j	ENSGT00940000153295.a.b	ENSGT00940000158412	ENSGT00390000010045.t	ENSGT00940000156115.c	ENSGT00940000165224.a.a	ENSGT00530000063624.C.a	ENSGT00910000144179.b.b.o.b	ENSGT00940000159933
Characoidei	ANCESTRAL SPECIES	248																ENSGT00940000156809.b #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184 #24	ENSGT00940000159705 #25	ENSGT00940000165550.a.b.a.b	ENSGT00940000165550.a.a	ENSGT00530000063402.a	ENSGT00390000016054.b.j	ENSGT00940000153295.a.b	ENSGT00940000158412	ENSGT00390000010045.t	ENSGT00940000156115.c	ENSGT00940000165224.a.a	ENSGT00530000063624.C.a	ENSGT00910000144179.b.b.o.b	ENSGT00940000159933
Red-bellied piranha	MODERN SPECIES	439																thrb (ENSPNAG00000010105) #22	nr1d2b (ENSPNAG00000010148) #23	rpl15 (ENSPNAG00000010165) #24	nkiras1 (ENSPNAG00000010179) #25	ube2e1 (ENSPNAG00000010206)	ENSPNAG00000001377	sf3a3 (ENSPNAG00000010298)
Mexicana tetra	MODERN SPECIES	108															ENSAMXG00000036307	thrb (ENSAMXG00000016942) #22	nr1d2b (ENSAMXG00000016930) #23	rpl15 (ENSAMXG00000037435) #24	nkiras1 (ENSAMXG00000029699) #25	ube2e1 (ENSAMXG00000032462)	ENSAMXG00000030296	sf3a3 (ENSAMXG00000016855)	maneal (ENSAMXG00000016836)	lin28ab (ENSAMXG00000038508)	pdik1l (ENSAMXG00000043006)	RPA2 (ENSAMXG00000034256)	ppp1r8a (ENSAMXG00000016774)	foxo6b (ENSAMXG00000016750)
Electric eel	MODERN SPECIES	504						ENSEEEG00000022124	CCNE2 (ENSEEEG00000022127)	ints8 (ENSEEEG00000022138)	ENSEEEG00000022147	txnl4a (ENSEEEG00000022148)	adnp2b (ENSEEEG00000022149)	nutf2l (ENSEEEG00000022152)	ngly1 (ENSEEEG00000022154) #19	top2b (ENSEEEG00000022197) #20	RARB (ENSEEEG00000022733) #21	thrb (ENSEEEG00000022743) #22	nr1d2b (ENSEEEG00000022807) #23	rpl15 (ENSEEEG00000022809) #24	nkiras1 (ENSEEEG00000022812) #25
Cyprinoidei	DUPLICATION
Cyprinoidei	ANCESTRAL SPECIES																	ENSGT00940000156809.b.i #22
Cyprininae	ANCESTRAL SPECIES	560				ENSGT00940000161047.b	ENSGT01100000263514.B.u.b	ENSGT00980000199469.a	ENSGT01100000263531.A.i.a.a.a.a	ENSGT00390000007597.h	ENSGT00940000156934.k.b	ENSGT00940000161029	ENSGT00940000157921.c #20	ENSGT00940000156196.b.h.a #21	ENSGT00940000156809.b.j.a #22	ENSGT00940000155168.a.b.r #23	ENSGT00940000156196.b.g #21	ENSGT00940000156809.b.i #22	ENSGT00940000155168.a.b.q #23	ENSGT00910000144184 #24	ENSGT00940000159705 #25	ENSGT00940000165550.a.b.a.b	ENSGT00530000063402.a.q.b	ENSGT01090000260029.a.b.b.b.a.b.b.a
Cyprininae_a	ANCESTRAL SPECIES	859															ENSGT00940000156196.b.g #21	ENSGT00940000156809.b.i #22	ENSGT00940000155168.a.b.q #23
Golden-line barbel	MODERN SPECIES	988							psmb10 (ENSSGRG00000021189)	selenoh (ENSSGRG00000021192)	ENSSGRG00000021194	ENSSGRG00000021195	ENSSGRG00000021197	ints8 (ENSSGRG00000021201)	CCNE2 (ENSSGRG00000021742)	top2b (ENSSGRG00000021800) #20	RARB (ENSSGRG00000023833) #21	THRB (ENSSGRG00000023839) #22	nr1d2b (ENSSGRG00000024214) #23	nkiras1 (ENSSGRG00000024215) #25	ube2e1 (ENSSGRG00000024219)	ENSSGRG00000024230	sf3a3 (ENSSGRG00000024232)
Cyprinoidei	ANCESTRAL SPECIES	112										ENSGT00940000163253.a.a.b	ENSGT00390000007597	ENSGT00940000156934.k	ENSGT00940000161029	ENSGT00940000157921 #20	ENSGT00940000156196.b #21	ENSGT00940000156809.b.j #22	ENSGT00940000155168.a.b #23	ENSGT00910000144184 #24	ENSGT00940000159705 #25	ENSGT00940000165550.a.b.a.b	ENSGT00940000165358	ENSGT00530000063402.a	ENSGT00390000016054.b.j	ENSGT00990000203811	ENSGT01030000234597.b.a.b.d	ENSGT00940000157151.d	ENSGT00410000025596.a.b.b	ENSGT00940000159933	ENSGT00910000144179.b.b.o.b	ENSGT00530000063624.C.a	ENSGT00940000165224.a.a
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	560							ENSGT00940000161047.b	ENSGT01100000263514.B.u.b	ENSGT00980000199469.a	ENSGT01100000263531.A.i.a.a.a.a	ENSGT00390000007597.h	ENSGT00940000156934.k.b	ENSGT00940000161029	ENSGT00940000157921.c #20	ENSGT00940000156196.b.h.a #21	ENSGT00940000156809.b.j.a #22	ENSGT00940000155168.a.b.r #23	ENSGT00940000156196.b.g #21	ENSGT00940000156809.b.i #22	ENSGT00940000155168.a.b.q #23	ENSGT00910000144184 #24	ENSGT00940000159705 #25	ENSGT00940000165550.a.b.a.b	ENSGT00530000063402.a.q.b	ENSGT01090000260029.a.b.b.b.a.b.b.a
Goldfish	MODERN SPECIES	10	ENSCARG00000002158	ENSCARG00000002072	p3h4 (ENSCARG00000002051)	FKBP10 (ENSCARG00000002029)	NT5C3B (ENSCARG00000002020)	psmb10 (ENSCARG00000001986)	selenoh (ENSCARG00000024054)	ENSCARG00000024047	ENSCARG00000023970	CCNE2 (ENSCARG00000023946)	ENSCARG00000023932	ENSCARG00000023926	top2b (ENSCARG00000023038) #20	ENSCARG00000022992	RARB (ENSCARG00000022949) #21	thrb (ENSCARG00000022786) #22	ENSCARG00000022764 #23	ENSCARG00000022747	ENSCARG00000022740	nr1d2b (ENSCARG00000022698) #23	rpl15 (ENSCARG00000022681) #24	ube2e1 (ENSCARG00000022672)	sf3a3 (ENSCARG00000022609)	ENSCARG00000022570	ENSCARG00000022558	lin28ab (ENSCARG00000022544)	pdik1l (ENSCARG00000022539)	ppp1r8a (ENSCARG00000022528)	foxo6b (ENSCARG00000022521)	ENSCARG00000022515	cited4a (ENSCARG00000022513)
Cyprininae_a	ANCESTRAL SPECIES	496								ENSGT00940000161047.b	ENSGT01100000263514.B.u.b	ENSGT00980000199469.a	ENSGT01100000263531.A.i.a.a.a.a	ENSGT00390000007597.h	ENSGT00940000156934.k.b	ENSGT00940000157921.c #20	ENSGT00940000156196.b.h.a #21	ENSGT00940000156809.b.j.a #22	ENSGT00940000155168.a.b.r #23	ENSGT00910000144184 #24	ENSGT00940000159705 #25	ENSGT00940000165550.a.b.a.b.b	ENSGT00530000063402.a.q.b	ENSGT01090000260029.a.b.b.b.a.b.b.a
Common carp reference	MODERN SPECIES	12	ENSCCRG00000051234	ENSCCRG00000079274	ENSCCRG00000074418	ENSCCRG00000077035	ENSCCRG00000055843	ENSCCRG00000004704	ENSCCRG00000004712	ENSCCRG00000062985	ENSCCRG00000019926	ints8 (ENSCCRG00000034766)	ENSCCRG00000038608	ENSCCRG00000065576	ENSCCRG00000019890	top2b (ENSCCRG00000030918) #20	RARB (ENSCCRG00000033162) #21	thrb (ENSCCRG00000049264) #22	ENSCCRG00000060173	ENSCCRG00000078080	ENSCCRG00000073902	nr1d2b (ENSCCRG00000013278) #23	rpl15 (ENSCCRG00000012127) #24	ube2e1 (ENSCCRG00000000633)	ENSCCRG00000071760	sf3a3 (ENSCCRG00000044466)	ENSCCRG00000072479	ENSCCRG00000072064	ENSCCRG00000017342	ENSCCRG00000058410	ENSCCRG00000070037	ENSCCRG00000061336	ENSCCRG00000053611
Golden-line barbel	MODERN SPECIES	1389																thrb (ENSSGRG00000026546) #22	nr1d2b (ENSSGRG00000027093) #23	rpl15 (ENSSGRG00000027094) #24	nkiras1 (ENSSGRG00000027095) #25	ube2e1 (ENSSGRG00000027096)
Cyprininae	ANCESTRAL SPECIES																	ENSGT00940000156809.b.j.b #22
Cyprininae_a	ANCESTRAL SPECIES																	ENSGT00940000156809.b.j.b #22
Common carp reference	MODERN SPECIES	31	ENSCCRG00000052951	stmn1a (ENSCCRG00000046761)	ENSCCRG00000059931	maneal (ENSCCRG00000070928)	ENSCCRG00000019933	ENSCCRG00000050877	ENSCCRG00000006971	ENSCCRG00000013304	ENSCCRG00000006939	ENSCCRG00000069138	ENSCCRG00000028635	ENSCCRG00000027822	top2b (ENSCCRG00000076497) #20	RARB (ENSCCRG00000040324) #21	ENSCCRG00000071239	thrb (ENSCCRG00000007440) #22	ENSCCRG00000049246	ENSCCRG00000037699	nr1d2b (ENSCCRG00000056379) #23	nkiras1 (ENSCCRG00000013262) #25	ENSCCRG00000072208 #24	ube2e1 (ENSCCRG00000059146)	ENSCCRG00000058271	sf3a3 (ENSCCRG00000074970)	ENSCCRG00000060457	ENSCCRG00000038613	ENSCCRG00000075913	ENSCCRG00000022184	ppt2b (ENSCCRG00000073848)	ddah2 (ENSCCRG00000061574)	clic1 (ENSCCRG00000068774)
Goldfish	MODERN SPECIES	55	her12 (ENSCARG00000028099)	tas1r1 (ENSCARG00000028052)	IFFO2 (ENSCARG00000028015)	UBR4 (ENSCARG00000025664)	ENSCARG00000025442	clic1 (ENSCARG00000025427)	ENSCARG00000025421	ENSCARG00000025418	ddah2 (ENSCARG00000025406)	cratb (ENSCARG00000024076)	ENSCARG00000024026	ENSCARG00000023958	ENSCARG00000023884	ENSCARG00000024863	ENSCARG00000024858	thrb (ENSCARG00000024473) #22	ENSCARG00000024443	ENSCARG00000024439	ENSCARG00000024430	ENSCARG00000024428	ENSCARG00000024423	nr1d2b (ENSCARG00000024411) #23	ENSCARG00000024407	rpl15 (ENSCARG00000024389) #24	nkiras1 (ENSCARG00000024365) #25	ube2e1 (ENSCARG00000024353)	sf3a3 (ENSCARG00000024313)	ENSCARG00000024293	maneal (ENSCARG00000024283)	stmn1a (ENSCARG00000024264)	ENSCARG00000024254
Zebrafish	MODERN SPECIES	10	clic1 (ENSDARG00000103340)	ENSDARG00000116617	ENSDARG00000099289	VPS52 (ENSDARG00000099258)	rps18 (ENSDARG00000100392)	FKBP10 (ENSDARG00000099183)	p3h4 (ENSDARG00000104089)	ENSDARG00000101612	42sp43 (ENSDARG00000104170)	nfe2l3 (ENSDARG00000019810)	cbx3a (ENSDARG00000003860)	snx10a (ENSDARG00000004405)	ints8 (ENSDARG00000057986)	top2b (ENSDARG00000034195) #20	ENSDARG00000107952	thrb (ENSDARG00000021163) #22	nr1d2b (ENSDARG00000009594) #23	rpl15 (ENSDARG00000009285) #24	nkiras1 (ENSDARG00000099527) #25	ube2e1 (ENSDARG00000116649)	sf3a3 (ENSDARG00000100114)	maneal (ENSDARG00000056450)	stmn1a (ENSDARG00000004169)	PTPRU (ENSDARG00000092638)	gmeb1 (ENSDARG00000062060)	rab42a (ENSDARG00000034215)	ctps1a (ENSDARG00000030700)	cited4a (ENSDARG00000035990)	foxo6b (ENSDARG00000024619)	ppp1r8a (ENSDARG00000007186)	pdik1l (ENSDARG00000056509)
Spotted gar	MODERN SPECIES	649	poc1bl (ENSLOCG00000007151)	si:dkey-184p18.2 (ENSLOCG00000007138)	rp9 (ENSLOCG00000007119)	elmo1 (ENSLOCG00000007091)	anln (ENSLOCG00000007059)	MATCAP2 (ENSLOCG00000007046)	eepd1 (ENSLOCG00000007030)	septin7a (ENSLOCG00000006999)	NEK10 (ENSLOCG00000006970)	lrrc3b (ENSLOCG00000018332) #17	OXSM (ENSLOCG00000006960) #18	ngly1 (ENSLOCG00000006940) #19	top2b (ENSLOCG00000006909) #20	RARB (ENSLOCG00000006890) #21	ENSLOCG00000006874	thrb (ENSLOCG00000006846) #22	nr1d2b (ENSLOCG00000006818) #23	rpl15 (ENSLOCG00000006808) #24	nkiras1 (ENSLOCG00000006787) #25	UBE2E1 (ENSLOCG00000006775) #26	UBE2E2 (ENSLOCG00000006730) #27	ENSLOCG00000006712	ENSLOCG00000006695	ENSLOCG00000006661 ##30	kat2b (ENSLOCG00000006617) #31	PP2D1 (ENSLOCG00000006606) #32	rab5ab (ENSLOCG00000006591) #33	efhb (ENSLOCG00000006567) #34	KCNH8 (ENSLOCG00000006545) #36	satb1a (ENSLOCG00000006524) ##37	tbc1d5 (ENSLOCG00000006501)
Reedfish	MODERN SPECIES	4	si:dkey-184p18.2 (ENSECRG00000015259)	rp9 (ENSECRG00000015285)	elmo1 (ENSECRG00000015389)	anln (ENSECRG00000015627)	MATCAP2 (ENSECRG00000015772)	eepd1 (ENSECRG00000015798)	septin7a (ENSECRG00000015883)	NEK10 (ENSECRG00000016091)	ENSECRG00000016198	lrrc3b (ENSECRG00000016232) #17	ENSECRG00000016253	OXSM (ENSECRG00000016269) #18	ngly1 (ENSECRG00000016296) #19	top2b (ENSECRG00000016352) #20	RARB (ENSECRG00000016474) #21	thrb (ENSECRG00000016712) #22	nr1d2b (ENSECRG00000018140) #23	rpl15 (ENSECRG00000018179) #24	ENSECRG00000018203	nkiras1 (ENSECRG00000018221) #25	UBE2E1 (ENSECRG00000018245) #26	ENSECRG00000018320	UBE2E2 (ENSECRG00000018668) #27	ZNF385D (ENSECRG00000018686) #29	ENSECRG00000018715 ##30	kat2b (ENSECRG00000018781) #31	ddx21 (ENSECRG00000019058)	PP2D1 (ENSECRG00000020433) #32	rab5ab (ENSECRG00000020444) #33	ENSECRG00000020467	KCNH8 (ENSECRG00000020514) #36