Artiodactyla_a	ANCESTRAL SPECIES	23	ENSGT00940000154619.g.b.a.b	ENSGT00940000154619.g.b.a.a	ENSGT00940000162241	ENSGT00940000163783	ENSGT00940000164306	ENSGT00940000163651	ENSGT00940000164510	ENSGT00940000156425 #18	ENSGT00940000163210 #19	ENSGT00940000164004	ENSGT00940000163463 #20	ENSGT00940000163292	ENSGT00940000162380	ENSGT00390000003354 #21	ENSGT00990000205479	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000155412.b #26	ENSGT00940000164135 #27	ENSGT00390000005065.d #28	ENSGT00940000160969 #29	ENSGT00530000064158 #30	ENSGT01030000234518.C.a.a #31	ENSGT00510000047802 #32	ENSGT00390000005100 #35	ENSGT01050000244887.A.a.a.b #36	ENSGT00390000014512 #37	ENSGT00940000162311	ENSGT00940000162431
Artiodactyla_b	ANCESTRAL SPECIES	23	ENSGT00940000154619.g.a.b.b	ENSGT00940000154619.g.b.a.b	ENSGT00940000154619.g.b.a.a	ENSGT00940000162241	ENSGT00940000163783	ENSGT00940000164306	ENSGT00940000164510.a	ENSGT00940000156425 #18	ENSGT00940000163210 #19	ENSGT00940000164004	ENSGT00940000163463 #20	ENSGT00940000163292	ENSGT00940000162380	ENSGT00390000003354 #21	ENSGT00990000205479	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000155412.b #26	ENSGT00940000164135 #27	ENSGT00390000005065.d #28	ENSGT00940000160969 #29	ENSGT00530000064158 #30	ENSGT01030000234518.C.a.a #31	ENSGT00510000047802 #32	ENSGT00390000005100 #35	ENSGT01050000244887.A.a.a.b #36	ENSGT00390000014512 #37	ENSGT00940000162311	ENSGT00940000162431
Cetacea	ANCESTRAL SPECIES	1	ENSGT00530000063460.B #12	ENSGT00390000006876 #13	ENSGT00940000158870 #14	ENSGT00940000158404 #15	ENSGT00940000164108.b	ENSGT00940000163012 #16	ENSGT00940000160844.c #17	ENSGT00940000156425 #18	ENSGT00940000163210 #19	ENSGT00940000164004	ENSGT00940000163463 #20	ENSGT00940000162380	ENSGT00940000153165.a.b.a.t.a	ENSGT00390000003354 #21	ENSGT00990000205479	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000155412.b #26	ENSGT00940000164135 #27	ENSGT00390000005065.d #28	ENSGT00940000160969 #29	ENSGT00530000064158 #30	ENSGT01030000234518.C.a.a #31	ENSGT00510000047802 #32	ENSGT00390000005100 #35	ENSGT01050000244887.A.a.a.b #36	ENSGT00390000014512 #37	ENSGT00940000162311	ENSGT00940000162431
Odontoceti	ANCESTRAL SPECIES	1	ENSGT00940000154595 #11	ENSGT00530000063460.B #12	ENSGT00390000006876 #13	ENSGT00940000158870 #14	ENSGT00940000158404 #15	ENSGT00940000164108.b	ENSGT00940000163012 #16	ENSGT00940000160844.c #17	ENSGT00940000156425 #18	ENSGT00940000163210 #19	ENSGT00940000164004	ENSGT00940000163463 #20	ENSGT00940000162380	ENSGT00390000003354 #21	ENSGT00990000205479	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000155412.b #26	ENSGT00940000164135 #27	ENSGT00390000005065.d #28	ENSGT00940000160969 #29	ENSGT00530000064158 #30	ENSGT01030000234518.C.a.a #31	ENSGT00510000047802 #32	ENSGT00390000005100 #35	ENSGT01050000244887.A.a.a.b #36	ENSGT00390000014512 #37	ENSGT00940000162311	ENSGT00940000162431
Odontoceti_a	ANCESTRAL SPECIES	1	ENSGT00530000063460.B #12	ENSGT00390000006876 #13	ENSGT00940000158870 #14	ENSGT00940000158404 #15	ENSGT00940000164108.b	ENSGT00940000163012 #16	ENSGT00940000160844.c #17	ENSGT00940000156425 #18	ENSGT00940000163210 #19	ENSGT00940000164004	ENSGT00940000163463 #20	ENSGT00940000163292	ENSGT00940000153686.i	ENSGT00390000003354 #21	ENSGT00990000205479	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000155412.b #26	ENSGT00940000164135 #27	ENSGT00390000005065.d #28	ENSGT00940000160969 #29	ENSGT00530000064158 #30	ENSGT01030000234518.C.a.a #31	ENSGT00510000047802 #32	ENSGT00390000005100 #35	ENSGT01050000244887.A.a.a.b #36	ENSGT00390000014512 #37	ENSGT00940000162311	ENSGT00940000162431
Odontoceti_b	ANCESTRAL SPECIES	1	ENSGT00940000154595 #11	ENSGT00530000063460.B #12	ENSGT00390000006876 #13	ENSGT00940000158870 #14	ENSGT00940000158404 #15	ENSGT00940000164108.b	ENSGT00940000163012 #16	ENSGT00940000160844.c #17	ENSGT00940000156425 #18	ENSGT00940000163210 #19	ENSGT00940000163463 #20	ENSGT00940000163292	ENSGT00940000153686.i	ENSGT00390000003354 #21	ENSGT00990000205479	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000155412.b #26	ENSGT00940000164135 #27	ENSGT00390000005065.d #28	ENSGT00940000160969 #29	ENSGT00530000064158 #30	ENSGT01030000234518.C.a.a #31	ENSGT00510000047802 #32	ENSGT00390000005100 #35	ENSGT01050000244887.A.a.a.b #36	ENSGT00390000014512 #37	ENSGT00940000162311	ENSGT00940000162431
Monodontidae	ANCESTRAL SPECIES	17	ENSGT00940000159478 #8	ENSGT00940000161659 #9	ENSGT00940000158995 #10	ENSGT00940000154595 #11	ENSGT00530000063460.B #12	ENSGT00390000006876 #13	ENSGT00940000158870 #14	ENSGT00940000158404 #15	ENSGT00940000163012 #16	ENSGT00940000160844.c #17	ENSGT00940000156425 #18	ENSGT00940000163210 #19	ENSGT00940000163463 #20	ENSGT00390000003354 #21	ENSGT00990000205479	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000155412.b #26	ENSGT00940000164135 #27	ENSGT00390000005065.d #28	ENSGT00940000160969 #29	ENSGT00530000064158 #30	ENSGT01030000234518.C.a.a #31	ENSGT00510000047802 #32	ENSGT00390000005100 #35	ENSGT01050000244887.A.a.a.b #36	ENSGT00390000014512 #37	ENSGT00940000162311	ENSGT00940000162431
Narwhal	MODERN SPECIES	298	KANK3 (ENSMMNG00015019936) #7	ANGPTL4 (ENSMMNG00015019994) #8	RAB11B (ENSMMNG00015020044) #9	MARCHF2 (ENSMMNG00015020080) #10	HNRNPM (ENSMMNG00015020142) #11	PRAM1 (ENSMMNG00015020241) #12	ZNF414 (ENSMMNG00015020270) #13	MYO1F (ENSMMNG00015020312) #14	ADAMTS10 (ENSMMNG00015020451) #15	ACTL9 (ENSMMNG00015020513) #16	ENSMMNG00015020529 #17	ENSMMNG00015020570 #18	ZNF699 (ENSMMNG00015020612) #19	ENSMMNG00015020652 #20	FBXL12 (ENSMMNG00015020707) #21	UBL5 (ENSMMNG00015020729) #22	PIN1 (ENSMMNG00015020753) #23	OLFM2 (ENSMMNG00015020773) #24	COL5A3 (ENSMMNG00015020837) #25	RDH8 (ENSMMNG00015020928) #26	ENSMMNG00015020960 #27	SHFL (ENSMMNG00015021020) #28	ANGPTL6 (ENSMMNG00015021045) #29	PPAN (ENSMMNG00015021073) #30	P2RY11 (ENSMMNG00015021114) #31	EIF3G (ENSMMNG00015021125) #32	ENSMMNG00015021153 #33	ENSMMNG00015021161 #34	DNMT1 (ENSMMNG00015021181) #35	S1PR2 (ENSMMNG00015021200) #36	MRPL4 (ENSMMNG00015021211) #37
Beluga whale	MODERN SPECIES	62	ANGPTL4 (ENSDLEG00000014044) #8	ENSDLEG00000013992	MARCH2 (ENSDLEG00000013953) #10	HNRNPM (ENSDLEG00000013836) #11	PRAM1 (ENSDLEG00000013796) #12	ZNF414 (ENSDLEG00000013766) #13	MYO1F (ENSDLEG00000012681) #14	ADAMTS10 (ENSDLEG00000012334) #15	ACTL9 (ENSDLEG00000012304) #16	ENSDLEG00000012289 #17	ENSDLEG00000012286 #18	ZNF699 (ENSDLEG00000012279) #19	ENSDLEG00000012219 #20	FBXL12 (ENSDLEG00000012204) #21	ENSDLEG00000012198	UBL5 (ENSDLEG00000012177) #22	PIN1 (ENSDLEG00000012167) #23	OLFM2 (ENSDLEG00000012039) #24	COL5A3 (ENSDLEG00000010780) #25	RDH8 (ENSDLEG00000010637) #26	ENSDLEG00000009210 #27	CUNH19orf66 (ENSDLEG00000008954) #28	ANGPTL6 (ENSDLEG00000008894) #29	PPAN (ENSDLEG00000008825) #30	P2RY11 (ENSDLEG00000008792) #31	EIF3G (ENSDLEG00000008729) #32	ENSDLEG00000008705	DNMT1 (ENSDLEG00000008585) #35	S1PR2 (ENSDLEG00000008556) #36	MRPL4 (ENSDLEG00000008517) #37	ICAM1 (ENSDLEG00000008458)
Vaquita	MODERN SPECIES	14	MARCHF2 (ENSPSNG00000013117) #10	HNRNPM (ENSPSNG00000013194) #11	PRAM1 (ENSPSNG00000013286) #12	ZNF414 (ENSPSNG00000013396) #13	MYO1F (ENSPSNG00000013483) #14	ADAMTS10 (ENSPSNG00000014228) #15	NFILZ (ENSPSNG00000014433)	ACTL9 (ENSPSNG00000014452) #16	ENSPSNG00000014500 #17	ENSPSNG00000014650 #18	ZNF699 (ENSPSNG00000015586) #19	ENSPSNG00000015654 #20	ENSPSNG00000015869	OR7D4 (ENSPSNG00000016140)	FBXL12 (ENSPSNG00000016895) #21	UBL5 (ENSPSNG00000017005) #22	PIN1 (ENSPSNG00000017083) #23	OLFM2 (ENSPSNG00000017145) #24	COL5A3 (ENSPSNG00000017300) #25	RDH8 (ENSPSNG00000017891) #26	ENSPSNG00000018199 #27	SHFL (ENSPSNG00000019767) #28	ANGPTL6 (ENSPSNG00000019799) #29	PPAN (ENSPSNG00000019833) #30	P2RY11 (ENSPSNG00000019859) #31	EIF3G (ENSPSNG00000019875) #32	ENSPSNG00000019916	DNMT1 (ENSPSNG00000019956) #35	S1PR2 (ENSPSNG00000019997) #36	MRPL4 (ENSPSNG00000020027) #37	ICAM1 (ENSPSNG00000020091)
Dolphin	MODERN SPECIES	4459																UBL5 (ENSTTRG00000008535) #22	PIN1 (ENSTTRG00000008524) #23	OLFM2 (ENSTTRG00000008480) #24
Sperm whale	DUPLICATION
Sperm whale	MODERN SPECIES		ENSPCTG00005001988	KCNH8 (ENSPCTG00005002008)	ENSPCTG00005002029	EFHB (ENSPCTG00005002045)	RAB5A (ENSPCTG00005002067)	PP2D1 (ENSPCTG00005002090)	KAT2B (ENSPCTG00005002112)	SGO1 (ENSPCTG00005002136)	ZNF385D (ENSPCTG00005002168)	UBE2E2 (ENSPCTG00005002250)	ENSPCTG00005002282	NKIRAS1 (ENSPCTG00005002302)	ENSPCTG00005002311	NR1D2 (ENSPCTG00005002323)	THRB (ENSPCTG00005002356)	ENSPCTG00005002407 #22	ENSPCTG00005002423	RARB (ENSPCTG00005002435)	TOP2B (ENSPCTG00005002467)	NGLY1 (ENSPCTG00005002617)	OXSM (ENSPCTG00005002681)	LRRC3B (ENSPCTG00005002693)	ENSPCTG00005002714	ENSPCTG00005002721	PLCH1 (ENSPCTG00005002793)	ENSPCTG00005002938	C1H3orf33 (ENSPCTG00005002945)	SLC33A1 (ENSPCTG00005002962)	GMPS (ENSPCTG00005003000)	ENSPCTG00005003035	ENSPCTG00005003068
Sperm whale	MODERN SPECIES	196															FBXL12 (ENSPCTG00005020337) #21	ENSPCTG00005020289 #22	PIN1 (ENSPCTG00005020244) #23	OLFM2 (ENSPCTG00005020175) #24
Blue whale	MODERN SPECIES	14	ZNF414 (ENSBMSG00010013078) #13	MYO1F (ENSBMSG00010012965) #14	ADAMTS10 (ENSBMSG00010012896) #15	ACTL9 (ENSBMSG00010012871) #16	ENSBMSG00010012848 #17	ENSBMSG00010012830 #18	ZNF699 (ENSBMSG00010012815) #19	ZNF177 (ENSBMSG00010012776) #20	ENSBMSG00010012749	ENSBMSG00010012734	ENSBMSG00010012724	ENSBMSG00010012720	ENSBMSG00010012697	ENSBMSG00010012686	FBXL12 (ENSBMSG00010012661) #21	UBL5 (ENSBMSG00010012647) #22	PIN1 (ENSBMSG00010012624) #23	OLFM2 (ENSBMSG00010012599) #24	COL5A3 (ENSBMSG00010012500) #25	RDH8 (ENSBMSG00010012443) #26	ENSBMSG00010012109 #27	SHFL (ENSBMSG00010011987) #28	ANGPTL6 (ENSBMSG00010011973) #29	PPAN (ENSBMSG00010011939) #30	P2RY11 (ENSBMSG00010011933) #31	EIF3G (ENSBMSG00010011917) #32	DNMT1 (ENSBMSG00010011892) #35	S1PR2 (ENSBMSG00010011881) #36	MRPL4 (ENSBMSG00010011859) #37	ICAM1 (ENSBMSG00010011829)	ICAM4 (ENSBMSG00010011803)
Pecora	ANCESTRAL SPECIES		ENSGT00940000154619.g.b.a.b.a	ENSGT00940000154619.g.b.a.a.a	ENSGT00950000182890.A.b	ENSGT00940000163154.A.a.a	ENSGT00940000163154.B.e	ENSGT00940000153582.b.a.a.b	ENSGT00940000162241	ENSGT00940000163783	ENSGT00940000164306	ENSGT00940000156425.d.a.a.a.a.a #18	ENSGT00940000163210 #19	ENSGT00940000163463 #20	ENSGT00940000163292	ENSGT00940000162380	ENSGT00390000003354 #21	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000155412.b #26	ENSGT00940000164135 #27	ENSGT00390000005065.d #28	ENSGT00940000160969 #29	ENSGT00530000064158 #30	ENSGT01030000234518.C.a.a #31	ENSGT00510000047802 #32	ENSGT00390000005100 #35	ENSGT01050000244887.A.a.a.b #36	ENSGT00390000014512 #37	ENSGT00940000162311.c.a	ENSGT00940000162431
Yarkand deer	DUPLICATION
Yarkand deer	MODERN SPECIES	12	KCND3 (ENSCHYG00000007683)	DDX20 (ENSCHYG00000007715)	INKA2 (ENSCHYG00000007838)	RAP1A (ENSCHYG00000007851)	TMIGD3 (ENSCHYG00000007896)	C1orf162 (ENSCHYG00000007944)	ENSCHYG00000007985	WDR77 (ENSCHYG00000008032)	ENSCHYG00000008093	ENSCHYG00000008237	ENSCHYG00000008388	ENSCHYG00000008426	ENSCHYG00000008629	ENSCHYG00000010693	CHIA (ENSCHYG00000010860)	ENSCHYG00000011001 #22	CHI3L2 (ENSCHYG00000011034)	DENND2D (ENSCHYG00000011291)	CEPT1 (ENSCHYG00000011445)	DRAM2 (ENSCHYG00000011556)	ENSCHYG00000011636	CD53 (ENSCHYG00000011827)	ENSCHYG00000011890	KCNA3 (ENSCHYG00000011946)	KCNA2 (ENSCHYG00000011991)	KCNA10 (ENSCHYG00000012029)	ENSCHYG00000012048	PROK1 (ENSCHYG00000012093)	LAMTOR5 (ENSCHYG00000012127)	SLC16A4 (ENSCHYG00000012250)	RBM15 (ENSCHYG00000012338)
Yarkand deer	MODERN SPECIES	2	OR1L1 (ENSCHYG00000009579)	ENSCHYG00000009562	OR1B1 (ENSCHYG00000009530)	ENSCHYG00000009511	ENSCHYG00000009379	ENSCHYG00000009312	ENSCHYG00000009274	OR1J1 (ENSCHYG00000009250)	ENSCHYG00000009223	ENSCHYG00000009197	ENSCHYG00000009164	ENSCHYG00000018704	ENSCHYG00000018667	ENSCHYG00000018628	ENSCHYG00000018555	ENSCHYG00000018533 #22	PTGS1 (ENSCHYG00000017893)	ENSCHYG00000017724	MRRF (ENSCHYG00000017424)	ENSCHYG00000017363	LHX6 (ENSCHYG00000017135)	MORN5 (ENSCHYG00000017039)	NDUFA8 (ENSCHYG00000016988)	ENSCHYG00000016926	DAB2IP (ENSCHYG00000016211)	ENSCHYG00000016003	ENSCHYG00000015664	ENSCHYG00000015614	CMPK2 (ENSCHYG00000015445)	RSAD2 (ENSCHYG00000015364)	RNF144A (ENSCHYG00000015190)
Yarkand deer	MODERN SPECIES	32	ENSCHYG00000000612	ENSCHYG00000000618	ENSCHYG00000000624	ENSCHYG00000000631 #18	ENSCHYG00000000641	ENSCHYG00000000650 #18	ENSCHYG00000000655 #18	ENSCHYG00000000671	ENSCHYG00000000683 #18	ZNF699 (ENSCHYG00000000751) #19	ZNF177 (ENSCHYG00000000769) #20	ENSCHYG00000000790	ENSCHYG00000000804	ENSCHYG00000000816	FBXL12 (ENSCHYG00000000828) #21	ENSCHYG00000000849 #22	PIN1 (ENSCHYG00000000871) #23	OLFM2 (ENSCHYG00000000890) #24	RDH8 (ENSCHYG00000001045) #26	ENSCHYG00000001067	ENSCHYG00000001157 #27	SHFL (ENSCHYG00000001268) #28	ANGPTL6 (ENSCHYG00000001299) #29	PPAN (ENSCHYG00000001330) #30	EIF3G (ENSCHYG00000001385) #32	DNMT1 (ENSCHYG00000001426) #35	S1PR2 (ENSCHYG00000001459) #36	MRPL4 (ENSCHYG00000001481) #37	ENSCHYG00000001506	ICAM4 (ENSCHYG00000001512)	ICAM5 (ENSCHYG00000001528)
Percora_a	ANCESTRAL SPECIES		ENSGT00940000164306	ENSGT00940000163651.l	ENSGT00940000164510.b	ENSGT00940000164510.a.a.b.a	ENSGT00940000154131	ENSGT00940000164510.a.b.a	ENSGT00940000156425.d.a.a.a.a.a #18	ENSGT00940000156425.d.a.a.b.a #18	ENSGT00940000156425.d.a.a.a.b #18	ENSGT00940000156425.d.a.a.b.b #18	ENSGT00940000163210 #19	ENSGT00940000163463 #20	ENSGT00940000163292	ENSGT00940000162380	ENSGT00390000003354 #21	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000155412.b #26	ENSGT00940000164135 #27	ENSGT00390000005065.d #28	ENSGT00940000160969 #29	ENSGT00530000064158 #30	ENSGT01030000234518.C.a.a #31	ENSGT00510000047802 #32	ENSGT00390000005100 #35	ENSGT01050000244887.A.a.a.b #36	ENSGT00390000014512 #37	ENSGT00940000162311.c.b	ENSGT00940000162311.c.a
Siberian musk deer	MODERN SPECIES	131	ENSMMSG00000004393	ENSMMSG00000004381	ENSMMSG00000004373 #18	ENSMMSG00000004362 #18	ENSMMSG00000004353 #18	ENSMMSG00000004326 #18	ENSMMSG00000004317 #18	ENSMMSG00000004310 #18	ZNF699 (ENSMMSG00000004299) #19	ENSMMSG00000004294	ENSMMSG00000004282	ENSMMSG00000004274	ENSMMSG00000004267	ENSMMSG00000004258 #20	FBXL12 (ENSMMSG00000004245) #21	UBL5 (ENSMMSG00000004232) #22	PIN1 (ENSMMSG00000004218) #23	OLFM2 (ENSMMSG00000004197) #24	COL5A3 (ENSMMSG00000003961) #25	RDH8 (ENSMMSG00000003898) #26	ENSMMSG00000003224 #27	SHFL (ENSMMSG00000003057) #28	ANGPTL6 (ENSMMSG00000003030) #29	PPAN (ENSMMSG00000002995) #30	P2RY11 (ENSMMSG00000002986) #31	EIF3G (ENSMMSG00000002948) #32	DNMT1 (ENSMMSG00000002790) #35	S1PR2 (ENSMMSG00000002764) #36	MRPL4 (ENSMMSG00000002737) #37	ENSMMSG00000002662	ENSMMSG00000002633
Bovidae	ANCESTRAL SPECIES		ENSGT00940000164306	ENSGT00940000164888.b	ENSGT00940000163651.l	ENSGT00940000164510.b	ENSGT00940000164510.a.a.b.a.a	ENSGT00940000154131	ENSGT00940000164510.a.b.a	ENSGT00940000156425.d.a.a.a.a.a #18	ENSGT00940000156425.d.a.a.b.a #18	ENSGT00940000163210 #19	ENSGT00940000163463 #20	ENSGT00940000153165.a.b.a.u	ENSGT00940000162380	ENSGT00940000163292	ENSGT00390000003354 #21	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000155412.b #26	ENSGT00940000164135 #27	ENSGT00390000005065.d #28	ENSGT00940000160969 #29	ENSGT00530000064158 #30	ENSGT01030000234518.C.a.a #31	ENSGT00510000047802 #32	ENSGT00390000005100 #35	ENSGT01050000244887.A.a.a.b #36	ENSGT00390000014512 #37	ENSGT00940000162311.c.b	ENSGT00940000162311.c.a
Caprinae	ANCESTRAL SPECIES	3	ENSGT00940000163945.a	ENSGT00940000154619.g.a.b.a	ENSGT00940000154619.g.b.a.a.a	ENSGT00940000162241	ENSGT00940000163783	ENSGT00940000164306	ENSGT00940000163651.l	ENSGT00940000164510.b	ENSGT00940000164510.a.b.a	ENSGT00940000156425.d.a.a.b.a #18	ENSGT00940000163210 #19	ENSGT00940000163463 #20	ENSGT00940000153165.a.b.a.u	ENSGT00940000162380	ENSGT00390000003354 #21	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000155412.b #26	ENSGT00940000164135 #27	ENSGT00390000005065.d #28	ENSGT00940000160969 #29	ENSGT00530000064158 #30	ENSGT01030000234518.C.a.a #31	ENSGT00510000047802 #32	ENSGT00390000005100 #35	ENSGT01050000244887.A.a.a.b #36	ENSGT00390000014512 #37	ENSGT00940000162311.c.a	ENSGT00940000162431
Rambouillet Sheep	MODERN SPECIES	21	ENSOARG00020000501	ENSOARG00020000513	ENSOARG00020000555	ZNF317 (ENSOARG00020000578)	ENSOARG00020000630	OR7D2 (ENSOARG00020000640)	ENSOARG00020000655	ENSOARG00020000670	ENSOARG00020000678	ENSOARG00020000688	ENSOARG00020000705	ENSOARG00020000708	ENSOARG00020000730 #18	ZNF699 (ENSOARG00020000751) #19	FBXL12 (ENSOARG00020000845) #21	UBL5 (ENSOARG00020000869) #22	PIN1 (ENSOARG00020000893) #23	OLFM2 (ENSOARG00020000916) #24	COL5A3 (ENSOARG00020001143) #25	RDH8 (ENSOARG00020002133) #26	ENSOARG00020002281 #27	SHFL (ENSOARG00020003046) ##28	ENSOARG00020003136 #29	PPAN (ENSOARG00020003235) #30	ENSOARG00020003511	ENSOARG00020003518	ENSOARG00020003533	ENSOARG00020003548 ##28	ENSOARG00020003602 #29	EIF3G (ENSOARG00020003676) #32	DNMT1 (ENSOARG00020003738) #35
Bovinae	ANCESTRAL SPECIES	2	ENSGT01030000234623.a.a.a.a.b.p	ENSGT00940000164510.a.b.b	ENSGT00940000156425.d.a.b #18	ENSGT00940000156425.d.a.a.a.a.b #18	ENSGT00940000156425.d.b #18	ENSGT00940000156425.d.a.a.a.b #18	ENSGT00940000156425.d.a.a.b.a #18	ENSGT00940000156425.d.a.a.a.a.a #18	ENSGT00940000156425.d.a.a.b.b #18	ENSGT00940000163210 #19	ENSGT00940000163463 #20	ENSGT00940000153165.a.b.a.u	ENSGT00940000162380	ENSGT00940000163292	ENSGT00390000003354 #21	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000155412.b #26	ENSGT00940000164135 #27	ENSGT00390000005065.d #28	ENSGT00940000160969 #29	ENSGT00530000064158 #30	ENSGT01030000234518.C.a.a #31	ENSGT00510000047802 #32	ENSGT00390000005100 #35	ENSGT01050000244887.A.a.a.b #36	ENSGT00390000014512 #37	ENSGT00940000162311.c.b	ENSGT00940000162311.c.a
American bison	DUPLICATION
American bison	MODERN SPECIES	3349	OXTR (ENSBBBG00000014600)	RAD18 (ENSBBBG00000014638)	SRGAP3 (ENSBBBG00000014747)	ENSBBBG00000014775	ENSBBBG00000014779	ENSBBBG00000008911	ENSBBBG00000007134 #18	ENSBBBG00000003641 #18	ENSBBBG00000014797 #18	ENSBBBG00000014809 #18	ENSBBBG00000002816 #18	ENSBBBG00000014850 #18	ZNF177 (ENSBBBG00000002804) #20	ENSBBBG00000001106	FBXL12 (ENSBBBG00000001083) #21	UBL5 (ENSBBBG00000001060) #22	PIN1 (ENSBBBG00000001029) #23	OLFM2 (ENSBBBG00000001003) #24	COL5A3 (ENSBBBG00000000880) #25	RDH8 (ENSBBBG00000000860) #26	ENSBBBG00000003785 #27	SHFL (ENSBBBG00000015312) #28	ANGPTL6 (ENSBBBG00000001396) #29	PPAN (ENSBBBG00000001358) #30	P2RY11 (ENSBBBG00000001353) #31	EIF3G (ENSBBBG00000001326) #32	DNMT1 (ENSBBBG00000003484) #35	S1PR2 (ENSBBBG00000015343) #36	MRPL4 (ENSBBBG00000015394) #37	ICAM1 (ENSBBBG00000015412)	ICAM4 (ENSBBBG00000003843)
American bison	MODERN SPECIES	3109	CYBRD1 (ENSBBBG00000005056)	ENSBBBG00000005051	ENSBBBG00000019334	ENSBBBG00000009175	DYNC1I2 (ENSBBBG00000019323)	SLC25A12 (ENSBBBG00000019135)	HAT1 (ENSBBBG00000009158)	METAP1D (ENSBBBG00000019106)	DLX1 (ENSBBBG00000019095)	DLX2 (ENSBBBG00000019086)	ITGA6 (ENSBBBG00000004869)	PDK1 (ENSBBBG00000018765)	RAPGEF4 (ENSBBBG00000018704)	MAP3K20 (ENSBBBG00000018360)	CDCA7 (ENSBBBG00000018271)	ENSBBBG00000018261 #22
Bos	ANCESTRAL SPECIES	3	ENSGT01030000234623.a.a.a.a.b.p	ENSGT00940000164510.a.b.b	ENSGT00940000156425.d.a.a.a.a.a.b #18	ENSGT00940000156425.d.a.b #18	ENSGT00940000156425.d.a.a.a.a.b #18	ENSGT00940000156425.d.b #18	ENSGT00940000156425.d.a.a.a.b #18	ENSGT00940000156425.d.a.a.b.a #18	ENSGT00940000156425.d.a.a.b.b #18	ENSGT00940000163210 #19	ENSGT00940000163463 #20	ENSGT00940000153165.a.b.a.u	ENSGT00940000162380	ENSGT00940000163292	ENSGT00390000003354 #21	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000155412.b #26	ENSGT00940000164135 #27	ENSGT00390000005065.d #28	ENSGT00940000160969 #29	ENSGT00530000064158 #30	ENSGT01030000234518.C.a.a #31	ENSGT00510000047802.p #32	ENSGT00390000005100 #35	ENSGT01050000244887.A.a.a.b #36	ENSGT00390000014512 #37	ENSGT00940000162311.c.b	ENSGT00940000162311.c.a
Bos_a	ANCESTRAL SPECIES	2		ENSGT00940000154131	ENSGT00940000164510.a.b.a	ENSGT00940000156425.d.a.a.a.a.a.b #18	ENSGT00940000156425.d.a.b #18	ENSGT00940000156425.d.a.a.a.a.b #18	ENSGT00940000156425.d.a.a.a.b #18	ENSGT00940000156425.d.a.a.b.a #18	ENSGT00940000156425.d.a.a.b.b #18	ENSGT00940000163210 #19	ENSGT00940000163463 #20	ENSGT00940000153165.a.b.a.u	ENSGT00940000162380	ENSGT00940000163292	ENSGT00390000003354 #21	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000155412.b #26	ENSGT00940000164135 #27	ENSGT00390000005065.d #28	ENSGT00940000160969 #29	ENSGT00530000064158 #30	ENSGT01030000234518.C.a.a #31	ENSGT00510000047802.p #32	ENSGT00390000005100 #35	ENSGT01050000244887.A.a.a.b #36	ENSGT00390000014512 #37	ENSGT00940000162311.c.a	ENSGT00940000162431
Domestic yak	DUPLICATION
Domestic yak	MODERN SPECIES	11	ENSBGRG00000009482	ENSBGRG00000009517	DYNC1I2 (ENSBGRG00000009556)	SLC25A12 (ENSBGRG00000009957)	HAT1 (ENSBGRG00000010265)	METAP1D (ENSBGRG00000010401)	DLX1 (ENSBGRG00000010658)	DLX2 (ENSBGRG00000010765)	ITGA6 (ENSBGRG00000010970)	ENSBGRG00000011777	PDK1 (ENSBGRG00000011803)	RAPGEF4 (ENSBGRG00000012108)	MAP3K20 (ENSBGRG00000013013)	CDCA7 (ENSBGRG00000013198)	ENSBGRG00000013492	ENSBGRG00000013535 #22	SP3 (ENSBGRG00000013570)	ENSBGRG00000013676	ENSBGRG00000013728	SP9 (ENSBGRG00000014139)	CIR1 (ENSBGRG00000014162)	SCRN3 (ENSBGRG00000014271)	GPR155 (ENSBGRG00000014360)	ENSBGRG00000014674	ENSBGRG00000014699	CHRNA1 (ENSBGRG00000014839)	CHN1 (ENSBGRG00000015101)	ATF2 (ENSBGRG00000015648)	ATP5MC3 (ENSBGRG00000016024)	ENSBGRG00000016132	LNPK (ENSBGRG00000016182)
Domestic yak	MODERN SPECIES	27	ENSBGRG00000001282	ENSBGRG00000001285	ENSBGRG00000001294	ENSBGRG00000001311	ENSBGRG00000001319 #18	ENSBGRG00000001325 #18	ENSBGRG00000001334 #18	ENSBGRG00000001371 #18	ENSBGRG00000001386 #18	ZNF699 (ENSBGRG00000001399) #19	ZNF177 (ENSBGRG00000001426) #20	ENSBGRG00000001454	ENSBGRG00000001463	ENSBGRG00000001489	FBXL12 (ENSBGRG00000001506) #21	ENSBGRG00000001526 #22	PIN1 (ENSBGRG00000001548) #23	OLFM2 (ENSBGRG00000001600) #24	COL5A3 (ENSBGRG00000001716) #25	RDH8 (ENSBGRG00000001767) #26	SHFL (ENSBGRG00000002101) ##28	ANGPTL6 (ENSBGRG00000002157) #29	PPAN (ENSBGRG00000002190) #30	P2RY11 (ENSBGRG00000002275) #31	EIF3G (ENSBGRG00000002308) #32	DNMT1 (ENSBGRG00000002388) #35	S1PR2 (ENSBGRG00000002416) #36	MRPL4 (ENSBGRG00000002458) #37	ENSBGRG00000002625	ICAM4 (ENSBGRG00000002716)	ICAM5 (ENSBGRG00000002740)
Wild yak	DUPLICATION
Wild yak	MODERN SPECIES	2505																ENSBMUG00000026586 #22
Wild yak	MODERN SPECIES	2786																ENSBMUG00000021710 #22	PIN1 (ENSBMUG00000021698) #23	OLFM2 (ENSBMUG00000021685) #24	COL5A3 (ENSBMUG00000021640) #25	RDH8 (ENSBMUG00000021585) #26	ENSBMUG00000021441 #27	SHFL (ENSBMUG00000021026) #28	ANGPTL6 (ENSBMUG00000020986) #29	PPAN (ENSBMUG00000020960) #30	P2RY11 (ENSBMUG00000020941) #31	EIF3G (ENSBMUG00000020932) #32	DNMT1 (ENSBMUG00000020870) #35	S1PR2 (ENSBMUG00000020784) #36	MRPL4 (ENSBMUG00000020770) #37	ENSBMUG00000020740
Bos_b	ANCESTRAL SPECIES	2	ENSGT00940000164510.a.b.b	ENSGT00940000156425.d.a.a.a.a.a.b #18	ENSGT00940000156425.d.a.b #18	ENSGT00940000156425.d.a.a.a.a.b #18	ENSGT00940000156425.d.b #18	ENSGT00940000156425.d.a.a.a.a.a.a.a #18	ENSGT00940000156425.d.a.a.a.b #18	ENSGT00940000156425.d.a.a.b.a #18	ENSGT00940000156425.d.a.a.b.b #18	ENSGT00940000163210 #19	ENSGT00940000153165.a.b.a.u	ENSGT00940000162380	ENSGT00940000163292	ENSGT00940000163463 #20	ENSGT00390000003354 #21	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000155412.b #26	ENSGT00940000164135 #27	ENSGT00390000005065.d #28	ENSGT00940000160969 #29	ENSGT00530000064158 #30	ENSGT01030000234518.C.a.a #31	ENSGT00510000047802.p #32	ENSGT00390000005100 #35	ENSGT01050000244887.A.a.a.b #36	ENSGT00390000014512 #37	ENSGT00950000185283	ENSGT00940000162311.d
Cow	DUPLICATION
Cow	MODERN SPECIES	11	DCAF17 (ENSBTAG00000007683)	ENSBTAG00000053081	CYBRD1 (ENSBTAG00000007898)	ENSBTAG00000048244	DYNC1I2 (ENSBTAG00000002646)	SLC25A12 (ENSBTAG00000016762)	HAT1 (ENSBTAG00000010118)	METAP1D (ENSBTAG00000019075)	DLX1 (ENSBTAG00000015217)	DLX2 (ENSBTAG00000005741)	ITGA6 (ENSBTAG00000017266)	PDK1 (ENSBTAG00000016836)	RAPGEF4 (ENSBTAG00000020984)	MAP3K20 (ENSBTAG00000001083)	CDCA7 (ENSBTAG00000003458)	ENSBTAG00000050579 #22	SP3 (ENSBTAG00000000176)	ENSBTAG00000053359	OLA1 (ENSBTAG00000006970)	ENSBTAG00000052569	SP9 (ENSBTAG00000014949)	CIR1 (ENSBTAG00000038620)	SCRN3 (ENSBTAG00000012966)	GPR155 (ENSBTAG00000021636)	WIPF1 (ENSBTAG00000001585)	CHRNA1 (ENSBTAG00000018253)	CHN1 (ENSBTAG00000008028)	ATF2 (ENSBTAG00000002295)	ATP5MC3 (ENSBTAG00000002944)	ENSBTAG00000031711	LNPK (ENSBTAG00000018061)
Cow	MODERN SPECIES		HLCS (ENSBTAG00000033679)	RIPPLY3 (ENSBTAG00000051916)	PIGP (ENSBTAG00000055107)	TTC3 (ENSBTAG00000008167)	VPS26C (ENSBTAG00000004791)	DYRK1A (ENSBTAG00000001771)	KCNJ6 (ENSBTAG00000037616)	KCNJ15 (ENSBTAG00000000973)	ERG (ENSBTAG00000011001)	ETS2 (ENSBTAG00000009214)	PIK3R4 (ENSBTAG00000020787)	COL6A6 (ENSBTAG00000012837)	COL6A5 (ENSBTAG00000049122)	CAPN7 (ENSBTAG00000006479)	SH3BP5 (ENSBTAG00000023377)	ENSBTAG00000030592 #22	METTL6 (ENSBTAG00000023375)	EAF1 (ENSBTAG00000019202)	COLQ (ENSBTAG00000051541)	COLQ (ENSBTAG00000040193)	HACL1 (ENSBTAG00000003718)	BTD (ENSBTAG00000019129)	ANKRD28 (ENSBTAG00000024815)	GALNT15 (ENSBTAG00000008240)	ENSBTAG00000051065	DPH3 (ENSBTAG00000003916)	ENSBTAG00000053091	OXNAD1 (ENSBTAG00000004891)	RFTN1 (ENSBTAG00000030593)	ENSBTAG00000051752	DAZL (ENSBTAG00000000502)
Cow	MODERN SPECIES	26	OR7E202 (ENSBTAG00000040482)	ENSBTAG00000054866 #18	OR7E191P (ENSBTAG00000051507) #18	ENSBTAG00000004369 #18	ENSBTAG00000053212 #18	OR7E184P (ENSBTAG00000054276) #18	OR7E188 (ENSBTAG00000047799) #18	ENSBTAG00000050203 #18	ENSBTAG00000046139 #18	ENSBTAG00000047414 #18	ZNF177 (ENSBTAG00000050244) #20	ENSBTAG00000025146	ZNF266 (ENSBTAG00000049881)	ENSBTAG00000035777 #20	FBXL12 (ENSBTAG00000025148) #21	UBL5 (ENSBTAG00000049452) #22	PIN1 (ENSBTAG00000016988) #23	OLFM2 (ENSBTAG00000007550) #24	COL5A3 (ENSBTAG00000010179) #25	RDH8 (ENSBTAG00000010188) #26	ENSBTAG00000015557 #27	SHFL (ENSBTAG00000015636) ##28	ANGPTL6 (ENSBTAG00000039302) #29	PPAN (ENSBTAG00000012745) #30	P2RY11 (ENSBTAG00000013536) #31	EIF3G (ENSBTAG00000002734) #32	DNMT1 (ENSBTAG00000002736) #35	S1PR2 (ENSBTAG00000002738) #36	MRPL4 (ENSBTAG00000001419)	ENSBTAG00000053933	ENSBTAG00000049560
Hybrid Bos Indicus	DUPLICATION
Hybrid Bos Indicus	MODERN SPECIES	11	ENSBIXG00005004610	CYBRD1 (ENSBIXG00005026983)	DYNC1I2 (ENSBIXG00005027153)	SLC25A12 (ENSBIXG00005027277)	ENSBIXG00005027305	HAT1 (ENSBIXG00005005621)	DLX1 (ENSBIXG00005006946)	DLX2 (ENSBIXG00005027459)	ENSBIXG00005027485	ENSBIXG00005027496	ITGA6 (ENSBIXG00005027649)	PDK1 (ENSBIXG00005006953)	RAPGEF4 (ENSBIXG00005028149)	MAP3K20 (ENSBIXG00005028315)	CDCA7 (ENSBIXG00005028490)	ENSBIXG00005028515 #22	SP3 (ENSBIXG00005005344)	ENSBIXG00005004930	OLA1 (ENSBIXG00005028684)	ENSBIXG00005004969	SP9 (ENSBIXG00005002344)	CIR1 (ENSBIXG00005005349)	SCRN3 (ENSBIXG00005028812)	GPR155 (ENSBIXG00005028873)	ENSBIXG00005002196	CHRNA1 (ENSBIXG00005028981)	CHN1 (ENSBIXG00005001962)	ATF2 (ENSBIXG00005001719)	ATP5MC3 (ENSBIXG00005029222)	ENSBIXG00005029239	LNPK (ENSBIXG00005005282)
Hybrid Bos Indicus	MODERN SPECIES	26	OR7G1 (ENSBIXG00005024892)	ENSBIXG00005024899	ENSBIXG00005024908	ENSBIXG00005024944	ENSBIXG00005007397 #18	ENSBIXG00005006684 #18	ENSBIXG00005024990 #18	ENSBIXG00005025112 #18	ENSBIXG00005025131 #18	ENSBIXG00005004278 #19	ZNF177 (ENSBIXG00005025181) #20	ENSBIXG00005004287	ENSBIXG00005006857	ENSBIXG00005006524	FBXL12 (ENSBIXG00005025351) #21	ENSBIXG00005004319 #22	PIN1 (ENSBIXG00005025457) #23	OLFM2 (ENSBIXG00005004339) #24	COL5A3 (ENSBIXG00005025683) #25	RDH8 (ENSBIXG00005025738) #26	ENSBIXG00005025866 #27	SHFL (ENSBIXG00005025958) #28	ANGPTL6 (ENSBIXG00005026015) #29	PPAN (ENSBIXG00005026042) #30	P2RY11 (ENSBIXG00005007635) #31	EIF3G (ENSBIXG00005026069) #32	DNMT1 (ENSBIXG00005026225) #35	S1PR2 (ENSBIXG00005002546) #36	MRPL4 (ENSBIXG00005026363) #37	ENSBIXG00005026424	ENSBIXG00005026437
Camelidae	ANCESTRAL SPECIES	61															ENSGT00390000003354 #21	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000155412.b #26	ENSGT00940000164135 #27	ENSGT00390000005065.d #28	ENSGT00940000160969 #29	ENSGT00530000064158 #30	ENSGT00510000047802 #32	ENSGT00390000005100 #35	ENSGT01050000244887.A.a.a.b #36	ENSGT00390000014512 #37	ENSGT00940000162311	ENSGT00940000162431	ENSGT00940000162184
Arabian camel	MODERN SPECIES	14	OR7G2 (ENSCDRG00005003764)	ENSCDRG00005003785	ENSCDRG00005003842	ZNF317 (ENSCDRG00005003880)	ENSCDRG00005003940	ENSCDRG00005003955	ZNF177 (ENSCDRG00005004057) #20	ZNF699 (ENSCDRG00005004185) #19	ENSCDRG00005004237 #18	ENSCDRG00005004256 #18	ENSCDRG00005004274	ENSCDRG00005004292	OR7D4 (ENSCDRG00005004314)	ENSCDRG00005004336	FBXL12 (ENSCDRG00005004348) #21	UBL5 (ENSCDRG00005004386) #22	PIN1 (ENSCDRG00005004410) #23	OLFM2 (ENSCDRG00005004459) #24	COL5A3 (ENSCDRG00005004545) #25	RDH8 (ENSCDRG00005004777) #26	ENSCDRG00005004918 #27	SHFL (ENSCDRG00005006144) #28	ANGPTL6 (ENSCDRG00005006190) #29	PPAN (ENSCDRG00005006218) #30	EIF3G (ENSCDRG00005006325) #32	DNMT1 (ENSCDRG00005006428) #35	S1PR2 (ENSCDRG00005006497) #36	MRPL4 (ENSCDRG00005006515) #37	ICAM1 (ENSCDRG00005006651)	ICAM4 (ENSCDRG00005006691)	ICAM5 (ENSCDRG00005006746)