Chordata	ANCESTRAL SPECIES	137																ENSGT00390000001945 #22	ENSGT00960000189235
Vertebrata	ANCESTRAL SPECIES	235															ENSGT00640000091578 #23	ENSGT00390000001945 #22	ENSGT00960000189235
Gnathostomata	ANCESTRAL SPECIES	1099															ENSGT00640000091578 #23	ENSGT00390000001945 #22	ENSGT00960000189235
Euteleostomi	ANCESTRAL SPECIES	506											ENSGT00940000155412.b #26	ENSGT00940000154535.C	ENSGT00940000162394 #25	ENSGT00940000159148 #24	ENSGT00640000091578 #23	ENSGT00390000001945 #22	ENSGT00960000189235
Sarcopterygii	ANCESTRAL SPECIES	1182																ENSGT00390000001945 #22	ENSGT00960000189235
Tetrapoda	ANCESTRAL SPECIES	612																ENSGT00390000001945 #22	ENSGT00960000189235
Amniota	ANCESTRAL SPECIES	31	ENSGT01030000234558.D.b	ENSGT00940000154149.b.b	ENSGT00550000075110	ENSGT00940000159323	ENSGT00940000161246	ENSGT00950000183110.a	ENSGT01050000244941.B.c	ENSGT00940000162643	ENSGT00940000160542	ENSGT00550000075064	ENSGT00390000007919	ENSGT00940000165858	ENSGT00940000164508	ENSGT00390000003354 #21	ENSGT00990000205479	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000154535.C	ENSGT00940000155412.b #26	ENSGT00390000005065 #28	ENSGT00940000160969 #29	ENSGT00530000064158 #30	ENSGT01030000234518.C.a.a #31	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT00940000172524	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000159005
Mammalia	ANCESTRAL SPECIES	42			ENSGT01030000234558.D.b	ENSGT00940000154149.b.b	ENSGT00550000075110	ENSGT00940000159323	ENSGT00940000161246	ENSGT00940000160542	ENSGT00940000162643	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064	ENSGT00390000007919	ENSGT00390000003354 #21	ENSGT00990000205479	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000154535.C	ENSGT00940000155412.b #26	ENSGT00390000005065 #28	ENSGT00940000160969 #29	ENSGT00530000064158 #30	ENSGT01030000234518.C.a.a #31	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT00940000172524	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000159005
Theria	ANCESTRAL SPECIES	29			ENSGT01030000234558.D.b	ENSGT00940000154149.b.b	ENSGT00550000075110	ENSGT00940000159323	ENSGT00940000161246	ENSGT00940000160542	ENSGT00940000162643	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064	ENSGT00390000007919	ENSGT00390000003354 #21	ENSGT00990000205479	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000155412.b #26	ENSGT00940000164135 #27	ENSGT00390000005065 #28	ENSGT00940000160969 #29	ENSGT00530000064158 #30	ENSGT01030000234518.C.a.a #31	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT00940000172524	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162431 #37
Eutheria	ANCESTRAL SPECIES	27	ENSGT00390000016884	ENSGT00550000075140	ENSGT00950000182975.a.b	ENSGT00940000159130	ENSGT00950000183036.b	ENSGT00940000162948	ENSGT00390000014215	ENSGT00390000000427	ENSGT00940000157375	ENSGT00940000154146.b.b.b	ENSGT00940000155404	ENSGT00940000162532	ENSGT00940000162241 #7	ENSGT00390000003354 #21	ENSGT00990000205479	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000155412.b #26	ENSGT00940000164135 #27	ENSGT00390000005065 #28	ENSGT00940000160969 #29	ENSGT00530000064158 #30	ENSGT01030000234518.C.a.a #31	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT00940000172524	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311 #36
Boreoeutheria	ANCESTRAL SPECIES	18	ENSGT00940000164306 #8	ENSGT00940000153686	ENSGT00940000162877 #10	ENSGT00940000156425 #12	ENSGT00940000164510	ENSGT00940000163651 #9	ENSGT00940000153277.A #11	ENSGT00940000163210 #13	ENSGT00940000164004 #14	ENSGT00940000163463 #15	ENSGT00940000162380 #17	ENSGT00940000163292	ENSGT00940000163958 #20	ENSGT00390000003354 #21	ENSGT00990000205479	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000155412.b #26	ENSGT00940000164135 #27	ENSGT00390000005065 #28	ENSGT00940000160969 #29	ENSGT00530000064158 #30	ENSGT01030000234518.C.a.a #31	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT00940000172524	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311 #36
Laurasiatheria	ANCESTRAL SPECIES	15	ENSGT00940000164306 #8	ENSGT00940000153686	ENSGT00940000162877 #10	ENSGT00940000156425 #12	ENSGT00940000164510	ENSGT00940000163651 #9	ENSGT00940000153277.A #11	ENSGT00940000163210 #13	ENSGT00940000164004 #14	ENSGT00940000163463 #15	ENSGT00940000162380 #17	ENSGT00940000163292	ENSGT00940000163958 #20	ENSGT00390000003354 #21	ENSGT00990000205479	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000155412.b #26	ENSGT00940000164135 #27	ENSGT00390000005065 #28	ENSGT00940000160969 #29	ENSGT00530000064158 #30	ENSGT01030000234518.C.a.a #31	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311 #36	ENSGT00940000162431 #37
Laurasiatheria_a	ANCESTRAL SPECIES	19	ENSGT00940000162532	ENSGT00940000162241 #7	ENSGT00940000163783	ENSGT00940000164306 #8	ENSGT00940000153686	ENSGT00940000153277.A #11	ENSGT00940000156425 #12	ENSGT00940000163210 #13	ENSGT00940000164004 #14	ENSGT00940000163463 #15	ENSGT00940000162380 #17	ENSGT00940000163292	ENSGT00940000163958 #20	ENSGT00390000003354 #21	ENSGT00990000205479	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000155412.b #26	ENSGT00940000164135 #27	ENSGT00390000005065.d #28	ENSGT00940000160969 #29	ENSGT00530000064158 #30	ENSGT01030000234518.C.a.a #31	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311 #36	ENSGT00940000162431 #37
Laurasiatheria_b	ANCESTRAL SPECIES	18	ENSGT00940000162241 #7	ENSGT00940000163783	ENSGT00940000164306 #8	ENSGT00940000153686	ENSGT00940000163651 #9	ENSGT00940000164510	ENSGT00940000156425 #12	ENSGT00940000153277.A #11	ENSGT00940000163210 #13	ENSGT00940000164004 #14	ENSGT00940000163463 #15	ENSGT00940000162380 #17	ENSGT00940000163292	ENSGT00940000163958 #20	ENSGT00390000003354 #21	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000155412.b #26	ENSGT00940000164135 #27	ENSGT00390000005065.d #28	ENSGT00940000160969 #29	ENSGT00530000064158 #30	ENSGT01030000234518.C.a.a #31	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311 #36	ENSGT00940000162431 #37
Carnivora	ANCESTRAL SPECIES	6	ENSGT00940000164306 #8	ENSGT00940000153686	ENSGT00940000163651 #9	ENSGT00940000162877.b #10	ENSGT00940000153277.A #11	ENSGT00940000156425 #12	ENSGT00940000163210 #13	ENSGT00940000164004 #14	ENSGT00940000163463 #15	ENSGT00940000162380.s.b ##17	ENSGT00940000163292	ENSGT00940000162380.s.a #17	ENSGT00940000166886 #18	ENSGT00940000163958 #20	ENSGT00390000003354 #21	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000155412.b #26	ENSGT00940000164135 #27	ENSGT00390000005065.d #28	ENSGT00940000160969 #29	ENSGT00530000064158 #30	ENSGT01030000234518.C.a.a #31	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311 #36	ENSGT00940000162431 #37
Caniformia	ANCESTRAL SPECIES	4	ENSGT00940000164306 #8	ENSGT00940000153686	ENSGT00940000163651 #9	ENSGT00940000162877.b #10	ENSGT00940000153277.A #11	ENSGT00940000156425 #12	ENSGT00940000163210 #13	ENSGT00940000164004 #14	ENSGT00940000163463 #15	ENSGT00940000162380.s.b ##17	ENSGT00940000163292	ENSGT00940000162380.s.a #17	ENSGT00940000166886 #18	ENSGT00940000163958 #20	ENSGT00390000003354 #21	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000155412.b #26	ENSGT00940000164135 #27	ENSGT00390000005065.d #28	ENSGT00940000160969 #29	ENSGT00530000064158 #30	ENSGT01030000234518.C.a.a #31	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311 #36	ENSGT00940000162431 #37
Canidae	ANCESTRAL SPECIES		ENSGT00940000154619.g.a.b.b	ENSGT00940000163146	ENSGT00940000162532	ENSGT00940000162241 #7	ENSGT00940000164306 #8	ENSGT00940000153686	ENSGT00940000153277.A #11	ENSGT00940000156425 #12	ENSGT00940000163210 #13	ENSGT00940000164004 #14	ENSGT00940000163463 #15	ENSGT00940000162380.s.a #17	ENSGT00940000166886 #18	ENSGT00940000163958 #20	ENSGT00390000003354 #21	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000155412.b #26	ENSGT00940000164135 #27	ENSGT00390000005065.d #28	ENSGT00940000160969 #29	ENSGT00530000064158 #30	ENSGT01030000234518.C.a.a #31	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311 #36	ENSGT00940000162431 #37
Canis_lupus	ANCESTRAL SPECIES	1	ENSGT00940000163146	ENSGT00940000162532	ENSGT00940000162241 #7	ENSGT00940000164306 #8	ENSGT00940000163651 #9	ENSGT00940000162877.b #10	ENSGT00940000153277.A #11	ENSGT00940000156425 #12	ENSGT00940000163210 #13	ENSGT00940000164004 #14	ENSGT00940000163463 #15	ENSGT00940000162380.s.a #17	ENSGT00940000166886 #18	ENSGT00940000163958 #20	ENSGT00390000003354 #21	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000155412.b #26	ENSGT00940000164135 #27	ENSGT00390000005065.d #28	ENSGT00940000160969 #29	ENSGT00530000064158 #30	ENSGT01030000234518.C.a.a #31	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311 #36	ENSGT00940000162431 #37
Dog	DUPLICATION
Dog	MODERN SPECIES	12	ZNF317 (ENSCAFG00845023848) #7	OR7D2 (ENSCAFG00845023810) #8	ENSCAFG00845023666 #9	OR7E154 (ENSCAFG00845023639) #10	ENSCAFG00845023622 #11	ENSCAFG00845023596 #12	ZNF699 (ENSCAFG00845023440) #13	ENSCAFG00845023376 #14	ZNF177 (ENSCAFG00845023273) #15	ENSCAFG00845023232 #16	ENSCAFG00845023189 #17	OR7D7 (ENSCAFG00845023167) #18	ENSCAFG00845023146 #19	ENSCAFG00845023091 #20	FBXL12 (ENSCAFG00845023009) #21	UBL5 (ENSCAFG00845022930) #22	PIN1 (ENSCAFG00845022850) #23	OLFM2 (ENSCAFG00845022738) #24	COL5A3 (ENSCAFG00845020278) #25	RDH8 (ENSCAFG00845019953) #26	ENSCAFG00845019148 #27	SHFL (ENSCAFG00845018904) #28	ANGPTL6 (ENSCAFG00845018834) #29	PPAN (ENSCAFG00845018657) #30	P2RY11 (ENSCAFG00845018602) #31	EIF3G (ENSCAFG00845018422) #32	DNMT1 (ENSCAFG00845018246) #33	S1PR2 (ENSCAFG00845018161) #34	MRPL4 (ENSCAFG00845028082) #35	ICAM1 (ENSCAFG00845027986) #36	ICAM4 (ENSCAFG00845027954) #37
Dog	MODERN SPECIES	33	PIRT (ENSCAFG00845002937)	SHISA6 (ENSCAFG00845002978)	DNAH9 (ENSCAFG00845003182)	ZNF18 (ENSCAFG00845003462)	ENSCAFG00845003482	MAP2K4 (ENSCAFG00845003515)	ENSCAFG00845003596	MYOCD (ENSCAFG00845003630)	ARHGAP44 (ENSCAFG00845003750)	ELAC2 (ENSCAFG00845003879)	HS3ST3A1 (ENSCAFG00845003985)	ENSCAFG00845004032	COX10 (ENSCAFG00845004049)	ENSCAFG00845004065	HS3ST3B1 (ENSCAFG00845004082)	ENSCAFG00845004106 ##22	ENSCAFG00845004122 ##16	PMP22 (ENSCAFG00845004152)	TEKT3 (ENSCAFG00845004170)	ENSCAFG00845004179	ENSCAFG00845004185	TVP23B (ENSCAFG00845004197)	CDRT1 (ENSCAFG00845004214)	TRIM16 (ENSCAFG00845004235)	ENSCAFG00845004251	ENSCAFG00845004275	ENSCAFG00845004309	ZNF287 (ENSCAFG00845004321)	ENSCAFG00845004343	TRPV2 (ENSCAFG00845004373)	UBB (ENSCAFG00845004386)
Dog	MODERN SPECIES	25	ALPK1 (ENSCAFG00845016654)	ENSCAFG00845016756	NEUROG2 (ENSCAFG00845016784)	ZGRF1 (ENSCAFG00845017018)	LARP7 (ENSCAFG00845017248)	ANK2 (ENSCAFG00845020611)	CAMK2D (ENSCAFG00845028435)	ARSJ (ENSCAFG00845028819)	ENSCAFG00845028859	UGT8 (ENSCAFG00845028928)	ENSCAFG00845029073	NDST4 (ENSCAFG00845029101)	ENSCAFG00845029150	ENSCAFG00845029165	ENSCAFG00845029266	ENSCAFG00845029324 ##22	ENSCAFG00845029353	TRAM1L1 (ENSCAFG00845029459)	NDST3 (ENSCAFG00845029512)	PRSS12 (ENSCAFG00845029625)	ENSCAFG00845029655	METTL14 (ENSCAFG00845029674)	SEC24D (ENSCAFG00845029774)	SYNPO2 (ENSCAFG00845029946)	MYOZ2 (ENSCAFG00845030005)	USP53 (ENSCAFG00845030047)	ENSCAFG00845030125	FABP2 (ENSCAFG00845030144)	PDE5A (ENSCAFG00845030199)	ENSCAFG00845030376
Dingo	DUPLICATION
Dingo	MODERN SPECIES	112	ENSCAFG00020023365	ENSCAFG00020023368	ENSCAFG00020023370	OR7G3 (ENSCAFG00020023372)	ZNF699 (ENSCAFG00020023385) #13	ENSCAFG00020023392	ZNF317 (ENSCAFG00020023398) #7	ENSCAFG00020023399 #9	ENSCAFG00020023403 #10	ENSCAFG00020023406 #11	ENSCAFG00020023409 #15	ENSCAFG00020023417 ##16	ENSCAFG00020023426 #18	ZNF846 (ENSCAFG00020023428) #20	FBXL12 (ENSCAFG00020023431) #21	ENSCAFG00020023435 #22	PIN1 (ENSCAFG00020023438) #23	OLFM2 (ENSCAFG00020023439) #24	RDH8 (ENSCAFG00020023479) #26	ENSCAFG00020023494 #27	SHFL (ENSCAFG00020023617) #28	ANGPTL6 (ENSCAFG00020023619) #29	PPAN (ENSCAFG00020023621) #30	P2RY11 (ENSCAFG00020023626) #31	EIF3G (ENSCAFG00020023628) #32	DNMT1 (ENSCAFG00020023719) #33	S1PR2 (ENSCAFG00020024403) #34	MRPL4 (ENSCAFG00020024405) #35	ICAM1 (ENSCAFG00020024415) #36	ICAM4 (ENSCAFG00020024419) #37	ICAM5 (ENSCAFG00020024426)
Dingo	MODERN SPECIES	373	TMEM220 (ENSCAFG00020001519)	PIRT (ENSCAFG00020001513)	DNAH9 (ENSCAFG00020001198)	ZNF18 (ENSCAFG00020001141)	MAP2K4 (ENSCAFG00020001091)	ENSCAFG00020001071	MYOCD (ENSCAFG00020001034)	ARHGAP44 (ENSCAFG00020000991)	ELAC2 (ENSCAFG00020000574)	HS3ST3A1 (ENSCAFG00020000488)	ENSCAFG00020000477	ENSCAFG00020000457	ENSCAFG00020000429	COX10 (ENSCAFG00020000420)	HS3ST3B1 (ENSCAFG00020000393)	ENSCAFG00020000359 #22	ENSCAFG00020000346 ##16	PMP22 (ENSCAFG00020000339)	TEKT3 (ENSCAFG00020000275)	ENSCAFG00020000255	CDRT4 (ENSCAFG00020000219)	ENSCAFG00020000197	ENSCAFG00020000178	TRIM16 (ENSCAFG00020000123)	ENSCAFG00020000105	ENSCAFG00020021801	ENSCAFG00020021799	ZNF287 (ENSCAFG00020021790)	LRRC75A (ENSCAFG00020021786)	TRPV2 (ENSCAFG00020021744)	ENSCAFG00020021723
Red fox	DUPLICATION
Red fox	MODERN SPECIES	98	ALPK1 (ENSVVUG00000002069)	NDUFA1 (ENSVVUG00000002163)	ENSVVUG00000002176	ENSVVUG00000002181	ZGRF1 (ENSVVUG00000002203)	LARP7 (ENSVVUG00000002274)	ENSVVUG00000002513	ENSVVUG00000005739	CAMK2D (ENSVVUG00000007922)	ARSJ (ENSVVUG00000007950)	UGT8 (ENSVVUG00000007954)	NDST4 (ENSVVUG00000007972)	ENSVVUG00000007981	ENSVVUG00000007997	ENSVVUG00000008001	ENSVVUG00000008039 #22	ENSVVUG00000008040	TRAM1L1 (ENSVVUG00000008075)	NDST3 (ENSVVUG00000008085)	PRSS12 (ENSVVUG00000008117)	ENSVVUG00000008123	METTL14 (ENSVVUG00000008131)	SEC24D (ENSVVUG00000008158)	SYNPO2 (ENSVVUG00000008167)	MYOZ2 (ENSVVUG00000008174)	ENSVVUG00000008185	USP53 (ENSVVUG00000008187)	C4orf3 (ENSVVUG00000008204)	FABP2 (ENSVVUG00000008206)	PDE5A (ENSVVUG00000008217)
Red fox	DUPLICATION
Red fox	MODERN SPECIES	212	ENSVVUG00000028279	ENSVVUG00000028281	ENSVVUG00000028283	ENSVVUG00000028284 #10	ZNF699 (ENSVVUG00000028285) #13	ENSVVUG00000028286	ZNF317 (ENSVVUG00000028287) #7	OR7D2 (ENSVVUG00000028289) #8	OR7D4 (ENSVVUG00000028290)	ENSVVUG00000028291 #11	ENSVVUG00000028292 #12	ZNF177 (ENSVVUG00000028293) #15	ENSVVUG00000028294 #17	ZNF846 (ENSVVUG00000028295) #20	FBXL12 (ENSVVUG00000028296) #21	ENSVVUG00000028298 #22	OLFM2 (ENSVVUG00000028299) #24	RDH8 (ENSVVUG00000028302) #26	ENSVVUG00000028304 #27	SHFL (ENSVVUG00000028305) #28	ANGPTL6 (ENSVVUG00000028307) #29	PPAN (ENSVVUG00000028309) #30	P2RY11 (ENSVVUG00000028314) #31	EIF3G (ENSVVUG00000028316) #32	DNMT1 (ENSVVUG00000028391) #33	S1PR2 (ENSVVUG00000028959) #34	MRPL4 (ENSVVUG00000028961) #35	ICAM1 (ENSVVUG00000028964) #36	ICAM4 (ENSVVUG00000028966) #37	ICAM5 (ENSVVUG00000028968)	ENSVVUG00000028971
Red fox	MODERN SPECIES	52	ENSVVUG00000030041	ENSVVUG00000030040	ENSVVUG00000030039	SLC47A2 (ENSVVUG00000030033)	ALDH3A1 (ENSVVUG00000030028)	ULK2 (ENSVVUG00000030016)	AKAP10 (ENSVVUG00000030013)	ENSVVUG00000030012	SPECC1 (ENSVVUG00000030010)	ADORA2B (ENSVVUG00000030008)	ZSWIM7 (ENSVVUG00000030007)	TTC19 (ENSVVUG00000030006)	NCOR1 (ENSVVUG00000029999)	PIGL (ENSVVUG00000029991)	ENSVVUG00000029989	ENSVVUG00000029987 #22	UBB (ENSVVUG00000029985)	TRPV2 (ENSVVUG00000029983)	LRRC75A (ENSVVUG00000029979)	ZNF287 (ENSVVUG00000029977)	ZNF624 (ENSVVUG00000029975)	ZNF286A (ENSVVUG00000029972)	ENSVVUG00000029970	UCHL1 (ENSVVUG00000029968)	TRIM16 (ENSVVUG00000029965)	ENSVVUG00000029961	CDRT1 (ENSVVUG00000029954)	ENSVVUG00000029948	ENSVVUG00000029946	ENSVVUG00000029943	TEKT3 (ENSVVUG00000029938)
Caniformia_b	ANCESTRAL SPECIES	23	ENSGT00940000163783	ENSGT00940000164306 #8	ENSGT00940000153686	ENSGT00940000163651 #9	ENSGT00940000153277.A #11	ENSGT00940000156425 #12	ENSGT00940000163210 #13	ENSGT00940000164004 #14	ENSGT00940000163463 #15	ENSGT00940000162380.s.b ##17	ENSGT00940000163292	ENSGT00940000162380.s.a #17	ENSGT00940000166886 #18	ENSGT00940000163958 #20	ENSGT00390000003354 #21	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000155412.b #26	ENSGT00940000164135 #27	ENSGT00390000005065.d #28	ENSGT00940000160969 #29	ENSGT00530000064158 #30	ENSGT01030000234518.C.a.a #31	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311 #36	ENSGT00940000162431 #37
Mustelinae	ANCESTRAL SPECIES	45							ENSGT00940000153277.A #11	ENSGT00940000156425 #12	ENSGT00940000163210 #13	ENSGT00940000164004 #14	ENSGT00940000163463 #15	ENSGT00940000162380.s.a #17	ENSGT00940000166886 #18	ENSGT00940000163958 #20	ENSGT00390000003354 #21	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000155412.b #26	ENSGT00940000164135 #27	ENSGT00390000005065.d #28	ENSGT00940000160969 #29	ENSGT00530000064158 #30	ENSGT01030000234518.C.a.a #31	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311 #36	ENSGT00940000162431 #37
American mink	MODERN SPECIES	233							ENSNVIG00000023572 #12	ENSNVIG00000023574 #12	ZNF699 (ENSNVIG00000023577) #13	ENSNVIG00000023581 #14	ZNF177 (ENSNVIG00000023593) #15	ENSNVIG00000023605 #17	ENSNVIG00000023608 #18	ENSNVIG00000023612 #20	FBXL12 (ENSNVIG00000023614) #21	UBL5 (ENSNVIG00000023617) #22	PIN1 (ENSNVIG00000023620) #23	OLFM2 (ENSNVIG00000023625) #24	COL5A3 (ENSNVIG00000023632) #25	RDH8 (ENSNVIG00000023645) #26	ENSNVIG00000023653 #27	SHFL (ENSNVIG00000023728) #28	ANGPTL6 (ENSNVIG00000023730) #29	PPAN (ENSNVIG00000023734) #30	P2RY11 (ENSNVIG00000023744) #31	EIF3G (ENSNVIG00000023747) #32	DNMT1 (ENSNVIG00000023752) #33	S1PR2 (ENSNVIG00000023762) #34	MRPL4 (ENSNVIG00000023765) #35	ICAM1 (ENSNVIG00000023769) #36	ICAM4 (ENSNVIG00000023772) #37
Ursidae	ANCESTRAL SPECIES	20	ENSGT00940000163783	ENSGT00940000164306 #8	ENSGT00940000153686	ENSGT00940000163651 #9	ENSGT00940000153277.A #11	ENSGT00940000156425 #12	ENSGT00940000163210 #13	ENSGT00940000164004 #14	ENSGT00940000163463 #15	ENSGT00940000162380.s.b ##17	ENSGT00940000163292	ENSGT00940000162380.s.a #17	ENSGT00940000166886 #18	ENSGT00940000163958 #20	ENSGT00390000003354 #21	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000155412.b #26	ENSGT00940000164135 #27	ENSGT00390000005065.d #28	ENSGT00940000160969 #29	ENSGT00530000064158 #30	ENSGT01030000234518.C.a.a #31	ENSGT00510000047802.n #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311 #36	ENSGT00940000162431 #37
Giant Panda	MODERN SPECIES	14	ENSAMEG00000029012 #7	ENSAMEG00000025705	ENSAMEG00000025440 #8	ENSAMEG00000026692	ENSAMEG00000018477 #12	ENSAMEG00000019394 #11	ENSAMEG00000001212 #13	ENSAMEG00000030389 #14	ZNF177 (ENSAMEG00000001219) #15	ENSAMEG00000029434 ##17	ENSAMEG00000001221	ENSAMEG00000031145 #17	ENSAMEG00000019684 #18	ZNF846 (ENSAMEG00000029737) #20	ENSAMEG00000030561 #21	UBL5 (ENSAMEG00000012371) #22	PIN1 (ENSAMEG00000012355) #23	ENSAMEG00000012343 #24	ENSAMEG00000024157 #24	RDH8 (ENSAMEG00000012151) #26	ENSAMEG00000012033 #27	SHFL (ENSAMEG00000012021) #28	ANGPTL6 (ENSAMEG00000012016) #29	P2RY11 (ENSAMEG00000019674) #31	EIF3G (ENSAMEG00000011963) #32	DNMT1 (ENSAMEG00000011823) #33	S1PR2 (ENSAMEG00000019659) #34	MRPL4 (ENSAMEG00000011808) #35	ICAM1 (ENSAMEG00000011805) #36	ICAM4 (ENSAMEG00000011803) #37	ICAM5 (ENSAMEG00000011775)
Ursus	ANCESTRAL SPECIES	93															ENSGT00390000003354 #21	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000155412.b #26	ENSGT00940000164135 #27	ENSGT00390000005065.c.b ##28	ENSGT00390000005065.d #28	ENSGT00940000160969 #29	ENSGT00530000064158 #30	ENSGT01030000234518.C.a.a #31	ENSGT00510000047802.n #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311 #36
American black bear	MODERN SPECIES	2152														ENSUAMG00000018747	FBXL12 (ENSUAMG00000018746) #21	ENSUAMG00000018745 #22	PIN1 (ENSUAMG00000018744) #23	OLFM2 (ENSUAMG00000018743) #24	COL5A3 (ENSUAMG00000018667) #25	RDH8 (ENSUAMG00000018666) #26	ENSUAMG00000018665 #27
Polar bear	MODERN SPECIES	312															FBXL12 (ENSUMAG00000025134) #21	ENSUMAG00000025133 #22	PIN1 (ENSUMAG00000025132) #23	OLFM2 (ENSUMAG00000025131) #24	COL5A3 (ENSUMAG00000025128) #25	RDH8 (ENSUMAG00000025126) #26	ENSUMAG00000025115 #27	ENSUMAG00000025113 ##28	ENSUMAG00000025112 #29	P2RY11 (ENSUMAG00000025109) #31	EIF3G (ENSUMAG00000025108) #32	DNMT1 (ENSUMAG00000025107) #33	ENSUMAG00000025106 #34	MRPL4 (ENSUMAG00000025105) #35	ENSUMAG00000025104 #36	ENSUMAG00000025103 #36	ICAM5 (ENSUMAG00000025102)
Felidae	ANCESTRAL SPECIES	21	ENSGT00940000164306 #8	ENSGT00940000153686	ENSGT00940000163651 #9	ENSGT00940000162877.b #10	ENSGT00940000153277.A #11	ENSGT00940000156425 #12	ENSGT00940000163210 #13	ENSGT00940000164004 #14	ENSGT00940000163463 #15	ENSGT00940000162380.t ##17	ENSGT00940000162380.s.b ##17	ENSGT00940000162380.s.a #17	ENSGT00940000166886 #18	ENSGT00940000163958 #20	ENSGT00390000003354 #21	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000155412.b #26	ENSGT00390000005065.d #28	ENSGT00940000160969 #29	ENSGT00530000064158 #30	ENSGT01030000234518.C.a.a #31	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311 #36	ENSGT00940000162431 #37	ENSGT00940000162184
Cat	MODERN SPECIES	1	ENSFCAG00000040525	ZNF317 (ENSFCAG00000005824) #7	ENSFCAG00000021912	OR7D2 (ENSFCAG00000044251) #8	OR7D4 (ENSFCAG00000041195)	ENSFCAG00000041127 #9	ENSFCAG00000050278 #12	ZNF699 (ENSFCAG00000040923) #13	ENSFCAG00000042889 #14	ZNF177 (ENSFCAG00000040603) #15	ENSFCAG00000048920 ##17	ENSFCAG00000050711 #17	ENSFCAG00000045297 #18	ENSFCAG00000041740 #20	FBXL12 (ENSFCAG00000044922) #21	UBL5 (ENSFCAG00000009381) #22	PIN1 (ENSFCAG00000009380) #23	OLFM2 (ENSFCAG00000029446) #24	COL5A3 (ENSFCAG00000009383) #25	RDH8 (ENSFCAG00000009384) #26	SHFL (ENSFCAG00000009386) #28	ANGPTL6 (ENSFCAG00000009387) #29	PPAN (ENSFCAG00000009388) #30	P2RY11 (ENSFCAG00000030255) #31	EIF3G (ENSFCAG00000009389) #32	DNMT1 (ENSFCAG00000012246) #33	S1PR2 (ENSFCAG00000013003) #34	MRPL4 (ENSFCAG00000043071) #35	ICAM1 (ENSFCAG00000009431) #36	ICAM4 (ENSFCAG00000009432) #37	ICAM5 (ENSFCAG00000009433)
Panthera	ANCESTRAL SPECIES	15	ENSGT00940000163146	ENSGT00940000162532	ENSGT00940000162241 #7	ENSGT00940000163783	ENSGT00940000164306 #8	ENSGT00940000153686	ENSGT00940000162877.b #10	ENSGT00940000153277.A #11	ENSGT00940000156425 #12	ENSGT00940000163210 #13	ENSGT00940000164004 #14	ENSGT00940000163463 #15	ENSGT00940000162380.t.b ##17	ENSGT00940000162380.t.a ##17	ENSGT00390000003354 #21	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000155412.b #26	ENSGT00390000005065.d #28	ENSGT00940000160969 #29	ENSGT00530000064158 #30	ENSGT01030000234518.C.a.a #31	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311 #36	ENSGT00940000162431 #37	ENSGT00940000162184	ENSGT00470000042444
Tiger	MODERN SPECIES	129	ZNF317 (ENSPTIG00000016461) #7	ENSPTIG00000008027	OR7D2 (ENSPTIG00000008021) #8	OR7D4 (ENSPTIG00000008019)	ENSPTIG00000008015 ##11	ENSPTIG00000016448 #10	ENSPTIG00000016434 #11	ENSPTIG00000016428 #12	ZNF699 (ENSPTIG00000016414) #13	ENSPTIG00000016402 #14	ZNF177 (ENSPTIG00000016395) #15	ENSPTIG00000016390 ##17	ENSPTIG00000008010 #18	ENSPTIG00000016382 ##17	FBXL12 (ENSPTIG00000016362) #21	UBL5 (ENSPTIG00000016347) #22	PIN1 (ENSPTIG00000016328) #23	OLFM2 (ENSPTIG00000016320) #24	RDH8 (ENSPTIG00000016259) #26	SHFL (ENSPTIG00000016094) #28	ANGPTL6 (ENSPTIG00000015982) #29	PPAN (ENSPTIG00000015960) #30	EIF3G (ENSPTIG00000015950) #32	DNMT1 (ENSPTIG00000015548) #33
Panthera_a	ANCESTRAL SPECIES		ENSGT00940000163146	ENSGT00940000162532	ENSGT00940000162241 #7	ENSGT00940000163783	ENSGT00940000164306 #8	ENSGT00940000153686	ENSGT00940000162877.b #10	ENSGT00940000153277.A #11	ENSGT00940000156425 #12	ENSGT00940000163210 #13	ENSGT00940000164004 #14	ENSGT00940000163463 #15	ENSGT00940000162380.t.b ##17	ENSGT00940000162380.t.a ##17	ENSGT00390000003354 #21	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000155412.b #26	ENSGT00390000005065.d #28	ENSGT00940000160969 #29	ENSGT00530000064158 #30	ENSGT01030000234518.C.a.a #31	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311 #36	ENSGT00940000162431 #37	ENSGT00940000162184	ENSGT00470000042444
lion	MODERN SPECIES	2	PNPLA6 (ENSPLOG00000002153)	MCOLN1 (ENSPLOG00000002317)	ZNF358 (ENSPLOG00000002344)	ENSPLOG00000002374	PEX11G (ENSPLOG00000002404)	ARHGEF18 (ENSPLOG00000002478)	INSR (ENSPLOG00000002580)	ENSPLOG00000002637	ENSPLOG00000002672 #12	ZNF699 (ENSPLOG00000002685) #13	ENSPLOG00000002705 #14	ZNF177 (ENSPLOG00000002733) #15	ENSPLOG00000002758 ##17	ENSPLOG00000002786 ##17	FBXL12 (ENSPLOG00000002810) #21	UBL5 (ENSPLOG00000002830) #22	PIN1 (ENSPLOG00000002853) #23	OLFM2 (ENSPLOG00000002885) #24	RDH8 (ENSPLOG00000003040) #26	SHFL (ENSPLOG00000003064) #28	ANGPTL6 (ENSPLOG00000003100) #29	PPAN (ENSPLOG00000003131) #30	EIF3G (ENSPLOG00000003189) #32	DNMT1 (ENSPLOG00000003231) #33	S1PR2 (ENSPLOG00000003282) #34	MRPL4 (ENSPLOG00000003305) #35	ICAM1 (ENSPLOG00000003347) #36	ICAM4 (ENSPLOG00000003370) #37	ICAM5 (ENSPLOG00000003385)	ENSPLOG00000003406	FDX2 (ENSPLOG00000003426)
leopard	MODERN SPECIES	110	ZNF317 (ENSPPRG00000014318) #7	ENSPPRG00000016056	OR7D2 (ENSPPRG00000016094) #8	OR7D4 (ENSPPRG00000016110)	ENSPPRG00000020136 #10	ENSPPRG00000016140 #12	ENSPPRG00000023966 #11	ENSPPRG00000016197 #12	ZNF699 (ENSPPRG00000023642) #13	ENSPPRG00000022882 #14	ZNF177 (ENSPPRG00000000109) #15	ENSPPRG00000016292 #18	ENSPPRG00000001053	ENSPPRG00000001494 #20	FBXL12 (ENSPPRG00000002002) #21	UBL5 (ENSPPRG00000003235) #22	PIN1 (ENSPPRG00000003544) #23	ENSPPRG00000003598 #24	ENSPPRG00000004120 #24	RDH8 (ENSPPRG00000008058) #26	SHFL (ENSPPRG00000022038) #28	ANGPTL6 (ENSPPRG00000024345) #29	PPAN (ENSPPRG00000023895) #30	P2RY11 (ENSPPRG00000023599) #31	EIF3G (ENSPPRG00000023494) #32	DNMT1 (ENSPPRG00000003596) #33	S1PR2 (ENSPPRG00000017112) #34	MRPL4 (ENSPPRG00000004312) #35	ICAM1 (ENSPPRG00000005262) #36	ICAM4 (ENSPPRG00000005803) #37	ICAM5 (ENSPPRG00000006799)
Laurasiatheria_c	ANCESTRAL SPECIES	16	ENSGT00940000154619.g.a.b.a	ENSGT00940000154619.g.b	ENSGT00940000154131.c.b	ENSGT00940000163146	ENSGT00940000162241 #7	ENSGT00940000163783	ENSGT00940000164306 #8	ENSGT00940000153686	ENSGT00940000163651 #9	ENSGT00940000153277.A #11	ENSGT00940000156425 #12	ENSGT00940000163210 #13	ENSGT00940000163463 #15	ENSGT00940000163958 #20	ENSGT00390000003354 #21	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000155412.b #26	ENSGT00940000165585	ENSGT00940000164135 #27	ENSGT00390000005065.d #28	ENSGT00940000160969 #29	ENSGT00530000064158 #30	ENSGT01030000234518.C.a.a #31	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311 #36
Equus	ANCESTRAL SPECIES	53	ENSGT00940000162241 #7	ENSGT00940000163783	ENSGT00940000164306 #8	ENSGT00940000153686.m	ENSGT00940000162380.q.a #17	ENSGT00940000153686.n	ENSGT00940000163651 #9	ENSGT00940000153277.A.c.a #11	ENSGT00940000163210 #13	ENSGT00940000163463 #15	ENSGT00940000162380.q.b #17	ENSGT00940000163292	ENSGT00940000162380.r #17	ENSGT00940000166594	ENSGT00390000003354 #21	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000165585	ENSGT00940000164135 #27	ENSGT00390000005065.d #28	ENSGT00940000160969 #29	ENSGT00530000064158 #30	ENSGT01030000234518.C.a.a #31	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311 #36	ENSGT00940000162431 #37
Donkey	MODERN SPECIES	12	ENSEASG00005030414 #15	ENSEASG00005032785	ENSEASG00005028652	ENSEASG00005010626	ENSEASG00005029056	ENSEASG00005037775	ENSEASG00005037600	ENSEASG00005037993	ENSEASG00005037572	ENSEASG00005032529	ENSEASG00005010618	ENSEASG00005010615 #20	ENSEASG00005023756 #17	ENSEASG00005027280	FBXL12 (ENSEASG00005010614) #21	UBL5 (ENSEASG00005010612) #22	ENSEASG00005010611 #23	OLFM2 (ENSEASG00005010608) #24	COL5A3 (ENSEASG00005010596) #25	ENSEASG00005010590	ENSEASG00005010586 #27	SHFL (ENSEASG00005010583) #28	ANGPTL6 (ENSEASG00005025125) #29	PPAN (ENSEASG00005010574) #30	P2RY11 (ENSEASG00005034778) #31	ENSEASG00005010571 #32	DNMT1 (ENSEASG00005010561) #33	S1PR2 (ENSEASG00005026403) #34	MRPL4 (ENSEASG00005010556) #35	ENSEASG00005010553 #36	ICAM4 (ENSEASG00005024479) #37
Chiroptera	ANCESTRAL SPECIES	59													ENSGT00940000163210 #13	ENSGT00940000163958 #20	ENSGT00390000003354 #21	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000155412.b #26	ENSGT00940000165585	ENSGT00940000164135 #27	ENSGT00390000005065.d #28	ENSGT00940000160969 #29	ENSGT00530000064158 #30	ENSGT01030000234518.C.a.a #31	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311 #36
Megabat	MODERN SPECIES	2245														ZNF846 (ENSPVAG00000008625) #20	FBXL12 (ENSPVAG00000008627) #21	UBL5 (ENSPVAG00000008628) #22	PIN1 (ENSPVAG00000008629) #23	ENSPVAG00000008631 #24	COL5A3 (ENSPVAG00000008633) #25	RDH8 (ENSPVAG00000008653) #26
Microchiroptera	ANCESTRAL SPECIES	53													ENSGT00940000163210 #13	ENSGT00940000163958 #20	ENSGT00390000003354 #21	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000165585	ENSGT00940000155412.b #26	ENSGT00940000164135 #27	ENSGT00390000005065.d #28	ENSGT00940000160969 #29	ENSGT00530000064158 #30	ENSGT01030000234518.C.a.a #31	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311 #36
Greater horseshoe bat	MODERN SPECIES	9	PPP2R2A (ENSRFEG00010006444)	BNIP3L (ENSRFEG00010006372)	PNMA2 (ENSRFEG00010006352)	DPYSL2 (ENSRFEG00010006268)	ADRA1A (ENSRFEG00010006218)	OR7D2 (ENSRFEG00010006200) #8	OR7D4 (ENSRFEG00010006172)	ENSRFEG00010006149 #9	ENSRFEG00010006089 #12	ENSRFEG00010006057 #12	ENSRFEG00010006027 #12	ZNF699 (ENSRFEG00010005993) #13	ENSRFEG00010005962 #20	ENSRFEG00010005931 #20	FBXL12 (ENSRFEG00010005897) #21	UBL5 (ENSRFEG00010005864) #22	PIN1 (ENSRFEG00010005812) #23	OLFM2 (ENSRFEG00010005765) #24	RDH8 (ENSRFEG00010005664) #26	ENSRFEG00010005567 #27	SHFL (ENSRFEG00010005394) #28	ANGPTL6 (ENSRFEG00010005369) #29	PPAN (ENSRFEG00010018720) #30	P2RY11 (ENSRFEG00010018700) #31	EIF3G (ENSRFEG00010018651) #32	MRPL4 (ENSRFEG00010017044) #35	ICAM1 (ENSRFEG00010017025) #36	ICAM4 (ENSRFEG00010016957) #37	ICAM5 (ENSRFEG00010016803)	ENSRFEG00010016728	FDX2 (ENSRFEG00010016631)
Microbat	MODERN SPECIES	1472																UBL5 (ENSMLUG00000027369) #22	PIN1 (ENSMLUG00000008553) #23	OLFM2 (ENSMLUG00000008560) #24	ENSMLUG00000012724 #25	ENSMLUG00000030568	ENSMLUG00000014180 #27	SHFL (ENSMLUG00000022228) #28	ANGPTL6 (ENSMLUG00000029782) #29	PPAN (ENSMLUG00000014186) #30	P2RY11 (ENSMLUG00000014192) #31	EIF3G (ENSMLUG00000014196) #32	DNMT1 (ENSMLUG00000001347) #33	S1PR2 (ENSMLUG00000026451) #34	MRPL4 (ENSMLUG00000012280) #35	ICAM1 (ENSMLUG00000012289) #36	ICAM4 (ENSMLUG00000012295) #37
Artiodactyla	ANCESTRAL SPECIES	22	ENSGT00940000154619.g.a.b.a	ENSGT00940000154619.g.a.b.b	ENSGT00940000163945	ENSGT00940000154619.g.b.a.a	ENSGT00940000154619.g.b.a.b	ENSGT00940000163146	ENSGT00940000162241 #7	ENSGT00940000164306 #8	ENSGT00940000163783	ENSGT00940000163210 #13	ENSGT00940000164004 #14	ENSGT00940000163463 #15	ENSGT00940000153165.a.b.a.t.a	ENSGT00390000003354 #21	ENSGT00990000205479	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000155412.b #26	ENSGT00940000164135 #27	ENSGT00390000005065.d #28	ENSGT00940000160969 #29	ENSGT00530000064158 #30	ENSGT01030000234518.C.a.a #31	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311 #36	ENSGT00940000162431 #37
Suina	ANCESTRAL SPECIES	16	ENSGT00940000166764	ENSGT00940000154131.a.b	ENSGT00940000162532	ENSGT00940000154131.a.a	ENSGT00940000154619.g.a.a	ENSGT00940000154131.b	ENSGT00940000154619.g.a.b.b	ENSGT00940000154619.g.b.a.a	ENSGT00940000154619.g.b.a.b	ENSGT00940000163146	ENSGT00940000162241 #7	ENSGT00940000163783	ENSGT00940000164306 #8	ENSGT00940000162380 #17	ENSGT00390000003354 #21	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000155412.b #26	ENSGT00940000164135 #27	ENSGT00390000005065.d #28	ENSGT00940000160969 #29	ENSGT00530000064158 #30	ENSGT01030000234518.C.a.a #31	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311 #36	ENSGT00940000162431 #37
Chacoan peccary	MODERN SPECIES	770	ENSCWAG00000007504	ENSCWAG00000007493	ENSCWAG00000007470	ENSCWAG00000007460	ENSCWAG00000007428	ENSCWAG00000007413	OR7G3 (ENSCWAG00000007400)	ZNF317 (ENSCWAG00000007371) #7	OR7D2 (ENSCWAG00000007354) #8	ENSCWAG00000007337	ENSCWAG00000007322	ENSCWAG00000007311	ENSCWAG00000007302 #18	ENSCWAG00000007266 #17	FBXL12 (ENSCWAG00000007231) #21	UBL5 (ENSCWAG00000007190) #22	PIN1 (ENSCWAG00000007164) #23	OLFM2 (ENSCWAG00000007120) #24	COL5A3 (ENSCWAG00000006862) #25	RDH8 (ENSCWAG00000006746) #26	ENSCWAG00000005053 #27	SHFL (ENSCWAG00000004841) #28	ANGPTL6 (ENSCWAG00000004802) #29	PPAN (ENSCWAG00000004764) #30	P2RY11 (ENSCWAG00000004744) #31	EIF3G (ENSCWAG00000004694) #32	DNMT1 (ENSCWAG00000004600) #33	S1PR2 (ENSCWAG00000004569) #34	MRPL4 (ENSCWAG00000004503) #35	ICAM1 (ENSCWAG00000004470) #36	ICAM4 (ENSCWAG00000004447) #37
Pig	DUPLICATION
Pig	MODERN SPECIES	10	ENSSSCG00000050800 #12	ENSSSCG00000023132 #9	ENSSSCG00000053504	ENSSSCG00000060502	ENSSSCG00000055989	ENSSSCG00000057656	ENSSSCG00000022738	ENSSSCG00000036978	ENSSSCG00000063539	ENSSSCG00000037685	ENSSSCG00000060241	ENSSSCG00000063204 #18	ENSSSCG00000058680	ENSSSCG00000033816	FBXL12 (ENSSSCG00000013670) #21	ENSSSCG00000023331 #22	PIN1 (ENSSSCG00000039619) #23	OLFM2 (ENSSSCG00000027434) #24	COL5A3 (ENSSSCG00000013667) #25	RDH8 (ENSSSCG00000013666) #26	ENSSSCG00000013665 #27	SHFL (ENSSSCG00000013664) #28	ANGPTL6 (ENSSSCG00000013663) #29	PPAN (ENSSSCG00000013662) #30	P2RY11 (ENSSSCG00000024072) #31	EIF3G (ENSSSCG00000013661) #32	DNMT1 (ENSSSCG00000013659) #33	S1PR2 (ENSSSCG00000013658) #34	MRPL4 (ENSSSCG00000013656) #35	ICAM1 (ENSSSCG00000013655) #36	ICAM4 (ENSSSCG00000013654) #37
Pig	MODERN SPECIES	7	CDC20B (ENSSSCG00000048484)	GZMA (ENSSSCG00000016903)	GZMA (ENSSSCG00000016902)	GZMK (ENSSSCG00000016901)	ESM1 (ENSSSCG00000016900)	ENSSSCG00000016898	ENSSSCG00000056604	SNX18 (ENSSSCG00000031337)	HSPB3 (ENSSSCG00000036059)	ARL15 (ENSSSCG00000016894)	ENSSSCG00000041656	NDUFS4 (ENSSSCG00000016893)	FST (ENSSSCG00000016892)	MOCS2 (ENSSSCG00000016888)	ITGA2 (ENSSSCG00000016887)	ENSSSCG00000055991 #22	PELO (ENSSSCG00000016884)	ITGA1 (ENSSSCG00000016885)	ISL1 (ENSSSCG00000016883)	PARP8 (ENSSSCG00000016882)	EMB (ENSSSCG00000029484)	ENSSSCG00000016881	HCN1 (ENSSSCG00000026527)	MRPS30 (ENSSSCG00000032275)	FGF10 (ENSSSCG00000016878)	ENSSSCG00000055815	NNT (ENSSSCG00000016877)	PAIP1 (ENSSSCG00000016874)	C5orf34 (ENSSSCG00000016876)	TMEM267 (ENSSSCG00000032979)	CCL28 (ENSSSCG00000016871)
Artiodactyla_a	ANCESTRAL SPECIES	23	ENSGT00940000154619.g.b.a.b	ENSGT00940000154619.g.b.a.a	ENSGT00940000162241 #7	ENSGT00940000163783	ENSGT00940000164306 #8	ENSGT00940000163651 #9	ENSGT00940000164510	ENSGT00940000156425 #12	ENSGT00940000163210 #13	ENSGT00940000164004 #14	ENSGT00940000163463 #15	ENSGT00940000163292	ENSGT00940000162380 #17	ENSGT00390000003354 #21	ENSGT00990000205479	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000155412.b #26	ENSGT00940000164135 #27	ENSGT00390000005065.d #28	ENSGT00940000160969 #29	ENSGT00530000064158 #30	ENSGT01030000234518.C.a.a #31	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311 #36	ENSGT00940000162431 #37
Camelidae	ANCESTRAL SPECIES	61															ENSGT00390000003354 #21	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000155412.b #26	ENSGT00940000164135 #27	ENSGT00390000005065.d #28	ENSGT00940000160969 #29	ENSGT00530000064158 #30	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311 #36	ENSGT00940000162431 #37	ENSGT00940000162184
Arabian camel	MODERN SPECIES	14	OR7G2 (ENSCDRG00005003764)	ENSCDRG00005003785	ENSCDRG00005003842	ZNF317 (ENSCDRG00005003880) #7	ENSCDRG00005003940	ENSCDRG00005003955	ZNF177 (ENSCDRG00005004057) #15	ZNF699 (ENSCDRG00005004185) #13	ENSCDRG00005004237 #12	ENSCDRG00005004256 #12	ENSCDRG00005004274 #9	ENSCDRG00005004292 #20	OR7D4 (ENSCDRG00005004314)	ENSCDRG00005004336	FBXL12 (ENSCDRG00005004348) #21	UBL5 (ENSCDRG00005004386) #22	PIN1 (ENSCDRG00005004410) #23	OLFM2 (ENSCDRG00005004459) #24	COL5A3 (ENSCDRG00005004545) #25	RDH8 (ENSCDRG00005004777) #26	ENSCDRG00005004918 #27	SHFL (ENSCDRG00005006144) #28	ANGPTL6 (ENSCDRG00005006190) #29	PPAN (ENSCDRG00005006218) #30	EIF3G (ENSCDRG00005006325) #32	DNMT1 (ENSCDRG00005006428) #33	S1PR2 (ENSCDRG00005006497) #34	MRPL4 (ENSCDRG00005006515) #35	ICAM1 (ENSCDRG00005006651) #36	ICAM4 (ENSCDRG00005006691) #37	ICAM5 (ENSCDRG00005006746)
Artiodactyla_b	ANCESTRAL SPECIES	23	ENSGT00940000154619.g.a.b.b	ENSGT00940000154619.g.b.a.b	ENSGT00940000154619.g.b.a.a	ENSGT00940000162241 #7	ENSGT00940000163783	ENSGT00940000164306 #8	ENSGT00940000164510.a	ENSGT00940000156425 #12	ENSGT00940000163210 #13	ENSGT00940000164004 #14	ENSGT00940000163463 #15	ENSGT00940000163292	ENSGT00940000162380 #17	ENSGT00390000003354 #21	ENSGT00990000205479	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000155412.b #26	ENSGT00940000164135 #27	ENSGT00390000005065.d #28	ENSGT00940000160969 #29	ENSGT00530000064158 #30	ENSGT01030000234518.C.a.a #31	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311 #36	ENSGT00940000162431 #37
Cetacea	ANCESTRAL SPECIES	1	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000163012	ENSGT00940000160844.c	ENSGT00940000156425 #12	ENSGT00940000163210 #13	ENSGT00940000164004 #14	ENSGT00940000163463 #15	ENSGT00940000162380 #17	ENSGT00940000153165.a.b.a.t.a	ENSGT00390000003354 #21	ENSGT00990000205479	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000155412.b #26	ENSGT00940000164135 #27	ENSGT00390000005065.d #28	ENSGT00940000160969 #29	ENSGT00530000064158 #30	ENSGT01030000234518.C.a.a #31	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311 #36	ENSGT00940000162431 #37
Blue whale	MODERN SPECIES	14	ZNF414 (ENSBMSG00010013078)	MYO1F (ENSBMSG00010012965)	ADAMTS10 (ENSBMSG00010012896)	ACTL9 (ENSBMSG00010012871)	ENSBMSG00010012848	ENSBMSG00010012830 #12	ZNF699 (ENSBMSG00010012815) #13	ZNF177 (ENSBMSG00010012776) #15	ENSBMSG00010012749	ENSBMSG00010012734	ENSBMSG00010012724	ENSBMSG00010012720	ENSBMSG00010012697 #17	ENSBMSG00010012686	FBXL12 (ENSBMSG00010012661) #21	UBL5 (ENSBMSG00010012647) #22	PIN1 (ENSBMSG00010012624) #23	OLFM2 (ENSBMSG00010012599) #24	COL5A3 (ENSBMSG00010012500) #25	RDH8 (ENSBMSG00010012443) #26	ENSBMSG00010012109 #27	SHFL (ENSBMSG00010011987) #28	ANGPTL6 (ENSBMSG00010011973) #29	PPAN (ENSBMSG00010011939) #30	P2RY11 (ENSBMSG00010011933) #31	EIF3G (ENSBMSG00010011917) #32	DNMT1 (ENSBMSG00010011892) #33	S1PR2 (ENSBMSG00010011881) #34	MRPL4 (ENSBMSG00010011859) #35	ICAM1 (ENSBMSG00010011829) #36	ICAM4 (ENSBMSG00010011803) #37
Odontoceti	ANCESTRAL SPECIES	1	ENSGT00940000154595	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000163012	ENSGT00940000160844.c	ENSGT00940000156425 #12	ENSGT00940000163210 #13	ENSGT00940000164004 #14	ENSGT00940000163463 #15	ENSGT00940000162380 #17	ENSGT00390000003354 #21	ENSGT00990000205479	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000155412.b #26	ENSGT00940000164135 #27	ENSGT00390000005065.d #28	ENSGT00940000160969 #29	ENSGT00530000064158 #30	ENSGT01030000234518.C.a.a #31	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311 #36	ENSGT00940000162431 #37
Odontoceti_a	ANCESTRAL SPECIES	1	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000163012	ENSGT00940000160844.c	ENSGT00940000156425 #12	ENSGT00940000163210 #13	ENSGT00940000164004 #14	ENSGT00940000163463 #15	ENSGT00940000163292	ENSGT00940000153686.i	ENSGT00390000003354 #21	ENSGT00990000205479	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000155412.b #26	ENSGT00940000164135 #27	ENSGT00390000005065.d #28	ENSGT00940000160969 #29	ENSGT00530000064158 #30	ENSGT01030000234518.C.a.a #31	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311 #36	ENSGT00940000162431 #37
Dolphin	MODERN SPECIES	4459																UBL5 (ENSTTRG00000008535) #22	PIN1 (ENSTTRG00000008524) #23	OLFM2 (ENSTTRG00000008480) #24
Odontoceti_b	ANCESTRAL SPECIES	1	ENSGT00940000154595	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000163012	ENSGT00940000160844.c	ENSGT00940000156425 #12	ENSGT00940000163210 #13	ENSGT00940000163463 #15	ENSGT00940000163292	ENSGT00940000153686.i	ENSGT00390000003354 #21	ENSGT00990000205479	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000155412.b #26	ENSGT00940000164135 #27	ENSGT00390000005065.d #28	ENSGT00940000160969 #29	ENSGT00530000064158 #30	ENSGT01030000234518.C.a.a #31	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311 #36	ENSGT00940000162431 #37
Vaquita	MODERN SPECIES	14	MARCHF2 (ENSPSNG00000013117)	HNRNPM (ENSPSNG00000013194)	PRAM1 (ENSPSNG00000013286)	ZNF414 (ENSPSNG00000013396)	MYO1F (ENSPSNG00000013483)	ADAMTS10 (ENSPSNG00000014228)	NFILZ (ENSPSNG00000014433)	ACTL9 (ENSPSNG00000014452)	ENSPSNG00000014500	ENSPSNG00000014650 #12	ZNF699 (ENSPSNG00000015586) #13	ENSPSNG00000015654 #15	ENSPSNG00000015869	OR7D4 (ENSPSNG00000016140)	FBXL12 (ENSPSNG00000016895) #21	UBL5 (ENSPSNG00000017005) #22	PIN1 (ENSPSNG00000017083) #23	OLFM2 (ENSPSNG00000017145) #24	COL5A3 (ENSPSNG00000017300) #25	RDH8 (ENSPSNG00000017891) #26	ENSPSNG00000018199 #27	SHFL (ENSPSNG00000019767) #28	ANGPTL6 (ENSPSNG00000019799) #29	PPAN (ENSPSNG00000019833) #30	P2RY11 (ENSPSNG00000019859) #31	EIF3G (ENSPSNG00000019875) #32	ENSPSNG00000019916	DNMT1 (ENSPSNG00000019956) #33	S1PR2 (ENSPSNG00000019997) #34	MRPL4 (ENSPSNG00000020027) #35	ICAM1 (ENSPSNG00000020091) #36
Monodontidae	ANCESTRAL SPECIES	17	ENSGT00940000159478	ENSGT00940000161659	ENSGT00940000158995	ENSGT00940000154595	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000163012	ENSGT00940000160844.c	ENSGT00940000156425 #12	ENSGT00940000163210 #13	ENSGT00940000163463 #15	ENSGT00390000003354 #21	ENSGT00990000205479	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000155412.b #26	ENSGT00940000164135 #27	ENSGT00390000005065.d #28	ENSGT00940000160969 #29	ENSGT00530000064158 #30	ENSGT01030000234518.C.a.a #31	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311 #36	ENSGT00940000162431 #37
Beluga whale	MODERN SPECIES	62	ANGPTL4 (ENSDLEG00000014044)	ENSDLEG00000013992	MARCH2 (ENSDLEG00000013953)	HNRNPM (ENSDLEG00000013836)	PRAM1 (ENSDLEG00000013796)	ZNF414 (ENSDLEG00000013766)	MYO1F (ENSDLEG00000012681)	ADAMTS10 (ENSDLEG00000012334)	ACTL9 (ENSDLEG00000012304)	ENSDLEG00000012289	ENSDLEG00000012286 #12	ZNF699 (ENSDLEG00000012279) #13	ENSDLEG00000012219 #15	FBXL12 (ENSDLEG00000012204) #21	ENSDLEG00000012198	UBL5 (ENSDLEG00000012177) #22	PIN1 (ENSDLEG00000012167) #23	OLFM2 (ENSDLEG00000012039) #24	COL5A3 (ENSDLEG00000010780) #25	RDH8 (ENSDLEG00000010637) #26	ENSDLEG00000009210 #27	CUNH19orf66 (ENSDLEG00000008954) #28	ANGPTL6 (ENSDLEG00000008894) #29	PPAN (ENSDLEG00000008825) #30	P2RY11 (ENSDLEG00000008792) #31	EIF3G (ENSDLEG00000008729) #32	ENSDLEG00000008705	DNMT1 (ENSDLEG00000008585) #33	S1PR2 (ENSDLEG00000008556) #34	MRPL4 (ENSDLEG00000008517) #35	ICAM1 (ENSDLEG00000008458) #36
Narwhal	MODERN SPECIES	298	KANK3 (ENSMMNG00015019936)	ANGPTL4 (ENSMMNG00015019994)	RAB11B (ENSMMNG00015020044)	MARCHF2 (ENSMMNG00015020080)	HNRNPM (ENSMMNG00015020142)	PRAM1 (ENSMMNG00015020241)	ZNF414 (ENSMMNG00015020270)	MYO1F (ENSMMNG00015020312)	ADAMTS10 (ENSMMNG00015020451)	ACTL9 (ENSMMNG00015020513)	ENSMMNG00015020529	ENSMMNG00015020570 #12	ZNF699 (ENSMMNG00015020612) #13	ENSMMNG00015020652 #15	FBXL12 (ENSMMNG00015020707) #21	UBL5 (ENSMMNG00015020729) #22	PIN1 (ENSMMNG00015020753) #23	OLFM2 (ENSMMNG00015020773) #24	COL5A3 (ENSMMNG00015020837) #25	RDH8 (ENSMMNG00015020928) #26	ENSMMNG00015020960 #27	SHFL (ENSMMNG00015021020) #28	ANGPTL6 (ENSMMNG00015021045) #29	PPAN (ENSMMNG00015021073) #30	P2RY11 (ENSMMNG00015021114) #31	EIF3G (ENSMMNG00015021125) #32	ENSMMNG00015021153	ENSMMNG00015021161	DNMT1 (ENSMMNG00015021181) #33	S1PR2 (ENSMMNG00015021200) #34	MRPL4 (ENSMMNG00015021211) #35
Sperm whale	DUPLICATION
Sperm whale	MODERN SPECIES		ENSPCTG00005001988	KCNH8 (ENSPCTG00005002008)	ENSPCTG00005002029	EFHB (ENSPCTG00005002045)	RAB5A (ENSPCTG00005002067)	PP2D1 (ENSPCTG00005002090)	KAT2B (ENSPCTG00005002112)	SGO1 (ENSPCTG00005002136)	ZNF385D (ENSPCTG00005002168)	UBE2E2 (ENSPCTG00005002250)	ENSPCTG00005002282	NKIRAS1 (ENSPCTG00005002302)	ENSPCTG00005002311	NR1D2 (ENSPCTG00005002323)	THRB (ENSPCTG00005002356)	ENSPCTG00005002407 #22	ENSPCTG00005002423	RARB (ENSPCTG00005002435)	TOP2B (ENSPCTG00005002467)	NGLY1 (ENSPCTG00005002617)	OXSM (ENSPCTG00005002681)	LRRC3B (ENSPCTG00005002693)	ENSPCTG00005002714	ENSPCTG00005002721	PLCH1 (ENSPCTG00005002793)	ENSPCTG00005002938	C1H3orf33 (ENSPCTG00005002945)	SLC33A1 (ENSPCTG00005002962)	GMPS (ENSPCTG00005003000)	ENSPCTG00005003035	ENSPCTG00005003068
Sperm whale	MODERN SPECIES	196															FBXL12 (ENSPCTG00005020337) #21	ENSPCTG00005020289 #22	PIN1 (ENSPCTG00005020244) #23	OLFM2 (ENSPCTG00005020175) #24
Pecora	ANCESTRAL SPECIES		ENSGT00940000154619.g.b.a.b.a	ENSGT00940000154619.g.b.a.a.a	ENSGT00950000182890.A.b	ENSGT00940000163154.A.a.a	ENSGT00940000163154.B.e	ENSGT00940000153582.b.a.a.b	ENSGT00940000162241 #7	ENSGT00940000163783	ENSGT00940000164306 #8	ENSGT00940000156425.d.a.a.a.a.a #12	ENSGT00940000163210 #13	ENSGT00940000163463 #15	ENSGT00940000163292	ENSGT00940000162380 #17	ENSGT00390000003354 #21	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000155412.b #26	ENSGT00940000164135 #27	ENSGT00390000005065.d #28	ENSGT00940000160969 #29	ENSGT00530000064158 #30	ENSGT01030000234518.C.a.a #31	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311.c.a #36	ENSGT00940000162431 #37
Yarkand deer	DUPLICATION
Yarkand deer	MODERN SPECIES	12	KCND3 (ENSCHYG00000007683)	DDX20 (ENSCHYG00000007715)	INKA2 (ENSCHYG00000007838)	RAP1A (ENSCHYG00000007851)	TMIGD3 (ENSCHYG00000007896)	C1orf162 (ENSCHYG00000007944)	ENSCHYG00000007985	WDR77 (ENSCHYG00000008032)	ENSCHYG00000008093	ENSCHYG00000008237	ENSCHYG00000008388	ENSCHYG00000008426	ENSCHYG00000008629	ENSCHYG00000010693	CHIA (ENSCHYG00000010860)	ENSCHYG00000011001 #22	CHI3L2 (ENSCHYG00000011034)	DENND2D (ENSCHYG00000011291)	CEPT1 (ENSCHYG00000011445)	DRAM2 (ENSCHYG00000011556)	ENSCHYG00000011636	CD53 (ENSCHYG00000011827)	ENSCHYG00000011890	KCNA3 (ENSCHYG00000011946)	KCNA2 (ENSCHYG00000011991)	KCNA10 (ENSCHYG00000012029)	ENSCHYG00000012048	PROK1 (ENSCHYG00000012093)	LAMTOR5 (ENSCHYG00000012127)	SLC16A4 (ENSCHYG00000012250)	RBM15 (ENSCHYG00000012338)
Yarkand deer	MODERN SPECIES	2	OR1L1 (ENSCHYG00000009579)	ENSCHYG00000009562	OR1B1 (ENSCHYG00000009530)	ENSCHYG00000009511	ENSCHYG00000009379	ENSCHYG00000009312	ENSCHYG00000009274	OR1J1 (ENSCHYG00000009250)	ENSCHYG00000009223	ENSCHYG00000009197	ENSCHYG00000009164	ENSCHYG00000018704	ENSCHYG00000018667	ENSCHYG00000018628	ENSCHYG00000018555	ENSCHYG00000018533 #22	PTGS1 (ENSCHYG00000017893)	ENSCHYG00000017724	MRRF (ENSCHYG00000017424)	ENSCHYG00000017363	LHX6 (ENSCHYG00000017135)	MORN5 (ENSCHYG00000017039)	NDUFA8 (ENSCHYG00000016988)	ENSCHYG00000016926	DAB2IP (ENSCHYG00000016211)	ENSCHYG00000016003	ENSCHYG00000015664	ENSCHYG00000015614	CMPK2 (ENSCHYG00000015445)	RSAD2 (ENSCHYG00000015364)	RNF144A (ENSCHYG00000015190)
Yarkand deer	MODERN SPECIES	32	ENSCHYG00000000612 ##11	ENSCHYG00000000618	ENSCHYG00000000624	ENSCHYG00000000631 #12	ENSCHYG00000000641 ##10	ENSCHYG00000000650 #12	ENSCHYG00000000655 #12	ENSCHYG00000000671	ENSCHYG00000000683 #12	ZNF699 (ENSCHYG00000000751) #13	ZNF177 (ENSCHYG00000000769) #15	ENSCHYG00000000790	ENSCHYG00000000804	ENSCHYG00000000816 #17	FBXL12 (ENSCHYG00000000828) #21	ENSCHYG00000000849 #22	PIN1 (ENSCHYG00000000871) #23	OLFM2 (ENSCHYG00000000890) #24	RDH8 (ENSCHYG00000001045) #26	ENSCHYG00000001067	ENSCHYG00000001157 #27	SHFL (ENSCHYG00000001268) #28	ANGPTL6 (ENSCHYG00000001299) #29	PPAN (ENSCHYG00000001330) #30	EIF3G (ENSCHYG00000001385) #32	DNMT1 (ENSCHYG00000001426) #33	S1PR2 (ENSCHYG00000001459) #34	MRPL4 (ENSCHYG00000001481) #35	ENSCHYG00000001506 #36	ICAM4 (ENSCHYG00000001512) #37	ICAM5 (ENSCHYG00000001528)
Percora_a	ANCESTRAL SPECIES		ENSGT00940000164306 #8	ENSGT00940000163651.l #9	ENSGT00940000164510.b	ENSGT00940000164510.a.a.b.a	ENSGT00940000154131	ENSGT00940000164510.a.b.a	ENSGT00940000156425.d.a.a.a.a.a #12	ENSGT00940000156425.d.a.a.b.a #12	ENSGT00940000156425.d.a.a.a.b #12	ENSGT00940000156425.d.a.a.b.b #12	ENSGT00940000163210 #13	ENSGT00940000163463 #15	ENSGT00940000163292	ENSGT00940000162380 #17	ENSGT00390000003354 #21	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000155412.b #26	ENSGT00940000164135 #27	ENSGT00390000005065.d #28	ENSGT00940000160969 #29	ENSGT00530000064158 #30	ENSGT01030000234518.C.a.a #31	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311.c.b #36	ENSGT00940000162311.c.a #36
Siberian musk deer	MODERN SPECIES	131	ENSMMSG00000004393 ##10	ENSMMSG00000004381	ENSMMSG00000004373 #12	ENSMMSG00000004362 #12	ENSMMSG00000004353 #12	ENSMMSG00000004326 #12	ENSMMSG00000004317 #12	ENSMMSG00000004310 #12	ZNF699 (ENSMMSG00000004299) #13	ENSMMSG00000004294	ENSMMSG00000004282	ENSMMSG00000004274 #17	ENSMMSG00000004267	ENSMMSG00000004258 #15	FBXL12 (ENSMMSG00000004245) #21	UBL5 (ENSMMSG00000004232) #22	PIN1 (ENSMMSG00000004218) #23	OLFM2 (ENSMMSG00000004197) #24	COL5A3 (ENSMMSG00000003961) #25	RDH8 (ENSMMSG00000003898) #26	ENSMMSG00000003224 #27	SHFL (ENSMMSG00000003057) #28	ANGPTL6 (ENSMMSG00000003030) #29	PPAN (ENSMMSG00000002995) #30	P2RY11 (ENSMMSG00000002986) #31	EIF3G (ENSMMSG00000002948) #32	DNMT1 (ENSMMSG00000002790) #33	S1PR2 (ENSMMSG00000002764) #34	MRPL4 (ENSMMSG00000002737) #35	ENSMMSG00000002662 #36	ENSMMSG00000002633 #36
Bovidae	ANCESTRAL SPECIES		ENSGT00940000164306 #8	ENSGT00940000164888.b	ENSGT00940000163651.l #9	ENSGT00940000164510.b	ENSGT00940000164510.a.a.b.a.a	ENSGT00940000154131	ENSGT00940000164510.a.b.a	ENSGT00940000156425.d.a.a.a.a.a #12	ENSGT00940000156425.d.a.a.b.a #12	ENSGT00940000163210 #13	ENSGT00940000163463 #15	ENSGT00940000153165.a.b.a.u	ENSGT00940000162380 #17	ENSGT00940000163292	ENSGT00390000003354 #21	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000155412.b #26	ENSGT00940000164135 #27	ENSGT00390000005065.d #28	ENSGT00940000160969 #29	ENSGT00530000064158 #30	ENSGT01030000234518.C.a.a #31	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311.c.b #36	ENSGT00940000162311.c.a #36
Caprinae	ANCESTRAL SPECIES	3	ENSGT00940000163945.a	ENSGT00940000154619.g.a.b.a	ENSGT00940000154619.g.b.a.a.a	ENSGT00940000162241 #7	ENSGT00940000163783	ENSGT00940000164306 #8	ENSGT00940000163651.l #9	ENSGT00940000164510.b	ENSGT00940000164510.a.b.a	ENSGT00940000156425.d.a.a.b.a #12	ENSGT00940000163210 #13	ENSGT00940000163463 #15	ENSGT00940000153165.a.b.a.u	ENSGT00940000162380 #17	ENSGT00390000003354 #21	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000155412.b #26	ENSGT00940000164135 #27	ENSGT00390000005065.d #28	ENSGT00940000160969 #29	ENSGT00530000064158 #30	ENSGT01030000234518.C.a.a #31	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311.c.a #36	ENSGT00940000162431 #37
Rambouillet Sheep	MODERN SPECIES	21	ENSOARG00020000501	ENSOARG00020000513	ENSOARG00020000555	ZNF317 (ENSOARG00020000578) #7	ENSOARG00020000630	OR7D2 (ENSOARG00020000640) #8	ENSOARG00020000655 #9	ENSOARG00020000670	ENSOARG00020000678	ENSOARG00020000688	ENSOARG00020000705	ENSOARG00020000708	ENSOARG00020000730 #12	ZNF699 (ENSOARG00020000751) #13	FBXL12 (ENSOARG00020000845) #21	UBL5 (ENSOARG00020000869) #22	PIN1 (ENSOARG00020000893) #23	OLFM2 (ENSOARG00020000916) #24	COL5A3 (ENSOARG00020001143) #25	RDH8 (ENSOARG00020002133) #26	ENSOARG00020002281 #27	SHFL (ENSOARG00020003046) ##28	ENSOARG00020003136 #29	PPAN (ENSOARG00020003235) #30	ENSOARG00020003511	ENSOARG00020003518	ENSOARG00020003533	ENSOARG00020003548 ##28	ENSOARG00020003602 #29	EIF3G (ENSOARG00020003676) #32	DNMT1 (ENSOARG00020003738) #33
Bovinae	ANCESTRAL SPECIES	2	ENSGT01030000234623.a.a.a.a.b.p	ENSGT00940000164510.a.b.b	ENSGT00940000156425.d.a.b #12	ENSGT00940000156425.d.a.a.a.a.b #12	ENSGT00940000156425.d.b #12	ENSGT00940000156425.d.a.a.a.b #12	ENSGT00940000156425.d.a.a.b.a #12	ENSGT00940000156425.d.a.a.a.a.a #12	ENSGT00940000156425.d.a.a.b.b #12	ENSGT00940000163210 #13	ENSGT00940000163463 #15	ENSGT00940000153165.a.b.a.u	ENSGT00940000162380 #17	ENSGT00940000163292	ENSGT00390000003354 #21	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000155412.b #26	ENSGT00940000164135 #27	ENSGT00390000005065.d #28	ENSGT00940000160969 #29	ENSGT00530000064158 #30	ENSGT01030000234518.C.a.a #31	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311.c.b #36	ENSGT00940000162311.c.a #36
American bison	DUPLICATION
American bison	MODERN SPECIES	3349	OXTR (ENSBBBG00000014600)	RAD18 (ENSBBBG00000014638)	SRGAP3 (ENSBBBG00000014747)	ENSBBBG00000014775	ENSBBBG00000014779	ENSBBBG00000008911	ENSBBBG00000007134 #12	ENSBBBG00000003641 #12	ENSBBBG00000014797 #12	ENSBBBG00000014809 #12	ENSBBBG00000002816 #12	ENSBBBG00000014850 #12	ZNF177 (ENSBBBG00000002804) #15	ENSBBBG00000001106	FBXL12 (ENSBBBG00000001083) #21	UBL5 (ENSBBBG00000001060) #22	PIN1 (ENSBBBG00000001029) #23	OLFM2 (ENSBBBG00000001003) #24	COL5A3 (ENSBBBG00000000880) #25	RDH8 (ENSBBBG00000000860) #26	ENSBBBG00000003785 #27	SHFL (ENSBBBG00000015312) #28	ANGPTL6 (ENSBBBG00000001396) #29	PPAN (ENSBBBG00000001358) #30	P2RY11 (ENSBBBG00000001353) #31	EIF3G (ENSBBBG00000001326) #32	DNMT1 (ENSBBBG00000003484) #33	S1PR2 (ENSBBBG00000015343) #34	MRPL4 (ENSBBBG00000015394) #35	ICAM1 (ENSBBBG00000015412) #36	ICAM4 (ENSBBBG00000003843) #37
American bison	MODERN SPECIES	3109	CYBRD1 (ENSBBBG00000005056)	ENSBBBG00000005051	ENSBBBG00000019334	ENSBBBG00000009175	DYNC1I2 (ENSBBBG00000019323)	SLC25A12 (ENSBBBG00000019135)	HAT1 (ENSBBBG00000009158)	METAP1D (ENSBBBG00000019106)	DLX1 (ENSBBBG00000019095)	DLX2 (ENSBBBG00000019086)	ITGA6 (ENSBBBG00000004869)	PDK1 (ENSBBBG00000018765)	RAPGEF4 (ENSBBBG00000018704)	MAP3K20 (ENSBBBG00000018360)	CDCA7 (ENSBBBG00000018271)	ENSBBBG00000018261 #22
Bos	ANCESTRAL SPECIES	3	ENSGT01030000234623.a.a.a.a.b.p	ENSGT00940000164510.a.b.b	ENSGT00940000156425.d.a.a.a.a.a.b #12	ENSGT00940000156425.d.a.b #12	ENSGT00940000156425.d.a.a.a.a.b #12	ENSGT00940000156425.d.b #12	ENSGT00940000156425.d.a.a.a.b #12	ENSGT00940000156425.d.a.a.b.a #12	ENSGT00940000156425.d.a.a.b.b #12	ENSGT00940000163210 #13	ENSGT00940000163463 #15	ENSGT00940000153165.a.b.a.u	ENSGT00940000162380 #17	ENSGT00940000163292	ENSGT00390000003354 #21	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000155412.b #26	ENSGT00940000164135 #27	ENSGT00390000005065.d #28	ENSGT00940000160969 #29	ENSGT00530000064158 #30	ENSGT01030000234518.C.a.a #31	ENSGT00510000047802.p #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311.c.b #36	ENSGT00940000162311.c.a #36
Bos_a	ANCESTRAL SPECIES	2		ENSGT00940000154131	ENSGT00940000164510.a.b.a	ENSGT00940000156425.d.a.a.a.a.a.b #12	ENSGT00940000156425.d.a.b #12	ENSGT00940000156425.d.a.a.a.a.b #12	ENSGT00940000156425.d.a.a.a.b #12	ENSGT00940000156425.d.a.a.b.a #12	ENSGT00940000156425.d.a.a.b.b #12	ENSGT00940000163210 #13	ENSGT00940000163463 #15	ENSGT00940000153165.a.b.a.u	ENSGT00940000162380 #17	ENSGT00940000163292	ENSGT00390000003354 #21	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000155412.b #26	ENSGT00940000164135 #27	ENSGT00390000005065.d #28	ENSGT00940000160969 #29	ENSGT00530000064158 #30	ENSGT01030000234518.C.a.a #31	ENSGT00510000047802.p #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311.c.a #36	ENSGT00940000162431 #37
Domestic yak	DUPLICATION
Domestic yak	MODERN SPECIES	11	ENSBGRG00000009482	ENSBGRG00000009517	DYNC1I2 (ENSBGRG00000009556)	SLC25A12 (ENSBGRG00000009957)	HAT1 (ENSBGRG00000010265)	METAP1D (ENSBGRG00000010401)	DLX1 (ENSBGRG00000010658)	DLX2 (ENSBGRG00000010765)	ITGA6 (ENSBGRG00000010970)	ENSBGRG00000011777	PDK1 (ENSBGRG00000011803)	RAPGEF4 (ENSBGRG00000012108)	MAP3K20 (ENSBGRG00000013013)	CDCA7 (ENSBGRG00000013198)	ENSBGRG00000013492	ENSBGRG00000013535 #22	SP3 (ENSBGRG00000013570)	ENSBGRG00000013676	ENSBGRG00000013728	SP9 (ENSBGRG00000014139)	CIR1 (ENSBGRG00000014162)	SCRN3 (ENSBGRG00000014271)	GPR155 (ENSBGRG00000014360)	ENSBGRG00000014674	ENSBGRG00000014699	CHRNA1 (ENSBGRG00000014839)	CHN1 (ENSBGRG00000015101)	ATF2 (ENSBGRG00000015648)	ATP5MC3 (ENSBGRG00000016024)	ENSBGRG00000016132	LNPK (ENSBGRG00000016182)
Domestic yak	MODERN SPECIES	27	ENSBGRG00000001282	ENSBGRG00000001285	ENSBGRG00000001294	ENSBGRG00000001311	ENSBGRG00000001319 #12	ENSBGRG00000001325 #12	ENSBGRG00000001334 #12	ENSBGRG00000001371 #12	ENSBGRG00000001386 #12	ZNF699 (ENSBGRG00000001399) #13	ZNF177 (ENSBGRG00000001426) #15	ENSBGRG00000001454	ENSBGRG00000001463	ENSBGRG00000001489	FBXL12 (ENSBGRG00000001506) #21	ENSBGRG00000001526 #22	PIN1 (ENSBGRG00000001548) #23	OLFM2 (ENSBGRG00000001600) #24	COL5A3 (ENSBGRG00000001716) #25	RDH8 (ENSBGRG00000001767) #26	SHFL (ENSBGRG00000002101) ##28	ANGPTL6 (ENSBGRG00000002157) #29	PPAN (ENSBGRG00000002190) #30	P2RY11 (ENSBGRG00000002275) #31	EIF3G (ENSBGRG00000002308) #32	DNMT1 (ENSBGRG00000002388) #33	S1PR2 (ENSBGRG00000002416) #34	MRPL4 (ENSBGRG00000002458) #35	ENSBGRG00000002625 #36	ICAM4 (ENSBGRG00000002716) #37	ICAM5 (ENSBGRG00000002740)
Wild yak	DUPLICATION
Wild yak	MODERN SPECIES	2505																ENSBMUG00000026586 #22
Wild yak	MODERN SPECIES	2786																ENSBMUG00000021710 #22	PIN1 (ENSBMUG00000021698) #23	OLFM2 (ENSBMUG00000021685) #24	COL5A3 (ENSBMUG00000021640) #25	RDH8 (ENSBMUG00000021585) #26	ENSBMUG00000021441 #27	SHFL (ENSBMUG00000021026) #28	ANGPTL6 (ENSBMUG00000020986) #29	PPAN (ENSBMUG00000020960) #30	P2RY11 (ENSBMUG00000020941) #31	EIF3G (ENSBMUG00000020932) #32	DNMT1 (ENSBMUG00000020870) #33	S1PR2 (ENSBMUG00000020784) #34	MRPL4 (ENSBMUG00000020770) #35	ENSBMUG00000020740 #36
Bos_b	ANCESTRAL SPECIES	2	ENSGT00940000164510.a.b.b	ENSGT00940000156425.d.a.a.a.a.a.b #12	ENSGT00940000156425.d.a.b #12	ENSGT00940000156425.d.a.a.a.a.b #12	ENSGT00940000156425.d.b #12	ENSGT00940000156425.d.a.a.a.a.a.a.a #12	ENSGT00940000156425.d.a.a.a.b #12	ENSGT00940000156425.d.a.a.b.a #12	ENSGT00940000156425.d.a.a.b.b #12	ENSGT00940000163210 #13	ENSGT00940000153165.a.b.a.u	ENSGT00940000162380 #17	ENSGT00940000163292	ENSGT00940000163463 #15	ENSGT00390000003354 #21	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000155412.b #26	ENSGT00940000164135 #27	ENSGT00390000005065.d #28	ENSGT00940000160969 #29	ENSGT00530000064158 #30	ENSGT01030000234518.C.a.a #31	ENSGT00510000047802.p #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00950000185283	ENSGT00940000162311.d #36
Cow	DUPLICATION
Cow	MODERN SPECIES	11	DCAF17 (ENSBTAG00000007683)	ENSBTAG00000053081	CYBRD1 (ENSBTAG00000007898)	ENSBTAG00000048244	DYNC1I2 (ENSBTAG00000002646)	SLC25A12 (ENSBTAG00000016762)	HAT1 (ENSBTAG00000010118)	METAP1D (ENSBTAG00000019075)	DLX1 (ENSBTAG00000015217)	DLX2 (ENSBTAG00000005741)	ITGA6 (ENSBTAG00000017266)	PDK1 (ENSBTAG00000016836)	RAPGEF4 (ENSBTAG00000020984)	MAP3K20 (ENSBTAG00000001083)	CDCA7 (ENSBTAG00000003458)	ENSBTAG00000050579 #22	SP3 (ENSBTAG00000000176)	ENSBTAG00000053359	OLA1 (ENSBTAG00000006970)	ENSBTAG00000052569	SP9 (ENSBTAG00000014949)	CIR1 (ENSBTAG00000038620)	SCRN3 (ENSBTAG00000012966)	GPR155 (ENSBTAG00000021636)	WIPF1 (ENSBTAG00000001585)	CHRNA1 (ENSBTAG00000018253)	CHN1 (ENSBTAG00000008028)	ATF2 (ENSBTAG00000002295)	ATP5MC3 (ENSBTAG00000002944)	ENSBTAG00000031711	LNPK (ENSBTAG00000018061)
Cow	MODERN SPECIES		HLCS (ENSBTAG00000033679)	RIPPLY3 (ENSBTAG00000051916)	PIGP (ENSBTAG00000055107)	TTC3 (ENSBTAG00000008167)	VPS26C (ENSBTAG00000004791)	DYRK1A (ENSBTAG00000001771)	KCNJ6 (ENSBTAG00000037616)	KCNJ15 (ENSBTAG00000000973)	ERG (ENSBTAG00000011001)	ETS2 (ENSBTAG00000009214)	PIK3R4 (ENSBTAG00000020787)	COL6A6 (ENSBTAG00000012837)	COL6A5 (ENSBTAG00000049122)	CAPN7 (ENSBTAG00000006479)	SH3BP5 (ENSBTAG00000023377)	ENSBTAG00000030592 #22	METTL6 (ENSBTAG00000023375)	EAF1 (ENSBTAG00000019202)	COLQ (ENSBTAG00000051541)	COLQ (ENSBTAG00000040193)	HACL1 (ENSBTAG00000003718)	BTD (ENSBTAG00000019129)	ANKRD28 (ENSBTAG00000024815)	GALNT15 (ENSBTAG00000008240)	ENSBTAG00000051065	DPH3 (ENSBTAG00000003916)	ENSBTAG00000053091	OXNAD1 (ENSBTAG00000004891)	RFTN1 (ENSBTAG00000030593)	ENSBTAG00000051752	DAZL (ENSBTAG00000000502)
Cow	MODERN SPECIES	26	OR7E202 (ENSBTAG00000040482)	ENSBTAG00000054866 #12	OR7E191P (ENSBTAG00000051507) #12	ENSBTAG00000004369 #12	ENSBTAG00000053212 #12	OR7E184P (ENSBTAG00000054276) #12	OR7E188 (ENSBTAG00000047799) #12	ENSBTAG00000050203 #12	ENSBTAG00000046139 #12	ENSBTAG00000047414 #12	ZNF177 (ENSBTAG00000050244) #15	ENSBTAG00000025146	ZNF266 (ENSBTAG00000049881)	ENSBTAG00000035777 #15	FBXL12 (ENSBTAG00000025148) #21	UBL5 (ENSBTAG00000049452) #22	PIN1 (ENSBTAG00000016988) #23	OLFM2 (ENSBTAG00000007550) #24	COL5A3 (ENSBTAG00000010179) #25	RDH8 (ENSBTAG00000010188) #26	ENSBTAG00000015557 #27	SHFL (ENSBTAG00000015636) ##28	ANGPTL6 (ENSBTAG00000039302) #29	PPAN (ENSBTAG00000012745) #30	P2RY11 (ENSBTAG00000013536) #31	EIF3G (ENSBTAG00000002734) #32	DNMT1 (ENSBTAG00000002736) #33	S1PR2 (ENSBTAG00000002738) #34	MRPL4 (ENSBTAG00000001419)	ENSBTAG00000053933 #36	ENSBTAG00000049560 #36
Hybrid Bos Indicus	DUPLICATION
Hybrid Bos Indicus	MODERN SPECIES	11	ENSBIXG00005004610	CYBRD1 (ENSBIXG00005026983)	DYNC1I2 (ENSBIXG00005027153)	SLC25A12 (ENSBIXG00005027277)	ENSBIXG00005027305	HAT1 (ENSBIXG00005005621)	DLX1 (ENSBIXG00005006946)	DLX2 (ENSBIXG00005027459)	ENSBIXG00005027485	ENSBIXG00005027496	ITGA6 (ENSBIXG00005027649)	PDK1 (ENSBIXG00005006953)	RAPGEF4 (ENSBIXG00005028149)	MAP3K20 (ENSBIXG00005028315)	CDCA7 (ENSBIXG00005028490)	ENSBIXG00005028515 #22	SP3 (ENSBIXG00005005344)	ENSBIXG00005004930	OLA1 (ENSBIXG00005028684)	ENSBIXG00005004969	SP9 (ENSBIXG00005002344)	CIR1 (ENSBIXG00005005349)	SCRN3 (ENSBIXG00005028812)	GPR155 (ENSBIXG00005028873)	ENSBIXG00005002196	CHRNA1 (ENSBIXG00005028981)	CHN1 (ENSBIXG00005001962)	ATF2 (ENSBIXG00005001719)	ATP5MC3 (ENSBIXG00005029222)	ENSBIXG00005029239	LNPK (ENSBIXG00005005282)
Hybrid Bos Indicus	MODERN SPECIES	26	OR7G1 (ENSBIXG00005024892)	ENSBIXG00005024899	ENSBIXG00005024908	ENSBIXG00005024944	ENSBIXG00005007397 #12	ENSBIXG00005006684 #12	ENSBIXG00005024990 #12	ENSBIXG00005025112 #12	ENSBIXG00005025131 #12	ENSBIXG00005004278 #13	ZNF177 (ENSBIXG00005025181) #15	ENSBIXG00005004287	ENSBIXG00005006857 #17	ENSBIXG00005006524	FBXL12 (ENSBIXG00005025351) #21	ENSBIXG00005004319 #22	PIN1 (ENSBIXG00005025457) #23	OLFM2 (ENSBIXG00005004339) #24	COL5A3 (ENSBIXG00005025683) #25	RDH8 (ENSBIXG00005025738) #26	ENSBIXG00005025866 #27	SHFL (ENSBIXG00005025958) #28	ANGPTL6 (ENSBIXG00005026015) #29	PPAN (ENSBIXG00005026042) #30	P2RY11 (ENSBIXG00005007635) #31	EIF3G (ENSBIXG00005026069) #32	DNMT1 (ENSBIXG00005026225) #33	S1PR2 (ENSBIXG00005002546) #34	MRPL4 (ENSBIXG00005026363) #35	ENSBIXG00005026424 #36	ENSBIXG00005026437 #36
Euarchontoglires	ANCESTRAL SPECIES	18	ENSGT01090000260018.B.a.b	ENSGT00940000160844.a	ENSGT00950000183005.b.c.a	ENSGT00440000039287	ENSGT00940000163044	ENSGT00940000154131	ENSGT00940000162532	ENSGT00940000154619	ENSGT00940000163146	ENSGT00940000162241 #7	ENSGT00940000164306 #8	ENSGT00940000153686	ENSGT00940000153277.A.b.b.a #11	ENSGT00940000163958 #20	ENSGT00390000003354 #21	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000155412.b #26	ENSGT00940000164135 #27	ENSGT00390000005065 #28	ENSGT00940000160969 #29	ENSGT00530000064158 #30	ENSGT01030000234518.C.a.a #31	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT00940000172524	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311 #36
Euarchontoglires_A	ANCESTRAL SPECIES	20	ENSGT01090000260018.B.a.b	ENSGT00950000183005.b.c.b	ENSGT00940000160844.a	ENSGT00950000183005.b.c.a	ENSGT00440000039287	ENSGT00940000163044	ENSGT00940000154131	ENSGT00940000154619	ENSGT00940000162532	ENSGT00940000162241 #7	ENSGT00940000163783	ENSGT00940000163151	ENSGT00940000162380 #17	ENSGT00940000163292	ENSGT00390000003354 #21	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000155412.b #26	ENSGT00940000164135 #27	ENSGT00390000005065 #28	ENSGT00940000160969 #29	ENSGT00530000064158 #30	ENSGT01030000234518.C.a.a #31	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT00940000172524	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311 #36
Glires	ANCESTRAL SPECIES	21	ENSGT00940000162241 #7	ENSGT00940000163783	ENSGT00940000162877 #10	ENSGT00940000153277.A.b.b.a #11	ENSGT00940000153686	ENSGT00940000153277.A.b.b.b.a #11	ENSGT00940000156425 #12	ENSGT00940000153277.A.b.a #11	ENSGT00940000163210 #13	ENSGT00940000163463 #15	ENSGT00940000162380 #17	ENSGT00940000163151	ENSGT00940000164232	ENSGT00940000163292	ENSGT00390000003354 #21	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000155412.b #26	ENSGT00940000164135 #27	ENSGT00390000005065 #28	ENSGT00940000160969 #29	ENSGT00530000064158 #30	ENSGT01030000234518.C.a.a #31	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT00940000172524	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311 #36
Rodentia	ANCESTRAL SPECIES	17	ENSGT00940000163783	ENSGT00940000153686.`b.b.b	ENSGT00940000153277.A.b.b.a #11	ENSGT00940000153686.`b.a	ENSGT00940000153277.A.b.a.b #11	ENSGT00940000153686.`b.b.a	ENSGT00940000153277.A.b.a.a.a #11	ENSGT00940000163210 #13	ENSGT00940000163463 #15	ENSGT00940000163151	ENSGT00940000164232	ENSGT00940000163292.d	ENSGT00940000162380 #17	ENSGT00950000183169.B	ENSGT00390000003354 #21	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000155412.b #26	ENSGT00940000164135 #27	ENSGT00390000005065 #28	ENSGT00940000160969 #29	ENSGT00530000064158 #30	ENSGT01030000234518.C.a.a #31	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT00940000172524	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311 #36
Rodentia_A	ANCESTRAL SPECIES	16	ENSGT00940000162241 #7	ENSGT00940000163783	ENSGT00940000153686.`b.b.b	ENSGT00940000156425 #12	ENSGT00940000153277.A.b.a.b.a.a #11	ENSGT00940000153686.`b.b.a	ENSGT00940000153277.A.b.a.a.a #11	ENSGT00940000163210 #13	ENSGT00940000163463 #15	ENSGT00940000162380 #17	ENSGT00950000183169.B.f	ENSGT00940000163151.d	ENSGT00940000164232	ENSGT00940000163151.c	ENSGT00390000003354 #21	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000155412.b #26	ENSGT00940000164135 #27	ENSGT00390000005065 #28	ENSGT00940000160969 #29	ENSGT00530000064158 #30	ENSGT01030000234518.C.a.a #31	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT00940000172524	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311 #36
Sciuridae	DUPLICATION
Sciuridae	ANCESTRAL SPECIES	159																ENSGT00390000001945.e #22	ENSGT00960000189235
Marmotini	ANCESTRAL SPECIES	263																ENSGT00390000001945.e #22	ENSGT00960000189235
Alpin marmot	MODERN SPECIES	299																ENSMMMG00000008197 #22	ENSMMMG00000008180
Sciuridae	ANCESTRAL SPECIES	20								ENSGT00940000163210 #13	ENSGT00940000163463 #15	ENSGT00940000164232	ENSGT00940000162380 #17	ENSGT00940000163151.d	ENSGT01030000238001	ENSGT00940000163151.c	ENSGT00390000003354 #21	ENSGT00390000001945.f #22	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000165585	ENSGT00940000155412.b #26	ENSGT00940000164135 #27	ENSGT00390000005065 #28	ENSGT00940000160969 #29	ENSGT00530000064158 #30	ENSGT01030000234518.C.a.a #31	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311 #36
Eurasian red squirrel	MODERN SPECIES	7	ENSSVLG00005023110 ##11	ENSSVLG00005023132 #9	ENSSVLG00005023145	ENSSVLG00005023188 #13	ZNF177 (ENSSVLG00005023232) #15	ENSSVLG00005016838	ENSSVLG00005016910	ENSSVLG00005016971	ENSSVLG00005017030	ENSSVLG00005017115	ENSSVLG00005017289	ENSSVLG00005017328	ENSSVLG00005017365 #20	ENSSVLG00005017383	FBXL12 (ENSSVLG00005017464) #21	UBL5 (ENSSVLG00005017569) #22	PIN1 (ENSSVLG00005017665) #23	OLFM2 (ENSSVLG00005017772) #24	RDH8 (ENSSVLG00005018552) #26	ENSSVLG00005018754 #27	SHFL (ENSSVLG00005019608) #28	ANGPTL6 (ENSSVLG00005019674) #29	PPAN (ENSSVLG00005019747) #30	P2RY11 (ENSSVLG00005019829) #31	EIF3G (ENSSVLG00005019867) #32	DNMT1 (ENSSVLG00005019922) #33	S1PR2 (ENSSVLG00005019959) #34	MRPL4 (ENSSVLG00005020006) #35	ICAM1 (ENSSVLG00005020131) #36	ICAM4 (ENSSVLG00005020213) #37	ICAM5 (ENSSVLG00005020255)
Marmotini	ANCESTRAL SPECIES	41										ENSGT00940000164232	ENSGT01030000238001	ENSGT00940000163151.d	ENSGT00940000162380 #17	ENSGT00940000163151.c	ENSGT00390000003354 #21	ENSGT00390000001945.f #22	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000165585	ENSGT00390000005065 #28	ENSGT00940000160969 #29	ENSGT00530000064158 #30	ENSGT01030000234518.C.a.a #31	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311 #36	ENSGT00940000162431 #37	ENSGT00940000162184
Alpin marmot	MODERN SPECIES	24							ENSMMMG00000015466 #17	ENSMMMG00000015474	ENSMMMG00000015479	ENSMMMG00000015485	ENSMMMG00000015489	ENSMMMG00000015501 #17	ENSMMMG00000015508	ENSMMMG00000015621 #17	FBXL12 (ENSMMMG00000015655) #21	UBL5 (ENSMMMG00000015668) #22	PIN1 (ENSMMMG00000015677) #23	OLFM2 (ENSMMMG00000015681) #24	SHFL (ENSMMMG00000015812) #28	ANGPTL6 (ENSMMMG00000015819) #29	PPAN (ENSMMMG00000015833) #30	P2RY11 (ENSMMMG00000015865) #31	ENSMMMG00000015867 #32	DNMT1 (ENSMMMG00000015887) #33	S1PR2 (ENSMMMG00000017008) #34	MRPL4 (ENSMMMG00000017010) #35	ICAM1 (ENSMMMG00000017017) #36	ICAM4 (ENSMMMG00000017853) #37	ICAM5 (ENSMMMG00000017859)	ENSMMMG00000017874	FDX2 (ENSMMMG00000017878)
Marmotini_b	ANCESTRAL SPECIES	40										ENSGT00940000163463 #15	ENSGT00940000163151.d	ENSGT00940000164232	ENSGT00940000162380 #17	ENSGT00940000163151.c	ENSGT00390000003354 #21	ENSGT00390000001945.f #22	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000165585	ENSGT00390000005065 #28	ENSGT00940000160969 #29	ENSGT00530000064158 #30	ENSGT01030000234518.C.a.a #31	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311 #36	ENSGT00940000162431 #37	ENSGT00940000162184
Squirrel	MODERN SPECIES	259								ZNF177 (ENSSTOG00000031518) #15	ENSSTOG00000033893	ENSSTOG00000023536	ENSSTOG00000033735 #17	ENSSTOG00000030417 #17	ENSSTOG00000032983 #17	ENSSTOG00000033919	FBXL12 (ENSSTOG00000005277) #21	UBL5 (ENSSTOG00000005286) #22	PIN1 (ENSSTOG00000005299) #23	OLFM2 (ENSSTOG00000005307) #24	COL5A3 (ENSSTOG00000015075) #25	ENSSTOG00000015104	SHFL (ENSSTOG00000026700) #28	ANGPTL6 (ENSSTOG00000028080) #29	PPAN (ENSSTOG00000010828) #30	P2RY11 (ENSSTOG00000010839) #31	EIF3G (ENSSTOG00000027655) #32	DNMT1 (ENSSTOG00000010841) #33	S1PR2 (ENSSTOG00000022687) #34	MRPL4 (ENSSTOG00000030121) #35	ICAM1 (ENSSTOG00000031629) #36	ICAM4 (ENSSTOG00000019729) #37	ICAM5 (ENSSTOG00000008181)
Arctic ground squirrel	MODERN SPECIES	217								ENSUPAG00010022258	ENSUPAG00010022265 #15	ENSUPAG00010022267	ENSUPAG00010022270	ENSUPAG00010022282	ENSUPAG00010022422 #17	ENSUPAG00010022423 #17	FBXL12 (ENSUPAG00010022424) #21	UBL5 (ENSUPAG00010022426) #22	PIN1 (ENSUPAG00010022430) #23	OLFM2 (ENSUPAG00010022432) #24	ENSUPAG00010022438 #25	ENSUPAG00010000044	SHFL (ENSUPAG00010000069) #28	ANGPTL6 (ENSUPAG00010000091) #29	PPAN (ENSUPAG00010000094) #30	P2RY11 (ENSUPAG00010000138) #31	EIF3G (ENSUPAG00010000146) #32	DNMT1 (ENSUPAG00010000182) #33	S1PR2 (ENSUPAG00010000933) #34	MRPL4 (ENSUPAG00010000934) #35	ICAM1 (ENSUPAG00010000950) #36	ICAM4 (ENSUPAG00010000954) #37	ICAM5 (ENSUPAG00010000960)
Hystricomorpha	ANCESTRAL SPECIES	19	ENSGT00950000183005.b.c.b	ENSGT00940000160844.a	ENSGT00950000183005.b.c.a	ENSGT00940000163044	ENSGT00940000162241 #7	ENSGT00940000153686.`b.b.a	ENSGT00940000153277.A.b.a.a.a #11	ENSGT00940000163210.c #13	ENSGT00940000163463 #15	ENSGT00940000162380 #17	ENSGT00950000183169.B.f	ENSGT00940000163151.d	ENSGT00940000164232	ENSGT00940000163151.c	ENSGT00390000003354 #21	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000155412.b #26	ENSGT00390000005065 #28	ENSGT00940000160969 #29	ENSGT00530000064158 #30	ENSGT01030000234518.C.a.a #31	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT00940000172524	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311 #36	ENSGT00940000162431 #37
Naked mole-rat female	MODERN SPECIES	21	ENSHGLG00000038616 #9	ENSHGLG00000047792 #13	ENSHGLG00000046196 #15	ENSHGLG00000012460 #17	ENSHGLG00000019054	ENSHGLG00000005362	ENSHGLG00000031977	ENSHGLG00000009845	ENSHGLG00000036574 #17	ENSHGLG00000044180 #17	ENSHGLG00000038312	ENSHGLG00000032352	ENSHGLG00000040640	ENSHGLG00000041050	ENSHGLG00000046307	ENSHGLG00000044009 #22	FBXL12 (ENSHGLG00000007695) #21	PIN1 (ENSHGLG00000050268) #23	OLFM2 (ENSHGLG00000005597) #24	COL5A3 (ENSHGLG00000008192) #25	RDH8 (ENSHGLG00000035579) #26	ENSHGLG00000044492	SHFL (ENSHGLG00000018950) #28	ANGPTL6 (ENSHGLG00000005437) #29	PPAN (ENSHGLG00000006964) #30	P2RY11 (ENSHGLG00000042365) #31	EIF3G (ENSHGLG00000009901) #32	DNMT1 (ENSHGLG00000018262) #33	ENSHGLG00000037635	MRPL4 (ENSHGLG00000007839) #35	S1PR2 (ENSHGLG00000041926) #34
Hystricomorpha_a	ANCESTRAL SPECIES	15					ENSGT00940000163044	ENSGT00940000162241 #7	ENSGT00940000153686.`b.b.a	ENSGT00940000153277.A.b.a.a.a #11	ENSGT00940000163210.c #13	ENSGT00940000163151.d	ENSGT00940000164232	ENSGT00940000162380 #17	ENSGT00950000183169.B.f	ENSGT00940000163151.c	ENSGT00390000003354 #21	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000155412.b #26	ENSGT00390000005065 #28	ENSGT00940000160969 #29	ENSGT00530000064158 #30	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311 #36	ENSGT00940000162431 #37	ENSGT00940000162184	ENSGT00470000042444
Guinea pig	MODERN SPECIES	172	ENSCPOG00000038639 #11	ENSCPOG00000009673	ENSCPOG00000032931	ENSCPOG00000040694 #11	ENSCPOG00000003013	ENSCPOG00000031001 #11	ENSCPOG00000036661 #11	ENSCPOG00000036355 #9	ENSCPOG00000036986	ENSCPOG00000032445	ENSCPOG00000031475 #9	ENSCPOG00000006662 #11	ENSCPOG00000030371	ENSCPOG00000038099	FBXL12 (ENSCPOG00000031097) #21	UBL5 (ENSCPOG00000040527) #22	PIN1 (ENSCPOG00000021671) #23	OLFM2 (ENSCPOG00000025030) #24
Hystricomorpha_b	ANCESTRAL SPECIES	17									ENSGT00940000163044	ENSGT00940000162241 #7	ENSGT00940000153277.A.b.a.b.b #11	ENSGT00940000164232	ENSGT00950000183169.B.f	ENSGT00940000162380 #17	ENSGT00390000003354 #21	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000155412.b #26	ENSGT00390000005065 #28	ENSGT00940000160969 #29	ENSGT00530000064158 #30	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311 #36	ENSGT00940000162431 #37	ENSGT00940000162184	ENSGT00470000042444
Long-tailed chinchilla	MODERN SPECIES	202					OR1M1 (ENSCLAG00000017321)	ZNF317 (ENSCLAG00000013328) #7	ENSCLAG00000014801	ENSCLAG00000006814 #11	ZNF699 (ENSCLAG00000013129) #13	ENSCLAG00000012556	ENSCLAG00000013451	ENSCLAG00000007380 #17	ENSCLAG00000009897	ENSCLAG00000014448	FBXL12 (ENSCLAG00000007941) #21	UBL5 (ENSCLAG00000009157) #22	PIN1 (ENSCLAG00000010041) #23	OLFM2 (ENSCLAG00000010808) #24	ENSCLAG00000006705	RDH8 (ENSCLAG00000008572) #26	SHFL (ENSCLAG00000007234) #28	ANGPTL6 (ENSCLAG00000008492) #29	PPAN (ENSCLAG00000009362) #30	EIF3G (ENSCLAG00000007381) #32	DNMT1 (ENSCLAG00000009575) #33	S1PR2 (ENSCLAG00000017915) #34	MRPL4 (ENSCLAG00000004552) #35	ICAM1 (ENSCLAG00000005350) #36	ICAM4 (ENSCLAG00000006269) #37	ICAM5 (ENSCLAG00000004832)	ZGLP1 (ENSCLAG00000006578)
Degu	MODERN SPECIES	91	ENSODEG00000017111 #11	ENSODEG00000020461	ENSODEG00000016810 #11	ENSODEG00000016729 ##11	ENSODEG00000017217	ENSODEG00000016481	ENSODEG00000016968 #9	ENSODEG00000017052 #11	ENSODEG00000016813	ENSODEG00000017047	ENSODEG00000020442	ENSODEG00000016460	ENSODEG00000016654 #17	ENSODEG00000016706 #17	FBXL12 (ENSODEG00000016590) #21	UBL5 (ENSODEG00000016745) #22	ENSODEG00000017428 #23	OLFM2 (ENSODEG00000016646) #24	COL5A3 (ENSODEG00000016907) #25	RDH8 (ENSODEG00000016686) #26	SHFL (ENSODEG00000016467) #28	ANGPTL6 (ENSODEG00000016263) #29	PPAN (ENSODEG00000016743) #30	ENSODEG00000016542 #32	DNMT1 (ENSODEG00000016929) #33	S1PR2 (ENSODEG00000020460) #34	MRPL4 (ENSODEG00000016194) #35	ICAM1 (ENSODEG00000016545) #36	ICAM4 (ENSODEG00000016513) #37	ICAM5 (ENSODEG00000016352)	ENSODEG00000016522
Rodentia_B	ANCESTRAL SPECIES	42				ENSGT00940000154131.e.a.b.a.a.a.b	ENSGT00940000154619.e	ENSGT00940000154131.e.a.b.a.a.a.a	ENSGT00940000153277.A.b.b.a.a.b #11	ENSGT00940000162877 #10	ENSGT00940000153686.`b.b.a	ENSGT00940000153686.`b.b.b	ENSGT00940000153277.A.b.b.a.a.a #11	ENSGT00940000163292.d	ENSGT00940000162380 #17	ENSGT00950000183169.B	ENSGT00390000003354 #21	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000155412.b #26	ENSGT00390000005065 #28	ENSGT00940000160969 #29	ENSGT01030000234518.C.a.a #31	ENSGT00530000064158 #30	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311 #36	ENSGT00940000162431 #37	ENSGT00940000162184
Kangaroo rat	MODERN SPECIES	498										Or7e178 (ENSDORG00000030124) ##11	ENSDORG00000000170	Zfp26 (ENSDORG00000027564)	Zfp266 (ENSDORG00000023837) #17	ENSDORG00000026036	Fbxl12 (ENSDORG00000023371) #21	ENSDORG00000006499 #22	Pin1rt1 (ENSDORG00000006498) #23	Olfm2 (ENSDORG00000006497) #24	Col5a3 (ENSDORG00000014029) #25	Rdh8 (ENSDORG00000014042) #26	ENSDORG00000026660 #28	ENSDORG00000029931 #29	Ppan (ENSDORG00000003829) #30	Eif3g (ENSDORG00000003833) #32	Dnmt1 (ENSDORG00000014116) #33	S1pr2 (ENSDORG00000012785) #34	Mrpl4 (ENSDORG00000003723) #35	Icam1 (ENSDORG00000006170) #36	Icam4 (ENSDORG00000006167) #37	ENSDORG00000024999	Fdx2 (ENSDORG00000010108)
Myomorpha	ANCESTRAL SPECIES	51				ENSGT00940000154131.e.a.b.a.a.a.b	ENSGT00940000154619.e	ENSGT00940000154131.e.a.b.a.a.a.a	ENSGT00940000153277.A.b.b.a.a.b #11	ENSGT00940000162877 #10	ENSGT00940000153686.`b.b.a	ENSGT00940000153686.`b.b.b	ENSGT00940000153277.A.b.b.a.a.a #11	ENSGT00940000163292.d	ENSGT00940000162380 #17	ENSGT00950000183169.B	ENSGT00390000003354 #21	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000155412.b #26	ENSGT00390000005065 #28	ENSGT00940000160969 #29	ENSGT01030000234518.C.a.a #31	ENSGT00530000064158 #30	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311 #36	ENSGT00940000162431 #37	ENSGT00940000162184
Muroidea	ANCESTRAL SPECIES	58		ENSGT00940000154131.e.b	ENSGT00940000154619.f	ENSGT00940000163945	ENSGT00940000154131.e.a.a	ENSGT00940000162532	ENSGT00940000154619.e.c.a	ENSGT00940000154131.e.a.b.a.a.a.a	ENSGT00940000162241 #7	ENSGT00940000163783	ENSGT00940000164232	ENSGT00940000163292.d	ENSGT00940000162380 #17	ENSGT00950000183169.B	ENSGT00390000003354 #21	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000155412.b #26	ENSGT00390000005065 #28	ENSGT00940000160969 #29	ENSGT01030000234518.C.a.a #31	ENSGT00530000064158 #30	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311 #36	ENSGT00940000162431 #37	ENSGT00940000162184
Upper Galilee mountains blind mole rat	MODERN SPECIES	836								ENSNGAG00000020739 #11	ENSNGAG00000001921 #13	Zfp560 (ENSNGAG00000015897)	Zfp26 (ENSNGAG00000020695)	Zfp426 (ENSNGAG00000008341)	Zfp266 (ENSNGAG00000018635) #17	Zfp846 (ENSNGAG00000003315)	Fbxl12 (ENSNGAG00000004623) #21	ENSNGAG00000011465 #22	Pin1 (ENSNGAG00000016256) #23	Olfm2 (ENSNGAG00000017425) #24	Col5a3 (ENSNGAG00000010112) #25	Rdh8 (ENSNGAG00000013222) #26
Muroidea_A	ANCESTRAL SPECIES	23	ENSGT00940000153277.A.b.b.a.a.b #11	ENSGT00940000153686.`b.b.a	ENSGT00940000153686.`b.b.b	ENSGT00940000153277.A.b.b.a.a.a #11	ENSGT00940000153277.A.b.a.b.c.a #11	ENSGT00940000153686.`b.a	ENSGT00940000153277.A.b.a.b.c.b #11	ENSGT00940000153277.B ##11	ENSGT00940000163651 #9	ENSGT00940000163151	ENSGT00940000164232	ENSGT00940000163292.d	ENSGT00940000162380 #17	ENSGT00950000183169.B	ENSGT00390000003354 #21	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000155412.b #26	ENSGT00390000005065 #28	ENSGT00940000160969 #29	ENSGT01030000234518.C.a.a #31	ENSGT00530000064158 #30	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311 #36	ENSGT00940000162431 #37	ENSGT00940000162184
Cricetidae	ANCESTRAL SPECIES	4	ENSGT00940000153686.`b.b.b	ENSGT00940000153686.`b.b.a	ENSGT00940000153277.A.b.b.a.a.b #11	ENSGT00940000153277.A.b.b.a.a.a #11	ENSGT00940000153277.A.b.a.b.c.a #11	ENSGT00940000153686.`b.a	ENSGT00940000153277.A.b.a.b.c.b #11	ENSGT00940000153277.B.d ##11	ENSGT00940000163651 #9	ENSGT00940000163151	ENSGT00940000164232	ENSGT00940000163292.d	ENSGT00940000162380 #17	ENSGT00950000183169.B	ENSGT00390000003354 #21	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000155412.b #26	ENSGT00390000005065 #28	ENSGT00940000160969 #29	ENSGT01030000234518.C.a.a #31	ENSGT00530000064158 #30	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311 #36	ENSGT00940000162431 #37	ENSGT00940000162184
Cricetinae	ANCESTRAL SPECIES	30	ENSGT00940000153277.A.b.b.a.a.b #11	ENSGT00940000153277.A.b.b.a.a.a #11	ENSGT00940000153277.A.b.a.b.c.a #11	ENSGT00940000153686.`b.a	ENSGT00940000153277.A.b.a.b.c.b #11	ENSGT00940000153277.B.d ##11	ENSGT00940000163651 #9	ENSGT00940000163151	ENSGT00940000164232	ENSGT00940000163292.d	ENSGT00940000162380 #17	ENSGT00950000183169.B	ENSGT00390000003354 #21	ENSGT01040000244683	ENSGT00990000205479	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000155412.b #26	ENSGT00390000005065 #28	ENSGT00940000160969 #29	ENSGT00530000064158 #30	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311 #36	ENSGT00940000162431 #37	ENSGT00940000162184	ENSGT00470000042444
Golden Hamster	MODERN SPECIES	700										Zfp560 (ENSMAUG00000007433)	Zfp26 (ENSMAUG00000017074)	Zfp426 (ENSMAUG00000010146)	Zfp266 (ENSMAUG00000000253) #17	Zfp846 (ENSMAUG00000020295)	ENSMAUG00000002861	Ubl5 (ENSMAUG00000000997) #22	Pin1 (ENSMAUG00000000464) #23	Olfm2 (ENSMAUG00000006786) #24	Col5a3 (ENSMAUG00000006118) #25	ENSMAUG00000019806	Shfl (ENSMAUG00000017892) #28	Angptl6 (ENSMAUG00000005463) #29	Ppan (ENSMAUG00000000310) #30	Eif3g (ENSMAUG00000003373) #32	Dnmt1 (ENSMAUG00000019579) #33	S1pr2 (ENSMAUG00000016946) #34	Mrpl4 (ENSMAUG00000013451) #35	Icam1 (ENSMAUG00000006369) #36	Icam4 (ENSMAUG00000002833) #37	Icam5 (ENSMAUG00000001262)	Zglp1 (ENSMAUG00000000170)
Cricetidae_B	ANCESTRAL SPECIES	16	ENSGT00940000162241 #7	ENSGT00940000163783	ENSGT00940000162877.f #10	ENSGT00940000153686.`b.b.b	ENSGT00940000153277.A.b.a.b.c.a #11	ENSGT00940000153686.`b.a	ENSGT00940000153277.A.b.a.b.c.b #11	ENSGT00940000153277.B.d ##11	ENSGT00940000163651 #9	ENSGT00940000163151	ENSGT00940000164232	ENSGT00940000163292.d	ENSGT00940000162380 #17	ENSGT00950000183169.B	ENSGT00390000003354 #21	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000155412.b #26	ENSGT00390000005065 #28	ENSGT00940000160969 #29	ENSGT01030000234518.C.a.a #31	ENSGT00530000064158 #30	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311 #36	ENSGT00940000162431 #37	ENSGT00940000162184
Northern American deer mouse	DUPLICATION
Northern American deer mouse	MODERN SPECIES	14	ENSPEMG00000019039	Hs1bp3 (ENSPEMG00000001400)	Rhob (ENSPEMG00000013485)	Slc7a15 (ENSPEMG00000009942)	Pum2 (ENSPEMG00000008357)	ENSPEMG00000024635	Sdc1 (ENSPEMG00000010998)	Laptm4a (ENSPEMG00000015789)	Matn3 (ENSPEMG00000017106)	Wdr35 (ENSPEMG00000004790)	Ttc32 (ENSPEMG00000027871)	Osr1 (ENSPEMG00000008344)	Nt5c1b (ENSPEMG00000013187)	Rdh14 (ENSPEMG00000018416)	ENSPEMG00000000184	ENSPEMG00000025389 #22	Kcns3 (ENSPEMG00000011462)	ENSPEMG00000007987	Msgn1 (ENSPEMG00000007522)	Gen1 (ENSPEMG00000001855)	ENSPEMG00000024461	Vsnl1 (ENSPEMG00000028838)	ENSPEMG00000027568	Cyria (ENSPEMG00000025578)	Mycn (ENSPEMG00000014767)	ENSPEMG00000027724	Ddx1 (ENSPEMG00000016389)	Nbas (ENSPEMG00000000126)	Lratd1 (ENSPEMG00000027364)	ENSPEMG00000030202	Trib2 (ENSPEMG00000027972)
Northern American deer mouse	MODERN SPECIES	22	Cacna2d3 (ENSPEMG00000014967)	Wnt5a (ENSPEMG00000030305)	Erc2 (ENSPEMG00000007673)	ENSPEMG00000030335	Ccdc66 (ENSPEMG00000000420)	Tasor (ENSPEMG00000023750)	ENSPEMG00000028020	Arhgef3 (ENSPEMG00000008054)	Il17rd (ENSPEMG00000010551)	Hesx1 (ENSPEMG00000025118)	Appl1 (ENSPEMG00000010024)	Asb14 (ENSPEMG00000008349)	Dnah12 (ENSPEMG00000023606)	Pde12 (ENSPEMG00000007259)	Arf4 (ENSPEMG00000012609)	ENSPEMG00000028915 #22	Dennd6a (ENSPEMG00000023698)	Slmap (ENSPEMG00000016271)	ENSPEMG00000026354	ENSPEMG00000025649	Colq (ENSPEMG00000014122)	Hacl1 (ENSPEMG00000024908)	Btd (ENSPEMG00000014118)	ENSPEMG00000030131	ENSPEMG00000014981	Galnt15 (ENSPEMG00000008935)	ENSPEMG00000030669	Flnb (ENSPEMG00000003413)	Dnase1l3 (ENSPEMG00000010743)	Abhd6 (ENSPEMG00000014877)	ENSPEMG00000029189
Northern American deer mouse	MODERN SPECIES	20	Or7d11 (ENSPEMG00000008424)	ENSPEMG00000010414	ENSPEMG00000029897 #11	ENSPEMG00000030392	Or7e177 (ENSPEMG00000027236) #11	Or7e178 (ENSPEMG00000024659) ##11	ENSPEMG00000000647 #9	ENSPEMG00000030281	ENSPEMG00000029248	ENSPEMG00000024432 #17	Zfp26 (ENSPEMG00000016507)	Zfp426 (ENSPEMG00000011985)	Zfp266 (ENSPEMG00000014715) #17	Zfp846 (ENSPEMG00000029414)	Fbxl12 (ENSPEMG00000005521) #21	ENSPEMG00000018867 #22	Pin1 (ENSPEMG00000002291) #23	Olfm2 (ENSPEMG00000005546) #24	Col5a3 (ENSPEMG00000015543) #25	Rdh8 (ENSPEMG00000015325) #26	Shfl (ENSPEMG00000013975) #28	Angptl6 (ENSPEMG00000010885) #29	ENSPEMG00000029942 #31	Ppan (ENSPEMG00000015393) #30	Eif3g (ENSPEMG00000001978) #32	ENSPEMG00000004880 #33	S1pr2 (ENSPEMG00000030885) #34	Mrpl4 (ENSPEMG00000017474) #35	Icam1 (ENSPEMG00000024025) #36	Icam4 (ENSPEMG00000023979) #37	Icam5 (ENSPEMG00000008387)
Prairie vole	DUPLICATION
Prairie vole	MODERN SPECIES	1	Lrrc38 (ENSMOCG00000014237)	ENSMOCG00000016039	Gpr82 (ENSMOCG00000003874)	Gpr34 (ENSMOCG00000016433)	Cask (ENSMOCG00000007637)	Nyx (ENSMOCG00000018188)	Ddx3x (ENSMOCG00000014170)	ENSMOCG00000008046	Usp9x (ENSMOCG00000009609)	E330021D16Rik (ENSMOCG00000006042)	ENSMOCG00000005802	ENSMOCG00000016742	ENSMOCG00000016696	1810030O07Rik (ENSMOCG00000009974)	Atp6ap2 (ENSMOCG00000010803)	ENSMOCG00000009697 #22	ENSMOCG00000021841	ENSMOCG00000021216	ENSMOCG00000010154	ENSMOCG00000007720	Mid1ip1 (ENSMOCG00000009515)	Tspan7 (ENSMOCG00000021984)	Otc (ENSMOCG00000020681)	Rpgr (ENSMOCG00000015129)	Srpx (ENSMOCG00000000503)	Sytl5 (ENSMOCG00000020078)	Dynlt3 (ENSMOCG00000013937)	ENSMOCG00000005328	ENSMOCG00000002347	Xk (ENSMOCG00000021048)	Lancl3 (ENSMOCG00000018888)
Prairie vole	MODERN SPECIES	224																ENSMOCG00000016048 #22	ENSMOCG00000014934	ENSMOCG00000011850
Prairie vole	MODERN SPECIES	81	Ell3 (ENSMOCG00000018455)	ENSMOCG00000002326	Serinc4 (ENSMOCG00000014793)	ENSMOCG00000020172	ENSMOCG00000022884	Wdr76 (ENSMOCG00000013761)	Frmd5 (ENSMOCG00000020852)	Golm2 (ENSMOCG00000013300)	Ctdspl2 (ENSMOCG00000013493)	ENSMOCG00000022505	Spg11 (ENSMOCG00000010865)	Patl2 (ENSMOCG00000015367)	B2m (ENSMOCG00000000289)	Trim69 (ENSMOCG00000008858)	Terb2 (ENSMOCG00000015731)	ENSMOCG00000008799 #22	Sord (ENSMOCG00000020086)	Duox2 (ENSMOCG00000019172)	Duoxa2 (ENSMOCG00000017053)	Duoxa1 (ENSMOCG00000002434)	Duox1 (ENSMOCG00000017608)	Shf (ENSMOCG00000007839)	ENSMOCG00000007140	Gatm (ENSMOCG00000013911)	Spata5l1 (ENSMOCG00000018887)	AA467197 (ENSMOCG00000011759)	Slc30a4 (ENSMOCG00000001105)	Bloc1s6 (ENSMOCG00000011404)	ENSMOCG00000019232	ENSMOCG00000022725	Sema6d (ENSMOCG00000022881)
Prairie vole	MODERN SPECIES	13	ENSMOCG00000012110	ENSMOCG00000019115 #11	Or7d9 (ENSMOCG00000000337)	ENSMOCG00000005283	Zfp317 (ENSMOCG00000000804) #7	Uxt (ENSMOCG00000021659)	Or7e178 (ENSMOCG00000002045) ##11	ENSMOCG00000004563	Zfp560 (ENSMOCG00000007908)	Zfp26 (ENSMOCG00000015724)	ENSMOCG00000017928	Zfp426 (ENSMOCG00000019624)	Zfp266 (ENSMOCG00000010485) #17	Zfp846 (ENSMOCG00000015338)	Fbxl12 (ENSMOCG00000020422) #21	ENSMOCG00000005061 #22	ENSMOCG00000019478	Pin1 (ENSMOCG00000004258) #23	Olfm2 (ENSMOCG00000007618) #24	Col5a3 (ENSMOCG00000004687) #25	Rdh8 (ENSMOCG00000004899) #26	Shfl (ENSMOCG00000012138) #28	Angptl6 (ENSMOCG00000012813) #29	Ppan (ENSMOCG00000016402) #30	ENSMOCG00000016861 #32	Dnmt1 (ENSMOCG00000013903) #33	S1pr2 (ENSMOCG00000013385) #34	Mrpl4 (ENSMOCG00000014755) #35	Icam1 (ENSMOCG00000013230) #36	ENSMOCG00000013950	Icam4 (ENSMOCG00000019163) #37
Murinae	ANCESTRAL SPECIES	3	ENSGT00940000153686.`b.b.a	ENSGT00940000153277.A.b.b.a.a.b #11	ENSGT00940000153686.`b.b.b	ENSGT00940000153277.A.b.b.a.a.a #11	ENSGT00940000153277.A.b.a.b.c.a #11	ENSGT00940000153686.`b.a	ENSGT00940000153277.A.b.a.b.c.b #11	ENSGT00940000153277.B ##11	ENSGT00940000163651 #9	ENSGT00940000163151	ENSGT00940000164232	ENSGT00940000163292.d	ENSGT00940000162380 #17	ENSGT00950000183169.B	ENSGT00390000003354 #21	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000155412.b #26	ENSGT00390000005065 #28	ENSGT00940000160969 #29	ENSGT00530000064158 #30	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311 #36	ENSGT00940000162431 #37	ENSGT00940000162184	ENSGT00470000042444
Mus	ANCESTRAL SPECIES	4	ENSGT00940000162877.c.a #10	ENSGT00940000153686.`b.b.a	ENSGT00940000153277.A.b.b.a.a.b #11	ENSGT00940000153686.`b.b.b	ENSGT00940000153277.A.b.b.a.a.a #11	ENSGT00940000153277.A.b.a.b.c.a #11	ENSGT00940000153686.`b.a	ENSGT00940000153277.A.b.a.b.c.b #11	ENSGT00940000153277.B ##11	ENSGT00940000163151	ENSGT00940000164232	ENSGT00940000163292.d	ENSGT00940000162380 #17	ENSGT00950000183169.B	ENSGT00390000003354 #21	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000155412.b #26	ENSGT00390000005065 #28	ENSGT00940000160969 #29	ENSGT00530000064158 #30	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311 #36	ENSGT00940000162431 #37	ENSGT00940000162184	ENSGT00470000042444
Shrew mouse	MODERN SPECIES	1	Zfp317 (MGP_PahariEiJ_G0014694) #7	MGP_PahariEiJ_G0014695 #10	Or7e170 (MGP_PahariEiJ_G0014696) #10	Or7d10 (MGP_PahariEiJ_G0014697)	Or7e174 (MGP_PahariEiJ_G0014698) #11	MGP_PahariEiJ_G0014699 #11	MGP_PahariEiJ_G0014700 #11	Or7e177 (MGP_PahariEiJ_G0014701) #11	Or7e178 (MGP_PahariEiJ_G0014702) ##11	MGP_PahariEiJ_G0014703	MGP_PahariEiJ_G0014704	Zfp426 (MGP_PahariEiJ_G0014705)	Zfp266 (MGP_PahariEiJ_G0014706) #17	Zfp846 (MGP_PahariEiJ_G0014707)	Fbxl12 (MGP_PahariEiJ_G0014708) #21	MGP_PahariEiJ_G0014709 #22	Pin1 (MGP_PahariEiJ_G0014710) #23	Olfm2 (MGP_PahariEiJ_G0014711) #24	Col5a3 (MGP_PahariEiJ_G0014712) #25	Rdh8 (MGP_PahariEiJ_G0014713) #26	Shfl (MGP_PahariEiJ_G0014714) #28	Angptl6 (MGP_PahariEiJ_G0014715) #29	Ppan (MGP_PahariEiJ_G0014716) #30	Eif3g (MGP_PahariEiJ_G0014717) #32	Dnmt1 (MGP_PahariEiJ_G0014718) #33	S1pr2 (MGP_PahariEiJ_G0014719) #34	Mrpl4 (MGP_PahariEiJ_G0014720) #35	Icam1 (MGP_PahariEiJ_G0014721) #36	Icam4 (MGP_PahariEiJ_G0014722) #37	Icam5 (MGP_PahariEiJ_G0014723)	Zglp1 (MGP_PahariEiJ_G0014724)
Mus_A	ANCESTRAL SPECIES	4	ENSGT00940000153277.A.b.b.a.a.b #11	ENSGT00940000153686.`b.b.b	ENSGT00940000153277.A.b.b.a.a.a #11	ENSGT00940000153277.A.b.a.b.c.a.a #11	ENSGT00940000163651 #9	ENSGT00940000153277.A.b.a.b.c.a.b #11	ENSGT00940000153686.`b.a	ENSGT00940000153277.A.b.a.b.c.b #11	ENSGT00940000153277.B ##11	ENSGT00940000163151	ENSGT00940000164232	ENSGT00940000163292.d	ENSGT00940000162380 #17	ENSGT00950000183169.B	ENSGT00390000003354 #21	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000155412.b #26	ENSGT00390000005065 #28	ENSGT00940000160969 #29	ENSGT00530000064158 #30	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311 #36	ENSGT00940000162431 #37	ENSGT00940000162184	ENSGT00470000042444
Ryukyu mouse	MODERN SPECIES	3	Zc3h14 (MGP_CAROLIEiJ_G0018012)	Ptpn21 (MGP_CAROLIEiJ_G0018011)	Spata7 (MGP_CAROLIEiJ_G0018010)	Kcnk10 (MGP_CAROLIEiJ_G0018009)	Gpr65 (MGP_CAROLIEiJ_G0018008)	Galc (MGP_CAROLIEiJ_G0018007)	Flrt2 (MGP_CAROLIEiJ_G0018006)	Sel1l (MGP_CAROLIEiJ_G0018005)	Ston2 (MGP_CAROLIEiJ_G0018004)	Gtf2a1 (MGP_CAROLIEiJ_G0018003)	Tshr (MGP_CAROLIEiJ_G0018002)	Cep128 (MGP_CAROLIEiJ_G0018001)	MGP_CAROLIEiJ_G0018000	Nrxn3 (MGP_CAROLIEiJ_G0017999)	Adck1 (MGP_CAROLIEiJ_G0017998)	MGP_CAROLIEiJ_G0017997 #22	Snw1 (MGP_CAROLIEiJ_G0017996)	Slirp (MGP_CAROLIEiJ_G0017995)	Sptlc2 (MGP_CAROLIEiJ_G0017993)	Ism2 (MGP_CAROLIEiJ_G0017992)	Ahsa1 (MGP_CAROLIEiJ_G0017991)	Vipas39 (MGP_CAROLIEiJ_G0017990)	Noxred1 (MGP_CAROLIEiJ_G0017989)	Samd15 (MGP_CAROLIEiJ_G0017988)	Tmed8 (MGP_CAROLIEiJ_G0017987)	Gstz1 (MGP_CAROLIEiJ_G0017986)	Pomt2 (MGP_CAROLIEiJ_G0017985)	Ngb (MGP_CAROLIEiJ_G0017984)	Tmem63c (MGP_CAROLIEiJ_G0017983)	Zdhhc22 (MGP_CAROLIEiJ_G0017982)	Cipc (MGP_CAROLIEiJ_G0017981)
Mus_B	ANCESTRAL SPECIES	3	ENSGT00940000153277.A.b.b.a.a.b #11	ENSGT00940000153686.`b.b.b	ENSGT00940000153277.A.b.b.a.a.a #11	ENSGT00940000153277.A.b.a.b.c.a.a #11	ENSGT00940000163651.d #9	ENSGT00940000153277.A.b.a.b.c.a.b #11	ENSGT00940000153686.`b.a	ENSGT00940000153277.A.b.a.b.c.b #11	ENSGT00940000153277.B ##11	ENSGT00940000163151	ENSGT00940000164232	ENSGT00940000163292.d	ENSGT00940000162380 #17	ENSGT00950000183169.B	ENSGT00390000003354 #21	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000155412.b #26	ENSGT00390000005065 #28	ENSGT00940000160969 #29	ENSGT00530000064158 #30	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311 #36	ENSGT00940000162431 #37	ENSGT00940000162184	ENSGT00470000042444
Mus_C	ANCESTRAL SPECIES	8	ENSGT00940000153277.A.b.b.a.a.b #11	ENSGT00940000153686.`b.b.b	ENSGT00940000153277.A.b.b.a.a.a #11	ENSGT00940000153277.A.b.a.b.c.a.a #11	ENSGT00940000163651.d #9	ENSGT00940000153277.A.b.a.b.c.a.b #11	ENSGT00940000153686.`b.a	ENSGT00940000153277.A.b.a.b.c.b #11	ENSGT00940000153277.B ##11	ENSGT00940000163151	ENSGT00940000164232	ENSGT00940000163292.d	ENSGT00940000162380 #17	ENSGT00940000163292.c.a	ENSGT00390000003354 #21	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000155412.b #26	ENSGT00390000005065 #28	ENSGT00940000160969 #29	ENSGT00530000064158 #30	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311 #36	ENSGT00940000162431 #37	ENSGT00940000162184	ENSGT00470000042444
spretus	MODERN SPECIES	18	Or7d10 (MGP_SPRETEiJ_G0032952)	Or7e173 (MGP_SPRETEiJ_G0032953) #11	Or7d11 (MGP_SPRETEiJ_G0032954)	Or7e174 (MGP_SPRETEiJ_G0032955) #11	MGP_SPRETEiJ_G0032956 #11	Or7e176 (MGP_SPRETEiJ_G0032957) #11	Or7d9 (MGP_SPRETEiJ_G0032958)	Or7e177 (MGP_SPRETEiJ_G0032959) #11	Or7e178 (MGP_SPRETEiJ_G0032960) ##11	Zfp560 (MGP_SPRETEiJ_G0032961)	Zfp26 (MGP_SPRETEiJ_G0032962)	Zfp426 (MGP_SPRETEiJ_G0032963)	Zfp266 (MGP_SPRETEiJ_G0032964) #17	MGP_SPRETEiJ_G0032965	Fbxl12 (MGP_SPRETEiJ_G0032966) #21	Ubl5 (MGP_SPRETEiJ_G0032967) #22	Pin1 (MGP_SPRETEiJ_G0032968) #23	Olfm2 (MGP_SPRETEiJ_G0032969) #24	Col5a3 (MGP_SPRETEiJ_G0032970) #25	Rdh8 (MGP_SPRETEiJ_G0032971) #26	Shfl (MGP_SPRETEiJ_G0032972) #28	Angptl6 (MGP_SPRETEiJ_G0032973) #29	Ppan (MGP_SPRETEiJ_G0032974) #30	Eif3g (MGP_SPRETEiJ_G0032975) #32	Dnmt1 (MGP_SPRETEiJ_G0032976) #33	S1pr2 (MGP_SPRETEiJ_G0032977) #34	Mrpl4 (MGP_SPRETEiJ_G0032978) #35	Icam1 (MGP_SPRETEiJ_G0032979) #36	Icam4 (MGP_SPRETEiJ_G0032980) #37	Icam5 (MGP_SPRETEiJ_G0032981)	Zglp1 (MGP_SPRETEiJ_G0032982)
Steppe mouse	DUPLICATION
Steppe mouse	MODERN SPECIES	3115					Or7e176 (ENSMSIG00000018169) #11	Or7d9 (ENSMSIG00000018161)	Or7e177 (ENSMSIG00000018139) #11	Or7e178 (ENSMSIG00000018136) ##11	Zfp560 (ENSMSIG00000018126)	Zfp26 (ENSMSIG00000018099)	Zfp426 (ENSMSIG00000017986)	Zfp266 (ENSMSIG00000017958) #17	ENSMSIG00000017949	ENSMSIG00000017921	Fbxl12 (ENSMSIG00000017903) #21	Ubl5 (ENSMSIG00000017855) #22	Pin1 (ENSMSIG00000017849) #23	Olfm2 (ENSMSIG00000017812) #24	Col5a3 (ENSMSIG00000017680) #25	Rdh8 (ENSMSIG00000017665) #26	Shfl (ENSMSIG00000017630) #28	Angptl6 (ENSMSIG00000017615) #29	Ppan (ENSMSIG00000017577) #30	Eif3g (ENSMSIG00000017537) #32	Dnmt1 (ENSMSIG00000017200) #33	S1pr2 (ENSMSIG00000017197) #34	Mrpl4 (ENSMSIG00000017179) #35	Icam1 (ENSMSIG00000017165) #36	Icam4 (ENSMSIG00000017145) #37	Icam5 (ENSMSIG00000017102)	Zglp1 (ENSMSIG00000017087)
Steppe mouse	MODERN SPECIES	594																ENSMSIG00000007475 #22
Mouse	DUPLICATION
Mouse	MODERN SPECIES	18	Or7d11 (ENSMUSG00000044454)	Or7e174 (ENSMUSG00000044106) #11	Or7e175 (ENSMUSG00000058491) #11	Or8b12i (ENSMUSG00000066899) #9	Or7h8 (ENSMUSG00000061457) #9	Or7e176 (ENSMUSG00000066897) #11	Or7d9 (ENSMUSG00000059623)	Or7e177 (ENSMUSG00000049028) #11	Or7e178 (ENSMUSG00000066896) ##11	Zfp560 (ENSMUSG00000045519)	Zfp26 (ENSMUSG00000063108)	Zfp426 (ENSMUSG00000059475)	Zfp266 (ENSMUSG00000060510) #17	Zfp846 (ENSMUSG00000058192)	Fbxl12 (ENSMUSG00000066892) #21	Ubl5 (ENSMUSG00000084786) #22	Pin1 (ENSMUSG00000032171) #23	Olfm2 (ENSMUSG00000032172) #24	Col5a3 (ENSMUSG00000004098) #25	Rdh8 (ENSMUSG00000053773) #26	Shfl (ENSMUSG00000038884) #28	Angptl6 (ENSMUSG00000038742) #29	Ppan (ENSMUSG00000004100) #30	Eif3g (ENSMUSG00000070319) #32	Dnmt1 (ENSMUSG00000004099) #33	S1pr2 (ENSMUSG00000043895) #34	Mrpl4 (ENSMUSG00000003299) #35	Icam1 (ENSMUSG00000037405) #36	Icam4 (ENSMUSG00000001014) #37	Icam5 (ENSMUSG00000032174)	Zglp1 (ENSMUSG00000079681)
Mouse	DUPLICATION
Mouse	MODERN SPECIES	3	Dio2 (ENSMUSG00000007682)	Nrxn3 (ENSMUSG00000066392)	Adck1 (ENSMUSG00000021044)	Eif1ad15 (ENSMUSG00000093847)	Eif1ad7 (ENSMUSG00000079029)	Eif1ad10 (ENSMUSG00000095799)	Pramel51 (ENSMUSG00000066027)	Eif1ad18 (ENSMUSG00000114075)	Eif1ad11 (ENSMUSG00000095717)	Eif1ad16 (ENSMUSG00000096803)	Eif1ad17 (ENSMUSG00000096049)	Gm2042 (ENSMUSG00000096276)	Eif1ad14 (ENSMUSG00000096619)	Eif1ad4 (ENSMUSG00000113971)	Eif1ad3 (ENSMUSG00000072905)	Ubl5c (ENSMUSG00000113951) #22	Eif1ad2 (ENSMUSG00000079031)	Eif1ad13 (ENSMUSG00000113201)	Eif1ad19 (ENSMUSG00000095724)	Ubl5b (ENSMUSG00000113489) #22	Eif1ad6 (ENSMUSG00000092019)	Oog1 (ENSMUSG00000096576)	Eif1ad8 (ENSMUSG00000079034)	Eif1ad12 (ENSMUSG00000113805)	Snw1 (ENSMUSG00000021039)	Slirp (ENSMUSG00000021040)	Alkbh1 (ENSMUSG00000079036)	Sptlc2 (ENSMUSG00000021036)	Ism2 (ENSMUSG00000050671)	Ahsa1 (ENSMUSG00000021037)	Vipas39 (ENSMUSG00000021038)
Mouse	MODERN SPECIES	3	Eif1ad7 (ENSMUSG00000079029)	Eif1ad10 (ENSMUSG00000095799)	Pramel51 (ENSMUSG00000066027)	Eif1ad18 (ENSMUSG00000114075)	Eif1ad11 (ENSMUSG00000095717)	Eif1ad16 (ENSMUSG00000096803)	Eif1ad17 (ENSMUSG00000096049)	Gm2042 (ENSMUSG00000096276)	Eif1ad14 (ENSMUSG00000096619)	Eif1ad4 (ENSMUSG00000113971)	Eif1ad3 (ENSMUSG00000072905)	Ubl5c (ENSMUSG00000113951) #22	Eif1ad2 (ENSMUSG00000079031)	Eif1ad13 (ENSMUSG00000113201)	Eif1ad19 (ENSMUSG00000095724)	Ubl5b (ENSMUSG00000113489) #22	Eif1ad6 (ENSMUSG00000092019)	Oog1 (ENSMUSG00000096576)	Eif1ad8 (ENSMUSG00000079034)	Eif1ad12 (ENSMUSG00000113805)	Snw1 (ENSMUSG00000021039)	Slirp (ENSMUSG00000021040)	Alkbh1 (ENSMUSG00000079036)	Sptlc2 (ENSMUSG00000021036)	Ism2 (ENSMUSG00000050671)	Ahsa1 (ENSMUSG00000021037)	Vipas39 (ENSMUSG00000021038)	Noxred1 (ENSMUSG00000072919)	Samd15 (ENSMUSG00000090812)	Tmed8 (ENSMUSG00000034111)	Gstz1 (ENSMUSG00000021033)
Lesser Egyptian jerboa	DUPLICATION
Lesser Egyptian jerboa	MODERN SPECIES	311																ENSJJAG00000011674 #22
Lesser Egyptian jerboa	MODERN SPECIES	212								Ndufa4 (ENSJJAG00000016866)	ENSJJAG00000011830	Phf14 (ENSJJAG00000016257)	Thsd7a (ENSJJAG00000013811)	ENSJJAG00000012032	Vwde (ENSJJAG00000010406)	ENSJJAG00000019869	Tmem168 (ENSJJAG00000019830)	ENSJJAG00000011908 #22	Bmt2 (ENSJJAG00000018789)	Gpr85 (ENSJJAG00000018636)
Lesser Egyptian jerboa	MODERN SPECIES	143												ENSJJAG00000014205	Zfp266 (ENSJJAG00000014866) #17	Zfp426 (ENSJJAG00000021796)	Fbxl12 (ENSJJAG00000022996) #21	ENSJJAG00000023197 #22	ENSJJAG00000000532	Pin1rt1 (ENSJJAG00000000978) #23	Olfm2 (ENSJJAG00000009175) #24	Col5a3 (ENSJJAG00000012410) #25	Rdh8 (ENSJJAG00000017092) #26	Shfl (ENSJJAG00000018496) #28	Angptl6 (ENSJJAG00000018763) #29	Ppan (ENSJJAG00000016362) #30	Eif3g (ENSJJAG00000017602) #32	Dnmt1 (ENSJJAG00000021067) #33	ENSJJAG00000009832	S1pr2 (ENSJJAG00000013342) #34	ENSJJAG00000013403	Mrpl4 (ENSJJAG00000010573) #35	Icam1 (ENSJJAG00000014180) #36
Lagomorpha	ANCESTRAL SPECIES	141												ENSGT00940000164232.b	ENSGT00940000163151	ENSGT00940000162380 #17	ENSGT00390000003354 #21	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000155412.b #26	ENSGT00940000164135 #27	ENSGT00390000005065 #28	ENSGT00940000160969 #29	ENSGT00530000064158 #30	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311 #36	ENSGT00940000162431 #37	ENSGT00940000162184
Rabbit	MODERN SPECIES	566			ENSOCUG00000037530 ##11	ENSOCUG00000027735 #9	ENSOCUG00000027713 #12	ZNF699 (ENSOCUG00000029223) #13	ZNF266 (ENSOCUG00000033882) #17	ENSOCUG00000029594	ENSOCUG00000029473	ENSOCUG00000029276	ZNF426 (ENSOCUG00000003251)	ENSOCUG00000006857 #17	ENSOCUG00000029168	ENSOCUG00000036296	FBXL12 (ENSOCUG00000010381) #21	UBL5 (ENSOCUG00000029004) #22	ENSOCUG00000037613 #23	OLFM2 (ENSOCUG00000004707) #24	COL5A3 (ENSOCUG00000014857) #25	RDH8 (ENSOCUG00000011468) #26	ENSOCUG00000010097 #27	SHFL (ENSOCUG00000004728) #28	ENSOCUG00000023214 #31	S1PR2 (ENSOCUG00000025826) #34	ENSOCUG00000029187 #35	ICAM1 (ENSOCUG00000029644) #36	ENSOCUG00000023156	RAVER1 (ENSOCUG00000020918)	ICAM3 (ENSOCUG00000027745)	TYK2 (ENSOCUG00000014816)
Pika	MODERN SPECIES	9525																UBL5 (ENSOPRG00000013412) #22
Primates	ANCESTRAL SPECIES	18	ENSGT00940000163146	ENSGT00940000162241 #7	ENSGT00940000164306 #8	ENSGT00940000156425 #12	ENSGT00940000153686	ENSGT00940000153277.A.a #11	ENSGT00940000163210 #13	ENSGT00940000164004 #14	ENSGT00940000163463 #15	ENSGT00940000162380 #17	ENSGT00940000164683	ENSGT00940000163292	ENSGT00940000163151	ENSGT00940000163958 #20	ENSGT00390000003354 #21	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000155412.b #26	ENSGT00940000164135 #27	ENSGT00390000005065 #28	ENSGT00940000160969 #29	ENSGT00530000064158 #30	ENSGT01030000234518.C.a.a #31	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT00940000172524	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311 #36
Strepsirrhini	ANCESTRAL SPECIES	28	ENSGT00950000183036.b	ENSGT00940000162948	ENSGT00390000014215	ENSGT00390000000427	ENSGT00940000157375	ENSGT00940000154146.b.b.b	ENSGT00940000163210 #13	ENSGT00940000164004 #14	ENSGT00940000163463 #15	ENSGT00940000162380 #17	ENSGT00940000164683	ENSGT00940000163292	ENSGT00940000163151	ENSGT00940000163958 #20	ENSGT00390000003354 #21	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000155412.b #26	ENSGT00940000164135 #27	ENSGT00390000005065 #28	ENSGT00940000160969 #29	ENSGT00530000064158 #30	ENSGT01030000234518.C.a.a #31	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311 #36	ENSGT00940000162431 #37
Bushbaby	DUPLICATION
Bushbaby	DUPLICATION
Bushbaby	DUPLICATION
Bushbaby	MODERN SPECIES	180						ENSOGAG00000002881	GPM6B (ENSOGAG00000002878)	OFD1 (ENSOGAG00000002873)	ENSOGAG00000002870	RAB9A (ENSOGAG00000002868)	TCEANC (ENSOGAG00000002867)	EGFL6 (ENSOGAG00000002863)	TLR8 (ENSOGAG00000029799)	TLR7 (ENSOGAG00000016092)	PRPS2 (ENSOGAG00000016087)	ENSOGAG00000027467 #22	FRMPD4 (ENSOGAG00000008378)	ENSOGAG00000028835	MSL3 (ENSOGAG00000005030)	AMELX (ENSOGAG00000034697)	ARHGAP6 (ENSOGAG00000003545)	HCCS (ENSOGAG00000003543)	ENSOGAG00000034817	MID1 (ENSOGAG00000014951)	ENSOGAG00000033369	CLCN4 (ENSOGAG00000014456)	WWC3 (ENSOGAG00000016711)	ENSOGAG00000001498	ENSOGAG00000006267	SHROOM2 (ENSOGAG00000026896)	GPR143 (ENSOGAG00000024603)
Bushbaby	MODERN SPECIES	516																ENSOGAG00000034410 #22	ENSOGAG00000028405
Bushbaby	MODERN SPECIES	294	IP6K2 (ENSOGAG00000006819)	PRKAR2A (ENSOGAG00000006822)	SLC25A20 (ENSOGAG00000001847)	ARIH2 (ENSOGAG00000002263)	P4HTM (ENSOGAG00000003931)	WDR6 (ENSOGAG00000003935)	DALRD3 (ENSOGAG00000003937)	NDUFAF3 (ENSOGAG00000003941)	IMPDH2 (ENSOGAG00000003945)	QRICH1 (ENSOGAG00000033740)	QARS1 (ENSOGAG00000003954)	USP19 (ENSOGAG00000003957)	LAMB2 (ENSOGAG00000003963)	CCDC71 (ENSOGAG00000015471)	KLHDC8B (ENSOGAG00000003967)	ENSOGAG00000034043 #22	IHO1 (ENSOGAG00000029823)	ENSOGAG00000029272	C3orf62 (ENSOGAG00000001876)	USP4 (ENSOGAG00000001877)	GPX1 (ENSOGAG00000001880)	ENSOGAG00000028489	TCTA (ENSOGAG00000001882)	AMT (ENSOGAG00000001884)	NICN1 (ENSOGAG00000001885)	DAG1 (ENSOGAG00000014849)	BSN (ENSOGAG00000025887)	APEH (ENSOGAG00000011788)	MST1 (ENSOGAG00000011794)	RNF123 (ENSOGAG00000011796)	AMIGO3 (ENSOGAG00000024741)
Bushbaby	MODERN SPECIES	148	FBXL7 (ENSOGAG00000003172)	ENSOGAG00000024319	ANKH (ENSOGAG00000006664)	OTULIN (ENSOGAG00000008440)	OTULINL (ENSOGAG00000014270)	TRIO (ENSOGAG00000014252)	DNAH5 (ENSOGAG00000009433)	CTNND2 (ENSOGAG00000005411)	ENSOGAG00000034923	ANKRD33B (ENSOGAG00000009776)	ROPN1L (ENSOGAG00000002306)	MARCHF6 (ENSOGAG00000002304)	CMBL (ENSOGAG00000016909)	CCT5 (ENSOGAG00000029948)	ATPSCKMT (ENSOGAG00000003583)	ENSOGAG00000024134 #22	ENSOGAG00000031227	TAS2R1 (ENSOGAG00000016076)	SEMA5A (ENSOGAG00000016380)	MTRR (ENSOGAG00000001029)	FASTKD3 (ENSOGAG00000001028)	CFAP90 (ENSOGAG00000028915)	ADCY2 (ENSOGAG00000001027)
Lemuriformes	ANCESTRAL SPECIES	35	ENSGT00950000183036.b	ENSGT00940000162948	ENSGT00390000014215	ENSGT00390000000427	ENSGT00940000157375	ENSGT00940000154146.b.b.b	ENSGT00940000163210 #13	ENSGT00940000164004 #14	ENSGT00940000163463 #15	ENSGT00940000162380 #17	ENSGT00940000164683	ENSGT00940000163292	ENSGT00940000163151	ENSGT00940000163958 #20	ENSGT00390000003354 #21	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000155412.b #26	ENSGT00940000164135 #27	ENSGT00390000005065 #28	ENSGT00940000160969 #29	ENSGT00530000064158 #30	ENSGT01030000234518.C.a.a #31	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311 #36	ENSGT00940000162431 #37
Mouse lemur	MODERN SPECIES	16	XAB2 (ENSMICG00000010546)	CAMSAP3 (ENSMICG00000000437)	PNPLA6 (ENSMICG00000003776)	ZNF358 (ENSMICG00000011673)	TEX45 (ENSMICG00000003762)	PEX11G (ENSMICG00000013977)	ARHGEF18 (ENSMICG00000013937)	ENSMICG00000043600	ZNF699 (ENSMICG00000044283) #13	ZNF177 (ENSMICG00000004189) #15	ZNF266 (ENSMICG00000045643) #17	ZNF560 (ENSMICG00000033101)	ZNF121 (ENSMICG00000032248)	ZNF846 (ENSMICG00000033313) #20	FBXL12 (ENSMICG00000033575) #21	UBL5 (ENSMICG00000001992) #22	PIN1 (ENSMICG00000043503) #23	OLFM2 (ENSMICG00000002003) #24	COL5A3 (ENSMICG00000006871) #25	RDH8 (ENSMICG00000006911) #26	SHFL (ENSMICG00000029284) #28	ANGPTL6 (ENSMICG00000031653) #29	PPAN (ENSMICG00000047321) #30	P2RY11 (ENSMICG00000006915) #31	EIF3G (ENSMICG00000006936) #32	DNMT1 (ENSMICG00000010231) #33	S1PR2 (ENSMICG00000029506) #34	MRPL4 (ENSMICG00000010267) #35	ICAM1 (ENSMICG00000047282) #36	ICAM4 (ENSMICG00000010290) #37	ICAM5 (ENSMICG00000010301)
Lemuriformes_a	ANCESTRAL SPECIES	25	ENSGT00950000183036.b	ENSGT00940000162948	ENSGT00390000014215	ENSGT00390000000427	ENSGT00940000157375	ENSGT00940000154146.b.b.b	ENSGT00940000163210 #13	ENSGT00940000164004 #14	ENSGT00940000163463 #15	ENSGT00940000162380 #17	ENSGT00940000164683	ENSGT00940000163292	ENSGT00940000163151	ENSGT00940000163958 #20	ENSGT00390000003354 #21	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000155412.b #26	ENSGT00940000164135 #27	ENSGT00390000005065 #28	ENSGT00940000160969 #29	ENSGT00530000064158 #30	ENSGT01030000234518.C.a.a #31	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311 #36	ENSGT00940000162431 #37
Greater bamboo lemur	MODERN SPECIES	48												ZNF426 (ENSPSMG00000020871)	ENSPSMG00000020840	ZNF121 (ENSPSMG00000020833)	FBXL12 (ENSPSMG00000020827) #21	UBL5 (ENSPSMG00000020815) #22	PIN1 (ENSPSMG00000020808) #23	OLFM2 (ENSPSMG00000020782) #24	COL5A3 (ENSPSMG00000020745) #25	RDH8 (ENSPSMG00000020729) #26	ENSPSMG00000020692 #27	SHFL (ENSPSMG00000020508) #28	ANGPTL6 (ENSPSMG00000020500) #29	PPAN (ENSPSMG00000020489) #30	P2RY11 (ENSPSMG00000020479) #31	EIF3G (ENSPSMG00000020476) #32	DNMT1 (ENSPSMG00000020383) #33	S1PR2 (ENSPSMG00000020179) #34	MRPL4 (ENSPSMG00000020172) #35	ZNF627 (ENSPSMG00000020138)	ACP5 (ENSPSMG00000020134)
Coquerels sifaka	MODERN SPECIES	226	PNPLA6 (ENSPCOG00000019630)	MCOLN1 (ENSPCOG00000021666)	ZNF358 (ENSPCOG00000023627)	TEX45 (ENSPCOG00000003057)	PEX11G (ENSPCOG00000019916)	ARHGEF18 (ENSPCOG00000016256)	ENSPCOG00000024157	ZNF699 (ENSPCOG00000023928) #13	ENSPCOG00000016133 #14	ZNF266 (ENSPCOG00000020876) #17	ZNF560 (ENSPCOG00000015133)	ZNF426 (ENSPCOG00000022116)	ZNF121 (ENSPCOG00000020602)	ZNF846 (ENSPCOG00000023619) #20	FBXL12 (ENSPCOG00000013856) #21	UBL5 (ENSPCOG00000019050) #22	PIN1 (ENSPCOG00000017665) #23	OLFM2 (ENSPCOG00000014172) #24	COL5A3 (ENSPCOG00000025910) #25	RDH8 (ENSPCOG00000021964) #26	SHFL (ENSPCOG00000025048) #28	ANGPTL6 (ENSPCOG00000025263) #29	PPAN (ENSPCOG00000027096) #30	P2RY11 (ENSPCOG00000018623) #31	EIF3G (ENSPCOG00000022779) #32	DNMT1 (ENSPCOG00000018383) #33	MRPL4 (ENSPCOG00000016733) #35	ICAM1 (ENSPCOG00000020759) #36	ICAM4 (ENSPCOG00000024827) #37	ICAM5 (ENSPCOG00000028361)	ZGLP1 (ENSPCOG00000016482)
Haplorrhini	ANCESTRAL SPECIES	14	ENSGT00940000154131	ENSGT00940000154619	ENSGT00940000163146	ENSGT00940000156425 #12	ENSGT00940000153686	ENSGT00940000153277.A.a #11	ENSGT00940000163210 #13	ENSGT00940000164004 #14	ENSGT00940000163463 #15	ENSGT00940000162380 #17	ENSGT00940000164683	ENSGT00940000163292	ENSGT00940000163151	ENSGT00940000163958 #20	ENSGT00390000003354 #21	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000155412.b #26	ENSGT00940000164135 #27	ENSGT00390000005065 #28	ENSGT00940000160969 #29	ENSGT00530000064158 #30	ENSGT01030000234518.C.a.a #31	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT00940000172524	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311 #36
Tarsier	MODERN SPECIES	4395														ZNF846 (ENSTSYG00000025832) #20	FBXL12 (ENSTSYG00000012528) #21	UBL5 (ENSTSYG00000004329) #22	PIN1 (ENSTSYG00000034667) #23	OLFM2 (ENSTSYG00000025641) #24	COL5A3 (ENSTSYG00000033321) #25	RDH8 (ENSTSYG00000013769) #26	ANGPTL6 (ENSTSYG00000035617) #29	ENSTSYG00000034845 #30
Simiiformes	ANCESTRAL SPECIES	13	ENSGT00940000162241 #7	ENSGT00940000164306 #8	ENSGT00940000153686	ENSGT00940000153277.A.a #11	ENSGT00940000156425 #12	ENSGT00940000163210 #13	ENSGT00940000164004 #14	ENSGT00940000163463 #15	ENSGT00940000162380 #17	ENSGT00940000164683	ENSGT00940000163292	ENSGT00940000163151	ENSGT00940000162984	ENSGT00940000163958 #20	ENSGT00390000003354 #21	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000155412.b #26	ENSGT00940000164135 #27	ENSGT00390000005065 #28	ENSGT00940000160969 #29	ENSGT00530000064158 #30	ENSGT01030000234518.C.a.a #31	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT00940000172524	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311 #36
Platyrrhini	ANCESTRAL SPECIES	16	ENSGT00950000183005.b.c.a	ENSGT00940000163044	ENSGT00940000163146	ENSGT00940000162241 #7	ENSGT00940000163210 #13	ENSGT00940000164004 #14	ENSGT00940000163463 #15	ENSGT00940000162380 #17	ENSGT00940000164683	ENSGT00940000163292	ENSGT00940000163151	ENSGT00940000162984.c.a	ENSGT00940000162984.d	ENSGT00940000163958 #20	ENSGT00390000003354 #21	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000155412.b #26	ENSGT00390000005065 #28	ENSGT00940000160969 #29	ENSGT00530000064158 #30	ENSGT01030000234518.C.a.a #31	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311 #36	ENSGT00940000162431 #37	ENSGT00940000162184
Cebidae	ANCESTRAL SPECIES	20	ENSGT00950000183005.b.c.a	ENSGT00940000163044	ENSGT00940000163146	ENSGT00940000162241 #7	ENSGT00940000163210 #13	ENSGT00940000164004 #14	ENSGT00940000163463 #15	ENSGT00940000162380 #17	ENSGT00940000164683	ENSGT00940000163292	ENSGT00940000163151	ENSGT00940000162984.c.a	ENSGT00940000162984.d	ENSGT00940000163958 #20	ENSGT00390000003354 #21	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000155412.b #26	ENSGT00390000005065 #28	ENSGT00940000160969 #29	ENSGT00530000064158 #30	ENSGT01030000234518.C.a.a #31	ENSGT00510000047802 #32	ENSGT00390000005100.n #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311 #36	ENSGT00940000162431 #37	ENSGT00940000162184
Marmoset	MODERN SPECIES	14	ZNF558 (ENSCJAG00000011049)	MBD3L1 (ENSCJAG00000022428)	OR1M1 (ENSCJAG00000022913)	OR7G3 (ENSCJAG00000040900)	ZNF317 (ENSCJAG00000006214) #7	ZNF699 (ENSCJAG00000006203) #13	ENSCJAG00000044628 #14	ZNF177 (ENSCJAG00000006188) #15	ZNF266 (ENSCJAG00000006176) #17	ZNF560 (ENSCJAG00000071525)	ZNF426 (ENSCJAG00000006145)	ENSCJAG00000006139	ENSCJAG00000006113	ENSCJAG00000006108 #20	FBXL12 (ENSCJAG00000065299) #21	UBL5 (ENSCJAG00000006097) #22	PIN1 (ENSCJAG00000048251) #23	OLFM2 (ENSCJAG00000006061) #24	COL5A3 (ENSCJAG00000006008) #25	RDH8 (ENSCJAG00000005990) #26	SHFL (ENSCJAG00000005935) #28	ANGPTL6 (ENSCJAG00000005919) #29	PPAN (ENSCJAG00000039296) #30	P2RY11 (ENSCJAG00000039396) #31	EIF3G (ENSCJAG00000005889) #32	DNMT1 (ENSCJAG00000005794) #33	S1PR2 (ENSCJAG00000022912) #34	MRPL4 (ENSCJAG00000005764) #35	ICAM1 (ENSCJAG00000047562) #36	ICAM4 (ENSCJAG00000005760) #37	ICAM5 (ENSCJAG00000005726)
Cebidae_a	ANCESTRAL SPECIES	9	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000160844.a	ENSGT00940000162241 #7	ENSGT00940000163210 #13	ENSGT00940000164004 #14	ENSGT00940000163463 #15	ENSGT00940000162380 #17	ENSGT00940000163292	ENSGT00940000163151	ENSGT00940000162984.c.a	ENSGT00940000162984.d	ENSGT00390000003354 #21	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000155412.b #26	ENSGT00390000005065 #28	ENSGT00940000160969 #29	ENSGT00530000064158 #30	ENSGT01030000234518.C.a.a #31	ENSGT00510000047802 #32	ENSGT00390000005100.n #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311 #36	ENSGT00940000162431 #37	ENSGT00940000162184
Bolivian squirrel monkey	MODERN SPECIES	150	PRAM1 (ENSSBOG00000035353)	ZNF414 (ENSSBOG00000034279)	MYO1F (ENSSBOG00000013487)	ADAMTS10 (ENSSBOG00000033434)	ZNF558 (ENSSBOG00000026599)	ZNF317 (ENSSBOG00000018054) #7	ENSSBOG00000024235	ENSSBOG00000033134	ZNF699 (ENSSBOG00000020395) #13	ZNF177 (ENSSBOG00000022388) #15	ZNF266 (ENSSBOG00000022373) #17	ZNF426 (ENSSBOG00000033589)	ZNF121 (ENSSBOG00000018489)	ENSSBOG00000029865	FBXL12 (ENSSBOG00000032393) #21	UBL5 (ENSSBOG00000030597) #22	PIN1 (ENSSBOG00000021702) #23	OLFM2 (ENSSBOG00000020219) #24	COL5A3 (ENSSBOG00000023264) #25	RDH8 (ENSSBOG00000036009) #26	SHFL (ENSSBOG00000020470) #28	ANGPTL6 (ENSSBOG00000013464) #29	PPAN (ENSSBOG00000026246) #30	P2RY11 (ENSSBOG00000034093) #31	EIF3G (ENSSBOG00000006718) #32	DNMT1 (ENSSBOG00000035240) #33	S1PR2 (ENSSBOG00000017418) #34	MRPL4 (ENSSBOG00000020666) #35	ICAM1 (ENSSBOG00000023183) #36	ICAM4 (ENSSBOG00000016504) #37	ICAM5 (ENSSBOG00000021550)
Capuchin	DUPLICATION
Capuchin	MODERN SPECIES	163													C1orf87 (ENSCCAG00000027605)	CYP2J2 (ENSCCAG00000027549)	HOOK1 (ENSCCAG00000006471)	ENSCCAG00000025106 #22	FGGY (ENSCCAG00000033989)	MYSM1 (ENSCCAG00000029058)	TACSTD2 (ENSCCAG00000032228)	OMA1 (ENSCCAG00000022811)	ENSCCAG00000022246	DAB1 (ENSCCAG00000024787)	C8B (ENSCCAG00000031384)	C8A (ENSCCAG00000024662)	FYB2 (ENSCCAG00000027589)	PRKAA2 (ENSCCAG00000035336)	PLPP3 (ENSCCAG00000001330)	ENSCCAG00000022168	USP24 (ENSCCAG00000027655)	PCSK9 (ENSCCAG00000036131)	ENSCCAG00000030255
Capuchin	MODERN SPECIES	263	MYO1F (ENSCCAG00000035877)	ADAMTS10 (ENSCCAG00000028986)	ZNF558 (ENSCCAG00000012617)	ENSCCAG00000024658	ZNF317 (ENSCCAG00000018106) #7	ZNF699 (ENSCCAG00000034661) #13	ENSCCAG00000027457 #14	ZNF177 (ENSCCAG00000034694) #15	ZNF266 (ENSCCAG00000031253) #17	ENSCCAG00000020760	ZNF426 (ENSCCAG00000035400)	ZNF121 (ENSCCAG00000030925)	ENSCCAG00000027298	ENSCCAG00000037798	FBXL12 (ENSCCAG00000024683) #21	UBL5 (ENSCCAG00000021270) #22	PIN1 (ENSCCAG00000035602) #23	OLFM2 (ENSCCAG00000029162) #24	COL5A3 (ENSCCAG00000035804) #25	RDH8 (ENSCCAG00000030137) #26	SHFL (ENSCCAG00000030128) #28	ANGPTL6 (ENSCCAG00000020269) #29	PPAN (ENSCCAG00000032527) #30	P2RY11 (ENSCCAG00000030662) #31	EIF3G (ENSCCAG00000013164) #32	ENSCCAG00000034652 #33	S1PR2 (ENSCCAG00000019768) #34	MRPL4 (ENSCCAG00000036054) #35	ICAM1 (ENSCCAG00000028706) #36	ICAM4 (ENSCCAG00000035684) #37	ICAM5 (ENSCCAG00000034532)
Catarrhini	ANCESTRAL SPECIES		ENSGT00940000153686	ENSGT00940000153277.A.a #11	ENSGT00940000156425 #12	ENSGT00940000163210 #13	ENSGT00940000164004 #14	ENSGT00940000163463 #15	ENSGT00940000162380 #17	ENSGT00940000164683	ENSGT00940000163292	ENSGT00940000163151	ENSGT00940000162984.b.a	ENSGT00940000162984.a.a	ENSGT00940000162984.a.b	ENSGT00940000163958 #20	ENSGT00390000003354 #21	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000155412.b #26	ENSGT00940000164135 #27	ENSGT00390000005065 #28	ENSGT00940000160969 #29	ENSGT00530000064158 #30	ENSGT01030000234518.C.a.a #31	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT00940000172524	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311 #36
Cercopithecidae	ANCESTRAL SPECIES	17	ENSGT00940000153277.A.a #11	ENSGT00940000156425 #12	ENSGT00940000153686	ENSGT00940000163210 #13	ENSGT00940000164004 #14	ENSGT00940000163463 #15	ENSGT00940000162380 #17	ENSGT00940000164683	ENSGT00940000163292	ENSGT00940000163151	ENSGT00940000162984.b.a	ENSGT00940000162984.a.a	ENSGT00940000162984.a.b	ENSGT00940000163958 #20	ENSGT00390000003354 #21	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000155412.b #26	ENSGT00940000164135 #27	ENSGT00390000005065 #28	ENSGT00940000160969 #29	ENSGT00530000064158 #30	ENSGT01030000234518.C.a.a #31	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT00940000172524	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311 #36
Rhinopithecus	ANCESTRAL SPECIES	5	ENSGT00940000156425 #12	ENSGT00940000153686	ENSGT00940000163210 #13	ENSGT00940000164004 #14	ENSGT00940000163463 #15	ENSGT00940000162380 #17	ENSGT00940000164683	ENSGT00550000074698.k.b.b	ENSGT00940000163292	ENSGT00940000163151	ENSGT00940000162984.b.a	ENSGT00940000162984.a.a	ENSGT00940000162984.a.b	ENSGT00940000163958 #20	ENSGT00390000003354 #21	ENSGT00390000001945 #22
Black snub-nosed monkey	DUPLICATION
Black snub-nosed monkey	MODERN SPECIES	788																ENSRBIG00000024180 #22
Black snub-nosed monkey	MODERN SPECIES	631	ENSRBIG00000023121 #12	ENSRBIG00000029216	ZNF699 (ENSRBIG00000042302) #13	ZNF559 (ENSRBIG00000037439) #14	ZNF177 (ENSRBIG00000035824) #15	ZNF266 (ENSRBIG00000018839) #17	ZNF560 (ENSRBIG00000037288)	ENSRBIG00000032419	ZNF426 (ENSRBIG00000038581)	ZNF121 (ENSRBIG00000038954)	ZNF561 (ENSRBIG00000031324)	ENSRBIG00000042262	ENSRBIG00000003283	ZNF846 (ENSRBIG00000038305) #20	FBXL12 (ENSRBIG00000040385) #21	ENSRBIG00000022614 #22	ENSRBIG00000026975 #23	ENSRBIG00000031874 #24	COL5A3 (ENSRBIG00000044533) #25	ENSRBIG00000037985	SHFL (ENSRBIG00000033517) #28	ANGPTL6 (ENSRBIG00000030201) #29	PPAN (ENSRBIG00000041320) #30	P2RY11 (ENSRBIG00000029626) #31	EIF3G (ENSRBIG00000041693) #32	DNMT1 (ENSRBIG00000038063) #33	ENSRBIG00000031673	S1PR2 (ENSRBIG00000021988) #34	ENSRBIG00000032283 #35	ICAM1 (ENSRBIG00000039899) #36	ICAM4 (ENSRBIG00000042370) #37
Golden snub-nosed monkey	DUPLICATION
Golden snub-nosed monkey	MODERN SPECIES	3047													SLC35F4 (ENSRROG00000032537)	CCDC198 (ENSRROG00000031906)	NAA30 (ENSRROG00000042622)	ENSRROG00000003751 #22
Golden snub-nosed monkey	MODERN SPECIES	2458															PREX1 (ENSRROG00000035821)	ENSRROG00000001690 #22	ARFGEF2 (ENSRROG00000043149)	CSE1L (ENSRROG00000021686)	STAU1 (ENSRROG00000039008)	DDX27 (ENSRROG00000024811)	ENSRROG00000003252	ZNFX1 (ENSRROG00000029056)	ENSRROG00000034942	KCNB1 (ENSRROG00000029157)	PTGIS (ENSRROG00000043304)	ENSRROG00000029732	B4GALT5 (ENSRROG00000028386)	SLC9A8 (ENSRROG00000030129)	SPATA2 (ENSRROG00000045660)	RNF114 (ENSRROG00000038494)	SNAI1 (ENSRROG00000043753)
Cercopithecinae	ANCESTRAL SPECIES	1	ENSGT00940000153686	ENSGT00940000153277.A.a #11	ENSGT00940000156425 #12	ENSGT00940000163210 #13	ENSGT00940000164004 #14	ENSGT00940000163463 #15	ENSGT00940000162380 #17	ENSGT00940000164683	ENSGT00940000163292	ENSGT00940000163151	ENSGT00940000162984.b.a	ENSGT00940000162984.a.a	ENSGT00940000162984.a.b	ENSGT00940000163958 #20	ENSGT00390000003354 #21	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000155412.b #26	ENSGT00940000164135 #27	ENSGT00390000005065 #28	ENSGT00940000160969 #29	ENSGT00530000064158 #30	ENSGT01030000234518.C.a.a #31	ENSGT00510000047802.q.a #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311 #36	ENSGT00940000162431 #37
Vervet Monkey	MODERN SPECIES	25	MBD3L1 (ENSCSAG00000018831)	ENSCSAG00000007814	OR1M1 (ENSCSAG00000018832)	ZNF317 (ENSCSAG00000007764) #7	OR7D2 (ENSCSAG00000018833) #8	ENSCSAG00000018834 #12	ZNF699 (ENSCSAG00000007725) #13	ZNF559 (ENSCSAG00000007695) #14	ZNF177 (ENSCSAG00000007691) #15	ZNF266 (ENSCSAG00000007688) #17	ZNF560 (ENSCSAG00000007675)	ZNF426 (ENSCSAG00000007667)	ZNF121 (ENSCSAG00000007662)	ZNF561 (ENSCSAG00000007656)	ZNF846 (ENSCSAG00000007652) #20	UBL5 (ENSCSAG00000007645) #22	FBXL12 (ENSCSAG00000007639) #21	PIN1 (ENSCSAG00000007637) #23	OLFM2 (ENSCSAG00000007635) #24	COL5A3 (ENSCSAG00000007588) #25	ENSCSAG00000007448	ENSCSAG00000007442 #27	SHFL (ENSCSAG00000007434) #28	ANGPTL6 (ENSCSAG00000007427) #29	PPAN (ENSCSAG00000007423) #30	P2RY11 (ENSCSAG00000007416) #31	ENSCSAG00000007406 #32	DNMT1 (ENSCSAG00000007378) #33	S1PR2 (ENSCSAG00000018835) #34	MRPL4 (ENSCSAG00000007362) #35	ICAM1 (ENSCSAG00000007356) #36
Cercopithecinae_a	ANCESTRAL SPECIES	3	ENSGT00940000153686	ENSGT00940000153277.A.a #11	ENSGT00940000163210 #13	ENSGT00940000164004 #14	ENSGT00940000163463 #15	ENSGT00940000162380 #17	ENSGT00940000164683	ENSGT00940000163292	ENSGT00940000163151	ENSGT00940000162984.b.a	ENSGT00940000162984.a.a	ENSGT00940000162984.a.b	ENSGT00940000163958 #20	ENSGT00390000003354 #21	ENSGT00390000004322.b.h.b	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000155412.b #26	ENSGT00940000164135 #27	ENSGT00390000005065 #28	ENSGT00940000160969 #29	ENSGT00530000064158 #30	ENSGT01030000234518.C.a.a #31	ENSGT00510000047802.r #32	ENSGT00510000047802.q.a #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311 #36
Cercopithecinae_b	ANCESTRAL SPECIES	13	ENSGT00940000153277.A.a #11	ENSGT00940000156425 #12	ENSGT00940000163210 #13	ENSGT00940000164004 #14	ENSGT00940000163463 #15	ENSGT00940000162380 #17	ENSGT00940000164683	ENSGT00940000163292	ENSGT00940000163151	ENSGT00940000162984.b.a	ENSGT00940000162984.a.a	ENSGT00940000162984.a.b	ENSGT00940000163958 #20	ENSGT00390000003354 #21	ENSGT00390000004322.b.h.b	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000155412.b #26	ENSGT00390000005065 #28	ENSGT00940000160969 #29	ENSGT00530000064158 #30	ENSGT01030000234518.C.a.a #31	ENSGT00510000047802.r #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311 #36	ENSGT00940000162431 #37	ENSGT00940000162184
Olive baboon	MODERN SPECIES	12	OR1M1 (ENSPANG00000042449)	ZNF317 (ENSPANG00000007764) #7	OR7D2 (ENSPANG00000030060) #8	OR7E24 (ENSPANG00000040049) #11	ENSPANG00000013863 #13	ZNF559 (ENSPANG00000013225) #14	ZNF177 (ENSPANG00000012124) #15	ZNF266 (ENSPANG00000029279) #17	ZNF560 (ENSPANG00000047310)	ZNF426 (ENSPANG00000017259)	ENSPANG00000009517	ZNF561 (ENSPANG00000035007)	ENSPANG00000047711 #20	FBXL12 (ENSPANG00000003096) #21	ENSPANG00000030257	UBL5 (ENSPANG00000036048) #22	PIN1 (ENSPANG00000008464) #23	OLFM2 (ENSPANG00000004123) #24	COL5A3 (ENSPANG00000010734) #25	ENSPANG00000047295 #27	SHFL (ENSPANG00000029871) #28	ANGPTL6 (ENSPANG00000008463) #29	PPAN (ENSPANG00000005948) #30	DNMT1 (ENSPANG00000001264) #33	S1PR2 (ENSPANG00000010514) #34	MRPL4 (ENSPANG00000001265) #35	ICAM1 (ENSPANG00000009752) #36	ICAM4 (ENSPANG00000011444) #37	ICAM5 (ENSPANG00000017123)	ZGLP1 (ENSPANG00000005034)	FDX2 (ENSPANG00000035899)
Cercopithecinae_d	ANCESTRAL SPECIES	8	ENSGT00940000162241 #7	ENSGT00940000156425 #12	ENSGT00940000163210 #13	ENSGT00940000164004 #14	ENSGT00940000163463 #15	ENSGT00940000162380 #17	ENSGT00940000164683	ENSGT00940000163292	ENSGT00940000163151	ENSGT00940000162984.b.a	ENSGT00940000162984.a.a	ENSGT00940000162984.a.b	ENSGT00940000163958 #20	ENSGT00390000003354 #21	ENSGT00390000004322.b.h.b	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000155412.b #26	ENSGT00390000005065 #28	ENSGT00940000160969 #29	ENSGT00530000064158 #30	ENSGT01030000234518.C.a.a #31	ENSGT00510000047802.r #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311 #36	ENSGT00940000162431 #37	ENSGT00940000162184
Drill	MODERN SPECIES	183															FBXL12 (ENSMLEG00000042931) #21	UBL5 (ENSMLEG00000028569) #22	PIN1 (ENSMLEG00000038056) #23	OLFM2 (ENSMLEG00000035502) #24	COL5A3 (ENSMLEG00000026681) #25	RDH8 (ENSMLEG00000000403) #26	SHFL (ENSMLEG00000041654) #28	ANGPTL6 (ENSMLEG00000039466) #29	PPAN (ENSMLEG00000042991) #30	P2RY11 (ENSMLEG00000033084) #31	EIF3G (ENSMLEG00000035345) #32	DNMT1 (ENSMLEG00000038693) #33	S1PR2 (ENSMLEG00000011240) #34	MRPL4 (ENSMLEG00000041712) #35	ICAM1 (ENSMLEG00000034670) #36	ICAM4 (ENSMLEG00000032689) #37	ICAM5 (ENSMLEG00000040636)
Sooty mangabey	MODERN SPECIES	347					ZNF559 (ENSCATG00000040537) #14	ZNF177 (ENSCATG00000016473) #15	ZNF266 (ENSCATG00000030824) #17	ZNF560 (ENSCATG00000035370)	ZNF426 (ENSCATG00000041277)	ZNF121 (ENSCATG00000032739)	ZNF562 (ENSCATG00000044146)	ENSCATG00000033435	ZNF846 (ENSCATG00000030061) #20	FBXL12 (ENSCATG00000042681) #21	ENSCATG00000021047	UBL5 (ENSCATG00000033567) #22	PIN1 (ENSCATG00000043966) #23	OLFM2 (ENSCATG00000030581) #24	COL5A3 (ENSCATG00000036440) #25	RDH8 (ENSCATG00000032223) #26	SHFL (ENSCATG00000035028) #28	ANGPTL6 (ENSCATG00000037030) #29	PPAN (ENSCATG00000040554) #30	EIF3G (ENSCATG00000031281) #32	P2RY11 (ENSCATG00000041853) #31	DNMT1 (ENSCATG00000031001) #33	S1PR2 (ENSCATG00000018961) #34	ENSCATG00000033090	ICAM1 (ENSCATG00000036475) #36	ICAM4 (ENSCATG00000040339) #37	ICAM5 (ENSCATG00000043572)
Macaca	ANCESTRAL SPECIES	21	ENSGT00940000153277.A.a #11	ENSGT00940000153686.v	ENSGT00940000163210 #13	ENSGT00940000164004 #14	ENSGT00940000163463 #15	ENSGT00940000162380 #17	ENSGT00940000164683	ENSGT00940000163292	ENSGT00940000163151	ENSGT00940000162984.b.a	ENSGT00940000162984.a.a	ENSGT00940000162984.a.b	ENSGT00940000163958 #20	ENSGT00390000003354 #21	ENSGT00390000004322.b.h.b	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000155412.b #26	ENSGT00940000164135 #27	ENSGT00390000005065 #28	ENSGT00940000160969 #29	ENSGT00530000064158 #30	ENSGT01030000234518.C.a.a #31	ENSGT00510000047802.q.a #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311 #36	ENSGT00940000162431 #37
Pig-tailed macaque	MODERN SPECIES	76	ENSMNEG00000031874	OR7D4 (ENSMNEG00000022452)	ZNF699 (ENSMNEG00000043733) #13	ZNF559 (ENSMNEG00000044448) #14	ZNF177 (ENSMNEG00000042801) #15	ZNF266 (ENSMNEG00000040675) #17	ENSMNEG00000041207	ZNF560 (ENSMNEG00000038648)	ZNF426 (ENSMNEG00000038890)	ZNF121 (ENSMNEG00000032321)	ZNF561 (ENSMNEG00000030418)	ZNF562 (ENSMNEG00000021802)	ENSMNEG00000009315	ZNF846 (ENSMNEG00000044074) #20	FBXL12 (ENSMNEG00000043988) #21	UBL5 (ENSMNEG00000040515) #22	PIN1 (ENSMNEG00000034886) #23	OLFM2 (ENSMNEG00000035191) #24	COL5A3 (ENSMNEG00000031289) #25	RDH8 (ENSMNEG00000017486) #26	ENSMNEG00000037564 #27	SHFL (ENSMNEG00000038774) #28	ANGPTL6 (ENSMNEG00000034417) #29	PPAN (ENSMNEG00000031363) #30	P2RY11 (ENSMNEG00000019815) #31	EIF3G (ENSMNEG00000029643) #32	DNMT1 (ENSMNEG00000029351) #33	S1PR2 (ENSMNEG00000027107) #34	MRPL4 (ENSMNEG00000040746) #35	ICAM1 (ENSMNEG00000033129) #36	ICAM4 (ENSMNEG00000043426) #37
Macaca_a	ANCESTRAL SPECIES	1	ENSGT00940000153277.A.a #11	ENSGT00940000163210 #13	ENSGT00940000164004 #14	ENSGT00940000163463 #15	ENSGT00940000162380 #17	ENSGT00940000164683	ENSGT00940000163292	ENSGT00940000163151	ENSGT00940000162984.b.a	ENSGT00940000162984.a.a	ENSGT00940000163505.b.b.b.b.a	ENSGT00940000163958 #20	ENSGT01100000263539.b.a.a.a.a.a.b.b.a.a.a.a.a.b.a.a.b.b.b	ENSGT00390000003354 #21	ENSGT00390000004322.b.h.b	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000155412.b #26	ENSGT00940000164135 #27	ENSGT00390000005065 #28	ENSGT00940000160969 #29	ENSGT00530000064158 #30	ENSGT00510000047802.q.a #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311 #36	ENSGT00940000162431 #37	ENSGT00940000162184
Rhesus	MODERN SPECIES	10	OR7D4 (ENSMMUG00000052663)	OR7E24 (ENSMMUG00000061994) #11	ZNF699 (ENSMMUG00000018887) #13	ZNF559 (ENSMMUG00000018884) #14	ZNF177 (ENSMMUG00000018883) #15	ZNF266 (ENSMMUG00000061661) #17	ZNF560 (ENSMMUG00000021154)	ZNF426 (ENSMMUG00000005694)	ZNF121 (ENSMMUG00000005695)	ENSMMUG00000051928	ZNF562 (ENSMMUG00000020452)	ENSMMUG00000055440	ZNF846 (ENSMMUG00000048803) #20	ENSMMUG00000062422	FBXL12 (ENSMMUG00000007875) #21	UBL5 (ENSMMUG00000007877) #22	ENSMMUG00000028889	PIN1 (ENSMMUG00000061103) #23	OLFM2 (ENSMMUG00000016596) #24	COL5A3 (ENSMMUG00000039980) #25	RDH8 (ENSMMUG00000011205) #26	ENSMMUG00000037639 #27	ENSMMUG00000051353	SHFL (ENSMMUG00000018138) #28	ANGPTL6 (ENSMMUG00000042707) #29	PPAN (ENSMMUG00000017211) #30	EIF3G (ENSMMUG00000017217) #32	DNMT1 (ENSMMUG00000014604) #33	ENSMMUG00000058342	S1PR2 (ENSMMUG00000006586) #34	MRPL4 (ENSMMUG00000001219) #35
Crab-eating macaque	MODERN SPECIES	10	ENSMFAG00000044718	OR7E24 (ENSMFAG00000053134) #11	ZNF699 (ENSMFAG00000003916) #13	ZNF559 (ENSMFAG00000033248) #14	ZNF177 (ENSMFAG00000037498) #15	ZNF266 (ENSMFAG00000032036) #17	ZNF560 (ENSMFAG00000032192)	ZNF426 (ENSMFAG00000030946)	ZNF121 (ENSMFAG00000032217)	ENSMFAG00000031616	ENSMFAG00000061888	ZNF846 (ENSMFAG00000060041) #20	ENSMFAG00000053226	FBXL12 (ENSMFAG00000042424) #21	ENSMFAG00000051369	UBL5 (ENSMFAG00000001146) #22	ENSMFAG00000063155	PIN1 (ENSMFAG00000039816) #23	OLFM2 (ENSMFAG00000002640) #24	COL5A3 (ENSMFAG00000043985) #25	RDH8 (ENSMFAG00000042121) #26	ENSMFAG00000051361 #27	SHFL (ENSMFAG00000041268) #28	ANGPTL6 (ENSMFAG00000038494) #29	PPAN (ENSMFAG00000042854) #30	EIF3G (ENSMFAG00000003465) #32	DNMT1 (ENSMFAG00000023786) #33	S1PR2 (ENSMFAG00000030545) #34	MRPL4 (ENSMFAG00000003526) #35	ENSMFAG00000063966	ENSMFAG00000059527
Hominoidea	ANCESTRAL SPECIES		ENSGT00940000164306 #8	ENSGT00940000153686	ENSGT00940000153277.A.a #11	ENSGT00940000163210 #13	ENSGT00940000164004 #14	ENSGT00940000163463 #15	ENSGT00940000162380 #17	ENSGT00940000164683	ENSGT00940000163292	ENSGT00940000163151	ENSGT00940000162984.b.a	ENSGT00940000162984.a.a	ENSGT00940000162984.a.b	ENSGT00940000163958 #20	ENSGT00390000003354 #21	ENSGT00390000001945 #22	ENSGT00640000091578.n #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000155412.b #26	ENSGT00390000005065 #28	ENSGT00940000160969 #29	ENSGT00530000064158 #30	ENSGT01030000234518.C.a.a #31	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311 #36	ENSGT00940000162431 #37	ENSGT00940000162184
Hominidae	ANCESTRAL SPECIES		ENSGT00940000164306 #8	ENSGT00940000153686.w	ENSGT00940000153277.A.a #11	ENSGT00940000163210 #13	ENSGT00940000164004 #14	ENSGT00940000163463 #15	ENSGT00940000162380 #17	ENSGT00940000164683	ENSGT00940000163292	ENSGT00940000163151	ENSGT00940000162984.b.a	ENSGT00940000162984.a.a	ENSGT00940000162984.a.b	ENSGT00940000163958 #20	ENSGT00390000003354 #21	ENSGT00390000001945 #22	ENSGT00640000091578.n #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000155412.b #26	ENSGT00390000005065 #28	ENSGT00940000160969 #29	ENSGT00530000064158 #30	ENSGT01030000234518.C.a.a #31	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311 #36	ENSGT00940000162431 #37	ENSGT00940000162184
Orangutan	MODERN SPECIES	10	OR7D4 (ENSPPYG00000034246)	ENSPPYG00000035121	OR7E24 (ENSPPYG00000034787) #11	ZNF699 (ENSPPYG00000037902) #13	ZNF559 (ENSPPYG00000009525) #14	ZNF177 (ENSPPYG00000009526) #15	ZNF266 (ENSPPYG00000009527) #17	ZNF560 (ENSPPYG00000009528)	ZNF426 (ENSPPYG00000009529)	ZNF121 (ENSPPYG00000038970)	ZNF561 (ENSPPYG00000009531)	ZNF562 (ENSPPYG00000037171)	ENSPPYG00000009533	ZNF846 (ENSPPYG00000009534) #20	FBXL12 (ENSPPYG00000009535) #21	UBL5 (ENSPPYG00000009536) #22	PIN1 (ENSPPYG00000009537) #23	OLFM2 (ENSPPYG00000009538) #24	COL5A3 (ENSPPYG00000009539) #25	ENSPPYG00000009540	SHFL (ENSPPYG00000009541) #28	ENSPPYG00000009542 #29	PPAN (ENSPPYG00000030196) #30	P2RY11 (ENSPPYG00000033614) #31	EIF3G (ENSPPYG00000009544) #32	DNMT1 (ENSPPYG00000009545) #33	ENSPPYG00000009546 #34	ENSPPYG00000009547 #35	ICAM1 (ENSPPYG00000009548) #36	ENSPPYG00000009549 #37	ICAM5 (ENSPPYG00000031661)
Homo/Pan/Gorilla group	ANCESTRAL SPECIES		ENSGT00940000153277.A.a #11	ENSGT00940000153686.w	ENSGT00940000153686.x	ENSGT00940000163210 #13	ENSGT00940000164004.a #14	ENSGT00940000163463 #15	ENSGT00940000162380 #17	ENSGT00940000164683	ENSGT00940000163292	ENSGT00940000163151	ENSGT00940000162984.b.a	ENSGT00940000162984.a.a	ENSGT00940000162984.a.b	ENSGT00940000163958 #20	ENSGT00390000003354 #21	ENSGT00390000001945 #22	ENSGT00640000091578.n #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000155412.b #26	ENSGT00390000005065 #28	ENSGT00940000160969 #29	ENSGT00530000064158 #30	ENSGT01030000234518.C.a.a #31	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311 #36	ENSGT00940000162431 #37	ENSGT00940000162184
Gorilla	DUPLICATION
Gorilla	MODERN SPECIES	10	OR7G1 (ENSGGOG00000015244)	OR7G3 (ENSGGOG00000006778)	ENSGGOG00000042794	OR7D2 (ENSGGOG00000037214) #8	OR7D4 (ENSGGOG00000043963)	ENSGGOG00000039074	ZNF559 (ENSGGOG00000012935) #14	ZNF177 (ENSGGOG00000011137) #15	ZNF266 (ENSGGOG00000036368) #17	ZNF560 (ENSGGOG00000004579)	ZNF426 (ENSGGOG00000014083)	ZNF121 (ENSGGOG00000009959)	ZNF562 (ENSGGOG00000003476)	ZNF846 (ENSGGOG00000011206) #20	FBXL12 (ENSGGOG00000005995) #21	UBL5 (ENSGGOG00000005999) #22	ENSGGOG00000006008 #23	OLFM2 (ENSGGOG00000006013) #24	COL5A3 (ENSGGOG00000015350) #25	RDH8 (ENSGGOG00000012240) #26	SHFL (ENSGGOG00000016174) #28	ANGPTL6 (ENSGGOG00000016180) #29	PPAN (ENSGGOG00000039459) #30	P2RY11 (ENSGGOG00000005418) #31	EIF3G (ENSGGOG00000005434) #32	DNMT1 (ENSGGOG00000016574) #33	S1PR2 (ENSGGOG00000004193) #34	ENSGGOG00000036529 #35	ICAM1 (ENSGGOG00000005980) #36	ICAM4 (ENSGGOG00000005987) #37	ICAM5 (ENSGGOG00000005992)
Gorilla	MODERN SPECIES		TTC22 (ENSGGOG00000005432)	LEXM (ENSGGOG00000005435)	DHCR24 (ENSGGOG00000010859)	TMEM61 (ENSGGOG00000009578)	BSND (ENSGGOG00000005331)	PCSK9 (ENSGGOG00000003530)	USP24 (ENSGGOG00000004312)	ENSGGOG00000042199	PLPP3 (ENSGGOG00000000309)	PRKAA2 (ENSGGOG00000009076)	FYB2 (ENSGGOG00000009087)	C8A (ENSGGOG00000013973)	C8B (ENSGGOG00000008556)	DAB1 (ENSGGOG00000024836)	OMA1 (ENSGGOG00000001213)	ENSGGOG00000025125 #22	TACSTD2 (ENSGGOG00000012166)	ENSGGOG00000041028	MYSM1 (ENSGGOG00000005238)	FGGY (ENSGGOG00000036583)	HOOK1 (ENSGGOG00000015355)	CYP2J2 (ENSGGOG00000001607)	C1orf87 (ENSGGOG00000011908)	ENSGGOG00000027445	ENSGGOG00000043710	ENSGGOG00000036939	ENSGGOG00000043907	TM2D1 (ENSGGOG00000008515)	PATJ (ENSGGOG00000010129)	ENSGGOG00000023722	L1TD1 (ENSGGOG00000026365)
Homo/Pan group	ANCESTRAL SPECIES		ENSGT00940000153277.A.a #11	ENSGT00940000153686.w	ENSGT00940000153686.x	ENSGT00940000163210 #13	ENSGT00940000164004.a #14	ENSGT00940000163463 #15	ENSGT00940000162380 #17	ENSGT00940000164683	ENSGT00940000163292	ENSGT00940000163151	ENSGT00940000162984.b.a	ENSGT00940000162984.a.a	ENSGT00940000162984.a.b	ENSGT00940000163958 #20	ENSGT00390000003354 #21	ENSGT00390000001945 #22	ENSGT00640000091578.n #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000155412.b #26	ENSGT00390000005065 #28	ENSGT00940000160969 #29	ENSGT00530000064158 #30	ENSGT01030000234518.C.a.a #31	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311 #36	ENSGT00940000162431 #37	ENSGT00940000162184
Human	MODERN SPECIES	10	OR7D2 (ENSG00000188000) #8	OR7D4 (ENSG00000174667)	OR7E24 (ENSG00000237521) #11	ZNF699 (ENSG00000196110) #13	ZNF559 (ENSG00000188321) #14	ZNF559-ZNF177 (ENSG00000270011)	ZNF177 (ENSG00000188629) #15	ZNF266 (ENSG00000174652) #17	ZNF560 (ENSG00000198028)	ZNF426 (ENSG00000130818)	ZNF121 (ENSG00000197961)	ZNF561 (ENSG00000171469)	ZNF562 (ENSG00000171466)	ZNF846 (ENSG00000196605) #20	FBXL12 (ENSG00000127452) #21	UBL5 (ENSG00000198258) #22	PIN1 (ENSG00000127445) #23	OLFM2 (ENSG00000105088) #24	COL5A3 (ENSG00000080573) #25	RDH8 (ENSG00000080511) #26	SHFL (ENSG00000130813) #28	ANGPTL6 (ENSG00000130812) #29	PPAN-P2RY11 (ENSG00000243207)	PPAN (ENSG00000130810) #30	P2RY11 (ENSG00000244165) #31	EIF3G (ENSG00000130811) #32	DNMT1 (ENSG00000130816) #33	S1PR2 (ENSG00000267534) #34	MRPL4 (ENSG00000105364) #35	ICAM1 (ENSG00000090339) #36	ICAM4 (ENSG00000105371) #37
Pan	ANCESTRAL SPECIES	14	ENSGT00940000153277.A.a #11	ENSGT00940000153686.w	ENSGT00940000153686.x	ENSGT00940000163210 #13	ENSGT00940000164004.a #14	ENSGT00940000163463 #15	ENSGT00940000162380 #17	ENSGT00940000164683	ENSGT00940000163292	ENSGT00940000163151	ENSGT00940000162984.b.a	ENSGT00940000162984.a.a	ENSGT00940000162984.a.b	ENSGT00940000163958 #20	ENSGT00390000003354 #21	ENSGT00390000001945 #22	ENSGT00640000091578.n #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000155412.b #26	ENSGT00390000005065 #28	ENSGT00940000160969 #29	ENSGT00530000064158 #30	ENSGT01030000234518.C.a.a #31	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311 #36	ENSGT00940000162431 #37	ENSGT00940000162184
Chimpanzee	MODERN SPECIES	10	ENSPTRG00000048915 #11	OR7D4 (ENSPTRG00000043821)	OR7D1 (ENSPTRG00000029141)	ZNF699 (ENSPTRG00000044966) #13	ZNF559 (ENSPTRG00000010444) #14	ZNF177 (ENSPTRG00000010445) #15	ZNF266 (ENSPTRG00000023219) #17	ZNF560 (ENSPTRG00000010442)	ZNF426 (ENSPTRG00000010447)	ZNF121 (ENSPTRG00000022881)	ZNF561 (ENSPTRG00000040667)	ZNF562 (ENSPTRG00000010449)	ENSPTRG00000010448	ZNF846 (ENSPTRG00000029120) #20	FBXL12 (ENSPTRG00000010450) #21	UBL5 (ENSPTRG00000010451) #22	PIN1 (ENSPTRG00000010452) #23	OLFM2 (ENSPTRG00000010453) #24	COL5A3 (ENSPTRG00000010454) #25	RDH8 (ENSPTRG00000010455) #26	SHFL (ENSPTRG00000010457) #28	ANGPTL6 (ENSPTRG00000010458) #29	PPAN (ENSPTRG00000010459) #30	P2RY11 (ENSPTRG00000040877) #31	EIF3G (ENSPTRG00000010460) #32	DNMT1 (ENSPTRG00000010461) #33	S1PR2 (ENSPTRG00000041995) #34	MRPL4 (ENSPTRG00000010462) #35	ICAM1 (ENSPTRG00000010463) #36	ICAM4 (ENSPTRG00000022810) #37	ICAM5 (ENSPTRG00000010464)
Bonobo	MODERN SPECIES	10	ENSPPAG00000033337 #11	OR7D4 (ENSPPAG00000007019)	ENSPPAG00000020138	ZNF699 (ENSPPAG00000036036) #13	ENSPPAG00000039186 #14	ENSPPAG00000033819 #14	ENSPPAG00000034550 #15	ZNF266 (ENSPPAG00000035485) #17	ZNF426 (ENSPPAG00000027305)	ZNF121 (ENSPPAG00000021595)	ZNF561 (ENSPPAG00000037602)	ZNF562 (ENSPPAG00000033049)	ENSPPAG00000037783	ZNF846 (ENSPPAG00000028977) #20	FBXL12 (ENSPPAG00000034634) #21	UBL5 (ENSPPAG00000025275) #22	ENSPPAG00000032269 #23	OLFM2 (ENSPPAG00000041568) #24	COL5A3 (ENSPPAG00000043767) #25	RDH8 (ENSPPAG00000033700) #26	SHFL (ENSPPAG00000037643) #28	ENSPPAG00000043275 #29	PPAN (ENSPPAG00000039744) #30	P2RY11 (ENSPPAG00000041793) #31	EIF3G (ENSPPAG00000027888) #32	DNMT1 (ENSPPAG00000027461) #33	S1PR2 (ENSPPAG00000019512) #34	ENSPPAG00000041740 #35	ICAM1 (ENSPPAG00000034232) #36	ICAM4 (ENSPPAG00000035190) #37	ICAM5 (ENSPPAG00000030844)
Gibbon	DUPLICATION
Gibbon	MODERN SPECIES	22	ZNF330 (ENSNLEG00000033135)	IL15 (ENSNLEG00000005257)	INPP4B (ENSNLEG00000005284)	USP38 (ENSNLEG00000005343)	GAB1 (ENSNLEG00000005366)	SMARCA5 (ENSNLEG00000005383)	FREM3 (ENSNLEG00000005425)	ENSNLEG00000032234	HHIP (ENSNLEG00000005430)	ANAPC10 (ENSNLEG00000005453)	ENSNLEG00000005460	OTUD4 (ENSNLEG00000005494)	SMAD1 (ENSNLEG00000005537)	MMAA (ENSNLEG00000032493)	ENSNLEG00000029298	ENSNLEG00000018924 #22	C4orf51 (ENSNLEG00000005557)	ZNF827 (ENSNLEG00000005560)	LSM6 (ENSNLEG00000005584)	REELD1 (ENSNLEG00000035386)	SLC10A7 (ENSNLEG00000032871)	ENSNLEG00000036026	POU4F2 (ENSNLEG00000005619)	TTC29 (ENSNLEG00000005624)	EDNRA (ENSNLEG00000005640)	ENSNLEG00000005651	PRMT9 (ENSNLEG00000005657)	ARHGAP10 (ENSNLEG00000005671)	NR3C2 (ENSNLEG00000005677)	IQCM (ENSNLEG00000027154)	ENSNLEG00000027456
Gibbon	MODERN SPECIES		ZNF317 (ENSNLEG00000029885) #7	ENSNLEG00000027399	OR7D2 (ENSNLEG00000019139) #8	ZNF699 (ENSNLEG00000011963) #13	ZNF559 (ENSNLEG00000011969) #14	ZNF177 (ENSNLEG00000011974) #15	ZNF266 (ENSNLEG00000028253) #17	ZNF560 (ENSNLEG00000011981)	ZNF426 (ENSNLEG00000011985)	ZNF121 (ENSNLEG00000011988)	ENSNLEG00000027692	ZNF562 (ENSNLEG00000011989)	ZNF846 (ENSNLEG00000011991) #20	ENSNLEG00000034213	FBXL12 (ENSNLEG00000031752) #21	ENSNLEG00000030828 #22	ENSNLEG00000011999 #23	OLFM2 (ENSNLEG00000012008) #24	COL5A3 (ENSNLEG00000012017) #25	RDH8 (ENSNLEG00000031733) #26	ENSNLEG00000012032 #28	ANGPTL6 (ENSNLEG00000012043) #29	PPAN (ENSNLEG00000012048) #30	P2RY11 (ENSNLEG00000034093) #31	EIF3G (ENSNLEG00000012067) #32	DNMT1 (ENSNLEG00000012092) #33	ENSNLEG00000012155 #35	ICAM1 (ENSNLEG00000012158) #36	ICAM4 (ENSNLEG00000028505) #37	ZGLP1 (ENSNLEG00000029808)	FDX2 (ENSNLEG00000012175)
Atlantogenata	ANCESTRAL SPECIES	41												ENSGT00940000162877 #10	ENSGT00940000156425 #12	ENSGT00940000164510	ENSGT00390000003354 #21	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000155412.b #26	ENSGT00940000164135 #27	ENSGT00390000005065 #28	ENSGT00940000160969 #29	ENSGT00530000064158 #30	ENSGT01030000234518.C.a.a #31	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311 #36	ENSGT00940000162431 #37
Afrotheria	ANCESTRAL SPECIES	38												ENSGT00940000162877 #10	ENSGT00940000156425 #12	ENSGT00940000164510	ENSGT00390000003354 #21	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000155412.b #26	ENSGT00940000164135 #27	ENSGT00390000005065 #28	ENSGT00940000160969 #29	ENSGT00530000064158 #30	ENSGT01030000234518.C.a.a #31	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311 #36	ENSGT00940000162431 #37
Afrotheria_a	ANCESTRAL SPECIES	39												ENSGT00940000162877 #10	ENSGT00940000156425.`b.a #12	ENSGT00940000164510	ENSGT00390000003354 #21	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000155412.b #26	ENSGT00940000164135 #27	ENSGT00390000005065 #28	ENSGT00940000160969 #29	ENSGT00530000064158 #30	ENSGT01030000234518.C.a.a #31	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311 #36	ENSGT00940000162431 #37
Elephant	MODERN SPECIES	270	ENSLAFG00000030372	ENSLAFG00000006049 #12	ENSLAFG00000029630 #12	ENSLAFG00000027974 #10	ENSLAFG00000026595 #10	ENSLAFG00000031006 #10	ENSLAFG00000023279 #12	ENSLAFG00000027953 #10	ENSLAFG00000030829 #12	ENSLAFG00000032039	ENSLAFG00000029508 #12	ENSLAFG00000028902 #12	ENSLAFG00000031801	ENSLAFG00000032730 #12	FBXL12 (ENSLAFG00000000472) #21	UBL5 (ENSLAFG00000012892) #22	PIN1 (ENSLAFG00000007143) #23	OLFM2 (ENSLAFG00000014617) #24	COL5A3 (ENSLAFG00000026566) #25	RDH8 (ENSLAFG00000017417) #26	ENSLAFG00000008805 #27	SHFL (ENSLAFG00000022271) #28	ANGPTL6 (ENSLAFG00000016395) #29	PPAN (ENSLAFG00000016399) #30	P2RY11 (ENSLAFG00000031035) #31	EIF3G (ENSLAFG00000006469) #32	DNMT1 (ENSLAFG00000002818) #33	S1PR2 (ENSLAFG00000028576) #34	MRPL4 (ENSLAFG00000015366) #35	ENSLAFG00000013278 #37	ICAM5 (ENSLAFG00000026578)
Xenarthra	ANCESTRAL SPECIES	1519															ENSGT00390000003354 #21	ENSGT00390000001945 #22	ENSGT00940000159148 #24
Armadillo	MODERN SPECIES	2157															FBXL12 (ENSDNOG00000039725) #21	ENSDNOG00000037465 #22	OLFM2 (ENSDNOG00000033186) #24
Marsupialia	ANCESTRAL SPECIES	1	ENSGT00940000162162.a	ENSGT00550000075201	ENSGT00940000164787	ENSGT01030000234558.D.b	ENSGT00940000154149.b.b	ENSGT00550000075110	ENSGT00940000159323	ENSGT00940000161246	ENSGT00940000160542	ENSGT00940000162643	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064	ENSGT00390000007919	ENSGT00390000003354 #21	ENSGT00390000001945 #22	ENSGT00960000190426	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000155412.b #26	ENSGT00940000164135 #27	ENSGT00390000005065 #28	ENSGT00940000160969 #29	ENSGT00530000064158 #30	ENSGT01030000234518.C.a.a #31	ENSGT00510000047802 #32	ENSGT00390000005100.r.b #33	ENSGT00390000005100.r.a #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35
Marsupialia_b	ANCESTRAL SPECIES	2	ENSGT00550000075201	ENSGT00940000164787	ENSGT00950000182890.D.c.a.a.a.a.b	ENSGT01030000234558.D.b	ENSGT00940000154149.b.b	ENSGT00550000075110	ENSGT00940000159323	ENSGT00940000161246	ENSGT00940000160542	ENSGT00940000162643	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064	ENSGT00390000007919	ENSGT00390000003354 #21	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000155412.b #26	ENSGT00940000164135 #27	ENSGT00390000005065 #28	ENSGT00940000160969 #29	ENSGT00530000064158 #30	ENSGT01030000234518.C.a.a #31	ENSGT00510000047802 #32	ENSGT00390000005100.q #33	ENSGT00390000005100.r.b #33	ENSGT00390000005100.r.a #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35
Diprotodontia	ANCESTRAL SPECIES	20	ENSGT00940000163050	ENSGT00940000164787	ENSGT00950000182890.D.c.a.a.a.a.b	ENSGT01030000234558.D.b	ENSGT00940000154149.b.b	ENSGT00550000075110	ENSGT00940000159323	ENSGT00940000161246	ENSGT00940000160542	ENSGT00940000162643	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064	ENSGT00390000007919	ENSGT00390000003354 #21	ENSGT00390000001945 #22	ENSGT00960000190426	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000155412.b #26	ENSGT00940000164135 #27	ENSGT00390000005065 #28	ENSGT00940000160969 #29	ENSGT00530000064158 #30	ENSGT01030000234518.C.a.a #31	ENSGT00510000047802 #32	ENSGT00390000005100.q #33	ENSGT00390000005100.r.b #33	ENSGT00390000005100.r.a #33	ENSGT01050000244887.A.a.a.b #34
Wallaby	MODERN SPECIES	3268																ENSMEUG00000015506 #22
Diprotodontia_a	ANCESTRAL SPECIES	16	ENSGT00940000163050	ENSGT00940000164787	ENSGT00950000182890.D.c.a.a.a.a.b	ENSGT01030000234558.D.b	ENSGT00940000154149.b.b	ENSGT00550000075110	ENSGT00940000159323	ENSGT00940000161246	ENSGT00940000160542	ENSGT00940000162643	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064	ENSGT00390000007919	ENSGT00390000003354 #21	ENSGT00390000001945 #22	ENSGT00960000190426	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000155412.b #26	ENSGT00940000164135 #27	ENSGT00390000005065 #28	ENSGT00940000160969 #29	ENSGT00530000064158 #30	ENSGT01030000234518.C.a.a #31	ENSGT00510000047802 #32	ENSGT00390000005100.q #33	ENSGT00390000005100.r.b #33	ENSGT00390000005100.r.a #33	ENSGT01050000244887.A.a.a.b #34
Common wonbat	DUPLICATION
Common wonbat	DUPLICATION
Common wonbat	MODERN SPECIES	767																ENSVURG00010024970 #22
Common wonbat	MODERN SPECIES	741																ENSVURG00010017917 #22
Common wonbat	MODERN SPECIES	764	ENSVURG00010024890	ENSVURG00010024891	COLGALT1 (ENSVURG00010024893)	ENSVURG00010024895	PGLS (ENSVURG00010024896)	SLC27A1 (ENSVURG00010024898)	NXNL1 (ENSVURG00010024899)	MVB12A (ENSVURG00010024900)	PBX4 (ENSVURG00010024901)	LPAR2 (ENSVURG00010024902)	GMIP (ENSVURG00010024903)	ATP13A1 (ENSVURG00010024904)	CHCHD5 (ENSVURG00010024905)	ENSVURG00010024906	ENSVURG00010024907 #21	ENSVURG00010024908 #22	ENSVURG00010024910 #21	PIN1 (ENSVURG00010024911) #23	OLFM2 (ENSVURG00010024912) #24	COL5A3 (ENSVURG00010024913) #25	RDH8 (ENSVURG00010024914) #26	ENSVURG00010024915 #27	SHFL (ENSVURG00010024922) #28	ANGPTL6 (ENSVURG00010024924) #29	PPAN (ENSVURG00010024925) #30	P2RY11 (ENSVURG00010024926) #31	EIF3G (ENSVURG00010024928) #32	ENSVURG00010024929 #33	ENSVURG00010024933 #33	S1PR2 (ENSVURG00010024934) #34	MRPL4 (ENSVURG00010024936) #35
koala	DUPLICATION
koala	DUPLICATION
koala	MODERN SPECIES	28	CCK (ENSPCIG00000022691)	EIF1B (ENSPCIG00000016375)	ENSPCIG00000036948	ENSPCIG00000037453	ENSPCIG00000004556	ENSPCIG00000005026	ENSPCIG00000005018	ENSPCIG00000003822	ENSPCIG00000034043	ENSPCIG00000014355	TMC2 (ENSPCIG00000012572)	ENSPCIG00000012575	ENSPCIG00000012582	ENSPCIG00000036695	SLC25A38 (ENSPCIG00000007860)	ENSPCIG00000032234 #22	CCR8 (ENSPCIG00000036945)	CX3CR1 (ENSPCIG00000010400)	CCR4 (ENSPCIG00000010402)	GLB1 (ENSPCIG00000010406)	CRTAP (ENSPCIG00000010418)	SUSD5 (ENSPCIG00000003505)	ENSPCIG00000002097	ENSPCIG00000002108	CDK6 (ENSPCIG00000030740)	ENSPCIG00000026017	ENSPCIG00000034934	RBM48 (ENSPCIG00000026020)	ENSPCIG00000026021	PEX1 (ENSPCIG00000026024)	GATAD1 (ENSPCIG00000037007)
koala	MODERN SPECIES	295														PCDH10 (ENSPCIG00000026375)	ENSPCIG00000019848	ENSPCIG00000035602 #22
koala	MODERN SPECIES	24		ENSPCIG00000030856	ENSPCIG00000018511	ADCK1 (ENSPCIG00000031606)	SNW1 (ENSPCIG00000026811)	ENSPCIG00000026842	ALKBH1 (ENSPCIG00000026843)	SPTLC2 (ENSPCIG00000026846)	ENSPCIG00000026849	AHSA1 (ENSPCIG00000026852)	VIPAS39 (ENSPCIG00000026856)	NOXRED1 (ENSPCIG00000026865)	ENSPCIG00000026867	TMED8 (ENSPCIG00000026869)	GSTZ1 (ENSPCIG00000026873)	ENSPCIG00000036654 #22	POMT2 (ENSPCIG00000026881)	NGB (ENSPCIG00000026888)	TMEM63C (ENSPCIG00000026891)	ZDHHC22 (ENSPCIG00000026906)	CIPC (ENSPCIG00000034204)	IRF2BPL (ENSPCIG00000036236)	ANGEL1 (ENSPCIG00000026915)	ENSPCIG00000026920	ENSPCIG00000026922	VASH1 (ENSPCIG00000026927)	ESRRB (ENSPCIG00000036136)	GPATCH2L (ENSPCIG00000010391)	IFT43 (ENSPCIG00000002595)	TGFB3 (ENSPCIG00000002617)	ENSPCIG00000002659
koala	MODERN SPECIES	58	ENSPCIG00000030715	ENSPCIG00000018897	COLGALT1 (ENSPCIG00000018895)	ENSPCIG00000018889	PGLS (ENSPCIG00000018885)	SLC27A1 (ENSPCIG00000018882)	NXNL1 (ENSPCIG00000018880)	MVB12A (ENSPCIG00000018878)	PBX4 (ENSPCIG00000018874)	LPAR2 (ENSPCIG00000018871)	GMIP (ENSPCIG00000018867)	ATP13A1 (ENSPCIG00000018864)	CHCHD5 (ENSPCIG00000018860)	FBXL12 (ENSPCIG00000018856) #21	ENSPCIG00000037081	ENSPCIG00000018853 #22	PIN1 (ENSPCIG00000033231) #23	OLFM2 (ENSPCIG00000018847) #24	RDH8 (ENSPCIG00000018790) #26	SHFL (ENSPCIG00000018787) #28	ANGPTL6 (ENSPCIG00000033518) #29	PPAN (ENSPCIG00000018786) #30	P2RY11 (ENSPCIG00000018784) #31	EIF3G (ENSPCIG00000018783) #32	ENSPCIG00000033373 #33	ENSPCIG00000018782 #33	ENSPCIG00000018780 #33	S1PR2 (ENSPCIG00000018778) #34	MRPL4 (ENSPCIG00000033688) #35	ENSPCIG00000018769	ENSPCIG00000036585 #37
Tasmanian devil	DUPLICATION
Tasmanian devil	MODERN SPECIES		ENSSHAG00000013568	ENSSHAG00000013059	ENSSHAG00000020902	ENSSHAG00000020939	ENSSHAG00000012223	ENSSHAG00000012038	SLC27A1 (ENSSHAG00000011850)	MVB12A (ENSSHAG00000027018)	NXNL1 (ENSSHAG00000022220)	ENSSHAG00000011298	ENSSHAG00000011222	ENSSHAG00000011113	ENSSHAG00000023300	ENSSHAG00000021526 #21	ENSSHAG00000021142 #22	ENSSHAG00000010974 #22	ENSSHAG00000010840 #23	OLFM2 (ENSSHAG00000010609) #24	ENSSHAG00000009911 #25	RDH8 (ENSSHAG00000026329) #26	ENSSHAG00000009636 #27	SHFL (ENSSHAG00000009453) #28	ANGPTL6 (ENSSHAG00000009395) #29	ENSSHAG00000009305 #30	EIF3G (ENSSHAG00000009231) #32	ENSSHAG00000024917 #33	ENSSHAG00000027218 #33	ENSSHAG00000008894 #33	S1PR2 (ENSSHAG00000028683) #34	MRPL4 (ENSSHAG00000008539) #35	ICAM5 (ENSSHAG00000032328)
Tasmanian devil	MODERN SPECIES		ENSSHAG00000021815	ENSSHAG00000013568	ENSSHAG00000013059	ENSSHAG00000020902	ENSSHAG00000020939	ENSSHAG00000012223	ENSSHAG00000012038	SLC27A1 (ENSSHAG00000011850)	MVB12A (ENSSHAG00000027018)	NXNL1 (ENSSHAG00000022220)	ENSSHAG00000011298	ENSSHAG00000011222	ENSSHAG00000011113	ENSSHAG00000023300	ENSSHAG00000021526 #21	ENSSHAG00000021142 #22	ENSSHAG00000010974 #22	ENSSHAG00000010840 #23	OLFM2 (ENSSHAG00000010609) #24	ENSSHAG00000009911 #25	RDH8 (ENSSHAG00000026329) #26	ENSSHAG00000009636 #27	SHFL (ENSSHAG00000009453) #28	ANGPTL6 (ENSSHAG00000009395) #29	ENSSHAG00000009305 #30	EIF3G (ENSSHAG00000009231) #32	ENSSHAG00000024917 #33	ENSSHAG00000027218 #33	ENSSHAG00000008894 #33	S1PR2 (ENSSHAG00000028683) #34	MRPL4 (ENSSHAG00000008539) #35
Opossum	DUPLICATION
Opossum	MODERN SPECIES	2	ENSMODG00000011626	TRMT1 (ENSMODG00000011619)	ENSMODG00000011593	NFIX (ENSMODG00000011587)	GADD45GIP1 (ENSMODG00000011545)	RAD23A (ENSMODG00000011539)	CALR (ENSMODG00000011530)	FARSA (ENSMODG00000011519)	ENSMODG00000043191	GCDH (ENSMODG00000011508)	KLF1 (ENSMODG00000011491)	DNASE2 (ENSMODG00000011483)	monDomV1R1219 (ENSMODG00000047743)	monDomV1R1220 (ENSMODG00000039528)	ENSMODG00000028680	ENSMODG00000023795 #22	ENSMODG00000045793	ENSMODG00000046640	ENSMODG00000006773	ENSMODG00000023794	ENSMODG00000023793	ENSMODG00000050748	ENSMODG00000006823	ENSMODG00000006837	TBXA2R (ENSMODG00000006844)	ENSMODG00000006869	HMG20B (ENSMODG00000006884)	MFSD12 (ENSMODG00000006897)	ENSMODG00000047578	FZR1 (ENSMODG00000006919)	DOHH (ENSMODG00000006927)
Opossum	MODERN SPECIES	2	ENSMODG00000005272	ENSMODG00000004306	COLGALT1 (ENSMODG00000004372)	ENSMODG00000004391	PGLS (ENSMODG00000004396)	SLC27A1 (ENSMODG00000004430)	ENSMODG00000004453	NXNL1 (ENSMODG00000004441)	PBX4 (ENSMODG00000004459)	LPAR2 (ENSMODG00000004466)	GMIP (ENSMODG00000004677)	ATP13A1 (ENSMODG00000004716)	CHCHD5 (ENSMODG00000024210)	ENSMODG00000024180	ENSMODG00000037657	ENSMODG00000037364 #22	PIN1 (ENSMODG00000004724) #23	OLFM2 (ENSMODG00000040695) #24	RDH8 (ENSMODG00000005019) #26	ENSMODG00000005107 #27	SHFL (ENSMODG00000005120) #28	ANGPTL6 (ENSMODG00000005137) #29	PPAN (ENSMODG00000005158) #30	P2RY11 (ENSMODG00000024209) #31	EIF3G (ENSMODG00000005173) #32	ENSMODG00000005463 #33	DNMT1 (ENSMODG00000048820) #33	S1PR2 (ENSMODG00000028318) #34	MRPL4 (ENSMODG00000005476) #35	ENSMODG00000028933	ICAM5 (ENSMODG00000040312)
Platypus	DUPLICATION
Platypus	MODERN SPECIES	19	ENSOANG00000048660	ORNANAV1R3259 (ENSOANG00000039262)	ENSOANG00000037075	ORNANAV1R3053 (ENSOANG00000040077)	ENSOANG00000047757	ENSOANG00000013609	ENSOANG00000051032	ENSOANG00000021879	ENSOANG00000022333	ORNANAV1R3189 (ENSOANG00000046058)	ENSOANG00000037160	ORNANAV1R3220 (ENSOANG00000044179)	ENSOANG00000008369	ENSOANG00000036138	ENSOANG00000036627	ENSOANG00000043395 #22	ORNANAV1R3181 (ENSOANG00000050539)	ORNANAV1R3043 (ENSOANG00000041644)	ENSOANG00000048489	ENSOANG00000040104	ENSOANG00000036090	ENSOANG00000039787	ENSOANG00000009664	ENSOANG00000014372	ENSOANG00000041955	ENSOANG00000005431	ENSOANG00000015609	ENSOANG00000012145	ENSOANG00000048818	ENSOANG00000043837	ENSOANG00000040269
Platypus	MODERN SPECIES	11	DBX2 (ENSOANG00000048487)	NELL2 (ENSOANG00000044895)	TMEM117 (ENSOANG00000001738)	TWF1 (ENSOANG00000007091)	IRAK4 (ENSOANG00000001905)	PUS7L (ENSOANG00000021234)	ADAMTS20 (ENSOANG00000004962)	PRICKLE1 (ENSOANG00000011364)	PPHLN1 (ENSOANG00000041653)	ZCRB1 (ENSOANG00000038392)	YAF2 (ENSOANG00000050454)	GXYLT1 (ENSOANG00000003428)	PDZRN4 (ENSOANG00000003429)	CNTN1 (ENSOANG00000007366)	LRRK2 (ENSOANG00000011237)	ENSOANG00000042749 #22	SLC2A13 (ENSOANG00000039346)	ENSOANG00000044709	ABCD2 (ENSOANG00000040062)	KIF21A (ENSOANG00000014507)	ENSOANG00000031156	CPNE8 (ENSOANG00000002877)	ENSOANG00000038075	TPRKB (ENSOANG00000050189)	SYT10 (ENSOANG00000038829)	ENSOANG00000043805	PKP2 (ENSOANG00000020593)	ENSOANG00000047335	DNM1L (ENSOANG00000008924)	FGD4 (ENSOANG00000004404)	ENSOANG00000039362
Sauria	ANCESTRAL SPECIES	22	ENSGT01030000234558.D.b	ENSGT00940000154149.b.b	ENSGT00550000075110	ENSGT00940000159323	ENSGT00940000161246	ENSGT00950000183110.a	ENSGT01050000244941.B.c	ENSGT00940000162643	ENSGT00390000011347	ENSGT00940000160542	ENSGT00550000075064	ENSGT00390000007919	ENSGT00940000165858	ENSGT00940000162906.c.b	ENSGT00390000003354 #21	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000161852.y.b	ENSGT00940000159148 #24	ENSGT00940000154535.B	ENSGT00390000005100 #33	ENSGT00940000172524	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000159005	ENSGT00470000042444	ENSGT00940000161143	ENSGT00940000160550	ENSGT00940000159869	ENSGT00390000013443.c	ENSGT00940000159788.b
Archelosauria	ANCESTRAL SPECIES	40	ENSGT01030000234558.D.b	ENSGT00940000154149.b.b	ENSGT00550000075110	ENSGT00940000159323	ENSGT00940000161246	ENSGT00950000183110.a	ENSGT01050000244941.B.c	ENSGT00940000162643	ENSGT00390000011347	ENSGT00940000160542	ENSGT00550000075064	ENSGT00390000007919	ENSGT00940000165858	ENSGT00940000162906.c.b	ENSGT00390000003354 #21	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000161852.y.b	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000154535.C	ENSGT00940000155412.b #26	ENSGT00390000005100 #33	ENSGT00940000172524	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000159005	ENSGT00470000042444	ENSGT00940000161143	ENSGT00940000160550	ENSGT00940000159869
Cryptodira	ANCESTRAL SPECIES	45	ENSGT01030000234558.D.b	ENSGT00940000154149.b.b	ENSGT00550000075110	ENSGT00940000159323	ENSGT00940000161246	ENSGT00950000183110.a	ENSGT01050000244941.B.c	ENSGT00940000162643	ENSGT00390000011347	ENSGT00940000160542	ENSGT00550000075064	ENSGT00390000007919	ENSGT00940000165858	ENSGT00940000162906.c.b	ENSGT00390000003354 #21	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000161852.y.b	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT00940000172524	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000159005	ENSGT00470000042444	ENSGT00940000161143	ENSGT00940000160550	ENSGT00940000159869	ENSGT00390000013443.c
Testudinoidea	ANCESTRAL SPECIES	38	ENSGT01030000234558.D.b	ENSGT00940000154149.b.b	ENSGT00550000075110	ENSGT00940000159323	ENSGT00940000161246	ENSGT00950000183110.a	ENSGT01050000244941.B.c	ENSGT00940000162643	ENSGT00390000011347	ENSGT00940000160542	ENSGT00550000075064	ENSGT00390000007919	ENSGT00940000165858	ENSGT00940000162906.c.b	ENSGT00390000003354 #21	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000161852.y.b	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT00940000172524	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000159005.s.b.b	ENSGT00940000159005.s.a.b	ENSGT00470000042444	ENSGT00940000161143	ENSGT00940000160550	ENSGT00940000159869
Testudinidae	ANCESTRAL SPECIES	89	ENSGT01030000234558.D.b	ENSGT00940000154149.b.b	ENSGT00550000075110	ENSGT00940000159323	ENSGT00940000161246	ENSGT00950000183110.a	ENSGT01050000244941.B.c	ENSGT00940000162643	ENSGT00390000011347	ENSGT00940000160542	ENSGT00550000075064	ENSGT00390000007919	ENSGT00940000165858	ENSGT00940000162906.c.b	ENSGT00390000003354 #21	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000161852.y.b	ENSGT00940000159148 #24
Abingdon island giant tortoise	MODERN SPECIES	841			ENSCABG00000021308	ENSCABG00000021310	NXNL1 (ENSCABG00000021311)	GMIP (ENSCABG00000021313)	LPAR2 (ENSCABG00000021314)	PBX4 (ENSCABG00000021317)	DSN1 (ENSCABG00000021320)	MVB12A (ENSCABG00000021322)	ATP13A1 (ENSCABG00000021336)	ENSCABG00000021345	ENSCABG00000021346	ENSCABG00000021347	FBXL12 (ENSCABG00000021348) #21	UBL5 (ENSCABG00000021349) #22	PIN1 (ENSCABG00000021350) #23	ENSCABG00000021351	SHISA2 (ENSCABG00000021352)	ENSCABG00000021353	ENSCABG00000021355
Goode s thornscrub tortoise	MODERN SPECIES	178	COLGALT1 (ENSGEVG00005021163)	ENSGEVG00005021168	PGLS (ENSGEVG00005021176)	SLC27A1 (ENSGEVG00005021177)	NXNL1 (ENSGEVG00005021182)	GMIP (ENSGEVG00005021187)	LPAR2 (ENSGEVG00005021199)	PBX4 (ENSGEVG00005021203)	DSN1 (ENSGEVG00005021209)	ENSGEVG00005014055	ATP13A1 (ENSGEVG00005014134)	CHCHD5 (ENSGEVG00005014195)	ENSGEVG00005014254	ENSGEVG00005014499	FBXL12 (ENSGEVG00005014521) #21	UBL5 (ENSGEVG00005014544) #22	PIN1 (ENSGEVG00005014565) #23	ENSGEVG00005014588	OLFM2 (ENSGEVG00005014670) #24
Emydidae	ANCESTRAL SPECIES	48	ENSGT01030000234558.D.b	ENSGT00940000154149.b.b	ENSGT00550000075110	ENSGT00940000159323	ENSGT00940000161246	ENSGT00950000183110.a	ENSGT01050000244941.B.c	ENSGT00940000162643	ENSGT00390000011347	ENSGT00940000160542	ENSGT00550000075064	ENSGT00390000007919	ENSGT00940000165858	ENSGT00940000162906.c.b	ENSGT00390000003354 #21	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000161852.y.b	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT00940000172524	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000159005.s.a.a	ENSGT00940000159005.s.a.b	ENSGT00470000042444	ENSGT00940000161143	ENSGT00940000160550	ENSGT00940000159869
painted turtle	MODERN SPECIES	1001	ENSCPBG00000014215	ENSCPBG00000014217	ENSCPBG00000014220	PGLS (ENSCPBG00000014223)	SLC27A1 (ENSCPBG00000014224)	NXNL1 (ENSCPBG00000014227)	GMIP (ENSCPBG00000014229)	LPAR2 (ENSCPBG00000014231)	PBX4 (ENSCPBG00000014233)	DSN1 (ENSCPBG00000014236)	ENSCPBG00000014238	ATP13A1 (ENSCPBG00000014270)	ENSCPBG00000014511	ENSCPBG00000014514	FBXL12 (ENSCPBG00000014516) #21	UBL5 (ENSCPBG00000014517) #22	PIN1 (ENSCPBG00000014519) #23	ENSCPBG00000014523	OLFM2 (ENSCPBG00000014527) #24	ENSCPBG00000014529 #25	ENSCPBG00000014536	ENSCPBG00000014541	RDH8 (ENSCPBG00000014547) #26
Archosauria	ANCESTRAL SPECIES	34	ENSGT01030000234558.D.b	ENSGT00940000154149.b.b	ENSGT00550000075110	ENSGT00940000159323	ENSGT00940000161246	ENSGT00950000183110.a	ENSGT01050000244941.B.c	ENSGT00940000162643	ENSGT00390000011347	ENSGT00940000160542	ENSGT00550000075064	ENSGT00390000007919	ENSGT00940000165858	ENSGT00940000162906.c.b	ENSGT00390000003354 #21	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000161852.y.b	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000154535.C	ENSGT00940000155412.b #26	ENSGT00530000064158 #30	ENSGT01030000234518.C.a.a #31	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000159005	ENSGT00940000161143	ENSGT00940000160550
Aves	ANCESTRAL SPECIES	34	ENSGT01030000234558.D.b	ENSGT00940000154149.b.b	ENSGT00550000075110	ENSGT00940000159323	ENSGT00940000161246	ENSGT00950000183110.a	ENSGT01050000244941.B.c	ENSGT00940000162643	ENSGT00390000011347	ENSGT00940000160542	ENSGT00550000075064	ENSGT00390000007919	ENSGT00940000165858	ENSGT00940000162906.c.b	ENSGT00390000003354 #21	ENSGT00390000001945 #22	ENSGT00960000190426	ENSGT00640000091578 #23	ENSGT00940000161852.y.b	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000154535.C	ENSGT00940000155412.b #26	ENSGT00530000064158 #30	ENSGT01030000234518.C.a.a #31	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000159005	ENSGT00940000161143
Neognathae	ANCESTRAL SPECIES	34	ENSGT01030000234558.D.b	ENSGT00940000154149.b.b	ENSGT00550000075110	ENSGT00940000159323	ENSGT00940000161246	ENSGT00950000183110.a	ENSGT01050000244941.B.c	ENSGT00940000162643	ENSGT00390000011347	ENSGT00940000160542	ENSGT00550000075064	ENSGT00390000007919	ENSGT00940000165858	ENSGT00940000162906.c.b	ENSGT00390000003354 #21	ENSGT00390000001945 #22	ENSGT00960000190426	ENSGT00640000091578 #23	ENSGT00940000161852.y.b	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000154535.C	ENSGT00940000155412.b #26	ENSGT00530000064158 #30	ENSGT01030000234518.C.a.a #31	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000159005.p	ENSGT00940000161143
Neognathae_b	ANCESTRAL SPECIES	36											ENSGT00980000198723	ENSGT00950000182975.a.b	ENSGT00940000165858	ENSGT00940000162906.c.b	ENSGT00390000003354 #21	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000161852.y.b	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000154535.C	ENSGT00940000155412.b #26	ENSGT00530000064158.l #30	ENSGT01030000234518.C.a.a #31	ENSGT00530000064158.k #30	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000159005.p	ENSGT00940000161143
Passeriformes	ANCESTRAL SPECIES	97												ENSGT00940000158914	ENSGT00530000063936.a	ENSGT00940000159684	ENSGT00980000199422	ENSGT00390000001945 #22
Passeriformes_d	ANCESTRAL SPECIES	92												ENSGT00940000158914	ENSGT00530000063936.a	ENSGT00940000159684	ENSGT00980000199422	ENSGT00390000001945 #22
Passeriformes_g	ANCESTRAL SPECIES	102												ENSGT00940000158914	ENSGT00530000063936.a	ENSGT00940000159684	ENSGT00980000199422	ENSGT00390000001945 #22
Passeroidea	ANCESTRAL SPECIES	107												ENSGT00940000158914	ENSGT00530000063936.a	ENSGT00940000159684	ENSGT00980000199422	ENSGT00390000001945 #22
Zebra finch	DUPLICATION
Zebra finch	MODERN SPECIES	24	ENSTGUG00000020258	ENSTGUG00000027322	ENSTGUG00000026474	ENSTGUG00000029011	ENSTGUG00000027329	ENSTGUG00000023658	ENSTGUG00000027998	ENSTGUG00000018413	ENSTGUG00000020451	ENSTGUG00000023462	ENSTGUG00000016876	ENSTGUG00000027608	ENSTGUG00000025077	ENSTGUG00000023889	ENSTGUG00000024177	ENSTGUG00000027876 #22
Zebra finch	MODERN SPECIES	24	ENSTGUG00000020451	ENSTGUG00000018413	ENSTGUG00000027998	ENSTGUG00000023658	ENSTGUG00000027329	ENSTGUG00000029011	ENSTGUG00000026474	ENSTGUG00000027322	ENSTGUG00000020258	ENSTGUG00000019726	ENSTGUG00000022883	ENSTGUG00000022243	ENSTGUG00000019233	ENSTGUG00000026670	ENSTGUG00000025465	ENSTGUG00000019157 #22	ENSTGUG00000023637	ENSTGUG00000026867	ENSTGUG00000022079	ENSTGUG00000022595	ENSTGUG00000026107	XAB2 (ENSTGUG00000029015)	ENSTGUG00000020304	PCP2 (ENSTGUG00000018878)	TRAPPC5 (ENSTGUG00000023204)	NDUFB7 (ENSTGUG00000019936)	TECR (ENSTGUG00000029298)	DNAJB1 (ENSTGUG00000028620)	ENSTGUG00000026029	ENSTGUG00000026606	C3 (ENSTGUG00000026277)
Great tit	MODERN SPECIES	287													MAP2K7 (ENSPMJG00000002457)	ENSPMJG00000002448	ENSPMJG00000002445	UBL5 (ENSPMJG00000002443) #22	ENSPMJG00000002415	ENSPMJG00000002407	EMC10 (ENSPMJG00000002345)	ENSPMJG00000002340	XAB2 (ENSPMJG00000002318)	PCP2 (ENSPMJG00000002303)	TRAPPC5 (ENSPMJG00000002296)	ENSPMJG00000002286	TECR (ENSPMJG00000002272)	GIPC1 (ENSPMJG00000002256)	EVI5L (ENSPMJG00000002230)	ENSPMJG00000002223	ENSPMJG00000002203
Neognathae_c	ANCESTRAL SPECIES	38	ENSGT01030000234558.D.b	ENSGT00940000154149.b.b	ENSGT00550000075110	ENSGT00940000159323	ENSGT00940000161246	ENSGT00950000183110.a	ENSGT01050000244941.B.c	ENSGT00940000162643	ENSGT00390000011347	ENSGT00940000160542	ENSGT00550000075064	ENSGT00390000007919	ENSGT00940000165858	ENSGT00940000162906.c.b	ENSGT00390000003354 #21	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000161852.y.b	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000154535.C	ENSGT00940000155412.b #26	ENSGT00530000064158.l #30	ENSGT01030000234518.C.a.a #31	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000175590	ENSGT00940000161143	ENSGT00940000160550
Golden eagle	MODERN SPECIES	2	COLGALT1 (ENSACCG00020005751)	NIBAN3 (ENSACCG00020005766)	PGLS (ENSACCG00020005808)	SLC27A1 (ENSACCG00020005825)	NXNL1 (ENSACCG00020005843)	GMIP (ENSACCG00020005892)	LPAR2 (ENSACCG00020005908)	PBX4 (ENSACCG00020005921)	DSN1 (ENSACCG00020005962)	ENSACCG00020005981	ATP13A1 (ENSACCG00020006018)	CHCHD5 (ENSACCG00020000510)	ENSACCG00020000545	ENSACCG00020000577	FBXL12 (ENSACCG00020000604) #21	UBL5 (ENSACCG00020000623) #22	PIN1 (ENSACCG00020000647) #23	ENSACCG00020000673	OLFM2 (ENSACCG00020000706) #24	ENSACCG00020000734 #25	ENSACCG00020000752	RDH8 (ENSACCG00020000817) #26	PPAN (ENSACCG00020000838) #30	P2RY11 (ENSACCG00020000867) #31	EIF3G (ENSACCG00020000893) #32	DNMT1 (ENSACCG00020001053) #33	MRPL4 (ENSACCG00020001344) #35	S1PR2 (ENSACCG00020001362) #34	ENSACCG00020001376	ENSACCG00020001398	ENSACCG00020001437
Kakapo	MODERN SPECIES	73	PRKCSH (ENSSHBG00005017090)	COLGALT1 (ENSSHBG00005017082)	PGLS (ENSSHBG00005017077)	SLC27A1 (ENSSHBG00005017073)	NXNL1 (ENSSHBG00005017070)	GMIP (ENSSHBG00005017062)	LPAR2 (ENSSHBG00005017053)	PBX4 (ENSSHBG00005017050)	ENSSHBG00005017042	MVB12A (ENSSHBG00005017030)	ATP13A1 (ENSSHBG00005016793)	CHCHD5 (ENSSHBG00005016736)	ENSSHBG00005016729	ENSSHBG00005016725	FBXL12 (ENSSHBG00005016723) #21	UBL5 (ENSSHBG00005016718) #22	PIN1 (ENSSHBG00005016716) #23	ENSSHBG00005016711	OLFM2 (ENSSHBG00005016706) #24	ENSSHBG00005016696 #25	ENSSHBG00005016691	RDH8 (ENSSHBG00005016683) #26	PPAN (ENSSHBG00005016676) #30	EIF3G (ENSSHBG00005016670) #32	DNMT1 (ENSSHBG00005014896) #33	S1PR2 (ENSSHBG00005014775) #34	MRPL4 (ENSSHBG00005014769) #35	S1PR5 (ENSSHBG00005014763) ##34	KEAP1 (ENSSHBG00005014757)	PDE4A (ENSSHBG00005014607)	CDC37 (ENSSHBG00005014562)
Galloanserae	ANCESTRAL SPECIES	47			ENSGT00550000075110	ENSGT00940000159323	ENSGT00940000161246	ENSGT00950000183110.a	ENSGT01050000244941.B.c	ENSGT00940000162643	ENSGT00390000011347	ENSGT00940000160542	ENSGT00550000075064	ENSGT00390000007919	ENSGT00940000165858	ENSGT00940000164508	ENSGT00390000003354 #21	ENSGT00390000001945 #22	ENSGT00960000190426	ENSGT00640000091578 #23	ENSGT00940000161852.y.b	ENSGT00940000159148 #24	ENSGT00940000155412.b #26	ENSGT00530000064158 #30	ENSGT01030000234518.C.a.a #31	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34
Phasianidae	ANCESTRAL SPECIES	38		ENSGT00550000075110	ENSGT00940000159323	ENSGT00940000161246	ENSGT00950000183110.a	ENSGT01050000244941.B.c	ENSGT00940000162643	ENSGT00390000011347	ENSGT00940000160542	ENSGT00550000075064	ENSGT00390000007919	ENSGT00940000165858	ENSGT01030000234575.d	ENSGT00990000210697	ENSGT00390000003354 #21	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000155412.b #26	ENSGT00530000064158 #30	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34
Phasianidae_b	ANCESTRAL SPECIES	48						ENSGT01050000244941.B.c	ENSGT00940000162643	ENSGT00390000011347	ENSGT00940000160542	ENSGT00550000075064	ENSGT00390000007919	ENSGT00940000165858	ENSGT01030000234575.d	ENSGT00990000210697	ENSGT00390000003354 #21	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000159148 #24	ENSGT00940000155412.b #26	ENSGT00530000064158 #30	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34
Chicken	MODERN SPECIES	23	ENSGALG00010003208	ENSGALG00010003211	ENSGALG00010003245	MRI1 (ENSGALG00010003248)	YJU2B (ENSGALG00010003249)	MAST1 (ENSGALG00010002518)	LPAR2 (ENSGALG00010002533)	PBX4 (ENSGALG00010002547)	DSN1 (ENSGALG00010003968)	MVB12A (ENSGALG00010002573)	ATP13A1 (ENSGALG00010002581)	ENSGALG00010002597	ENSGALG00010002606	ENSGALG00010002629	FBXL12 (ENSGALG00010002658) #21	UBL5 (ENSGALG00010002682) #22	PIN1 (ENSGALG00010002703) #23	OLFM2 (ENSGALG00010002713) #24	RDH8 (ENSGALG00010002733) #26	PPAN (ENSGALG00010002762) #30	EIF3G (ENSGALG00010002781) #32	DNMT1 (ENSGALG00010002837) #33	S1PR2 (ENSGALG00010002908) #34	ELOF1 (ENSGALG00010003251)	ACP5 (ENSGALG00010003260)	NFIX (ENSGALG00010003273)	ENSGALG00010003279	GADD45GIP1 (ENSGALG00010003292)	RAD23A (ENSGALG00010003299)	CALR (ENSGALG00010003305)	FARSA (ENSGALG00010003352)
Anatidae	ANCESTRAL SPECIES	95			ENSGT00550000075110	ENSGT00940000159323	ENSGT00940000161246	ENSGT00950000183110.a	ENSGT01050000244941.B.c	ENSGT00940000162643	ENSGT00390000011347	ENSGT00940000160542	ENSGT00550000075064	ENSGT00390000007919	ENSGT00940000165858	ENSGT00940000164508	ENSGT00390000003354 #21	ENSGT00390000001945 #22	ENSGT00960000190426	ENSGT00640000091578 #23	ENSGT00940000161852.y.b	ENSGT00940000159148 #24
Pink-footed goose	MODERN SPECIES	441			PGLS (ENSABRG00000003246)	SLC27A1 (ENSABRG00000003217)	NXNL1 (ENSABRG00000003211)	GMIP (ENSABRG00000003158)	LPAR2 (ENSABRG00000003146)	PBX4 (ENSABRG00000003128)	ENSABRG00000003114	ENSABRG00000003103	ATP13A1 (ENSABRG00000003080)	CHCHD5 (ENSABRG00000003013)	ENSABRG00000002999	ENSABRG00000002983	ENSABRG00000002950	UBL5 (ENSABRG00000002933) #22	ENSABRG00000002926	PIN1 (ENSABRG00000002911) #23	ENSABRG00000002897	OLFM2 (ENSABRG00000002873) #24
Duck	MODERN SPECIES	2423					PGLS (ENSAPLG00000011844)	SLC27A1 (ENSAPLG00000011847)	ENSAPLG00000017811	LPAR2 (ENSAPLG00000012802)	PBX4 (ENSAPLG00000012834)	DSN1 (ENSAPLG00000012996)	ATP13A1 (ENSAPLG00000013387)	CHCHD5 (ENSAPLG00000002165)	ENSAPLG00000014203	ENSAPLG00000014336	FBXL12 (ENSAPLG00000021099) #21	UBL5 (ENSAPLG00000014340) #22	PIN1 (ENSAPLG00000014344) #23
Lepidosauria	ANCESTRAL SPECIES	109	ENSGT01030000234558.D.b	ENSGT00550000075110	ENSGT00940000159323	ENSGT00940000161246	ENSGT00950000183110.a	ENSGT01050000244941.B.c	ENSGT00940000162643	ENSGT00390000011347	ENSGT00940000160542	ENSGT00550000075064	ENSGT00390000007919	ENSGT00940000165858	ENSGT00940000162906.c.b	ENSGT00990000210697	ENSGT00390000003354 #21	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000161852.y.b	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000154535.C	ENSGT00940000155412.b #26
Episquamata	ANCESTRAL SPECIES	4	ENSGT00940000159323	ENSGT00940000161246	ENSGT00950000183110.a	ENSGT01050000244941.B.c	ENSGT00940000162643	ENSGT00390000011347	ENSGT00940000160542	ENSGT00550000075064	ENSGT00390000007919	ENSGT00940000165858	ENSGT00940000162906.c.b.a.b	ENSGT01030000234575.d	ENSGT00940000162906.c.b.b	ENSGT00940000162906.c.b.a.a	ENSGT00390000003354 #21	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000161852.y.b	ENSGT00940000159148 #24	ENSGT00940000154535.B	ENSGT00940000159065	ENSGT00390000002307	ENSGT00940000159931	ENSGT00940000154126.h.a	ENSGT00530000063825.B	ENSGT00940000160217	ENSGT00940000160763	ENSGT00940000161232	ENSGT00940000160712	ENSGT00390000016619.b	ENSGT00940000164745.c.a
Laterata	ANCESTRAL SPECIES	1	ENSGT00550000075110	ENSGT00940000159323	ENSGT00940000161246	ENSGT00950000183110.a	ENSGT01050000244941.B.c	ENSGT00940000162643	ENSGT00390000011347	ENSGT00940000160542	ENSGT00550000075064	ENSGT00390000007919	ENSGT00940000165858	ENSGT00940000162906.c.b.a.b	ENSGT01030000234575.d	ENSGT00990000210697	ENSGT00390000003354 #21	ENSGT00390000001945 #22	ENSGT01030000235049	ENSGT00640000091578 #23	ENSGT00940000161852.y.b	ENSGT00940000159148 #24	ENSGT00940000154535.C	ENSGT00940000155412.b #26	ENSGT01100000263474.a.b.b.j.b.b.b.a.b.a	ENSGT00940000159065	ENSGT00390000002307	ENSGT00940000159931	ENSGT00940000154126.h.a	ENSGT00530000063825.B	ENSGT00940000160217	ENSGT00940000160763	ENSGT00940000161232
Common wall lizard	MODERN SPECIES	10	ENSPMRG00000007054	ENSPMRG00000007060	NXNL1 (ENSPMRG00000007061)	ENSPMRG00000007070	LPAR2 (ENSPMRG00000007071)	PBX4 (ENSPMRG00000007077)	ENSPMRG00000007096	ATP13A1 (ENSPMRG00000007104)	CHCHD5 (ENSPMRG00000007125)	ENSPMRG00000007137	ENSPMRG00000007164	ENSPMRG00000007180	ENSPMRG00000007187	ENSPMRG00000007195	FBXL12 (ENSPMRG00000007198) #21	UBL5 (ENSPMRG00000007209) #22	ENSPMRG00000007214	PIN1 (ENSPMRG00000007220) #23	ENSPMRG00000007236	OLFM2 (ENSPMRG00000007242) #24	ENSPMRG00000007254	ENSPMRG00000007274	RDH8 (ENSPMRG00000007284) #26	ENSPMRG00000007295	ENSPMRG00000007301	ENSPMRG00000007306	H3C13 (ENSPMRG00000007311)	ENSPMRG00000007315	ENSPMRG00000007324	ENSPMRG00000007330	ENSPMRG00000007336
Toxicofera	ANCESTRAL SPECIES	19	ENSGT00940000159323	ENSGT00940000161246	ENSGT00950000183110.a	ENSGT01050000244941.B.c	ENSGT00940000162643	ENSGT00390000011347	ENSGT00940000160542	ENSGT00550000075064	ENSGT00390000007919	ENSGT00940000165858	ENSGT00940000162906.c.b.a.b	ENSGT01030000234575.d	ENSGT00940000162906.c.b.b	ENSGT00940000162906.c.b.a.a	ENSGT00390000003354 #21	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000161852.y.b	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000154535.C	ENSGT01000000214708	ENSGT00940000167399.a	ENSGT00940000153092.a.b	ENSGT01060000248528.b.kh	ENSGT01100000263474.a.b.b.j.b.b.b.a.a.a.a.b.b.a.a	ENSGT00940000153118.db.b	ENSGT01060000248528.b.jh.a.a.b	ENSGT01100000263567.a.b	ENSGT01100000263504.a.b.b.b.a.a	ENSGT00950000183089
Lizard	DUPLICATION
Lizard	MODERN SPECIES	812	ENSACAG00000005014	PGLS (ENSACAG00000005002)	ENSACAG00000042149	ENSACAG00000004910	NXNL1 (ENSACAG00000004907)	GMIP (ENSACAG00000004868)	ENSACAG00000004860	PBX4 (ENSACAG00000004770)	ENSACAG00000045463	ENSACAG00000004718	ENSACAG00000004623	ENSACAG00000004621	ENSACAG00000004557	ENSACAG00000041310	ENSACAG00000004547 #21	ENSACAG00000045446 #22	PIN1 (ENSACAG00000042713) #23	ENSACAG00000044484 #21	ENSACAG00000041929	OLFM2 (ENSACAG00000004487) #24	ENSACAG00000034633	ENSACAG00000004055
Lizard	MODERN SPECIES	1	HSDL2 (ENSACAG00000017353)	PTBP3 (ENSACAG00000017316)	SUSD1 (ENSACAG00000022560)	UGCG (ENSACAG00000017299)	ENSACAG00000014828	COCH (ENSACAG00000014832)	ENSACAG00000034657	STRN3 (ENSACAG00000014886)	AP4S1 (ENSACAG00000015092)	HECTD1 (ENSACAG00000015118)	HEATR5A (ENSACAG00000015177)	DTD2 (ENSACAG00000015281)	NUBPL (ENSACAG00000015286)	ENSACAG00000029681	ARHGAP5 (ENSACAG00000002726)	ENSACAG00000044565 #22	AKAP6 (ENSACAG00000002643)	ENSACAG00000036757	NPAS3 (ENSACAG00000002620)	EGLN3 (ENSACAG00000040138)	SPTSSA (ENSACAG00000044505)	EAPP (ENSACAG00000040323)	SNX6 (ENSACAG00000002409)	CFL2 (ENSACAG00000002385)	ENSACAG00000035722	BAZ1A (ENSACAG00000002328)	ENSACAG00000002294	ENSACAG00000002103	FAM177A1 (ENSACAG00000024339)	PPP2R3C (ENSACAG00000002011)	PRORP (ENSACAG00000001929)
Elapidae	ANCESTRAL SPECIES	2	ENSGT00550000075110	ENSGT00940000159323	ENSGT00940000161246	ENSGT00950000183110.a	ENSGT01050000244941.B.c	ENSGT00940000162643	ENSGT00390000011347	ENSGT00940000160542	ENSGT00550000075064	ENSGT00390000007919	ENSGT00940000165858.a	ENSGT00940000162906.c.b.a.b	ENSGT01030000234575.d	ENSGT00990000210697	ENSGT00390000003354 #21	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000161852.y.b	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000154535.C	ENSGT01000000214708	ENSGT00940000167399.a	ENSGT00940000161385	ENSGT01060000248528.b.kh	ENSGT01100000263506.a	ENSGT00940000153125.D	ENSGT01010000230061	ENSGT01100000263474.a.b.b.j.b.b.b.a.b.a.a.a	ENSGT00940000160426	ENSGT01100000263559.B
Indian cobra	MODERN SPECIES	1	ENSNNAG00000005888	PGLS (ENSNNAG00000005874)	SLC27A1 (ENSNNAG00000005331)	NXNL1 (ENSNNAG00000005260)	GMIP (ENSNNAG00000004694)	LPAR2 (ENSNNAG00000004598)	PBX4 (ENSNNAG00000004444)	ENSNNAG00000004413	ATP13A1 (ENSNNAG00000004315)	CHCHD5 (ENSNNAG00000004294)	ENSNNAG00000004251	ENSNNAG00000004184	ENSNNAG00000004165	ENSNNAG00000004151	FBXL12 (ENSNNAG00000004138) #21	UBL5 (ENSNNAG00000004123) #22	PIN1 (ENSNNAG00000004077) #23	ENSNNAG00000004055	OLFM2 (ENSNNAG00000004038) #24	ENSNNAG00000004010	ENSNNAG00000003993	ENSNNAG00000003983	ENSNNAG00000003973	ENSNNAG00000003970	ENSNNAG00000003960	ENSNNAG00000003953	ENSNNAG00000003948	ENSNNAG00000003930	HDAC7 (ENSNNAG00000003661)	ENSNNAG00000003605	SLC48A1 (ENSNNAG00000003594)
Elapidae_a	ANCESTRAL SPECIES	52	ENSGT01030000234558.D.b	ENSGT00550000075110	ENSGT00940000159323	ENSGT00940000161246	ENSGT00950000183110.a	ENSGT01050000244941.B.c	ENSGT00940000162643	ENSGT00390000011347	ENSGT00940000160542	ENSGT00550000075064	ENSGT00390000007919	ENSGT00940000165858.a	ENSGT00940000162906.c.b.a.b	ENSGT00940000162906.c.b.a.a	ENSGT00390000003354 #21	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000161852.y.b	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000154535.C	ENSGT01000000214708	ENSGT00940000167399.a	ENSGT00510000050353	ENSGT01100000263474.a.b.b.j.b.b.b.a.a.a.a.b.a	ENSGT01100000263474.a.b.b.j.b.b.b.a.a.a.a.b.b.a.a.b	ENSGT01060000248528.b.kh	ENSGT01100000263474.a.b.b.j.b.b.b.a.a.a.a.b.b.a.b	ENSGT01100000263474.a.b.b.j.b.b.b.a.b.a.a.a	ENSGT00940000160426	ENSGT01100000263559.B
Blue-lipped sea krait	MODERN SPECIES	5129															ENSLLTG00000011513	UBL5 (ENSLLTG00000011525) #22
Acanthophiinae	ANCESTRAL SPECIES	52	ENSGT00550000075110	ENSGT00940000159323	ENSGT00940000161246	ENSGT00950000183110.a	ENSGT01050000244941.B.c	ENSGT00940000162643	ENSGT00940000160542	ENSGT00550000075064	ENSGT00390000007919	ENSGT00940000165858.a	ENSGT00940000162906.c.b.a.b	ENSGT00960000192668	ENSGT00940000162906.c.b.b	ENSGT00940000162906.c.b.a.a	ENSGT00390000003354 #21	ENSGT00390000001945 #22	ENSGT00640000091578 #23	ENSGT00940000161852.y.b	ENSGT00940000159148 #24	ENSGT00940000162394 #25	ENSGT00940000154535.C	ENSGT01000000214708	ENSGT00940000167399.a	ENSGT00510000050353	ENSGT01100000263474.a.b.b.j.b.b.b.a.a.a.a.b.a	ENSGT01100000263474.a.b.b.j.b.b.b.a.a.a.a.b.b.a.a.b	ENSGT01060000248528.b.kh	ENSGT01100000263474.a.b.b.j.b.b.b.a.a.a.a.b.b.a.a.a	ENSGT00940000153125.D.e.b	ENSGT01100000263474.a.b.b.j.b.b.b.a.b.a.a.a	ENSGT00940000160426
Mainland tiger snake	MODERN SPECIES	57	PGLS (ENSNSUG00000000292)	SLC27A1 (ENSNSUG00000000303)	NXNL1 (ENSNSUG00000000316)	GMIP (ENSNSUG00000000319)	LPAR2 (ENSNSUG00000000341)	PBX4 (ENSNSUG00000000365)	ENSNSUG00000000372	ATP13A1 (ENSNSUG00000000380)	CHCHD5 (ENSNSUG00000000858)	ENSNSUG00000000869	ENSNSUG00000000873	ENSNSUG00000000876	ENSNSUG00000000889	ENSNSUG00000000892	FBXL12 (ENSNSUG00000000897) #21	UBL5 (ENSNSUG00000000908) #22	PIN1 (ENSNSUG00000000910) #23	ENSNSUG00000000911	OLFM2 (ENSNSUG00000000914) #24	ENSNSUG00000000918 #25	ENSNSUG00000000923	ENSNSUG00000000927	ENSNSUG00000000930	ENSNSUG00000000935	ENSNSUG00000000940	ENSNSUG00000000943	ENSNSUG00000000944	ENSNSUG00000000950	ENSNSUG00000000960	HDAC7 (ENSNSUG00000000963)	ENSNSUG00000000978
Eastern brown snake	MODERN SPECIES	63	SLC27A1 (ENSPTXG00000010802)	NXNL1 (ENSPTXG00000010801)	ENSPTXG00000010800	GMIP (ENSPTXG00000010799)	LPAR2 (ENSPTXG00000010798)	PBX4 (ENSPTXG00000010797)	ENSPTXG00000010796	ATP13A1 (ENSPTXG00000010795)	CHCHD5 (ENSPTXG00000010794)	ENSPTXG00000010778	ENSPTXG00000010773	ENSPTXG00000010771	ENSPTXG00000010769	ENSPTXG00000010768	FBXL12 (ENSPTXG00000010764) #21	UBL5 (ENSPTXG00000010763) #22	PIN1 (ENSPTXG00000010762) #23	ENSPTXG00000010761	OLFM2 (ENSPTXG00000010760) #24	ENSPTXG00000010755 #25	ENSPTXG00000010751	ENSPTXG00000010748	ENSPTXG00000010746	ENSPTXG00000010745	H2AC7 (ENSPTXG00000010743)	H3C13 (ENSPTXG00000010742)	ENSPTXG00000010740	ENSPTXG00000010739	ENSPTXG00000010738	ENSPTXG00000010737	HDAC7 (ENSPTXG00000010734)
Anura	ANCESTRAL SPECIES																	ENSGT00390000001945 #22
Frog	MODERN SPECIES	3	adgre5 (ENSXETG00000020610)	ddx39a (ENSXETG00000020607)	pkn1 (ENSXETG00000020605)	ptger1 (ENSXETG00000028023)	gipc1 (ENSXETG00000020602)	dnajb1 (ENSXETG00000020601)	tecr (ENSXETG00000020594)	ENSXETG00000020592	colgalt1 (ENSXETG00000020570)	ENSXETG00000043783	znf333 (ENSXETG00000028016)	pgls (ENSXETG00000038389)	nxnl1 (ENSXETG00000044461)	gmip (ENSXETG00000020566)	lpar2 (ENSXETG00000020627)	ubl5 (ENSXETG00000026973) #22	ENSXETG00000045421	ENSXETG00000045363	h4c3 (ENSXETG00000042164)	ENSXETG00000047471	h3c14 (ENSXETG00000041525)	ENSXETG00000040201	ENSXETG00000043306	ENSXETG00000048561	ENSXETG00000042408	ENSXETG00000042790	ENSXETG00000045640	h3c14 (ENSXETG00000042473)	h2bc11 (ENSXETG00000039549)	ENSXETG00000048994	h3c14 (ENSXETG00000046975)
Leishan spiny toad	MODERN SPECIES	6	ENSLLEG00000004887	ENSLLEG00000007914	SLC25A11 (ENSLLEG00000007839)	CHRNE (ENSLLEG00000007701)	ENSLLEG00000007527	MINK1 (ENSLLEG00000007294)	ENSLLEG00000007266	ENSLLEG00000007216	ENSLLEG00000007165	ENSLLEG00000007145	ENSLLEG00000007123	ENSLLEG00000007101	ENSLLEG00000007055	ENSLLEG00000007037	ENSLLEG00000007031	UBL5 (ENSLLEG00000007008) #22	ENSLLEG00000006979	ENSLLEG00000006963	FIS1 (ENSLLEG00000006865)	ENSLLEG00000006853	CLDN15 (ENSLLEG00000006830)	ENSLLEG00000006802	ENSLLEG00000006748	ENSLLEG00000006665	ENSLLEG00000006607	PLD2 (ENSLLEG00000006490)	PSMB6 (ENSLLEG00000006439)	ENSLLEG00000006414	ENSLLEG00000006379	TM4SF5 (ENSLLEG00000006199)	ENSLLEG00000006157
Coelacanth	MODERN SPECIES	329									ENSLACG00000001623	ENSLACG00000002271	shfl (ENSLACG00000003021) #28	RDH8 (ENSLACG00000003872) #26	ENSLACG00000007090	ENSLACG00000011577	OLFM2 (ENSLACG00000013392) #24	UBL5 (ENSLACG00000015288) #22	ENSLACG00000015326	ENSLACG00000015403	ENSLACG00000022314 #21	ENSLACG00000015722	ENSLACG00000015862	ENSLACG00000015947	ATP13A1 (ENSLACG00000015977)	MVB12A (ENSLACG00000016128)	ENSLACG00000016228	pbx4 (ENSLACG00000016442)	GMIP (ENSLACG00000017076)	NXNL1 (ENSLACG00000017286)	EVI5L (ENSLACG00000017352)	ENSLACG00000017590	TDRKH (ENSLACG00000017639)
Actinopterygii	ANCESTRAL SPECIES	450										ENSGT00940000160234	ENSGT00940000155412.b #26	ENSGT00940000154535.C	ENSGT00940000162394 #25	ENSGT00940000159148 #24	ENSGT00640000091578 #23	ENSGT00390000001945 #22
Reedfish	MODERN SPECIES	235															pin1 (ENSECRG00000015363) #23	UBL5 (ENSECRG00000015349) #22
Neopterygii	ANCESTRAL SPECIES	8										ENSGT00940000160234	ENSGT00940000155412.b #26	ENSGT00940000154535.C	ENSGT00940000162394 #25	ENSGT00940000159148 #24	ENSGT00640000091578 #23	ENSGT00390000001945 #22	ENSGT00940000154130.a.a.a	ENSGT00940000159125	ENSGT00950000183047.c.a	ENSGT00940000154615	ENSGT00940000160446	ENSGT00940000165414	ENSGT00390000005065 #28	ENSGT00940000163377.a.b	ENSGT00940000153391.c.a	ENSGT00950000182975.a.b	ENSGT00980000198723	ENSGT00550000075140	ENSGT00940000160045	ENSGT00390000016884	ENSGT01050000244941.B.c.b.b
Osteoglossocephalai	ANCESTRAL SPECIES	527															ENSGT00640000091578 #23	ENSGT00390000001945 #22	ENSGT00940000159125	ENSGT00950000183047.c.a
Osteoglossiformes	ANCESTRAL SPECIES	315		ENSGT01030000234559.a.a.b.b	ENSGT00940000159323.a	ENSGT01030000234558.D.b.g.a	ENSGT00940000161246	ENSGT00530000063777.a.a.a.i	ENSGT00940000162790.a.u.a.b	ENSGT01050000244941.B.c.b.a	ENSGT00940000160542	ENSGT00950000182975.a.b.a.b	ENSGT00940000163377.a.b.a	ENSGT00940000160446	ENSGT00940000155412.a.a.b ##26	ENSGT00940000154535.A.m	ENSGT00640000091578 #23	ENSGT00390000001945 #22	ENSGT00940000159125.q	ENSGT00940000154130.a.a.a
P. kingsleyae	MODERN SPECIES	501												RDH8 (ENSPKIG00000022947) ##26	ENSPKIG00000022934	ENSPKIG00000022855	pin1 (ENSPKIG00000022832) #23	UBL5 (ENSPKIG00000022811) #22	VAV1 (ENSPKIG00000022735)	ENSPKIG00000022692	ENSPKIG00000022657	ENSPKIG00000022636
Asian bonytongue	MODERN SPECIES		colgalt1b (ENSSFOG00015020892)	nxnl1 (ENSSFOG00015020903)	ENSSFOG00015020852	ENSSFOG00015029832	ENSSFOG00015020911	akap8l (ENSSFOG00015020914)	ENSSFOG00015000097	LPAR2 (ENSSFOG00015000209)	ENSSFOG00015025919	CAMSAP3 (ENSSFOG00015000235)	ENSSFOG00015000255	GPR108 (ENSSFOG00015000300)	rdh8b (ENSSFOG00015000352) ##26	ENSSFOG00015027226	pin1 (ENSSFOG00015028816) #23	UBL5 (ENSSFOG00015000448) #22	ENSSFOG00015032990	VAV1 (ENSSFOG00015000475)	ENSSFOG00015000590	ENSSFOG00015000643	ENSSFOG00015026634
Clupeocephala	ANCESTRAL SPECIES	251		ENSGT00940000161246	ENSGT01030000234558.D.b.g.a	ENSGT00940000154149.b.b	ENSGT00940000165175.a	ENSGT00940000160542	ENSGT00530000063777.a.a.a	ENSGT00940000162790.a.u.a	ENSGT01050000244941.B.c.b.a	ENSGT01100000263529.a.a.a.a.a.a.b	ENSGT00950000182975.a.b.a.b	ENSGT00950000182969.C	ENSGT00940000163377.a.b.a	ENSGT00940000160446	ENSGT00640000091578 #23	ENSGT00390000001945 #22	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a.b	ENSGT00940000154615.i.a.b	ENSGT00940000159148.b #24	ENSGT00940000162394 #25	ENSGT00950000183249	ENSGT00940000154535.B	ENSGT00940000155412.a.a.b ##26
Euteleosteomorpha	ANCESTRAL SPECIES	114	ENSGT00940000164566.a	ENSGT00940000155764.A.b.a.b	ENSGT00940000158445.e	ENSGT00940000165175.a	ENSGT00940000160542	ENSGT00530000063777.a.a.a	ENSGT00940000162790.a.u.a	ENSGT01050000244941.B.c.b.a	ENSGT01100000263529.a.a.a.a.a.a.b	ENSGT00950000182975.a.b.a.b	ENSGT00950000182969.C	ENSGT00940000163377.a.b.a	ENSGT00940000160446	ENSGT00530000063725.p	ENSGT00640000091578 #23	ENSGT00390000001945 #22	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a.b	ENSGT00940000154615.i.a.b	ENSGT00940000159148.b #24	ENSGT00940000162394 #25	ENSGT00950000183249	ENSGT00940000154535.B	ENSGT00940000155412.a.a.b ##26
Acanthomorphata	ANCESTRAL SPECIES	39	ENSGT00940000173775	ENSGT00940000165949	ENSGT00390000002886.a.a.a	ENSGT00940000156222.a.b	ENSGT00940000167865	ENSGT00930000151032.A.c.a	ENSGT00390000009298	ENSGT00390000013127.b	ENSGT00390000010052.b	ENSGT00400000022459	ENSGT00940000153974.A	ENSGT00390000015109	ENSGT00950000182960.a.a.a.b	ENSGT00990000204057	ENSGT00640000091578 #23	ENSGT00390000001945 #22	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a.b	ENSGT00940000154615.i.a.b	ENSGT00940000159148.b #24	ENSGT00940000162394 #25	ENSGT00950000183249	ENSGT00940000154535.B	ENSGT00940000155412.a.a.b ##26	ENSGT00390000014423	ENSGT00940000166918	ENSGT00940000157752	ENSGT00940000163566.a.a	ENSGT00950000183157.a.a.b.d	ENSGT00940000163679
Cod	MODERN SPECIES	16	ENSGMOG00000007771	ENSGMOG00000007758	ENSGMOG00000030890	ENSGMOG00000007752	ENSGMOG00000036131	ENSGMOG00000007731	alkbh5 (ENSGMOG00000007690)	mief2 (ENSGMOG00000007684)	smcr8b (ENSGMOG00000033083)	ENSGMOG00000007653	ENSGMOG00000007639	fbxl18 (ENSGMOG00000007631)	actb1 (ENSGMOG00000023192)	ENSGMOG00000037081	ENSGMOG00000007618 #23	ENSGMOG00000007612 #22	VAV1 (ENSGMOG00000007593)	ENSGMOG00000007578	TRIP10 (ENSGMOG00000007571)	olfm2b (ENSGMOG00000015213) #24	ENSGMOG00000017989	rdh8b (ENSGMOG00000017977) ##26	ENSGMOG00000030234	ENSGMOG00000017959	ENSGMOG00000030119	ENSGMOG00000017949	ENSGMOG00000035340	ENSGMOG00000017891	ttyh3b (ENSGMOG00000017873)	ENSGMOG00000005139	ENSGMOG00000036838
Euacanthomorphacea	ANCESTRAL SPECIES	3	ENSGT00940000167865	ENSGT00930000151032.A.c.a	ENSGT00390000009298	ENSGT00390000013127.b	ENSGT00390000010052.b	ENSGT00400000022459	ENSGT00940000153974.A	ENSGT00390000015109	ENSGT00950000182960.a.a.a.b	ENSGT00950000182960.a.a.a.a	ENSGT00950000182960.a.b	ENSGT01100000263483.D.d	ENSGT00940000164100.A.c.a	ENSGT00990000204057	ENSGT00640000091578 #23	ENSGT00390000001945 #22	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a.b	ENSGT00940000154615.i.a.b	ENSGT00940000159148.b #24	ENSGT00940000162394 #25	ENSGT00950000183249	ENSGT00940000154535.B	ENSGT00940000155412.a.a.b ##26	ENSGT00390000014423	ENSGT00940000157752	ENSGT00940000163566.a.a	ENSGT00950000183157.a.a.b.d	ENSGT00940000163679	ENSGT00950000183060.a.a.d.a
Pinecone sodierfish	MODERN SPECIES		abcg2b (ENSMMDG00005001846)	hapstr1b (ENSMMDG00005001839)	ENSMMDG00005001834	GRIN2A (ENSMMDG00005001791)	ENSMMDG00005001774	ENSMMDG00005001768	alkbh5 (ENSMMDG00005001762)	mief2 (ENSMMDG00005001756)	smcr8b (ENSMMDG00005001743)	zgc:112980 (ENSMMDG00005001733)	PTCD1 (ENSMMDG00005001724)	fbxl18 (ENSMMDG00005001716)	ENSMMDG00005001059	ENSMMDG00005001042	pin1 (ENSMMDG00005001037) #23	UBL5 (ENSMMDG00005001035) #22	VAV1 (ENSMMDG00005000975)	ENSMMDG00005000968	TRIP10 (ENSMMDG00005000933)	ENSMMDG00005000926	olfm2b (ENSMMDG00005000905) #24	col5a3b (ENSMMDG00005000888)	rdh8b (ENSMMDG00005000869) ##26	ENSMMDG00005000867	PLK1 (ENSMMDG00005000859)	ENSMMDG00005000855	FSCN1 (ENSMMDG00005000853)	ENSMMDG00005000848	ttyh3b (ENSMMDG00005000846)	ENSMMDG00005000826	ENSMMDG00005000821
Percomorphaceae	ANCESTRAL SPECIES	17	ENSGT00390000002886.a.a.a	ENSGT00940000156222.a.b	ENSGT00940000182552	ENSGT00940000155335.t	ENSGT00930000151032.A.c.a	ENSGT00390000009298	ENSGT00390000013127.b	ENSGT00390000010052.b	ENSGT00400000022459	ENSGT00940000153974.A	ENSGT00390000015109	ENSGT00950000182960.a.a.b.e.b	ENSGT01100000263598	ENSGT00530000063725.p	ENSGT00640000091578 #23	ENSGT00390000001945 #22	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a.b	ENSGT00940000154615.i.a.b	ENSGT00940000159148.b #24	ENSGT00940000162394 #25	ENSGT00950000183249	ENSGT00940000154535.B	ENSGT00940000155412.a.a.b ##26	ENSGT00390000014423	ENSGT00940000157752	ENSGT00940000163566.a.a	ENSGT00950000183157.a.a.b.d	ENSGT00940000163679	ENSGT00950000183060.a.a.d.a
Tiger tail seahorse	MODERN SPECIES	518	alkbh5 (ENSHCOG00000010816)	ENSHCOG00000010830	ENSHCOG00000010858	ENSHCOG00000010966	arpc1b (ENSHCOG00000010998)	arpc1a (ENSHCOG00000011030)	ENSHCOG00000011040	ENSHCOG00000011268	ttyh3b (ENSHCOG00000011321)	ENSHCOG00000011339	PLK1 (ENSHCOG00000011376)	ENSHCOG00000011400	ENSHCOG00000011430	ENSHCOG00000011437	pin1 (ENSHCOG00000011456) #23	UBL5 (ENSHCOG00000011460) #22	VAV1 (ENSHCOG00000011487)	ELFN1 (ENSHCOG00000011553)	mad1l1 (ENSHCOG00000011565)	ENSHCOG00000012204
Percomorphaceae_B	ANCESTRAL SPECIES		ENSGT00940000165949	ENSGT00390000002886.a.a.a	ENSGT00940000156222.a.b	ENSGT00940000155335.s.a	ENSGT00940000182552	ENSGT00930000151032.A.c.a	ENSGT00390000009298	ENSGT00390000013127.b	ENSGT00390000010052.b	ENSGT00400000022459	ENSGT00940000153974.A	ENSGT00390000015109	ENSGT00950000182960.a.a.b.e.b	ENSGT01100000263598	ENSGT00640000091578 #23	ENSGT00390000001945 #22	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a.b	ENSGT00940000154615.i.a.b	ENSGT01060000248589.A.d	ENSGT00940000159148.b #24	ENSGT00940000162394 #25	ENSGT00950000183249	ENSGT00940000154535.B	ENSGT00940000155412.a.a.b ##26	ENSGT00390000014423	ENSGT00940000157752	ENSGT00940000163566.a.a	ENSGT00950000183157.a.a.b.d	ENSGT00940000163679
Ovalentaria	ANCESTRAL SPECIES		ENSGT00930000151032.A.c.a	ENSGT00390000009298	ENSGT00390000013127.b	ENSGT00390000010052.b	ENSGT00400000022459	ENSGT00940000153974.A	ENSGT00390000015109	ENSGT00950000182960.a.a.b.f	ENSGT00950000182960.a.a.a.b	ENSGT00950000182960.a.a.a.a	ENSGT00950000182960.a.a.b.e.b	ENSGT01100000263598	ENSGT00530000063725.p.f.d	ENSGT00990000204057	ENSGT00640000091578 #23	ENSGT00390000001945 #22	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a.b	ENSGT00940000154615.i.a.b	ENSGT01060000248589.A.d	ENSGT00940000159148.b #24	ENSGT00950000183249	ENSGT00940000178300	ENSGT00940000154535.B	ENSGT00940000155412.a.a.b ##26	ENSGT00390000014423	ENSGT00940000157752	ENSGT00940000163566.a.a	ENSGT00950000183157.a.a.b.d	ENSGT00940000163679
Ovalentaria_B	ANCESTRAL SPECIES	4	ENSGT00940000173775	ENSGT00940000165949	ENSGT00390000002886.a.a.a	ENSGT00940000156222.a.b	ENSGT00940000155335.s.a	ENSGT00930000151032.A.c.a	ENSGT00390000009298	ENSGT00390000013127.b	ENSGT00390000010052.b	ENSGT00400000022459	ENSGT00940000153974.A	ENSGT00390000015109	ENSGT00950000182960.a.a.b.e.b	ENSGT00530000063725.p.f.d	ENSGT00640000091578 #23	ENSGT00390000001945 #22	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a.b	ENSGT00940000154615.i.a.b	ENSGT01060000248589.A.d	ENSGT00940000159148.b #24	ENSGT00950000183249	ENSGT00940000178300	ENSGT00940000154535.B	ENSGT00940000155412.a.a.b ##26	ENSGT00390000014423	ENSGT00940000157752	ENSGT00940000163566.a.a	ENSGT00950000183157.a.a.b.d	ENSGT00940000163679
Cichlidae	ANCESTRAL SPECIES	3	ENSGT00940000173775	ENSGT00940000165949	ENSGT00390000002886.a.a.a	ENSGT00940000156222.a.b	ENSGT00940000155335.s.a	ENSGT00390000009298	ENSGT00390000013127.b	ENSGT00390000010052.b	ENSGT00400000022459	ENSGT00940000153974.A	ENSGT00390000015109	ENSGT00950000182960.a.a.b.e.b	ENSGT01100000263598	ENSGT00530000063725.p.f.c.b	ENSGT00640000091578 #23	ENSGT00390000001945 #22	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a.b	ENSGT00940000154615.i.a.b	ENSGT00940000159148.b #24	ENSGT00940000154535.B	ENSGT00940000155412.a.a.b ##26	ENSGT00390000014423	ENSGT00940000157752	ENSGT00940000163566.a.a	ENSGT00950000183157.a.a.b.d	ENSGT00940000163679	ENSGT00950000183060.a.a.d.a	ENSGT01070000253744.a.a.a.b.a.a	ENSGT00390000001316
Midas cichlid	MODERN SPECIES	629											ENSACIG00000023433	ENSACIG00000023464	ENSACIG00000023590	ENSACIG00000023592	pin1 (ENSACIG00000023594) #23	UBL5 (ENSACIG00000023598) #22	VAV1 (ENSACIG00000023603)	ENSACIG00000023609	TRIP10 (ENSACIG00000023619)	MFAP4 (ENSACIG00000023624)	olfm2b (ENSACIG00000023625) #24	ENSACIG00000023629	ENSACIG00000023633	ENSACIG00000023637	col5a3b (ENSACIG00000023646)	rdh8b (ENSACIG00000023690) ##26	PLK1 (ENSACIG00000023696)	rasd3 (ENSACIG00000023701)	ENSACIG00000023705	ttyh3b (ENSACIG00000000183)	ENSACIG00000000254
Pseudocrenilabrinae	ANCESTRAL SPECIES	3	ENSGT00940000156222.a.b	ENSGT00940000155335.s.a	ENSGT00390000009298	ENSGT00390000013127.b	ENSGT00390000010052.b	ENSGT00400000022459	ENSGT00940000153974.A	ENSGT00390000015109	ENSGT00950000182960.a.a.b.e.b	ENSGT01100000263598	ENSGT00530000063725.p.f.c.b	ENSGT00950000182960.a.a.a.b	ENSGT00950000182960.a.a.a.a	ENSGT00530000063725.p.f.d	ENSGT00640000091578 #23	ENSGT00390000001945 #22	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a.b	ENSGT00940000154615.i.a.b	ENSGT00940000159148.b #24	ENSGT00940000154535.B	ENSGT00940000155412.a.a.b ##26	ENSGT00390000014423	ENSGT00940000157752	ENSGT00940000163566.a.a	ENSGT00950000183157.a.a.b.d	ENSGT00940000163679	ENSGT00950000183060.a.a.d.a	ENSGT01070000253744.a.a.a.b.a.a	ENSGT00390000001316
Nile tilapia	MODERN SPECIES	18	zgc:112980 (ENSONIG00000003172)	PTCD1 (ENSONIG00000003168)	fbxl18 (ENSONIG00000003165)	ENSONIG00000025166	ENSONIG00000003153	ENSONIG00000036066	ACTG1 (ENSONIG00000033329)	ACTB (ENSONIG00000003148)	ENSONIG00000031015	ENSONIG00000033301	ENSONIG00000031994	ENSONIG00000040827	ENSONIG00000036434	ENSONIG00000000258	pin1 (ENSONIG00000027273) #23	UBL5 (ENSONIG00000000251) #22	VAV1 (ENSONIG00000000226)	ENSONIG00000000220	TRIP10 (ENSONIG00000000213)	MFAP4 (ENSONIG00000000210)	OLFM2 (ENSONIG00000000204) #24	rdh8b (ENSONIG00000000184) ##26	ENSONIG00000000181	plk1 (ENSONIG00000000179)	rasd3 (ENSONIG00000000178)	ENSONIG00000000177	ENSONIG00000000175	ttyh3b (ENSONIG00000000171)	ENSONIG00000000169	ENSONIG00000029600	ENSONIG00000037368
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	5	ENSGT00930000151032.A.c.a	ENSGT00390000009298	ENSGT00390000013127.b	ENSGT00390000010052.b	ENSGT00400000022459	ENSGT00940000153974.A	ENSGT00390000015109	ENSGT00950000182960.a.a.b.e.b.a	ENSGT01100000263598	ENSGT00530000063725.p.f.c.b	ENSGT00950000182960.a.a.a.b.c	ENSGT00950000182960.a.a.a.a	ENSGT00530000063725.p.f.c.a	ENSGT00530000063725.p.f.d.h	ENSGT00640000091578 #23	ENSGT00390000001945 #22	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a.b	ENSGT00940000154615.i.a.b	ENSGT00940000159148.b #24	ENSGT00940000154535.B	ENSGT00940000155412.a.a.b ##26	ENSGT00390000014423	ENSGT00940000157752	ENSGT00940000163566.a.a	ENSGT00950000183157.a.a.b.d	ENSGT00940000163679	ENSGT00950000183060.a.a.d.a	ENSGT01070000253744.a.a.a.b.a.a	ENSGT00390000001316
Lyretail cichlid	MODERN SPECIES	410													ENSNBRG00000005510	ENSNBRG00000005640	pin1 (ENSNBRG00000005838) #23	UBL5 (ENSNBRG00000005850) #22	VAV1 (ENSNBRG00000005871)	ENSNBRG00000005943	TRIP10 (ENSNBRG00000005996)	MFAP4 (ENSNBRG00000006008)	olfm2b (ENSNBRG00000006028) #24	col5a3b (ENSNBRG00000006098)	rdh8b (ENSNBRG00000006246) ##26	PLK1 (ENSNBRG00000006324)	ENSNBRG00000006351	ttyh3b (ENSNBRG00000006367)	ENSNBRG00000006422	ENSNBRG00000006510	ENSNBRG00000006542	ELFN1 (ENSNBRG00000006791)	parn (ENSNBRG00000006805)
Haplochromini	ANCESTRAL SPECIES	3	ENSGT00930000151032.A.c.a	ENSGT00390000009298	ENSGT00390000013127.b	ENSGT00390000010052.b	ENSGT00400000022459	ENSGT00940000153974.A	ENSGT00390000015109	ENSGT00950000182960.a.a.b.e.b.a	ENSGT01100000263598	ENSGT00530000063725.p.f.c.b	ENSGT00950000182960.a.a.a.b.c	ENSGT00950000182960.a.a.a.a	ENSGT00530000063725.p.f.c.a	ENSGT00530000063725.p.f.d.h	ENSGT00640000091578 #23	ENSGT00390000001945 #22	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a.b	ENSGT00940000154615.i.a.b	ENSGT00940000159148.b #24	ENSGT00940000154535.B	ENSGT00940000155412.a.a.b ##26	ENSGT00390000014423	ENSGT00940000157752	ENSGT00940000163566.a.a	ENSGT00950000183157.a.a.b.d	ENSGT00940000163679	ENSGT00950000183060.a.a.d.a	ENSGT01070000253744.a.a.a.b.a.a	ENSGT00390000001316
Burton s mouthbrooder	MODERN SPECIES	751															pin1 (ENSHBUG00000001118) #23	UBL5 (ENSHBUG00000016006) #22	VAV1 (ENSHBUG00000015992)	ENSHBUG00000015790	TRIP10 (ENSHBUG00000015695)	MFAP4 (ENSHBUG00000015652)	olfm2b (ENSHBUG00000015644) #24	col5a3b (ENSHBUG00000015622)	rdh8b (ENSHBUG00000015488) ##26	ENSHBUG00000015453	PLK1 (ENSHBUG00000015434)	rasd3 (ENSHBUG00000015371)	ENSHBUG00000015354	ENSHBUG00000015341	ttyh3b (ENSHBUG00000015327)	ENSHBUG00000015280
Haplochromini_A	ANCESTRAL SPECIES	2	ENSGT00390000009298	ENSGT00390000013127.b	ENSGT00390000010052.b	ENSGT00400000022459	ENSGT00940000153974.A	ENSGT00390000015109	ENSGT00950000182960.a.a.b.e.b.a	ENSGT01100000263598	ENSGT00530000063725.p.f.c.b	ENSGT00950000182960.a.a.a.b.c	ENSGT00950000182960.a.a.a.a	ENSGT00530000063725.p.f.d.g.b	ENSGT00530000063725.p.f.c.a	ENSGT00530000063725.p.f.d.h	ENSGT00640000091578 #23	ENSGT00390000001945 #22	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a.b	ENSGT00940000154615.i.a.b	ENSGT00940000159148.b #24	ENSGT00940000154535.B	ENSGT00940000155412.a.a.b ##26	ENSGT00390000014423	ENSGT00940000157752	ENSGT00940000163566.a.a	ENSGT00950000183157.a.a.b.d	ENSGT00940000163679	ENSGT00950000183060.a.a.d.a	ENSGT01070000253744.a.a.a.b.a.a	ENSGT00390000001316
P. nyererei	MODERN SPECIES	440												ENSPNYG00000005896	ENSPNYG00000006073	ENSPNYG00000006105	pin1 (ENSPNYG00000006121) #23	UBL5 (ENSPNYG00000006140) #22	VAV1 (ENSPNYG00000006175)	ENSPNYG00000006241	TRIP10 (ENSPNYG00000006284)	MFAP4 (ENSPNYG00000006305)	olfm2b (ENSPNYG00000006329) #24	col5a3b (ENSPNYG00000006421)	rdh8b (ENSPNYG00000006565) ##26	PLK1 (ENSPNYG00000006585)	rasd3 (ENSPNYG00000006613)	ENSPNYG00000006618	ttyh3b (ENSPNYG00000006636)	ENSPNYG00000006687	mad1l1 (ENSPNYG00000006775)	ELFN1 (ENSPNYG00000006801)	parn (ENSPNYG00000006835)
Haplochromini_B	ANCESTRAL SPECIES	8	ENSGT00390000013127.b	ENSGT00390000010052.b	ENSGT00400000022459	ENSGT00940000153974.A	ENSGT00390000015109	ENSGT00950000182960.a.a.b.e.b.a	ENSGT01100000263598	ENSGT00530000063725.p.f.c.b	ENSGT00950000182960.a.a.a.b.c	ENSGT00940000154664.h.n.c.e.d.a.b	ENSGT00950000182996.b.b.c.b.b.a.b.c	ENSGT00530000063725.p.f.d.g.b	ENSGT00530000063725.p.f.c.a	ENSGT00530000063725.p.f.d.h	ENSGT00640000091578 #23	ENSGT00390000001945 #22	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a.b	ENSGT00940000154615.i.a.b	ENSGT00940000159148.b #24	ENSGT00940000154535.B	ENSGT00940000155412.a.a.b ##26	ENSGT00390000014423	ENSGT00940000157752	ENSGT00940000163566.a.a	ENSGT00950000183157.a.a.b.d	ENSGT00940000163679	ENSGT00950000183060.a.a.d.a	ENSGT01070000253744.a.a.a.b.a.a	ENSGT00390000001316
Zebra mbuna	MODERN SPECIES	1109	zgc:112980 (ENSMZEG00005012703)	PTCD1 (ENSMZEG00005012722)	ACTB (ENSMZEG00005012760)	ENSMZEG00005012791	ENSMZEG00005012824	ENSMZEG00005012869	ENSMZEG00005012969	KLHL10 (ENSMZEG00005013011)	ENSMZEG00005013027	ENSMZEG00005013062	ENSMZEG00005013075	ENSMZEG00005013139	ENSMZEG00005013149	pin1 (ENSMZEG00005013158) #23	pin1 (ENSMZEG00005013165) #23	UBL5 (ENSMZEG00005013172) #22	VAV1 (ENSMZEG00005013190)	ENSMZEG00005013242	TRIP10 (ENSMZEG00005013280)	MFAP4 (ENSMZEG00005013304)	OLFM2 (ENSMZEG00005013310) #24	ENSMZEG00005013366	rdh8b (ENSMZEG00005013446) ##26	ENSMZEG00005013457	PLK1 (ENSMZEG00005013471)	rasd3 (ENSMZEG00005013489)	ENSMZEG00005013492	ENSMZEG00005013511	ttyh3b (ENSMZEG00005013535)	ENSMZEG00005013553	ENSMZEG00005013556
Eastern happy	MODERN SPECIES	18	ENSACLG00000002863	ENSACLG00000002873	ACTG1 (ENSACLG00000002912)	ENSACLG00000002975	KLHL10 (ENSACLG00000002998)	ENSACLG00000003013	ENSACLG00000003066	ENSACLG00000003106	ENSACLG00000003149	ENSACLG00000003165	ENSACLG00000003171	ENSACLG00000003185	ENSACLG00000003192	ENSACLG00000003207	pin1 (ENSACLG00000003231) #23	UBL5 (ENSACLG00000003272) #22	VAV1 (ENSACLG00000003292)	ENSACLG00000003350	ENSACLG00000003460	TRIP10 (ENSACLG00000003466)	MFAP4 (ENSACLG00000003486)	olfm2b (ENSACLG00000003499) #24	col5a3b (ENSACLG00000003865)	ENSACLG00000004154	rdh8b (ENSACLG00000004166) ##26	ENSACLG00000004183	PLK1 (ENSACLG00000004225)	rasd3 (ENSACLG00000004281)	ENSACLG00000004292	ENSACLG00000004313	ttyh3b (ENSACLG00000004343)
Pomacentridae	ANCESTRAL SPECIES	8	ENSGT00940000173775	ENSGT00940000165949	ENSGT00390000002886.a.a.a	ENSGT00940000156222.a.b	ENSGT00930000151032.A.c.a	ENSGT00390000009298	ENSGT00390000013127.b	ENSGT00390000010052.b	ENSGT00940000175728	ENSGT00940000153974.A	ENSGT00950000182960.a.a.b.e.b	ENSGT01100000263598	ENSGT00530000063725.p.e.b	ENSGT00990000204057.a	ENSGT00640000091578 #23	ENSGT00390000001945 #22	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a.b	ENSGT00940000154615.i.a.b	ENSGT01060000248589.A.d	ENSGT00940000159148.b #24	ENSGT00950000183249	ENSGT00940000178300	ENSGT00940000154535.B	ENSGT00940000155412.a.a.b ##26	ENSGT00390000015109	ENSGT00390000014423	ENSGT00940000157752
Pomacentridae_A	ANCESTRAL SPECIES	195													ENSGT00950000182960.a.a.b.e.b	ENSGT00990000204057.a	ENSGT00640000091578 #23	ENSGT00390000001945 #22	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a.b	ENSGT01060000248589.A.d	ENSGT00940000159148.b #24	ENSGT00950000183249	ENSGT00940000178300	ENSGT00940000154535.B	ENSGT00940000155412.a.a.b ##26	ENSGT00390000015109	ENSGT00390000014423	ENSGT00940000157752
Amphiprion	ANCESTRAL SPECIES	294														ENSGT00950000182960.a.a.b.e.b	ENSGT00640000091578 #23	ENSGT00390000001945 #22	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a.b
Clown anemonefish	MODERN SPECIES	653	ENSAOCG00000023026	ENSAOCG00000023020	ENSAOCG00000023007	ttyh3b (ENSAOCG00000022992)	ENSAOCG00000022962	ENSAOCG00000022950	rasd3 (ENSAOCG00000022931)	ENSAOCG00000001654	rdh8b (ENSAOCG00000022902) ##26	fbxl18 (ENSAOCG00000022855)	PLK1 (ENSAOCG00000022832)	ENSAOCG00000022797	ENSAOCG00000022782	ENSAOCG00000022767	pin1 (ENSAOCG00000022743) #23	UBL5 (ENSAOCG00000022726) #22	VAV1 (ENSAOCG00000022698)	ENSAOCG00000022642	TRIP10 (ENSAOCG00000022600)
Orange clownfish	MODERN SPECIES	17	ENSAPEG00000010885	ENSAPEG00000010900	ENSAPEG00000010915	ttyh3b (ENSAPEG00000011026)	ENSAPEG00000011080	ENSAPEG00000011100	rasd3 (ENSAPEG00000011147)	ENSAPEG00000011162	rdh8b (ENSAPEG00000011180) ##26	fbxl18 (ENSAPEG00000011189)	ENSAPEG00000011196	PLK1 (ENSAPEG00000011207)	ENSAPEG00000011242	ENSAPEG00000011264	pin1 (ENSAPEG00000011284) #23	UBL5 (ENSAPEG00000011322) #22	VAV1 (ENSAPEG00000011348)	ENSAPEG00000011483	TRIP10 (ENSAPEG00000011594)	ENSAPEG00000011639	ENSAPEG00000011670	OLFM2 (ENSAPEG00000011686) #24	ENSAPEG00000011718	ENSAPEG00000011756	ENSAPEG00000011765	ENSAPEG00000011772	ENSAPEG00000011844	RPS6KB2 (ENSAPEG00000011904)	ENSAPEG00000011971	ENSAPEG00000011983	ENSAPEG00000012014
Spiny chromis	MODERN SPECIES	322									vasna (ENSAPOG00000006756)	dnaja3b (ENSAPOG00000006811)	pdgfaa (ENSAPOG00000006826)	ENSAPOG00000006852	ENSAPOG00000006885	ENSAPOG00000006966	pin1 (ENSAPOG00000007004) #23	UBL5 (ENSAPOG00000007043) #22	VAV1 (ENSAPOG00000007170)	ENSAPOG00000007248	TRIP10 (ENSAPOG00000007271)	ENSAPOG00000007286	olfm2b (ENSAPOG00000007321) #24	ENSAPOG00000007335	rdh8b (ENSAPOG00000007470) ##26
Bicolor damselfish	MODERN SPECIES	1045			ENSSPAG00000010963	ENSSPAG00000010976	ENSSPAG00000010989	alkbh5 (ENSSPAG00000011009)	mief2 (ENSSPAG00000011024)	smcr8b (ENSSPAG00000011035)	PTCD1 (ENSSPAG00000011049)	ENSSPAG00000011060	ENSSPAG00000011070	ENSSPAG00000011106	ENSSPAG00000011118	ENSSPAG00000011136	pin1 (ENSSPAG00000011171) #23	UBL5 (ENSSPAG00000011192) #22	VAV1 (ENSSPAG00000011208)	ENSSPAG00000011354	TRIP10 (ENSSPAG00000011465)	MFAP4 (ENSSPAG00000012644)	ENSSPAG00000012654
Atherinomorphae	ANCESTRAL SPECIES	20	ENSGT00940000165949	ENSGT00390000002886.a.a.a	ENSGT00940000156222.a.b	ENSGT00940000155335.s.a	ENSGT00930000151032.A.c.a	ENSGT00390000009298	ENSGT00390000013127.b	ENSGT00400000022459	ENSGT00390000010052.b	ENSGT00940000153974.A	ENSGT00390000015109	ENSGT00950000182960.a.a.b.e.b	ENSGT01100000263598	ENSGT00530000063725.p.f.d	ENSGT00640000091578 #23	ENSGT00390000001945 #22	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a.b	ENSGT00940000154615.i.a.b	ENSGT00940000159148.b #24	ENSGT00950000183249	ENSGT00940000178300	ENSGT00940000154535.B	ENSGT00940000155412.a.a.b ##26	ENSGT00390000014423	ENSGT00940000157752	ENSGT00950000183157.a.a.b.d	ENSGT00940000163679	ENSGT00950000183060.a.a.d.a	ENSGT01070000253744.a.a.a.b.a.a
Oryzias	ANCESTRAL SPECIES	15	ENSGT00390000002164.b	ENSGT00940000165949	ENSGT00390000002886.a.a.a	ENSGT00940000156222.a.b	ENSGT00930000151032.A.c.a	ENSGT00390000009298	ENSGT00390000013127.b	ENSGT00400000022459	ENSGT00390000010052.b	ENSGT00940000153974.A	ENSGT00390000015109	ENSGT00950000182960.a.a.b.e.b	ENSGT01100000263598	ENSGT00530000063725.p.f.d	ENSGT00640000091578 #23	ENSGT00390000001945 #22	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a.b	ENSGT00940000154615.i.a.b	ENSGT00940000159148.b #24	ENSGT00950000183249	ENSGT00940000154535.B	ENSGT00940000155412.a.a.b ##26	ENSGT00390000014423	ENSGT00940000157752	ENSGT00950000183157.a.a.b.d	ENSGT00940000163679	ENSGT00950000183060.a.a.d.a	ENSGT00940000158717.`b.b	ENSGT01070000253744.a.a.a.b.a.a
Oryzias_a	ANCESTRAL SPECIES	26	ENSGT00940000173775	ENSGT00940000165949	ENSGT00390000002886.a.a.a	ENSGT00940000156222.a.b	ENSGT00930000151032.A.c.a	ENSGT00390000009298	ENSGT00390000013127.b	ENSGT00400000022459	ENSGT00390000010052.b	ENSGT00940000153974.A	ENSGT00390000015109	ENSGT00950000182960.a.a.b.e.b	ENSGT01100000263598	ENSGT00530000063725.p.f.d	ENSGT00640000091578 #23	ENSGT00390000001945 #22	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a.b	ENSGT00940000154615.i.a.b	ENSGT00940000159148.b #24	ENSGT00950000183249	ENSGT00940000154535.B	ENSGT00940000155412.a.a.b ##26	ENSGT00390000014423	ENSGT00940000157752	ENSGT00950000183157.a.a.b.d	ENSGT00940000163679	ENSGT00950000183060.a.a.d.a	ENSGT00940000158717.`b.b	ENSGT01070000253744.a.a.a.b.a.a
Chinese medaka	MODERN SPECIES	973	arpc1a (ENSOSIG00000015220)	ENSOSIG00000015221	ENSOSIG00000015222	abcg2c (ENSOSIG00000015227)	hapstr1b (ENSOSIG00000015764)	ENSOSIG00000015781	alkbh5 (ENSOSIG00000015899)	mief2 (ENSOSIG00000015901)	ENSOSIG00000015902	ENSOSIG00000015907	PTCD1 (ENSOSIG00000015915)	fbxl18 (ENSOSIG00000015916)	actb1 (ENSOSIG00000015919)	ENSOSIG00000015974	pin1 (ENSOSIG00000016011) #23	UBL5 (ENSOSIG00000016012) #22	VAV1 (ENSOSIG00000016014)	ENSOSIG00000016158	TRIP10 (ENSOSIG00000016166)	MFAP4 (ENSOSIG00000016168)	OLFM2 (ENSOSIG00000016172) #24	rdh8b (ENSOSIG00000016376) ##26	ENSOSIG00000016377	PLK1 (ENSOSIG00000016380)	ENSOSIG00000016514	ENSOSIG00000016516	ttyh3b (ENSOSIG00000016520)	ENSOSIG00000016522
Japanese Medaka HdrR	MODERN SPECIES		abcg2c (ENSORLG00000009145)	hapstr1b (ENSORLG00000022770)	ENSORLG00000027721	ENSORLG00000009184	ENSORLG00000030000	alkbh5 (ENSORLG00000009235)	mief2 (ENSORLG00000009240)	ENSORLG00000009252	ENSORLG00000009263	PTCD1 (ENSORLG00000009275)	fbxl18 (ENSORLG00000009288)	actb1 (ENSORLG00000009309)	ENSORLG00000022786	ENSORLG00000019573	pin1 (ENSORLG00000009334) #23	UBL5 (ENSORLG00000023784) #22	VAV1 (ENSORLG00000009385)	ENSORLG00000009393	TRIP10 (ENSORLG00000009436)	ENSORLG00000009446	ENSORLG00000009484 #24	ENSORLG00000024788	ENSORLG00000022665	ENSORLG00000022633	rdh8b (ENSORLG00000009566) ##26	ENSORLG00000024728	PLK1 (ENSORLG00000009603)	ENSORLG00000009620	ENSORLG00000009629	ENSORLG00000028597	ttyh3b (ENSORLG00000009692)
Oryzias_b	ANCESTRAL SPECIES	21	ENSGT00940000165949	ENSGT00390000002886.a.a.a	ENSGT00940000156222.a.b	ENSGT00940000155335.s.a	ENSGT00930000151032.A.c.a	ENSGT00390000009298	ENSGT00390000013127.b	ENSGT00400000022459	ENSGT00390000010052.b	ENSGT00940000153974.A	ENSGT00390000015109	ENSGT00950000182960.a.a.b.e.b	ENSGT01100000263598	ENSGT00530000063725.p.f.d	ENSGT00640000091578 #23	ENSGT00390000001945 #22	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a.b	ENSGT00940000154615.i.a.b	ENSGT00940000159148.b #24	ENSGT00950000183249	ENSGT00940000154535.B	ENSGT00940000155412.a.a.b ##26	ENSGT00390000014423	ENSGT00940000157752	ENSGT00950000183157.a.a.b.d	ENSGT00940000163679	ENSGT00950000183060.a.a.d.a	ENSGT00940000158717.`b.a	ENSGT01070000253744.a.a.a.b.a.a
Javanese ricefish	MODERN SPECIES		ENSOJAG00000015322	abcg2c (ENSOJAG00000015025)	hapstr1b (ENSOJAG00000015004)	ENSOJAG00000014874	ENSOJAG00000014819	alkbh5 (ENSOJAG00000014815)	mief2 (ENSOJAG00000014808)	ENSOJAG00000014734	ENSOJAG00000014711	PTCD1 (ENSOJAG00000014663)	fbxl18 (ENSOJAG00000014573)	ACTG1 (ENSOJAG00000014512)	ENSOJAG00000014504	ENSOJAG00000014496	pin1 (ENSOJAG00000014472) #23	UBL5 (ENSOJAG00000014456) #22	VAV1 (ENSOJAG00000014407)	ENSOJAG00000014365	TRIP10 (ENSOJAG00000014238)	MFAP4 (ENSOJAG00000014225)	OLFM2 (ENSOJAG00000014220) #24	rdh8b (ENSOJAG00000011956) ##26	PLK1 (ENSOJAG00000011874)	ENSOJAG00000011861	ENSOJAG00000011852	ttyh3b (ENSOJAG00000011786)	ENSOJAG00000011496	ENSOJAG00000011472	c3b.2 (ENSOJAG00000011284)	yju2b (ENSOJAG00000011228)	ENSOJAG00000011206
Indian medaka	MODERN SPECIES	35	hapstr1b (ENSOMEG00000021142)	ENSOMEG00000021095	MYO15A (ENSOMEG00000020933)	alkbh5 (ENSOMEG00000020820)	mief2 (ENSOMEG00000020791)	ENSOMEG00000020754	ENSOMEG00000020666	PTCD1 (ENSOMEG00000020627)	fbxl18 (ENSOMEG00000020603)	actb1 (ENSOMEG00000020586)	ENSOMEG00000020552	ENSOMEG00000020498	ENSOMEG00000020478	ENSOMEG00000020461	pin1 (ENSOMEG00000020434) #23	UBL5 (ENSOMEG00000020396) #22	ENSOMEG00000020356	ENSOMEG00000020340	ENSOMEG00000020324	ENSOMEG00000020299	TRIP10 (ENSOMEG00000020273)	ENSOMEG00000020213	MFAP4 (ENSOMEG00000020200)	OLFM2 (ENSOMEG00000020163) #24	ENSOMEG00000020104	ENSOMEG00000020094	rdh8b (ENSOMEG00000020069) ##26	ENSOMEG00000020024	PLK1 (ENSOMEG00000019980)	ENSOMEG00000019920	ENSOMEG00000019896
Cyprinodontiformes	ANCESTRAL SPECIES	18	ENSGT00940000165949	ENSGT00390000002886.a.a.a	ENSGT00940000156222.a.b	ENSGT00940000155335.s.a	ENSGT00930000151032.A.c.a	ENSGT00390000009298	ENSGT00390000013127.b	ENSGT00400000022459	ENSGT00390000010052.b	ENSGT00940000153974.A	ENSGT00390000015109	ENSGT00950000182960.a.a.b.e.b	ENSGT01100000263598	ENSGT00530000063725.p.f.d	ENSGT00640000091578 #23	ENSGT00390000001945 #22	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a.b	ENSGT00940000154615.i.a.b	ENSGT00940000159148.b #24	ENSGT00950000183249	ENSGT00940000178300	ENSGT00940000154535.B	ENSGT00940000155412.a.a.b ##26	ENSGT00390000014423	ENSGT00940000157752	ENSGT00950000183157.a.a.b.d	ENSGT00940000163679	ENSGT00950000183060.a.a.d.a	ENSGT01070000253744.a.a.a.b.a.a
Cyprinodontoidei	ANCESTRAL SPECIES	24	ENSGT00940000173775	ENSGT00940000165949	ENSGT00390000002886.a.a.a	ENSGT00940000156222.a.b	ENSGT00940000155335.s.a	ENSGT00930000151032.A.c.a	ENSGT00390000009298	ENSGT00390000013127.b	ENSGT00400000022459	ENSGT00390000010052.b	ENSGT00940000153974.A	ENSGT00390000015109	ENSGT00950000182960.a.a.b.e.b	ENSGT01100000263598	ENSGT00640000091578 #23	ENSGT00390000001945 #22	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a.b	ENSGT00940000159148.b #24	ENSGT00950000183249	ENSGT00940000154535.B	ENSGT00940000155412.a.a.b ##26	ENSGT00390000014423	ENSGT00940000157752	ENSGT00950000183157.a.a.b.d	ENSGT00940000163679	ENSGT00950000183060.a.a.d.a	ENSGT01070000253744.a.a.a.b.a.a	ENSGT00390000001316	ENSGT00940000161391.b
Poeciliinae	ANCESTRAL SPECIES	27	ENSGT00940000173775	ENSGT00940000165949	ENSGT00390000002886.a.a.a	ENSGT00940000156222.a.b	ENSGT00940000155335.s.a	ENSGT00930000151032.A.c.a	ENSGT00390000009298	ENSGT00390000013127.b	ENSGT00400000022459	ENSGT00390000010052.b	ENSGT00940000153974.A	ENSGT00390000015109	ENSGT00950000182960.a.a.b.e.b	ENSGT01100000263598	ENSGT00640000091578 #23	ENSGT00390000001945 #22	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a.b	ENSGT00940000159148.b #24	ENSGT00950000183249	ENSGT00940000154535.B	ENSGT00940000155412.a.a.b ##26	ENSGT00390000014423	ENSGT00940000157752	ENSGT00950000183157.a.a.b.d	ENSGT00940000163679	ENSGT00950000183060.a.a.d.a	ENSGT00940000155128.a.b.a.b	ENSGT00950000183040.A.b.g	ENSGT00390000000973.a.b
Poecilia	ANCESTRAL SPECIES	31	ENSGT00940000173775	ENSGT00940000165949	ENSGT00390000002886.a.a.a	ENSGT00940000156222.a.b	ENSGT00940000155335.s.a	ENSGT00930000151032.A.c.a	ENSGT00390000009298	ENSGT00390000013127.b	ENSGT00400000022459	ENSGT00390000010052.b	ENSGT00940000153974.A	ENSGT00390000015109	ENSGT00950000182960.a.a.b.e.b	ENSGT01100000263598	ENSGT00640000091578 #23	ENSGT00390000001945 #22	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a.b	ENSGT00940000159148.b #24	ENSGT00940000154535.B	ENSGT01000000214708.a.b	ENSGT00940000155412.a.a.b ##26	ENSGT00390000014423	ENSGT00940000157752	ENSGT00950000183157.a.a.b.d	ENSGT00940000163679	ENSGT00950000183060.a.a.d.a	ENSGT00940000155128.a.b.a.b	ENSGT00950000183040.A.b.g.c	ENSGT00390000000973.a.b
NAME_6	ANCESTRAL SPECIES	294						ENSGT00930000151032.A.c.a	ENSGT00390000009298	ENSGT00390000013127.b	ENSGT00400000022459	ENSGT00390000010052.b	ENSGT00940000153974.A	ENSGT00390000015109	ENSGT00950000182960.a.a.b.e.b	ENSGT01100000263598	ENSGT00640000091578 #23	ENSGT00390000001945 #22	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a.b	ENSGT00940000159148.b #24	ENSGT00940000154535.B
Amazon molly	MODERN SPECIES	284			TRIP10 (ENSPFOG00000002354)	OLFM2 (ENSPFOG00000002534) #24	col5a3b (ENSPFOG00000002675)	ENSPFOG00000023726	alkbh5 (ENSPFOG00000004159)	mief2 (ENSPFOG00000004212)	ENSPFOG00000004305	ENSPFOG00000004412	PTCD1 (ENSPFOG00000004458)	fbxl18 (ENSPFOG00000004651)	ENSPFOG00000004727	ENSPFOG00000004812	pin1 (ENSPFOG00000004816) #23	UBL5 (ENSPFOG00000004822) #22	VAV1 (ENSPFOG00000004862)	ENSPFOG00000005305	NPY2R (ENSPFOG00000005587)	pdlim3a (ENSPFOG00000005597)	SORBS2 (ENSPFOG00000005667)	ENSPFOG00000005883	cyp4v2a (ENSPFOG00000005945)	ENSPFOG00000021844	mtnr1aa (ENSPFOG00000023633)	fat1a (ENSPFOG00000006025)	frg1 (ENSPFOG00000006721)	asah1b (ENSPFOG00000006888)	pcm1 (ENSPFOG00000007075)	SART1 (ENSPFOG00000019883)	osbp (ENSPFOG00000007407)
Sailfin molly	MODERN SPECIES	282										ENSPLAG00000011162	PTCD1 (ENSPLAG00000011051)	fbxl18 (ENSPLAG00000011044)	ENSPLAG00000000243	ENSPLAG00000011027	pin1 (ENSPLAG00000011019) #23	UBL5 (ENSPLAG00000011003) #22	VAV1 (ENSPLAG00000010979)	ENSPLAG00000010910	TRIP10 (ENSPLAG00000010859)	OLFM2 (ENSPLAG00000010856) #24	ENSPLAG00000010837	ENSPLAG00000010831	alkbh5 (ENSPLAG00000010799)	mief2 (ENSPLAG00000010776)
Guppy	MODERN SPECIES	439	arpc1b (ENSPREG00000000049)	arpc1a (ENSPREG00000000050)	abcg2c (ENSPREG00000000051)	hapstr1b (ENSPREG00000000052)	ENSPREG00000000053	ENSPREG00000000054	alkbh5 (ENSPREG00000000055)	mief2 (ENSPREG00000000056)	ENSPREG00000000057	ENSPREG00000000058	PTCD1 (ENSPREG00000000059)	fbxl18 (ENSPREG00000000060)	ENSPREG00000000061	ENSPREG00000000062	pin1 (ENSPREG00000000063) #23	UBL5 (ENSPREG00000000064) #22	VAV1 (ENSPREG00000000065)	ENSPREG00000000066	TRIP10 (ENSPREG00000000067)	olfm2b (ENSPREG00000000068) #24	ENSPREG00000000069	ENSPREG00000000070	ENSPREG00000000071	rdh8b (ENSPREG00000000072) ##26	PLK1 (ENSPREG00000000073)	ENSPREG00000000074	ENSPREG00000000075	ttyh3b (ENSPREG00000000076)	FHDC1 (ENSPREG00000000077)	arfip1 (ENSPREG00000000078)	FAM193A (ENSPREG00000000079)
Platyfish	MODERN SPECIES	19	arpc1a (ENSXMAG00000003448)	ENSXMAG00000021146	abcg2b (ENSXMAG00000003423)	hapstr1b (ENSXMAG00000003416)	ENSXMAG00000000907	MYO15A (ENSXMAG00000015490)	alkbh5 (ENSXMAG00000015514)	mief2 (ENSXMAG00000015519)	ENSXMAG00000022863	ENSXMAG00000015530	PTCD1 (ENSXMAG00000015540)	fbxl18 (ENSXMAG00000015544)	ENSXMAG00000015551	ENSXMAG00000024310	pin1 (ENSXMAG00000015557) #23	UBL5 (ENSXMAG00000027727) #22	VAV1 (ENSXMAG00000015563)	ENSXMAG00000015604	ENSXMAG00000028155	TRIP10 (ENSXMAG00000026834)	OLFM2 (ENSXMAG00000009450) #24	ENSXMAG00000028030	ENSXMAG00000023323	rdh8b (ENSXMAG00000012815) ##26	ENSXMAG00000012831	PLK1 (ENSXMAG00000012832)	ENSXMAG00000012851	ENSXMAG00000012858	ttyh3b (ENSXMAG00000012860)	ENSXMAG00000012881	arfip1 (ENSXMAG00000008121)
NAME_4	ANCESTRAL SPECIES	176	ENSGT00940000162658.b	ENSGT00940000165949	ENSGT00390000002886.a.a.a	ENSGT00940000156222.a.b	ENSGT00940000155335.s.a	ENSGT00930000151032.A.c.a	ENSGT00390000009298	ENSGT00390000013127.b	ENSGT00400000022459	ENSGT00390000010052.b	ENSGT00940000153974.A	ENSGT00390000015109	ENSGT00950000182960.a.a.b.e.b	ENSGT01100000263598	ENSGT00640000091578 #23	ENSGT00390000001945 #22	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a.b
Sheepshead minnow	MODERN SPECIES	1255													ENSCVAG00000012884	ENSCVAG00000012877	pin1 (ENSCVAG00000012853) #23	UBL5 (ENSCVAG00000012829) #22	VAV1 (ENSCVAG00000012809)	ENSCVAG00000012688	TRIP10 (ENSCVAG00000012635)
Mummichog	MODERN SPECIES	2496	abcg2c (ENSFHEG00000012869)	hapstr1b (ENSFHEG00000012815)	ENSFHEG00000012781	ENSFHEG00000012696	ENSFHEG00000012525	mief2 (ENSFHEG00000012519)	ENSFHEG00000012508	ENSFHEG00000012501	PTCD1 (ENSFHEG00000012491)	fbxl18 (ENSFHEG00000012475)	ENSFHEG00000012469	ENSFHEG00000012458	ENSFHEG00000012447	ENSFHEG00000012440	pin1 (ENSFHEG00000012428) #23	UBL5 (ENSFHEG00000012408) #22	VAV1 (ENSFHEG00000012393)	ENSFHEG00000012299	TRIP10 (ENSFHEG00000012284)
Aplocheiloidei	ANCESTRAL SPECIES	17	ENSGT00940000177139	ENSGT00940000165949	ENSGT00390000002886.a.a.a	ENSGT00940000156222.a.b	ENSGT00940000155335.s.a	ENSGT00390000009298	ENSGT00390000013127.b	ENSGT00400000022459	ENSGT00390000010052.b	ENSGT00940000153974.A	ENSGT00390000015109	ENSGT00950000182960.a.a.b.e.b	ENSGT01100000263598	ENSGT00530000063725.p.f.d	ENSGT00640000091578 #23	ENSGT00390000001945 #22	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a.b	ENSGT00940000154615.i.a.b	ENSGT00940000159148.b #24	ENSGT00950000183249	ENSGT00940000178300	ENSGT00940000154535.B	ENSGT00940000155412.a.a.b ##26	ENSGT00390000014423	ENSGT00940000157752	ENSGT00950000183157.a.a.b.d	ENSGT00940000163679	ENSGT00950000183060.a.a.d.a	ENSGT01070000253744.a.a.a.b.a.a
Mangrove rivulus	MODERN SPECIES		ENSKMAG00000008189	abcg2c (ENSKMAG00000008205)	hapstr1b (ENSKMAG00000008256)	ENSKMAG00000008300	MYO15A (ENSKMAG00000008445)	alkbh5 (ENSKMAG00000008615)	mief2 (ENSKMAG00000008644)	ENSKMAG00000008664	ENSKMAG00000008693	PTCD1 (ENSKMAG00000008708)	fbxl18 (ENSKMAG00000008729)	ENSKMAG00000008747	ENSKMAG00000008767	ENSKMAG00000008781	pin1 (ENSKMAG00000008796) #23	UBL5 (ENSKMAG00000008819) #22	VAV1 (ENSKMAG00000008858)	ENSKMAG00000009029	TRIP10 (ENSKMAG00000009041)	MFAP4 (ENSKMAG00000009058)	OLFM2 (ENSKMAG00000009093) #24	ENSKMAG00000009120	ENSKMAG00000009130	ENSKMAG00000009144	rdh8b (ENSKMAG00000009171) ##26	ENSKMAG00000009182	PLK1 (ENSKMAG00000009205)	ENSKMAG00000009244	ENSKMAG00000009273	ttyh3b (ENSKMAG00000009311)	ENSKMAG00000009372
Turquoise killifish	MODERN SPECIES	1611	ENSNFUG00015001922	ENSNFUG00015001915	ENSNFUG00015001910	GLIS2 (ENSNFUG00015001896)	akap8l (ENSNFUG00015001882)	ENSNFUG00015001866	ENSNFUG00015001853	LPAR2B (ENSNFUG00015001847)	CAMSAP3 (ENSNFUG00015001822)	ENSNFUG00015001781	GPR108 (ENSNFUG00015001508)	ENSNFUG00015001349	Nfu_g_1_007201 (ENSNFUG00015001337)	ENSNFUG00015001324	pin1 (ENSNFUG00015001320) #23	UBL5 (ENSNFUG00015001318) #22	VAV1 (ENSNFUG00015001308)	ENSNFUG00015001300	TRIP10 (ENSNFUG00015001050)	OLFM2B (ENSNFUG00015000953) #24	rdh8b (ENSNFUG00015000766) ##26	PALB2 (ENSNFUG00015000754)	PLK1 (ENSNFUG00015000714)	FSCN1 (ENSNFUG00015000667)	ENSNFUG00015000642	TTYH3B (ENSNFUG00015000614)	MFNG (ENSNFUG00015000571)	ENSNFUG00015000555	mad1l1 (ENSNFUG00015000517)	ELFN1B (ENSNFUG00015000489)	PARN (ENSNFUG00015000400)
Percomorphaceae_C	ANCESTRAL SPECIES	3	ENSGT00940000182552	ENSGT00930000151032.A.c.a	ENSGT00390000009298	ENSGT00390000013127.b	ENSGT00390000010052.b	ENSGT00400000022459	ENSGT00940000153974.A	ENSGT00390000015109	ENSGT00950000182960.a.a.b.e.b	ENSGT01100000263598	ENSGT00530000063725.p.e.b	ENSGT00530000063725.p.e.a	ENSGT00530000063725.p.f	ENSGT00990000204057	ENSGT00640000091578 #23	ENSGT00390000001945 #22	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a.b	ENSGT00940000154615.i.a.b	ENSGT01060000248589.A.d	ENSGT00940000159148.b #24	ENSGT00940000162394 #25	ENSGT00950000183249	ENSGT00940000154535.B	ENSGT00940000155412.a.a.b ##26	ENSGT00390000014423	ENSGT00940000157752	ENSGT00940000163566.a.a	ENSGT00950000183157.a.a.b.d	ENSGT00940000163679
Percomorphaceae_D	ANCESTRAL SPECIES		ENSGT00940000155335.s.a	ENSGT00940000182552	ENSGT00930000151032.A.c.a	ENSGT00390000009298	ENSGT00390000013127.b	ENSGT00390000010052.b	ENSGT00400000022459	ENSGT00940000153974.A	ENSGT00390000015109	ENSGT00950000182960.a.a.b.e.b	ENSGT01100000263598	ENSGT00530000063725.p.e.b	ENSGT00530000063725.p.e.a	ENSGT00530000063725.p.f	ENSGT00640000091578 #23	ENSGT00390000001945 #22	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a.b	ENSGT00940000154615.i.a.b	ENSGT00940000159148.b #24	ENSGT00950000183249	ENSGT00940000154535.B	ENSGT00940000155412.a.a.b ##26	ENSGT00390000014423	ENSGT00940000157752	ENSGT00940000163566.a.a	ENSGT00950000183157.a.a.b.d	ENSGT00940000163679	ENSGT00950000183060.a.a.d.a	ENSGT01070000253744.a.a.a.b.a.a
Anabantaria	ANCESTRAL SPECIES	1	ENSGT00940000165949	ENSGT00390000002886.a.a.a	ENSGT00940000156222.a.b	ENSGT00940000155335.s.a	ENSGT00930000151032.A.c.a	ENSGT00390000009298	ENSGT00390000013127.b	ENSGT00390000010052.b	ENSGT00400000022459	ENSGT00940000153974.A	ENSGT00390000015109	ENSGT00950000182960.a.a.b.e.b	ENSGT01100000263598	ENSGT00530000063725.p.e.a	ENSGT00640000091578 #23	ENSGT00390000001945 #22	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a.b	ENSGT00940000154615.i.a.b	ENSGT00940000159148.b #24	ENSGT00940000154535.B	ENSGT00940000155412.a.a.b ##26	ENSGT00390000014423	ENSGT00940000157752	ENSGT00940000163566.a.a	ENSGT00950000183157.a.a.b.d	ENSGT00940000163679	ENSGT00950000183060.a.a.d.a	ENSGT01070000253744.a.a.a.b.a.a	ENSGT00390000001316
Zig-zag eel	MODERN SPECIES		ENSMAMG00000008121	ENSMAMG00000024569	abcg2b (ENSMAMG00000008060)	ENSMAMG00000008048	ENSMAMG00000007991	ENSMAMG00000025724	alkbh5 (ENSMAMG00000007695)	mief2 (ENSMAMG00000007672)	smcr8b (ENSMAMG00000007656)	zgc:112980 (ENSMAMG00000007639)	ENSMAMG00000007623	fbxl18 (ENSMAMG00000007615)	ENSMAMG00000007586	ENSMAMG00000007568	ENSMAMG00000007551 #23	ENSMAMG00000007541 #22	VAV1 (ENSMAMG00000007429)	ENSMAMG00000007383	TRIP10 (ENSMAMG00000007362)	ENSMAMG00000007354	ENSMAMG00000007338 #24	ENSMAMG00000025200	ENSMAMG00000007265	ENSMAMG00000007244	ENSMAMG00000007199	ENSMAMG00000007185	ENSMAMG00000007173	ENSMAMG00000007123	ENSMAMG00000007074	ENSMAMG00000007063	ENSMAMG00000007006
Anabantoidei	ANCESTRAL SPECIES		ENSGT00390000002164.b	ENSGT00940000165949	ENSGT00390000002886.a.a.a	ENSGT00940000156222.a.b	ENSGT00940000155335.s.a	ENSGT00390000009298	ENSGT00390000013127.b	ENSGT00390000010052.b	ENSGT00400000022459	ENSGT00940000153974.A	ENSGT00390000015109	ENSGT00950000182960.a.a.b.e.b	ENSGT01100000263598	ENSGT00530000063725.p.e.a	ENSGT00640000091578 #23	ENSGT00390000001945 #22	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a.b	ENSGT00940000154615.i.a.b	ENSGT00940000159148.b #24	ENSGT00940000154535.B	ENSGT00940000155412.a.a.b ##26	ENSGT00390000014423	ENSGT00940000157752	ENSGT00940000163566.a.a	ENSGT00950000183157.a.a.b.d	ENSGT00940000163679	ENSGT00950000183060.a.a.d.a	ENSGT00950000182957.b.a.b.a.a	ENSGT00390000009759
Climbing perch	MODERN SPECIES		ENSATEG00000007784	abcg2b (ENSATEG00000007498)	ENSATEG00000007469	ENSATEG00000007389	ENSATEG00000007193	alkbh5 (ENSATEG00000007186)	mief2 (ENSATEG00000007155)	smcr8b (ENSATEG00000007148)	zgc:112980 (ENSATEG00000007024)	ENSATEG00000007016	fbxl18 (ENSATEG00000007008)	ENSATEG00000006980	ENSATEG00000006970	ENSATEG00000006475	ENSATEG00000006436 #23	ENSATEG00000006411 #22	VAV1 (ENSATEG00000006284)	ENSATEG00000006276	TRIP10 (ENSATEG00000006265)	ENSATEG00000029982	olfm2b (ENSATEG00000006219) #24	ENSATEG00000005712	rdh8b (ENSATEG00000005674) ##26	ENSATEG00000005657	ENSATEG00000028057	ENSATEG00000027547	ENSATEG00000005392	ENSATEG00000026258	ENSATEG00000005359	ENSATEG00000005335	ENSATEG00000005319
Siamese fighting fish	MODERN SPECIES		ENSBSLG00000001006	abcg2c (ENSBSLG00000000975)	hapstr1b (ENSBSLG00000000964)	ENSBSLG00000000961	alkbh5 (ENSBSLG00000000934)	mief2 (ENSBSLG00000000928)	smcr8b (ENSBSLG00000000921)	ENSBSLG00000000913	PTCD1 (ENSBSLG00000000908)	fbxl18 (ENSBSLG00000000904)	actb1 (ENSBSLG00000000900)	ENSBSLG00000000897	ENSBSLG00000000894	ENSBSLG00000000889	pin1 (ENSBSLG00000000886) #23	UBL5 (ENSBSLG00000000884) #22	mtnr1aa (ENSBSLG00000000881)	cyp4v2a (ENSBSLG00000000870)	ENSBSLG00000000868	SORBS2 (ENSBSLG00000000797)	pdlim3a (ENSBSLG00000000787)	ENSBSLG00000000784	ENSBSLG00000000781	lrata (ENSBSLG00000000779)	fgg (ENSBSLG00000000767)	plrg1 (ENSBSLG00000000524)	ENSBSLG00000000433	sfrp2 (ENSBSLG00000000426)	ENSBSLG00000000419	FAM193A (ENSBSLG00000000367)	arfip1 (ENSBSLG00000000327)
Carangaria	ANCESTRAL SPECIES		ENSGT00940000155335.s.a	ENSGT00940000182552	ENSGT00930000151032.A.c.a	ENSGT00390000009298	ENSGT00390000013127.b	ENSGT00390000010052.b	ENSGT00400000022459	ENSGT00940000153974.A	ENSGT00390000015109	ENSGT00950000182960.a.a.b.e.b	ENSGT01100000263598	ENSGT00530000063725.p.e.b	ENSGT00530000063725.p.e.a	ENSGT00530000063725.p.f	ENSGT00640000091578 #23	ENSGT00390000001945 #22	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a.b	ENSGT00940000154615.i.a.b	ENSGT00940000159148.b #24	ENSGT00950000183249	ENSGT00940000154535.B	ENSGT00940000155412.a.a.b ##26	ENSGT00390000014423	ENSGT00940000157752	ENSGT00940000163566.a.a	ENSGT00950000183157.a.a.b.d	ENSGT00940000163679	ENSGT00950000183060.a.a.d.a	ENSGT01070000253744.a.a.a.b.a.a
Pleuronectoidei	ANCESTRAL SPECIES	26	ENSGT00940000156222.a.b	ENSGT00940000155335.s.a	ENSGT00940000167865	ENSGT00930000151032.A.c.a	ENSGT00390000009298	ENSGT00390000013127.b	ENSGT00390000010052.b	ENSGT00400000022459	ENSGT00940000153974.A	ENSGT00390000015109	ENSGT00950000182960.a.a.b.e.b	ENSGT00950000182960.a.a.b.e.a	ENSGT01100000263598	ENSGT00530000063725.p.e.b	ENSGT00640000091578 #23	ENSGT00390000001945 #22	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a.b	ENSGT00940000154615.i.a.b	ENSGT00940000159148.b #24	ENSGT00950000183249	ENSGT00940000154535.B	ENSGT00940000155412.a.a.b ##26	ENSGT00390000014423	ENSGT00940000157752	ENSGT00940000163566.a.a	ENSGT00950000183157.a.a.b.d	ENSGT00940000163679	ENSGT00950000183060.a.a.d.a	ENSGT01070000253744.a.a.a.b.a.a
Turbot	MODERN SPECIES	20	ENSSMAG00000000159	ENSSMAG00000000164	ENSSMAG00000033041	ENSSMAG00000000181	ENSSMAG00000030960	alkbh5 (ENSSMAG00000000195)	mief2 (ENSSMAG00000000199)	smcr8b (ENSSMAG00000000203)	ENSSMAG00000000211	ENSSMAG00000000218	fbxl18 (ENSSMAG00000000229)	actb1 (ENSSMAG00000000233)	ENSSMAG00000029471	ENSSMAG00000000242	ENSSMAG00000000252 #23	ENSSMAG00000000260 #22	VAV1 (ENSSMAG00000000269)	ENSSMAG00000000306	TRIP10 (ENSSMAG00000000331)	ENSSMAG00000037037	ENSSMAG00000000520 #24	ENSSMAG00000021482	ENSSMAG00000000530 ##26	ENSSMAG00000000536	ENSSMAG00000000544	ENSSMAG00000000565	ENSSMAG00000021545	ENSSMAG00000000584	ENSSMAG00000000631	ENSSMAG00000000639	ENSSMAG00000000652
Tongue sole	MODERN SPECIES	19	ENSCSEG00000002280	abcg2c (ENSCSEG00000002283)	hapstr1b (ENSCSEG00000002290)	ENSCSEG00000002295	ENSCSEG00000002302	ENSCSEG00000002307	ENSCSEG00000002317	alkbh5 (ENSCSEG00000002327)	mief2 (ENSCSEG00000002331)	smcr8b (ENSCSEG00000002336)	zgc:112980 (ENSCSEG00000002362)	PTCD1 (ENSCSEG00000002378)	fbxl18 (ENSCSEG00000002382)	ENSCSEG00000002389	pin1 (ENSCSEG00000002396) #23	UBL5 (ENSCSEG00000002401) #22	VAV1 (ENSCSEG00000002409)	ENSCSEG00000002449	TRIP10 (ENSCSEG00000002571)	MFAP4 (ENSCSEG00000002584)	olfm2b (ENSCSEG00000002585) #24	ENSCSEG00000002589	tacr3l (ENSCSEG00000002593)	cldnd1b (ENSCSEG00000002603)	acy3.2 (ENSCSEG00000002608)	glb1 (ENSCSEG00000002616)	ccdc86 (ENSCSEG00000002637)	sgms2a (ENSCSEG00000002639)	papss1 (ENSCSEG00000002644)	dkk2 (ENSCSEG00000002656)	aimp1a (ENSCSEG00000002665)
Carangaria_A	ANCESTRAL SPECIES	14	ENSGT00940000156222.a.b	ENSGT00940000182552	ENSGT00930000151032.A.c.a	ENSGT00390000009298	ENSGT00390000013127.b	ENSGT00390000010052.b	ENSGT00400000022459	ENSGT00940000153974.A	ENSGT00390000015109	ENSGT00950000182960.a.a.b.e.b	ENSGT01100000263598	ENSGT00530000063725.p.e.b	ENSGT00530000063725.p.e.a	ENSGT00530000063725.p.f	ENSGT00640000091578 #23	ENSGT00390000001945 #22	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a.b	ENSGT00940000154615.i.a.b	ENSGT00940000159148.b #24	ENSGT00950000183249	ENSGT00940000154535.B	ENSGT00940000155412.a.a.b ##26	ENSGT00940000157752	ENSGT00940000163566.a.a	ENSGT00950000183157.a.a.b.d	ENSGT00940000163679	ENSGT00950000183060.a.a.d.a	ENSGT01070000253744.a.a.a.b.a.a	ENSGT00390000001316
Seriola	ANCESTRAL SPECIES	18	ENSGT00940000156222.a.b	ENSGT00940000182552	ENSGT00930000151032.A.c.a	ENSGT00390000009298	ENSGT00390000013127.b	ENSGT00390000010052.b	ENSGT00400000022459	ENSGT00940000153974.A	ENSGT00390000015109	ENSGT00950000182960.a.a.b.e.b	ENSGT01100000263598	ENSGT00530000063725.p.e.b	ENSGT00530000063725.p.e.a	ENSGT00530000063725.p.f	ENSGT00640000091578 #23	ENSGT00390000001945 #22	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a.b	ENSGT00940000154615.i.a.b	ENSGT00940000159148.b #24	ENSGT00950000183249	ENSGT00940000154535.B	ENSGT00940000155412.a.a.b ##26	ENSGT00940000157752	ENSGT00940000163566.a.a	ENSGT00950000183157.a.a.b.d	ENSGT00940000163679	ENSGT00950000183060.a.a.d.a	ENSGT01070000253744.a.a.a.b.a.a	ENSGT00390000001316
Greater amberjack	MODERN SPECIES	13	abcg2b (ENSSDUG00000016042)	ENSSDUG00000015968	ENSSDUG00000015946	ENSSDUG00000015899	alkbh5 (ENSSDUG00000015880)	mief2 (ENSSDUG00000015872)	smcr8b (ENSSDUG00000015863)	PTCD1 (ENSSDUG00000015671)	fbxl18 (ENSSDUG00000015649)	ENSSDUG00000015634	ENSSDUG00000015606	ENSSDUG00000015586	ENSSDUG00000015430	ENSSDUG00000015363	pin1 (ENSSDUG00000015348) #23	UBL5 (ENSSDUG00000015336) #22	VAV1 (ENSSDUG00000015274)	ENSSDUG00000015235	TRIP10 (ENSSDUG00000015174)	MFAP4 (ENSSDUG00000015158)	OLFM2 (ENSSDUG00000015114) #24	ENSSDUG00000015109	ENSSDUG00000015087	rdh8b (ENSSDUG00000015069) ##26	PLK1 (ENSSDUG00000015035)	rasd3 (ENSSDUG00000015024)	rasd3 (ENSSDUG00000015016)	ENSSDUG00000015000	ENSSDUG00000014952	ttyh3b (ENSSDUG00000014909)	ENSSDUG00000014878
Yellowtail amberjack	MODERN SPECIES	3195	emx3 (ENSSLDG00000014095)	LTC4S (ENSSLDG00000014108)	MAML1 (ENSSLDG00000014125)	canx (ENSSLDG00000014150)	mgat4b (ENSSLDG00000014173)	smcr8b (ENSSLDG00000014199)	zgc:112980 (ENSSLDG00000014217)	PTCD1 (ENSSLDG00000014261)	fbxl18 (ENSSLDG00000014309)	ENSSLDG00000014332	ENSSLDG00000014362	ENSSLDG00000014378	ENSSLDG00000014616	ENSSLDG00000015653	pin1 (ENSSLDG00000015758) #23	UBL5 (ENSSLDG00000015781) #22	VAV1 (ENSSLDG00000015815)	ENSSLDG00000015879	TRIP10 (ENSSLDG00000015981)	MFAP4 (ENSSLDG00000016068)	OLFM2 (ENSSLDG00000016097) #24	ENSSLDG00000016143	ENSSLDG00000016153	rdh8b (ENSSLDG00000016188) ##26	PLK1 (ENSSLDG00000016237)	rasd3 (ENSSLDG00000016267)	ENSSLDG00000016280	ENSSLDG00000016310	ttyh3b (ENSSLDG00000016344)	ENSSLDG00000016376	ENSSLDG00000016429
Barramundi perch	DUPLICATION
Barramundi perch	MODERN SPECIES	399	hapstr1b (ENSLCAG00010007072)	ENSLCAG00010007104	ENSLCAG00010007173	ENSLCAG00010007181	alkbh5 (ENSLCAG00010007194)	mief2 (ENSLCAG00010007204)	smcr8b (ENSLCAG00010007212)	zgc:112980 (ENSLCAG00010007222)	PTCD1 (ENSLCAG00010007233)	fbxl18 (ENSLCAG00010007244)	ENSLCAG00010007316	ENSLCAG00010007517	ENSLCAG00010007529	ENSLCAG00010007539	pin1 (ENSLCAG00010007549) #23	UBL5 (ENSLCAG00010007558) #22	ENSLCAG00010007565
Barramundi perch	MODERN SPECIES	798												ENSLCAG00010011891	ENSLCAG00010011885	ENSLCAG00010011880	pin1 (ENSLCAG00010011868) #23	UBL5 (ENSLCAG00010011860) #22	ENSLCAG00010011857
Eupercaria	ANCESTRAL SPECIES	2	ENSGT00940000155335.s.a	ENSGT00930000151032.A.c.a	ENSGT00390000009298	ENSGT00390000013127.b	ENSGT00390000010052.b	ENSGT00400000022459	ENSGT00940000153974.A	ENSGT00390000015109	ENSGT00950000182960.a.a.b.e.b	ENSGT01100000263598	ENSGT00530000063725.p.e.b	ENSGT00530000063725.p.e.a	ENSGT00530000063725.p.f	ENSGT00990000204057	ENSGT00640000091578 #23	ENSGT00390000001945 #22	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a.b	ENSGT00940000154615.i.a.b	ENSGT01060000248589.A.d	ENSGT00940000159148.b #24	ENSGT00940000162394 #25	ENSGT00950000183249	ENSGT00940000154535.B	ENSGT00940000155412.a.a.b ##26	ENSGT00390000014423	ENSGT00940000157752	ENSGT00940000163566.a.a	ENSGT00950000183157.a.a.b.d	ENSGT00940000163679
Tetraodontidae	ANCESTRAL SPECIES	16	ENSGT00390000002164.b	ENSGT00940000162658.b	ENSGT00390000002886.a.a.a	ENSGT00940000156222.a.b.l	ENSGT00940000155335.s.a	ENSGT00390000009298	ENSGT00390000013127.b	ENSGT00390000010052.b	ENSGT00400000022459	ENSGT00940000153974.A	ENSGT00390000015109	ENSGT00950000182960.a.a.b.e.b	ENSGT01100000263598	ENSGT00530000063725.p.e.a	ENSGT00640000091578 #23	ENSGT00390000001945 #22	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a.b	ENSGT00940000163551.j	ENSGT00940000159148.b #24	ENSGT00940000154535.B	ENSGT00940000167399	ENSGT00970000196908	ENSGT00950000183157.a.a.b.d	ENSGT00940000163679	ENSGT00950000183060.a.a.d.a	ENSGT01070000253744.a.a.a.b.a.a	ENSGT00390000001316	ENSGT00940000161391.b	ENSGT00940000153167.A.b
Fugu	MODERN SPECIES	8	ENSTRUG00000028683	ENSTRUG00000020587	abcg2b (ENSTRUG00000012715)	hapstr1b (ENSTRUG00000012950)	ENSTRUG00000012978	alkbh5 (ENSTRUG00000013324)	mief2 (ENSTRUG00000024936)	ENSTRUG00000013435	zgc:112980 (ENSTRUG00000020136)	PTCD1 (ENSTRUG00000013471)	fbxl18 (ENSTRUG00000013524)	ACTB (ENSTRUG00000020378)	ENSTRUG00000025485	ENSTRUG00000026524	pin1 (ENSTRUG00000013606) #23	UBL5 (ENSTRUG00000013643) #22	VAV1 (ENSTRUG00000013652)	ENSTRUG00000013754	TRIP10 (ENSTRUG00000013881)	ENSTRUG00000013979	OLFM2 (ENSTRUG00000013986) #24	ENSTRUG00000032311	ENSTRUG00000029471	ENSTRUG00000014882	ENSTRUG00000014909	ttyh3b (ENSTRUG00000014928)	ENSTRUG00000029257	ENSTRUG00000033311	mad1l1 (ENSTRUG00000015158)	ENSTRUG00000020261	ELFN1 (ENSTRUG00000015197)
Tetraodon	MODERN SPECIES	10	EIF3B (ENSTNIG00000004648)	ENSTNIG00000004649	ENSTNIG00000002138	GNA12 (ENSTNIG00000008279)	hapstr1b (ENSTNIG00000008278)	ENSTNIG00000008277	MYO15A (ENSTNIG00000008276)	alkbh5 (ENSTNIG00000008275)	mief2 (ENSTNIG00000008274)	smcr8b (ENSTNIG00000008273)	zgc:112980 (ENSTNIG00000008272)	PTCD1 (ENSTNIG00000008271)	fbxl18 (ENSTNIG00000008270)	ENSTNIG00000008269	ENSTNIG00000008268	UBL5 (ENSTNIG00000008267) #22	VAV1 (ENSTNIG00000008266)	ENSTNIG00000000930	ENSTNIG00000008265	TRIP10 (ENSTNIG00000008264)	OLFM2 (ENSTNIG00000008263) #24	col5a3b (ENSTNIG00000008262)	ENSTNIG00000008261	plk1 (ENSTNIG00000008260)	ENSTNIG00000008259	ENSTNIG00000008258	ttyh3b (ENSTNIG00000008257)	ENSTNIG00000008256	ENSTNIG00000000470	mad1l1 (ENSTNIG00000008255)	ELFN1 (ENSTNIG00000008254)
Eupecaria_A	ANCESTRAL SPECIES	3	ENSGT00940000155335.s.a	ENSGT00930000151032.A.c.a	ENSGT00390000009298	ENSGT00390000013127.b	ENSGT00390000010052.b	ENSGT00400000022459	ENSGT00940000153974.A	ENSGT00390000015109	ENSGT00950000182960.a.a.b.e.b	ENSGT01100000263598	ENSGT00530000063725.p.e.b	ENSGT00530000063725.p.e.a	ENSGT00530000063725.p.f	ENSGT00990000204057	ENSGT00640000091578 #23	ENSGT00390000001945 #22	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a.b	ENSGT00940000154615.i.a.b	ENSGT01060000248589.A.d	ENSGT00940000159148.b #24	ENSGT00940000162394 #25	ENSGT00950000183249	ENSGT00940000154535.B	ENSGT00940000155412.a.a.b ##26	ENSGT00390000014423	ENSGT00940000157752	ENSGT00940000163566.a.a	ENSGT00950000183157.a.a.b.d	ENSGT00940000163679
Ballan wrasse	MODERN SPECIES	7					ENSLBEG00000007832	ENSLBEG00000007860	alkbh5 (ENSLBEG00000007886)	mief2 (ENSLBEG00000007914)	smcr8b (ENSLBEG00000007934)	zgc:112980 (ENSLBEG00000007976)	PTCD1 (ENSLBEG00000008061)	fbxl18 (ENSLBEG00000008104)	ENSLBEG00000008186	ENSLBEG00000008204	pin1 (ENSLBEG00000008241) #23	UBL5 (ENSLBEG00000008261) #22	VAV1 (ENSLBEG00000008306)	ENSLBEG00000008404	TRIP10 (ENSLBEG00000008481)	OLFM2 (ENSLBEG00000008531) #24	ENSLBEG00000008578	ENSLBEG00000008602	rdh8b (ENSLBEG00000008647) ##26	PLK1 (ENSLBEG00000008688)	rasd3 (ENSLBEG00000008774)	ENSLBEG00000008798	ENSLBEG00000008862	ttyh3b (ENSLBEG00000008948)	ENSLBEG00000009019	ENSLBEG00000009047	mad1l1 (ENSLBEG00000009069)
Eupecaria_B	ANCESTRAL SPECIES	1	ENSGT00940000155335.s.a	ENSGT00930000151032.A.c.a	ENSGT00390000009298	ENSGT00390000013127.b	ENSGT00390000010052.b	ENSGT00400000022459	ENSGT00940000153974.A	ENSGT00390000015109	ENSGT00950000182960.a.a.b.e.b	ENSGT01100000263598	ENSGT00530000063725.p.e.b	ENSGT00530000063725.p.e.a	ENSGT00530000063725.p.f	ENSGT00990000204057	ENSGT00640000091578 #23	ENSGT00390000001945 #22	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a.b	ENSGT00940000154615.i.a.b	ENSGT01060000248589.A.d	ENSGT00940000159148.b #24	ENSGT00940000154535.B	ENSGT00940000155412.a.a.b ##26	ENSGT00390000014423	ENSGT00940000157752	ENSGT00940000163566.a.a	ENSGT00950000183157.a.a.b.d	ENSGT00940000163679	ENSGT00950000183060.a.a.d.a	ENSGT01070000253744.a.a.a.b.a.a
Perciformes	ANCESTRAL SPECIES	2	ENSGT00390000002886.a.a.a	ENSGT00940000156222.a.b	ENSGT00930000151032.A.c.a	ENSGT00390000009298	ENSGT00390000013127.b	ENSGT00390000010052.b	ENSGT00400000022459	ENSGT00940000153974.A	ENSGT00390000015109	ENSGT00950000182960.a.a.b.e.b	ENSGT00530000063725.p.f	ENSGT00990000204057	ENSGT00950000182960.a.a.a.a	ENSGT01100000263598	ENSGT00640000091578 #23	ENSGT00390000001945 #22	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a.b	ENSGT00940000154615.i.a.b	ENSGT00940000159148.b #24	ENSGT00940000154535.B	ENSGT00940000155412.a.a.b ##26	ENSGT00390000014423	ENSGT00940000157752	ENSGT00940000163566.a.a	ENSGT00950000183157.a.a.b.d	ENSGT00940000163679	ENSGT00950000183060.a.a.d.a	ENSGT01070000253744.a.a.a.b.a.a	ENSGT00390000001316
Cottioidei	ANCESTRAL SPECIES	3	ENSGT00390000002164.b	ENSGT00940000162658.b	ENSGT00390000002886.a.a.a	ENSGT00940000156222.a.b	ENSGT00940000155335.s.a	ENSGT00930000151032.A.c.a	ENSGT00390000009298	ENSGT00390000013127.b	ENSGT00390000010052.b	ENSGT00400000022459	ENSGT00940000153974.A	ENSGT00390000015109	ENSGT00950000182960.a.a.b.e.b	ENSGT01100000263598	ENSGT00640000091578 #23	ENSGT00390000001945 #22	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a.b	ENSGT00940000154615.i.a.b	ENSGT00940000159148.b #24	ENSGT00940000154535.B	ENSGT00940000155412.a.a.b ##26	ENSGT00940000157752	ENSGT00940000163566.a.a	ENSGT00950000183157.a.a.b.d	ENSGT00940000163679	ENSGT00950000183060.a.a.d.a	ENSGT01070000253744.a.a.a.b.a.a	ENSGT00390000001316	ENSGT00940000161391.b
Lumpfish	MODERN SPECIES		ENSCLMG00005000750	ENSCLMG00005000746	alkbh5 (ENSCLMG00005000745)	mief2 (ENSCLMG00005000744)	smcr8b (ENSCLMG00005000742)	zgc:112980 (ENSCLMG00005000739)	PTCD1 (ENSCLMG00005000738)	fbxl18 (ENSCLMG00005000737)	ENSCLMG00005000735	ENSCLMG00005000733	ENSCLMG00005000732	ENSCLMG00005000731	ENSCLMG00005000710	ENSCLMG00005000691	pin1 (ENSCLMG00005000688) #23	UBL5 (ENSCLMG00005000687) #22	VAV1 (ENSCLMG00005000653)	ENSCLMG00005000624	TRIP10 (ENSCLMG00005000607)	ENSCLMG00005000495	olfm2b (ENSCLMG00005000376) #24	col5a3b (ENSCLMG00005000330)	rdh8b (ENSCLMG00005000318) ##26	PLK1 (ENSCLMG00005000304)	rasd3 (ENSCLMG00005000300)	FSCN1 (ENSCLMG00005000298)	ENSCLMG00005000292	TTYH3 (ENSCLMG00005000286)	ENSCLMG00005000283	ENSCLMG00005000272	mad1l1 (ENSCLMG00005000255)
Stickleback	MODERN SPECIES	4	arpc1a (ENSGACG00000016638)	abcg2b (ENSGACG00000016636)	hapstr1b (ENSGACG00000016635)	ENSGACG00000016632	MYO15A (ENSGACG00000016622)	alkbh5 (ENSGACG00000016621)	mief2 (ENSGACG00000016616)	smcr8b (ENSGACG00000016613)	zgc:112980 (ENSGACG00000016610)	PTCD1 (ENSGACG00000016607)	ENSGACG00000016606	fbxl18 (ENSGACG00000016604)	ENSGACG00000016593	ENSGACG00000016589	pin1 (ENSGACG00000016585) #23	UBL5 (ENSGACG00000016584) #22	VAV1 (ENSGACG00000016580)	ENSGACG00000016568	TRIP10 (ENSGACG00000016566)	ENSGACG00000016562	olfm2b (ENSGACG00000016561) #24	col5a3b (ENSGACG00000016535)	rdh8b (ENSGACG00000016530) ##26	PLK1 (ENSGACG00000016526)	FSCN1 (ENSGACG00000016520)	ENSGACG00000016515	ttyh3b (ENSGACG00000016508)	ENSGACG00000016506	mad1l1 (ENSGACG00000016504)	ELFN1 (ENSGACG00000016502)	hpgd (ENSGACG00000016499)
Perciformes_a	ANCESTRAL SPECIES		ENSGT00390000002886.a.a.a	ENSGT00940000156222.a.b	ENSGT00930000151032.A.c.a	ENSGT00390000009298	ENSGT00390000013127.b	ENSGT00390000010052.b	ENSGT00400000022459	ENSGT00940000153974.A	ENSGT00390000015109	ENSGT00950000182960.a.a.a.a	ENSGT01100000263598	ENSGT00950000182960.a.a.b.e.b	ENSGT00530000063725.p.f	ENSGT00990000204057	ENSGT00640000091578 #23	ENSGT00390000001945 #22	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a.b	ENSGT00940000154615.i.a.b	ENSGT00940000159148.b #24	ENSGT00940000154535.B	ENSGT00940000155412.a.a.b ##26	ENSGT00390000014423	ENSGT00940000157752	ENSGT00940000163566.a.a	ENSGT00950000183157.a.a.b.d	ENSGT00940000163679	ENSGT00950000183060.a.a.d.a	ENSGT01070000253744.a.a.a.b.a.a	ENSGT00390000001316
Pike perch	MODERN SPECIES	8	ENSSLUG00000001418	ENSSLUG00000001417	abcg2c (ENSSLUG00000001414)	hapstr1b (ENSSLUG00000001410)	ENSSLUG00000001376	ENSSLUG00000001354	alkbh5 (ENSSLUG00000001351)	mief2 (ENSSLUG00000001349)	smcr8b (ENSSLUG00000001345)	zgc:112980 (ENSSLUG00000001343)	PTCD1 (ENSSLUG00000001340)	fbxl18 (ENSSLUG00000001338)	ENSSLUG00000001329	ENSSLUG00000001326	pin1 (ENSSLUG00000001321) #23	UBL5 (ENSSLUG00000001317) #22	VAV1 (ENSSLUG00000001236)	ENSSLUG00000001190	TRIP10 (ENSSLUG00000001155)	ENSSLUG00000001129	ENSSLUG00000001126	olfm2b (ENSSLUG00000001121) #24	col5a3b (ENSSLUG00000001076)	rdh8b (ENSSLUG00000001043) ##26	PLK1 (ENSSLUG00000001032)	rasd3 (ENSSLUG00000001029)	ENSSLUG00000001024	ENSSLUG00000001019	ttyh3b (ENSSLUG00000001009)	ENSSLUG00000000998	mad1l1 (ENSSLUG00000000988)
Channel bull blenny	MODERN SPECIES		ENSCGOG00000010068	ENSCGOG00000010061	npnta (ENSCGOG00000010047)	gstcd (ENSCGOG00000010034)	ints12 (ENSCGOG00000010030)	ARHGEF38 (ENSCGOG00000010026)	TET2 (ENSCGOG00000010016)	ENSCGOG00000010014	ENSCGOG00000010013	mtap (ENSCGOG00000009991)	toporsa (ENSCGOG00000009987)	ndufb6 (ENSCGOG00000009974)	ENSCGOG00000009962	ENSCGOG00000009938	pin1 (ENSCGOG00000009932) #23	UBL5 (ENSCGOG00000009925) #22	VAV1 (ENSCGOG00000006018)	ENSCGOG00000005950	TRIP10 (ENSCGOG00000005926)	ENSCGOG00000005793	ENSCGOG00000005785	olfm2b (ENSCGOG00000005782) #24	ENSCGOG00000005777	ENSCGOG00000005774	rdh8b (ENSCGOG00000005719) ##26	ENSCGOG00000005711	PLK1 (ENSCGOG00000005526)	rasd3 (ENSCGOG00000005520)	ENSCGOG00000005443	ENSCGOG00000005435	ENSCGOG00000005431
Eupecaria_C	ANCESTRAL SPECIES	14	ENSGT00390000002886.a.a.a	ENSGT00940000156222.a.b	ENSGT00940000155335.s.a	ENSGT00390000009298	ENSGT00390000013127.b	ENSGT00390000010052.b	ENSGT00400000022459	ENSGT00940000153974.A	ENSGT00390000015109	ENSGT00950000182960.a.a.b.e.b	ENSGT01100000263598	ENSGT00530000063725.p.e.b	ENSGT00530000063725.p.e.a	ENSGT00530000063725.p.f	ENSGT00640000091578 #23	ENSGT00390000001945 #22	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a.b	ENSGT00940000154615.i.a.b	ENSGT01060000248589.A.d	ENSGT00940000159148.b #24	ENSGT00940000162394 #25	ENSGT00940000154535.B	ENSGT00940000155412.a.a.b ##26	ENSGT00390000014423	ENSGT00940000157752	ENSGT00940000163566.a.a	ENSGT00950000183157.a.a.b.d	ENSGT00940000163679	ENSGT00950000183060.a.a.d.a
Gilthead seabream	MODERN SPECIES		cyp3a65 (ENSSAUG00010003022)	ENSSAUG00010002979	ENSSAUG00010002933	MYO15A (ENSSAUG00010002828)	alkbh5 (ENSSAUG00010002796)	mief2 (ENSSAUG00010005104)	smcr8b (ENSSAUG00010005103)	PTCD1 (ENSSAUG00010005102)	fbxl18 (ENSSAUG00010005101)	ENSSAUG00010005095	ENSSAUG00010005089	ENSSAUG00010005086	ENSSAUG00010005085	ENSSAUG00010005083	pin1 (ENSSAUG00010005079) #23	UBL5 (ENSSAUG00010005077) #22	VAV1 (ENSSAUG00010003790)	ENSSAUG00010003744	TRIP10 (ENSSAUG00010003713)	MFAP4 (ENSSAUG00010003700)	ENSSAUG00010003690	OLFM2 (ENSSAUG00010003679) #24	ENSSAUG00010003674	ENSSAUG00010002439 #25	rdh8b (ENSSAUG00010002383) ##26	ENSSAUG00010002382	PLK1 (ENSSAUG00010002357)	rasd3 (ENSSAUG00010002339)	FSCN1 (ENSSAUG00010002335)	ENSSAUG00010002327	ENSSAUG00010002321
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	13	ENSGT00390000002886.a.a.a	ENSGT00940000156222.a.b	ENSGT00940000155335.s.a	ENSGT00390000009298	ENSGT00390000013127.b	ENSGT00390000010052.b	ENSGT00400000022459	ENSGT00940000153974.A	ENSGT00390000015109	ENSGT00950000182960.a.a.b.e.b	ENSGT01100000263598	ENSGT00530000063725.p.e.b	ENSGT00530000063725.p.e.a	ENSGT00530000063725.p.f	ENSGT00640000091578 #23	ENSGT00390000001945 #22	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a.b	ENSGT00940000154615.i.a.b	ENSGT01060000248589.A.d	ENSGT00940000159148.b #24	ENSGT00940000154535.B	ENSGT00940000155412.a.a.b ##26	ENSGT00390000014423	ENSGT00940000157752	ENSGT00940000163566.a.a	ENSGT00950000183157.a.a.b.d	ENSGT00940000163679	ENSGT00950000183060.a.a.d.a	ENSGT01070000253744.a.a.a.b.a.a
Large yellow croaker	MODERN SPECIES	481	MMD2 (ENSLCRG00005004033)	arpc1b (ENSLCRG00005004024)	ENSLCRG00005004023	abcg2b (ENSLCRG00005003006)	hapstr1b (ENSLCRG00005002980)	ENSLCRG00005002595	alkbh5 (ENSLCRG00005002503)	mief2 (ENSLCRG00005002499)	smcr8b (ENSLCRG00005002493)	zgc:112980 (ENSLCRG00005002485)	PTCD1 (ENSLCRG00005002470)	fbxl18 (ENSLCRG00005002447)	ENSLCRG00005002431	ENSLCRG00005002419	pin1 (ENSLCRG00005002404) #23	UBL5 (ENSLCRG00005004620) #22	VAV1 (ENSLCRG00005003958)	ENSLCRG00005003950	TRIP10 (ENSLCRG00005003947)	MFAP4 (ENSLCRG00005003942)	ENSLCRG00005003941	olfm2b (ENSLCRG00005003938) #24	col5a3b (ENSLCRG00005003303)	rdh8b (ENSLCRG00005003263) ##26	ENSLCRG00005003259	PLK1 (ENSLCRG00005003102)	rasd3 (ENSLCRG00005003095)	ENSLCRG00005003092	ENSLCRG00005003085	ttyh3b (ENSLCRG00005003076)	ENSLCRG00005003044
European seabass	MODERN SPECIES	20	ENSDLAG00005033020	ENSDLAG00005017302	ENSDLAG00005032865	alkbh5 (ENSDLAG00005018238)	mief2 (ENSDLAG00005018251)	smcr8b (ENSDLAG00005018266)	zgc:112980 (ENSDLAG00005018308)	ENSDLAG00005018351	ENSDLAG00005018358	ENSDLAG00005018387	ENSDLAG00005005392	ENSDLAG00005005172	ENSDLAG00005018416	ENSDLAG00005017457	ENSDLAG00005018433 #23	ENSDLAG00005018446 #22	VAV1 (ENSDLAG00005018480)	ENSDLAG00005019634	TRIP10 (ENSDLAG00005019668)	ENSDLAG00005003231	ENSDLAG00005028231	ENSDLAG00005027198	olfm2b (ENSDLAG00005020774) #24	ENSDLAG00005020790	rdh8b (ENSDLAG00005021516) ##26	ENSDLAG00005021518	ENSDLAG00005021531	ENSDLAG00005021662	ENSDLAG00005021665	ENSDLAG00005032894	ENSDLAG00005021673
Protacanthopterygii	ANCESTRAL SPECIES	127											ENSGT00940000163679	ENSGT00950000183060.a.a.d.a	ENSGT01070000253744.a.a.a.b.a.a	ENSGT00530000063725.p	ENSGT00640000091578 #23	ENSGT00390000001945 #22	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a.b	ENSGT00940000154615.i.a.b	ENSGT00940000159148.b #24	ENSGT01000000214708.a.b	ENSGT00940000160446	ENSGT00940000163377.a.b.a	ENSGT00950000182969.C	ENSGT00950000182975.a.b.a.b	ENSGT01100000263529.a.a.a.a.a.a.b	ENSGT01050000244941.B.c.b.a	ENSGT00940000162790.a.u.a	ENSGT00530000063777.a.a.a	ENSGT01100000263541.a.a.a.b.b.b.a.a
Salmoninae	ANCESTRAL SPECIES	567						ENSGT00940000161420.g.a	ENSGT00940000160222.b	ENSGT00940000164305.c.a	ENSGT00940000161391.b	ENSGT00390000001316	ENSGT00940000163679	ENSGT00950000183060.a.a.d.a.d	ENSGT00940000158717.m.a	ENSGT00530000063725.p.c.a	ENSGT00640000091578 #23	ENSGT00390000001945 #22	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a.b	ENSGT00940000154615.i.a.b.g	ENSGT00940000159148.b #24	ENSGT00940000154535.B.a.b
Salmoninae_a	DUPLICATION
Salmoninae_a	DUPLICATION
Salmoninae_a	ANCESTRAL SPECIES	597															ENSGT00640000091578.c.b #23	ENSGT00390000001945.tc.a #22
Salmo	ANCESTRAL SPECIES	204														ENSGT00530000063725.p.c.a.a	ENSGT00640000091578.c.b #23	ENSGT00390000001945.tc.a #22	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a.b	ENSGT00940000154615.i.a.b.g	ENSGT00940000159148.b #24	ENSGT00940000154535.B.a.a	ENSGT00940000155412.a.a.b.e.a.a ##26	ENSGT00940000156207.a.a.b.a.a.a.b.a.a.b.a	ENSGT00940000162179.e.b.a.b.g.a.a.a.a.a	ENSGT00940000162179.e.b.a.b.g.a.a.a.b.a	ENSGT00940000163461.a.a.a.b.c.b.b.b.a.b.a.a.b.b.a.b.a
Atlantic salmon	MODERN SPECIES	3	ENSSSAG00000112137	ENSSSAG00000083578	ENSSSAG00000099796	ENSSSAG00000000283	ENSSSAG00000106634	ENSSSAG00000105367	ENSSSAG00000121953	ENSSSAG00000121922	ENSSSAG00000058964	ENSSSAG00000113767	ENSSSAG00000088546	ENSSSAG00000012023	ENSSSAG00000086285	ENSSSAG00000121868	ENSSSAG00000093239 #23	ubl5 (ENSSSAG00000005791) #22	VAV1 (ENSSSAG00000116279)	ENSSSAG00000118490	TRIP10 (ENSSSAG00000059860)	ENSSSAG00000083855	ENSSSAG00000102701	olfm2b (ENSSSAG00000083473) #24	ENSSSAG00000086944	ENSSSAG00000010463	rdh8b (ENSSSAG00000089149) ##26	ENSSSAG00000098115	ENSSSAG00000103264	ENSSSAG00000093463	ENSSSAG00000092457	ENSSSAG00000089665	ENSSSAG00000004591
River trout	MODERN SPECIES	31	ENSSTUG00000021625	ENSSTUG00000021608	cyp3a65 (ENSSTUG00000021362)	cyp3a65 (ENSSTUG00000020583)	foxk1 (ENSSTUG00000020555)	mad1l1 (ENSSTUG00000020539)	ENSSTUG00000020533	ENSSTUG00000020525	ENSSTUG00000020499	ENSSTUG00000020491	TTYH3 (ENSSTUG00000020485)	ENSSTUG00000020479	ENSSTUG00000020468	ENSSTUG00000020460	pin1 (ENSSTUG00000020442) #23	UBL5 (ENSSTUG00000020430) #22	VAV1 (ENSSTUG00000020163)	ENSSTUG00000020087	TRIP10 (ENSSTUG00000020077)	ENSSTUG00000020072	OLFM2 (ENSSTUG00000020056) #24	rdh8b (ENSSTUG00000019986) ##26	ENSSTUG00000019977	ENSSTUG00000019968	ENSSTUG00000019958	ENSSTUG00000044295	ENSSTUG00000044261	ENSSTUG00000044259	ENSSTUG00000044250	ENSSTUG00000044240	ENSSTUG00000036781
Oncorhynchus	ANCESTRAL SPECIES																	ENSGT00390000001945.tc.a #22
Oncorhynchus_a	ANCESTRAL SPECIES																	ENSGT00390000001945.tc.a #22
Chinook salmon	MODERN SPECIES	1621															ENSOTSG00005032274	UBL5 (ENSOTSG00005032276) #22
Salmoninae_a	ANCESTRAL SPECIES	394														ENSGT00530000063725.p.c.a.b	ENSGT00640000091578.c.a #23	ENSGT00390000001945.tc.b #22
Oncorhynchus	ANCESTRAL SPECIES																	ENSGT00390000001945.tc.b #22
Oncorhynchus_a	ANCESTRAL SPECIES	643															ENSGT00640000091578.d #23	ENSGT00390000001945.tc.b #22
Coho salmon	MODERN SPECIES	30	ENSOKIG00005037155	ENSOKIG00005037140	ENSOKIG00005037123	ENSOKIG00005037117	ENSOKIG00005037108	ENSOKIG00005037082	ENSOKIG00005037059	ENSOKIG00005037029	ENSOKIG00005036986	ENSOKIG00005036969	ENSOKIG00005035951	ENSOKIG00005035872	ENSOKIG00005035859	ENSOKIG00005035849	PIN1 (ENSOKIG00005035836) #23	UBL5 (ENSOKIG00005035801) #22	ENSOKIG00005035793	ENSOKIG00005035774	ENSOKIG00005035736	TRIP10 (ENSOKIG00005035680)	MFAP4 (ENSOKIG00005035656)	ENSOKIG00005035650	ENSOKIG00005035637 ##26	ENSOKIG00005035634	ENSOKIG00005035622	ENSOKIG00005035596	ENSOKIG00005035584	ENSOKIG00005035580	ENSOKIG00005035574	ENSOKIG00005035559	ENSOKIG00005034860
Salmo	ANCESTRAL SPECIES	407														ENSGT00530000063725.p.c.a.b	ENSGT00640000091578.c.a #23	ENSGT00390000001945.tc.b #22
River trout	MODERN SPECIES	5	ENSSTUG00000006380	ENSSTUG00000006384	nanos3 (ENSSTUG00000006390)	ENSSTUG00000006402	CARM1 (ENSSTUG00000006427)	ENSSTUG00000007034	ENSSTUG00000007039	ENSSTUG00000007052	ENSSTUG00000007060	ENSSTUG00000007063	ENSSTUG00000007074	ENSSTUG00000007086	ENSSTUG00000001777	ENSSTUG00000002017	pin1 (ENSSTUG00000002196) #23	UBL5 (ENSSTUG00000002242) #22	ENSSTUG00000002245	ENSSTUG00000002251	ENSSTUG00000002260	ENSSTUG00000002275	ENSSTUG00000002333	ttyh3b (ENSSTUG00000002418)	ENSSTUG00000002565	ENSSTUG00000002577	mad1l1 (ENSSTUG00000002601)	ENSSTUG00000002628	ENSSTUG00000002631	ENSSTUG00000002638	ENSSTUG00000002641	parn (ENSSTUG00000002721)	ENSSTUG00000002860
Salmoninae_a	ANCESTRAL SPECIES	33	ENSGT01100000263520.a.b.b.a.a.b	ENSGT01100000263520.a.b.a.a.a.a.a.b	ENSGT00940000161391.b	ENSGT00390000001316	ENSGT00940000162179.e.b.a.b.g.a.a.b.a.a.b	ENSGT00940000162179.e.b.a.b.g.a.a.b.a.a.a	ENSGT00940000163679	ENSGT00950000183060.a.a.d.a.d	ENSGT00940000158717.m.a	ENSGT00950000183060.a.a.c	ENSGT00940000158717.n.d	ENSGT01070000253744.a.a.a.b.a.a	ENSGT00960000186686.a	ENSGT00530000063725.p.c.a.a	ENSGT00640000091578.d #23	ENSGT00390000001945.uc #22	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a.b	ENSGT00940000154615.i.a.b.g	ENSGT00940000159148.b #24	ENSGT01000000214708.a.b	ENSGT00940000165175.a.b.a	ENSGT00940000160542	ENSGT00530000063777.a.a.a.l	ENSGT00940000162790.a.u.a.c	ENSGT01050000244941.B.c.b.a.h	ENSGT01100000263541.a.a.a.b.b.b.a.a.b	ENSGT00530000063777.a.a.a.k.a	ENSGT00940000162790.a.u.a.d	ENSGT01050000244941.B.c.b.a.g
Oncorhynchus	DUPLICATION
Oncorhynchus	ANCESTRAL SPECIES	68															ENSGT00640000091578.c.b #23	ENSGT00390000001945.uc.a #22	ENSGT00940000159125	ENSGT00940000154130.a.a.a.k	ENSGT00950000183047.c.a.b	ENSGT00940000154615.i.a.b.h.a	ENSGT00940000159148.b #24	ENSGT01000000214708.a.b	ENSGT00940000165175.a.a.b	ENSGT00940000160542	ENSGT00530000063777.a.a.a.k.b	ENSGT01100000263541.a.a.a.b.b.b.a.a.b	ENSGT00530000063777.a.a.a.k.a	ENSGT00940000162790.a.u.a.d	ENSGT00940000162790.a.u.a.c	ENSGT01050000244941.B.c.b.a.g	ENSGT01100000263529.a.a.a.a.a.a.b
Rainbow trout	MODERN SPECIES	8	ENSOMYG00000065589	ENSOMYG00000048462	ENSOMYG00000048110	ENSOMYG00000075319	ENSOMYG00000027704	ENSOMYG00000033926	ENSOMYG00000061654	ENSOMYG00000063285	ENSOMYG00000049562	ENSOMYG00000059954	ENSOMYG00000068131	ENSOMYG00000077308	ENSOMYG00000067970	ENSOMYG00000024970	ENSOMYG00000053189 #23	ENSOMYG00000015044 #22	VAV1 (ENSOMYG00000072256)	SH2D3A (ENSOMYG00000052904)	ENSOMYG00000065003	TRIP10 (ENSOMYG00000057041)
Oncorhynchus_a	ANCESTRAL SPECIES	319															ENSGT00640000091578.c.a #23	ENSGT00390000001945.uc.a #22	ENSGT00940000159125	ENSGT00940000154130.a.a.a.k	ENSGT00950000183047.c.a.b	ENSGT00940000154615.i.a.b.h.a
Coho salmon	MODERN SPECIES	353													ENSOKIG00005036860	ENSOKIG00005036852	pin1 (ENSOKIG00005036838) #23	ENSOKIG00005036814 #22	VAV1 (ENSOKIG00005036726)
Oncorhynchus	ANCESTRAL SPECIES	490															ENSGT00640000091578.d #23	ENSGT00390000001945.uc.b #22
Rainbow trout	MODERN SPECIES	8	ENSOMYG00000061003	ENSOMYG00000015491	ENSOMYG00000015479	ENSOMYG00000077515	ENSOMYG00000054019	ENSOMYG00000052710	mad1l1 (ENSOMYG00000072324)	ENSOMYG00000033806	ENSOMYG00000066607	ENSOMYG00000064173	ENSOMYG00000070955	ENSOMYG00000066783	ENSOMYG00000023639	ENSOMYG00000033898	ENSOMYG00000067705 #23	ENSOMYG00000051177 #22	VAV1 (ENSOMYG00000058436)	ENSOMYG00000064599	TRIP10 (ENSOMYG00000064334)	ENSOMYG00000074604	ENSOMYG00000051780 #24	ENSOMYG00000053307	ENSOMYG00000061181 ##26	ENSOMYG00000066211	ENSOMYG00000033914	ENSOMYG00000065181	ENSOMYG00000069849	ENSOMYG00000070907	ENSOMYG00000066505	ENSOMYG00000003311	ENSOMYG00000074181
Otomorpha	ANCESTRAL SPECIES	350															ENSGT00640000091578 #23	ENSGT00390000001945 #22	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a.b	ENSGT00940000154615.i.a.b	ENSGT00940000159148.b #24	ENSGT01000000214708.a.b	ENSGT00940000154615.i.b	ENSGT00940000160446	ENSGT00940000163377.a.b.a	ENSGT00950000182969.C	ENSGT00950000182975.a.b.a.b	ENSGT01100000263529.a.a.a.a.a.a.b	ENSGT01050000244941.B.c.b.a	ENSGT00940000162790.a.u.a	ENSGT00530000063777.a.a.a
Clupeiformes	ANCESTRAL SPECIES	265															ENSGT00640000091578 #23	ENSGT00390000001945 #22	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a.b	ENSGT00940000154615.i.a.b.i.a	ENSGT00940000159148.b #24	ENSGT00940000154535.B	ENSGT00940000155412.a.a.b ##26	ENSGT00940000154615.i.b.c.a	ENSGT00940000160446	ENSGT00940000163377.a.b.a	ENSGT00950000182975.a.b.a.b.d	ENSGT01100000263529.a.a.a.a.a.a.b	ENSGT01050000244941.B.c.b.a	ENSGT00950000182969.C	ENSGT00950000182975.a.b.a.b.c
Atlantic herring	MODERN SPECIES	16						ENSCHAG00000004946	ENSCHAG00000004938	ENSCHAG00000004878	ENSCHAG00000004639	ENSCHAG00000004512	thumpd1 (ENSCHAG00000004500)	ENSCHAG00000004393	ENSCHAG00000004365	ENSCHAG00000004343	pin1 (ENSCHAG00000004216) #23	UBL5 (ENSCHAG00000004199) #22	ENSCHAG00000004143	ENSCHAG00000004108	ENSCHAG00000004094	ENSCHAG00000004018	TRIP10 (ENSCHAG00000003844)	MFAP4 (ENSCHAG00000003825)	MFAP4 (ENSCHAG00000003617)	ENSCHAG00000003476	MFAP4 (ENSCHAG00000003110)	OLFM2 (ENSCHAG00000002754) #24	ENSCHAG00000002688	rdh8b (ENSCHAG00000002637) ##26	ENSCHAG00000002590	MFAP4 (ENSCHAG00000022729)	MFAP4 (ENSCHAG00000022716)
Denticle herring	MODERN SPECIES	13	ENSDCDG00000029686	ENSDCDG00000029689	PLA2G10 (ENSDCDG00000029697)	BFAR (ENSDCDG00000029701)	parn (ENSDCDG00000029702)	REXO5 (ENSDCDG00000029708)	ENSDCDG00000029714	thumpd1 (ENSDCDG00000029720)	AXIN1 (ENSDCDG00000029731)	GTF3C1 (ENSDCDG00000013884)	SEC14L5 (ENSDCDG00000014080)	ENSDCDG00000014407	cyp3a65 (ENSDCDG00000014525)	gpank1 (ENSDCDG00000018164)	pin1 (ENSDCDG00000018169) #23	UBL5 (ENSDCDG00000018172) #22	VAV1 (ENSDCDG00000018208)	ENSDCDG00000019626	TRIP10 (ENSDCDG00000019639)	MFAP4 (ENSDCDG00000019665)	MFAP4 (ENSDCDG00000019749)	olfm2b (ENSDCDG00000019819) #24	ENSDCDG00000019822	rdh8b (ENSDCDG00000019826) ##26	MFAP4 (ENSDCDG00000019827)	ENSDCDG00000019829	GPR108 (ENSDCDG00000019868)	ENSDCDG00000020541	ENSDCDG00000020543	ENSDCDG00000020577	ENSDCDG00000021004
Otophysi	ANCESTRAL SPECIES	28	ENSGT00390000005386.r	ENSGT00390000016020	ENSGT00950000182957.b.a.b.a.a	ENSGT00940000154535.C	ENSGT00940000159148.b #24	ENSGT00940000160542	ENSGT00530000063777.a.a.a	ENSGT00940000162790.a.u.a	ENSGT01050000244941.B.c.a	ENSGT00950000182975.a.b.a.b.a	ENSGT00950000182969.C	ENSGT00940000163377.a.b.a	ENSGT00940000160446	ENSGT00940000154615.i.b	ENSGT00640000091578 #23	ENSGT00390000001945 #22	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a.b	ENSGT00940000154615.i.a.a.b	ENSGT00940000163551	ENSGT00940000155764.A.b.b	ENSGT00940000158445.e	ENSGT00940000176155.h	ENSGT00970000193390.c.b.a.a.b	ENSGT01030000234558.D.b.g.a	ENSGT00940000161246	ENSGT01060000249475	ENSGT01100000263538.A.a.b	ENSGT00940000164791.a.b	ENSGT00940000156783.k
Cyprinoidei	ANCESTRAL SPECIES	30	ENSGT00390000016020	ENSGT00940000155412.a.a.b ##26	ENSGT00940000154535.B	ENSGT00950000183249	ENSGT00940000159148.b #24	ENSGT00940000160542	ENSGT00530000063777.a.a.a	ENSGT01050000244941.B.c.a	ENSGT00950000182975.a.b.a.b.a	ENSGT00950000182969.C	ENSGT00940000163377.a.b.a	ENSGT00940000160446	ENSGT00940000154615.i.a.a.b.a.a.b	ENSGT00940000163551	ENSGT00640000091578 #23	ENSGT00390000001945 #22	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a.b	ENSGT00940000155764.A.b.b	ENSGT00940000158445.e	ENSGT01060000248544.a.a.b.a.a.f.c	ENSGT00940000167471	ENSGT00940000162428.m.f	ENSGT00970000193390.c.b.a.a.b.c	ENSGT01030000234558.D.b.g.a	ENSGT00940000161246	ENSGT01060000249475	ENSGT00940000154395.a.a.b.b.g.b	ENSGT01070000253760.b.b.b.c.b.c.b	ENSGT00940000164791.a.b
Cyprininae	ANCESTRAL SPECIES	723														ENSGT00940000154615.i.a.a.b.a.a.b.b.b	ENSGT00640000091578.a #23	ENSGT00390000001945 #22	ENSGT00940000159125.u.a.b	ENSGT00940000154130.a.a.a.g	ENSGT00950000183047.c.a.b.i	ENSGT00940000162179.e.b.a.a.a.a.c.b	ENSGT00940000155764.A.b.b	ENSGT00940000158445.e.b	ENSGT01060000248544.a.a.b.a.a.f.c.a	ENSGT00940000167471
Cyprininae_a	ANCESTRAL SPECIES	712														ENSGT00940000154615.i.a.a.b.a.a.b.b.b	ENSGT00640000091578.a #23	ENSGT00390000001945 #22	ENSGT00940000159125.u.a.a	ENSGT00940000154130.a.a.a.h	ENSGT00950000183047.c.a.b.j
Golden-line barbel	MODERN SPECIES	732			ENSSGRG00000035661	akap8l (ENSSGRG00000035659)	lpar2b (ENSSGRG00000035658)	ENSSGRG00000035656	GPR108 (ENSSGRG00000035538)	ENSSGRG00000035532	MFAP4 (ENSSGRG00000035424)	ENSSGRG00000035344	ENSSGRG00000035268	MFAP4 (ENSSGRG00000035263)	MFAP4 (ENSSGRG00000035261)	MFAP4 (ENSSGRG00000035260)	pin1 (ENSSGRG00000035259) #23	UBL5 (ENSSGRG00000035255) #22	VAV1 (ENSSGRG00000034982)	ENSSGRG00000034977	TRIP10 (ENSSGRG00000034976)	ENSSGRG00000034975	MFAP4 (ENSSGRG00000034974)	ENSSGRG00000034973	ENSSGRG00000034972	tmed1b (ENSSGRG00000034971)	ENSSGRG00000034970	ENSSGRG00000034386	ENSSGRG00000034376	ENSSGRG00000034375	ENSSGRG00000034374	ENSSGRG00000034372	ENSSGRG00000034370
Common carp reference	DUPLICATION
Common carp reference	MODERN SPECIES	27	rdh8b (ENSCCRG00000053718) ##26	rdh8b (ENSCCRG00000070590) ##26	col5a3b (ENSCCRG00000062582)	olfm2b (ENSCCRG00000046602) #24	akap8l (ENSCCRG00000046593)	lpar2b (ENSCCRG00000056302)	ENSCCRG00000080599	ENSCCRG00000046530	ENSCCRG00000075758	ENSCCRG00000056994	ENSCCRG00000055374	ENSCCRG00000014898	ENSCCRG00000023220	ENSCCRG00000082559	pin1 (ENSCCRG00000023080) #23	ENSCCRG00000055097 #22	VAV1 (ENSCCRG00000080919)	ENSCCRG00000005727	TRIP10 (ENSCCRG00000005736)	ENSCCRG00000074469	ENSCCRG00000064713	ENSCCRG00000057886	ENSCCRG00000059994	ENSCCRG00000034945	ENSCCRG00000065895	ENSCCRG00000064704	ENSCCRG00000055205	ENSCCRG00000075964	ENSCCRG00000005925	ENSCCRG00000078868	ENSCCRG00000081023
Common carp reference	MODERN SPECIES	22	ENSCCRG00000072939	ENSCCRG00000082118 ##26	ENSCCRG00000046581	akap8l (ENSCCRG00000060911)	lpar2b (ENSCCRG00000046566)	ENSCCRG00000033008	ENSCCRG00000077566	ENSCCRG00000029039	ENSCCRG00000057711	ENSCCRG00000033015	ENSCCRG00000043373	ENSCCRG00000044454	ENSCCRG00000044030	ENSCCRG00000028629	pin1 (ENSCCRG00000052855) #23	ENSCCRG00000017166 #22	VAV1 (ENSCCRG00000064696)	ENSCCRG00000026838	TRIP10 (ENSCCRG00000053323)	ENSCCRG00000059882	ENSCCRG00000068408	ENSCCRG00000057476	ENSCCRG00000069516	ENSCCRG00000074530	ENSCCRG00000007554	ENSCCRG00000056070	ENSCCRG00000006983	ENSCCRG00000018413	ENSCCRG00000073403	ENSCCRG00000078855	tmed1b (ENSCCRG00000030782)
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	3298																UBL5 (ENSCARG00000046151) #22	VAV1 (ENSCARG00000044938)	ENSCARG00000044855
Goldfish	MODERN SPECIES	1512																ENSCARG00000035134 #22	VAV1 (ENSCARG00000035142)
Characiphysae	ANCESTRAL SPECIES	32	ENSGT00940000153167.A.b	ENSGT00940000154535.C	ENSGT00940000159148.b #24	ENSGT00940000160542	ENSGT00530000063777.a.a.a.s.a	ENSGT01050000244941.B.c.a.c	ENSGT01100000263529.a.a.a.a.a.a.b	ENSGT00950000182975.a.b.a.b.b	ENSGT00950000182975.a.b.a.b.a	ENSGT00940000163377.a.b.a	ENSGT00940000160446	ENSGT00940000154615.i.b.b	ENSGT00940000163551	ENSGT00940000154615.i.a.a.b.c	ENSGT00640000091578 #23	ENSGT00390000001945 #22	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a.b	ENSGT00940000155764.A.b.b	ENSGT00940000158445.e	ENSGT00940000176155.h	ENSGT00940000165798	ENSGT00940000159323.b	ENSGT00970000193390.c.b.a.a.a	ENSGT00970000193390.c.b.a.a.b.b	ENSGT00970000193390.c.b.a.a.b.a	ENSGT01030000234558.D.b.g.a	ENSGT00940000161246	ENSGT01060000249475	ENSGT00390000001390.a.a.b
Channel catfish	MODERN SPECIES	18	ENSIPUG00000012024	ENSIPUG00000011990	ENSIPUG00000011961	ENSIPUG00000011944	ENSIPUG00000011604	ENSIPUG00000011533	MFAP4 (ENSIPUG00000011520)	MFAP4 (ENSIPUG00000011500)	MFAP4 (ENSIPUG00000011461)	ENSIPUG00000011440	ENSIPUG00000011430	MFAP4 (ENSIPUG00000011412)	ENSIPUG00000011388	MFAP4 (ENSIPUG00000011375)	pin1 (ENSIPUG00000011373) #23	UBL5 (ENSIPUG00000011363) #22	vav1 (ENSIPUG00000011261)	ENSIPUG00000011212	ENSIPUG00000011168	ENSIPUG00000011122	ENSIPUG00000011087	tmed1 (ENSIPUG00000011069)	ENSIPUG00000011053	ENSIPUG00000011044	ADGRL1 (ENSIPUG00000010999)	ENSIPUG00000010986	ENSIPUG00000010968	ENSIPUG00000010941	ENSIPUG00000010932	ENSIPUG00000010921	trim35-1 (ENSIPUG00000010911)
Characiphysae_b	ANCESTRAL SPECIES	156	ENSGT00950000183249	ENSGT00940000159148.b #24	ENSGT00940000160542	ENSGT00530000063777.a.a.a.s.b	ENSGT00940000162790.a.u.a	ENSGT01050000244941.B.c.a.c	ENSGT00950000182975.a.b.a.b.b	ENSGT00950000182975.a.b.a.b.a	ENSGT00950000182969.C	ENSGT00940000163377.a.b.a	ENSGT00940000160446	ENSGT00940000154615.i.b.b	ENSGT00940000163551	ENSGT00940000154615.i.a.a.b.c	ENSGT00640000091578 #23	ENSGT00390000001945 #22	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a.b	ENSGT00940000155764.A.b.b	ENSGT00940000158445.e	ENSGT00940000176155.h	ENSGT00940000165798	ENSGT00940000159323.b.a	ENSGT00970000193390.c.b.a.a.a.a.a.a	ENSGT00970000193390.c.b.a.a.b.b	ENSGT00970000193390.c.b.a.a.b.a	ENSGT01030000234558.D.b.g.a	ENSGT00940000161246	ENSGT01060000249475
Electric eel	MODERN SPECIES	748								ENSEEEG00000014057	ENSEEEG00000014059	ENSEEEG00000014063	GPR108 (ENSEEEG00000014095)	ENSEEEG00000014103	ENSEEEG00000014246	MFAP4 (ENSEEEG00000014247)	pin1 (ENSEEEG00000014248) #23	UBL5 (ENSEEEG00000014250) #22	VAV1 (ENSEEEG00000014264)	ENSEEEG00000014518
Characoidei	ANCESTRAL SPECIES	54		ENSGT00530000063777.a.a.a.s.b	ENSGT00940000162790.a.u.a	ENSGT01050000244941.B.c.a.c	ENSGT00950000182975.a.b.a.b.b	ENSGT00950000182975.a.b.a.b.a	ENSGT00950000182969.C	ENSGT00940000163377.a.b.a	ENSGT00940000160446	ENSGT00940000154615.i.b.b	ENSGT00940000154615.i.a.a.a	ENSGT00940000154615.i.a.a.b.c.f	ENSGT00940000154615.i.a.a.b.c.e	ENSGT00940000154615.i.b.a	ENSGT00640000091578 #23	ENSGT00390000001945 #22	ENSGT00940000159125	ENSGT00940000154130.a.a.a	ENSGT00950000183047.c.a.b	ENSGT00940000155764.A.b.b	ENSGT00940000158445.e	ENSGT00940000165798	ENSGT00940000159323.b.a	ENSGT00970000193390.c.b.a.a.a.a.a.a	ENSGT01030000234583.a.a.c.b.a.b.c.a.a	ENSGT01100000263535.b.b	ENSGT01010000222294.c.b.a.a.a.a	ENSGT01100000263529.a.a.a.a.a.a.a.b.b.a.a.b	ENSGT01100000263541.a.a.a.b.b.a.c.c.b	ENSGT01100000263541.a.a.a.b.b.a.c.c.a	ENSGT01100000263525.a.b.a.b.b.a
Red-bellied piranha	MODERN SPECIES	909												MFAP4 (ENSPNAG00000016948)	MFAP4 (ENSPNAG00000016934)	ENSPNAG00000003453	pin1 (ENSPNAG00000016914) #23	UBL5 (ENSPNAG00000016895) #22	VAV1 (ENSPNAG00000016844)	ENSPNAG00000016705	TRIP10 (ENSPNAG00000016640)
Mexicana tetra	MODERN SPECIES	3	ENSAMXG00000041997	ENSAMXG00000030326	ENSAMXG00000012000	GPR108 (ENSAMXG00000031163)	ENSAMXG00000011994	ENSAMXG00000041310	ENSAMXG00000039937	MFAP4 (ENSAMXG00000011989)	MFAP4 (ENSAMXG00000039543)	ENSAMXG00000030565	MFAP4 (ENSAMXG00000011973)	MFAP4 (ENSAMXG00000037154)	ENSAMXG00000039021	pin1 (ENSAMXG00000011958) #23	ENSAMXG00000036377	UBL5 (ENSAMXG00000029668) #22	VAV1 (ENSAMXG00000035839)	SH2D3A (ENSAMXG00000004200)	TRIP10 (ENSAMXG00000043660)	ENSAMXG00000034985	ENSAMXG00000042238	ENSAMXG00000042775	ENSAMXG00000036064	ENSAMXG00000033935	ENSAMXG00000042219	ENSAMXG00000015784	tmed1b (ENSAMXG00000035598)	ENSAMXG00000034319	ENSAMXG00000015742	ENSAMXG00000015727	ENSAMXG00000040316
Cyclostomata	ANCESTRAL SPECIES	909															ENSGT00640000091578 #23	ENSGT00390000001945 #22
Hagfish	MODERN SPECIES	705							neu1 (ENSEBUG00000002708)	ENSEBUG00000008147	ENSEBUG00000009447	ENSEBUG00000010958	ENSEBUG00000008318	ENSEBUG00000011651	OLFM1 (ENSEBUG00000006686)	ENSEBUG00000000505	pin1 (ENSEBUG00000006178) #23	UBL5 (ENSEBUG00000016653) #22
Ciona	ANCESTRAL SPECIES																	ENSGT00390000001945 #22
Ciona savignyi	DUPLICATION
Ciona savignyi	MODERN SPECIES	252													ENSCSAVG00000001805	ENSCSAVG00000001795	ENSCSAVG00000001780	ENSCSAVG00000001774 #22	ENSCSAVG00000001770	ENSCSAVG00000001723	ENSCSAVG00000001720	ENSCSAVG00000001717	ENSCSAVG00000001714	ENSCSAVG00000001711
Ciona savignyi	MODERN SPECIES	319															ENSCSAVG00000003399	ENSCSAVG00000003405 #22