Sarcopterygii	ANCESTRAL SPECIES	1182																ENSGT00390000001945 #22	ENSGT00960000189235
Tetrapoda	ANCESTRAL SPECIES	612																ENSGT00390000001945 #22	ENSGT00960000189235
Amniota	ANCESTRAL SPECIES	31	ENSGT01030000234558.D.b	ENSGT00940000154149.b.b	ENSGT00550000075110	ENSGT00940000159323	ENSGT00940000161246	ENSGT00950000183110.a	ENSGT01050000244941.B.c	ENSGT00940000162643	ENSGT00940000160542	ENSGT00550000075064	ENSGT00390000007919	ENSGT00940000165858	ENSGT00940000164508	ENSGT00390000003354 #20	ENSGT00990000205479	ENSGT00390000001945 #22	ENSGT00640000091578 #24	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00940000154535.C	ENSGT00940000155412.b #27	ENSGT00390000005065 #29	ENSGT00940000160969 #30	ENSGT00530000064158 #31	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT00940000172524	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000159005
Mammalia	ANCESTRAL SPECIES	42			ENSGT01030000234558.D.b	ENSGT00940000154149.b.b	ENSGT00550000075110	ENSGT00940000159323	ENSGT00940000161246	ENSGT00940000160542	ENSGT00940000162643	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064	ENSGT00390000007919	ENSGT00390000003354 #20	ENSGT00990000205479	ENSGT00390000001945 #22	ENSGT00640000091578 #24	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00940000154535.C	ENSGT00940000155412.b #27	ENSGT00390000005065 #29	ENSGT00940000160969 #30	ENSGT00530000064158 #31	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT00940000172524	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000159005
Theria	ANCESTRAL SPECIES	29			ENSGT01030000234558.D.b	ENSGT00940000154149.b.b	ENSGT00550000075110	ENSGT00940000159323	ENSGT00940000161246	ENSGT00940000160542	ENSGT00940000162643	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064	ENSGT00390000007919	ENSGT00390000003354 #20	ENSGT00990000205479	ENSGT00390000001945 #22	ENSGT00640000091578 #24	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00940000155412.b #27	ENSGT00940000164135 #28	ENSGT00390000005065 #29	ENSGT00940000160969 #30	ENSGT00530000064158 #31	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT00940000172524	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162431
Eutheria	ANCESTRAL SPECIES	27	ENSGT00390000016884	ENSGT00550000075140	ENSGT00950000182975.a.b	ENSGT00940000159130	ENSGT00950000183036.b	ENSGT00940000162948	ENSGT00390000014215	ENSGT00390000000427	ENSGT00940000157375	ENSGT00940000154146.b.b.b	ENSGT00940000155404	ENSGT00940000162532	ENSGT00940000162241	ENSGT00390000003354 #20	ENSGT00990000205479	ENSGT00390000001945 #22	ENSGT00640000091578 #24	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00940000155412.b #27	ENSGT00940000164135 #28	ENSGT00390000005065 #29	ENSGT00940000160969 #30	ENSGT00530000064158 #31	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT00940000172524	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311
Boreoeutheria	ANCESTRAL SPECIES	18	ENSGT00940000164306	ENSGT00940000153686 #7	ENSGT00940000162877	ENSGT00940000156425	ENSGT00940000164510	ENSGT00940000163651	ENSGT00940000153277.A #8	ENSGT00940000163210 #9	ENSGT00940000164004 #10	ENSGT00940000163463 #11	ENSGT00940000162380 #12	ENSGT00940000163292 #14	ENSGT00940000163958 #18	ENSGT00390000003354 #20	ENSGT00990000205479	ENSGT00390000001945 #22	ENSGT00640000091578 #24	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00940000155412.b #27	ENSGT00940000164135 #28	ENSGT00390000005065 #29	ENSGT00940000160969 #30	ENSGT00530000064158 #31	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT00940000172524	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311
Euarchontoglires	ANCESTRAL SPECIES	18	ENSGT01090000260018.B.a.b	ENSGT00940000160844.a	ENSGT00950000183005.b.c.a	ENSGT00440000039287	ENSGT00940000163044	ENSGT00940000154131	ENSGT00940000162532	ENSGT00940000154619	ENSGT00940000163146	ENSGT00940000162241	ENSGT00940000164306	ENSGT00940000153686 #7	ENSGT00940000153277.A.b.b.a ##8	ENSGT00940000163958 #18	ENSGT00390000003354 #20	ENSGT00390000001945 #22	ENSGT00640000091578 #24	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00940000155412.b #27	ENSGT00940000164135 #28	ENSGT00390000005065 #29	ENSGT00940000160969 #30	ENSGT00530000064158 #31	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT00940000172524	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311
Primates	ANCESTRAL SPECIES	18	ENSGT00940000163146	ENSGT00940000162241	ENSGT00940000164306	ENSGT00940000156425	ENSGT00940000153686 #7	ENSGT00940000153277.A.a #8	ENSGT00940000163210 #9	ENSGT00940000164004 #10	ENSGT00940000163463 #11	ENSGT00940000162380 #12	ENSGT00940000164683 #13	ENSGT00940000163292 #14	ENSGT00940000163151 #15	ENSGT00940000163958 #18	ENSGT00390000003354 #20	ENSGT00390000001945 #22	ENSGT00640000091578 #24	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00940000155412.b #27	ENSGT00940000164135 #28	ENSGT00390000005065 #29	ENSGT00940000160969 #30	ENSGT00530000064158 #31	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT00940000172524	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311
Haplorrhini	ANCESTRAL SPECIES	14	ENSGT00940000154131	ENSGT00940000154619	ENSGT00940000163146	ENSGT00940000156425	ENSGT00940000153686 #7	ENSGT00940000153277.A.a #8	ENSGT00940000163210 #9	ENSGT00940000164004 #10	ENSGT00940000163463 #11	ENSGT00940000162380 #12	ENSGT00940000164683 #13	ENSGT00940000163292 #14	ENSGT00940000163151 #15	ENSGT00940000163958 #18	ENSGT00390000003354 #20	ENSGT00390000001945 #22	ENSGT00640000091578 #24	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00940000155412.b #27	ENSGT00940000164135 #28	ENSGT00390000005065 #29	ENSGT00940000160969 #30	ENSGT00530000064158 #31	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT00940000172524	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311
Simiiformes	ANCESTRAL SPECIES	13	ENSGT00940000162241	ENSGT00940000164306	ENSGT00940000153686 #7	ENSGT00940000153277.A.a #8	ENSGT00940000156425	ENSGT00940000163210 #9	ENSGT00940000164004 #10	ENSGT00940000163463 #11	ENSGT00940000162380 #12	ENSGT00940000164683 #13	ENSGT00940000163292 #14	ENSGT00940000163151 #15	ENSGT00940000162984 #16	ENSGT00940000163958 #18	ENSGT00390000003354 #20	ENSGT00390000001945 #22	ENSGT00640000091578 #24	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00940000155412.b #27	ENSGT00940000164135 #28	ENSGT00390000005065 #29	ENSGT00940000160969 #30	ENSGT00530000064158 #31	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT00940000172524	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311
Catarrhini	ANCESTRAL SPECIES		ENSGT00940000153686 #7	ENSGT00940000153277.A.a #8	ENSGT00940000156425	ENSGT00940000163210 #9	ENSGT00940000164004 #10	ENSGT00940000163463 #11	ENSGT00940000162380 #12	ENSGT00940000164683 #13	ENSGT00940000163292 #14	ENSGT00940000163151 #15	ENSGT00940000162984.b.a ##16	ENSGT00940000162984.a.a #16	ENSGT00940000162984.a.b ##16	ENSGT00940000163958 #18	ENSGT00390000003354 #20	ENSGT00390000001945 #22	ENSGT00640000091578 #24	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00940000155412.b #27	ENSGT00940000164135 #28	ENSGT00390000005065 #29	ENSGT00940000160969 #30	ENSGT00530000064158 #31	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT00940000172524	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311
Cercopithecidae	ANCESTRAL SPECIES	17	ENSGT00940000153277.A.a #8	ENSGT00940000156425	ENSGT00940000153686 #7	ENSGT00940000163210 #9	ENSGT00940000164004 #10	ENSGT00940000163463 #11	ENSGT00940000162380 #12	ENSGT00940000164683 #13	ENSGT00940000163292 #14	ENSGT00940000163151 #15	ENSGT00940000162984.b.a ##16	ENSGT00940000162984.a.a #16	ENSGT00940000162984.a.b ##16	ENSGT00940000163958 #18	ENSGT00390000003354 #20	ENSGT00390000001945 #22	ENSGT00640000091578 #24	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00940000155412.b #27	ENSGT00940000164135 #28	ENSGT00390000005065 #29	ENSGT00940000160969 #30	ENSGT00530000064158 #31	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT00940000172524	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311
Cercopithecinae	ANCESTRAL SPECIES	1	ENSGT00940000153686 #7	ENSGT00940000153277.A.a #8	ENSGT00940000156425	ENSGT00940000163210 #9	ENSGT00940000164004 #10	ENSGT00940000163463 #11	ENSGT00940000162380 #12	ENSGT00940000164683 #13	ENSGT00940000163292 #14	ENSGT00940000163151 #15	ENSGT00940000162984.b.a ##16	ENSGT00940000162984.a.a #16	ENSGT00940000162984.a.b ##16	ENSGT00940000163958 #18	ENSGT00390000003354 #20	ENSGT00390000001945 #22	ENSGT00640000091578 #24	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00940000155412.b #27	ENSGT00940000164135 #28	ENSGT00390000005065 #29	ENSGT00940000160969 #30	ENSGT00530000064158 #31	ENSGT01030000234518.C.a.a	ENSGT00510000047802.q.a #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311	ENSGT00940000162431
Cercopithecinae_a	ANCESTRAL SPECIES	3	ENSGT00940000153686 #7	ENSGT00940000153277.A.a #8	ENSGT00940000163210 #9	ENSGT00940000164004 #10	ENSGT00940000163463 #11	ENSGT00940000162380 #12	ENSGT00940000164683 #13	ENSGT00940000163292 #14	ENSGT00940000163151 #15	ENSGT00940000162984.b.a ##16	ENSGT00940000162984.a.a #16	ENSGT00940000162984.a.b ##16	ENSGT00940000163958 #18	ENSGT00390000003354 #20	ENSGT00390000004322.b.h.b #21	ENSGT00390000001945 #22	ENSGT00640000091578 #24	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00940000155412.b #27	ENSGT00940000164135 #28	ENSGT00390000005065 #29	ENSGT00940000160969 #30	ENSGT00530000064158 #31	ENSGT01030000234518.C.a.a	ENSGT00510000047802.r ##32	ENSGT00510000047802.q.a #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311
Macaca	ANCESTRAL SPECIES	21	ENSGT00940000153277.A.a #8	ENSGT00940000153686.v #7	ENSGT00940000163210 #9	ENSGT00940000164004 #10	ENSGT00940000163463 #11	ENSGT00940000162380 #12	ENSGT00940000164683 #13	ENSGT00940000163292 #14	ENSGT00940000163151 #15	ENSGT00940000162984.b.a ##16	ENSGT00940000162984.a.a #16	ENSGT00940000162984.a.b ##16	ENSGT00940000163958 #18	ENSGT00390000003354 #20	ENSGT00390000004322.b.h.b #21	ENSGT00390000001945 #22	ENSGT00640000091578 #24	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00940000155412.b #27	ENSGT00940000164135 #28	ENSGT00390000005065 #29	ENSGT00940000160969 #30	ENSGT00530000064158 #31	ENSGT01030000234518.C.a.a	ENSGT00510000047802.q.a #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311	ENSGT00940000162431
Macaca_a	ANCESTRAL SPECIES	1	ENSGT00940000153277.A.a #8	ENSGT00940000163210 #9	ENSGT00940000164004 #10	ENSGT00940000163463 #11	ENSGT00940000162380 #12	ENSGT00940000164683 #13	ENSGT00940000163292 #14	ENSGT00940000163151 #15	ENSGT00940000162984.b.a ##16	ENSGT00940000162984.a.a #16	ENSGT00940000163505.b.b.b.b.a #17	ENSGT00940000163958 #18	ENSGT01100000263539.b.a.a.a.a.a.b.b.a.a.a.a.a.b.a.a.b.b.b #19	ENSGT00390000003354 #20	ENSGT00390000004322.b.h.b #21	ENSGT00390000001945 #22	ENSGT00640000091578 #24	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00940000155412.b #27	ENSGT00940000164135 #28	ENSGT00390000005065 #29	ENSGT00940000160969 #30	ENSGT00530000064158 #31	ENSGT00510000047802.q.a #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311	ENSGT00940000162431	ENSGT00940000162184
Crab-eating macaque	MODERN SPECIES	10	ENSMFAG00000044718 #7	OR7E24 (ENSMFAG00000053134) #8	ZNF699 (ENSMFAG00000003916) #9	ZNF559 (ENSMFAG00000033248) #10	ZNF177 (ENSMFAG00000037498) #11	ZNF266 (ENSMFAG00000032036) #12	ZNF560 (ENSMFAG00000032192) #13	ZNF426 (ENSMFAG00000030946) #14	ZNF121 (ENSMFAG00000032217) #15	ENSMFAG00000031616 #16	ENSMFAG00000061888 #17	ZNF846 (ENSMFAG00000060041) #18	ENSMFAG00000053226 #19	FBXL12 (ENSMFAG00000042424) #20	ENSMFAG00000051369 #21	UBL5 (ENSMFAG00000001146) #22	ENSMFAG00000063155 #23	PIN1 (ENSMFAG00000039816) #24	OLFM2 (ENSMFAG00000002640) #25	COL5A3 (ENSMFAG00000043985) #26	RDH8 (ENSMFAG00000042121) #27	ENSMFAG00000051361 #28	SHFL (ENSMFAG00000041268) #29	ANGPTL6 (ENSMFAG00000038494) #30	PPAN (ENSMFAG00000042854) #31	EIF3G (ENSMFAG00000003465) #32	DNMT1 (ENSMFAG00000023786) #33	S1PR2 (ENSMFAG00000030545) #34	MRPL4 (ENSMFAG00000003526) #35	ENSMFAG00000063966 #36	ENSMFAG00000059527 #37
Rhesus	MODERN SPECIES	10	OR7D4 (ENSMMUG00000052663) #7	OR7E24 (ENSMMUG00000061994) #8	ZNF699 (ENSMMUG00000018887) #9	ZNF559 (ENSMMUG00000018884) #10	ZNF177 (ENSMMUG00000018883) #11	ZNF266 (ENSMMUG00000061661) #12	ZNF560 (ENSMMUG00000021154) #13	ZNF426 (ENSMMUG00000005694) #14	ZNF121 (ENSMMUG00000005695) #15	ENSMMUG00000051928 ##16	ZNF562 (ENSMMUG00000020452) #16	ENSMMUG00000055440 #17	ZNF846 (ENSMMUG00000048803) #18	ENSMMUG00000062422 #19	FBXL12 (ENSMMUG00000007875) #20	UBL5 (ENSMMUG00000007877) #22	ENSMMUG00000028889 ##23	PIN1 (ENSMMUG00000061103) #24	OLFM2 (ENSMMUG00000016596) #25	COL5A3 (ENSMMUG00000039980) #26	RDH8 (ENSMMUG00000011205) #27	ENSMMUG00000037639 #28	ENSMMUG00000051353	SHFL (ENSMMUG00000018138) #29	ANGPTL6 (ENSMMUG00000042707) #30	PPAN (ENSMMUG00000017211) #31	EIF3G (ENSMMUG00000017217) #32	DNMT1 (ENSMMUG00000014604) #33	ENSMMUG00000058342 ##37	S1PR2 (ENSMMUG00000006586) #34	MRPL4 (ENSMMUG00000001219) #35
Pig-tailed macaque	MODERN SPECIES	76	ENSMNEG00000031874 ##7	OR7D4 (ENSMNEG00000022452) #7	ZNF699 (ENSMNEG00000043733) #9	ZNF559 (ENSMNEG00000044448) #10	ZNF177 (ENSMNEG00000042801) #11	ZNF266 (ENSMNEG00000040675) #12	ENSMNEG00000041207	ZNF560 (ENSMNEG00000038648) #13	ZNF426 (ENSMNEG00000038890) #14	ZNF121 (ENSMNEG00000032321) #15	ZNF561 (ENSMNEG00000030418) ##16	ZNF562 (ENSMNEG00000021802) #16	ENSMNEG00000009315 ##16	ZNF846 (ENSMNEG00000044074) #18	FBXL12 (ENSMNEG00000043988) #20	UBL5 (ENSMNEG00000040515) #22	PIN1 (ENSMNEG00000034886) #24	OLFM2 (ENSMNEG00000035191) #25	COL5A3 (ENSMNEG00000031289) #26	RDH8 (ENSMNEG00000017486) #27	ENSMNEG00000037564 #28	SHFL (ENSMNEG00000038774) #29	ANGPTL6 (ENSMNEG00000034417) #30	PPAN (ENSMNEG00000031363) #31	P2RY11 (ENSMNEG00000019815)	EIF3G (ENSMNEG00000029643) #32	DNMT1 (ENSMNEG00000029351) #33	S1PR2 (ENSMNEG00000027107) #34	MRPL4 (ENSMNEG00000040746) #35	ICAM1 (ENSMNEG00000033129)	ICAM4 (ENSMNEG00000043426)
Cercopithecinae_b	ANCESTRAL SPECIES	13	ENSGT00940000153277.A.a #8	ENSGT00940000156425	ENSGT00940000163210 #9	ENSGT00940000164004 #10	ENSGT00940000163463 #11	ENSGT00940000162380 #12	ENSGT00940000164683 #13	ENSGT00940000163292 #14	ENSGT00940000163151 #15	ENSGT00940000162984.b.a ##16	ENSGT00940000162984.a.a #16	ENSGT00940000162984.a.b ##16	ENSGT00940000163958 #18	ENSGT00390000003354 #20	ENSGT00390000004322.b.h.b #21	ENSGT00390000001945 #22	ENSGT00640000091578 #24	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00940000155412.b #27	ENSGT00390000005065 #29	ENSGT00940000160969 #30	ENSGT00530000064158 #31	ENSGT01030000234518.C.a.a	ENSGT00510000047802.r ##32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311	ENSGT00940000162431	ENSGT00940000162184
Olive baboon	MODERN SPECIES	12	OR1M1 (ENSPANG00000042449)	ZNF317 (ENSPANG00000007764)	OR7D2 (ENSPANG00000030060)	OR7E24 (ENSPANG00000040049) #8	ENSPANG00000013863 #9	ZNF559 (ENSPANG00000013225) #10	ZNF177 (ENSPANG00000012124) #11	ZNF266 (ENSPANG00000029279) #12	ZNF560 (ENSPANG00000047310) #13	ZNF426 (ENSPANG00000017259) #14	ENSPANG00000009517 #15	ZNF561 (ENSPANG00000035007) ##16	ENSPANG00000047711 #18	FBXL12 (ENSPANG00000003096) #20	ENSPANG00000030257 #21	UBL5 (ENSPANG00000036048) #22	PIN1 (ENSPANG00000008464) #24	OLFM2 (ENSPANG00000004123) #25	COL5A3 (ENSPANG00000010734) #26	ENSPANG00000047295 #28	SHFL (ENSPANG00000029871) #29	ANGPTL6 (ENSPANG00000008463) #30	PPAN (ENSPANG00000005948) #31	DNMT1 (ENSPANG00000001264) #33	S1PR2 (ENSPANG00000010514) #34	MRPL4 (ENSPANG00000001265) #35	ICAM1 (ENSPANG00000009752)	ICAM4 (ENSPANG00000011444)	ICAM5 (ENSPANG00000017123)	ZGLP1 (ENSPANG00000005034)	FDX2 (ENSPANG00000035899)
Cercopithecinae_d	ANCESTRAL SPECIES	8	ENSGT00940000162241	ENSGT00940000156425	ENSGT00940000163210 #9	ENSGT00940000164004 #10	ENSGT00940000163463 #11	ENSGT00940000162380 #12	ENSGT00940000164683 #13	ENSGT00940000163292 #14	ENSGT00940000163151 #15	ENSGT00940000162984.b.a ##16	ENSGT00940000162984.a.a #16	ENSGT00940000162984.a.b ##16	ENSGT00940000163958 #18	ENSGT00390000003354 #20	ENSGT00390000004322.b.h.b #21	ENSGT00390000001945 #22	ENSGT00640000091578 #24	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00940000155412.b #27	ENSGT00390000005065 #29	ENSGT00940000160969 #30	ENSGT00530000064158 #31	ENSGT01030000234518.C.a.a	ENSGT00510000047802.r ##32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311	ENSGT00940000162431	ENSGT00940000162184
Drill	MODERN SPECIES	183															FBXL12 (ENSMLEG00000042931) #20	UBL5 (ENSMLEG00000028569) #22	PIN1 (ENSMLEG00000038056) #24	OLFM2 (ENSMLEG00000035502) #25	COL5A3 (ENSMLEG00000026681) #26	RDH8 (ENSMLEG00000000403) #27	SHFL (ENSMLEG00000041654) #29	ANGPTL6 (ENSMLEG00000039466) #30	PPAN (ENSMLEG00000042991) #31	P2RY11 (ENSMLEG00000033084)	EIF3G (ENSMLEG00000035345) ##32	DNMT1 (ENSMLEG00000038693) #33	S1PR2 (ENSMLEG00000011240) #34	MRPL4 (ENSMLEG00000041712) #35	ICAM1 (ENSMLEG00000034670)	ICAM4 (ENSMLEG00000032689)	ICAM5 (ENSMLEG00000040636)
Sooty mangabey	MODERN SPECIES	347					ZNF559 (ENSCATG00000040537) #10	ZNF177 (ENSCATG00000016473) #11	ZNF266 (ENSCATG00000030824) #12	ZNF560 (ENSCATG00000035370) #13	ZNF426 (ENSCATG00000041277) #14	ZNF121 (ENSCATG00000032739) #15	ZNF562 (ENSCATG00000044146) #16	ENSCATG00000033435 ##16	ZNF846 (ENSCATG00000030061) #18	FBXL12 (ENSCATG00000042681) #20	ENSCATG00000021047 #21	UBL5 (ENSCATG00000033567) #22	PIN1 (ENSCATG00000043966) #24	OLFM2 (ENSCATG00000030581) #25	COL5A3 (ENSCATG00000036440) #26	RDH8 (ENSCATG00000032223) #27	SHFL (ENSCATG00000035028) #29	ANGPTL6 (ENSCATG00000037030) #30	PPAN (ENSCATG00000040554) #31	EIF3G (ENSCATG00000031281) ##32	P2RY11 (ENSCATG00000041853)	DNMT1 (ENSCATG00000031001) #33	S1PR2 (ENSCATG00000018961) #34	ENSCATG00000033090	ICAM1 (ENSCATG00000036475)	ICAM4 (ENSCATG00000040339)	ICAM5 (ENSCATG00000043572)
Vervet Monkey	MODERN SPECIES	25	MBD3L1 (ENSCSAG00000018831)	ENSCSAG00000007814	OR1M1 (ENSCSAG00000018832)	ZNF317 (ENSCSAG00000007764)	OR7D2 (ENSCSAG00000018833)	ENSCSAG00000018834	ZNF699 (ENSCSAG00000007725) #9	ZNF559 (ENSCSAG00000007695) #10	ZNF177 (ENSCSAG00000007691) #11	ZNF266 (ENSCSAG00000007688) #12	ZNF560 (ENSCSAG00000007675) #13	ZNF426 (ENSCSAG00000007667) #14	ZNF121 (ENSCSAG00000007662) #15	ZNF561 (ENSCSAG00000007656) ##16	ZNF846 (ENSCSAG00000007652) #18	UBL5 (ENSCSAG00000007645) #22	FBXL12 (ENSCSAG00000007639) #20	PIN1 (ENSCSAG00000007637) #24	OLFM2 (ENSCSAG00000007635) #25	COL5A3 (ENSCSAG00000007588) #26	ENSCSAG00000007448	ENSCSAG00000007442 #28	SHFL (ENSCSAG00000007434) #29	ANGPTL6 (ENSCSAG00000007427) #30	PPAN (ENSCSAG00000007423) #31	P2RY11 (ENSCSAG00000007416)	ENSCSAG00000007406 #32	DNMT1 (ENSCSAG00000007378) #33	S1PR2 (ENSCSAG00000018835) #34	MRPL4 (ENSCSAG00000007362) #35	ICAM1 (ENSCSAG00000007356)
Rhinopithecus	ANCESTRAL SPECIES	5	ENSGT00940000156425	ENSGT00940000153686 #7	ENSGT00940000163210 #9	ENSGT00940000164004 #10	ENSGT00940000163463 #11	ENSGT00940000162380 #12	ENSGT00940000164683 #13	ENSGT00550000074698.k.b.b	ENSGT00940000163292 #14	ENSGT00940000163151 #15	ENSGT00940000162984.b.a ##16	ENSGT00940000162984.a.a #16	ENSGT00940000162984.a.b ##16	ENSGT00940000163958 #18	ENSGT00390000003354 #20	ENSGT00390000001945 #22
Black snub-nosed monkey	DUPLICATION
Black snub-nosed monkey	MODERN SPECIES	788																ENSRBIG00000024180 #22
Black snub-nosed monkey	MODERN SPECIES	631	ENSRBIG00000023121	ENSRBIG00000029216 #7	ZNF699 (ENSRBIG00000042302) #9	ZNF559 (ENSRBIG00000037439) #10	ZNF177 (ENSRBIG00000035824) #11	ZNF266 (ENSRBIG00000018839) #12	ZNF560 (ENSRBIG00000037288) #13	ENSRBIG00000032419	ZNF426 (ENSRBIG00000038581) #14	ZNF121 (ENSRBIG00000038954) #15	ZNF561 (ENSRBIG00000031324) ##16	ENSRBIG00000042262 #16	ENSRBIG00000003283 #16	ZNF846 (ENSRBIG00000038305) #18	FBXL12 (ENSRBIG00000040385) #20	ENSRBIG00000022614 #22	ENSRBIG00000026975 #24	ENSRBIG00000031874 #25	COL5A3 (ENSRBIG00000044533) #26	ENSRBIG00000037985	SHFL (ENSRBIG00000033517) #29	ANGPTL6 (ENSRBIG00000030201) #30	PPAN (ENSRBIG00000041320) #31	P2RY11 (ENSRBIG00000029626)	EIF3G (ENSRBIG00000041693) #32	DNMT1 (ENSRBIG00000038063) #33	ENSRBIG00000031673	S1PR2 (ENSRBIG00000021988) #34	ENSRBIG00000032283 #35	ICAM1 (ENSRBIG00000039899)	ICAM4 (ENSRBIG00000042370)
Golden snub-nosed monkey	DUPLICATION
Golden snub-nosed monkey	MODERN SPECIES	3047													SLC35F4 (ENSRROG00000032537)	CCDC198 (ENSRROG00000031906)	NAA30 (ENSRROG00000042622)	ENSRROG00000003751 #22
Golden snub-nosed monkey	MODERN SPECIES	2458															PREX1 (ENSRROG00000035821)	ENSRROG00000001690 #22	ARFGEF2 (ENSRROG00000043149)	CSE1L (ENSRROG00000021686)	STAU1 (ENSRROG00000039008)	DDX27 (ENSRROG00000024811)	ENSRROG00000003252	ZNFX1 (ENSRROG00000029056)	ENSRROG00000034942	KCNB1 (ENSRROG00000029157)	PTGIS (ENSRROG00000043304)	ENSRROG00000029732	B4GALT5 (ENSRROG00000028386)	SLC9A8 (ENSRROG00000030129)	SPATA2 (ENSRROG00000045660)	RNF114 (ENSRROG00000038494)	SNAI1 (ENSRROG00000043753)
Hominoidea	ANCESTRAL SPECIES		ENSGT00940000164306	ENSGT00940000153686 #7	ENSGT00940000153277.A.a #8	ENSGT00940000163210 #9	ENSGT00940000164004 #10	ENSGT00940000163463 #11	ENSGT00940000162380 #12	ENSGT00940000164683 #13	ENSGT00940000163292 #14	ENSGT00940000163151 #15	ENSGT00940000162984.b.a ##16	ENSGT00940000162984.a.a #16	ENSGT00940000162984.a.b ##16	ENSGT00940000163958 #18	ENSGT00390000003354 #20	ENSGT00390000001945 #22	ENSGT00640000091578.n #24	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00940000155412.b #27	ENSGT00390000005065 #29	ENSGT00940000160969 #30	ENSGT00530000064158 #31	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311	ENSGT00940000162431	ENSGT00940000162184
Hominidae	ANCESTRAL SPECIES		ENSGT00940000164306	ENSGT00940000153686.w #7	ENSGT00940000153277.A.a #8	ENSGT00940000163210 #9	ENSGT00940000164004 #10	ENSGT00940000163463 #11	ENSGT00940000162380 #12	ENSGT00940000164683 #13	ENSGT00940000163292 #14	ENSGT00940000163151 #15	ENSGT00940000162984.b.a ##16	ENSGT00940000162984.a.a #16	ENSGT00940000162984.a.b ##16	ENSGT00940000163958 #18	ENSGT00390000003354 #20	ENSGT00390000001945 #22	ENSGT00640000091578.n #24	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00940000155412.b #27	ENSGT00390000005065 #29	ENSGT00940000160969 #30	ENSGT00530000064158 #31	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311	ENSGT00940000162431	ENSGT00940000162184
Orangutan	MODERN SPECIES	10	OR7D4 (ENSPPYG00000034246) #7	ENSPPYG00000035121 #7	OR7E24 (ENSPPYG00000034787) #8	ZNF699 (ENSPPYG00000037902) #9	ZNF559 (ENSPPYG00000009525) #10	ZNF177 (ENSPPYG00000009526) #11	ZNF266 (ENSPPYG00000009527) #12	ZNF560 (ENSPPYG00000009528) #13	ZNF426 (ENSPPYG00000009529) #14	ZNF121 (ENSPPYG00000038970) #15	ZNF561 (ENSPPYG00000009531) ##16	ZNF562 (ENSPPYG00000037171) #16	ENSPPYG00000009533 ##16	ZNF846 (ENSPPYG00000009534) #18	FBXL12 (ENSPPYG00000009535) #20	UBL5 (ENSPPYG00000009536) #22	PIN1 (ENSPPYG00000009537) #24	OLFM2 (ENSPPYG00000009538) #25	COL5A3 (ENSPPYG00000009539) #26	ENSPPYG00000009540	SHFL (ENSPPYG00000009541) #29	ENSPPYG00000009542 #30	PPAN (ENSPPYG00000030196) #31	P2RY11 (ENSPPYG00000033614)	EIF3G (ENSPPYG00000009544) #32	DNMT1 (ENSPPYG00000009545) #33	ENSPPYG00000009546 #34	ENSPPYG00000009547 #35	ICAM1 (ENSPPYG00000009548)	ENSPPYG00000009549	ICAM5 (ENSPPYG00000031661)
Homo/Pan/Gorilla group	ANCESTRAL SPECIES		ENSGT00940000153277.A.a #8	ENSGT00940000153686.w #7	ENSGT00940000153686.x #7	ENSGT00940000163210 #9	ENSGT00940000164004.a #10	ENSGT00940000163463 #11	ENSGT00940000162380 #12	ENSGT00940000164683 #13	ENSGT00940000163292 #14	ENSGT00940000163151 #15	ENSGT00940000162984.b.a ##16	ENSGT00940000162984.a.a #16	ENSGT00940000162984.a.b ##16	ENSGT00940000163958 #18	ENSGT00390000003354 #20	ENSGT00390000001945 #22	ENSGT00640000091578.n #24	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00940000155412.b #27	ENSGT00390000005065 #29	ENSGT00940000160969 #30	ENSGT00530000064158 #31	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311	ENSGT00940000162431	ENSGT00940000162184
Gorilla	DUPLICATION
Gorilla	MODERN SPECIES	10	OR7G1 (ENSGGOG00000015244)	OR7G3 (ENSGGOG00000006778)	ENSGGOG00000042794	OR7D2 (ENSGGOG00000037214)	OR7D4 (ENSGGOG00000043963) #7	ENSGGOG00000039074 #7	ZNF559 (ENSGGOG00000012935) #10	ZNF177 (ENSGGOG00000011137) #11	ZNF266 (ENSGGOG00000036368) #12	ZNF560 (ENSGGOG00000004579) #13	ZNF426 (ENSGGOG00000014083) #14	ZNF121 (ENSGGOG00000009959) #15	ZNF562 (ENSGGOG00000003476) #16	ZNF846 (ENSGGOG00000011206) #18	FBXL12 (ENSGGOG00000005995) #20	UBL5 (ENSGGOG00000005999) #22	ENSGGOG00000006008 #24	OLFM2 (ENSGGOG00000006013) #25	COL5A3 (ENSGGOG00000015350) #26	RDH8 (ENSGGOG00000012240) #27	SHFL (ENSGGOG00000016174) #29	ANGPTL6 (ENSGGOG00000016180) #30	PPAN (ENSGGOG00000039459) #31	P2RY11 (ENSGGOG00000005418)	EIF3G (ENSGGOG00000005434) #32	DNMT1 (ENSGGOG00000016574) #33	S1PR2 (ENSGGOG00000004193) #34	ENSGGOG00000036529 #35	ICAM1 (ENSGGOG00000005980)	ICAM4 (ENSGGOG00000005987)	ICAM5 (ENSGGOG00000005992)
Gorilla	MODERN SPECIES		TTC22 (ENSGGOG00000005432)	LEXM (ENSGGOG00000005435)	DHCR24 (ENSGGOG00000010859)	TMEM61 (ENSGGOG00000009578)	BSND (ENSGGOG00000005331)	PCSK9 (ENSGGOG00000003530)	USP24 (ENSGGOG00000004312)	ENSGGOG00000042199	PLPP3 (ENSGGOG00000000309)	PRKAA2 (ENSGGOG00000009076)	FYB2 (ENSGGOG00000009087)	C8A (ENSGGOG00000013973)	C8B (ENSGGOG00000008556)	DAB1 (ENSGGOG00000024836)	OMA1 (ENSGGOG00000001213)	ENSGGOG00000025125 #22	TACSTD2 (ENSGGOG00000012166)	ENSGGOG00000041028	MYSM1 (ENSGGOG00000005238)	FGGY (ENSGGOG00000036583)	HOOK1 (ENSGGOG00000015355)	CYP2J2 (ENSGGOG00000001607)	C1orf87 (ENSGGOG00000011908)	ENSGGOG00000027445	ENSGGOG00000043710	ENSGGOG00000036939	ENSGGOG00000043907	TM2D1 (ENSGGOG00000008515)	PATJ (ENSGGOG00000010129)	ENSGGOG00000023722	L1TD1 (ENSGGOG00000026365)
Homo/Pan group	ANCESTRAL SPECIES		ENSGT00940000153277.A.a #8	ENSGT00940000153686.w #7	ENSGT00940000153686.x #7	ENSGT00940000163210 #9	ENSGT00940000164004.a #10	ENSGT00940000163463 #11	ENSGT00940000162380 #12	ENSGT00940000164683 #13	ENSGT00940000163292 #14	ENSGT00940000163151 #15	ENSGT00940000162984.b.a ##16	ENSGT00940000162984.a.a #16	ENSGT00940000162984.a.b ##16	ENSGT00940000163958 #18	ENSGT00390000003354 #20	ENSGT00390000001945 #22	ENSGT00640000091578.n #24	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00940000155412.b #27	ENSGT00390000005065 #29	ENSGT00940000160969 #30	ENSGT00530000064158 #31	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311	ENSGT00940000162431	ENSGT00940000162184
Human	MODERN SPECIES	10	OR7D2 (ENSG00000188000)	OR7D4 (ENSG00000174667) #7	OR7E24 (ENSG00000237521) #8	ZNF699 (ENSG00000196110) #9	ZNF559 (ENSG00000188321) #10	ZNF559-ZNF177 (ENSG00000270011)	ZNF177 (ENSG00000188629) #11	ZNF266 (ENSG00000174652) #12	ZNF560 (ENSG00000198028) #13	ZNF426 (ENSG00000130818) #14	ZNF121 (ENSG00000197961) #15	ZNF561 (ENSG00000171469) ##16	ZNF562 (ENSG00000171466) #16	ZNF846 (ENSG00000196605) #18	FBXL12 (ENSG00000127452) #20	UBL5 (ENSG00000198258) #22	PIN1 (ENSG00000127445) #24	OLFM2 (ENSG00000105088) #25	COL5A3 (ENSG00000080573) #26	RDH8 (ENSG00000080511) #27	SHFL (ENSG00000130813) #29	ANGPTL6 (ENSG00000130812) #30	PPAN-P2RY11 (ENSG00000243207)	PPAN (ENSG00000130810) #31	P2RY11 (ENSG00000244165)	EIF3G (ENSG00000130811) #32	DNMT1 (ENSG00000130816) #33	S1PR2 (ENSG00000267534) #34	MRPL4 (ENSG00000105364) #35	ICAM1 (ENSG00000090339)	ICAM4 (ENSG00000105371)
Pan	ANCESTRAL SPECIES	14	ENSGT00940000153277.A.a #8	ENSGT00940000153686.w #7	ENSGT00940000153686.x #7	ENSGT00940000163210 #9	ENSGT00940000164004.a #10	ENSGT00940000163463 #11	ENSGT00940000162380 #12	ENSGT00940000164683 #13	ENSGT00940000163292 #14	ENSGT00940000163151 #15	ENSGT00940000162984.b.a ##16	ENSGT00940000162984.a.a #16	ENSGT00940000162984.a.b ##16	ENSGT00940000163958 #18	ENSGT00390000003354 #20	ENSGT00390000001945 #22	ENSGT00640000091578.n #24	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00940000155412.b #27	ENSGT00390000005065 #29	ENSGT00940000160969 #30	ENSGT00530000064158 #31	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311	ENSGT00940000162431	ENSGT00940000162184
Chimpanzee	MODERN SPECIES	10	ENSPTRG00000048915 #8	OR7D4 (ENSPTRG00000043821) #7	OR7D1 (ENSPTRG00000029141) #7	ZNF699 (ENSPTRG00000044966) #9	ZNF559 (ENSPTRG00000010444) #10	ZNF177 (ENSPTRG00000010445) #11	ZNF266 (ENSPTRG00000023219) #12	ZNF560 (ENSPTRG00000010442) #13	ZNF426 (ENSPTRG00000010447) #14	ZNF121 (ENSPTRG00000022881) #15	ZNF561 (ENSPTRG00000040667) ##16	ZNF562 (ENSPTRG00000010449) #16	ENSPTRG00000010448 ##16	ZNF846 (ENSPTRG00000029120) #18	FBXL12 (ENSPTRG00000010450) #20	UBL5 (ENSPTRG00000010451) #22	PIN1 (ENSPTRG00000010452) #24	OLFM2 (ENSPTRG00000010453) #25	COL5A3 (ENSPTRG00000010454) #26	RDH8 (ENSPTRG00000010455) #27	SHFL (ENSPTRG00000010457) #29	ANGPTL6 (ENSPTRG00000010458) #30	PPAN (ENSPTRG00000010459) #31	P2RY11 (ENSPTRG00000040877)	EIF3G (ENSPTRG00000010460) #32	DNMT1 (ENSPTRG00000010461) #33	S1PR2 (ENSPTRG00000041995) #34	MRPL4 (ENSPTRG00000010462) #35	ICAM1 (ENSPTRG00000010463)	ICAM4 (ENSPTRG00000022810)	ICAM5 (ENSPTRG00000010464)
Bonobo	MODERN SPECIES	10	ENSPPAG00000033337 #8	OR7D4 (ENSPPAG00000007019) #7	ENSPPAG00000020138 #7	ZNF699 (ENSPPAG00000036036) #9	ENSPPAG00000039186 #10	ENSPPAG00000033819 #10	ENSPPAG00000034550 #11	ZNF266 (ENSPPAG00000035485) #12	ZNF426 (ENSPPAG00000027305) #14	ZNF121 (ENSPPAG00000021595) #15	ZNF561 (ENSPPAG00000037602) ##16	ZNF562 (ENSPPAG00000033049) #16	ENSPPAG00000037783 ##16	ZNF846 (ENSPPAG00000028977) #18	FBXL12 (ENSPPAG00000034634) #20	UBL5 (ENSPPAG00000025275) #22	ENSPPAG00000032269 #24	OLFM2 (ENSPPAG00000041568) #25	COL5A3 (ENSPPAG00000043767) #26	RDH8 (ENSPPAG00000033700) #27	SHFL (ENSPPAG00000037643) #29	ENSPPAG00000043275 #30	PPAN (ENSPPAG00000039744) #31	P2RY11 (ENSPPAG00000041793)	EIF3G (ENSPPAG00000027888) #32	DNMT1 (ENSPPAG00000027461) #33	S1PR2 (ENSPPAG00000019512) #34	ENSPPAG00000041740 #35	ICAM1 (ENSPPAG00000034232)	ICAM4 (ENSPPAG00000035190)	ICAM5 (ENSPPAG00000030844)
Gibbon	DUPLICATION
Gibbon	MODERN SPECIES	22	ZNF330 (ENSNLEG00000033135)	IL15 (ENSNLEG00000005257)	INPP4B (ENSNLEG00000005284)	USP38 (ENSNLEG00000005343)	GAB1 (ENSNLEG00000005366)	SMARCA5 (ENSNLEG00000005383)	FREM3 (ENSNLEG00000005425)	ENSNLEG00000032234	HHIP (ENSNLEG00000005430)	ANAPC10 (ENSNLEG00000005453)	ENSNLEG00000005460	OTUD4 (ENSNLEG00000005494)	SMAD1 (ENSNLEG00000005537)	MMAA (ENSNLEG00000032493)	ENSNLEG00000029298	ENSNLEG00000018924 #22	C4orf51 (ENSNLEG00000005557)	ZNF827 (ENSNLEG00000005560)	LSM6 (ENSNLEG00000005584)	REELD1 (ENSNLEG00000035386)	SLC10A7 (ENSNLEG00000032871)	ENSNLEG00000036026	POU4F2 (ENSNLEG00000005619)	TTC29 (ENSNLEG00000005624)	EDNRA (ENSNLEG00000005640)	ENSNLEG00000005651	PRMT9 (ENSNLEG00000005657)	ARHGAP10 (ENSNLEG00000005671)	NR3C2 (ENSNLEG00000005677)	IQCM (ENSNLEG00000027154)	ENSNLEG00000027456
Gibbon	MODERN SPECIES		ZNF317 (ENSNLEG00000029885)	ENSNLEG00000027399	OR7D2 (ENSNLEG00000019139)	ZNF699 (ENSNLEG00000011963) #9	ZNF559 (ENSNLEG00000011969) #10	ZNF177 (ENSNLEG00000011974) #11	ZNF266 (ENSNLEG00000028253) #12	ZNF560 (ENSNLEG00000011981) #13	ZNF426 (ENSNLEG00000011985) #14	ZNF121 (ENSNLEG00000011988) #15	ENSNLEG00000027692 ##16	ZNF562 (ENSNLEG00000011989) #16	ZNF846 (ENSNLEG00000011991) #18	ENSNLEG00000034213	FBXL12 (ENSNLEG00000031752) #20	ENSNLEG00000030828 #22	ENSNLEG00000011999 #24	OLFM2 (ENSNLEG00000012008) #25	COL5A3 (ENSNLEG00000012017) #26	RDH8 (ENSNLEG00000031733) #27	ENSNLEG00000012032 #29	ANGPTL6 (ENSNLEG00000012043) #30	PPAN (ENSNLEG00000012048) #31	P2RY11 (ENSNLEG00000034093)	EIF3G (ENSNLEG00000012067) #32	DNMT1 (ENSNLEG00000012092) #33	ENSNLEG00000012155 #35	ICAM1 (ENSNLEG00000012158)	ICAM4 (ENSNLEG00000028505)	ZGLP1 (ENSNLEG00000029808)	FDX2 (ENSNLEG00000012175)
Platyrrhini	ANCESTRAL SPECIES	16	ENSGT00950000183005.b.c.a	ENSGT00940000163044	ENSGT00940000163146	ENSGT00940000162241	ENSGT00940000163210 #9	ENSGT00940000164004 #10	ENSGT00940000163463 #11	ENSGT00940000162380 #12	ENSGT00940000164683 #13	ENSGT00940000163292 #14	ENSGT00940000163151 #15	ENSGT00940000162984.c.a #16	ENSGT00940000162984.d #16	ENSGT00940000163958 #18	ENSGT00390000003354 #20	ENSGT00390000001945 #22	ENSGT00640000091578 #24	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00940000155412.b #27	ENSGT00390000005065 #29	ENSGT00940000160969 #30	ENSGT00530000064158 #31	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311	ENSGT00940000162431	ENSGT00940000162184
Cebidae	ANCESTRAL SPECIES	20	ENSGT00950000183005.b.c.a	ENSGT00940000163044	ENSGT00940000163146	ENSGT00940000162241	ENSGT00940000163210 #9	ENSGT00940000164004 #10	ENSGT00940000163463 #11	ENSGT00940000162380 #12	ENSGT00940000164683 #13	ENSGT00940000163292 #14	ENSGT00940000163151 #15	ENSGT00940000162984.c.a #16	ENSGT00940000162984.d #16	ENSGT00940000163958 #18	ENSGT00390000003354 #20	ENSGT00390000001945 #22	ENSGT00640000091578 #24	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00940000155412.b #27	ENSGT00390000005065 #29	ENSGT00940000160969 #30	ENSGT00530000064158 #31	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #32	ENSGT00390000005100.n #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311	ENSGT00940000162431	ENSGT00940000162184
Marmoset	MODERN SPECIES	14	ZNF558 (ENSCJAG00000011049)	MBD3L1 (ENSCJAG00000022428)	OR1M1 (ENSCJAG00000022913)	OR7G3 (ENSCJAG00000040900)	ZNF317 (ENSCJAG00000006214)	ZNF699 (ENSCJAG00000006203) #9	ENSCJAG00000044628 #10	ZNF177 (ENSCJAG00000006188) #11	ZNF266 (ENSCJAG00000006176) #12	ZNF560 (ENSCJAG00000071525) #13	ZNF426 (ENSCJAG00000006145) #14	ENSCJAG00000006139 #16	ENSCJAG00000006113 #16	ENSCJAG00000006108 #18	FBXL12 (ENSCJAG00000065299) #20	UBL5 (ENSCJAG00000006097) #22	PIN1 (ENSCJAG00000048251) #24	OLFM2 (ENSCJAG00000006061) #25	COL5A3 (ENSCJAG00000006008) #26	RDH8 (ENSCJAG00000005990) #27	SHFL (ENSCJAG00000005935) #29	ANGPTL6 (ENSCJAG00000005919) #30	PPAN (ENSCJAG00000039296) #31	P2RY11 (ENSCJAG00000039396)	EIF3G (ENSCJAG00000005889) #32	DNMT1 (ENSCJAG00000005794) #33	S1PR2 (ENSCJAG00000022912) #34	MRPL4 (ENSCJAG00000005764) #35	ICAM1 (ENSCJAG00000047562)	ICAM4 (ENSCJAG00000005760)	ICAM5 (ENSCJAG00000005726)
Cebidae_a	ANCESTRAL SPECIES	9	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000160844.a	ENSGT00940000162241	ENSGT00940000163210 #9	ENSGT00940000164004 #10	ENSGT00940000163463 #11	ENSGT00940000162380 #12	ENSGT00940000163292 #14	ENSGT00940000163151 #15	ENSGT00940000162984.c.a #16	ENSGT00940000162984.d #16	ENSGT00390000003354 #20	ENSGT00390000001945 #22	ENSGT00640000091578 #24	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00940000155412.b #27	ENSGT00390000005065 #29	ENSGT00940000160969 #30	ENSGT00530000064158 #31	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #32	ENSGT00390000005100.n #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311	ENSGT00940000162431	ENSGT00940000162184
Bolivian squirrel monkey	MODERN SPECIES	150	PRAM1 (ENSSBOG00000035353)	ZNF414 (ENSSBOG00000034279)	MYO1F (ENSSBOG00000013487)	ADAMTS10 (ENSSBOG00000033434)	ZNF558 (ENSSBOG00000026599)	ZNF317 (ENSSBOG00000018054)	ENSSBOG00000024235	ENSSBOG00000033134	ZNF699 (ENSSBOG00000020395) #9	ZNF177 (ENSSBOG00000022388) #11	ZNF266 (ENSSBOG00000022373) #12	ZNF426 (ENSSBOG00000033589) #14	ZNF121 (ENSSBOG00000018489) #15	ENSSBOG00000029865 #16	FBXL12 (ENSSBOG00000032393) #20	UBL5 (ENSSBOG00000030597) #22	PIN1 (ENSSBOG00000021702) #24	OLFM2 (ENSSBOG00000020219) #25	COL5A3 (ENSSBOG00000023264) #26	RDH8 (ENSSBOG00000036009) #27	SHFL (ENSSBOG00000020470) #29	ANGPTL6 (ENSSBOG00000013464) #30	PPAN (ENSSBOG00000026246) #31	P2RY11 (ENSSBOG00000034093)	EIF3G (ENSSBOG00000006718) #32	DNMT1 (ENSSBOG00000035240) #33	S1PR2 (ENSSBOG00000017418) #34	MRPL4 (ENSSBOG00000020666) #35	ICAM1 (ENSSBOG00000023183)	ICAM4 (ENSSBOG00000016504)	ICAM5 (ENSSBOG00000021550)
Capuchin	DUPLICATION
Capuchin	MODERN SPECIES	163													C1orf87 (ENSCCAG00000027605)	CYP2J2 (ENSCCAG00000027549)	HOOK1 (ENSCCAG00000006471)	ENSCCAG00000025106 #22	FGGY (ENSCCAG00000033989)	MYSM1 (ENSCCAG00000029058)	TACSTD2 (ENSCCAG00000032228)	OMA1 (ENSCCAG00000022811)	ENSCCAG00000022246	DAB1 (ENSCCAG00000024787)	C8B (ENSCCAG00000031384)	C8A (ENSCCAG00000024662)	FYB2 (ENSCCAG00000027589)	PRKAA2 (ENSCCAG00000035336)	PLPP3 (ENSCCAG00000001330)	ENSCCAG00000022168	USP24 (ENSCCAG00000027655)	PCSK9 (ENSCCAG00000036131)	ENSCCAG00000030255
Capuchin	MODERN SPECIES	263	MYO1F (ENSCCAG00000035877)	ADAMTS10 (ENSCCAG00000028986)	ZNF558 (ENSCCAG00000012617)	ENSCCAG00000024658	ZNF317 (ENSCCAG00000018106)	ZNF699 (ENSCCAG00000034661) #9	ENSCCAG00000027457 #10	ZNF177 (ENSCCAG00000034694) #11	ZNF266 (ENSCCAG00000031253) #12	ENSCCAG00000020760	ZNF426 (ENSCCAG00000035400) #14	ZNF121 (ENSCCAG00000030925) #15	ENSCCAG00000027298 #16	ENSCCAG00000037798 #16	FBXL12 (ENSCCAG00000024683) #20	UBL5 (ENSCCAG00000021270) #22	PIN1 (ENSCCAG00000035602) #24	OLFM2 (ENSCCAG00000029162) #25	COL5A3 (ENSCCAG00000035804) #26	RDH8 (ENSCCAG00000030137) #27	SHFL (ENSCCAG00000030128) #29	ANGPTL6 (ENSCCAG00000020269) #30	PPAN (ENSCCAG00000032527) #31	P2RY11 (ENSCCAG00000030662)	EIF3G (ENSCCAG00000013164) #32	ENSCCAG00000034652 #33	S1PR2 (ENSCCAG00000019768) #34	MRPL4 (ENSCCAG00000036054) #35	ICAM1 (ENSCCAG00000028706)	ICAM4 (ENSCCAG00000035684)	ICAM5 (ENSCCAG00000034532)
Tarsier	MODERN SPECIES	4395														ZNF846 (ENSTSYG00000025832) #18	FBXL12 (ENSTSYG00000012528) #20	UBL5 (ENSTSYG00000004329) #22	PIN1 (ENSTSYG00000034667) #24	OLFM2 (ENSTSYG00000025641) #25	COL5A3 (ENSTSYG00000033321) #26	RDH8 (ENSTSYG00000013769) #27	ANGPTL6 (ENSTSYG00000035617) #30	ENSTSYG00000034845 #31
Strepsirrhini	ANCESTRAL SPECIES	28	ENSGT00950000183036.b	ENSGT00940000162948	ENSGT00390000014215	ENSGT00390000000427	ENSGT00940000157375	ENSGT00940000154146.b.b.b	ENSGT00940000163210 #9	ENSGT00940000164004 #10	ENSGT00940000163463 #11	ENSGT00940000162380 #12	ENSGT00940000164683 #13	ENSGT00940000163292 #14	ENSGT00940000163151 #15	ENSGT00940000163958 #18	ENSGT00390000003354 #20	ENSGT00390000001945 #22	ENSGT00640000091578 #24	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00940000155412.b #27	ENSGT00940000164135 #28	ENSGT00390000005065 #29	ENSGT00940000160969 #30	ENSGT00530000064158 #31	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311	ENSGT00940000162431
Bushbaby	DUPLICATION
Bushbaby	DUPLICATION
Bushbaby	DUPLICATION
Bushbaby	MODERN SPECIES	180						ENSOGAG00000002881	GPM6B (ENSOGAG00000002878)	OFD1 (ENSOGAG00000002873)	ENSOGAG00000002870	RAB9A (ENSOGAG00000002868)	TCEANC (ENSOGAG00000002867)	EGFL6 (ENSOGAG00000002863)	TLR8 (ENSOGAG00000029799)	TLR7 (ENSOGAG00000016092)	PRPS2 (ENSOGAG00000016087)	ENSOGAG00000027467 #22	FRMPD4 (ENSOGAG00000008378)	ENSOGAG00000028835	MSL3 (ENSOGAG00000005030)	AMELX (ENSOGAG00000034697)	ARHGAP6 (ENSOGAG00000003545)	HCCS (ENSOGAG00000003543)	ENSOGAG00000034817	MID1 (ENSOGAG00000014951)	ENSOGAG00000033369	CLCN4 (ENSOGAG00000014456)	WWC3 (ENSOGAG00000016711)	ENSOGAG00000001498	ENSOGAG00000006267	SHROOM2 (ENSOGAG00000026896)	GPR143 (ENSOGAG00000024603)
Bushbaby	MODERN SPECIES	516																ENSOGAG00000034410 #22	ENSOGAG00000028405
Bushbaby	MODERN SPECIES	294	IP6K2 (ENSOGAG00000006819)	PRKAR2A (ENSOGAG00000006822)	SLC25A20 (ENSOGAG00000001847)	ARIH2 (ENSOGAG00000002263)	P4HTM (ENSOGAG00000003931)	WDR6 (ENSOGAG00000003935)	DALRD3 (ENSOGAG00000003937)	NDUFAF3 (ENSOGAG00000003941)	IMPDH2 (ENSOGAG00000003945)	QRICH1 (ENSOGAG00000033740)	QARS1 (ENSOGAG00000003954)	USP19 (ENSOGAG00000003957)	LAMB2 (ENSOGAG00000003963)	CCDC71 (ENSOGAG00000015471)	KLHDC8B (ENSOGAG00000003967)	ENSOGAG00000034043 #22	IHO1 (ENSOGAG00000029823)	ENSOGAG00000029272	C3orf62 (ENSOGAG00000001876)	USP4 (ENSOGAG00000001877)	GPX1 (ENSOGAG00000001880)	ENSOGAG00000028489	TCTA (ENSOGAG00000001882)	AMT (ENSOGAG00000001884)	NICN1 (ENSOGAG00000001885)	DAG1 (ENSOGAG00000014849)	BSN (ENSOGAG00000025887)	APEH (ENSOGAG00000011788)	MST1 (ENSOGAG00000011794)	RNF123 (ENSOGAG00000011796)	AMIGO3 (ENSOGAG00000024741)
Bushbaby	MODERN SPECIES	148	FBXL7 (ENSOGAG00000003172)	ENSOGAG00000024319	ANKH (ENSOGAG00000006664)	OTULIN (ENSOGAG00000008440)	OTULINL (ENSOGAG00000014270)	TRIO (ENSOGAG00000014252)	DNAH5 (ENSOGAG00000009433)	CTNND2 (ENSOGAG00000005411)	ENSOGAG00000034923	ANKRD33B (ENSOGAG00000009776)	ROPN1L (ENSOGAG00000002306)	MARCHF6 (ENSOGAG00000002304)	CMBL (ENSOGAG00000016909)	CCT5 (ENSOGAG00000029948)	ATPSCKMT (ENSOGAG00000003583)	ENSOGAG00000024134 #22	ENSOGAG00000031227	TAS2R1 (ENSOGAG00000016076)	SEMA5A (ENSOGAG00000016380)	MTRR (ENSOGAG00000001029)	FASTKD3 (ENSOGAG00000001028)	CFAP90 (ENSOGAG00000028915)	ADCY2 (ENSOGAG00000001027)
Lemuriformes	ANCESTRAL SPECIES	35	ENSGT00950000183036.b	ENSGT00940000162948	ENSGT00390000014215	ENSGT00390000000427	ENSGT00940000157375	ENSGT00940000154146.b.b.b	ENSGT00940000163210 #9	ENSGT00940000164004 #10	ENSGT00940000163463 #11	ENSGT00940000162380 #12	ENSGT00940000164683 #13	ENSGT00940000163292 #14	ENSGT00940000163151 #15	ENSGT00940000163958 #18	ENSGT00390000003354 #20	ENSGT00390000001945 #22	ENSGT00640000091578 #24	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00940000155412.b #27	ENSGT00940000164135 #28	ENSGT00390000005065 #29	ENSGT00940000160969 #30	ENSGT00530000064158 #31	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311	ENSGT00940000162431
Mouse lemur	MODERN SPECIES	16	XAB2 (ENSMICG00000010546)	CAMSAP3 (ENSMICG00000000437)	PNPLA6 (ENSMICG00000003776)	ZNF358 (ENSMICG00000011673)	TEX45 (ENSMICG00000003762)	PEX11G (ENSMICG00000013977)	ARHGEF18 (ENSMICG00000013937)	ENSMICG00000043600	ZNF699 (ENSMICG00000044283) #9	ZNF177 (ENSMICG00000004189) #11	ZNF266 (ENSMICG00000045643) #12	ZNF560 (ENSMICG00000033101) #13	ZNF121 (ENSMICG00000032248) #15	ZNF846 (ENSMICG00000033313) #18	FBXL12 (ENSMICG00000033575) #20	UBL5 (ENSMICG00000001992) #22	PIN1 (ENSMICG00000043503) #24	OLFM2 (ENSMICG00000002003) #25	COL5A3 (ENSMICG00000006871) #26	RDH8 (ENSMICG00000006911) #27	SHFL (ENSMICG00000029284) #29	ANGPTL6 (ENSMICG00000031653) #30	PPAN (ENSMICG00000047321) #31	P2RY11 (ENSMICG00000006915)	EIF3G (ENSMICG00000006936) #32	DNMT1 (ENSMICG00000010231) #33	S1PR2 (ENSMICG00000029506) #34	MRPL4 (ENSMICG00000010267) #35	ICAM1 (ENSMICG00000047282)	ICAM4 (ENSMICG00000010290)	ICAM5 (ENSMICG00000010301)
Lemuriformes_a	ANCESTRAL SPECIES	25	ENSGT00950000183036.b	ENSGT00940000162948	ENSGT00390000014215	ENSGT00390000000427	ENSGT00940000157375	ENSGT00940000154146.b.b.b	ENSGT00940000163210 #9	ENSGT00940000164004 #10	ENSGT00940000163463 #11	ENSGT00940000162380 #12	ENSGT00940000164683 #13	ENSGT00940000163292 #14	ENSGT00940000163151 #15	ENSGT00940000163958 #18	ENSGT00390000003354 #20	ENSGT00390000001945 #22	ENSGT00640000091578 #24	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00940000155412.b #27	ENSGT00940000164135 #28	ENSGT00390000005065 #29	ENSGT00940000160969 #30	ENSGT00530000064158 #31	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311	ENSGT00940000162431
Greater bamboo lemur	MODERN SPECIES	48												ZNF426 (ENSPSMG00000020871) #14	ENSPSMG00000020840	ZNF121 (ENSPSMG00000020833) #15	FBXL12 (ENSPSMG00000020827) #20	UBL5 (ENSPSMG00000020815) #22	PIN1 (ENSPSMG00000020808) #24	OLFM2 (ENSPSMG00000020782) #25	COL5A3 (ENSPSMG00000020745) #26	RDH8 (ENSPSMG00000020729) #27	ENSPSMG00000020692 #28	SHFL (ENSPSMG00000020508) #29	ANGPTL6 (ENSPSMG00000020500) #30	PPAN (ENSPSMG00000020489) #31	P2RY11 (ENSPSMG00000020479)	EIF3G (ENSPSMG00000020476) #32	DNMT1 (ENSPSMG00000020383) #33	S1PR2 (ENSPSMG00000020179) #34	MRPL4 (ENSPSMG00000020172) #35	ZNF627 (ENSPSMG00000020138)	ACP5 (ENSPSMG00000020134)
Coquerels sifaka	MODERN SPECIES	226	PNPLA6 (ENSPCOG00000019630)	MCOLN1 (ENSPCOG00000021666)	ZNF358 (ENSPCOG00000023627)	TEX45 (ENSPCOG00000003057)	PEX11G (ENSPCOG00000019916)	ARHGEF18 (ENSPCOG00000016256)	ENSPCOG00000024157	ZNF699 (ENSPCOG00000023928) #9	ENSPCOG00000016133 #10	ZNF266 (ENSPCOG00000020876) #12	ZNF560 (ENSPCOG00000015133) #13	ZNF426 (ENSPCOG00000022116) #14	ZNF121 (ENSPCOG00000020602) #15	ZNF846 (ENSPCOG00000023619) #18	FBXL12 (ENSPCOG00000013856) #20	UBL5 (ENSPCOG00000019050) #22	PIN1 (ENSPCOG00000017665) #24	OLFM2 (ENSPCOG00000014172) #25	COL5A3 (ENSPCOG00000025910) #26	RDH8 (ENSPCOG00000021964) #27	SHFL (ENSPCOG00000025048) #29	ANGPTL6 (ENSPCOG00000025263) #30	PPAN (ENSPCOG00000027096) #31	P2RY11 (ENSPCOG00000018623)	EIF3G (ENSPCOG00000022779) #32	DNMT1 (ENSPCOG00000018383) #33	MRPL4 (ENSPCOG00000016733) #35	ICAM1 (ENSPCOG00000020759)	ICAM4 (ENSPCOG00000024827)	ICAM5 (ENSPCOG00000028361)	ZGLP1 (ENSPCOG00000016482)
Euarchontoglires_A	ANCESTRAL SPECIES	20	ENSGT01090000260018.B.a.b	ENSGT00950000183005.b.c.b	ENSGT00940000160844.a	ENSGT00950000183005.b.c.a	ENSGT00440000039287	ENSGT00940000163044	ENSGT00940000154131	ENSGT00940000154619	ENSGT00940000162532	ENSGT00940000162241	ENSGT00940000163783	ENSGT00940000163151 #15	ENSGT00940000162380 #12	ENSGT00940000163292 #14	ENSGT00390000003354 #20	ENSGT00390000001945 #22	ENSGT00640000091578 #24	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00940000155412.b #27	ENSGT00940000164135 #28	ENSGT00390000005065 #29	ENSGT00940000160969 #30	ENSGT00530000064158 #31	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT00940000172524	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311
Glires	ANCESTRAL SPECIES	21	ENSGT00940000162241	ENSGT00940000163783	ENSGT00940000162877	ENSGT00940000153277.A.b.b.a ##8	ENSGT00940000153686 #7	ENSGT00940000153277.A.b.b.b.a ##8	ENSGT00940000156425	ENSGT00940000153277.A.b.a ##8	ENSGT00940000163210 #9	ENSGT00940000163463 #11	ENSGT00940000162380 #12	ENSGT00940000163151 #15	ENSGT00940000164232	ENSGT00940000163292 #14	ENSGT00390000003354 #20	ENSGT00390000001945 #22	ENSGT00640000091578 #24	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00940000155412.b #27	ENSGT00940000164135 #28	ENSGT00390000005065 #29	ENSGT00940000160969 #30	ENSGT00530000064158 #31	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT00940000172524	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311
Rodentia	ANCESTRAL SPECIES	17	ENSGT00940000163783	ENSGT00940000153686.`b.b.b #7	ENSGT00940000153277.A.b.b.a ##8	ENSGT00940000153686.`b.a #7	ENSGT00940000153277.A.b.a.b ##8	ENSGT00940000153686.`b.b.a #7	ENSGT00940000153277.A.b.a.a.a ##8	ENSGT00940000163210 #9	ENSGT00940000163463 #11	ENSGT00940000163151 #15	ENSGT00940000164232	ENSGT00940000163292.d #14	ENSGT00940000162380 #12	ENSGT00950000183169.B	ENSGT00390000003354 #20	ENSGT00390000001945 #22	ENSGT00640000091578 #24	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00940000155412.b #27	ENSGT00940000164135 #28	ENSGT00390000005065 #29	ENSGT00940000160969 #30	ENSGT00530000064158 #31	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT00940000172524	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311
Rodentia_A	ANCESTRAL SPECIES	16	ENSGT00940000162241	ENSGT00940000163783	ENSGT00940000153686.`b.b.b #7	ENSGT00940000156425	ENSGT00940000153277.A.b.a.b.a.a ##8	ENSGT00940000153686.`b.b.a #7	ENSGT00940000153277.A.b.a.a.a ##8	ENSGT00940000163210 #9	ENSGT00940000163463 #11	ENSGT00940000162380 #12	ENSGT00950000183169.B.f	ENSGT00940000163151.d #15	ENSGT00940000164232	ENSGT00940000163151.c #15	ENSGT00390000003354 #20	ENSGT00390000001945 #22	ENSGT00640000091578 #24	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00940000155412.b #27	ENSGT00940000164135 #28	ENSGT00390000005065 #29	ENSGT00940000160969 #30	ENSGT00530000064158 #31	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT00940000172524	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311
Sciuridae	DUPLICATION
Sciuridae	ANCESTRAL SPECIES	159																ENSGT00390000001945.e #22	ENSGT00960000189235
Marmotini	ANCESTRAL SPECIES	263																ENSGT00390000001945.e #22	ENSGT00960000189235
Alpin marmot	MODERN SPECIES	299																ENSMMMG00000008197 #22	ENSMMMG00000008180
Sciuridae	ANCESTRAL SPECIES	20								ENSGT00940000163210 #9	ENSGT00940000163463 #11	ENSGT00940000164232	ENSGT00940000162380 #12	ENSGT00940000163151.d #15	ENSGT01030000238001	ENSGT00940000163151.c #15	ENSGT00390000003354 #20	ENSGT00390000001945.f #22	ENSGT00640000091578 #24	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00940000165585	ENSGT00940000155412.b #27	ENSGT00940000164135 #28	ENSGT00390000005065 #29	ENSGT00940000160969 #30	ENSGT00530000064158 #31	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311
Eurasian red squirrel	MODERN SPECIES	7	ENSSVLG00005023110 ##8	ENSSVLG00005023132	ENSSVLG00005023145	ENSSVLG00005023188 #9	ZNF177 (ENSSVLG00005023232) #11	ENSSVLG00005016838	ENSSVLG00005016910	ENSSVLG00005016971 #14	ENSSVLG00005017030 #14	ENSSVLG00005017115	ENSSVLG00005017289	ENSSVLG00005017328	ENSSVLG00005017365 #18	ENSSVLG00005017383	FBXL12 (ENSSVLG00005017464) #20	UBL5 (ENSSVLG00005017569) #22	PIN1 (ENSSVLG00005017665) #24	OLFM2 (ENSSVLG00005017772) #25	RDH8 (ENSSVLG00005018552) #27	ENSSVLG00005018754 #28	SHFL (ENSSVLG00005019608) #29	ANGPTL6 (ENSSVLG00005019674) #30	PPAN (ENSSVLG00005019747) #31	P2RY11 (ENSSVLG00005019829)	EIF3G (ENSSVLG00005019867) #32	DNMT1 (ENSSVLG00005019922) #33	S1PR2 (ENSSVLG00005019959) #34	MRPL4 (ENSSVLG00005020006) #35	ICAM1 (ENSSVLG00005020131)	ICAM4 (ENSSVLG00005020213)	ICAM5 (ENSSVLG00005020255)
Marmotini	ANCESTRAL SPECIES	41										ENSGT00940000164232	ENSGT01030000238001	ENSGT00940000163151.d #15	ENSGT00940000162380 #12	ENSGT00940000163151.c #15	ENSGT00390000003354 #20	ENSGT00390000001945.f #22	ENSGT00640000091578 #24	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00940000165585	ENSGT00390000005065 #29	ENSGT00940000160969 #30	ENSGT00530000064158 #31	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311	ENSGT00940000162431	ENSGT00940000162184
Alpin marmot	MODERN SPECIES	24							ENSMMMG00000015466 #12	ENSMMMG00000015474 #15	ENSMMMG00000015479	ENSMMMG00000015485	ENSMMMG00000015489	ENSMMMG00000015501 #12	ENSMMMG00000015508 #15	ENSMMMG00000015621 #12	FBXL12 (ENSMMMG00000015655) #20	UBL5 (ENSMMMG00000015668) #22	PIN1 (ENSMMMG00000015677) #24	OLFM2 (ENSMMMG00000015681) #25	SHFL (ENSMMMG00000015812) #29	ANGPTL6 (ENSMMMG00000015819) #30	PPAN (ENSMMMG00000015833) #31	P2RY11 (ENSMMMG00000015865)	ENSMMMG00000015867 #32	DNMT1 (ENSMMMG00000015887) #33	S1PR2 (ENSMMMG00000017008) #34	MRPL4 (ENSMMMG00000017010) #35	ICAM1 (ENSMMMG00000017017)	ICAM4 (ENSMMMG00000017853)	ICAM5 (ENSMMMG00000017859)	ENSMMMG00000017874	FDX2 (ENSMMMG00000017878)
Marmotini_b	ANCESTRAL SPECIES	40										ENSGT00940000163463 #11	ENSGT00940000163151.d #15	ENSGT00940000164232	ENSGT00940000162380 #12	ENSGT00940000163151.c #15	ENSGT00390000003354 #20	ENSGT00390000001945.f #22	ENSGT00640000091578 #24	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00940000165585	ENSGT00390000005065 #29	ENSGT00940000160969 #30	ENSGT00530000064158 #31	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311	ENSGT00940000162431	ENSGT00940000162184
Squirrel	MODERN SPECIES	259								ZNF177 (ENSSTOG00000031518) #11	ENSSTOG00000033893 #15	ENSSTOG00000023536	ENSSTOG00000033735 #12	ENSSTOG00000030417 #12	ENSSTOG00000032983 #12	ENSSTOG00000033919 #15	FBXL12 (ENSSTOG00000005277) #20	UBL5 (ENSSTOG00000005286) #22	PIN1 (ENSSTOG00000005299) #24	OLFM2 (ENSSTOG00000005307) #25	COL5A3 (ENSSTOG00000015075) #26	ENSSTOG00000015104	SHFL (ENSSTOG00000026700) #29	ANGPTL6 (ENSSTOG00000028080) #30	PPAN (ENSSTOG00000010828) #31	P2RY11 (ENSSTOG00000010839)	EIF3G (ENSSTOG00000027655) #32	DNMT1 (ENSSTOG00000010841) #33	S1PR2 (ENSSTOG00000022687) #34	MRPL4 (ENSSTOG00000030121) #35	ICAM1 (ENSSTOG00000031629)	ICAM4 (ENSSTOG00000019729)	ICAM5 (ENSSTOG00000008181)
Arctic ground squirrel	MODERN SPECIES	217								ENSUPAG00010022258	ENSUPAG00010022265 #11	ENSUPAG00010022267 #15	ENSUPAG00010022270	ENSUPAG00010022282	ENSUPAG00010022422 #12	ENSUPAG00010022423 #12	FBXL12 (ENSUPAG00010022424) #20	UBL5 (ENSUPAG00010022426) #22	PIN1 (ENSUPAG00010022430) #24	OLFM2 (ENSUPAG00010022432) #25	ENSUPAG00010022438 #26	ENSUPAG00010000044	SHFL (ENSUPAG00010000069) #29	ANGPTL6 (ENSUPAG00010000091) #30	PPAN (ENSUPAG00010000094) #31	P2RY11 (ENSUPAG00010000138)	EIF3G (ENSUPAG00010000146) #32	DNMT1 (ENSUPAG00010000182) #33	S1PR2 (ENSUPAG00010000933) #34	MRPL4 (ENSUPAG00010000934) #35	ICAM1 (ENSUPAG00010000950)	ICAM4 (ENSUPAG00010000954)	ICAM5 (ENSUPAG00010000960)
Hystricomorpha	ANCESTRAL SPECIES	19	ENSGT00950000183005.b.c.b	ENSGT00940000160844.a	ENSGT00950000183005.b.c.a	ENSGT00940000163044	ENSGT00940000162241	ENSGT00940000153686.`b.b.a #7	ENSGT00940000153277.A.b.a.a.a ##8	ENSGT00940000163210.c #9	ENSGT00940000163463 #11	ENSGT00940000162380 #12	ENSGT00950000183169.B.f	ENSGT00940000163151.d #15	ENSGT00940000164232	ENSGT00940000163151.c #15	ENSGT00390000003354 #20	ENSGT00390000001945 #22	ENSGT00640000091578 #24	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00940000155412.b #27	ENSGT00390000005065 #29	ENSGT00940000160969 #30	ENSGT00530000064158 #31	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT00940000172524	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311	ENSGT00940000162431
Naked mole-rat female	MODERN SPECIES	21	ENSHGLG00000038616	ENSHGLG00000047792 #9	ENSHGLG00000046196 #11	ENSHGLG00000012460 #12	ENSHGLG00000019054 #15	ENSHGLG00000005362	ENSHGLG00000031977	ENSHGLG00000009845 #14	ENSHGLG00000036574 #12	ENSHGLG00000044180 #12	ENSHGLG00000038312 #14	ENSHGLG00000032352	ENSHGLG00000040640	ENSHGLG00000041050	ENSHGLG00000046307	ENSHGLG00000044009 #22	FBXL12 (ENSHGLG00000007695) #20	PIN1 (ENSHGLG00000050268) #24	OLFM2 (ENSHGLG00000005597) #25	COL5A3 (ENSHGLG00000008192) #26	RDH8 (ENSHGLG00000035579) #27	ENSHGLG00000044492	SHFL (ENSHGLG00000018950) #29	ANGPTL6 (ENSHGLG00000005437) #30	PPAN (ENSHGLG00000006964) #31	P2RY11 (ENSHGLG00000042365)	EIF3G (ENSHGLG00000009901) #32	DNMT1 (ENSHGLG00000018262) #33	ENSHGLG00000037635	MRPL4 (ENSHGLG00000007839) #35	S1PR2 (ENSHGLG00000041926) #34
Hystricomorpha_a	ANCESTRAL SPECIES	15					ENSGT00940000163044	ENSGT00940000162241	ENSGT00940000153686.`b.b.a #7	ENSGT00940000153277.A.b.a.a.a ##8	ENSGT00940000163210.c #9	ENSGT00940000163151.d #15	ENSGT00940000164232	ENSGT00940000162380 #12	ENSGT00950000183169.B.f	ENSGT00940000163151.c #15	ENSGT00390000003354 #20	ENSGT00390000001945 #22	ENSGT00640000091578 #24	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00940000155412.b #27	ENSGT00390000005065 #29	ENSGT00940000160969 #30	ENSGT00530000064158 #31	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311	ENSGT00940000162431	ENSGT00940000162184	ENSGT00470000042444
Guinea pig	MODERN SPECIES	172	ENSCPOG00000038639 ##8	ENSCPOG00000009673 #7	ENSCPOG00000032931	ENSCPOG00000040694 ##8	ENSCPOG00000003013 #7	ENSCPOG00000031001 ##8	ENSCPOG00000036661 ##8	ENSCPOG00000036355	ENSCPOG00000036986	ENSCPOG00000032445	ENSCPOG00000031475	ENSCPOG00000006662 ##8	ENSCPOG00000030371	ENSCPOG00000038099 #15	FBXL12 (ENSCPOG00000031097) #20	UBL5 (ENSCPOG00000040527) #22	PIN1 (ENSCPOG00000021671) #24	OLFM2 (ENSCPOG00000025030) #25
Hystricomorpha_b	ANCESTRAL SPECIES	17									ENSGT00940000163044	ENSGT00940000162241	ENSGT00940000153277.A.b.a.b.b ##8	ENSGT00940000164232	ENSGT00950000183169.B.f	ENSGT00940000162380 #12	ENSGT00390000003354 #20	ENSGT00390000001945 #22	ENSGT00640000091578 #24	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00940000155412.b #27	ENSGT00390000005065 #29	ENSGT00940000160969 #30	ENSGT00530000064158 #31	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311	ENSGT00940000162431	ENSGT00940000162184	ENSGT00470000042444
Long-tailed chinchilla	MODERN SPECIES	202					OR1M1 (ENSCLAG00000017321)	ZNF317 (ENSCLAG00000013328)	ENSCLAG00000014801 #7	ENSCLAG00000006814 ##8	ZNF699 (ENSCLAG00000013129) #9	ENSCLAG00000012556	ENSCLAG00000013451	ENSCLAG00000007380 #12	ENSCLAG00000009897	ENSCLAG00000014448	FBXL12 (ENSCLAG00000007941) #20	UBL5 (ENSCLAG00000009157) #22	PIN1 (ENSCLAG00000010041) #24	OLFM2 (ENSCLAG00000010808) #25	ENSCLAG00000006705	RDH8 (ENSCLAG00000008572) #27	SHFL (ENSCLAG00000007234) #29	ANGPTL6 (ENSCLAG00000008492) #30	PPAN (ENSCLAG00000009362) #31	EIF3G (ENSCLAG00000007381) #32	DNMT1 (ENSCLAG00000009575) #33	S1PR2 (ENSCLAG00000017915) #34	MRPL4 (ENSCLAG00000004552) #35	ICAM1 (ENSCLAG00000005350)	ICAM4 (ENSCLAG00000006269)	ICAM5 (ENSCLAG00000004832)	ZGLP1 (ENSCLAG00000006578)
Degu	MODERN SPECIES	91	ENSODEG00000017111 ##8	ENSODEG00000020461	ENSODEG00000016810 ##8	ENSODEG00000016729 ##8	ENSODEG00000017217	ENSODEG00000016481 #7	ENSODEG00000016968	ENSODEG00000017052 ##8	ENSODEG00000016813	ENSODEG00000017047 #15	ENSODEG00000020442	ENSODEG00000016460	ENSODEG00000016654 #12	ENSODEG00000016706 #12	FBXL12 (ENSODEG00000016590) #20	UBL5 (ENSODEG00000016745) #22	ENSODEG00000017428 #24	OLFM2 (ENSODEG00000016646) #25	COL5A3 (ENSODEG00000016907) #26	RDH8 (ENSODEG00000016686) #27	SHFL (ENSODEG00000016467) #29	ANGPTL6 (ENSODEG00000016263) #30	PPAN (ENSODEG00000016743) #31	ENSODEG00000016542 #32	DNMT1 (ENSODEG00000016929) #33	S1PR2 (ENSODEG00000020460) #34	MRPL4 (ENSODEG00000016194) #35	ICAM1 (ENSODEG00000016545)	ICAM4 (ENSODEG00000016513)	ICAM5 (ENSODEG00000016352)	ENSODEG00000016522
Rodentia_B	ANCESTRAL SPECIES	42				ENSGT00940000154131.e.a.b.a.a.a.b	ENSGT00940000154619.e	ENSGT00940000154131.e.a.b.a.a.a.a	ENSGT00940000153277.A.b.b.a.a.b ##8	ENSGT00940000162877	ENSGT00940000153686.`b.b.a #7	ENSGT00940000153686.`b.b.b #7	ENSGT00940000153277.A.b.b.a.a.a ##8	ENSGT00940000163292.d #14	ENSGT00940000162380 #12	ENSGT00950000183169.B	ENSGT00390000003354 #20	ENSGT00390000001945 #22	ENSGT00640000091578 #24	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00940000155412.b #27	ENSGT00390000005065 #29	ENSGT00940000160969 #30	ENSGT01030000234518.C.a.a	ENSGT00530000064158 #31	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311	ENSGT00940000162431	ENSGT00940000162184
Kangaroo rat	MODERN SPECIES	498										Or7e178 (ENSDORG00000030124) ##8	ENSDORG00000000170 #7	Zfp26 (ENSDORG00000027564)	Zfp266 (ENSDORG00000023837) #12	ENSDORG00000026036	Fbxl12 (ENSDORG00000023371) #20	ENSDORG00000006499 #22	Pin1rt1 (ENSDORG00000006498) #24	Olfm2 (ENSDORG00000006497) #25	Col5a3 (ENSDORG00000014029) #26	Rdh8 (ENSDORG00000014042) #27	ENSDORG00000026660 #29	ENSDORG00000029931 #30	Ppan (ENSDORG00000003829) #31	Eif3g (ENSDORG00000003833) #32	Dnmt1 (ENSDORG00000014116) #33	S1pr2 (ENSDORG00000012785) #34	Mrpl4 (ENSDORG00000003723) #35	Icam1 (ENSDORG00000006170)	Icam4 (ENSDORG00000006167)	ENSDORG00000024999	Fdx2 (ENSDORG00000010108)
Myomorpha	ANCESTRAL SPECIES	51				ENSGT00940000154131.e.a.b.a.a.a.b	ENSGT00940000154619.e	ENSGT00940000154131.e.a.b.a.a.a.a	ENSGT00940000153277.A.b.b.a.a.b ##8	ENSGT00940000162877	ENSGT00940000153686.`b.b.a #7	ENSGT00940000153686.`b.b.b #7	ENSGT00940000153277.A.b.b.a.a.a ##8	ENSGT00940000163292.d #14	ENSGT00940000162380 #12	ENSGT00950000183169.B	ENSGT00390000003354 #20	ENSGT00390000001945 #22	ENSGT00640000091578 #24	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00940000155412.b #27	ENSGT00390000005065 #29	ENSGT00940000160969 #30	ENSGT01030000234518.C.a.a	ENSGT00530000064158 #31	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311	ENSGT00940000162431	ENSGT00940000162184
Muroidea	ANCESTRAL SPECIES	58		ENSGT00940000154131.e.b	ENSGT00940000154619.f	ENSGT00940000163945	ENSGT00940000154131.e.a.a	ENSGT00940000162532	ENSGT00940000154619.e.c.a	ENSGT00940000154131.e.a.b.a.a.a.a	ENSGT00940000162241	ENSGT00940000163783	ENSGT00940000164232	ENSGT00940000163292.d #14	ENSGT00940000162380 #12	ENSGT00950000183169.B	ENSGT00390000003354 #20	ENSGT00390000001945 #22	ENSGT00640000091578 #24	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00940000155412.b #27	ENSGT00390000005065 #29	ENSGT00940000160969 #30	ENSGT01030000234518.C.a.a	ENSGT00530000064158 #31	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311	ENSGT00940000162431	ENSGT00940000162184
Upper Galilee mountains blind mole rat	MODERN SPECIES	836								ENSNGAG00000020739 ##8	ENSNGAG00000001921 #9	Zfp560 (ENSNGAG00000015897) #15	Zfp26 (ENSNGAG00000020695)	Zfp426 (ENSNGAG00000008341) #14	Zfp266 (ENSNGAG00000018635) #12	Zfp846 (ENSNGAG00000003315)	Fbxl12 (ENSNGAG00000004623) #20	ENSNGAG00000011465 #22	Pin1 (ENSNGAG00000016256) #24	Olfm2 (ENSNGAG00000017425) #25	Col5a3 (ENSNGAG00000010112) #26	Rdh8 (ENSNGAG00000013222) #27
Muroidea_A	ANCESTRAL SPECIES	23	ENSGT00940000153277.A.b.b.a.a.b ##8	ENSGT00940000153686.`b.b.a #7	ENSGT00940000153686.`b.b.b #7	ENSGT00940000153277.A.b.b.a.a.a ##8	ENSGT00940000153277.A.b.a.b.c.a ##8	ENSGT00940000153686.`b.a #7	ENSGT00940000153277.A.b.a.b.c.b ##8	ENSGT00940000153277.B ##8	ENSGT00940000163651	ENSGT00940000163151 #15	ENSGT00940000164232	ENSGT00940000163292.d #14	ENSGT00940000162380 #12	ENSGT00950000183169.B	ENSGT00390000003354 #20	ENSGT00390000001945 #22	ENSGT00640000091578 #24	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00940000155412.b #27	ENSGT00390000005065 #29	ENSGT00940000160969 #30	ENSGT01030000234518.C.a.a	ENSGT00530000064158 #31	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311	ENSGT00940000162431	ENSGT00940000162184
Cricetidae	ANCESTRAL SPECIES	4	ENSGT00940000153686.`b.b.b #7	ENSGT00940000153686.`b.b.a #7	ENSGT00940000153277.A.b.b.a.a.b ##8	ENSGT00940000153277.A.b.b.a.a.a ##8	ENSGT00940000153277.A.b.a.b.c.a ##8	ENSGT00940000153686.`b.a #7	ENSGT00940000153277.A.b.a.b.c.b ##8	ENSGT00940000153277.B.d ##8	ENSGT00940000163651	ENSGT00940000163151 #15	ENSGT00940000164232	ENSGT00940000163292.d #14	ENSGT00940000162380 #12	ENSGT00950000183169.B	ENSGT00390000003354 #20	ENSGT00390000001945 #22	ENSGT00640000091578 #24	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00940000155412.b #27	ENSGT00390000005065 #29	ENSGT00940000160969 #30	ENSGT01030000234518.C.a.a	ENSGT00530000064158 #31	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311	ENSGT00940000162431	ENSGT00940000162184
Cricetinae	ANCESTRAL SPECIES	30	ENSGT00940000153277.A.b.b.a.a.b ##8	ENSGT00940000153277.A.b.b.a.a.a ##8	ENSGT00940000153277.A.b.a.b.c.a ##8	ENSGT00940000153686.`b.a #7	ENSGT00940000153277.A.b.a.b.c.b ##8	ENSGT00940000153277.B.d ##8	ENSGT00940000163651	ENSGT00940000163151 #15	ENSGT00940000164232	ENSGT00940000163292.d #14	ENSGT00940000162380 #12	ENSGT00950000183169.B	ENSGT00390000003354 #20	ENSGT01040000244683	ENSGT00990000205479	ENSGT00390000001945 #22	ENSGT00640000091578 #24	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00940000155412.b #27	ENSGT00390000005065 #29	ENSGT00940000160969 #30	ENSGT00530000064158 #31	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311	ENSGT00940000162431	ENSGT00940000162184	ENSGT00470000042444
Golden Hamster	MODERN SPECIES	700										Zfp560 (ENSMAUG00000007433) #15	Zfp26 (ENSMAUG00000017074)	Zfp426 (ENSMAUG00000010146) #14	Zfp266 (ENSMAUG00000000253) #12	Zfp846 (ENSMAUG00000020295)	ENSMAUG00000002861	Ubl5 (ENSMAUG00000000997) #22	Pin1 (ENSMAUG00000000464) #24	Olfm2 (ENSMAUG00000006786) #25	Col5a3 (ENSMAUG00000006118) #26	ENSMAUG00000019806	Shfl (ENSMAUG00000017892) #29	Angptl6 (ENSMAUG00000005463) #30	Ppan (ENSMAUG00000000310) #31	Eif3g (ENSMAUG00000003373) #32	Dnmt1 (ENSMAUG00000019579) #33	S1pr2 (ENSMAUG00000016946) #34	Mrpl4 (ENSMAUG00000013451) #35	Icam1 (ENSMAUG00000006369)	Icam4 (ENSMAUG00000002833)	Icam5 (ENSMAUG00000001262)	Zglp1 (ENSMAUG00000000170)
Cricetidae_B	ANCESTRAL SPECIES	16	ENSGT00940000162241	ENSGT00940000163783	ENSGT00940000162877.f	ENSGT00940000153686.`b.b.b #7	ENSGT00940000153277.A.b.a.b.c.a ##8	ENSGT00940000153686.`b.a #7	ENSGT00940000153277.A.b.a.b.c.b ##8	ENSGT00940000153277.B.d ##8	ENSGT00940000163651	ENSGT00940000163151 #15	ENSGT00940000164232	ENSGT00940000163292.d #14	ENSGT00940000162380 #12	ENSGT00950000183169.B	ENSGT00390000003354 #20	ENSGT00390000001945 #22	ENSGT00640000091578 #24	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00940000155412.b #27	ENSGT00390000005065 #29	ENSGT00940000160969 #30	ENSGT01030000234518.C.a.a	ENSGT00530000064158 #31	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311	ENSGT00940000162431	ENSGT00940000162184
Northern American deer mouse	DUPLICATION
Northern American deer mouse	MODERN SPECIES	14	ENSPEMG00000019039	Hs1bp3 (ENSPEMG00000001400)	Rhob (ENSPEMG00000013485)	Slc7a15 (ENSPEMG00000009942)	Pum2 (ENSPEMG00000008357)	ENSPEMG00000024635	Sdc1 (ENSPEMG00000010998)	Laptm4a (ENSPEMG00000015789)	Matn3 (ENSPEMG00000017106)	Wdr35 (ENSPEMG00000004790)	Ttc32 (ENSPEMG00000027871)	Osr1 (ENSPEMG00000008344)	Nt5c1b (ENSPEMG00000013187)	Rdh14 (ENSPEMG00000018416)	ENSPEMG00000000184	ENSPEMG00000025389 #22	Kcns3 (ENSPEMG00000011462)	ENSPEMG00000007987	Msgn1 (ENSPEMG00000007522)	Gen1 (ENSPEMG00000001855)	ENSPEMG00000024461	Vsnl1 (ENSPEMG00000028838)	ENSPEMG00000027568	Cyria (ENSPEMG00000025578)	Mycn (ENSPEMG00000014767)	ENSPEMG00000027724	Ddx1 (ENSPEMG00000016389)	Nbas (ENSPEMG00000000126)	Lratd1 (ENSPEMG00000027364)	ENSPEMG00000030202	Trib2 (ENSPEMG00000027972)
Northern American deer mouse	MODERN SPECIES	22	Cacna2d3 (ENSPEMG00000014967)	Wnt5a (ENSPEMG00000030305)	Erc2 (ENSPEMG00000007673)	ENSPEMG00000030335	Ccdc66 (ENSPEMG00000000420)	Tasor (ENSPEMG00000023750)	ENSPEMG00000028020	Arhgef3 (ENSPEMG00000008054)	Il17rd (ENSPEMG00000010551)	Hesx1 (ENSPEMG00000025118)	Appl1 (ENSPEMG00000010024)	Asb14 (ENSPEMG00000008349)	Dnah12 (ENSPEMG00000023606)	Pde12 (ENSPEMG00000007259)	Arf4 (ENSPEMG00000012609)	ENSPEMG00000028915 #22	Dennd6a (ENSPEMG00000023698)	Slmap (ENSPEMG00000016271)	ENSPEMG00000026354	ENSPEMG00000025649	Colq (ENSPEMG00000014122)	Hacl1 (ENSPEMG00000024908)	Btd (ENSPEMG00000014118)	ENSPEMG00000030131	ENSPEMG00000014981	Galnt15 (ENSPEMG00000008935)	ENSPEMG00000030669	Flnb (ENSPEMG00000003413)	Dnase1l3 (ENSPEMG00000010743)	Abhd6 (ENSPEMG00000014877)	ENSPEMG00000029189
Northern American deer mouse	MODERN SPECIES	20	Or7d11 (ENSPEMG00000008424) #7	ENSPEMG00000010414	ENSPEMG00000029897 ##8	ENSPEMG00000030392 #7	Or7e177 (ENSPEMG00000027236) ##8	Or7e178 (ENSPEMG00000024659) ##8	ENSPEMG00000000647	ENSPEMG00000030281 #15	ENSPEMG00000029248	ENSPEMG00000024432 #12	Zfp26 (ENSPEMG00000016507)	Zfp426 (ENSPEMG00000011985) #14	Zfp266 (ENSPEMG00000014715) #12	Zfp846 (ENSPEMG00000029414)	Fbxl12 (ENSPEMG00000005521) #20	ENSPEMG00000018867 #22	Pin1 (ENSPEMG00000002291) #24	Olfm2 (ENSPEMG00000005546) #25	Col5a3 (ENSPEMG00000015543) #26	Rdh8 (ENSPEMG00000015325) #27	Shfl (ENSPEMG00000013975) #29	Angptl6 (ENSPEMG00000010885) #30	ENSPEMG00000029942	Ppan (ENSPEMG00000015393) #31	Eif3g (ENSPEMG00000001978) #32	ENSPEMG00000004880 #33	S1pr2 (ENSPEMG00000030885) #34	Mrpl4 (ENSPEMG00000017474) #35	Icam1 (ENSPEMG00000024025)	Icam4 (ENSPEMG00000023979)	Icam5 (ENSPEMG00000008387)
Prairie vole	DUPLICATION
Prairie vole	MODERN SPECIES	1	Lrrc38 (ENSMOCG00000014237)	ENSMOCG00000016039	Gpr82 (ENSMOCG00000003874)	Gpr34 (ENSMOCG00000016433)	Cask (ENSMOCG00000007637)	Nyx (ENSMOCG00000018188)	Ddx3x (ENSMOCG00000014170)	ENSMOCG00000008046	Usp9x (ENSMOCG00000009609)	E330021D16Rik (ENSMOCG00000006042)	ENSMOCG00000005802	ENSMOCG00000016742	ENSMOCG00000016696	1810030O07Rik (ENSMOCG00000009974)	Atp6ap2 (ENSMOCG00000010803)	ENSMOCG00000009697 #22	ENSMOCG00000021841	ENSMOCG00000021216	ENSMOCG00000010154	ENSMOCG00000007720	Mid1ip1 (ENSMOCG00000009515)	Tspan7 (ENSMOCG00000021984)	Otc (ENSMOCG00000020681)	Rpgr (ENSMOCG00000015129)	Srpx (ENSMOCG00000000503)	Sytl5 (ENSMOCG00000020078)	Dynlt3 (ENSMOCG00000013937)	ENSMOCG00000005328	ENSMOCG00000002347	Xk (ENSMOCG00000021048)	Lancl3 (ENSMOCG00000018888)
Prairie vole	MODERN SPECIES	224																ENSMOCG00000016048 #22	ENSMOCG00000014934	ENSMOCG00000011850
Prairie vole	MODERN SPECIES	81	Ell3 (ENSMOCG00000018455)	ENSMOCG00000002326	Serinc4 (ENSMOCG00000014793)	ENSMOCG00000020172	ENSMOCG00000022884	Wdr76 (ENSMOCG00000013761)	Frmd5 (ENSMOCG00000020852)	Golm2 (ENSMOCG00000013300)	Ctdspl2 (ENSMOCG00000013493)	ENSMOCG00000022505	Spg11 (ENSMOCG00000010865)	Patl2 (ENSMOCG00000015367)	B2m (ENSMOCG00000000289)	Trim69 (ENSMOCG00000008858)	Terb2 (ENSMOCG00000015731)	ENSMOCG00000008799 #22	Sord (ENSMOCG00000020086)	Duox2 (ENSMOCG00000019172)	Duoxa2 (ENSMOCG00000017053)	Duoxa1 (ENSMOCG00000002434)	Duox1 (ENSMOCG00000017608)	Shf (ENSMOCG00000007839)	ENSMOCG00000007140	Gatm (ENSMOCG00000013911)	Spata5l1 (ENSMOCG00000018887)	AA467197 (ENSMOCG00000011759)	Slc30a4 (ENSMOCG00000001105)	Bloc1s6 (ENSMOCG00000011404)	ENSMOCG00000019232	ENSMOCG00000022725	Sema6d (ENSMOCG00000022881)
Prairie vole	MODERN SPECIES	13	ENSMOCG00000012110	ENSMOCG00000019115 ##8	Or7d9 (ENSMOCG00000000337) #7	ENSMOCG00000005283	Zfp317 (ENSMOCG00000000804)	Uxt (ENSMOCG00000021659)	Or7e178 (ENSMOCG00000002045) ##8	ENSMOCG00000004563	Zfp560 (ENSMOCG00000007908) #15	Zfp26 (ENSMOCG00000015724)	ENSMOCG00000017928	Zfp426 (ENSMOCG00000019624) #14	Zfp266 (ENSMOCG00000010485) #12	Zfp846 (ENSMOCG00000015338)	Fbxl12 (ENSMOCG00000020422) #20	ENSMOCG00000005061 #22	ENSMOCG00000019478	Pin1 (ENSMOCG00000004258) #24	Olfm2 (ENSMOCG00000007618) #25	Col5a3 (ENSMOCG00000004687) #26	Rdh8 (ENSMOCG00000004899) #27	Shfl (ENSMOCG00000012138) #29	Angptl6 (ENSMOCG00000012813) #30	Ppan (ENSMOCG00000016402) #31	ENSMOCG00000016861 #32	Dnmt1 (ENSMOCG00000013903) #33	S1pr2 (ENSMOCG00000013385) #34	Mrpl4 (ENSMOCG00000014755) #35	Icam1 (ENSMOCG00000013230)	ENSMOCG00000013950	Icam4 (ENSMOCG00000019163)
Murinae	ANCESTRAL SPECIES	3	ENSGT00940000153686.`b.b.a #7	ENSGT00940000153277.A.b.b.a.a.b ##8	ENSGT00940000153686.`b.b.b #7	ENSGT00940000153277.A.b.b.a.a.a ##8	ENSGT00940000153277.A.b.a.b.c.a ##8	ENSGT00940000153686.`b.a #7	ENSGT00940000153277.A.b.a.b.c.b ##8	ENSGT00940000153277.B ##8	ENSGT00940000163651	ENSGT00940000163151 #15	ENSGT00940000164232	ENSGT00940000163292.d #14	ENSGT00940000162380 #12	ENSGT00950000183169.B	ENSGT00390000003354 #20	ENSGT00390000001945 #22	ENSGT00640000091578 #24	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00940000155412.b #27	ENSGT00390000005065 #29	ENSGT00940000160969 #30	ENSGT00530000064158 #31	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311	ENSGT00940000162431	ENSGT00940000162184	ENSGT00470000042444
Mus	ANCESTRAL SPECIES	4	ENSGT00940000162877.c.a	ENSGT00940000153686.`b.b.a #7	ENSGT00940000153277.A.b.b.a.a.b ##8	ENSGT00940000153686.`b.b.b #7	ENSGT00940000153277.A.b.b.a.a.a ##8	ENSGT00940000153277.A.b.a.b.c.a ##8	ENSGT00940000153686.`b.a #7	ENSGT00940000153277.A.b.a.b.c.b ##8	ENSGT00940000153277.B ##8	ENSGT00940000163151 #15	ENSGT00940000164232	ENSGT00940000163292.d #14	ENSGT00940000162380 #12	ENSGT00950000183169.B	ENSGT00390000003354 #20	ENSGT00390000001945 #22	ENSGT00640000091578 #24	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00940000155412.b #27	ENSGT00390000005065 #29	ENSGT00940000160969 #30	ENSGT00530000064158 #31	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311	ENSGT00940000162431	ENSGT00940000162184	ENSGT00470000042444
Shrew mouse	MODERN SPECIES	1	Zfp317 (MGP_PahariEiJ_G0014694)	MGP_PahariEiJ_G0014695	Or7e170 (MGP_PahariEiJ_G0014696)	Or7d10 (MGP_PahariEiJ_G0014697) #7	Or7e174 (MGP_PahariEiJ_G0014698) ##8	MGP_PahariEiJ_G0014699 ##8	MGP_PahariEiJ_G0014700 ##8	Or7e177 (MGP_PahariEiJ_G0014701) ##8	Or7e178 (MGP_PahariEiJ_G0014702) ##8	MGP_PahariEiJ_G0014703 #15	MGP_PahariEiJ_G0014704	Zfp426 (MGP_PahariEiJ_G0014705) #14	Zfp266 (MGP_PahariEiJ_G0014706) #12	Zfp846 (MGP_PahariEiJ_G0014707)	Fbxl12 (MGP_PahariEiJ_G0014708) #20	MGP_PahariEiJ_G0014709 #22	Pin1 (MGP_PahariEiJ_G0014710) #24	Olfm2 (MGP_PahariEiJ_G0014711) #25	Col5a3 (MGP_PahariEiJ_G0014712) #26	Rdh8 (MGP_PahariEiJ_G0014713) #27	Shfl (MGP_PahariEiJ_G0014714) #29	Angptl6 (MGP_PahariEiJ_G0014715) #30	Ppan (MGP_PahariEiJ_G0014716) #31	Eif3g (MGP_PahariEiJ_G0014717) #32	Dnmt1 (MGP_PahariEiJ_G0014718) #33	S1pr2 (MGP_PahariEiJ_G0014719) #34	Mrpl4 (MGP_PahariEiJ_G0014720) #35	Icam1 (MGP_PahariEiJ_G0014721)	Icam4 (MGP_PahariEiJ_G0014722)	Icam5 (MGP_PahariEiJ_G0014723)	Zglp1 (MGP_PahariEiJ_G0014724)
Mus_A	ANCESTRAL SPECIES	4	ENSGT00940000153277.A.b.b.a.a.b ##8	ENSGT00940000153686.`b.b.b #7	ENSGT00940000153277.A.b.b.a.a.a ##8	ENSGT00940000153277.A.b.a.b.c.a.a ##8	ENSGT00940000163651	ENSGT00940000153277.A.b.a.b.c.a.b ##8	ENSGT00940000153686.`b.a #7	ENSGT00940000153277.A.b.a.b.c.b ##8	ENSGT00940000153277.B ##8	ENSGT00940000163151 #15	ENSGT00940000164232	ENSGT00940000163292.d #14	ENSGT00940000162380 #12	ENSGT00950000183169.B	ENSGT00390000003354 #20	ENSGT00390000001945 #22	ENSGT00640000091578 #24	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00940000155412.b #27	ENSGT00390000005065 #29	ENSGT00940000160969 #30	ENSGT00530000064158 #31	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311	ENSGT00940000162431	ENSGT00940000162184	ENSGT00470000042444
Ryukyu mouse	MODERN SPECIES	3	Zc3h14 (MGP_CAROLIEiJ_G0018012)	Ptpn21 (MGP_CAROLIEiJ_G0018011)	Spata7 (MGP_CAROLIEiJ_G0018010)	Kcnk10 (MGP_CAROLIEiJ_G0018009)	Gpr65 (MGP_CAROLIEiJ_G0018008)	Galc (MGP_CAROLIEiJ_G0018007)	Flrt2 (MGP_CAROLIEiJ_G0018006)	Sel1l (MGP_CAROLIEiJ_G0018005)	Ston2 (MGP_CAROLIEiJ_G0018004)	Gtf2a1 (MGP_CAROLIEiJ_G0018003)	Tshr (MGP_CAROLIEiJ_G0018002)	Cep128 (MGP_CAROLIEiJ_G0018001)	MGP_CAROLIEiJ_G0018000	Nrxn3 (MGP_CAROLIEiJ_G0017999)	Adck1 (MGP_CAROLIEiJ_G0017998)	MGP_CAROLIEiJ_G0017997 #22	Snw1 (MGP_CAROLIEiJ_G0017996)	Slirp (MGP_CAROLIEiJ_G0017995)	Sptlc2 (MGP_CAROLIEiJ_G0017993)	Ism2 (MGP_CAROLIEiJ_G0017992)	Ahsa1 (MGP_CAROLIEiJ_G0017991)	Vipas39 (MGP_CAROLIEiJ_G0017990)	Noxred1 (MGP_CAROLIEiJ_G0017989)	Samd15 (MGP_CAROLIEiJ_G0017988)	Tmed8 (MGP_CAROLIEiJ_G0017987)	Gstz1 (MGP_CAROLIEiJ_G0017986)	Pomt2 (MGP_CAROLIEiJ_G0017985)	Ngb (MGP_CAROLIEiJ_G0017984)	Tmem63c (MGP_CAROLIEiJ_G0017983)	Zdhhc22 (MGP_CAROLIEiJ_G0017982)	Cipc (MGP_CAROLIEiJ_G0017981)
Mus_B	ANCESTRAL SPECIES	3	ENSGT00940000153277.A.b.b.a.a.b ##8	ENSGT00940000153686.`b.b.b #7	ENSGT00940000153277.A.b.b.a.a.a ##8	ENSGT00940000153277.A.b.a.b.c.a.a ##8	ENSGT00940000163651.d	ENSGT00940000153277.A.b.a.b.c.a.b ##8	ENSGT00940000153686.`b.a #7	ENSGT00940000153277.A.b.a.b.c.b ##8	ENSGT00940000153277.B ##8	ENSGT00940000163151 #15	ENSGT00940000164232	ENSGT00940000163292.d #14	ENSGT00940000162380 #12	ENSGT00950000183169.B	ENSGT00390000003354 #20	ENSGT00390000001945 #22	ENSGT00640000091578 #24	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00940000155412.b #27	ENSGT00390000005065 #29	ENSGT00940000160969 #30	ENSGT00530000064158 #31	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311	ENSGT00940000162431	ENSGT00940000162184	ENSGT00470000042444
Mus_C	ANCESTRAL SPECIES	8	ENSGT00940000153277.A.b.b.a.a.b ##8	ENSGT00940000153686.`b.b.b #7	ENSGT00940000153277.A.b.b.a.a.a ##8	ENSGT00940000153277.A.b.a.b.c.a.a ##8	ENSGT00940000163651.d	ENSGT00940000153277.A.b.a.b.c.a.b ##8	ENSGT00940000153686.`b.a #7	ENSGT00940000153277.A.b.a.b.c.b ##8	ENSGT00940000153277.B ##8	ENSGT00940000163151 #15	ENSGT00940000164232	ENSGT00940000163292.d #14	ENSGT00940000162380 #12	ENSGT00940000163292.c.a #14	ENSGT00390000003354 #20	ENSGT00390000001945 #22	ENSGT00640000091578 #24	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00940000155412.b #27	ENSGT00390000005065 #29	ENSGT00940000160969 #30	ENSGT00530000064158 #31	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311	ENSGT00940000162431	ENSGT00940000162184	ENSGT00470000042444
spretus	MODERN SPECIES	18	Or7d10 (MGP_SPRETEiJ_G0032952) #7	Or7e173 (MGP_SPRETEiJ_G0032953) ##8	Or7d11 (MGP_SPRETEiJ_G0032954) #7	Or7e174 (MGP_SPRETEiJ_G0032955) ##8	MGP_SPRETEiJ_G0032956 ##8	Or7e176 (MGP_SPRETEiJ_G0032957) ##8	Or7d9 (MGP_SPRETEiJ_G0032958) #7	Or7e177 (MGP_SPRETEiJ_G0032959) ##8	Or7e178 (MGP_SPRETEiJ_G0032960) ##8	Zfp560 (MGP_SPRETEiJ_G0032961) #15	Zfp26 (MGP_SPRETEiJ_G0032962)	Zfp426 (MGP_SPRETEiJ_G0032963) #14	Zfp266 (MGP_SPRETEiJ_G0032964) #12	MGP_SPRETEiJ_G0032965 #14	Fbxl12 (MGP_SPRETEiJ_G0032966) #20	Ubl5 (MGP_SPRETEiJ_G0032967) #22	Pin1 (MGP_SPRETEiJ_G0032968) #24	Olfm2 (MGP_SPRETEiJ_G0032969) #25	Col5a3 (MGP_SPRETEiJ_G0032970) #26	Rdh8 (MGP_SPRETEiJ_G0032971) #27	Shfl (MGP_SPRETEiJ_G0032972) #29	Angptl6 (MGP_SPRETEiJ_G0032973) #30	Ppan (MGP_SPRETEiJ_G0032974) #31	Eif3g (MGP_SPRETEiJ_G0032975) #32	Dnmt1 (MGP_SPRETEiJ_G0032976) #33	S1pr2 (MGP_SPRETEiJ_G0032977) #34	Mrpl4 (MGP_SPRETEiJ_G0032978) #35	Icam1 (MGP_SPRETEiJ_G0032979)	Icam4 (MGP_SPRETEiJ_G0032980)	Icam5 (MGP_SPRETEiJ_G0032981)	Zglp1 (MGP_SPRETEiJ_G0032982)
Steppe mouse	DUPLICATION
Steppe mouse	MODERN SPECIES	3115					Or7e176 (ENSMSIG00000018169) ##8	Or7d9 (ENSMSIG00000018161) #7	Or7e177 (ENSMSIG00000018139) ##8	Or7e178 (ENSMSIG00000018136) ##8	Zfp560 (ENSMSIG00000018126) #15	Zfp26 (ENSMSIG00000018099)	Zfp426 (ENSMSIG00000017986) #14	Zfp266 (ENSMSIG00000017958) #12	ENSMSIG00000017949 ##23	ENSMSIG00000017921	Fbxl12 (ENSMSIG00000017903) #20	Ubl5 (ENSMSIG00000017855) #22	Pin1 (ENSMSIG00000017849) #24	Olfm2 (ENSMSIG00000017812) #25	Col5a3 (ENSMSIG00000017680) #26	Rdh8 (ENSMSIG00000017665) #27	Shfl (ENSMSIG00000017630) #29	Angptl6 (ENSMSIG00000017615) #30	Ppan (ENSMSIG00000017577) #31	Eif3g (ENSMSIG00000017537) #32	Dnmt1 (ENSMSIG00000017200) #33	S1pr2 (ENSMSIG00000017197) #34	Mrpl4 (ENSMSIG00000017179) #35	Icam1 (ENSMSIG00000017165)	Icam4 (ENSMSIG00000017145)	Icam5 (ENSMSIG00000017102)	Zglp1 (ENSMSIG00000017087)
Steppe mouse	MODERN SPECIES	594																ENSMSIG00000007475 #22
Mouse	DUPLICATION
Mouse	MODERN SPECIES	18	Or7d11 (ENSMUSG00000044454) #7	Or7e174 (ENSMUSG00000044106) ##8	Or7e175 (ENSMUSG00000058491) ##8	Or8b12i (ENSMUSG00000066899)	Or7h8 (ENSMUSG00000061457)	Or7e176 (ENSMUSG00000066897) ##8	Or7d9 (ENSMUSG00000059623) #7	Or7e177 (ENSMUSG00000049028) ##8	Or7e178 (ENSMUSG00000066896) ##8	Zfp560 (ENSMUSG00000045519) #15	Zfp26 (ENSMUSG00000063108)	Zfp426 (ENSMUSG00000059475) #14	Zfp266 (ENSMUSG00000060510) #12	Zfp846 (ENSMUSG00000058192)	Fbxl12 (ENSMUSG00000066892) #20	Ubl5 (ENSMUSG00000084786) #22	Pin1 (ENSMUSG00000032171) #24	Olfm2 (ENSMUSG00000032172) #25	Col5a3 (ENSMUSG00000004098) #26	Rdh8 (ENSMUSG00000053773) #27	Shfl (ENSMUSG00000038884) #29	Angptl6 (ENSMUSG00000038742) #30	Ppan (ENSMUSG00000004100) #31	Eif3g (ENSMUSG00000070319) #32	Dnmt1 (ENSMUSG00000004099) #33	S1pr2 (ENSMUSG00000043895) #34	Mrpl4 (ENSMUSG00000003299) #35	Icam1 (ENSMUSG00000037405)	Icam4 (ENSMUSG00000001014)	Icam5 (ENSMUSG00000032174)	Zglp1 (ENSMUSG00000079681)
Mouse	DUPLICATION
Mouse	MODERN SPECIES	3	Dio2 (ENSMUSG00000007682)	Nrxn3 (ENSMUSG00000066392)	Adck1 (ENSMUSG00000021044)	Eif1ad15 (ENSMUSG00000093847)	Eif1ad7 (ENSMUSG00000079029)	Eif1ad10 (ENSMUSG00000095799)	Pramel51 (ENSMUSG00000066027)	Eif1ad18 (ENSMUSG00000114075)	Eif1ad11 (ENSMUSG00000095717)	Eif1ad16 (ENSMUSG00000096803)	Eif1ad17 (ENSMUSG00000096049)	Gm2042 (ENSMUSG00000096276)	Eif1ad14 (ENSMUSG00000096619)	Eif1ad4 (ENSMUSG00000113971)	Eif1ad3 (ENSMUSG00000072905)	Ubl5c (ENSMUSG00000113951) #22	Eif1ad2 (ENSMUSG00000079031)	Eif1ad13 (ENSMUSG00000113201)	Eif1ad19 (ENSMUSG00000095724)	Ubl5b (ENSMUSG00000113489) #22	Eif1ad6 (ENSMUSG00000092019)	Oog1 (ENSMUSG00000096576)	Eif1ad8 (ENSMUSG00000079034)	Eif1ad12 (ENSMUSG00000113805)	Snw1 (ENSMUSG00000021039)	Slirp (ENSMUSG00000021040)	Alkbh1 (ENSMUSG00000079036)	Sptlc2 (ENSMUSG00000021036)	Ism2 (ENSMUSG00000050671)	Ahsa1 (ENSMUSG00000021037)	Vipas39 (ENSMUSG00000021038)
Mouse	MODERN SPECIES	3	Eif1ad7 (ENSMUSG00000079029)	Eif1ad10 (ENSMUSG00000095799)	Pramel51 (ENSMUSG00000066027)	Eif1ad18 (ENSMUSG00000114075)	Eif1ad11 (ENSMUSG00000095717)	Eif1ad16 (ENSMUSG00000096803)	Eif1ad17 (ENSMUSG00000096049)	Gm2042 (ENSMUSG00000096276)	Eif1ad14 (ENSMUSG00000096619)	Eif1ad4 (ENSMUSG00000113971)	Eif1ad3 (ENSMUSG00000072905)	Ubl5c (ENSMUSG00000113951) #22	Eif1ad2 (ENSMUSG00000079031)	Eif1ad13 (ENSMUSG00000113201)	Eif1ad19 (ENSMUSG00000095724)	Ubl5b (ENSMUSG00000113489) #22	Eif1ad6 (ENSMUSG00000092019)	Oog1 (ENSMUSG00000096576)	Eif1ad8 (ENSMUSG00000079034)	Eif1ad12 (ENSMUSG00000113805)	Snw1 (ENSMUSG00000021039)	Slirp (ENSMUSG00000021040)	Alkbh1 (ENSMUSG00000079036)	Sptlc2 (ENSMUSG00000021036)	Ism2 (ENSMUSG00000050671)	Ahsa1 (ENSMUSG00000021037)	Vipas39 (ENSMUSG00000021038)	Noxred1 (ENSMUSG00000072919)	Samd15 (ENSMUSG00000090812)	Tmed8 (ENSMUSG00000034111)	Gstz1 (ENSMUSG00000021033)
Lesser Egyptian jerboa	DUPLICATION
Lesser Egyptian jerboa	MODERN SPECIES	311																ENSJJAG00000011674 #22
Lesser Egyptian jerboa	MODERN SPECIES	212								Ndufa4 (ENSJJAG00000016866)	ENSJJAG00000011830	Phf14 (ENSJJAG00000016257)	Thsd7a (ENSJJAG00000013811)	ENSJJAG00000012032	Vwde (ENSJJAG00000010406)	ENSJJAG00000019869	Tmem168 (ENSJJAG00000019830)	ENSJJAG00000011908 #22	Bmt2 (ENSJJAG00000018789)	Gpr85 (ENSJJAG00000018636)
Lesser Egyptian jerboa	MODERN SPECIES	143												ENSJJAG00000014205	Zfp266 (ENSJJAG00000014866) #12	Zfp426 (ENSJJAG00000021796) #14	Fbxl12 (ENSJJAG00000022996) #20	ENSJJAG00000023197 #22	ENSJJAG00000000532	Pin1rt1 (ENSJJAG00000000978) #24	Olfm2 (ENSJJAG00000009175) #25	Col5a3 (ENSJJAG00000012410) #26	Rdh8 (ENSJJAG00000017092) #27	Shfl (ENSJJAG00000018496) #29	Angptl6 (ENSJJAG00000018763) #30	Ppan (ENSJJAG00000016362) #31	Eif3g (ENSJJAG00000017602) #32	Dnmt1 (ENSJJAG00000021067) #33	ENSJJAG00000009832	S1pr2 (ENSJJAG00000013342) #34	ENSJJAG00000013403	Mrpl4 (ENSJJAG00000010573) #35	Icam1 (ENSJJAG00000014180)
Lagomorpha	ANCESTRAL SPECIES	141												ENSGT00940000164232.b	ENSGT00940000163151 #15	ENSGT00940000162380 #12	ENSGT00390000003354 #20	ENSGT00390000001945 #22	ENSGT00640000091578 #24	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00940000155412.b #27	ENSGT00940000164135 #28	ENSGT00390000005065 #29	ENSGT00940000160969 #30	ENSGT00530000064158 #31	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311	ENSGT00940000162431	ENSGT00940000162184
Rabbit	MODERN SPECIES	566			ENSOCUG00000037530 ##8	ENSOCUG00000027735	ENSOCUG00000027713	ZNF699 (ENSOCUG00000029223) #9	ZNF266 (ENSOCUG00000033882) #12	ENSOCUG00000029594 #15	ENSOCUG00000029473	ENSOCUG00000029276	ZNF426 (ENSOCUG00000003251) #14	ENSOCUG00000006857 #12	ENSOCUG00000029168	ENSOCUG00000036296	FBXL12 (ENSOCUG00000010381) #20	UBL5 (ENSOCUG00000029004) #22	ENSOCUG00000037613 #24	OLFM2 (ENSOCUG00000004707) #25	COL5A3 (ENSOCUG00000014857) #26	RDH8 (ENSOCUG00000011468) #27	ENSOCUG00000010097 #28	SHFL (ENSOCUG00000004728) #29	ENSOCUG00000023214	S1PR2 (ENSOCUG00000025826) #34	ENSOCUG00000029187 #35	ICAM1 (ENSOCUG00000029644)	ENSOCUG00000023156	RAVER1 (ENSOCUG00000020918)	ICAM3 (ENSOCUG00000027745)	TYK2 (ENSOCUG00000014816)
Pika	MODERN SPECIES	9525																UBL5 (ENSOPRG00000013412) #22
Laurasiatheria	ANCESTRAL SPECIES	15	ENSGT00940000164306	ENSGT00940000153686 #7	ENSGT00940000162877	ENSGT00940000156425	ENSGT00940000164510	ENSGT00940000163651	ENSGT00940000153277.A #8	ENSGT00940000163210 #9	ENSGT00940000164004 #10	ENSGT00940000163463 #11	ENSGT00940000162380 #12	ENSGT00940000163292 #14	ENSGT00940000163958 #18	ENSGT00390000003354 #20	ENSGT00990000205479	ENSGT00390000001945 #22	ENSGT00640000091578 #24	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00940000155412.b #27	ENSGT00940000164135 #28	ENSGT00390000005065 #29	ENSGT00940000160969 #30	ENSGT00530000064158 #31	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311	ENSGT00940000162431
Laurasiatheria_a	ANCESTRAL SPECIES	19	ENSGT00940000162532	ENSGT00940000162241	ENSGT00940000163783	ENSGT00940000164306	ENSGT00940000153686 #7	ENSGT00940000153277.A #8	ENSGT00940000156425	ENSGT00940000163210 #9	ENSGT00940000164004 #10	ENSGT00940000163463 #11	ENSGT00940000162380 #12	ENSGT00940000163292 #14	ENSGT00940000163958 #18	ENSGT00390000003354 #20	ENSGT00990000205479	ENSGT00390000001945 #22	ENSGT00640000091578 #24	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00940000155412.b #27	ENSGT00940000164135 #28	ENSGT00390000005065.d #29	ENSGT00940000160969 #30	ENSGT00530000064158 #31	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311	ENSGT00940000162431
Laurasiatheria_b	ANCESTRAL SPECIES	18	ENSGT00940000162241	ENSGT00940000163783	ENSGT00940000164306	ENSGT00940000153686 #7	ENSGT00940000163651	ENSGT00940000164510	ENSGT00940000156425	ENSGT00940000153277.A #8	ENSGT00940000163210 #9	ENSGT00940000164004 #10	ENSGT00940000163463 #11	ENSGT00940000162380 #12	ENSGT00940000163292 #14	ENSGT00940000163958 #18	ENSGT00390000003354 #20	ENSGT00390000001945 #22	ENSGT00640000091578 #24	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00940000155412.b #27	ENSGT00940000164135 #28	ENSGT00390000005065.d #29	ENSGT00940000160969 #30	ENSGT00530000064158 #31	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311	ENSGT00940000162431
Carnivora	ANCESTRAL SPECIES	6	ENSGT00940000164306	ENSGT00940000153686 #7	ENSGT00940000163651	ENSGT00940000162877.b	ENSGT00940000153277.A #8	ENSGT00940000156425	ENSGT00940000163210 #9	ENSGT00940000164004 #10	ENSGT00940000163463 #11	ENSGT00940000162380.s.b #12	ENSGT00940000163292 #14	ENSGT00940000162380.s.a #12	ENSGT00940000166886	ENSGT00940000163958 #18	ENSGT00390000003354 #20	ENSGT00390000001945 #22	ENSGT00640000091578 #24	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00940000155412.b #27	ENSGT00940000164135 #28	ENSGT00390000005065.d #29	ENSGT00940000160969 #30	ENSGT00530000064158 #31	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311	ENSGT00940000162431
Felidae	ANCESTRAL SPECIES	21	ENSGT00940000164306	ENSGT00940000153686 #7	ENSGT00940000163651	ENSGT00940000162877.b	ENSGT00940000153277.A #8	ENSGT00940000156425	ENSGT00940000163210 #9	ENSGT00940000164004 #10	ENSGT00940000163463 #11	ENSGT00940000162380.t #12	ENSGT00940000162380.s.b #12	ENSGT00940000162380.s.a #12	ENSGT00940000166886	ENSGT00940000163958 #18	ENSGT00390000003354 #20	ENSGT00390000001945 #22	ENSGT00640000091578 #24	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00940000155412.b #27	ENSGT00390000005065.d #29	ENSGT00940000160969 #30	ENSGT00530000064158 #31	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311	ENSGT00940000162431	ENSGT00940000162184
Cat	MODERN SPECIES	1	ENSFCAG00000040525	ZNF317 (ENSFCAG00000005824)	ENSFCAG00000021912	OR7D2 (ENSFCAG00000044251)	OR7D4 (ENSFCAG00000041195) #7	ENSFCAG00000041127	ENSFCAG00000050278	ZNF699 (ENSFCAG00000040923) #9	ENSFCAG00000042889 #10	ZNF177 (ENSFCAG00000040603) #11	ENSFCAG00000048920 #12	ENSFCAG00000050711 #12	ENSFCAG00000045297	ENSFCAG00000041740 #18	FBXL12 (ENSFCAG00000044922) #20	UBL5 (ENSFCAG00000009381) #22	PIN1 (ENSFCAG00000009380) #24	OLFM2 (ENSFCAG00000029446) #25	COL5A3 (ENSFCAG00000009383) #26	RDH8 (ENSFCAG00000009384) #27	SHFL (ENSFCAG00000009386) #29	ANGPTL6 (ENSFCAG00000009387) #30	PPAN (ENSFCAG00000009388) #31	P2RY11 (ENSFCAG00000030255)	EIF3G (ENSFCAG00000009389) #32	DNMT1 (ENSFCAG00000012246) #33	S1PR2 (ENSFCAG00000013003) #34	MRPL4 (ENSFCAG00000043071) #35	ICAM1 (ENSFCAG00000009431)	ICAM4 (ENSFCAG00000009432)	ICAM5 (ENSFCAG00000009433)
Panthera	ANCESTRAL SPECIES	15	ENSGT00940000163146	ENSGT00940000162532	ENSGT00940000162241	ENSGT00940000163783	ENSGT00940000164306	ENSGT00940000153686 #7	ENSGT00940000162877.b	ENSGT00940000153277.A #8	ENSGT00940000156425	ENSGT00940000163210 #9	ENSGT00940000164004 #10	ENSGT00940000163463 #11	ENSGT00940000162380.t.b #12	ENSGT00940000162380.t.a #12	ENSGT00390000003354 #20	ENSGT00390000001945 #22	ENSGT00640000091578 #24	ENSGT00940000159148 #25	ENSGT00940000155412.b #27	ENSGT00390000005065.d #29	ENSGT00940000160969 #30	ENSGT00530000064158 #31	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311	ENSGT00940000162431	ENSGT00940000162184	ENSGT00470000042444
Tiger	MODERN SPECIES	129	ZNF317 (ENSPTIG00000016461)	ENSPTIG00000008027	OR7D2 (ENSPTIG00000008021)	OR7D4 (ENSPTIG00000008019) #7	ENSPTIG00000008015 ##8	ENSPTIG00000016448	ENSPTIG00000016434 #8	ENSPTIG00000016428	ZNF699 (ENSPTIG00000016414) #9	ENSPTIG00000016402 #10	ZNF177 (ENSPTIG00000016395) #11	ENSPTIG00000016390 #12	ENSPTIG00000008010	ENSPTIG00000016382 #12	FBXL12 (ENSPTIG00000016362) #20	UBL5 (ENSPTIG00000016347) #22	PIN1 (ENSPTIG00000016328) #24	OLFM2 (ENSPTIG00000016320) #25	RDH8 (ENSPTIG00000016259) #27	SHFL (ENSPTIG00000016094) #29	ANGPTL6 (ENSPTIG00000015982) #30	PPAN (ENSPTIG00000015960) #31	EIF3G (ENSPTIG00000015950) #32	DNMT1 (ENSPTIG00000015548) #33
Panthera_a	ANCESTRAL SPECIES		ENSGT00940000163146	ENSGT00940000162532	ENSGT00940000162241	ENSGT00940000163783	ENSGT00940000164306	ENSGT00940000153686 #7	ENSGT00940000162877.b	ENSGT00940000153277.A #8	ENSGT00940000156425	ENSGT00940000163210 #9	ENSGT00940000164004 #10	ENSGT00940000163463 #11	ENSGT00940000162380.t.b #12	ENSGT00940000162380.t.a #12	ENSGT00390000003354 #20	ENSGT00390000001945 #22	ENSGT00640000091578 #24	ENSGT00940000159148 #25	ENSGT00940000155412.b #27	ENSGT00390000005065.d #29	ENSGT00940000160969 #30	ENSGT00530000064158 #31	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311	ENSGT00940000162431	ENSGT00940000162184	ENSGT00470000042444
lion	MODERN SPECIES	2	PNPLA6 (ENSPLOG00000002153)	MCOLN1 (ENSPLOG00000002317)	ZNF358 (ENSPLOG00000002344)	ENSPLOG00000002374	PEX11G (ENSPLOG00000002404)	ARHGEF18 (ENSPLOG00000002478)	INSR (ENSPLOG00000002580)	ENSPLOG00000002637	ENSPLOG00000002672	ZNF699 (ENSPLOG00000002685) #9	ENSPLOG00000002705 #10	ZNF177 (ENSPLOG00000002733) #11	ENSPLOG00000002758 #12	ENSPLOG00000002786 #12	FBXL12 (ENSPLOG00000002810) #20	UBL5 (ENSPLOG00000002830) #22	PIN1 (ENSPLOG00000002853) #24	OLFM2 (ENSPLOG00000002885) #25	RDH8 (ENSPLOG00000003040) #27	SHFL (ENSPLOG00000003064) #29	ANGPTL6 (ENSPLOG00000003100) #30	PPAN (ENSPLOG00000003131) #31	EIF3G (ENSPLOG00000003189) #32	DNMT1 (ENSPLOG00000003231) #33	S1PR2 (ENSPLOG00000003282) #34	MRPL4 (ENSPLOG00000003305) #35	ICAM1 (ENSPLOG00000003347)	ICAM4 (ENSPLOG00000003370)	ICAM5 (ENSPLOG00000003385)	ENSPLOG00000003406	FDX2 (ENSPLOG00000003426)
leopard	MODERN SPECIES	110	ZNF317 (ENSPPRG00000014318)	ENSPPRG00000016056	OR7D2 (ENSPPRG00000016094)	OR7D4 (ENSPPRG00000016110) #7	ENSPPRG00000020136	ENSPPRG00000016140	ENSPPRG00000023966 #8	ENSPPRG00000016197	ZNF699 (ENSPPRG00000023642) #9	ENSPPRG00000022882 #10	ZNF177 (ENSPPRG00000000109) #11	ENSPPRG00000016292	ENSPPRG00000001053	ENSPPRG00000001494 #18	FBXL12 (ENSPPRG00000002002) #20	UBL5 (ENSPPRG00000003235) #22	PIN1 (ENSPPRG00000003544) #24	ENSPPRG00000003598 #25	ENSPPRG00000004120 #25	RDH8 (ENSPPRG00000008058) #27	SHFL (ENSPPRG00000022038) #29	ANGPTL6 (ENSPPRG00000024345) #30	PPAN (ENSPPRG00000023895) #31	P2RY11 (ENSPPRG00000023599)	EIF3G (ENSPPRG00000023494) #32	DNMT1 (ENSPPRG00000003596) #33	S1PR2 (ENSPPRG00000017112) #34	MRPL4 (ENSPPRG00000004312) #35	ICAM1 (ENSPPRG00000005262)	ICAM4 (ENSPPRG00000005803)	ICAM5 (ENSPPRG00000006799)
Caniformia	ANCESTRAL SPECIES	4	ENSGT00940000164306	ENSGT00940000153686 #7	ENSGT00940000163651	ENSGT00940000162877.b	ENSGT00940000153277.A #8	ENSGT00940000156425	ENSGT00940000163210 #9	ENSGT00940000164004 #10	ENSGT00940000163463 #11	ENSGT00940000162380.s.b #12	ENSGT00940000163292 #14	ENSGT00940000162380.s.a #12	ENSGT00940000166886	ENSGT00940000163958 #18	ENSGT00390000003354 #20	ENSGT00390000001945 #22	ENSGT00640000091578 #24	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00940000155412.b #27	ENSGT00940000164135 #28	ENSGT00390000005065.d #29	ENSGT00940000160969 #30	ENSGT00530000064158 #31	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311	ENSGT00940000162431
Canidae	ANCESTRAL SPECIES		ENSGT00940000154619.g.a.b.b	ENSGT00940000163146	ENSGT00940000162532	ENSGT00940000162241	ENSGT00940000164306	ENSGT00940000153686 #7	ENSGT00940000153277.A #8	ENSGT00940000156425	ENSGT00940000163210 #9	ENSGT00940000164004 #10	ENSGT00940000163463 #11	ENSGT00940000162380.s.a #12	ENSGT00940000166886	ENSGT00940000163958 #18	ENSGT00390000003354 #20	ENSGT00390000001945 #22	ENSGT00640000091578 #24	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00940000155412.b #27	ENSGT00940000164135 #28	ENSGT00390000005065.d #29	ENSGT00940000160969 #30	ENSGT00530000064158 #31	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311	ENSGT00940000162431
Red fox	DUPLICATION
Red fox	MODERN SPECIES	98	ALPK1 (ENSVVUG00000002069)	NDUFA1 (ENSVVUG00000002163)	ENSVVUG00000002176	ENSVVUG00000002181	ZGRF1 (ENSVVUG00000002203)	LARP7 (ENSVVUG00000002274)	ENSVVUG00000002513	ENSVVUG00000005739	CAMK2D (ENSVVUG00000007922)	ARSJ (ENSVVUG00000007950)	UGT8 (ENSVVUG00000007954)	NDST4 (ENSVVUG00000007972)	ENSVVUG00000007981	ENSVVUG00000007997	ENSVVUG00000008001	ENSVVUG00000008039 #22	ENSVVUG00000008040	TRAM1L1 (ENSVVUG00000008075)	NDST3 (ENSVVUG00000008085)	PRSS12 (ENSVVUG00000008117)	ENSVVUG00000008123	METTL14 (ENSVVUG00000008131)	SEC24D (ENSVVUG00000008158)	SYNPO2 (ENSVVUG00000008167)	MYOZ2 (ENSVVUG00000008174)	ENSVVUG00000008185	USP53 (ENSVVUG00000008187)	C4orf3 (ENSVVUG00000008204)	FABP2 (ENSVVUG00000008206)	PDE5A (ENSVVUG00000008217)
Red fox	DUPLICATION
Red fox	MODERN SPECIES	212	ENSVVUG00000028279	ENSVVUG00000028281	ENSVVUG00000028283	ENSVVUG00000028284	ZNF699 (ENSVVUG00000028285) #9	ENSVVUG00000028286	ZNF317 (ENSVVUG00000028287)	OR7D2 (ENSVVUG00000028289)	OR7D4 (ENSVVUG00000028290) #7	ENSVVUG00000028291 #8	ENSVVUG00000028292	ZNF177 (ENSVVUG00000028293) #11	ENSVVUG00000028294 #12	ZNF846 (ENSVVUG00000028295) #18	FBXL12 (ENSVVUG00000028296) #20	ENSVVUG00000028298 #22	OLFM2 (ENSVVUG00000028299) #25	RDH8 (ENSVVUG00000028302) #27	ENSVVUG00000028304 #28	SHFL (ENSVVUG00000028305) #29	ANGPTL6 (ENSVVUG00000028307) #30	PPAN (ENSVVUG00000028309) #31	P2RY11 (ENSVVUG00000028314)	EIF3G (ENSVVUG00000028316) #32	DNMT1 (ENSVVUG00000028391) #33	S1PR2 (ENSVVUG00000028959) #34	MRPL4 (ENSVVUG00000028961) #35	ICAM1 (ENSVVUG00000028964)	ICAM4 (ENSVVUG00000028966)	ICAM5 (ENSVVUG00000028968)	ENSVVUG00000028971
Red fox	MODERN SPECIES	52	ENSVVUG00000030041	ENSVVUG00000030040	ENSVVUG00000030039	SLC47A2 (ENSVVUG00000030033)	ALDH3A1 (ENSVVUG00000030028)	ULK2 (ENSVVUG00000030016)	AKAP10 (ENSVVUG00000030013)	ENSVVUG00000030012	SPECC1 (ENSVVUG00000030010)	ADORA2B (ENSVVUG00000030008)	ZSWIM7 (ENSVVUG00000030007)	TTC19 (ENSVVUG00000030006)	NCOR1 (ENSVVUG00000029999)	PIGL (ENSVVUG00000029991)	ENSVVUG00000029989	ENSVVUG00000029987 #22	UBB (ENSVVUG00000029985)	TRPV2 (ENSVVUG00000029983)	LRRC75A (ENSVVUG00000029979)	ZNF287 (ENSVVUG00000029977)	ZNF624 (ENSVVUG00000029975)	ZNF286A (ENSVVUG00000029972)	ENSVVUG00000029970	UCHL1 (ENSVVUG00000029968)	TRIM16 (ENSVVUG00000029965)	ENSVVUG00000029961	CDRT1 (ENSVVUG00000029954)	ENSVVUG00000029948	ENSVVUG00000029946	ENSVVUG00000029943	TEKT3 (ENSVVUG00000029938)
Canis_lupus	ANCESTRAL SPECIES	1	ENSGT00940000163146	ENSGT00940000162532	ENSGT00940000162241	ENSGT00940000164306	ENSGT00940000163651	ENSGT00940000162877.b	ENSGT00940000153277.A #8	ENSGT00940000156425	ENSGT00940000163210 #9	ENSGT00940000164004 #10	ENSGT00940000163463 #11	ENSGT00940000162380.s.a #12	ENSGT00940000166886	ENSGT00940000163958 #18	ENSGT00390000003354 #20	ENSGT00390000001945 #22	ENSGT00640000091578 #24	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00940000155412.b #27	ENSGT00940000164135 #28	ENSGT00390000005065.d #29	ENSGT00940000160969 #30	ENSGT00530000064158 #31	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311	ENSGT00940000162431
Dog	DUPLICATION
Dog	MODERN SPECIES	33	PIRT (ENSCAFG00845002937)	SHISA6 (ENSCAFG00845002978)	DNAH9 (ENSCAFG00845003182)	ZNF18 (ENSCAFG00845003462)	ENSCAFG00845003482	MAP2K4 (ENSCAFG00845003515)	ENSCAFG00845003596	MYOCD (ENSCAFG00845003630)	ARHGAP44 (ENSCAFG00845003750)	ELAC2 (ENSCAFG00845003879)	HS3ST3A1 (ENSCAFG00845003985)	ENSCAFG00845004032	COX10 (ENSCAFG00845004049)	ENSCAFG00845004065	HS3ST3B1 (ENSCAFG00845004082)	ENSCAFG00845004106 #22	ENSCAFG00845004122	PMP22 (ENSCAFG00845004152)	TEKT3 (ENSCAFG00845004170)	ENSCAFG00845004179	ENSCAFG00845004185	TVP23B (ENSCAFG00845004197)	CDRT1 (ENSCAFG00845004214)	TRIM16 (ENSCAFG00845004235)	ENSCAFG00845004251	ENSCAFG00845004275	ENSCAFG00845004309	ZNF287 (ENSCAFG00845004321)	ENSCAFG00845004343	TRPV2 (ENSCAFG00845004373)	UBB (ENSCAFG00845004386)
Dog	MODERN SPECIES	25	ALPK1 (ENSCAFG00845016654)	ENSCAFG00845016756	NEUROG2 (ENSCAFG00845016784)	ZGRF1 (ENSCAFG00845017018)	LARP7 (ENSCAFG00845017248)	ANK2 (ENSCAFG00845020611)	CAMK2D (ENSCAFG00845028435)	ARSJ (ENSCAFG00845028819)	ENSCAFG00845028859	UGT8 (ENSCAFG00845028928)	ENSCAFG00845029073	NDST4 (ENSCAFG00845029101)	ENSCAFG00845029150	ENSCAFG00845029165	ENSCAFG00845029266	ENSCAFG00845029324 #22	ENSCAFG00845029353	TRAM1L1 (ENSCAFG00845029459)	NDST3 (ENSCAFG00845029512)	PRSS12 (ENSCAFG00845029625)	ENSCAFG00845029655	METTL14 (ENSCAFG00845029674)	SEC24D (ENSCAFG00845029774)	SYNPO2 (ENSCAFG00845029946)	MYOZ2 (ENSCAFG00845030005)	USP53 (ENSCAFG00845030047)	ENSCAFG00845030125	FABP2 (ENSCAFG00845030144)	PDE5A (ENSCAFG00845030199)	ENSCAFG00845030376
Dog	MODERN SPECIES	12	ZNF317 (ENSCAFG00845023848)	OR7D2 (ENSCAFG00845023810)	ENSCAFG00845023666	OR7E154 (ENSCAFG00845023639)	ENSCAFG00845023622 #8	ENSCAFG00845023596	ZNF699 (ENSCAFG00845023440) #9	ENSCAFG00845023376 #10	ZNF177 (ENSCAFG00845023273) #11	ENSCAFG00845023232	ENSCAFG00845023189 #12	OR7D7 (ENSCAFG00845023167)	ENSCAFG00845023146	ENSCAFG00845023091 #18	FBXL12 (ENSCAFG00845023009) #20	UBL5 (ENSCAFG00845022930) #22	PIN1 (ENSCAFG00845022850) #24	OLFM2 (ENSCAFG00845022738) #25	COL5A3 (ENSCAFG00845020278) #26	RDH8 (ENSCAFG00845019953) #27	ENSCAFG00845019148 #28	SHFL (ENSCAFG00845018904) #29	ANGPTL6 (ENSCAFG00845018834) #30	PPAN (ENSCAFG00845018657) #31	P2RY11 (ENSCAFG00845018602)	EIF3G (ENSCAFG00845018422) #32	DNMT1 (ENSCAFG00845018246) #33	S1PR2 (ENSCAFG00845018161) #34	MRPL4 (ENSCAFG00845028082) #35	ICAM1 (ENSCAFG00845027986)	ICAM4 (ENSCAFG00845027954)
Dingo	DUPLICATION
Dingo	MODERN SPECIES	112	ENSCAFG00020023365	ENSCAFG00020023368	ENSCAFG00020023370	OR7G3 (ENSCAFG00020023372)	ZNF699 (ENSCAFG00020023385) #9	ENSCAFG00020023392	ZNF317 (ENSCAFG00020023398)	ENSCAFG00020023399	ENSCAFG00020023403	ENSCAFG00020023406 #8	ENSCAFG00020023409 #11	ENSCAFG00020023417	ENSCAFG00020023426	ZNF846 (ENSCAFG00020023428) #18	FBXL12 (ENSCAFG00020023431) #20	ENSCAFG00020023435 #22	PIN1 (ENSCAFG00020023438) #24	OLFM2 (ENSCAFG00020023439) #25	RDH8 (ENSCAFG00020023479) #27	ENSCAFG00020023494 #28	SHFL (ENSCAFG00020023617) #29	ANGPTL6 (ENSCAFG00020023619) #30	PPAN (ENSCAFG00020023621) #31	P2RY11 (ENSCAFG00020023626)	EIF3G (ENSCAFG00020023628) #32	DNMT1 (ENSCAFG00020023719) #33	S1PR2 (ENSCAFG00020024403) #34	MRPL4 (ENSCAFG00020024405) #35	ICAM1 (ENSCAFG00020024415)	ICAM4 (ENSCAFG00020024419)	ICAM5 (ENSCAFG00020024426)
Dingo	MODERN SPECIES	373	TMEM220 (ENSCAFG00020001519)	PIRT (ENSCAFG00020001513)	DNAH9 (ENSCAFG00020001198)	ZNF18 (ENSCAFG00020001141)	MAP2K4 (ENSCAFG00020001091)	ENSCAFG00020001071	MYOCD (ENSCAFG00020001034)	ARHGAP44 (ENSCAFG00020000991)	ELAC2 (ENSCAFG00020000574)	HS3ST3A1 (ENSCAFG00020000488)	ENSCAFG00020000477	ENSCAFG00020000457	ENSCAFG00020000429	COX10 (ENSCAFG00020000420)	HS3ST3B1 (ENSCAFG00020000393)	ENSCAFG00020000359 #22	ENSCAFG00020000346	PMP22 (ENSCAFG00020000339)	TEKT3 (ENSCAFG00020000275)	ENSCAFG00020000255	CDRT4 (ENSCAFG00020000219)	ENSCAFG00020000197	ENSCAFG00020000178	TRIM16 (ENSCAFG00020000123)	ENSCAFG00020000105	ENSCAFG00020021801	ENSCAFG00020021799	ZNF287 (ENSCAFG00020021790)	LRRC75A (ENSCAFG00020021786)	TRPV2 (ENSCAFG00020021744)	ENSCAFG00020021723
Caniformia_b	ANCESTRAL SPECIES	23	ENSGT00940000163783	ENSGT00940000164306	ENSGT00940000153686 #7	ENSGT00940000163651	ENSGT00940000153277.A #8	ENSGT00940000156425	ENSGT00940000163210 #9	ENSGT00940000164004 #10	ENSGT00940000163463 #11	ENSGT00940000162380.s.b #12	ENSGT00940000163292 #14	ENSGT00940000162380.s.a #12	ENSGT00940000166886	ENSGT00940000163958 #18	ENSGT00390000003354 #20	ENSGT00390000001945 #22	ENSGT00640000091578 #24	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00940000155412.b #27	ENSGT00940000164135 #28	ENSGT00390000005065.d #29	ENSGT00940000160969 #30	ENSGT00530000064158 #31	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311	ENSGT00940000162431
Mustelinae	ANCESTRAL SPECIES	45							ENSGT00940000153277.A #8	ENSGT00940000156425	ENSGT00940000163210 #9	ENSGT00940000164004 #10	ENSGT00940000163463 #11	ENSGT00940000162380.s.a #12	ENSGT00940000166886	ENSGT00940000163958 #18	ENSGT00390000003354 #20	ENSGT00390000001945 #22	ENSGT00640000091578 #24	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00940000155412.b #27	ENSGT00940000164135 #28	ENSGT00390000005065.d #29	ENSGT00940000160969 #30	ENSGT00530000064158 #31	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311	ENSGT00940000162431
American mink	MODERN SPECIES	233							ENSNVIG00000023572	ENSNVIG00000023574	ZNF699 (ENSNVIG00000023577) #9	ENSNVIG00000023581 #10	ZNF177 (ENSNVIG00000023593) #11	ENSNVIG00000023605 #12	ENSNVIG00000023608	ENSNVIG00000023612 #18	FBXL12 (ENSNVIG00000023614) #20	UBL5 (ENSNVIG00000023617) #22	PIN1 (ENSNVIG00000023620) #24	OLFM2 (ENSNVIG00000023625) #25	COL5A3 (ENSNVIG00000023632) #26	RDH8 (ENSNVIG00000023645) #27	ENSNVIG00000023653 #28	SHFL (ENSNVIG00000023728) #29	ANGPTL6 (ENSNVIG00000023730) #30	PPAN (ENSNVIG00000023734) #31	P2RY11 (ENSNVIG00000023744)	EIF3G (ENSNVIG00000023747) #32	DNMT1 (ENSNVIG00000023752) #33	S1PR2 (ENSNVIG00000023762) #34	MRPL4 (ENSNVIG00000023765) #35	ICAM1 (ENSNVIG00000023769)	ICAM4 (ENSNVIG00000023772)
Ursidae	ANCESTRAL SPECIES	20	ENSGT00940000163783	ENSGT00940000164306	ENSGT00940000153686 #7	ENSGT00940000163651	ENSGT00940000153277.A #8	ENSGT00940000156425	ENSGT00940000163210 #9	ENSGT00940000164004 #10	ENSGT00940000163463 #11	ENSGT00940000162380.s.b #12	ENSGT00940000163292 #14	ENSGT00940000162380.s.a #12	ENSGT00940000166886	ENSGT00940000163958 #18	ENSGT00390000003354 #20	ENSGT00390000001945 #22	ENSGT00640000091578 #24	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00940000155412.b #27	ENSGT00940000164135 #28	ENSGT00390000005065.d #29	ENSGT00940000160969 #30	ENSGT00530000064158 #31	ENSGT01030000234518.C.a.a	ENSGT00510000047802.n #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311	ENSGT00940000162431
Giant Panda	MODERN SPECIES	14	ENSAMEG00000029012	ENSAMEG00000025705	ENSAMEG00000025440	ENSAMEG00000026692 #7	ENSAMEG00000018477	ENSAMEG00000019394 #8	ENSAMEG00000001212 #9	ENSAMEG00000030389 #10	ZNF177 (ENSAMEG00000001219) #11	ENSAMEG00000029434 #12	ENSAMEG00000001221 #14	ENSAMEG00000031145 #12	ENSAMEG00000019684	ZNF846 (ENSAMEG00000029737) #18	ENSAMEG00000030561 #20	UBL5 (ENSAMEG00000012371) #22	PIN1 (ENSAMEG00000012355) #24	ENSAMEG00000012343 #25	ENSAMEG00000024157 #25	RDH8 (ENSAMEG00000012151) #27	ENSAMEG00000012033 #28	SHFL (ENSAMEG00000012021) #29	ANGPTL6 (ENSAMEG00000012016) #30	P2RY11 (ENSAMEG00000019674)	EIF3G (ENSAMEG00000011963) #32	DNMT1 (ENSAMEG00000011823) #33	S1PR2 (ENSAMEG00000019659) #34	MRPL4 (ENSAMEG00000011808) #35	ICAM1 (ENSAMEG00000011805)	ICAM4 (ENSAMEG00000011803)	ICAM5 (ENSAMEG00000011775)
Ursus	ANCESTRAL SPECIES	93															ENSGT00390000003354 #20	ENSGT00390000001945 #22	ENSGT00640000091578 #24	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00940000155412.b #27	ENSGT00940000164135 #28	ENSGT00390000005065.c.b #29	ENSGT00390000005065.d #29	ENSGT00940000160969 #30	ENSGT00530000064158 #31	ENSGT01030000234518.C.a.a	ENSGT00510000047802.n #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311
American black bear	MODERN SPECIES	2152														ENSUAMG00000018747	FBXL12 (ENSUAMG00000018746) #20	ENSUAMG00000018745 #22	PIN1 (ENSUAMG00000018744) #24	OLFM2 (ENSUAMG00000018743) #25	COL5A3 (ENSUAMG00000018667) #26	RDH8 (ENSUAMG00000018666) #27	ENSUAMG00000018665 #28
Polar bear	MODERN SPECIES	312															FBXL12 (ENSUMAG00000025134) #20	ENSUMAG00000025133 #22	PIN1 (ENSUMAG00000025132) #24	OLFM2 (ENSUMAG00000025131) #25	COL5A3 (ENSUMAG00000025128) #26	RDH8 (ENSUMAG00000025126) #27	ENSUMAG00000025115 #28	ENSUMAG00000025113 #29	ENSUMAG00000025112 #30	P2RY11 (ENSUMAG00000025109)	EIF3G (ENSUMAG00000025108) #32	DNMT1 (ENSUMAG00000025107) #33	ENSUMAG00000025106 #34	MRPL4 (ENSUMAG00000025105) #35	ENSUMAG00000025104	ENSUMAG00000025103	ICAM5 (ENSUMAG00000025102)
Laurasiatheria_c	ANCESTRAL SPECIES	16	ENSGT00940000154619.g.a.b.a	ENSGT00940000154619.g.b	ENSGT00940000154131.c.b	ENSGT00940000163146	ENSGT00940000162241	ENSGT00940000163783	ENSGT00940000164306	ENSGT00940000153686 #7	ENSGT00940000163651	ENSGT00940000153277.A #8	ENSGT00940000156425	ENSGT00940000163210 #9	ENSGT00940000163463 #11	ENSGT00940000163958 #18	ENSGT00390000003354 #20	ENSGT00390000001945 #22	ENSGT00640000091578 #24	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00940000155412.b #27	ENSGT00940000165585	ENSGT00940000164135 #28	ENSGT00390000005065.d #29	ENSGT00940000160969 #30	ENSGT00530000064158 #31	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311
Equus	ANCESTRAL SPECIES	53	ENSGT00940000162241	ENSGT00940000163783	ENSGT00940000164306	ENSGT00940000153686.m #7	ENSGT00940000162380.q.a #12	ENSGT00940000153686.n #7	ENSGT00940000163651	ENSGT00940000153277.A.c.a #8	ENSGT00940000163210 #9	ENSGT00940000163463 #11	ENSGT00940000162380.q.b #12	ENSGT00940000163292 #14	ENSGT00940000162380.r #12	ENSGT00940000166594	ENSGT00390000003354 #20	ENSGT00390000001945 #22	ENSGT00640000091578 #24	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00940000165585	ENSGT00940000164135 #28	ENSGT00390000005065.d #29	ENSGT00940000160969 #30	ENSGT00530000064158 #31	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311	ENSGT00940000162431
Donkey	MODERN SPECIES	12	ENSEASG00005030414 #11	ENSEASG00005032785	ENSEASG00005028652 #7	ENSEASG00005010626	ENSEASG00005029056 #7	ENSEASG00005037775 #14	ENSEASG00005037600	ENSEASG00005037993 #7	ENSEASG00005037572 #7	ENSEASG00005032529	ENSEASG00005010618	ENSEASG00005010615 #18	ENSEASG00005023756 #12	ENSEASG00005027280	FBXL12 (ENSEASG00005010614) #20	UBL5 (ENSEASG00005010612) #22	ENSEASG00005010611 #24	OLFM2 (ENSEASG00005010608) #25	COL5A3 (ENSEASG00005010596) #26	ENSEASG00005010590	ENSEASG00005010586 #28	SHFL (ENSEASG00005010583) #29	ANGPTL6 (ENSEASG00005025125) #30	PPAN (ENSEASG00005010574) #31	P2RY11 (ENSEASG00005034778)	ENSEASG00005010571 #32	DNMT1 (ENSEASG00005010561) #33	S1PR2 (ENSEASG00005026403) #34	MRPL4 (ENSEASG00005010556) #35	ENSEASG00005010553	ICAM4 (ENSEASG00005024479)
Chiroptera	ANCESTRAL SPECIES	59													ENSGT00940000163210 #9	ENSGT00940000163958 #18	ENSGT00390000003354 #20	ENSGT00390000001945 #22	ENSGT00640000091578 #24	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00940000155412.b #27	ENSGT00940000165585	ENSGT00940000164135 #28	ENSGT00390000005065.d #29	ENSGT00940000160969 #30	ENSGT00530000064158 #31	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311
Megabat	MODERN SPECIES	2245														ZNF846 (ENSPVAG00000008625) #18	FBXL12 (ENSPVAG00000008627) #20	UBL5 (ENSPVAG00000008628) #22	PIN1 (ENSPVAG00000008629) #24	ENSPVAG00000008631 #25	COL5A3 (ENSPVAG00000008633) #26	RDH8 (ENSPVAG00000008653) #27
Microchiroptera	ANCESTRAL SPECIES	53													ENSGT00940000163210 #9	ENSGT00940000163958 #18	ENSGT00390000003354 #20	ENSGT00390000001945 #22	ENSGT00640000091578 #24	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00940000165585	ENSGT00940000155412.b #27	ENSGT00940000164135 #28	ENSGT00390000005065.d #29	ENSGT00940000160969 #30	ENSGT00530000064158 #31	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311
Greater horseshoe bat	MODERN SPECIES	9	PPP2R2A (ENSRFEG00010006444)	BNIP3L (ENSRFEG00010006372)	PNMA2 (ENSRFEG00010006352)	DPYSL2 (ENSRFEG00010006268)	ADRA1A (ENSRFEG00010006218)	OR7D2 (ENSRFEG00010006200)	OR7D4 (ENSRFEG00010006172) #7	ENSRFEG00010006149	ENSRFEG00010006089	ENSRFEG00010006057	ENSRFEG00010006027	ZNF699 (ENSRFEG00010005993) #9	ENSRFEG00010005962 #18	ENSRFEG00010005931 #18	FBXL12 (ENSRFEG00010005897) #20	UBL5 (ENSRFEG00010005864) #22	PIN1 (ENSRFEG00010005812) #24	OLFM2 (ENSRFEG00010005765) #25	RDH8 (ENSRFEG00010005664) #27	ENSRFEG00010005567 #28	SHFL (ENSRFEG00010005394) #29	ANGPTL6 (ENSRFEG00010005369) #30	PPAN (ENSRFEG00010018720) #31	P2RY11 (ENSRFEG00010018700)	EIF3G (ENSRFEG00010018651) #32	MRPL4 (ENSRFEG00010017044) #35	ICAM1 (ENSRFEG00010017025)	ICAM4 (ENSRFEG00010016957)	ICAM5 (ENSRFEG00010016803)	ENSRFEG00010016728	FDX2 (ENSRFEG00010016631)
Microbat	MODERN SPECIES	1472																UBL5 (ENSMLUG00000027369) #22	PIN1 (ENSMLUG00000008553) #24	OLFM2 (ENSMLUG00000008560) #25	ENSMLUG00000012724 #26	ENSMLUG00000030568	ENSMLUG00000014180 #28	SHFL (ENSMLUG00000022228) #29	ANGPTL6 (ENSMLUG00000029782) #30	PPAN (ENSMLUG00000014186) #31	P2RY11 (ENSMLUG00000014192)	EIF3G (ENSMLUG00000014196) #32	DNMT1 (ENSMLUG00000001347) #33	S1PR2 (ENSMLUG00000026451) #34	MRPL4 (ENSMLUG00000012280) #35	ICAM1 (ENSMLUG00000012289)	ICAM4 (ENSMLUG00000012295)
Artiodactyla	ANCESTRAL SPECIES	22	ENSGT00940000154619.g.a.b.a	ENSGT00940000154619.g.a.b.b	ENSGT00940000163945	ENSGT00940000154619.g.b.a.a	ENSGT00940000154619.g.b.a.b	ENSGT00940000163146	ENSGT00940000162241	ENSGT00940000164306	ENSGT00940000163783	ENSGT00940000163210 #9	ENSGT00940000164004 #10	ENSGT00940000163463 #11	ENSGT00940000153165.a.b.a.t.a	ENSGT00390000003354 #20	ENSGT00990000205479	ENSGT00390000001945 #22	ENSGT00640000091578 #24	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00940000155412.b #27	ENSGT00940000164135 #28	ENSGT00390000005065.d #29	ENSGT00940000160969 #30	ENSGT00530000064158 #31	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311	ENSGT00940000162431
Suina	ANCESTRAL SPECIES	16	ENSGT00940000166764	ENSGT00940000154131.a.b	ENSGT00940000162532	ENSGT00940000154131.a.a	ENSGT00940000154619.g.a.a	ENSGT00940000154131.b	ENSGT00940000154619.g.a.b.b	ENSGT00940000154619.g.b.a.a	ENSGT00940000154619.g.b.a.b	ENSGT00940000163146	ENSGT00940000162241	ENSGT00940000163783	ENSGT00940000164306	ENSGT00940000162380 #12	ENSGT00390000003354 #20	ENSGT00390000001945 #22	ENSGT00640000091578 #24	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00940000155412.b #27	ENSGT00940000164135 #28	ENSGT00390000005065.d #29	ENSGT00940000160969 #30	ENSGT00530000064158 #31	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311	ENSGT00940000162431
Chacoan peccary	MODERN SPECIES	770	ENSCWAG00000007504	ENSCWAG00000007493	ENSCWAG00000007470	ENSCWAG00000007460	ENSCWAG00000007428	ENSCWAG00000007413	OR7G3 (ENSCWAG00000007400)	ZNF317 (ENSCWAG00000007371)	OR7D2 (ENSCWAG00000007354)	ENSCWAG00000007337	ENSCWAG00000007322	ENSCWAG00000007311	ENSCWAG00000007302	ENSCWAG00000007266 #12	FBXL12 (ENSCWAG00000007231) #20	UBL5 (ENSCWAG00000007190) #22	PIN1 (ENSCWAG00000007164) #24	OLFM2 (ENSCWAG00000007120) #25	COL5A3 (ENSCWAG00000006862) #26	RDH8 (ENSCWAG00000006746) #27	ENSCWAG00000005053 #28	SHFL (ENSCWAG00000004841) #29	ANGPTL6 (ENSCWAG00000004802) #30	PPAN (ENSCWAG00000004764) #31	P2RY11 (ENSCWAG00000004744)	EIF3G (ENSCWAG00000004694) #32	DNMT1 (ENSCWAG00000004600) #33	S1PR2 (ENSCWAG00000004569) #34	MRPL4 (ENSCWAG00000004503) #35	ICAM1 (ENSCWAG00000004470)	ICAM4 (ENSCWAG00000004447)
Pig	DUPLICATION
Pig	MODERN SPECIES	10	ENSSSCG00000050800	ENSSSCG00000023132	ENSSSCG00000053504	ENSSSCG00000060502	ENSSSCG00000055989 #7	ENSSSCG00000057656 #7	ENSSSCG00000022738	ENSSSCG00000036978	ENSSSCG00000063539 #7	ENSSSCG00000037685 #7	ENSSSCG00000060241 #7	ENSSSCG00000063204	ENSSSCG00000058680 #7	ENSSSCG00000033816	FBXL12 (ENSSSCG00000013670) #20	ENSSSCG00000023331 #22	PIN1 (ENSSSCG00000039619) #24	OLFM2 (ENSSSCG00000027434) #25	COL5A3 (ENSSSCG00000013667) #26	RDH8 (ENSSSCG00000013666) #27	ENSSSCG00000013665 #28	SHFL (ENSSSCG00000013664) #29	ANGPTL6 (ENSSSCG00000013663) #30	PPAN (ENSSSCG00000013662) #31	P2RY11 (ENSSSCG00000024072)	EIF3G (ENSSSCG00000013661) #32	DNMT1 (ENSSSCG00000013659) #33	S1PR2 (ENSSSCG00000013658) #34	MRPL4 (ENSSSCG00000013656) #35	ICAM1 (ENSSSCG00000013655)	ICAM4 (ENSSSCG00000013654)
Pig	MODERN SPECIES	7	CDC20B (ENSSSCG00000048484)	GZMA (ENSSSCG00000016903)	GZMA (ENSSSCG00000016902)	GZMK (ENSSSCG00000016901)	ESM1 (ENSSSCG00000016900)	ENSSSCG00000016898	ENSSSCG00000056604	SNX18 (ENSSSCG00000031337)	HSPB3 (ENSSSCG00000036059)	ARL15 (ENSSSCG00000016894)	ENSSSCG00000041656	NDUFS4 (ENSSSCG00000016893)	FST (ENSSSCG00000016892)	MOCS2 (ENSSSCG00000016888)	ITGA2 (ENSSSCG00000016887)	ENSSSCG00000055991 #22	PELO (ENSSSCG00000016884)	ITGA1 (ENSSSCG00000016885)	ISL1 (ENSSSCG00000016883)	PARP8 (ENSSSCG00000016882)	EMB (ENSSSCG00000029484)	ENSSSCG00000016881	HCN1 (ENSSSCG00000026527)	MRPS30 (ENSSSCG00000032275)	FGF10 (ENSSSCG00000016878)	ENSSSCG00000055815	NNT (ENSSSCG00000016877)	PAIP1 (ENSSSCG00000016874)	C5orf34 (ENSSSCG00000016876)	TMEM267 (ENSSSCG00000032979)	CCL28 (ENSSSCG00000016871)
Artiodactyla_a	ANCESTRAL SPECIES	23	ENSGT00940000154619.g.b.a.b	ENSGT00940000154619.g.b.a.a	ENSGT00940000162241	ENSGT00940000163783	ENSGT00940000164306	ENSGT00940000163651	ENSGT00940000164510	ENSGT00940000156425	ENSGT00940000163210 #9	ENSGT00940000164004 #10	ENSGT00940000163463 #11	ENSGT00940000163292 #14	ENSGT00940000162380 #12	ENSGT00390000003354 #20	ENSGT00990000205479	ENSGT00390000001945 #22	ENSGT00640000091578 #24	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00940000155412.b #27	ENSGT00940000164135 #28	ENSGT00390000005065.d #29	ENSGT00940000160969 #30	ENSGT00530000064158 #31	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311	ENSGT00940000162431
Camelidae	ANCESTRAL SPECIES	61															ENSGT00390000003354 #20	ENSGT00390000001945 #22	ENSGT00640000091578 #24	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00940000155412.b #27	ENSGT00940000164135 #28	ENSGT00390000005065.d #29	ENSGT00940000160969 #30	ENSGT00530000064158 #31	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311	ENSGT00940000162431	ENSGT00940000162184
Arabian camel	MODERN SPECIES	14	OR7G2 (ENSCDRG00005003764)	ENSCDRG00005003785	ENSCDRG00005003842	ZNF317 (ENSCDRG00005003880)	ENSCDRG00005003940	ENSCDRG00005003955 #14	ZNF177 (ENSCDRG00005004057) #11	ZNF699 (ENSCDRG00005004185) #9	ENSCDRG00005004237	ENSCDRG00005004256	ENSCDRG00005004274	ENSCDRG00005004292 #18	OR7D4 (ENSCDRG00005004314) #7	ENSCDRG00005004336	FBXL12 (ENSCDRG00005004348) #20	UBL5 (ENSCDRG00005004386) #22	PIN1 (ENSCDRG00005004410) #24	OLFM2 (ENSCDRG00005004459) #25	COL5A3 (ENSCDRG00005004545) #26	RDH8 (ENSCDRG00005004777) #27	ENSCDRG00005004918 #28	SHFL (ENSCDRG00005006144) #29	ANGPTL6 (ENSCDRG00005006190) #30	PPAN (ENSCDRG00005006218) #31	EIF3G (ENSCDRG00005006325) #32	DNMT1 (ENSCDRG00005006428) #33	S1PR2 (ENSCDRG00005006497) #34	MRPL4 (ENSCDRG00005006515) #35	ICAM1 (ENSCDRG00005006651)	ICAM4 (ENSCDRG00005006691)	ICAM5 (ENSCDRG00005006746)
Artiodactyla_b	ANCESTRAL SPECIES	23	ENSGT00940000154619.g.a.b.b	ENSGT00940000154619.g.b.a.b	ENSGT00940000154619.g.b.a.a	ENSGT00940000162241	ENSGT00940000163783	ENSGT00940000164306	ENSGT00940000164510.a	ENSGT00940000156425	ENSGT00940000163210 #9	ENSGT00940000164004 #10	ENSGT00940000163463 #11	ENSGT00940000163292 #14	ENSGT00940000162380 #12	ENSGT00390000003354 #20	ENSGT00990000205479	ENSGT00390000001945 #22	ENSGT00640000091578 #24	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00940000155412.b #27	ENSGT00940000164135 #28	ENSGT00390000005065.d #29	ENSGT00940000160969 #30	ENSGT00530000064158 #31	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311	ENSGT00940000162431
Cetacea	ANCESTRAL SPECIES	1	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000163012	ENSGT00940000160844.c	ENSGT00940000156425	ENSGT00940000163210 #9	ENSGT00940000164004 #10	ENSGT00940000163463 #11	ENSGT00940000162380 #12	ENSGT00940000153165.a.b.a.t.a	ENSGT00390000003354 #20	ENSGT00990000205479	ENSGT00390000001945 #22	ENSGT00640000091578 #24	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00940000155412.b #27	ENSGT00940000164135 #28	ENSGT00390000005065.d #29	ENSGT00940000160969 #30	ENSGT00530000064158 #31	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311	ENSGT00940000162431
Blue whale	MODERN SPECIES	14	ZNF414 (ENSBMSG00010013078)	MYO1F (ENSBMSG00010012965)	ADAMTS10 (ENSBMSG00010012896)	ACTL9 (ENSBMSG00010012871)	ENSBMSG00010012848	ENSBMSG00010012830	ZNF699 (ENSBMSG00010012815) #9	ZNF177 (ENSBMSG00010012776) #11	ENSBMSG00010012749 #14	ENSBMSG00010012734 #7	ENSBMSG00010012724 #7	ENSBMSG00010012720	ENSBMSG00010012697 #12	ENSBMSG00010012686	FBXL12 (ENSBMSG00010012661) #20	UBL5 (ENSBMSG00010012647) #22	PIN1 (ENSBMSG00010012624) #24	OLFM2 (ENSBMSG00010012599) #25	COL5A3 (ENSBMSG00010012500) #26	RDH8 (ENSBMSG00010012443) #27	ENSBMSG00010012109 #28	SHFL (ENSBMSG00010011987) #29	ANGPTL6 (ENSBMSG00010011973) #30	PPAN (ENSBMSG00010011939) #31	P2RY11 (ENSBMSG00010011933)	EIF3G (ENSBMSG00010011917) #32	DNMT1 (ENSBMSG00010011892) #33	S1PR2 (ENSBMSG00010011881) #34	MRPL4 (ENSBMSG00010011859) #35	ICAM1 (ENSBMSG00010011829)	ICAM4 (ENSBMSG00010011803)
Odontoceti	ANCESTRAL SPECIES	1	ENSGT00940000154595	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000163012	ENSGT00940000160844.c	ENSGT00940000156425	ENSGT00940000163210 #9	ENSGT00940000164004 #10	ENSGT00940000163463 #11	ENSGT00940000162380 #12	ENSGT00390000003354 #20	ENSGT00990000205479	ENSGT00390000001945 #22	ENSGT00640000091578 #24	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00940000155412.b #27	ENSGT00940000164135 #28	ENSGT00390000005065.d #29	ENSGT00940000160969 #30	ENSGT00530000064158 #31	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311	ENSGT00940000162431
Odontoceti_a	ANCESTRAL SPECIES	1	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000163012	ENSGT00940000160844.c	ENSGT00940000156425	ENSGT00940000163210 #9	ENSGT00940000164004 #10	ENSGT00940000163463 #11	ENSGT00940000163292 #14	ENSGT00940000153686.i #7	ENSGT00390000003354 #20	ENSGT00990000205479	ENSGT00390000001945 #22	ENSGT00640000091578 #24	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00940000155412.b #27	ENSGT00940000164135 #28	ENSGT00390000005065.d #29	ENSGT00940000160969 #30	ENSGT00530000064158 #31	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311	ENSGT00940000162431
Dolphin	MODERN SPECIES	4459																UBL5 (ENSTTRG00000008535) #22	PIN1 (ENSTTRG00000008524) #24	OLFM2 (ENSTTRG00000008480) #25
Odontoceti_b	ANCESTRAL SPECIES	1	ENSGT00940000154595	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000164108.b	ENSGT00940000163012	ENSGT00940000160844.c	ENSGT00940000156425	ENSGT00940000163210 #9	ENSGT00940000163463 #11	ENSGT00940000163292 #14	ENSGT00940000153686.i #7	ENSGT00390000003354 #20	ENSGT00990000205479	ENSGT00390000001945 #22	ENSGT00640000091578 #24	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00940000155412.b #27	ENSGT00940000164135 #28	ENSGT00390000005065.d #29	ENSGT00940000160969 #30	ENSGT00530000064158 #31	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311	ENSGT00940000162431
Vaquita	MODERN SPECIES	14	MARCHF2 (ENSPSNG00000013117)	HNRNPM (ENSPSNG00000013194)	PRAM1 (ENSPSNG00000013286)	ZNF414 (ENSPSNG00000013396)	MYO1F (ENSPSNG00000013483)	ADAMTS10 (ENSPSNG00000014228)	NFILZ (ENSPSNG00000014433)	ACTL9 (ENSPSNG00000014452)	ENSPSNG00000014500	ENSPSNG00000014650	ZNF699 (ENSPSNG00000015586) #9	ENSPSNG00000015654 #11	ENSPSNG00000015869 #14	OR7D4 (ENSPSNG00000016140) #7	FBXL12 (ENSPSNG00000016895) #20	UBL5 (ENSPSNG00000017005) #22	PIN1 (ENSPSNG00000017083) #24	OLFM2 (ENSPSNG00000017145) #25	COL5A3 (ENSPSNG00000017300) #26	RDH8 (ENSPSNG00000017891) #27	ENSPSNG00000018199 #28	SHFL (ENSPSNG00000019767) #29	ANGPTL6 (ENSPSNG00000019799) #30	PPAN (ENSPSNG00000019833) #31	P2RY11 (ENSPSNG00000019859)	EIF3G (ENSPSNG00000019875) #32	ENSPSNG00000019916	DNMT1 (ENSPSNG00000019956) #33	S1PR2 (ENSPSNG00000019997) #34	MRPL4 (ENSPSNG00000020027) #35	ICAM1 (ENSPSNG00000020091)
Monodontidae	ANCESTRAL SPECIES	17	ENSGT00940000159478	ENSGT00940000161659	ENSGT00940000158995	ENSGT00940000154595	ENSGT00530000063460.B	ENSGT00390000006876	ENSGT00940000158870	ENSGT00940000158404	ENSGT00940000163012	ENSGT00940000160844.c	ENSGT00940000156425	ENSGT00940000163210 #9	ENSGT00940000163463 #11	ENSGT00390000003354 #20	ENSGT00990000205479	ENSGT00390000001945 #22	ENSGT00640000091578 #24	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00940000155412.b #27	ENSGT00940000164135 #28	ENSGT00390000005065.d #29	ENSGT00940000160969 #30	ENSGT00530000064158 #31	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311	ENSGT00940000162431
Beluga whale	MODERN SPECIES	62	ANGPTL4 (ENSDLEG00000014044)	ENSDLEG00000013992	MARCH2 (ENSDLEG00000013953)	HNRNPM (ENSDLEG00000013836)	PRAM1 (ENSDLEG00000013796)	ZNF414 (ENSDLEG00000013766)	MYO1F (ENSDLEG00000012681)	ADAMTS10 (ENSDLEG00000012334)	ACTL9 (ENSDLEG00000012304)	ENSDLEG00000012289	ENSDLEG00000012286	ZNF699 (ENSDLEG00000012279) #9	ENSDLEG00000012219 #11	FBXL12 (ENSDLEG00000012204) #20	ENSDLEG00000012198	UBL5 (ENSDLEG00000012177) #22	PIN1 (ENSDLEG00000012167) #24	OLFM2 (ENSDLEG00000012039) #25	COL5A3 (ENSDLEG00000010780) #26	RDH8 (ENSDLEG00000010637) #27	ENSDLEG00000009210 #28	CUNH19orf66 (ENSDLEG00000008954) #29	ANGPTL6 (ENSDLEG00000008894) #30	PPAN (ENSDLEG00000008825) #31	P2RY11 (ENSDLEG00000008792)	EIF3G (ENSDLEG00000008729) #32	ENSDLEG00000008705	DNMT1 (ENSDLEG00000008585) #33	S1PR2 (ENSDLEG00000008556) #34	MRPL4 (ENSDLEG00000008517) #35	ICAM1 (ENSDLEG00000008458)
Narwhal	MODERN SPECIES	298	KANK3 (ENSMMNG00015019936)	ANGPTL4 (ENSMMNG00015019994)	RAB11B (ENSMMNG00015020044)	MARCHF2 (ENSMMNG00015020080)	HNRNPM (ENSMMNG00015020142)	PRAM1 (ENSMMNG00015020241)	ZNF414 (ENSMMNG00015020270)	MYO1F (ENSMMNG00015020312)	ADAMTS10 (ENSMMNG00015020451)	ACTL9 (ENSMMNG00015020513)	ENSMMNG00015020529	ENSMMNG00015020570	ZNF699 (ENSMMNG00015020612) #9	ENSMMNG00015020652 #11	FBXL12 (ENSMMNG00015020707) #20	UBL5 (ENSMMNG00015020729) #22	PIN1 (ENSMMNG00015020753) #24	OLFM2 (ENSMMNG00015020773) #25	COL5A3 (ENSMMNG00015020837) #26	RDH8 (ENSMMNG00015020928) #27	ENSMMNG00015020960 #28	SHFL (ENSMMNG00015021020) #29	ANGPTL6 (ENSMMNG00015021045) #30	PPAN (ENSMMNG00015021073) #31	P2RY11 (ENSMMNG00015021114)	EIF3G (ENSMMNG00015021125) #32	ENSMMNG00015021153	ENSMMNG00015021161	DNMT1 (ENSMMNG00015021181) #33	S1PR2 (ENSMMNG00015021200) #34	MRPL4 (ENSMMNG00015021211) #35
Sperm whale	DUPLICATION
Sperm whale	MODERN SPECIES		ENSPCTG00005001988	KCNH8 (ENSPCTG00005002008)	ENSPCTG00005002029	EFHB (ENSPCTG00005002045)	RAB5A (ENSPCTG00005002067)	PP2D1 (ENSPCTG00005002090)	KAT2B (ENSPCTG00005002112)	SGO1 (ENSPCTG00005002136)	ZNF385D (ENSPCTG00005002168)	UBE2E2 (ENSPCTG00005002250)	ENSPCTG00005002282	NKIRAS1 (ENSPCTG00005002302)	ENSPCTG00005002311	NR1D2 (ENSPCTG00005002323)	THRB (ENSPCTG00005002356)	ENSPCTG00005002407 #22	ENSPCTG00005002423	RARB (ENSPCTG00005002435)	TOP2B (ENSPCTG00005002467)	NGLY1 (ENSPCTG00005002617)	OXSM (ENSPCTG00005002681)	LRRC3B (ENSPCTG00005002693)	ENSPCTG00005002714	ENSPCTG00005002721	PLCH1 (ENSPCTG00005002793)	ENSPCTG00005002938	C1H3orf33 (ENSPCTG00005002945)	SLC33A1 (ENSPCTG00005002962)	GMPS (ENSPCTG00005003000)	ENSPCTG00005003035	ENSPCTG00005003068
Sperm whale	MODERN SPECIES	196															FBXL12 (ENSPCTG00005020337) #20	ENSPCTG00005020289 #22	PIN1 (ENSPCTG00005020244) #24	OLFM2 (ENSPCTG00005020175) #25
Pecora	ANCESTRAL SPECIES		ENSGT00940000154619.g.b.a.b.a	ENSGT00940000154619.g.b.a.a.a	ENSGT00950000182890.A.b	ENSGT00940000163154.A.a.a	ENSGT00940000163154.B.e	ENSGT00940000153582.b.a.a.b	ENSGT00940000162241	ENSGT00940000163783	ENSGT00940000164306	ENSGT00940000156425.d.a.a.a.a.a	ENSGT00940000163210 #9	ENSGT00940000163463 #11	ENSGT00940000163292 #14	ENSGT00940000162380 #12	ENSGT00390000003354 #20	ENSGT00390000001945 #22	ENSGT00640000091578 #24	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00940000155412.b #27	ENSGT00940000164135 #28	ENSGT00390000005065.d #29	ENSGT00940000160969 #30	ENSGT00530000064158 #31	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311.c.a	ENSGT00940000162431
Yarkand deer	DUPLICATION
Yarkand deer	MODERN SPECIES	12	KCND3 (ENSCHYG00000007683)	DDX20 (ENSCHYG00000007715)	INKA2 (ENSCHYG00000007838)	RAP1A (ENSCHYG00000007851)	TMIGD3 (ENSCHYG00000007896)	C1orf162 (ENSCHYG00000007944)	ENSCHYG00000007985	WDR77 (ENSCHYG00000008032)	ENSCHYG00000008093	ENSCHYG00000008237	ENSCHYG00000008388	ENSCHYG00000008426	ENSCHYG00000008629	ENSCHYG00000010693	CHIA (ENSCHYG00000010860)	ENSCHYG00000011001 #22	CHI3L2 (ENSCHYG00000011034)	DENND2D (ENSCHYG00000011291)	CEPT1 (ENSCHYG00000011445)	DRAM2 (ENSCHYG00000011556)	ENSCHYG00000011636	CD53 (ENSCHYG00000011827)	ENSCHYG00000011890	KCNA3 (ENSCHYG00000011946)	KCNA2 (ENSCHYG00000011991)	KCNA10 (ENSCHYG00000012029)	ENSCHYG00000012048	PROK1 (ENSCHYG00000012093)	LAMTOR5 (ENSCHYG00000012127)	SLC16A4 (ENSCHYG00000012250)	RBM15 (ENSCHYG00000012338)
Yarkand deer	MODERN SPECIES	2	OR1L1 (ENSCHYG00000009579)	ENSCHYG00000009562	OR1B1 (ENSCHYG00000009530)	ENSCHYG00000009511	ENSCHYG00000009379	ENSCHYG00000009312	ENSCHYG00000009274	OR1J1 (ENSCHYG00000009250)	ENSCHYG00000009223	ENSCHYG00000009197	ENSCHYG00000009164	ENSCHYG00000018704	ENSCHYG00000018667	ENSCHYG00000018628	ENSCHYG00000018555	ENSCHYG00000018533 #22	PTGS1 (ENSCHYG00000017893)	ENSCHYG00000017724	MRRF (ENSCHYG00000017424)	ENSCHYG00000017363	LHX6 (ENSCHYG00000017135)	MORN5 (ENSCHYG00000017039)	NDUFA8 (ENSCHYG00000016988)	ENSCHYG00000016926	DAB2IP (ENSCHYG00000016211)	ENSCHYG00000016003	ENSCHYG00000015664	ENSCHYG00000015614	CMPK2 (ENSCHYG00000015445)	RSAD2 (ENSCHYG00000015364)	RNF144A (ENSCHYG00000015190)
Yarkand deer	MODERN SPECIES	32	ENSCHYG00000000612 ##8	ENSCHYG00000000618	ENSCHYG00000000624	ENSCHYG00000000631	ENSCHYG00000000641	ENSCHYG00000000650	ENSCHYG00000000655	ENSCHYG00000000671	ENSCHYG00000000683	ZNF699 (ENSCHYG00000000751) #9	ZNF177 (ENSCHYG00000000769) #11	ENSCHYG00000000790 #14	ENSCHYG00000000804	ENSCHYG00000000816 #12	FBXL12 (ENSCHYG00000000828) #20	ENSCHYG00000000849 #22	PIN1 (ENSCHYG00000000871) #24	OLFM2 (ENSCHYG00000000890) #25	RDH8 (ENSCHYG00000001045) #27	ENSCHYG00000001067	ENSCHYG00000001157 #28	SHFL (ENSCHYG00000001268) #29	ANGPTL6 (ENSCHYG00000001299) #30	PPAN (ENSCHYG00000001330) #31	EIF3G (ENSCHYG00000001385) #32	DNMT1 (ENSCHYG00000001426) #33	S1PR2 (ENSCHYG00000001459) #34	MRPL4 (ENSCHYG00000001481) #35	ENSCHYG00000001506	ICAM4 (ENSCHYG00000001512)	ICAM5 (ENSCHYG00000001528)
Percora_a	ANCESTRAL SPECIES		ENSGT00940000164306	ENSGT00940000163651.l	ENSGT00940000164510.b	ENSGT00940000164510.a.a.b.a	ENSGT00940000154131	ENSGT00940000164510.a.b.a	ENSGT00940000156425.d.a.a.a.a.a	ENSGT00940000156425.d.a.a.b.a	ENSGT00940000156425.d.a.a.a.b	ENSGT00940000156425.d.a.a.b.b	ENSGT00940000163210 #9	ENSGT00940000163463 #11	ENSGT00940000163292 #14	ENSGT00940000162380 #12	ENSGT00390000003354 #20	ENSGT00390000001945 #22	ENSGT00640000091578 #24	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00940000155412.b #27	ENSGT00940000164135 #28	ENSGT00390000005065.d #29	ENSGT00940000160969 #30	ENSGT00530000064158 #31	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311.c.b	ENSGT00940000162311.c.a
Siberian musk deer	MODERN SPECIES	131	ENSMMSG00000004393	ENSMMSG00000004381	ENSMMSG00000004373	ENSMMSG00000004362	ENSMMSG00000004353	ENSMMSG00000004326	ENSMMSG00000004317	ENSMMSG00000004310	ZNF699 (ENSMMSG00000004299) #9	ENSMMSG00000004294	ENSMMSG00000004282 #14	ENSMMSG00000004274 #12	ENSMMSG00000004267 #14	ENSMMSG00000004258 #11	FBXL12 (ENSMMSG00000004245) #20	UBL5 (ENSMMSG00000004232) #22	PIN1 (ENSMMSG00000004218) #24	OLFM2 (ENSMMSG00000004197) #25	COL5A3 (ENSMMSG00000003961) #26	RDH8 (ENSMMSG00000003898) #27	ENSMMSG00000003224 #28	SHFL (ENSMMSG00000003057) #29	ANGPTL6 (ENSMMSG00000003030) #30	PPAN (ENSMMSG00000002995) #31	P2RY11 (ENSMMSG00000002986)	EIF3G (ENSMMSG00000002948) #32	DNMT1 (ENSMMSG00000002790) #33	S1PR2 (ENSMMSG00000002764) #34	MRPL4 (ENSMMSG00000002737) #35	ENSMMSG00000002662	ENSMMSG00000002633
Bovidae	ANCESTRAL SPECIES		ENSGT00940000164306	ENSGT00940000164888.b	ENSGT00940000163651.l	ENSGT00940000164510.b	ENSGT00940000164510.a.a.b.a.a	ENSGT00940000154131	ENSGT00940000164510.a.b.a	ENSGT00940000156425.d.a.a.a.a.a	ENSGT00940000156425.d.a.a.b.a	ENSGT00940000163210 #9	ENSGT00940000163463 #11	ENSGT00940000153165.a.b.a.u	ENSGT00940000162380 #12	ENSGT00940000163292 #14	ENSGT00390000003354 #20	ENSGT00390000001945 #22	ENSGT00640000091578 #24	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00940000155412.b #27	ENSGT00940000164135 #28	ENSGT00390000005065.d #29	ENSGT00940000160969 #30	ENSGT00530000064158 #31	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311.c.b	ENSGT00940000162311.c.a
Caprinae	ANCESTRAL SPECIES	3	ENSGT00940000163945.a	ENSGT00940000154619.g.a.b.a	ENSGT00940000154619.g.b.a.a.a	ENSGT00940000162241	ENSGT00940000163783	ENSGT00940000164306	ENSGT00940000163651.l	ENSGT00940000164510.b	ENSGT00940000164510.a.b.a	ENSGT00940000156425.d.a.a.b.a	ENSGT00940000163210 #9	ENSGT00940000163463 #11	ENSGT00940000153165.a.b.a.u	ENSGT00940000162380 #12	ENSGT00390000003354 #20	ENSGT00390000001945 #22	ENSGT00640000091578 #24	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00940000155412.b #27	ENSGT00940000164135 #28	ENSGT00390000005065.d #29	ENSGT00940000160969 #30	ENSGT00530000064158 #31	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311.c.a	ENSGT00940000162431
Rambouillet Sheep	MODERN SPECIES	21	ENSOARG00020000501	ENSOARG00020000513	ENSOARG00020000555	ZNF317 (ENSOARG00020000578)	ENSOARG00020000630	OR7D2 (ENSOARG00020000640)	ENSOARG00020000655	ENSOARG00020000670	ENSOARG00020000678	ENSOARG00020000688	ENSOARG00020000705	ENSOARG00020000708	ENSOARG00020000730	ZNF699 (ENSOARG00020000751) #9	FBXL12 (ENSOARG00020000845) #20	UBL5 (ENSOARG00020000869) #22	PIN1 (ENSOARG00020000893) #24	OLFM2 (ENSOARG00020000916) #25	COL5A3 (ENSOARG00020001143) #26	RDH8 (ENSOARG00020002133) #27	ENSOARG00020002281 #28	SHFL (ENSOARG00020003046) #29	ENSOARG00020003136 #30	PPAN (ENSOARG00020003235) #31	ENSOARG00020003511	ENSOARG00020003518	ENSOARG00020003533	ENSOARG00020003548 #29	ENSOARG00020003602 #30	EIF3G (ENSOARG00020003676) #32	DNMT1 (ENSOARG00020003738) #33
Bovinae	ANCESTRAL SPECIES	2	ENSGT01030000234623.a.a.a.a.b.p	ENSGT00940000164510.a.b.b	ENSGT00940000156425.d.a.b	ENSGT00940000156425.d.a.a.a.a.b	ENSGT00940000156425.d.b	ENSGT00940000156425.d.a.a.a.b	ENSGT00940000156425.d.a.a.b.a	ENSGT00940000156425.d.a.a.a.a.a	ENSGT00940000156425.d.a.a.b.b	ENSGT00940000163210 #9	ENSGT00940000163463 #11	ENSGT00940000153165.a.b.a.u	ENSGT00940000162380 #12	ENSGT00940000163292 #14	ENSGT00390000003354 #20	ENSGT00390000001945 #22	ENSGT00640000091578 #24	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00940000155412.b #27	ENSGT00940000164135 #28	ENSGT00390000005065.d #29	ENSGT00940000160969 #30	ENSGT00530000064158 #31	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311.c.b	ENSGT00940000162311.c.a
American bison	DUPLICATION
American bison	MODERN SPECIES	3349	OXTR (ENSBBBG00000014600)	RAD18 (ENSBBBG00000014638)	SRGAP3 (ENSBBBG00000014747)	ENSBBBG00000014775	ENSBBBG00000014779	ENSBBBG00000008911	ENSBBBG00000007134	ENSBBBG00000003641	ENSBBBG00000014797	ENSBBBG00000014809	ENSBBBG00000002816	ENSBBBG00000014850	ZNF177 (ENSBBBG00000002804) #11	ENSBBBG00000001106 #14	FBXL12 (ENSBBBG00000001083) #20	UBL5 (ENSBBBG00000001060) #22	PIN1 (ENSBBBG00000001029) #24	OLFM2 (ENSBBBG00000001003) #25	COL5A3 (ENSBBBG00000000880) #26	RDH8 (ENSBBBG00000000860) #27	ENSBBBG00000003785 #28	SHFL (ENSBBBG00000015312) #29	ANGPTL6 (ENSBBBG00000001396) #30	PPAN (ENSBBBG00000001358) #31	P2RY11 (ENSBBBG00000001353)	EIF3G (ENSBBBG00000001326) #32	DNMT1 (ENSBBBG00000003484) #33	S1PR2 (ENSBBBG00000015343) #34	MRPL4 (ENSBBBG00000015394) #35	ICAM1 (ENSBBBG00000015412)	ICAM4 (ENSBBBG00000003843)
American bison	MODERN SPECIES	3109	CYBRD1 (ENSBBBG00000005056)	ENSBBBG00000005051	ENSBBBG00000019334	ENSBBBG00000009175	DYNC1I2 (ENSBBBG00000019323)	SLC25A12 (ENSBBBG00000019135)	HAT1 (ENSBBBG00000009158)	METAP1D (ENSBBBG00000019106)	DLX1 (ENSBBBG00000019095)	DLX2 (ENSBBBG00000019086)	ITGA6 (ENSBBBG00000004869)	PDK1 (ENSBBBG00000018765)	RAPGEF4 (ENSBBBG00000018704)	MAP3K20 (ENSBBBG00000018360)	CDCA7 (ENSBBBG00000018271)	ENSBBBG00000018261 #22
Bos	ANCESTRAL SPECIES	3	ENSGT01030000234623.a.a.a.a.b.p	ENSGT00940000164510.a.b.b	ENSGT00940000156425.d.a.a.a.a.a.b	ENSGT00940000156425.d.a.b	ENSGT00940000156425.d.a.a.a.a.b	ENSGT00940000156425.d.b	ENSGT00940000156425.d.a.a.a.b	ENSGT00940000156425.d.a.a.b.a	ENSGT00940000156425.d.a.a.b.b	ENSGT00940000163210 #9	ENSGT00940000163463 #11	ENSGT00940000153165.a.b.a.u	ENSGT00940000162380 #12	ENSGT00940000163292 #14	ENSGT00390000003354 #20	ENSGT00390000001945 #22	ENSGT00640000091578 #24	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00940000155412.b #27	ENSGT00940000164135 #28	ENSGT00390000005065.d #29	ENSGT00940000160969 #30	ENSGT00530000064158 #31	ENSGT01030000234518.C.a.a	ENSGT00510000047802.p #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311.c.b	ENSGT00940000162311.c.a
Bos_a	ANCESTRAL SPECIES	2		ENSGT00940000154131	ENSGT00940000164510.a.b.a	ENSGT00940000156425.d.a.a.a.a.a.b	ENSGT00940000156425.d.a.b	ENSGT00940000156425.d.a.a.a.a.b	ENSGT00940000156425.d.a.a.a.b	ENSGT00940000156425.d.a.a.b.a	ENSGT00940000156425.d.a.a.b.b	ENSGT00940000163210 #9	ENSGT00940000163463 #11	ENSGT00940000153165.a.b.a.u	ENSGT00940000162380 #12	ENSGT00940000163292 #14	ENSGT00390000003354 #20	ENSGT00390000001945 #22	ENSGT00640000091578 #24	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00940000155412.b #27	ENSGT00940000164135 #28	ENSGT00390000005065.d #29	ENSGT00940000160969 #30	ENSGT00530000064158 #31	ENSGT01030000234518.C.a.a	ENSGT00510000047802.p #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311.c.a	ENSGT00940000162431
Domestic yak	DUPLICATION
Domestic yak	MODERN SPECIES	11	ENSBGRG00000009482	ENSBGRG00000009517	DYNC1I2 (ENSBGRG00000009556)	SLC25A12 (ENSBGRG00000009957)	HAT1 (ENSBGRG00000010265)	METAP1D (ENSBGRG00000010401)	DLX1 (ENSBGRG00000010658)	DLX2 (ENSBGRG00000010765)	ITGA6 (ENSBGRG00000010970)	ENSBGRG00000011777	PDK1 (ENSBGRG00000011803)	RAPGEF4 (ENSBGRG00000012108)	MAP3K20 (ENSBGRG00000013013)	CDCA7 (ENSBGRG00000013198)	ENSBGRG00000013492	ENSBGRG00000013535 #22	SP3 (ENSBGRG00000013570)	ENSBGRG00000013676	ENSBGRG00000013728	SP9 (ENSBGRG00000014139)	CIR1 (ENSBGRG00000014162)	SCRN3 (ENSBGRG00000014271)	GPR155 (ENSBGRG00000014360)	ENSBGRG00000014674	ENSBGRG00000014699	CHRNA1 (ENSBGRG00000014839)	CHN1 (ENSBGRG00000015101)	ATF2 (ENSBGRG00000015648)	ATP5MC3 (ENSBGRG00000016024)	ENSBGRG00000016132	LNPK (ENSBGRG00000016182)
Domestic yak	MODERN SPECIES	27	ENSBGRG00000001282	ENSBGRG00000001285	ENSBGRG00000001294	ENSBGRG00000001311	ENSBGRG00000001319	ENSBGRG00000001325	ENSBGRG00000001334	ENSBGRG00000001371	ENSBGRG00000001386	ZNF699 (ENSBGRG00000001399) #9	ZNF177 (ENSBGRG00000001426) #11	ENSBGRG00000001454	ENSBGRG00000001463 #14	ENSBGRG00000001489	FBXL12 (ENSBGRG00000001506) #20	ENSBGRG00000001526 #22	PIN1 (ENSBGRG00000001548) #24	OLFM2 (ENSBGRG00000001600) #25	COL5A3 (ENSBGRG00000001716) #26	RDH8 (ENSBGRG00000001767) #27	SHFL (ENSBGRG00000002101) #29	ANGPTL6 (ENSBGRG00000002157) #30	PPAN (ENSBGRG00000002190) #31	P2RY11 (ENSBGRG00000002275)	EIF3G (ENSBGRG00000002308) #32	DNMT1 (ENSBGRG00000002388) #33	S1PR2 (ENSBGRG00000002416) #34	MRPL4 (ENSBGRG00000002458) #35	ENSBGRG00000002625	ICAM4 (ENSBGRG00000002716)	ICAM5 (ENSBGRG00000002740)
Wild yak	DUPLICATION
Wild yak	MODERN SPECIES	2505																ENSBMUG00000026586 #22
Wild yak	MODERN SPECIES	2786																ENSBMUG00000021710 #22	PIN1 (ENSBMUG00000021698) #24	OLFM2 (ENSBMUG00000021685) #25	COL5A3 (ENSBMUG00000021640) #26	RDH8 (ENSBMUG00000021585) #27	ENSBMUG00000021441 #28	SHFL (ENSBMUG00000021026) #29	ANGPTL6 (ENSBMUG00000020986) #30	PPAN (ENSBMUG00000020960) #31	P2RY11 (ENSBMUG00000020941)	EIF3G (ENSBMUG00000020932) #32	DNMT1 (ENSBMUG00000020870) #33	S1PR2 (ENSBMUG00000020784) #34	MRPL4 (ENSBMUG00000020770) #35	ENSBMUG00000020740
Bos_b	ANCESTRAL SPECIES	2	ENSGT00940000164510.a.b.b	ENSGT00940000156425.d.a.a.a.a.a.b	ENSGT00940000156425.d.a.b	ENSGT00940000156425.d.a.a.a.a.b	ENSGT00940000156425.d.b	ENSGT00940000156425.d.a.a.a.a.a.a.a	ENSGT00940000156425.d.a.a.a.b	ENSGT00940000156425.d.a.a.b.a	ENSGT00940000156425.d.a.a.b.b	ENSGT00940000163210 #9	ENSGT00940000153165.a.b.a.u	ENSGT00940000162380 #12	ENSGT00940000163292 #14	ENSGT00940000163463 #11	ENSGT00390000003354 #20	ENSGT00390000001945 #22	ENSGT00640000091578 #24	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00940000155412.b #27	ENSGT00940000164135 #28	ENSGT00390000005065.d #29	ENSGT00940000160969 #30	ENSGT00530000064158 #31	ENSGT01030000234518.C.a.a	ENSGT00510000047802.p #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00950000185283	ENSGT00940000162311.d
Cow	DUPLICATION
Cow	MODERN SPECIES	11	DCAF17 (ENSBTAG00000007683)	ENSBTAG00000053081	CYBRD1 (ENSBTAG00000007898)	ENSBTAG00000048244	DYNC1I2 (ENSBTAG00000002646)	SLC25A12 (ENSBTAG00000016762)	HAT1 (ENSBTAG00000010118)	METAP1D (ENSBTAG00000019075)	DLX1 (ENSBTAG00000015217)	DLX2 (ENSBTAG00000005741)	ITGA6 (ENSBTAG00000017266)	PDK1 (ENSBTAG00000016836)	RAPGEF4 (ENSBTAG00000020984)	MAP3K20 (ENSBTAG00000001083)	CDCA7 (ENSBTAG00000003458)	ENSBTAG00000050579 #22	SP3 (ENSBTAG00000000176)	ENSBTAG00000053359	OLA1 (ENSBTAG00000006970)	ENSBTAG00000052569	SP9 (ENSBTAG00000014949)	CIR1 (ENSBTAG00000038620)	SCRN3 (ENSBTAG00000012966)	GPR155 (ENSBTAG00000021636)	WIPF1 (ENSBTAG00000001585)	CHRNA1 (ENSBTAG00000018253)	CHN1 (ENSBTAG00000008028)	ATF2 (ENSBTAG00000002295)	ATP5MC3 (ENSBTAG00000002944)	ENSBTAG00000031711	LNPK (ENSBTAG00000018061)
Cow	MODERN SPECIES		HLCS (ENSBTAG00000033679)	RIPPLY3 (ENSBTAG00000051916)	PIGP (ENSBTAG00000055107)	TTC3 (ENSBTAG00000008167)	VPS26C (ENSBTAG00000004791)	DYRK1A (ENSBTAG00000001771)	KCNJ6 (ENSBTAG00000037616)	KCNJ15 (ENSBTAG00000000973)	ERG (ENSBTAG00000011001)	ETS2 (ENSBTAG00000009214)	PIK3R4 (ENSBTAG00000020787)	COL6A6 (ENSBTAG00000012837)	COL6A5 (ENSBTAG00000049122)	CAPN7 (ENSBTAG00000006479)	SH3BP5 (ENSBTAG00000023377)	ENSBTAG00000030592 #22	METTL6 (ENSBTAG00000023375)	EAF1 (ENSBTAG00000019202)	COLQ (ENSBTAG00000051541)	COLQ (ENSBTAG00000040193)	HACL1 (ENSBTAG00000003718)	BTD (ENSBTAG00000019129)	ANKRD28 (ENSBTAG00000024815)	GALNT15 (ENSBTAG00000008240)	ENSBTAG00000051065	DPH3 (ENSBTAG00000003916)	ENSBTAG00000053091	OXNAD1 (ENSBTAG00000004891)	RFTN1 (ENSBTAG00000030593)	ENSBTAG00000051752	DAZL (ENSBTAG00000000502)
Cow	MODERN SPECIES	26	OR7E202 (ENSBTAG00000040482)	ENSBTAG00000054866	OR7E191P (ENSBTAG00000051507)	ENSBTAG00000004369	ENSBTAG00000053212	OR7E184P (ENSBTAG00000054276)	OR7E188 (ENSBTAG00000047799)	ENSBTAG00000050203	ENSBTAG00000046139	ENSBTAG00000047414	ZNF177 (ENSBTAG00000050244) #11	ENSBTAG00000025146	ZNF266 (ENSBTAG00000049881) #14	ENSBTAG00000035777 #11	FBXL12 (ENSBTAG00000025148) #20	UBL5 (ENSBTAG00000049452) #22	PIN1 (ENSBTAG00000016988) #24	OLFM2 (ENSBTAG00000007550) #25	COL5A3 (ENSBTAG00000010179) #26	RDH8 (ENSBTAG00000010188) #27	ENSBTAG00000015557 #28	SHFL (ENSBTAG00000015636) #29	ANGPTL6 (ENSBTAG00000039302) #30	PPAN (ENSBTAG00000012745) #31	P2RY11 (ENSBTAG00000013536)	EIF3G (ENSBTAG00000002734) #32	DNMT1 (ENSBTAG00000002736) #33	S1PR2 (ENSBTAG00000002738) #34	MRPL4 (ENSBTAG00000001419)	ENSBTAG00000053933	ENSBTAG00000049560
Hybrid Bos Indicus	DUPLICATION
Hybrid Bos Indicus	MODERN SPECIES	11	ENSBIXG00005004610	CYBRD1 (ENSBIXG00005026983)	DYNC1I2 (ENSBIXG00005027153)	SLC25A12 (ENSBIXG00005027277)	ENSBIXG00005027305	HAT1 (ENSBIXG00005005621)	DLX1 (ENSBIXG00005006946)	DLX2 (ENSBIXG00005027459)	ENSBIXG00005027485	ENSBIXG00005027496	ITGA6 (ENSBIXG00005027649)	PDK1 (ENSBIXG00005006953)	RAPGEF4 (ENSBIXG00005028149)	MAP3K20 (ENSBIXG00005028315)	CDCA7 (ENSBIXG00005028490)	ENSBIXG00005028515 #22	SP3 (ENSBIXG00005005344)	ENSBIXG00005004930	OLA1 (ENSBIXG00005028684)	ENSBIXG00005004969	SP9 (ENSBIXG00005002344)	CIR1 (ENSBIXG00005005349)	SCRN3 (ENSBIXG00005028812)	GPR155 (ENSBIXG00005028873)	ENSBIXG00005002196	CHRNA1 (ENSBIXG00005028981)	CHN1 (ENSBIXG00005001962)	ATF2 (ENSBIXG00005001719)	ATP5MC3 (ENSBIXG00005029222)	ENSBIXG00005029239	LNPK (ENSBIXG00005005282)
Hybrid Bos Indicus	MODERN SPECIES	26	OR7G1 (ENSBIXG00005024892)	ENSBIXG00005024899	ENSBIXG00005024908	ENSBIXG00005024944	ENSBIXG00005007397	ENSBIXG00005006684	ENSBIXG00005024990	ENSBIXG00005025112	ENSBIXG00005025131	ENSBIXG00005004278 #9	ZNF177 (ENSBIXG00005025181) #11	ENSBIXG00005004287	ENSBIXG00005006857 #12	ENSBIXG00005006524 #14	FBXL12 (ENSBIXG00005025351) #20	ENSBIXG00005004319 #22	PIN1 (ENSBIXG00005025457) #24	OLFM2 (ENSBIXG00005004339) #25	COL5A3 (ENSBIXG00005025683) #26	RDH8 (ENSBIXG00005025738) #27	ENSBIXG00005025866 #28	SHFL (ENSBIXG00005025958) #29	ANGPTL6 (ENSBIXG00005026015) #30	PPAN (ENSBIXG00005026042) #31	P2RY11 (ENSBIXG00005007635)	EIF3G (ENSBIXG00005026069) #32	DNMT1 (ENSBIXG00005026225) #33	S1PR2 (ENSBIXG00005002546) #34	MRPL4 (ENSBIXG00005026363) #35	ENSBIXG00005026424	ENSBIXG00005026437
Atlantogenata	ANCESTRAL SPECIES	41												ENSGT00940000162877	ENSGT00940000156425	ENSGT00940000164510	ENSGT00390000003354 #20	ENSGT00390000001945 #22	ENSGT00640000091578 #24	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00940000155412.b #27	ENSGT00940000164135 #28	ENSGT00390000005065 #29	ENSGT00940000160969 #30	ENSGT00530000064158 #31	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311	ENSGT00940000162431
Afrotheria	ANCESTRAL SPECIES	38												ENSGT00940000162877	ENSGT00940000156425	ENSGT00940000164510	ENSGT00390000003354 #20	ENSGT00390000001945 #22	ENSGT00640000091578 #24	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00940000155412.b #27	ENSGT00940000164135 #28	ENSGT00390000005065 #29	ENSGT00940000160969 #30	ENSGT00530000064158 #31	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311	ENSGT00940000162431
Afrotheria_a	ANCESTRAL SPECIES	39												ENSGT00940000162877	ENSGT00940000156425.`b.a	ENSGT00940000164510	ENSGT00390000003354 #20	ENSGT00390000001945 #22	ENSGT00640000091578 #24	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00940000155412.b #27	ENSGT00940000164135 #28	ENSGT00390000005065 #29	ENSGT00940000160969 #30	ENSGT00530000064158 #31	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000162311	ENSGT00940000162431
Elephant	MODERN SPECIES	270	ENSLAFG00000030372 #7	ENSLAFG00000006049	ENSLAFG00000029630	ENSLAFG00000027974	ENSLAFG00000026595	ENSLAFG00000031006	ENSLAFG00000023279	ENSLAFG00000027953	ENSLAFG00000030829	ENSLAFG00000032039	ENSLAFG00000029508	ENSLAFG00000028902	ENSLAFG00000031801	ENSLAFG00000032730	FBXL12 (ENSLAFG00000000472) #20	UBL5 (ENSLAFG00000012892) #22	PIN1 (ENSLAFG00000007143) #24	OLFM2 (ENSLAFG00000014617) #25	COL5A3 (ENSLAFG00000026566) #26	RDH8 (ENSLAFG00000017417) #27	ENSLAFG00000008805 #28	SHFL (ENSLAFG00000022271) #29	ANGPTL6 (ENSLAFG00000016395) #30	PPAN (ENSLAFG00000016399) #31	P2RY11 (ENSLAFG00000031035)	EIF3G (ENSLAFG00000006469) #32	DNMT1 (ENSLAFG00000002818) #33	S1PR2 (ENSLAFG00000028576) #34	MRPL4 (ENSLAFG00000015366) #35	ENSLAFG00000013278	ICAM5 (ENSLAFG00000026578)
Xenarthra	ANCESTRAL SPECIES	1519															ENSGT00390000003354 #20	ENSGT00390000001945 #22	ENSGT00940000159148 #25
Armadillo	MODERN SPECIES	2157															FBXL12 (ENSDNOG00000039725) #20	ENSDNOG00000037465 #22	OLFM2 (ENSDNOG00000033186) #25
Marsupialia	ANCESTRAL SPECIES	1	ENSGT00940000162162.a	ENSGT00550000075201	ENSGT00940000164787	ENSGT01030000234558.D.b	ENSGT00940000154149.b.b	ENSGT00550000075110	ENSGT00940000159323	ENSGT00940000161246	ENSGT00940000160542	ENSGT00940000162643	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064	ENSGT00390000007919	ENSGT00390000003354 #20	ENSGT00390000001945 #22	ENSGT00960000190426	ENSGT00640000091578 #24	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00940000155412.b #27	ENSGT00940000164135 #28	ENSGT00390000005065 #29	ENSGT00940000160969 #30	ENSGT00530000064158 #31	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #32	ENSGT00390000005100.r.b #33	ENSGT00390000005100.r.a #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35
Marsupialia_b	ANCESTRAL SPECIES	2	ENSGT00550000075201	ENSGT00940000164787	ENSGT00950000182890.D.c.a.a.a.a.b	ENSGT01030000234558.D.b	ENSGT00940000154149.b.b	ENSGT00550000075110	ENSGT00940000159323	ENSGT00940000161246	ENSGT00940000160542	ENSGT00940000162643	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064	ENSGT00390000007919	ENSGT00390000003354 #20	ENSGT00390000001945 #22	ENSGT00640000091578 #24	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00940000155412.b #27	ENSGT00940000164135 #28	ENSGT00390000005065 #29	ENSGT00940000160969 #30	ENSGT00530000064158 #31	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #32	ENSGT00390000005100.q #33	ENSGT00390000005100.r.b #33	ENSGT00390000005100.r.a #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35
Diprotodontia	ANCESTRAL SPECIES	20	ENSGT00940000163050	ENSGT00940000164787	ENSGT00950000182890.D.c.a.a.a.a.b	ENSGT01030000234558.D.b	ENSGT00940000154149.b.b	ENSGT00550000075110	ENSGT00940000159323	ENSGT00940000161246	ENSGT00940000160542	ENSGT00940000162643	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064	ENSGT00390000007919	ENSGT00390000003354 #20	ENSGT00390000001945 #22	ENSGT00960000190426	ENSGT00640000091578 #24	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00940000155412.b #27	ENSGT00940000164135 #28	ENSGT00390000005065 #29	ENSGT00940000160969 #30	ENSGT00530000064158 #31	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #32	ENSGT00390000005100.q #33	ENSGT00390000005100.r.b #33	ENSGT00390000005100.r.a #33	ENSGT01050000244887.A.a.a.b #34
Wallaby	MODERN SPECIES	3268																ENSMEUG00000015506 #22
Diprotodontia_a	ANCESTRAL SPECIES	16	ENSGT00940000163050	ENSGT00940000164787	ENSGT00950000182890.D.c.a.a.a.a.b	ENSGT01030000234558.D.b	ENSGT00940000154149.b.b	ENSGT00550000075110	ENSGT00940000159323	ENSGT00940000161246	ENSGT00940000160542	ENSGT00940000162643	ENSGT01050000244941.B.c	ENSGT00950000183110.a	ENSGT00550000075064	ENSGT00390000007919	ENSGT00390000003354 #20	ENSGT00390000001945 #22	ENSGT00960000190426	ENSGT00640000091578 #24	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00940000155412.b #27	ENSGT00940000164135 #28	ENSGT00390000005065 #29	ENSGT00940000160969 #30	ENSGT00530000064158 #31	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #32	ENSGT00390000005100.q #33	ENSGT00390000005100.r.b #33	ENSGT00390000005100.r.a #33	ENSGT01050000244887.A.a.a.b #34
Common wonbat	DUPLICATION
Common wonbat	DUPLICATION
Common wonbat	MODERN SPECIES	767																ENSVURG00010024970 #22
Common wonbat	MODERN SPECIES	741																ENSVURG00010017917 #22
Common wonbat	MODERN SPECIES	764	ENSVURG00010024890	ENSVURG00010024891	COLGALT1 (ENSVURG00010024893)	ENSVURG00010024895	PGLS (ENSVURG00010024896)	SLC27A1 (ENSVURG00010024898)	NXNL1 (ENSVURG00010024899)	MVB12A (ENSVURG00010024900)	PBX4 (ENSVURG00010024901)	LPAR2 (ENSVURG00010024902)	GMIP (ENSVURG00010024903)	ATP13A1 (ENSVURG00010024904)	CHCHD5 (ENSVURG00010024905)	ENSVURG00010024906	ENSVURG00010024907 #20	ENSVURG00010024908 #22	ENSVURG00010024910 #20	PIN1 (ENSVURG00010024911) #24	OLFM2 (ENSVURG00010024912) #25	COL5A3 (ENSVURG00010024913) #26	RDH8 (ENSVURG00010024914) #27	ENSVURG00010024915 #28	SHFL (ENSVURG00010024922) #29	ANGPTL6 (ENSVURG00010024924) #30	PPAN (ENSVURG00010024925) #31	P2RY11 (ENSVURG00010024926)	EIF3G (ENSVURG00010024928) #32	ENSVURG00010024929 #33	ENSVURG00010024933 #33	S1PR2 (ENSVURG00010024934) #34	MRPL4 (ENSVURG00010024936) #35
koala	DUPLICATION
koala	DUPLICATION
koala	MODERN SPECIES	28	CCK (ENSPCIG00000022691)	EIF1B (ENSPCIG00000016375)	ENSPCIG00000036948	ENSPCIG00000037453	ENSPCIG00000004556	ENSPCIG00000005026	ENSPCIG00000005018	ENSPCIG00000003822	ENSPCIG00000034043	ENSPCIG00000014355	TMC2 (ENSPCIG00000012572)	ENSPCIG00000012575	ENSPCIG00000012582	ENSPCIG00000036695	SLC25A38 (ENSPCIG00000007860)	ENSPCIG00000032234 #22	CCR8 (ENSPCIG00000036945)	CX3CR1 (ENSPCIG00000010400)	CCR4 (ENSPCIG00000010402)	GLB1 (ENSPCIG00000010406)	CRTAP (ENSPCIG00000010418)	SUSD5 (ENSPCIG00000003505)	ENSPCIG00000002097	ENSPCIG00000002108	CDK6 (ENSPCIG00000030740)	ENSPCIG00000026017	ENSPCIG00000034934	RBM48 (ENSPCIG00000026020)	ENSPCIG00000026021	PEX1 (ENSPCIG00000026024)	GATAD1 (ENSPCIG00000037007)
koala	MODERN SPECIES	295														PCDH10 (ENSPCIG00000026375)	ENSPCIG00000019848	ENSPCIG00000035602 #22
koala	MODERN SPECIES	24		ENSPCIG00000030856	ENSPCIG00000018511	ADCK1 (ENSPCIG00000031606)	SNW1 (ENSPCIG00000026811)	ENSPCIG00000026842	ALKBH1 (ENSPCIG00000026843)	SPTLC2 (ENSPCIG00000026846)	ENSPCIG00000026849	AHSA1 (ENSPCIG00000026852)	VIPAS39 (ENSPCIG00000026856)	NOXRED1 (ENSPCIG00000026865)	ENSPCIG00000026867	TMED8 (ENSPCIG00000026869)	GSTZ1 (ENSPCIG00000026873)	ENSPCIG00000036654 #22	POMT2 (ENSPCIG00000026881)	NGB (ENSPCIG00000026888)	TMEM63C (ENSPCIG00000026891)	ZDHHC22 (ENSPCIG00000026906)	CIPC (ENSPCIG00000034204)	IRF2BPL (ENSPCIG00000036236)	ANGEL1 (ENSPCIG00000026915)	ENSPCIG00000026920	ENSPCIG00000026922	VASH1 (ENSPCIG00000026927)	ESRRB (ENSPCIG00000036136)	GPATCH2L (ENSPCIG00000010391)	IFT43 (ENSPCIG00000002595)	TGFB3 (ENSPCIG00000002617)	ENSPCIG00000002659
koala	MODERN SPECIES	58	ENSPCIG00000030715	ENSPCIG00000018897	COLGALT1 (ENSPCIG00000018895)	ENSPCIG00000018889	PGLS (ENSPCIG00000018885)	SLC27A1 (ENSPCIG00000018882)	NXNL1 (ENSPCIG00000018880)	MVB12A (ENSPCIG00000018878)	PBX4 (ENSPCIG00000018874)	LPAR2 (ENSPCIG00000018871)	GMIP (ENSPCIG00000018867)	ATP13A1 (ENSPCIG00000018864)	CHCHD5 (ENSPCIG00000018860)	FBXL12 (ENSPCIG00000018856) #20	ENSPCIG00000037081	ENSPCIG00000018853 #22	PIN1 (ENSPCIG00000033231) #24	OLFM2 (ENSPCIG00000018847) #25	RDH8 (ENSPCIG00000018790) #27	SHFL (ENSPCIG00000018787) #29	ANGPTL6 (ENSPCIG00000033518) #30	PPAN (ENSPCIG00000018786) #31	P2RY11 (ENSPCIG00000018784)	EIF3G (ENSPCIG00000018783) #32	ENSPCIG00000033373 #33	ENSPCIG00000018782 #33	ENSPCIG00000018780 #33	S1PR2 (ENSPCIG00000018778) #34	MRPL4 (ENSPCIG00000033688) #35	ENSPCIG00000018769	ENSPCIG00000036585
Tasmanian devil	DUPLICATION
Tasmanian devil	MODERN SPECIES		ENSSHAG00000013568	ENSSHAG00000013059	ENSSHAG00000020902	ENSSHAG00000020939	ENSSHAG00000012223	ENSSHAG00000012038	SLC27A1 (ENSSHAG00000011850)	MVB12A (ENSSHAG00000027018)	NXNL1 (ENSSHAG00000022220)	ENSSHAG00000011298	ENSSHAG00000011222	ENSSHAG00000011113	ENSSHAG00000023300	ENSSHAG00000021526 #20	ENSSHAG00000021142 #22	ENSSHAG00000010974 #22	ENSSHAG00000010840 #24	OLFM2 (ENSSHAG00000010609) #25	ENSSHAG00000009911 #26	RDH8 (ENSSHAG00000026329) #27	ENSSHAG00000009636 #28	SHFL (ENSSHAG00000009453) #29	ANGPTL6 (ENSSHAG00000009395) #30	ENSSHAG00000009305 #31	EIF3G (ENSSHAG00000009231) #32	ENSSHAG00000024917 #33	ENSSHAG00000027218 #33	ENSSHAG00000008894 #33	S1PR2 (ENSSHAG00000028683) #34	MRPL4 (ENSSHAG00000008539) #35	ICAM5 (ENSSHAG00000032328)
Tasmanian devil	MODERN SPECIES		ENSSHAG00000021815	ENSSHAG00000013568	ENSSHAG00000013059	ENSSHAG00000020902	ENSSHAG00000020939	ENSSHAG00000012223	ENSSHAG00000012038	SLC27A1 (ENSSHAG00000011850)	MVB12A (ENSSHAG00000027018)	NXNL1 (ENSSHAG00000022220)	ENSSHAG00000011298	ENSSHAG00000011222	ENSSHAG00000011113	ENSSHAG00000023300	ENSSHAG00000021526 #20	ENSSHAG00000021142 #22	ENSSHAG00000010974 #22	ENSSHAG00000010840 #24	OLFM2 (ENSSHAG00000010609) #25	ENSSHAG00000009911 #26	RDH8 (ENSSHAG00000026329) #27	ENSSHAG00000009636 #28	SHFL (ENSSHAG00000009453) #29	ANGPTL6 (ENSSHAG00000009395) #30	ENSSHAG00000009305 #31	EIF3G (ENSSHAG00000009231) #32	ENSSHAG00000024917 #33	ENSSHAG00000027218 #33	ENSSHAG00000008894 #33	S1PR2 (ENSSHAG00000028683) #34	MRPL4 (ENSSHAG00000008539) #35
Opossum	DUPLICATION
Opossum	MODERN SPECIES	2	ENSMODG00000011626	TRMT1 (ENSMODG00000011619)	ENSMODG00000011593	NFIX (ENSMODG00000011587)	GADD45GIP1 (ENSMODG00000011545)	RAD23A (ENSMODG00000011539)	CALR (ENSMODG00000011530)	FARSA (ENSMODG00000011519)	ENSMODG00000043191	GCDH (ENSMODG00000011508)	KLF1 (ENSMODG00000011491)	DNASE2 (ENSMODG00000011483)	monDomV1R1219 (ENSMODG00000047743)	monDomV1R1220 (ENSMODG00000039528)	ENSMODG00000028680	ENSMODG00000023795 #22	ENSMODG00000045793	ENSMODG00000046640	ENSMODG00000006773	ENSMODG00000023794	ENSMODG00000023793	ENSMODG00000050748	ENSMODG00000006823	ENSMODG00000006837	TBXA2R (ENSMODG00000006844)	ENSMODG00000006869	HMG20B (ENSMODG00000006884)	MFSD12 (ENSMODG00000006897)	ENSMODG00000047578	FZR1 (ENSMODG00000006919)	DOHH (ENSMODG00000006927)
Opossum	MODERN SPECIES	2	ENSMODG00000005272	ENSMODG00000004306	COLGALT1 (ENSMODG00000004372)	ENSMODG00000004391	PGLS (ENSMODG00000004396)	SLC27A1 (ENSMODG00000004430)	ENSMODG00000004453	NXNL1 (ENSMODG00000004441)	PBX4 (ENSMODG00000004459)	LPAR2 (ENSMODG00000004466)	GMIP (ENSMODG00000004677)	ATP13A1 (ENSMODG00000004716)	CHCHD5 (ENSMODG00000024210)	ENSMODG00000024180	ENSMODG00000037657	ENSMODG00000037364 #22	PIN1 (ENSMODG00000004724) #24	OLFM2 (ENSMODG00000040695) #25	RDH8 (ENSMODG00000005019) #27	ENSMODG00000005107 #28	SHFL (ENSMODG00000005120) #29	ANGPTL6 (ENSMODG00000005137) #30	PPAN (ENSMODG00000005158) #31	P2RY11 (ENSMODG00000024209)	EIF3G (ENSMODG00000005173) #32	ENSMODG00000005463 #33	DNMT1 (ENSMODG00000048820) #33	S1PR2 (ENSMODG00000028318) #34	MRPL4 (ENSMODG00000005476) #35	ENSMODG00000028933	ICAM5 (ENSMODG00000040312)
Platypus	DUPLICATION
Platypus	MODERN SPECIES	19	ENSOANG00000048660	ORNANAV1R3259 (ENSOANG00000039262)	ENSOANG00000037075	ORNANAV1R3053 (ENSOANG00000040077)	ENSOANG00000047757	ENSOANG00000013609	ENSOANG00000051032	ENSOANG00000021879	ENSOANG00000022333	ORNANAV1R3189 (ENSOANG00000046058)	ENSOANG00000037160	ORNANAV1R3220 (ENSOANG00000044179)	ENSOANG00000008369	ENSOANG00000036138	ENSOANG00000036627	ENSOANG00000043395 #22	ORNANAV1R3181 (ENSOANG00000050539)	ORNANAV1R3043 (ENSOANG00000041644)	ENSOANG00000048489	ENSOANG00000040104	ENSOANG00000036090	ENSOANG00000039787	ENSOANG00000009664	ENSOANG00000014372	ENSOANG00000041955	ENSOANG00000005431	ENSOANG00000015609	ENSOANG00000012145	ENSOANG00000048818	ENSOANG00000043837	ENSOANG00000040269
Platypus	MODERN SPECIES	11	DBX2 (ENSOANG00000048487)	NELL2 (ENSOANG00000044895)	TMEM117 (ENSOANG00000001738)	TWF1 (ENSOANG00000007091)	IRAK4 (ENSOANG00000001905)	PUS7L (ENSOANG00000021234)	ADAMTS20 (ENSOANG00000004962)	PRICKLE1 (ENSOANG00000011364)	PPHLN1 (ENSOANG00000041653)	ZCRB1 (ENSOANG00000038392)	YAF2 (ENSOANG00000050454)	GXYLT1 (ENSOANG00000003428)	PDZRN4 (ENSOANG00000003429)	CNTN1 (ENSOANG00000007366)	LRRK2 (ENSOANG00000011237)	ENSOANG00000042749 #22	SLC2A13 (ENSOANG00000039346)	ENSOANG00000044709	ABCD2 (ENSOANG00000040062)	KIF21A (ENSOANG00000014507)	ENSOANG00000031156	CPNE8 (ENSOANG00000002877)	ENSOANG00000038075	TPRKB (ENSOANG00000050189)	SYT10 (ENSOANG00000038829)	ENSOANG00000043805	PKP2 (ENSOANG00000020593)	ENSOANG00000047335	DNM1L (ENSOANG00000008924)	FGD4 (ENSOANG00000004404)	ENSOANG00000039362
Sauria	ANCESTRAL SPECIES	22	ENSGT01030000234558.D.b	ENSGT00940000154149.b.b	ENSGT00550000075110	ENSGT00940000159323	ENSGT00940000161246	ENSGT00950000183110.a	ENSGT01050000244941.B.c	ENSGT00940000162643	ENSGT00390000011347	ENSGT00940000160542	ENSGT00550000075064	ENSGT00390000007919	ENSGT00940000165858	ENSGT00940000162906.c.b	ENSGT00390000003354 #20	ENSGT00390000001945 #22	ENSGT00640000091578 #24	ENSGT00940000161852.y.b	ENSGT00940000159148 #25	ENSGT00940000154535.B	ENSGT00390000005100 #33	ENSGT00940000172524	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000159005	ENSGT00470000042444	ENSGT00940000161143	ENSGT00940000160550	ENSGT00940000159869	ENSGT00390000013443.c	ENSGT00940000159788.b
Archelosauria	ANCESTRAL SPECIES	40	ENSGT01030000234558.D.b	ENSGT00940000154149.b.b	ENSGT00550000075110	ENSGT00940000159323	ENSGT00940000161246	ENSGT00950000183110.a	ENSGT01050000244941.B.c	ENSGT00940000162643	ENSGT00390000011347	ENSGT00940000160542	ENSGT00550000075064	ENSGT00390000007919	ENSGT00940000165858	ENSGT00940000162906.c.b	ENSGT00390000003354 #20	ENSGT00390000001945 #22	ENSGT00640000091578 #24	ENSGT00940000161852.y.b	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00940000154535.C	ENSGT00940000155412.b #27	ENSGT00390000005100 #33	ENSGT00940000172524	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000159005	ENSGT00470000042444	ENSGT00940000161143	ENSGT00940000160550	ENSGT00940000159869
Cryptodira	ANCESTRAL SPECIES	45	ENSGT01030000234558.D.b	ENSGT00940000154149.b.b	ENSGT00550000075110	ENSGT00940000159323	ENSGT00940000161246	ENSGT00950000183110.a	ENSGT01050000244941.B.c	ENSGT00940000162643	ENSGT00390000011347	ENSGT00940000160542	ENSGT00550000075064	ENSGT00390000007919	ENSGT00940000165858	ENSGT00940000162906.c.b	ENSGT00390000003354 #20	ENSGT00390000001945 #22	ENSGT00640000091578 #24	ENSGT00940000161852.y.b	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT00940000172524	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000159005	ENSGT00470000042444	ENSGT00940000161143	ENSGT00940000160550	ENSGT00940000159869	ENSGT00390000013443.c
Testudinoidea	ANCESTRAL SPECIES	38	ENSGT01030000234558.D.b	ENSGT00940000154149.b.b	ENSGT00550000075110	ENSGT00940000159323	ENSGT00940000161246	ENSGT00950000183110.a	ENSGT01050000244941.B.c	ENSGT00940000162643	ENSGT00390000011347	ENSGT00940000160542	ENSGT00550000075064	ENSGT00390000007919	ENSGT00940000165858	ENSGT00940000162906.c.b	ENSGT00390000003354 #20	ENSGT00390000001945 #22	ENSGT00640000091578 #24	ENSGT00940000161852.y.b	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT00940000172524	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000159005.s.b.b	ENSGT00940000159005.s.a.b	ENSGT00470000042444	ENSGT00940000161143	ENSGT00940000160550	ENSGT00940000159869
Testudinidae	ANCESTRAL SPECIES	89	ENSGT01030000234558.D.b	ENSGT00940000154149.b.b	ENSGT00550000075110	ENSGT00940000159323	ENSGT00940000161246	ENSGT00950000183110.a	ENSGT01050000244941.B.c	ENSGT00940000162643	ENSGT00390000011347	ENSGT00940000160542	ENSGT00550000075064	ENSGT00390000007919	ENSGT00940000165858	ENSGT00940000162906.c.b	ENSGT00390000003354 #20	ENSGT00390000001945 #22	ENSGT00640000091578 #24	ENSGT00940000161852.y.b	ENSGT00940000159148 #25
Abingdon island giant tortoise	MODERN SPECIES	841			ENSCABG00000021308	ENSCABG00000021310	NXNL1 (ENSCABG00000021311)	GMIP (ENSCABG00000021313)	LPAR2 (ENSCABG00000021314)	PBX4 (ENSCABG00000021317)	DSN1 (ENSCABG00000021320)	MVB12A (ENSCABG00000021322)	ATP13A1 (ENSCABG00000021336)	ENSCABG00000021345	ENSCABG00000021346	ENSCABG00000021347	FBXL12 (ENSCABG00000021348) #20	UBL5 (ENSCABG00000021349) #22	PIN1 (ENSCABG00000021350) #24	ENSCABG00000021351	SHISA2 (ENSCABG00000021352)	ENSCABG00000021353	ENSCABG00000021355
Goode s thornscrub tortoise	MODERN SPECIES	178	COLGALT1 (ENSGEVG00005021163)	ENSGEVG00005021168	PGLS (ENSGEVG00005021176)	SLC27A1 (ENSGEVG00005021177)	NXNL1 (ENSGEVG00005021182)	GMIP (ENSGEVG00005021187)	LPAR2 (ENSGEVG00005021199)	PBX4 (ENSGEVG00005021203)	DSN1 (ENSGEVG00005021209)	ENSGEVG00005014055	ATP13A1 (ENSGEVG00005014134)	CHCHD5 (ENSGEVG00005014195)	ENSGEVG00005014254	ENSGEVG00005014499	FBXL12 (ENSGEVG00005014521) #20	UBL5 (ENSGEVG00005014544) #22	PIN1 (ENSGEVG00005014565) #24	ENSGEVG00005014588	OLFM2 (ENSGEVG00005014670) #25
Emydidae	ANCESTRAL SPECIES	48	ENSGT01030000234558.D.b	ENSGT00940000154149.b.b	ENSGT00550000075110	ENSGT00940000159323	ENSGT00940000161246	ENSGT00950000183110.a	ENSGT01050000244941.B.c	ENSGT00940000162643	ENSGT00390000011347	ENSGT00940000160542	ENSGT00550000075064	ENSGT00390000007919	ENSGT00940000165858	ENSGT00940000162906.c.b	ENSGT00390000003354 #20	ENSGT00390000001945 #22	ENSGT00640000091578 #24	ENSGT00940000161852.y.b	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT00940000172524	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000159005.s.a.a	ENSGT00940000159005.s.a.b	ENSGT00470000042444	ENSGT00940000161143	ENSGT00940000160550	ENSGT00940000159869
painted turtle	MODERN SPECIES	1001	ENSCPBG00000014215	ENSCPBG00000014217	ENSCPBG00000014220	PGLS (ENSCPBG00000014223)	SLC27A1 (ENSCPBG00000014224)	NXNL1 (ENSCPBG00000014227)	GMIP (ENSCPBG00000014229)	LPAR2 (ENSCPBG00000014231)	PBX4 (ENSCPBG00000014233)	DSN1 (ENSCPBG00000014236)	ENSCPBG00000014238	ATP13A1 (ENSCPBG00000014270)	ENSCPBG00000014511	ENSCPBG00000014514	FBXL12 (ENSCPBG00000014516) #20	UBL5 (ENSCPBG00000014517) #22	PIN1 (ENSCPBG00000014519) #24	ENSCPBG00000014523	OLFM2 (ENSCPBG00000014527) #25	ENSCPBG00000014529 #26	ENSCPBG00000014536	ENSCPBG00000014541	RDH8 (ENSCPBG00000014547) #27
Archosauria	ANCESTRAL SPECIES	34	ENSGT01030000234558.D.b	ENSGT00940000154149.b.b	ENSGT00550000075110	ENSGT00940000159323	ENSGT00940000161246	ENSGT00950000183110.a	ENSGT01050000244941.B.c	ENSGT00940000162643	ENSGT00390000011347	ENSGT00940000160542	ENSGT00550000075064	ENSGT00390000007919	ENSGT00940000165858	ENSGT00940000162906.c.b	ENSGT00390000003354 #20	ENSGT00390000001945 #22	ENSGT00640000091578 #24	ENSGT00940000161852.y.b	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00940000154535.C	ENSGT00940000155412.b #27	ENSGT00530000064158 #31	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000159005	ENSGT00940000161143	ENSGT00940000160550
Aves	ANCESTRAL SPECIES	34	ENSGT01030000234558.D.b	ENSGT00940000154149.b.b	ENSGT00550000075110	ENSGT00940000159323	ENSGT00940000161246	ENSGT00950000183110.a	ENSGT01050000244941.B.c	ENSGT00940000162643	ENSGT00390000011347	ENSGT00940000160542	ENSGT00550000075064	ENSGT00390000007919	ENSGT00940000165858	ENSGT00940000162906.c.b	ENSGT00390000003354 #20	ENSGT00390000001945 #22	ENSGT00960000190426	ENSGT00640000091578 #24	ENSGT00940000161852.y.b	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00940000154535.C	ENSGT00940000155412.b #27	ENSGT00530000064158 #31	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000159005	ENSGT00940000161143
Neognathae	ANCESTRAL SPECIES	34	ENSGT01030000234558.D.b	ENSGT00940000154149.b.b	ENSGT00550000075110	ENSGT00940000159323	ENSGT00940000161246	ENSGT00950000183110.a	ENSGT01050000244941.B.c	ENSGT00940000162643	ENSGT00390000011347	ENSGT00940000160542	ENSGT00550000075064	ENSGT00390000007919	ENSGT00940000165858	ENSGT00940000162906.c.b	ENSGT00390000003354 #20	ENSGT00390000001945 #22	ENSGT00960000190426	ENSGT00640000091578 #24	ENSGT00940000161852.y.b	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00940000154535.C	ENSGT00940000155412.b #27	ENSGT00530000064158 #31	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000159005.p	ENSGT00940000161143
Neognathae_b	ANCESTRAL SPECIES	36											ENSGT00980000198723	ENSGT00950000182975.a.b	ENSGT00940000165858	ENSGT00940000162906.c.b	ENSGT00390000003354 #20	ENSGT00390000001945 #22	ENSGT00640000091578 #24	ENSGT00940000161852.y.b	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00940000154535.C	ENSGT00940000155412.b #27	ENSGT00530000064158.l #31	ENSGT01030000234518.C.a.a	ENSGT00530000064158.k #31	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000159005.p	ENSGT00940000161143
Passeriformes	ANCESTRAL SPECIES	97												ENSGT00940000158914	ENSGT00530000063936.a	ENSGT00940000159684	ENSGT00980000199422	ENSGT00390000001945 #22
Passeriformes_d	ANCESTRAL SPECIES	92												ENSGT00940000158914	ENSGT00530000063936.a	ENSGT00940000159684	ENSGT00980000199422	ENSGT00390000001945 #22
Passeriformes_g	ANCESTRAL SPECIES	102												ENSGT00940000158914	ENSGT00530000063936.a	ENSGT00940000159684	ENSGT00980000199422	ENSGT00390000001945 #22
Passeroidea	ANCESTRAL SPECIES	107												ENSGT00940000158914	ENSGT00530000063936.a	ENSGT00940000159684	ENSGT00980000199422	ENSGT00390000001945 #22
Zebra finch	DUPLICATION
Zebra finch	MODERN SPECIES	24	ENSTGUG00000020258	ENSTGUG00000027322	ENSTGUG00000026474	ENSTGUG00000029011	ENSTGUG00000027329	ENSTGUG00000023658	ENSTGUG00000027998	ENSTGUG00000018413	ENSTGUG00000020451	ENSTGUG00000023462	ENSTGUG00000016876	ENSTGUG00000027608	ENSTGUG00000025077	ENSTGUG00000023889	ENSTGUG00000024177	ENSTGUG00000027876 #22
Zebra finch	MODERN SPECIES	24	ENSTGUG00000020451	ENSTGUG00000018413	ENSTGUG00000027998	ENSTGUG00000023658	ENSTGUG00000027329	ENSTGUG00000029011	ENSTGUG00000026474	ENSTGUG00000027322	ENSTGUG00000020258	ENSTGUG00000019726	ENSTGUG00000022883	ENSTGUG00000022243	ENSTGUG00000019233	ENSTGUG00000026670	ENSTGUG00000025465	ENSTGUG00000019157 #22	ENSTGUG00000023637	ENSTGUG00000026867	ENSTGUG00000022079	ENSTGUG00000022595	ENSTGUG00000026107	XAB2 (ENSTGUG00000029015)	ENSTGUG00000020304	PCP2 (ENSTGUG00000018878)	TRAPPC5 (ENSTGUG00000023204)	NDUFB7 (ENSTGUG00000019936)	TECR (ENSTGUG00000029298)	DNAJB1 (ENSTGUG00000028620)	ENSTGUG00000026029	ENSTGUG00000026606	C3 (ENSTGUG00000026277)
Great tit	MODERN SPECIES	287													MAP2K7 (ENSPMJG00000002457)	ENSPMJG00000002448	ENSPMJG00000002445	UBL5 (ENSPMJG00000002443) #22	ENSPMJG00000002415	ENSPMJG00000002407	EMC10 (ENSPMJG00000002345)	ENSPMJG00000002340	XAB2 (ENSPMJG00000002318)	PCP2 (ENSPMJG00000002303)	TRAPPC5 (ENSPMJG00000002296)	ENSPMJG00000002286	TECR (ENSPMJG00000002272)	GIPC1 (ENSPMJG00000002256)	EVI5L (ENSPMJG00000002230)	ENSPMJG00000002223	ENSPMJG00000002203
Neognathae_c	ANCESTRAL SPECIES	38	ENSGT01030000234558.D.b	ENSGT00940000154149.b.b	ENSGT00550000075110	ENSGT00940000159323	ENSGT00940000161246	ENSGT00950000183110.a	ENSGT01050000244941.B.c	ENSGT00940000162643	ENSGT00390000011347	ENSGT00940000160542	ENSGT00550000075064	ENSGT00390000007919	ENSGT00940000165858	ENSGT00940000162906.c.b	ENSGT00390000003354 #20	ENSGT00390000001945 #22	ENSGT00640000091578 #24	ENSGT00940000161852.y.b	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00940000154535.C	ENSGT00940000155412.b #27	ENSGT00530000064158.l #31	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34	ENSGT00390000014512 #35	ENSGT00940000175590	ENSGT00940000161143	ENSGT00940000160550
Golden eagle	MODERN SPECIES	2	COLGALT1 (ENSACCG00020005751)	NIBAN3 (ENSACCG00020005766)	PGLS (ENSACCG00020005808)	SLC27A1 (ENSACCG00020005825)	NXNL1 (ENSACCG00020005843)	GMIP (ENSACCG00020005892)	LPAR2 (ENSACCG00020005908)	PBX4 (ENSACCG00020005921)	DSN1 (ENSACCG00020005962)	ENSACCG00020005981	ATP13A1 (ENSACCG00020006018)	CHCHD5 (ENSACCG00020000510)	ENSACCG00020000545	ENSACCG00020000577	FBXL12 (ENSACCG00020000604) #20	UBL5 (ENSACCG00020000623) #22	PIN1 (ENSACCG00020000647) #24	ENSACCG00020000673	OLFM2 (ENSACCG00020000706) #25	ENSACCG00020000734 #26	ENSACCG00020000752	RDH8 (ENSACCG00020000817) #27	PPAN (ENSACCG00020000838) #31	P2RY11 (ENSACCG00020000867)	EIF3G (ENSACCG00020000893) #32	DNMT1 (ENSACCG00020001053) #33	MRPL4 (ENSACCG00020001344) #35	S1PR2 (ENSACCG00020001362) #34	ENSACCG00020001376	ENSACCG00020001398	ENSACCG00020001437
Kakapo	MODERN SPECIES	73	PRKCSH (ENSSHBG00005017090)	COLGALT1 (ENSSHBG00005017082)	PGLS (ENSSHBG00005017077)	SLC27A1 (ENSSHBG00005017073)	NXNL1 (ENSSHBG00005017070)	GMIP (ENSSHBG00005017062)	LPAR2 (ENSSHBG00005017053)	PBX4 (ENSSHBG00005017050)	ENSSHBG00005017042	MVB12A (ENSSHBG00005017030)	ATP13A1 (ENSSHBG00005016793)	CHCHD5 (ENSSHBG00005016736)	ENSSHBG00005016729	ENSSHBG00005016725	FBXL12 (ENSSHBG00005016723) #20	UBL5 (ENSSHBG00005016718) #22	PIN1 (ENSSHBG00005016716) #24	ENSSHBG00005016711	OLFM2 (ENSSHBG00005016706) #25	ENSSHBG00005016696 #26	ENSSHBG00005016691	RDH8 (ENSSHBG00005016683) #27	PPAN (ENSSHBG00005016676) #31	EIF3G (ENSSHBG00005016670) #32	DNMT1 (ENSSHBG00005014896) #33	S1PR2 (ENSSHBG00005014775) #34	MRPL4 (ENSSHBG00005014769) #35	S1PR5 (ENSSHBG00005014763) ##34	KEAP1 (ENSSHBG00005014757)	PDE4A (ENSSHBG00005014607)	CDC37 (ENSSHBG00005014562)
Galloanserae	ANCESTRAL SPECIES	47			ENSGT00550000075110	ENSGT00940000159323	ENSGT00940000161246	ENSGT00950000183110.a	ENSGT01050000244941.B.c	ENSGT00940000162643	ENSGT00390000011347	ENSGT00940000160542	ENSGT00550000075064	ENSGT00390000007919	ENSGT00940000165858	ENSGT00940000164508	ENSGT00390000003354 #20	ENSGT00390000001945 #22	ENSGT00960000190426	ENSGT00640000091578 #24	ENSGT00940000161852.y.b	ENSGT00940000159148 #25	ENSGT00940000155412.b #27	ENSGT00530000064158 #31	ENSGT01030000234518.C.a.a	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34
Phasianidae	ANCESTRAL SPECIES	38		ENSGT00550000075110	ENSGT00940000159323	ENSGT00940000161246	ENSGT00950000183110.a	ENSGT01050000244941.B.c	ENSGT00940000162643	ENSGT00390000011347	ENSGT00940000160542	ENSGT00550000075064	ENSGT00390000007919	ENSGT00940000165858	ENSGT01030000234575.d	ENSGT00990000210697	ENSGT00390000003354 #20	ENSGT00390000001945 #22	ENSGT00640000091578 #24	ENSGT00940000159148 #25	ENSGT00940000155412.b #27	ENSGT00530000064158 #31	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34
Phasianidae_b	ANCESTRAL SPECIES	48						ENSGT01050000244941.B.c	ENSGT00940000162643	ENSGT00390000011347	ENSGT00940000160542	ENSGT00550000075064	ENSGT00390000007919	ENSGT00940000165858	ENSGT01030000234575.d	ENSGT00990000210697	ENSGT00390000003354 #20	ENSGT00390000001945 #22	ENSGT00640000091578 #24	ENSGT00940000159148 #25	ENSGT00940000155412.b #27	ENSGT00530000064158 #31	ENSGT00510000047802 #32	ENSGT00390000005100 #33	ENSGT01050000244887.A.a.a.b #34
Chicken	MODERN SPECIES	23	ENSGALG00010003208	ENSGALG00010003211	ENSGALG00010003245	MRI1 (ENSGALG00010003248)	YJU2B (ENSGALG00010003249)	MAST1 (ENSGALG00010002518)	LPAR2 (ENSGALG00010002533)	PBX4 (ENSGALG00010002547)	DSN1 (ENSGALG00010003968)	MVB12A (ENSGALG00010002573)	ATP13A1 (ENSGALG00010002581)	ENSGALG00010002597	ENSGALG00010002606	ENSGALG00010002629	FBXL12 (ENSGALG00010002658) #20	UBL5 (ENSGALG00010002682) #22	PIN1 (ENSGALG00010002703) #24	OLFM2 (ENSGALG00010002713) #25	RDH8 (ENSGALG00010002733) #27	PPAN (ENSGALG00010002762) #31	EIF3G (ENSGALG00010002781) #32	DNMT1 (ENSGALG00010002837) #33	S1PR2 (ENSGALG00010002908) #34	ELOF1 (ENSGALG00010003251)	ACP5 (ENSGALG00010003260)	NFIX (ENSGALG00010003273)	ENSGALG00010003279	GADD45GIP1 (ENSGALG00010003292)	RAD23A (ENSGALG00010003299)	CALR (ENSGALG00010003305)	FARSA (ENSGALG00010003352)
Anatidae	ANCESTRAL SPECIES	95			ENSGT00550000075110	ENSGT00940000159323	ENSGT00940000161246	ENSGT00950000183110.a	ENSGT01050000244941.B.c	ENSGT00940000162643	ENSGT00390000011347	ENSGT00940000160542	ENSGT00550000075064	ENSGT00390000007919	ENSGT00940000165858	ENSGT00940000164508	ENSGT00390000003354 #20	ENSGT00390000001945 #22	ENSGT00960000190426	ENSGT00640000091578 #24	ENSGT00940000161852.y.b	ENSGT00940000159148 #25
Pink-footed goose	MODERN SPECIES	441			PGLS (ENSABRG00000003246)	SLC27A1 (ENSABRG00000003217)	NXNL1 (ENSABRG00000003211)	GMIP (ENSABRG00000003158)	LPAR2 (ENSABRG00000003146)	PBX4 (ENSABRG00000003128)	ENSABRG00000003114	ENSABRG00000003103	ATP13A1 (ENSABRG00000003080)	CHCHD5 (ENSABRG00000003013)	ENSABRG00000002999	ENSABRG00000002983	ENSABRG00000002950	UBL5 (ENSABRG00000002933) #22	ENSABRG00000002926	PIN1 (ENSABRG00000002911) #24	ENSABRG00000002897	OLFM2 (ENSABRG00000002873) #25
Duck	MODERN SPECIES	2423					PGLS (ENSAPLG00000011844)	SLC27A1 (ENSAPLG00000011847)	ENSAPLG00000017811	LPAR2 (ENSAPLG00000012802)	PBX4 (ENSAPLG00000012834)	DSN1 (ENSAPLG00000012996)	ATP13A1 (ENSAPLG00000013387)	CHCHD5 (ENSAPLG00000002165)	ENSAPLG00000014203	ENSAPLG00000014336	FBXL12 (ENSAPLG00000021099) #20	UBL5 (ENSAPLG00000014340) #22	PIN1 (ENSAPLG00000014344) #24
Lepidosauria	ANCESTRAL SPECIES	109	ENSGT01030000234558.D.b	ENSGT00550000075110	ENSGT00940000159323	ENSGT00940000161246	ENSGT00950000183110.a	ENSGT01050000244941.B.c	ENSGT00940000162643	ENSGT00390000011347	ENSGT00940000160542	ENSGT00550000075064	ENSGT00390000007919	ENSGT00940000165858	ENSGT00940000162906.c.b	ENSGT00990000210697	ENSGT00390000003354 #20	ENSGT00390000001945 #22	ENSGT00640000091578 #24	ENSGT00940000161852.y.b	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00940000154535.C	ENSGT00940000155412.b #27
Episquamata	ANCESTRAL SPECIES	4	ENSGT00940000159323	ENSGT00940000161246	ENSGT00950000183110.a	ENSGT01050000244941.B.c	ENSGT00940000162643	ENSGT00390000011347	ENSGT00940000160542	ENSGT00550000075064	ENSGT00390000007919	ENSGT00940000165858	ENSGT00940000162906.c.b.a.b	ENSGT01030000234575.d	ENSGT00940000162906.c.b.b	ENSGT00940000162906.c.b.a.a	ENSGT00390000003354 #20	ENSGT00390000001945 #22	ENSGT00640000091578 #24	ENSGT00940000161852.y.b	ENSGT00940000159148 #25	ENSGT00940000154535.B	ENSGT00940000159065	ENSGT00390000002307	ENSGT00940000159931	ENSGT00940000154126.h.a	ENSGT00530000063825.B	ENSGT00940000160217	ENSGT00940000160763	ENSGT00940000161232	ENSGT00940000160712	ENSGT00390000016619.b	ENSGT00940000164745.c.a
Laterata	ANCESTRAL SPECIES	1	ENSGT00550000075110	ENSGT00940000159323	ENSGT00940000161246	ENSGT00950000183110.a	ENSGT01050000244941.B.c	ENSGT00940000162643	ENSGT00390000011347	ENSGT00940000160542	ENSGT00550000075064	ENSGT00390000007919	ENSGT00940000165858	ENSGT00940000162906.c.b.a.b	ENSGT01030000234575.d	ENSGT00990000210697	ENSGT00390000003354 #20	ENSGT00390000001945 #22	ENSGT01030000235049	ENSGT00640000091578 #24	ENSGT00940000161852.y.b	ENSGT00940000159148 #25	ENSGT00940000154535.C	ENSGT00940000155412.b #27	ENSGT01100000263474.a.b.b.j.b.b.b.a.b.a	ENSGT00940000159065	ENSGT00390000002307	ENSGT00940000159931	ENSGT00940000154126.h.a	ENSGT00530000063825.B	ENSGT00940000160217	ENSGT00940000160763	ENSGT00940000161232
Common wall lizard	MODERN SPECIES	10	ENSPMRG00000007054	ENSPMRG00000007060	NXNL1 (ENSPMRG00000007061)	ENSPMRG00000007070	LPAR2 (ENSPMRG00000007071)	PBX4 (ENSPMRG00000007077)	ENSPMRG00000007096	ATP13A1 (ENSPMRG00000007104)	CHCHD5 (ENSPMRG00000007125)	ENSPMRG00000007137	ENSPMRG00000007164	ENSPMRG00000007180	ENSPMRG00000007187	ENSPMRG00000007195	FBXL12 (ENSPMRG00000007198) #20	UBL5 (ENSPMRG00000007209) #22	ENSPMRG00000007214	PIN1 (ENSPMRG00000007220) #24	ENSPMRG00000007236	OLFM2 (ENSPMRG00000007242) #25	ENSPMRG00000007254	ENSPMRG00000007274	RDH8 (ENSPMRG00000007284) #27	ENSPMRG00000007295	ENSPMRG00000007301	ENSPMRG00000007306	H3C13 (ENSPMRG00000007311)	ENSPMRG00000007315	ENSPMRG00000007324	ENSPMRG00000007330	ENSPMRG00000007336
Toxicofera	ANCESTRAL SPECIES	19	ENSGT00940000159323	ENSGT00940000161246	ENSGT00950000183110.a	ENSGT01050000244941.B.c	ENSGT00940000162643	ENSGT00390000011347	ENSGT00940000160542	ENSGT00550000075064	ENSGT00390000007919	ENSGT00940000165858	ENSGT00940000162906.c.b.a.b	ENSGT01030000234575.d	ENSGT00940000162906.c.b.b	ENSGT00940000162906.c.b.a.a	ENSGT00390000003354 #20	ENSGT00390000001945 #22	ENSGT00640000091578 #24	ENSGT00940000161852.y.b	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00940000154535.C	ENSGT01000000214708	ENSGT00940000167399.a	ENSGT00940000153092.a.b	ENSGT01060000248528.b.kh	ENSGT01100000263474.a.b.b.j.b.b.b.a.a.a.a.b.b.a.a	ENSGT00940000153118.db.b	ENSGT01060000248528.b.jh.a.a.b	ENSGT01100000263567.a.b	ENSGT01100000263504.a.b.b.b.a.a	ENSGT00950000183089
Lizard	DUPLICATION
Lizard	MODERN SPECIES	812	ENSACAG00000005014	PGLS (ENSACAG00000005002)	ENSACAG00000042149	ENSACAG00000004910	NXNL1 (ENSACAG00000004907)	GMIP (ENSACAG00000004868)	ENSACAG00000004860	PBX4 (ENSACAG00000004770)	ENSACAG00000045463	ENSACAG00000004718	ENSACAG00000004623	ENSACAG00000004621	ENSACAG00000004557	ENSACAG00000041310	ENSACAG00000004547 #20	ENSACAG00000045446 #22	PIN1 (ENSACAG00000042713) #24	ENSACAG00000044484 #20	ENSACAG00000041929	OLFM2 (ENSACAG00000004487) #25	ENSACAG00000034633	ENSACAG00000004055
Lizard	MODERN SPECIES	1	HSDL2 (ENSACAG00000017353)	PTBP3 (ENSACAG00000017316)	SUSD1 (ENSACAG00000022560)	UGCG (ENSACAG00000017299)	ENSACAG00000014828	COCH (ENSACAG00000014832)	ENSACAG00000034657	STRN3 (ENSACAG00000014886)	AP4S1 (ENSACAG00000015092)	HECTD1 (ENSACAG00000015118)	HEATR5A (ENSACAG00000015177)	DTD2 (ENSACAG00000015281)	NUBPL (ENSACAG00000015286)	ENSACAG00000029681	ARHGAP5 (ENSACAG00000002726)	ENSACAG00000044565 #22	AKAP6 (ENSACAG00000002643)	ENSACAG00000036757	NPAS3 (ENSACAG00000002620)	EGLN3 (ENSACAG00000040138)	SPTSSA (ENSACAG00000044505)	EAPP (ENSACAG00000040323)	SNX6 (ENSACAG00000002409)	CFL2 (ENSACAG00000002385)	ENSACAG00000035722	BAZ1A (ENSACAG00000002328)	ENSACAG00000002294	ENSACAG00000002103	FAM177A1 (ENSACAG00000024339)	PPP2R3C (ENSACAG00000002011)	PRORP (ENSACAG00000001929)
Elapidae	ANCESTRAL SPECIES	2	ENSGT00550000075110	ENSGT00940000159323	ENSGT00940000161246	ENSGT00950000183110.a	ENSGT01050000244941.B.c	ENSGT00940000162643	ENSGT00390000011347	ENSGT00940000160542	ENSGT00550000075064	ENSGT00390000007919	ENSGT00940000165858.a	ENSGT00940000162906.c.b.a.b	ENSGT01030000234575.d	ENSGT00990000210697	ENSGT00390000003354 #20	ENSGT00390000001945 #22	ENSGT00640000091578 #24	ENSGT00940000161852.y.b	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00940000154535.C	ENSGT01000000214708	ENSGT00940000167399.a	ENSGT00940000161385	ENSGT01060000248528.b.kh	ENSGT01100000263506.a	ENSGT00940000153125.D	ENSGT01010000230061	ENSGT01100000263474.a.b.b.j.b.b.b.a.b.a.a.a	ENSGT00940000160426	ENSGT01100000263559.B
Indian cobra	MODERN SPECIES	1	ENSNNAG00000005888	PGLS (ENSNNAG00000005874)	SLC27A1 (ENSNNAG00000005331)	NXNL1 (ENSNNAG00000005260)	GMIP (ENSNNAG00000004694)	LPAR2 (ENSNNAG00000004598)	PBX4 (ENSNNAG00000004444)	ENSNNAG00000004413	ATP13A1 (ENSNNAG00000004315)	CHCHD5 (ENSNNAG00000004294)	ENSNNAG00000004251	ENSNNAG00000004184	ENSNNAG00000004165	ENSNNAG00000004151	FBXL12 (ENSNNAG00000004138) #20	UBL5 (ENSNNAG00000004123) #22	PIN1 (ENSNNAG00000004077) #24	ENSNNAG00000004055	OLFM2 (ENSNNAG00000004038) #25	ENSNNAG00000004010	ENSNNAG00000003993	ENSNNAG00000003983	ENSNNAG00000003973	ENSNNAG00000003970	ENSNNAG00000003960	ENSNNAG00000003953	ENSNNAG00000003948	ENSNNAG00000003930	HDAC7 (ENSNNAG00000003661)	ENSNNAG00000003605	SLC48A1 (ENSNNAG00000003594)
Elapidae_a	ANCESTRAL SPECIES	52	ENSGT01030000234558.D.b	ENSGT00550000075110	ENSGT00940000159323	ENSGT00940000161246	ENSGT00950000183110.a	ENSGT01050000244941.B.c	ENSGT00940000162643	ENSGT00390000011347	ENSGT00940000160542	ENSGT00550000075064	ENSGT00390000007919	ENSGT00940000165858.a	ENSGT00940000162906.c.b.a.b	ENSGT00940000162906.c.b.a.a	ENSGT00390000003354 #20	ENSGT00390000001945 #22	ENSGT00640000091578 #24	ENSGT00940000161852.y.b	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00940000154535.C	ENSGT01000000214708	ENSGT00940000167399.a	ENSGT00510000050353	ENSGT01100000263474.a.b.b.j.b.b.b.a.a.a.a.b.a	ENSGT01100000263474.a.b.b.j.b.b.b.a.a.a.a.b.b.a.a.b	ENSGT01060000248528.b.kh	ENSGT01100000263474.a.b.b.j.b.b.b.a.a.a.a.b.b.a.b	ENSGT01100000263474.a.b.b.j.b.b.b.a.b.a.a.a	ENSGT00940000160426	ENSGT01100000263559.B
Blue-lipped sea krait	MODERN SPECIES	5129															ENSLLTG00000011513	UBL5 (ENSLLTG00000011525) #22
Acanthophiinae	ANCESTRAL SPECIES	52	ENSGT00550000075110	ENSGT00940000159323	ENSGT00940000161246	ENSGT00950000183110.a	ENSGT01050000244941.B.c	ENSGT00940000162643	ENSGT00940000160542	ENSGT00550000075064	ENSGT00390000007919	ENSGT00940000165858.a	ENSGT00940000162906.c.b.a.b	ENSGT00960000192668	ENSGT00940000162906.c.b.b	ENSGT00940000162906.c.b.a.a	ENSGT00390000003354 #20	ENSGT00390000001945 #22	ENSGT00640000091578 #24	ENSGT00940000161852.y.b	ENSGT00940000159148 #25	ENSGT00940000162394 #26	ENSGT00940000154535.C	ENSGT01000000214708	ENSGT00940000167399.a	ENSGT00510000050353	ENSGT01100000263474.a.b.b.j.b.b.b.a.a.a.a.b.a	ENSGT01100000263474.a.b.b.j.b.b.b.a.a.a.a.b.b.a.a.b	ENSGT01060000248528.b.kh	ENSGT01100000263474.a.b.b.j.b.b.b.a.a.a.a.b.b.a.a.a	ENSGT00940000153125.D.e.b	ENSGT01100000263474.a.b.b.j.b.b.b.a.b.a.a.a	ENSGT00940000160426
Mainland tiger snake	MODERN SPECIES	57	PGLS (ENSNSUG00000000292)	SLC27A1 (ENSNSUG00000000303)	NXNL1 (ENSNSUG00000000316)	GMIP (ENSNSUG00000000319)	LPAR2 (ENSNSUG00000000341)	PBX4 (ENSNSUG00000000365)	ENSNSUG00000000372	ATP13A1 (ENSNSUG00000000380)	CHCHD5 (ENSNSUG00000000858)	ENSNSUG00000000869	ENSNSUG00000000873	ENSNSUG00000000876	ENSNSUG00000000889	ENSNSUG00000000892	FBXL12 (ENSNSUG00000000897) #20	UBL5 (ENSNSUG00000000908) #22	PIN1 (ENSNSUG00000000910) #24	ENSNSUG00000000911	OLFM2 (ENSNSUG00000000914) #25	ENSNSUG00000000918 #26	ENSNSUG00000000923	ENSNSUG00000000927	ENSNSUG00000000930	ENSNSUG00000000935	ENSNSUG00000000940	ENSNSUG00000000943	ENSNSUG00000000944	ENSNSUG00000000950	ENSNSUG00000000960	HDAC7 (ENSNSUG00000000963)	ENSNSUG00000000978
Eastern brown snake	MODERN SPECIES	63	SLC27A1 (ENSPTXG00000010802)	NXNL1 (ENSPTXG00000010801)	ENSPTXG00000010800	GMIP (ENSPTXG00000010799)	LPAR2 (ENSPTXG00000010798)	PBX4 (ENSPTXG00000010797)	ENSPTXG00000010796	ATP13A1 (ENSPTXG00000010795)	CHCHD5 (ENSPTXG00000010794)	ENSPTXG00000010778	ENSPTXG00000010773	ENSPTXG00000010771	ENSPTXG00000010769	ENSPTXG00000010768	FBXL12 (ENSPTXG00000010764) #20	UBL5 (ENSPTXG00000010763) #22	PIN1 (ENSPTXG00000010762) #24	ENSPTXG00000010761	OLFM2 (ENSPTXG00000010760) #25	ENSPTXG00000010755 #26	ENSPTXG00000010751	ENSPTXG00000010748	ENSPTXG00000010746	ENSPTXG00000010745	H2AC7 (ENSPTXG00000010743)	H3C13 (ENSPTXG00000010742)	ENSPTXG00000010740	ENSPTXG00000010739	ENSPTXG00000010738	ENSPTXG00000010737	HDAC7 (ENSPTXG00000010734)
Anura	ANCESTRAL SPECIES																	ENSGT00390000001945 #22
Frog	MODERN SPECIES	3	adgre5 (ENSXETG00000020610)	ddx39a (ENSXETG00000020607)	pkn1 (ENSXETG00000020605)	ptger1 (ENSXETG00000028023)	gipc1 (ENSXETG00000020602)	dnajb1 (ENSXETG00000020601)	tecr (ENSXETG00000020594)	ENSXETG00000020592	colgalt1 (ENSXETG00000020570)	ENSXETG00000043783	znf333 (ENSXETG00000028016)	pgls (ENSXETG00000038389)	nxnl1 (ENSXETG00000044461)	gmip (ENSXETG00000020566)	lpar2 (ENSXETG00000020627)	ubl5 (ENSXETG00000026973) #22	ENSXETG00000045421	ENSXETG00000045363	h4c3 (ENSXETG00000042164)	ENSXETG00000047471	h3c14 (ENSXETG00000041525)	ENSXETG00000040201	ENSXETG00000043306	ENSXETG00000048561	ENSXETG00000042408	ENSXETG00000042790	ENSXETG00000045640	h3c14 (ENSXETG00000042473)	h2bc11 (ENSXETG00000039549)	ENSXETG00000048994	h3c14 (ENSXETG00000046975)
Leishan spiny toad	MODERN SPECIES	6	ENSLLEG00000004887	ENSLLEG00000007914	SLC25A11 (ENSLLEG00000007839)	CHRNE (ENSLLEG00000007701)	ENSLLEG00000007527	MINK1 (ENSLLEG00000007294)	ENSLLEG00000007266	ENSLLEG00000007216	ENSLLEG00000007165	ENSLLEG00000007145	ENSLLEG00000007123	ENSLLEG00000007101	ENSLLEG00000007055	ENSLLEG00000007037	ENSLLEG00000007031	UBL5 (ENSLLEG00000007008) #22	ENSLLEG00000006979	ENSLLEG00000006963	FIS1 (ENSLLEG00000006865)	ENSLLEG00000006853	CLDN15 (ENSLLEG00000006830)	ENSLLEG00000006802	ENSLLEG00000006748	ENSLLEG00000006665	ENSLLEG00000006607	PLD2 (ENSLLEG00000006490)	PSMB6 (ENSLLEG00000006439)	ENSLLEG00000006414	ENSLLEG00000006379	TM4SF5 (ENSLLEG00000006199)	ENSLLEG00000006157
Coelacanth	MODERN SPECIES	329									ENSLACG00000001623	ENSLACG00000002271	shfl (ENSLACG00000003021) #29	RDH8 (ENSLACG00000003872) #27	ENSLACG00000007090	ENSLACG00000011577	OLFM2 (ENSLACG00000013392) #25	UBL5 (ENSLACG00000015288) #22	ENSLACG00000015326	ENSLACG00000015403	ENSLACG00000022314 #20	ENSLACG00000015722	ENSLACG00000015862	ENSLACG00000015947	ATP13A1 (ENSLACG00000015977)	MVB12A (ENSLACG00000016128)	ENSLACG00000016228	pbx4 (ENSLACG00000016442)	GMIP (ENSLACG00000017076)	NXNL1 (ENSLACG00000017286)	EVI5L (ENSLACG00000017352)	ENSLACG00000017590	TDRKH (ENSLACG00000017639)