Eutheria	ANCESTRAL SPECIES		ENSGT00390000007598 #7	ENSGT00510000046975.b.t ##8	ENSGT00940000157769 #10	ENSGT00940000153464.A.b #11	ENSGT00940000154842.a.b #12	ENSGT00390000013340 #13	ENSGT00390000014067 #14	ENSGT00940000159036 #15	ENSGT00940000157380 #16	ENSGT00390000004199 #17	ENSGT00940000163762.a.a	ENSGT00940000154374.b #18	ENSGT00940000157774 #19	ENSGT00940000161269 #20	ENSGT00940000156906 #21	ENSGT00390000008608 #22	ENSGT00940000163309	ENSGT00390000002659 #24	ENSGT01020000230412.A.c.b.d #25	ENSGT00390000018059.b #26	ENSGT00940000160836.d #27	ENSGT00940000162904 #28	ENSGT00440000039028 #29	ENSGT00390000011644 #30	ENSGT00950000183058.A.a #31	ENSGT00390000003645 #32	ENSGT00940000160248 #33	ENSGT00940000159723 #34	ENSGT00940000157831 #35	ENSGT00390000018208 #36	ENSGT00390000005914.a #37
Boreoeutheria	ANCESTRAL SPECIES		ENSGT00900000143287	ENSGT00940000157769 #10	ENSGT00940000153464.A.b #11	ENSGT00940000154842.a.b #12	ENSGT00390000013340 #13	ENSGT00390000014067 #14	ENSGT00940000159036 #15	ENSGT00910000148347	ENSGT00940000157380 #16	ENSGT00390000004199 #17	ENSGT00940000163762.a.a	ENSGT00940000154374.b #18	ENSGT00940000157774 #19	ENSGT00940000161269 #20	ENSGT00940000156906 #21	ENSGT00390000008608 #22	ENSGT00940000162687 #23	ENSGT00940000163309	ENSGT00390000002659 #24	ENSGT01020000230412.A.c.b.d #25	ENSGT00390000018059.b #26	ENSGT00940000162904 #28	ENSGT00940000160836.d #27	ENSGT00440000039028 #29	ENSGT00390000011644 #30	ENSGT00950000185149	ENSGT00950000183058.A.a #31	ENSGT00390000003645 #32	ENSGT00940000160248 #33	ENSGT00940000159723 #34	ENSGT00940000157831 #35
Euarchontoglires	ANCESTRAL SPECIES		ENSGT00940000168189	ENSGT00940000164616 #9	ENSGT00940000157769 #10	ENSGT00940000153464.A.b #11	ENSGT00940000154842.a.b #12	ENSGT00390000013340 #13	ENSGT00390000014067 #14	ENSGT00940000159036 #15	ENSGT00910000148347	ENSGT00940000157380 #16	ENSGT00390000004199 #17	ENSGT00940000154374.b #18	ENSGT00940000157774 #19	ENSGT00940000161269 #20	ENSGT00940000156906 #21	ENSGT00390000008608 #22	ENSGT00940000162687 #23	ENSGT00940000163309	ENSGT00390000002659 #24	ENSGT01020000230412.A.c.b.d #25	ENSGT00390000018059.b #26	ENSGT00940000160836.d #27	ENSGT00940000162904 #28	ENSGT00440000039028 #29	ENSGT00390000011644 #30	ENSGT00950000185149	ENSGT00950000183058.A.a #31	ENSGT00390000003645 #32	ENSGT00940000160248 #33	ENSGT00940000159723 #34	ENSGT00940000157831 #35
Euarchontoglires_A	ANCESTRAL SPECIES		ENSGT00940000163577	ENSGT00900000143287	ENSGT00940000164616 #9	ENSGT00940000157769 #10	ENSGT00940000153464.A.b #11	ENSGT00940000154842.a.b #12	ENSGT00390000013340 #13	ENSGT00390000014067 #14	ENSGT00940000159036 #15	ENSGT00940000157380 #16	ENSGT00390000004199 #17	ENSGT00940000154374.b #18	ENSGT00940000157774 #19	ENSGT00940000161269 #20	ENSGT00940000156906 #21	ENSGT00390000008608 #22	ENSGT00940000162687 #23	ENSGT00390000002659 #24	ENSGT01020000230412.A.c.b.d #25	ENSGT00390000018059.b #26	ENSGT00940000160836.d #27	ENSGT00940000162904 #28	ENSGT00440000039028 #29	ENSGT00390000011644 #30	ENSGT00950000185149	ENSGT00950000183058.A.a #31	ENSGT00390000003645 #32	ENSGT00940000160248 #33	ENSGT00940000159723 #34	ENSGT00940000157831 #35	ENSGT00390000018208 #36
Glires	ANCESTRAL SPECIES		ENSGT00940000163577	ENSGT00900000143287	ENSGT00940000164616 #9	ENSGT00940000157769 #10	ENSGT00940000153464.A.b #11	ENSGT00940000154842.a.b #12	ENSGT00390000013340 #13	ENSGT00390000014067 #14	ENSGT00940000159036 #15	ENSGT00940000157380 #16	ENSGT00390000004199 #17	ENSGT00940000154374.b #18	ENSGT00940000157774 #19	ENSGT00940000161269 #20	ENSGT00940000156906 #21	ENSGT00390000008608 #22	ENSGT00940000162687 #23	ENSGT00390000002659 #24	ENSGT01020000230412.A.c.b.d #25	ENSGT00390000018059.b #26	ENSGT00940000160836.d #27	ENSGT00940000162904 #28	ENSGT00440000039028 #29	ENSGT00390000011644 #30	ENSGT00950000185149	ENSGT00950000183058.A.a #31	ENSGT00390000003645 #32	ENSGT00940000160248 #33	ENSGT00940000159723 #34	ENSGT00940000157831 #35	ENSGT00390000018208 #36
Rodentia	ANCESTRAL SPECIES		ENSGT00940000163577	ENSGT00900000143287	ENSGT00940000164616 #9	ENSGT00940000157769 #10	ENSGT00940000153464.A.b #11	ENSGT00940000154842.a.b #12	ENSGT00390000013340 #13	ENSGT00390000014067 #14	ENSGT00940000159036 #15	ENSGT00940000157380 #16	ENSGT00390000004199 #17	ENSGT00940000154374.b #18	ENSGT00940000157774 #19	ENSGT00940000161269 #20	ENSGT00940000156906 #21	ENSGT00390000008608 #22	ENSGT00940000162687 #23	ENSGT00390000002659 #24	ENSGT01020000230412.A.c.b.d #25	ENSGT00390000018059.b #26	ENSGT00940000160836.d #27	ENSGT00940000162904 #28	ENSGT00440000039028 #29	ENSGT00390000011644 #30	ENSGT00950000185149	ENSGT00950000183058.A.a #31	ENSGT00390000003645 #32	ENSGT00940000160248 #33	ENSGT00940000159723 #34	ENSGT00940000157831 #35	ENSGT00390000018208 #36
Rodentia_B	ANCESTRAL SPECIES		ENSGT00940000164616 #9	ENSGT00940000163577	ENSGT00900000143287	ENSGT00940000157769 #10	ENSGT00940000153464.A.b #11	ENSGT00940000154842.a.b #12	ENSGT00390000013340 #13	ENSGT00390000014067 #14	ENSGT00940000159036 #15	ENSGT00940000157380 #16	ENSGT00390000004199 #17	ENSGT00940000154374.b #18	ENSGT00940000157774 #19	ENSGT00940000161269 #20	ENSGT00940000156906 #21	ENSGT00390000008608 #22	ENSGT00940000162687 #23	ENSGT00390000002659 #24	ENSGT01020000230412.A.c.b.d #25	ENSGT00390000018059.b #26	ENSGT00940000160836.d #27	ENSGT00940000162904 #28	ENSGT00440000039028 #29	ENSGT00390000011644 #30	ENSGT00950000185149	ENSGT00950000183058.A.a #31	ENSGT00390000003645 #32	ENSGT00940000160248 #33	ENSGT00940000159723 #34	ENSGT00940000157831 #35	ENSGT00390000018208 #36
Myomorpha	ANCESTRAL SPECIES	16	ENSGT00940000163577	ENSGT00900000143287	ENSGT00940000164616 #9	ENSGT00940000157769 #10	ENSGT00940000153464.A.b #11	ENSGT00940000154842.a.b #12	ENSGT00390000013340 #13	ENSGT00390000014067 #14	ENSGT00940000159036 #15	ENSGT00940000157380 #16	ENSGT00390000004199 #17	ENSGT00940000154374.b #18	ENSGT00940000157774 #19	ENSGT00940000161269 #20	ENSGT00940000156906 #21	ENSGT00390000008608 #22	ENSGT00940000162687 #23	ENSGT00390000002659 #24	ENSGT01020000230412.A.c.b.d #25	ENSGT00390000018059.b #26	ENSGT00940000160836.d #27	ENSGT00940000162904 #28	ENSGT00440000039028 #29	ENSGT00390000011644 #30	ENSGT00950000185149	ENSGT00950000183058.A.a #31	ENSGT00390000003645 #32	ENSGT00940000160248 #33	ENSGT00940000159723 #34	ENSGT00940000157831 #35	ENSGT00390000018208 #36
Muroidea	ANCESTRAL SPECIES	9	ENSGT00940000163577	ENSGT00900000143287	ENSGT00940000164616 #9	ENSGT00940000157769 #10	ENSGT00940000153464.A.b #11	ENSGT00940000154842.a.b #12	ENSGT00390000013340 #13	ENSGT00390000014067 #14	ENSGT00940000159036 #15	ENSGT00940000157380 #16	ENSGT00390000004199 #17	ENSGT00940000154374.b #18	ENSGT00940000157774 #19	ENSGT00940000161269 #20	ENSGT00940000156906 #21	ENSGT00390000008608 #22	ENSGT00940000162687 #23	ENSGT00390000002659 #24	ENSGT01020000230412.A.c.b.d #25	ENSGT00390000018059.b #26	ENSGT00940000160836.d #27	ENSGT00940000162904.d ##28	ENSGT00940000162904.c #28	ENSGT00440000039028 #29	ENSGT00390000011644 #30	ENSGT00950000185149	ENSGT00950000183058.A.a #31	ENSGT00390000003645 #32	ENSGT00940000160248 #33	ENSGT00940000159723 #34	ENSGT00940000157831 #35
Muroidea_A	ANCESTRAL SPECIES	12	ENSGT00940000163577	ENSGT00900000143287	ENSGT00940000164616 #9	ENSGT00940000157769 #10	ENSGT00940000153464.A.b #11	ENSGT00940000154842.a.b #12	ENSGT00390000013340 #13	ENSGT00390000014067 #14	ENSGT00940000159036 #15	ENSGT00940000157380 #16	ENSGT00390000004199 #17	ENSGT00940000154374.b #18	ENSGT00940000157774 #19	ENSGT00940000161269 #20	ENSGT00940000156906 #21	ENSGT00390000008608 #22	ENSGT00940000162687 #23	ENSGT00390000002659 #24	ENSGT01020000230412.A.c.b.d #25	ENSGT00390000018059.b #26	ENSGT00940000160836.d #27	ENSGT00940000162904.d ##28	ENSGT00940000162904.c #28	ENSGT00440000039028 #29	ENSGT00390000011644 #30	ENSGT00950000185149	ENSGT00950000183058.A.a #31	ENSGT00390000003645 #32	ENSGT00940000160248 #33	ENSGT00940000159723 #34	ENSGT00940000157831 #35
Murinae	ANCESTRAL SPECIES	11	ENSGT00940000164616 #9	ENSGT00940000163577	ENSGT00900000143287	ENSGT00940000157769 #10	ENSGT00940000153464.A.b #11	ENSGT00940000154842.a.b #12	ENSGT00390000013340 #13	ENSGT00390000014067 #14	ENSGT00940000159036 #15	ENSGT00940000157380 #16	ENSGT00390000004199 #17	ENSGT00940000154374.b #18	ENSGT00940000157774 #19	ENSGT00940000161269 #20	ENSGT00940000156906 #21	ENSGT00390000008608 #22	ENSGT00940000162687 #23	ENSGT00390000002659 #24	ENSGT01020000230412.A.c.b.d #25	ENSGT00390000018059.b #26	ENSGT00940000160836.d #27	ENSGT00940000162904.d ##28	ENSGT00940000162904.c #28	ENSGT00440000039028 #29	ENSGT00390000011644 #30	ENSGT00950000185149	ENSGT00950000183058.A.a #31	ENSGT00390000003645 #32	ENSGT00940000160248 #33	ENSGT00940000159723 #34	ENSGT00940000157831 #35
Mus	ANCESTRAL SPECIES	5	ENSGT00940000163577.b	ENSGT00940000163577.a	ENSGT00900000143287	ENSGT00940000157769 #10	ENSGT00940000153464.A.b #11	ENSGT00940000154842.a.b #12	ENSGT00390000013340 #13	ENSGT00390000014067 #14	ENSGT00940000159036 #15	ENSGT00940000157380 #16	ENSGT00390000004199 #17	ENSGT00940000154374.b #18	ENSGT00940000157774 #19	ENSGT00940000161269 #20	ENSGT00940000156906 #21	ENSGT00390000008608 #22	ENSGT00940000162687 #23	ENSGT00390000002659 #24	ENSGT01020000230412.A.c.b.d #25	ENSGT00390000018059.b #26	ENSGT00940000160836.d #27	ENSGT00940000162904.d ##28	ENSGT00940000162904.c #28	ENSGT00440000039028 #29	ENSGT00390000011644 #30	ENSGT00950000185149	ENSGT00950000183058.A.a #31	ENSGT00390000003645 #32	ENSGT00940000160248 #33	ENSGT00940000159723 #34	ENSGT00940000157831 #35
Mus_A	DUPLICATION
Mus_A	ANCESTRAL SPECIES	5	ENSGT00940000163577.a	ENSGT00900000143287	ENSGT00940000164616 #9	ENSGT00940000157769 #10	ENSGT00940000153464.A.b #11	ENSGT00940000154842.a.b #12	ENSGT00390000013340 #13	ENSGT00390000014067 #14	ENSGT00940000159036 #15	ENSGT00940000157380 #16	ENSGT00390000004199 #17	ENSGT00940000154374.b #18	ENSGT00940000157774 #19	ENSGT00940000161269 #20	ENSGT00940000156906 #21	ENSGT00390000008608.i #22	ENSGT00940000162687 #23	ENSGT00390000002659 #24	ENSGT01020000230412.A.c.b.d #25	ENSGT00390000018059.b #26	ENSGT00940000160836.d #27	ENSGT00940000162904.d ##28	ENSGT00940000162904.c #28	ENSGT00440000039028 #29	ENSGT00390000011644 #30	ENSGT00950000185149	ENSGT00950000183058.A.a #31	ENSGT00390000003645 #32	ENSGT00940000160248 #33	ENSGT00940000159723 #34	ENSGT00940000157831 #35
Mus_B	ANCESTRAL SPECIES	7	ENSGT00940000163577.a	ENSGT00900000143287	ENSGT00940000164616 #9	ENSGT00940000157769 #10	ENSGT00940000153464.A.b #11	ENSGT00940000154842.a.b #12	ENSGT00390000013340 #13	ENSGT00390000014067 #14	ENSGT00940000159036 #15	ENSGT00940000157380 #16	ENSGT00390000004199 #17	ENSGT00940000154374.b #18	ENSGT00940000157774 #19	ENSGT00940000161269 #20	ENSGT00940000156906 #21	ENSGT00390000008608.i #22	ENSGT00940000162687 #23	ENSGT00390000002659 #24	ENSGT01020000230412.A.c.b.d #25	ENSGT00390000018059.b #26	ENSGT00940000160836.d #27	ENSGT00940000162904.d ##28	ENSGT00940000162904.c #28	ENSGT00440000039028 #29	ENSGT00390000011644 #30	ENSGT00950000185149	ENSGT00950000183058.A.a #31	ENSGT00390000003645 #32	ENSGT00940000160248 #33	ENSGT00940000159723 #34	ENSGT00940000157831 #35
Mus_C	ANCESTRAL SPECIES	1	ENSGT00940000163577.a	ENSGT00900000143287	ENSGT00940000164616 #9	ENSGT00940000157769 #10	ENSGT00940000153464.A.b #11	ENSGT00940000154842.a.b #12	ENSGT00390000013340 #13	ENSGT00390000014067 #14	ENSGT00940000159036 #15	ENSGT00940000157380 #16	ENSGT00390000004199 #17	ENSGT00940000154374.b #18	ENSGT00940000157774 #19	ENSGT00940000161269 #20	ENSGT00940000156906 #21	ENSGT00390000008608.i #22	ENSGT00940000162687 #23	ENSGT00390000002659 #24	ENSGT01020000230412.A.c.b.d #25	ENSGT00390000018059.b #26	ENSGT00940000160836.d #27	ENSGT00940000162904.c #28	ENSGT00440000039028 #29	ENSGT00390000011644 #30	ENSGT00950000185149	ENSGT00950000183058.A.a #31	ENSGT00390000003645 #32	ENSGT00940000160248 #33	ENSGT00940000159723 #34	ENSGT00940000157831 #35	ENSGT00390000018208 #36
spretus	MODERN SPECIES		Spata46 (MGP_SPRETEiJ_G0015646) #7	Nos1ap (MGP_SPRETEiJ_G0015645) #8	Gm7694 (MGP_SPRETEiJ_G0015644) #9	MGP_SPRETEiJ_G0015643 #10	Uap1 (MGP_SPRETEiJ_G0015642) #11	Ddr2 (MGP_SPRETEiJ_G0015641) #12	Hsd17b7 (MGP_SPRETEiJ_G0015640) #13	Ccdc190 (MGP_SPRETEiJ_G0015639) #14	Rgs4 (MGP_SPRETEiJ_G0015638) #15	Rgs5 (MGP_SPRETEiJ_G0015637) #16	Nuf2 (MGP_SPRETEiJ_G0015636) #17	Pbx1 (MGP_SPRETEiJ_G0015635) #18	Lmx1a (MGP_SPRETEiJ_G0015634) #19	Rxrg (MGP_SPRETEiJ_G0015633) #20	Lrrc52 (MGP_SPRETEiJ_G0015632) #21	Mgst3 (MGP_SPRETEiJ_G0015631) #22	Aldh9a1 (MGP_SPRETEiJ_G0015630) #23	Tmco1 (MGP_SPRETEiJ_G0015629) #24	Uck2 (MGP_SPRETEiJ_G0015628) #25	Fam78b (MGP_SPRETEiJ_G0015627) #26	Fmo9 (MGP_SPRETEiJ_G0015626) #27	Gm4846 (MGP_SPRETEiJ_G0015625) #28	Pogk (MGP_SPRETEiJ_G0015624) #29	Tada1 (MGP_SPRETEiJ_G0015623) #30	Ildr2 (MGP_SPRETEiJ_G0015622) #31	Mael (MGP_SPRETEiJ_G0015621) #32	Gpa33 (MGP_SPRETEiJ_G0015620) #33	Dusp27 (MGP_SPRETEiJ_G0015619) #34	Pou2f1 (MGP_SPRETEiJ_G0015618) #35	Cd247 (MGP_SPRETEiJ_G0015617) #36	Creg1 (MGP_SPRETEiJ_G0015616) #37
Steppe mouse	MODERN SPECIES	2687															Lrrc52 (ENSMSIG00000018585) #21	Mgst3 (ENSMSIG00000018561) #22	Aldh9a1 (ENSMSIG00000018542) #23	Tmco1 (ENSMSIG00000018533) #24	Uck2 (ENSMSIG00000018485) #25	ENSMSIG00000018427	Fam78b (ENSMSIG00000018417) #26	Fmo9 (ENSMSIG00000018384) #27
Mouse	MODERN SPECIES		Gm7694 (ENSMUSG00000102752) #9	Sh2d1b1 (ENSMUSG00000102418)	Sh2d1b2 (ENSMUSG00000073494)	Uhmk1 (ENSMUSG00000026667) #10	Uap1 (ENSMUSG00000026670) #11	Ddr2 (ENSMUSG00000026674) #12	Hsd17b7 (ENSMUSG00000026675) #13	Ccdc190 (ENSMUSG00000070532) #14	Rgs4 (ENSMUSG00000038530) #15	Rgs5 (ENSMUSG00000026678) #16	Nuf2 (ENSMUSG00000026683) #17	Pbx1 (ENSMUSG00000052534) #18	Lmx1a (ENSMUSG00000026686) #19	Rxrg (ENSMUSG00000015843) #20	Lrrc52 (ENSMUSG00000040485) #21	Mgst3 (ENSMUSG00000026688) #22	Aldh9a1 (ENSMUSG00000026687) #23	Tmco1 (ENSMUSG00000052428) #24	Uck2 (ENSMUSG00000026558) #25	Fam78b (ENSMUSG00000060568) #26	Fmo9 (ENSMUSG00000026560) #27	Gm4847 (ENSMUSG00000051081) ##28	Gm4846 (ENSMUSG00000086056) #28	Pogk (ENSMUSG00000040596) #29	Tada1 (ENSMUSG00000026563) #30	Ildr2 (ENSMUSG00000040612) #31	Mael (ENSMUSG00000040629) #32	Gpa33 (ENSMUSG00000000544) #33	Dusp27 (ENSMUSG00000026564) #34	Pou2f1 (ENSMUSG00000026565) #35	Cd247 (ENSMUSG00000005763) #36
Ryukyu mouse	MODERN SPECIES		Gm7694 (MGP_CAROLIEiJ_G0014840) #9	Sh2d1b1 (MGP_CAROLIEiJ_G0014839)	Sh2d1b2 (MGP_CAROLIEiJ_G0014838)	MGP_CAROLIEiJ_G0014837 #10	Uap1 (MGP_CAROLIEiJ_G0014836) #11	Ddr2 (MGP_CAROLIEiJ_G0014835) #12	Hsd17b7 (MGP_CAROLIEiJ_G0014834) #13	Ccdc190 (MGP_CAROLIEiJ_G0014833) #14	Rgs4 (MGP_CAROLIEiJ_G0014832) #15	Rgs5 (MGP_CAROLIEiJ_G0014831) #16	Nuf2 (MGP_CAROLIEiJ_G0014830) #17	Pbx1 (MGP_CAROLIEiJ_G0014829) #18	Lmx1a (MGP_CAROLIEiJ_G0014828) #19	Rxrg (MGP_CAROLIEiJ_G0014827) #20	Lrrc52 (MGP_CAROLIEiJ_G0014826) #21	Mgst3 (MGP_CAROLIEiJ_G0014825) #22	Aldh9a1 (MGP_CAROLIEiJ_G0014824) #23	MGP_CAROLIEiJ_G0014823 #24	Uck2 (MGP_CAROLIEiJ_G0014822) #25	Fam78b (MGP_CAROLIEiJ_G0014821) #26	Fmo9 (MGP_CAROLIEiJ_G0014820) #27	MGP_CAROLIEiJ_G0014819 ##28	Gm4846 (MGP_CAROLIEiJ_G0014818) #28	Pogk (MGP_CAROLIEiJ_G0014817) #29	MGP_CAROLIEiJ_G0014816	Ildr2 (MGP_CAROLIEiJ_G0014815) #31	Mael (MGP_CAROLIEiJ_G0014814) #32	Gpa33 (MGP_CAROLIEiJ_G0014813) #33	Dusp27 (MGP_CAROLIEiJ_G0014812) #34	Pou2f1 (MGP_CAROLIEiJ_G0014811) #35	MGP_CAROLIEiJ_G0014810 #36
Mus_A	ANCESTRAL SPECIES																	ENSGT00390000008608.j ##22
Mus_B	ANCESTRAL SPECIES																	ENSGT00390000008608.j ##22
Mus_C	ANCESTRAL SPECIES																	ENSGT00390000008608.j ##22
Steppe mouse	MODERN SPECIES	3364	Medag (ENSMSIG00000023188)	ENSMSIG00000023226	Alox5ap (ENSMSIG00000023243)	Uspl1 (ENSMSIG00000023285)	ENSMSIG00000023332	Katnal1 (ENSMSIG00000023377)	Ubl3 (ENSMSIG00000023402)	Slc7a1 (ENSMSIG00000023421)	Mtus2 (ENSMSIG00000023484)	Slc46a3 (ENSMSIG00000023578)	Pomp (ENSMSIG00000023598)	ENSMSIG00000023628	Flt1 (ENSMSIG00000023642)	Pan3 (ENSMSIG00000023687)	Flt3 (ENSMSIG00000023851)	ENSMSIG00000023930 ##22	ENSMSIG00000023941	Cdx2 (ENSMSIG00000023947)	Pdx1 (ENSMSIG00000023956)	Gsx1 (ENSMSIG00000023969)	ENSMSIG00000023978	Lnx2 (ENSMSIG00000023999)	Mtif3 (ENSMSIG00000024005)	Gtf3a (ENSMSIG00000024026)	Rasl11a (ENSMSIG00000024039)	ENSMSIG00000024049	Usp12 (ENSMSIG00000024096)	ENSMSIG00000024119	Gpr12 (ENSMSIG00000024129)	Wasf3 (ENSMSIG00000024134)	Cdk8 (ENSMSIG00000024179)
Shrew mouse	MODERN SPECIES	18	Gm7694 (MGP_PahariEiJ_G0028077) #9	MGP_PahariEiJ_G0028076	Sh2d1b2 (MGP_PahariEiJ_G0028075)	Uhmk1 (MGP_PahariEiJ_G0028074) #10	Uap1 (MGP_PahariEiJ_G0028073) #11	Ddr2 (MGP_PahariEiJ_G0028072) #12	Hsd17b7 (MGP_PahariEiJ_G0028071) #13	Ccdc190 (MGP_PahariEiJ_G0028070) #14	Rgs4 (MGP_PahariEiJ_G0028069) #15	Rgs5 (MGP_PahariEiJ_G0028068) #16	Nuf2 (MGP_PahariEiJ_G0028067) #17	Pbx1 (MGP_PahariEiJ_G0028066) #18	Lmx1a (MGP_PahariEiJ_G0028065) #19	Rxrg (MGP_PahariEiJ_G0028064) #20	Lrrc52 (MGP_PahariEiJ_G0028063) #21	Mgst3 (MGP_PahariEiJ_G0028062) #22	Aldh9a1 (MGP_PahariEiJ_G0028061) #23	MGP_PahariEiJ_G0028060 #24	Uck2 (MGP_PahariEiJ_G0028059) #25	Fam78b (MGP_PahariEiJ_G0028058) #26	Fmo9 (MGP_PahariEiJ_G0028057) #27	Gm4847 (MGP_PahariEiJ_G0028056) ##28	Gm4846 (MGP_PahariEiJ_G0028055) #28	MGP_PahariEiJ_G0028054	Tada1 (MGP_PahariEiJ_G0028053) #30	Ildr2 (MGP_PahariEiJ_G0028052) #31	Mael (MGP_PahariEiJ_G0028051) #32	Gpa33 (MGP_PahariEiJ_G0028050) #33	Dusp27 (MGP_PahariEiJ_G0028049) #34	Pou2f1 (MGP_PahariEiJ_G0028048) #35	Cd247 (MGP_PahariEiJ_G0028047) #36
Rat	DUPLICATION
Rat	MODERN SPECIES	4	AABR07021734.1 (ENSRNOG00000059957)	Uhmk1 (ENSRNOG00000002941) #10	Uap1 (ENSRNOG00000002926) #11	Ddr2 (ENSRNOG00000002881) #12	Hsd17b7 (ENSRNOG00000002826) #13	ENSRNOG00000033515	Ccdc190 (ENSRNOG00000025005) #14	Rgs4 (ENSRNOG00000002773) #15	Rgs5 (ENSRNOG00000002730) #16	ENSRNOG00000066769	Nuf2 (ENSRNOG00000002711) #17	Pbx1 (ENSRNOG00000070119) #18	Lmx1a (ENSRNOG00000004642) #19	Rxrg (ENSRNOG00000004537) #20	Lrrc52 (ENSRNOG00000004356) #21	Mgst3 (ENSRNOG00000004245) #22	Aldh9a1 (ENSRNOG00000004027) #23	Tmco1 (ENSRNOG00000003928) #24	Uck2 (ENSRNOG00000003917) #25	Fam78b (ENSRNOG00000068017) #26	Fmo9 (ENSRNOG00000025119) #27	LOC685351 (ENSRNOG00000038499) ##28	Fmo13 (ENSRNOG00000043014) #28	Pogk (ENSRNOG00000032058) #29	Tada1 (ENSRNOG00000003816) #30	ENSRNOG00000068309	Ildr2 (ENSRNOG00000025151) #31	Mael (ENSRNOG00000003790) #32	Gpa33 (ENSRNOG00000003740) #33	Styxl2 (ENSRNOG00000003722) #34	Pou2f1 (ENSRNOG00000003581) #35
Rat	MODERN SPECIES	5	Alb (ENSRNOG00000002911)	Ankrd17 (ENSRNOG00000002940)	Cox18 (ENSRNOG00000003052)	Adamts3 (ENSRNOG00000027463)	Npffr2 (ENSRNOG00000003067)	Gc (ENSRNOG00000003119)	ENSRNOG00000065388	ENSRNOG00000029004	Slc4a4 (ENSRNOG00000003134)	Dck (ENSRNOG00000003296)	Mob1b (ENSRNOG00000010996)	Grsf1 (ENSRNOG00000003392)	Rufy3 (ENSRNOG00000003428)	ENSRNOG00000068298	Utp3 (ENSRNOG00000003599)	RGD1561381 (ENSRNOG00000003606) #22	Jchain (ENSRNOG00000003666)	Enam (ENSRNOG00000003672)	Ambn (ENSRNOG00000003718)	Amtn (ENSRNOG00000003776)	Oprpn (ENSRNOG00000023578)	Smr3b (ENSRNOG00000001942)	Vcsa2 (ENSRNOG00000001945)	LOC108352824 (ENSRNOG00000065981)	Smr3a (ENSRNOG00000001949)	ENSRNOG00000065084	Cabs1 (ENSRNOG00000001950)	AABR07014573.2 (ENSRNOG00000023430)	Csn3 (ENSRNOG00000001951)	Fdcsp (ENSRNOG00000030258)	Odam (ENSRNOG00000023372)
Cricetidae	ANCESTRAL SPECIES	13	ENSGT00510000046975.b.t ##8	ENSGT00940000165337	ENSGT00940000164616 #9	ENSGT00940000157769 #10	ENSGT00940000153464.A.b #11	ENSGT00940000154842.a.b #12	ENSGT00390000013340 #13	ENSGT00390000014067 #14	ENSGT00940000159036 #15	ENSGT00940000157380 #16	ENSGT00390000004199 #17	ENSGT00940000154374.b #18	ENSGT00940000157774 #19	ENSGT00940000161269 #20	ENSGT00940000156906 #21	ENSGT00390000008608 #22	ENSGT00940000162687 #23	ENSGT00390000002659 #24	ENSGT01020000230412.A.c.b.d #25	ENSGT00390000018059.b #26	ENSGT00940000160836.d #27	ENSGT00940000162904.d ##28	ENSGT00940000162904.c #28	ENSGT00440000039028 #29	ENSGT00390000011644 #30	ENSGT00950000183058.A.a #31	ENSGT00390000003645 #32	ENSGT00940000160248 #33	ENSGT00940000159723 #34	ENSGT00940000157831 #35	ENSGT00390000018208 #36
Cricetinae	ANCESTRAL SPECIES	4	ENSGT00390000007598 #7	ENSGT00940000165337	ENSGT00900000143287	ENSGT00940000157769 #10	ENSGT00940000153464.A.b #11	ENSGT00940000154842.a.b #12	ENSGT00390000013340 #13	ENSGT00390000014067 #14	ENSGT00940000159036 #15	ENSGT00940000157380 #16	ENSGT00390000004199 #17	ENSGT00940000154374.b #18	ENSGT00940000157774 #19	ENSGT00940000161269 #20	ENSGT00940000156906 #21	ENSGT00390000008608 #22	ENSGT00940000162687 #23	ENSGT00390000002659 #24	ENSGT01020000230412.A.c.b.d #25	ENSGT00390000018059.b #26	ENSGT00940000160836.d #27	ENSGT00940000162904.d ##28	ENSGT00440000039028 #29	ENSGT00390000011644 #30	ENSGT00950000183058.A.a #31	ENSGT00390000003645 #32	ENSGT00940000160248 #33	ENSGT00940000159723 #34	ENSGT00940000157831 #35	ENSGT00390000018208 #36	ENSGT00390000005914.a #37
Chinese hamster chok1gshd	MODERN SPECIES	2	ENSCGRG00001002529 ##8	Spata46 (ENSCGRG00001001942) #7	ENSCGRG00001004035	Uhmk1 (ENSCGRG00001013226) #10	Uap1 (ENSCGRG00001022983) #11	Ddr2 (ENSCGRG00001010683) #12	Hsd17b7 (ENSCGRG00001012734) #13	Ccdc190 (ENSCGRG00001017352) #14	Rgs4 (ENSCGRG00001021878) #15	Rgs5 (ENSCGRG00001009987) #16	Nuf2 (ENSCGRG00001014967) #17	Pbx1 (ENSCGRG00001022276) #18	Lmx1a (ENSCGRG00001014704) #19	Rxrg (ENSCGRG00001019006) #20	Lrrc52 (ENSCGRG00001014921) #21	Mgst3 (ENSCGRG00001016115) #22	Aldh9a1 (ENSCGRG00001023734) #23	Tmco1 (ENSCGRG00001024372) #24	Uck2 (ENSCGRG00001005584) #25	ENSCGRG00001016705	Fam78b (ENSCGRG00001019514) #26	Fmo9 (ENSCGRG00001017191) #27	Gm4847 (ENSCGRG00001024799) ##28	Pogk (ENSCGRG00001017526) #29	Tada1 (ENSCGRG00001019593) #30	Ildr2 (ENSCGRG00001011480) #31	Mael (ENSCGRG00001009188) #32	Gpa33 (ENSCGRG00001023721) #33	Dusp27 (ENSCGRG00001024829) #34	Pou2f1 (ENSCGRG00001022456) #35	Cd247 (ENSCGRG00001012304) #36
Golden Hamster	MODERN SPECIES	644	ENSMAUG00000012815 ##8	ENSMAUG00000000846	ENSMAUG00000022031	Uhmk1 (ENSMAUG00000001735) #10	Uap1 (ENSMAUG00000001545) #11	Ddr2 (ENSMAUG00000001189) #12	Hsd17b7 (ENSMAUG00000021760) #13	Ccdc190 (ENSMAUG00000021696) #14	Rgs4 (ENSMAUG00000018633) #15	Rgs5 (ENSMAUG00000021837) #16	Nuf2 (ENSMAUG00000020433) #17	Pbx1 (ENSMAUG00000019850) #18	Lmx1a (ENSMAUG00000018894) #19	Rxrg (ENSMAUG00000019514) #20	Lrrc52 (ENSMAUG00000022044) #21	Mgst3 (ENSMAUG00000022162) #22	Aldh9a1 (ENSMAUG00000021995) #23	Tmco1 (ENSMAUG00000014853) #24	ENSMAUG00000011674	Uck2 (ENSMAUG00000005491) #25	Fam78b (ENSMAUG00000013378) #26	Fmo9 (ENSMAUG00000010673) #27	Gm4847 (ENSMAUG00000013180) ##28	Pogk (ENSMAUG00000015441) #29	Tada1 (ENSMAUG00000006788) #30	Ildr2 (ENSMAUG00000018271) #31	Mael (ENSMAUG00000021599) #32	ENSMAUG00000011801	Dusp27 (ENSMAUG00000001597) #34	Pou2f1 (ENSMAUG00000018678) #35	ENSMAUG00000020137 #36
Cricetidae_B	ANCESTRAL SPECIES	8	ENSGT00390000007598 #7	ENSGT00510000046975.b.t ##8	ENSGT00940000164616 #9	ENSGT00940000157769 #10	ENSGT00940000153464.A.b #11	ENSGT00940000154842.a.b #12	ENSGT00390000013340 #13	ENSGT00390000014067 #14	ENSGT00940000159036 #15	ENSGT00940000157380 #16	ENSGT00390000004199 #17	ENSGT00940000154374.b #18	ENSGT00940000157774 #19	ENSGT00940000161269 #20	ENSGT00940000156906 #21	ENSGT00390000008608 #22	ENSGT00940000162687 #23	ENSGT00390000002659 #24	ENSGT01020000230412.A.c.b.d #25	ENSGT00390000018059.b #26	ENSGT00940000160836.d #27	ENSGT00940000162904.d ##28	ENSGT00940000162904.c #28	ENSGT00440000039028 #29	ENSGT00390000011644 #30	ENSGT00950000183058.A.a #31	ENSGT00390000003645 #32	ENSGT00940000160248 #33	ENSGT00940000159723 #34	ENSGT00940000157831 #35	ENSGT00390000018208 #36
Prairie vole	MODERN SPECIES	242															Lrrc52 (ENSMOCG00000012527) #21	Mgst3 (ENSMOCG00000015294) #22	Aldh9a1 (ENSMOCG00000000076) #23
Northern American deer mouse	MODERN SPECIES	2	Gm7694 (ENSPEMG00000026884) #9	Uhmk1 (ENSPEMG00000001487) #10	ENSPEMG00000024044	Uap1 (ENSPEMG00000016224) #11	Ddr2 (ENSPEMG00000012156) #12	Hsd17b7 (ENSPEMG00000022786) #13	Ccdc190 (ENSPEMG00000023644) #14	Rgs4 (ENSPEMG00000031119) #15	Rgs5 (ENSPEMG00000025824) #16	Nuf2 (ENSPEMG00000023899) #17	ENSPEMG00000019682	Pbx1 (ENSPEMG00000009084) #18	Lmx1a (ENSPEMG00000016259) #19	Rxrg (ENSPEMG00000013249) #20	Lrrc52 (ENSPEMG00000025049) #21	Mgst3 (ENSPEMG00000012628) #22	Aldh9a1 (ENSPEMG00000007235) #23	Tmco1 (ENSPEMG00000008521) #24	Uck2 (ENSPEMG00000011469) #25	Fam78b (ENSPEMG00000027973) #26	Fmo9 (ENSPEMG00000012442) #27	Gm4847 (ENSPEMG00000001986) ##28	Gm4846 (ENSPEMG00000014518) #28	Pogk (ENSPEMG00000016935) #29	Tada1 (ENSPEMG00000001422) #30	Ildr2 (ENSPEMG00000010455) #31	Mael (ENSPEMG00000028769) #32	Gpa33 (ENSPEMG00000021697) #33	Dusp27 (ENSPEMG00000023293) #34	Pou2f1 (ENSPEMG00000026471) #35	Cd247 (ENSPEMG00000022519) #36
Upper Galilee mountains blind mole rat	MODERN SPECIES	1427									Rgs4 (ENSNGAG00000023435) #15	Rgs5 (ENSNGAG00000021650) #16	Nuf2 (ENSNGAG00000001940) #17	Pbx1 (ENSNGAG00000017311) #18	Lmx1a (ENSNGAG00000021747) #19	Rxrg (ENSNGAG00000017760) #20	Lrrc52 (ENSNGAG00000023809) #21	Mgst3 (ENSNGAG00000014946) #22	ENSNGAG00000009537 #23	Tmco1 (ENSNGAG00000011588) #24	Uck2 (ENSNGAG00000007874) #25	Fam78b (ENSNGAG00000010631) #26	Fmo9 (ENSNGAG00000022673) #27	Gm4847 (ENSNGAG00000022387) ##28	Gm4846 (ENSNGAG00000020962) #28	Pogk (ENSNGAG00000008037) #29	Tada1 (ENSNGAG00000014924) #30	Ildr2 (ENSNGAG00000020467) #31	Mael (ENSNGAG00000013179) #32	Gpa33 (ENSNGAG00000020099) #33	Dusp27 (ENSNGAG00000021619) #34
Lesser Egyptian jerboa	MODERN SPECIES	46												Pbx1 (ENSJJAG00000011554) #18	Lmx1a (ENSJJAG00000010717) #19	Rxrg (ENSJJAG00000016323) #20	Lrrc52 (ENSJJAG00000015515) #21	Mgst3 (ENSJJAG00000015338) #22	Aldh9a1 (ENSJJAG00000020233) #23	Tmco1 (ENSJJAG00000013455) #24	Uck2 (ENSJJAG00000015704) #25	Fam78b (ENSJJAG00000012530) #26	Fmo9 (ENSJJAG00000014108) #27	ENSJJAG00000017057 #28	ENSJJAG00000012254 #28	ENSJJAG00000001988	Pogk (ENSJJAG00000022257) #29	Tada1 (ENSJJAG00000011010) #30	Ildr2 (ENSJJAG00000007584) #31	Mael (ENSJJAG00000011625) #32	ENSJJAG00000004505	Dusp27 (ENSJJAG00000024394) #34	ENSJJAG00000019954
Kangaroo rat	MODERN SPECIES	376	Edem3 (ENSDORG00000015760)	1700025G04Rik (ENSDORG00000028610)	ENSDORG00000000004	Uhmk1 (ENSDORG00000011233) #10	Uap1 (ENSDORG00000005510) #11	Ddr2 (ENSDORG00000004970) #12	Hsd17b7 (ENSDORG00000004971) #13	Ccdc190 (ENSDORG00000004973) #14	Rgs4 (ENSDORG00000008241) #15	Rgs5 (ENSDORG00000025285) #16	Nuf2 (ENSDORG00000010505) #17	Pbx1 (ENSDORG00000012241) #18	Lmx1a (ENSDORG00000014036) #19	Rxrg (ENSDORG00000014034) #20	Lrrc52 (ENSDORG00000013852) #21	Mgst3 (ENSDORG00000005319) #22	Aldh9a1 (ENSDORG00000012670) #23	Tmco1 (ENSDORG00000024383) #24	Uck2 (ENSDORG00000024295) #25	Fam78b (ENSDORG00000026622) #26	Fmo9 (ENSDORG00000028508) #27	ENSDORG00000027210 #28	ENSDORG00000027955 #28	ENSDORG00000006822 #29	Tada1 (ENSDORG00000006823) #30	Ildr2 (ENSDORG00000001145) #31	Mael (ENSDORG00000001149) #32	Gpa33 (ENSDORG00000029392) #33	Dusp27 (ENSDORG00000005388) #34	Pou2f1 (ENSDORG00000011588) #35	Cd247 (ENSDORG00000026345) #36
Rodentia_A	ANCESTRAL SPECIES		ENSGT00390000007598 #7	ENSGT00510000046975.b.t ##8	ENSGT00940000163577	ENSGT00940000157769 #10	ENSGT00940000153464.A.b #11	ENSGT00940000154842.a.b #12	ENSGT00390000013340 #13	ENSGT00390000014067 #14	ENSGT00940000159036 #15	ENSGT00940000157380 #16	ENSGT00390000004199 #17	ENSGT00940000154374.b #18	ENSGT00940000157774 #19	ENSGT00940000161269 #20	ENSGT00940000156906 #21	ENSGT00390000008608 #22	ENSGT00940000162687 #23	ENSGT00940000163309	ENSGT00390000002659 #24	ENSGT01020000230412.A.c.b.d #25	ENSGT00390000018059.b #26	ENSGT00940000160836.d #27	ENSGT00940000162904 #28	ENSGT00440000039028 #29	ENSGT00390000011644 #30	ENSGT00950000183058.A.a #31	ENSGT00390000003645 #32	ENSGT00940000160248 #33	ENSGT00940000159723 #34	ENSGT00940000157831 #35	ENSGT00390000018208 #36
Hystricomorpha	ANCESTRAL SPECIES	2	ENSGT00390000007598 #7	ENSGT00510000046975.b.t ##8	ENSGT00940000163577	ENSGT00940000157769 #10	ENSGT00940000153464.A.b #11	ENSGT00940000154842.a.b #12	ENSGT00390000013340 #13	ENSGT00390000014067 #14	ENSGT00940000159036 #15	ENSGT00940000157380 #16	ENSGT00390000004199 #17	ENSGT00940000154374.b #18	ENSGT00940000157774 #19	ENSGT00940000161269 #20	ENSGT00940000156906 #21	ENSGT00390000008608 #22	ENSGT00940000163309	ENSGT00390000002659 #24	ENSGT01020000230412.A.c.b.d #25	ENSGT00390000018059.b #26	ENSGT00940000160836.d #27	ENSGT00940000162904.l #28	ENSGT00940000162904.k #28	ENSGT00440000039028 #29	ENSGT00390000011644 #30	ENSGT00950000183058.A.a #31	ENSGT00390000003645 #32	ENSGT00940000160248 #33	ENSGT00940000159723 #34	ENSGT00940000157831 #35	ENSGT00390000018208 #36
Hystricomorpha_a	ANCESTRAL SPECIES	11	ENSGT00390000007598 #7	ENSGT00510000046975.b.t ##8	ENSGT00940000163577	ENSGT00940000157769 #10	ENSGT00940000153464.A.b #11	ENSGT00940000154842.a.b #12	ENSGT00390000013340 #13	ENSGT00390000014067 #14	ENSGT00940000159036 #15	ENSGT00940000157380 #16	ENSGT00390000004199 #17	ENSGT00940000154374.b #18	ENSGT00940000157774 #19	ENSGT00940000161269 #20	ENSGT00940000156906 #21	ENSGT00390000008608 #22	ENSGT00940000163309	ENSGT00390000002659 #24	ENSGT01020000230412.A.c.b.d #25	ENSGT00390000018059.b #26	ENSGT00940000160836.d #27	ENSGT00940000162904.l #28	ENSGT00940000162904.k #28	ENSGT00440000039028 #29	ENSGT00390000011644 #30	ENSGT00950000183058.A.a #31	ENSGT00390000003645 #32	ENSGT00940000160248 #33	ENSGT00940000159723 #34	ENSGT00940000157831 #35	ENSGT00390000018208 #36
Hystricomorpha_b	ANCESTRAL SPECIES	8	ENSGT00390000007598 #7	ENSGT00510000046975.b.t ##8	ENSGT00940000163577	ENSGT00940000157769 #10	ENSGT00940000153464.A.b #11	ENSGT00940000154842.a.b #12	ENSGT00390000013340 #13	ENSGT00390000014067 #14	ENSGT00940000159036 #15	ENSGT00940000157380 #16	ENSGT00390000004199 #17	ENSGT00940000154374.b #18	ENSGT00940000157774 #19	ENSGT00940000161269 #20	ENSGT00940000156906 #21	ENSGT00390000008608 #22	ENSGT00940000162687 #23	ENSGT00940000163309	ENSGT00390000002659 #24	ENSGT01020000230412.A.c.b.d #25	ENSGT00390000018059.b #26	ENSGT00940000160836.d #27	ENSGT00940000162904.l #28	ENSGT00940000162904.k #28	ENSGT00440000039028 #29	ENSGT00390000011644 #30	ENSGT00950000183058.A.a #31	ENSGT00390000003645 #32	ENSGT00940000160248 #33	ENSGT00940000159723 #34	ENSGT00940000157831 #35
Long-tailed chinchilla	MODERN SPECIES	169	SPATA46 (ENSCLAG00000006220) #7	ENSCLAG00000016599 ##8	SH2D1B (ENSCLAG00000005824)	ENSCLAG00000004715 #10	UAP1 (ENSCLAG00000007532) #11	DDR2 (ENSCLAG00000008308) #12	HSD17B7 (ENSCLAG00000005057) #13	CCDC190 (ENSCLAG00000006720) #14	RGS4 (ENSCLAG00000009055) #15	RGS5 (ENSCLAG00000006523) #16	NUF2 (ENSCLAG00000009748) #17	PBX1 (ENSCLAG00000009776) #18	LMX1A (ENSCLAG00000006865) #19	RXRG (ENSCLAG00000007511) #20	LRRC52 (ENSCLAG00000006632) #21	MGST3 (ENSCLAG00000007690) #22	ENSCLAG00000006096 #23	TMCO1 (ENSCLAG00000004923) #24	ENSCLAG00000004400	UCK2 (ENSCLAG00000010692) #25	FAM78B (ENSCLAG00000009778) #26	ENSCLAG00000008264 #28	POGK (ENSCLAG00000004943) #29	TADA1 (ENSCLAG00000009819) #30	ENSCLAG00000008737	ILDR2 (ENSCLAG00000008045) #31	MAEL (ENSCLAG00000006862) #32	ENSCLAG00000017324	STYXL2 (ENSCLAG00000006188) #34	ENSCLAG00000005067	POU2F1 (ENSCLAG00000005927) #35
Degu	MODERN SPECIES	157	UHMK1 (ENSODEG00000006380) #10	ENSODEG00000007230	ENSODEG00000006482 #11	ENSODEG00000006001	DDR2 (ENSODEG00000005987) #12	HSD17B7 (ENSODEG00000007036) #13	CCDC190 (ENSODEG00000007128) #14	ENSODEG00000006225	RGS4 (ENSODEG00000007399) #15	RGS5 (ENSODEG00000006436) #16	NUF2 (ENSODEG00000006206) #17	PBX1 (ENSODEG00000008268) #18	LMX1A (ENSODEG00000006784) #19	RXRG (ENSODEG00000007429) #20	LRRC52 (ENSODEG00000007590) #21	MGST3 (ENSODEG00000008534) #22	ALDH9A1 (ENSODEG00000006714)	TMCO1 (ENSODEG00000006261) #24	ENSODEG00000019301	UCK2 (ENSODEG00000005895) #25	ENSODEG00000019347	ENSODEG00000006713	FAM78B (ENSODEG00000006543) #26	ENSODEG00000019271
Guinea pig	MODERN SPECIES	39		UHMK1 (ENSCPOG00000004561) #10	UAP1 (ENSCPOG00000004568) #11	DDR2 (ENSCPOG00000009721) #12	HSD17B7 (ENSCPOG00000030957) #13	CCDC190 (ENSCPOG00000038251) #14	RGS4 (ENSCPOG00000031194) #15	RGS5 (ENSCPOG00000033467) #16	ENSCPOG00000039704	NUF2 (ENSCPOG00000015019) #17	PBX1 (ENSCPOG00000005958) #18	ENSCPOG00000038291	LMX1A (ENSCPOG00000025320) #19	RXRG (ENSCPOG00000015343) #20	LRRC52 (ENSCPOG00000015344) #21	MGST3 (ENSCPOG00000015346) #22	ALDH9A1 (ENSCPOG00000015347)	TMCO1 (ENSCPOG00000013728) #24	UCK2 (ENSCPOG00000032384) #25	FAM78B (ENSCPOG00000007868) #26	ENSCPOG00000005192 #27	ENSCPOG00000026225 #28	ENSCPOG00000022892 #28	POGK (ENSCPOG00000026820) #29	TADA1 (ENSCPOG00000025598) #30	ILDR2 (ENSCPOG00000024220) #31	MAEL (ENSCPOG00000005046) #32	GPA33 (ENSCPOG00000000085) #33	STYXL2 (ENSCPOG00000002322) #34	POU2F1 (ENSCPOG00000008237) #35	CD247 (ENSCPOG00000022786) #36
Naked mole-rat female	MODERN SPECIES	20	SPATA46 (ENSHGLG00000032913) #7	ENSHGLG00000003369 ##8	ENSHGLG00000004032 #10	ENSHGLG00000013192 #11	DDR2 (ENSHGLG00000007636) #12	HSD17B7 (ENSHGLG00000009322) #13	RGS4 (ENSHGLG00000044423) #15	ENSHGLG00000035946	ENSHGLG00000032628	Rgs5 (ENSHGLG00000042926) #16	NUF2 (ENSHGLG00000003907) #17	PBX1 (ENSHGLG00000004849) #18	LMX1A (ENSHGLG00000003212) #19	LRRC52 (ENSHGLG00000003658) #21	RXRG (ENSHGLG00000003380) #20	MGST3 (ENSHGLG00000003866) #22	ALDH9A1 (ENSHGLG00000004082)	ENSHGLG00000004945 #24	ENSHGLG00000031882	UCK2 (ENSHGLG00000049531) #25	FAM78B (ENSHGLG00000007090) #26	ENSHGLG00000001336	ENSHGLG00000001797 #28	POGK (ENSHGLG00000011531) #29	TADA1 (ENSHGLG00000015074) #30	ILDR2 (ENSHGLG00000019541) #31	MAEL (ENSHGLG00000013438) #32	GPA33 (ENSHGLG00000002446) #33	STYXL2 (ENSHGLG00000050560) #34	ENSHGLG00000002671	POU2F1 (ENSHGLG00000003955) #35
Sciuridae	ANCESTRAL SPECIES		ENSGT00390000007598 #7	ENSGT00510000046975.b.t ##8	ENSGT00940000164616 #9	ENSGT00940000163577	ENSGT00940000157769 #10	ENSGT00940000153464.A.b #11	ENSGT00940000154842.a.b #12	ENSGT00390000013340 #13	ENSGT00940000159036 #15	ENSGT00940000157380 #16	ENSGT00390000004199 #17	ENSGT00940000154374.b #18	ENSGT00940000157774 #19	ENSGT00940000161269 #20	ENSGT00940000156906 #21	ENSGT00390000008608 #22	ENSGT00940000162687 #23	ENSGT00390000002659 #24	ENSGT01020000230412.A.c.b.d #25	ENSGT00390000018059.b #26	ENSGT00940000160836.d #27	ENSGT00940000162904 #28	ENSGT00440000039028 #29	ENSGT00390000011644 #30	ENSGT00950000183058.A.a #31	ENSGT00390000003645 #32	ENSGT00940000160248 #33	ENSGT00940000159723 #34	ENSGT00940000157831 #35	ENSGT00390000018208 #36	ENSGT00390000005914.a #37
Marmotini	ANCESTRAL SPECIES	34	ENSGT00940000157757	ENSGT00510000046975.b.u #8	ENSGT00390000007598 #7	ENSGT00510000046975.b.t ##8	ENSGT00940000157769 #10	ENSGT00940000153464.A.b #11	ENSGT00940000154842.a.b #12	ENSGT00390000013340 #13	ENSGT00940000159036 #15	ENSGT00940000157380 #16	ENSGT00390000004199 #17	ENSGT00940000154374.b #18	ENSGT00940000157774 #19	ENSGT00940000161269 #20	ENSGT00940000156906 #21	ENSGT00390000008608 #22	ENSGT00940000162687 #23	ENSGT00390000002659 #24	ENSGT01020000230412.A.c.b.d #25	ENSGT00390000018059.b #26	ENSGT00940000160836.d #27	ENSGT00940000162904 #28	ENSGT00440000039028 #29	ENSGT00390000011644 #30	ENSGT00950000183058.A.a #31	ENSGT00390000003645 #32	ENSGT00940000160248 #33	ENSGT00940000159723 #34	ENSGT00940000157831 #35	ENSGT00390000018208 #36	ENSGT00390000005914.a #37
Alpin marmot	MODERN SPECIES	29	SPATA46 (ENSMMMG00000021885) #7	ENSMMMG00000021881 #9	SH2D1B (ENSMMMG00000021878)	ENSMMMG00000021868	UHMK1 (ENSMMMG00000021840) #10	UAP1 (ENSMMMG00000021814) #11	DDR2 (ENSMMMG00000021769) #12	HSD17B7 (ENSMMMG00000021761) #13	RGS4 (ENSMMMG00000021742) #15	RGS5 (ENSMMMG00000021737) #16	NUF2 (ENSMMMG00000021710) #17	PBX1 (ENSMMMG00000021655) #18	LMX1A (ENSMMMG00000021633) #19	RXRG (ENSMMMG00000021608) #20	LRRC52 (ENSMMMG00000021599) #21	MGST3 (ENSMMMG00000021590) #22	ENSMMMG00000020694 #23	TMCO1 (ENSMMMG00000020681) #24	ENSMMMG00000020677	UCK2 (ENSMMMG00000020655) #25	FAM78B (ENSMMMG00000020648) #26	ENSMMMG00000020622 #27	ENSMMMG00000020613 #28	POGK (ENSMMMG00000020598) #29	TADA1 (ENSMMMG00000020592) #30	ILDR2 (ENSMMMG00000020581) #31	MAEL (ENSMMMG00000020549) #32	GPA33 (ENSMMMG00000020543) #33	ENSMMMG00000020541 #34	POU2F1 (ENSMMMG00000020142) #35	CD247 (ENSMMMG00000020139) #36
Marmotini_b	ANCESTRAL SPECIES	28									ENSGT00940000159036 #15	ENSGT00940000157380 #16	ENSGT00390000004199 #17	ENSGT00940000154374.b #18	ENSGT00940000157774 #19	ENSGT00940000161269 #20	ENSGT00940000156906 #21	ENSGT00390000008608 #22	ENSGT00940000162687 #23	ENSGT00390000002659 #24	ENSGT01020000230412.A.c.b.d #25	ENSGT00390000018059.b #26	ENSGT00940000160836.d #27	ENSGT00940000162904 #28	ENSGT00440000039028 #29	ENSGT00390000011644 #30	ENSGT00950000183058.A.a #31	ENSGT00390000003645 #32	ENSGT00940000160248 #33	ENSGT00940000159723 #34	ENSGT00940000157831 #35	ENSGT00390000018208 #36	ENSGT00390000005914.a #37
Squirrel	MODERN SPECIES	81										RGS5 (ENSSTOG00000028740) #16	NUF2 (ENSSTOG00000004673) #17	PBX1 (ENSSTOG00000011504) #18	LMX1A (ENSSTOG00000005189) #19	RXRG (ENSSTOG00000010239) #20	LRRC52 (ENSSTOG00000011480) #21	MGST3 (ENSSTOG00000020274) #22	ENSSTOG00000022883 #23	TMCO1 (ENSSTOG00000008110) #24	UCK2 (ENSSTOG00000027307) #25	FAM78B (ENSSTOG00000011769) #26	ENSSTOG00000001862 #27	ENSSTOG00000025310 #28	POGK (ENSSTOG00000025009) #29	TADA1 (ENSSTOG00000006199) #30	ILDR2 (ENSSTOG00000015430) #31	MAEL (ENSSTOG00000015434) #32	GPA33 (ENSSTOG00000010462) #33	STYXL2 (ENSSTOG00000010472) #34	POU2F1 (ENSSTOG00000005980) #35	CD247 (ENSSTOG00000027006) #36	ENSSTOG00000032814 #37
Arctic ground squirrel	MODERN SPECIES	426												PBX1 (ENSUPAG00010023003) #18	LMX1A (ENSUPAG00010023005) #19	RXRG (ENSUPAG00010023008) #20	LRRC52 (ENSUPAG00010023014) #21	ENSUPAG00010023016 #22	ENSUPAG00010023017	ENSUPAG00010023018 #23	TMCO1 (ENSUPAG00010023019) #24	UCK2 (ENSUPAG00010023020) #25	FAM78B (ENSUPAG00010023022) #26	ENSUPAG00010023023 #27
Eurasian red squirrel	MODERN SPECIES	3								ENSSVLG00005009700 #15	ENSSVLG00005009645 #15	RGS5 (ENSSVLG00005009575) #16	NUF2 (ENSSVLG00005009415) #17	PBX1 (ENSSVLG00005009317) #18	LMX1A (ENSSVLG00005009240) #19	RXRG (ENSSVLG00005009146) #20	LRRC52 (ENSSVLG00005009106) #21	MGST3 (ENSSVLG00005009056) #22	ENSSVLG00005008971 #23	TMCO1 (ENSSVLG00005008920) #24	UCK2 (ENSSVLG00005008846) #25	FAM78B (ENSSVLG00005008813) #26	ENSSVLG00005008771 #27	ENSSVLG00005008667 #27	ENSSVLG00005008356 #28	ENSSVLG00005008109 #28	POGK (ENSSVLG00005008055) #29	TADA1 (ENSSVLG00005008032) #30	ILDR2 (ENSSVLG00005007571) #31	MAEL (ENSSVLG00005007267) #32	GPA33 (ENSSVLG00005007183) #33	STYXL2 (ENSSVLG00005007140) #34	ENSSVLG00005006838 #35
Lagomorpha	ANCESTRAL SPECIES	1	ENSGT00940000159221	ENSGT00940000157757	ENSGT00510000046975.b.t ##8	ENSGT00900000143287	ENSGT00940000157769 #10	ENSGT00940000153464.A.b #11	ENSGT00390000013340 #13	ENSGT00390000014067 #14	ENSGT00940000159036 #15	ENSGT00940000157380 #16	ENSGT00390000004199 #17	ENSGT00940000154374.b #18	ENSGT00940000157774 #19	ENSGT00940000161269 #20	ENSGT00940000156906 #21	ENSGT00390000008608 #22	ENSGT00940000162687 #23	ENSGT00390000002659 #24	ENSGT01020000230412.A.c.b.d #25	ENSGT00390000018059.b #26	ENSGT00940000160836.d #27	ENSGT00940000162904 #28	ENSGT00440000039028 #29	ENSGT00390000011644 #30	ENSGT00950000183058.A.a #31	ENSGT00390000003645 #32	ENSGT00940000160248 #33	ENSGT00940000159723 #34	ENSGT00940000157831 #35	ENSGT00390000018208 #36	ENSGT00390000005914.a #37
Pika	MODERN SPECIES	1800																ENSOPRG00000015908 #22	ENSOPRG00000015920
Rabbit	MODERN SPECIES	4	ENSOCUG00000039230	ENSOCUG00000006287	UHMK1 (ENSOCUG00000012411) #10	UAP1 (ENSOCUG00000015579) #11	HMGB1 (ENSOCUG00000022718)	DDR2 (ENSOCUG00000011443) #12	CCDC190 (ENSOCUG00000009524) #14	ENSOCUG00000023193	RGS4 (ENSOCUG00000005204) #15	RGS5 (ENSOCUG00000001169) #16	NUF2 (ENSOCUG00000001171) #17	PBX1 (ENSOCUG00000007609) #18	LMX1A (ENSOCUG00000005509) #19	RXRG (ENSOCUG00000005512) #20	LRRC52 (ENSOCUG00000005518) #21	MGST3 (ENSOCUG00000010376) #22	ENSOCUG00000010380 #23	ENSOCUG00000008441 #24	UCK2 (ENSOCUG00000008446) #25	ENSOCUG00000009904	FAM78B (ENSOCUG00000001178) #26	ENSOCUG00000030560	ENSOCUG00000000379 #27	ENSOCUG00000023460 #28	POGK (ENSOCUG00000028218) #29	TADA1 (ENSOCUG00000010561) #30	ENSOCUG00000005839 #31	MAEL (ENSOCUG00000005848) #32	GPA33 (ENSOCUG00000025603) #33	STYXL2 (ENSOCUG00000006203) #34	ENSOCUG00000035782
Tree shrew	MODERN SPECIES	1063																MGST3 (ENSTBEG00000005299) #22	ZNF45 (ENSTBEG00000005619)
Primates	ANCESTRAL SPECIES	7	ENSGT00940000163577	ENSGT00940000168189	ENSGT00940000157769 #10	ENSGT00940000153464.A.b #11	ENSGT00940000154842.a.b #12	ENSGT00390000013340 #13	ENSGT00390000014067 #14	ENSGT00940000159036 #15	ENSGT00910000148347	ENSGT00940000157380 #16	ENSGT00390000004199 #17	ENSGT00940000154374.b #18	ENSGT00940000157774 #19	ENSGT00940000161269 #20	ENSGT00940000156906 #21	ENSGT00390000008608 #22	ENSGT00940000162687 #23	ENSGT00940000163309	ENSGT00390000002659 #24	ENSGT01020000230412.A.c.b.d #25	ENSGT00390000018059.b #26	ENSGT00940000162904 #28	ENSGT00940000160836.d #27	ENSGT00440000039028 #29	ENSGT00390000011644 #30	ENSGT00950000185149	ENSGT00950000183058.A.a #31	ENSGT00390000003645 #32	ENSGT00940000160248 #33	ENSGT00940000159723 #34	ENSGT00940000157831 #35
Haplorrhini	ANCESTRAL SPECIES	7	ENSGT00940000163577	ENSGT00940000168189	ENSGT00940000157769 #10	ENSGT00940000153464.A.b #11	ENSGT00940000154842.a.b #12	ENSGT00390000013340 #13	ENSGT00390000014067 #14	ENSGT00940000159036 #15	ENSGT00910000148347	ENSGT00940000157380 #16	ENSGT00390000004199 #17	ENSGT00940000154374.b #18	ENSGT00940000157774 #19	ENSGT00940000161269 #20	ENSGT00940000156906 #21	ENSGT00390000008608 #22	ENSGT00940000162687 #23	ENSGT00940000163309	ENSGT00390000002659 #24	ENSGT01020000230412.A.c.b.d #25	ENSGT00390000018059.b #26	ENSGT00440000039028 #29	ENSGT00390000011644 #30	ENSGT00950000185149	ENSGT00950000183058.A.a #31	ENSGT00390000003645 #32	ENSGT00940000160248 #33	ENSGT00940000159723 #34	ENSGT00940000157831 #35	ENSGT00390000018208 #36	ENSGT00390000005914.a #37
Simiiformes	ANCESTRAL SPECIES	8	ENSGT00940000163577	ENSGT00940000168189	ENSGT00940000157769 #10	ENSGT00940000153464.A.b #11	ENSGT00940000154842.a.b #12	ENSGT00390000013340 #13	ENSGT00390000014067 #14	ENSGT00940000159036 #15	ENSGT00910000148347	ENSGT00940000157380 #16	ENSGT00390000004199 #17	ENSGT00940000154374.b #18	ENSGT00940000157774 #19	ENSGT00940000161269 #20	ENSGT00940000156906 #21	ENSGT00390000008608 #22	ENSGT00940000162687 #23	ENSGT00940000163309	ENSGT00390000002659 #24	ENSGT01020000230412.A.c.b.d #25	ENSGT00390000018059.b #26	ENSGT00440000039028 #29	ENSGT00390000011644 #30	ENSGT00950000185149	ENSGT00950000183058.A.a #31	ENSGT00390000003645 #32	ENSGT00940000160248 #33	ENSGT00940000159723 #34	ENSGT00940000157831 #35	ENSGT00390000018208 #36	ENSGT00390000005914.a #37
Catarrhini	ANCESTRAL SPECIES	10	ENSGT00940000168189	ENSGT00940000157769 #10	ENSGT00940000153464.A.b.a #11	ENSGT00940000154842.a.b #12	ENSGT00550000076417	ENSGT00390000013340 #13	ENSGT00390000014067 #14	ENSGT00940000159036 #15	ENSGT00910000148347	ENSGT00940000157380 #16	ENSGT00390000004199 #17	ENSGT00940000154374.b #18	ENSGT00940000157774 #19	ENSGT00940000161269 #20	ENSGT00940000156906 #21	ENSGT00390000008608 #22	ENSGT00940000162687 #23	ENSGT00940000163309	ENSGT00390000002659 #24	ENSGT01020000230412.A.c.b.d #25	ENSGT00390000018059.b #26	ENSGT00440000039028 #29	ENSGT00910000147137	ENSGT00390000011644 #30	ENSGT00950000183058.A.a #31	ENSGT00390000003645 #32	ENSGT00940000160248 #33	ENSGT00940000159723 #34	ENSGT00940000157831 #35	ENSGT00390000018208 #36	ENSGT00390000005914.a #37
Cercopithecidae	ANCESTRAL SPECIES	20								ENSGT00390000014067 #14	ENSGT00940000159036 #15	ENSGT00940000157380 #16	ENSGT00390000004199 #17	ENSGT00940000154374.b #18	ENSGT00940000157774 #19	ENSGT00940000161269 #20	ENSGT00940000156906 #21	ENSGT00390000008608 #22	ENSGT00940000162687 #23	ENSGT00390000002659 #24	ENSGT01020000230412.A.c.b.d #25	ENSGT00390000018059.b #26	ENSGT00440000039028 #29	ENSGT00910000147137	ENSGT00390000011644 #30	ENSGT00950000183058.A.a #31	ENSGT00390000003645 #32	ENSGT00940000160248 #33	ENSGT00940000159723 #34	ENSGT00940000157831 #35	ENSGT00390000018208 #36	ENSGT00390000005914.a #37	ENSGT00910000146947
Cercopithecinae	ANCESTRAL SPECIES	18	ENSGT00390000011529	ENSGT00940000156048.b	ENSGT00390000003512	ENSGT00500000045533	ENSGT00940000157464	ENSGT00390000016262.i	ENSGT00940000156644	ENSGT00390000014067 #14	ENSGT00940000159036 #15	ENSGT00940000157380 #16	ENSGT00390000004199 #17	ENSGT00940000154374.b #18	ENSGT00940000157774 #19	ENSGT00940000161269 #20	ENSGT00940000156906 #21	ENSGT00390000008608 #22	ENSGT00940000162687 #23	ENSGT00390000002659 #24	ENSGT01020000230412.A.c.b.d #25	ENSGT00390000018059.b #26	ENSGT00440000039028 #29	ENSGT00910000147137	ENSGT00390000011644 #30	ENSGT00950000183058.A.a #31	ENSGT00390000003645 #32	ENSGT00940000160248 #33	ENSGT00940000159723 #34	ENSGT00940000157831 #35	ENSGT00390000018208 #36	ENSGT00390000005914.a #37	ENSGT00910000146947
Cercopithecinae_a	ANCESTRAL SPECIES		ENSGT00390000011529	ENSGT00940000156048.b	ENSGT00390000003512	ENSGT00940000157464	ENSGT00390000016262.i	ENSGT00940000156644	ENSGT00390000014067 #14	ENSGT00940000159036 #15	ENSGT00940000157380 #16	ENSGT00390000004199 #17	ENSGT00950000182878.b.a.c.b	ENSGT00940000154374.b #18	ENSGT00940000157774 #19	ENSGT00940000161269 #20	ENSGT00940000156906 #21	ENSGT00390000008608 #22	ENSGT00940000162687 #23	ENSGT00390000002659 #24	ENSGT01020000230412.A.c.b.d #25	ENSGT00390000018059.b #26	ENSGT00440000039028 #29	ENSGT00910000147137	ENSGT00390000011644 #30	ENSGT00950000183058.A.a #31	ENSGT00390000003645 #32	ENSGT00940000160248 #33	ENSGT00940000159723 #34	ENSGT00940000157831 #35	ENSGT00390000018208 #36	ENSGT00390000005914.a #37	ENSGT00910000146947
Macaca	ANCESTRAL SPECIES		ENSGT00390000011529	ENSGT00940000156048.b	ENSGT00390000003512	ENSGT00940000157464	ENSGT00390000016262.i	ENSGT00940000156644	ENSGT00390000014067 #14	ENSGT00940000159036 #15	ENSGT00940000157380 #16	ENSGT00390000004199 #17	ENSGT00950000182878.b.a.c.b	ENSGT00940000154374.b #18	ENSGT00940000157774 #19	ENSGT00940000161269 #20	ENSGT00940000156906 #21	ENSGT00390000008608 #22	ENSGT00940000162687 #23	ENSGT00940000163309	ENSGT00390000002659 #24	ENSGT01020000230412.A.c.b.d #25	ENSGT00390000018059.b #26	ENSGT00440000039028 #29	ENSGT00910000147137	ENSGT00390000011644 #30	ENSGT00950000183058.A.a #31	ENSGT00390000003645 #32	ENSGT00940000160248 #33	ENSGT00940000159723 #34	ENSGT00940000157831 #35	ENSGT00390000018208 #36	ENSGT00390000005914.a #37
Pig-tailed macaque	MODERN SPECIES	197						CCDC190 (ENSMNEG00000036972) #14	RGS4 (ENSMNEG00000032115) #15	RGS5 (ENSMNEG00000014093) #16	NUF2 (ENSMNEG00000035284) #17	PBX1 (ENSMNEG00000036393) #18	ENSMNEG00000043670	LMX1A (ENSMNEG00000029891) #19	RXRG (ENSMNEG00000036664) #20	LRRC52 (ENSMNEG00000036065) #21	ENSMNEG00000034346	MGST3 (ENSMNEG00000041543) #22	ALDH9A1 (ENSMNEG00000000543)	TMCO1 (ENSMNEG00000029465) #24	UCK2 (ENSMNEG00000040312) #25	FAM78B (ENSMNEG00000000001) #26	POGK (ENSMNEG00000025126) #29	ENSMNEG00000034726	TADA1 (ENSMNEG00000011970) #30	ILDR2 (ENSMNEG00000042117) #31	MAEL (ENSMNEG00000042870) #32	GPA33 (ENSMNEG00000040838) #33	STYXL2 (ENSMNEG00000026724) #34	POU2F1 (ENSMNEG00000032112) #35	CD247 (ENSMNEG00000041300) #36	CREG1 (ENSMNEG00000038518) #37	RCSD1 (ENSMNEG00000041991)
Macaca_a	ANCESTRAL SPECIES		ENSGT00390000011529	ENSGT00940000156048.b	ENSGT00390000003512	ENSGT00940000157464	ENSGT00390000016262.i	ENSGT00940000156644	ENSGT00390000014067 #14	ENSGT00940000159036 #15	ENSGT00940000157380 #16	ENSGT00390000004199 #17	ENSGT00950000182878.b.a.c.b	ENSGT00940000154374.b #18	ENSGT00940000157774 #19	ENSGT00940000161269 #20	ENSGT00940000156906 #21	ENSGT00390000008608 #22	ENSGT00940000162687 #23	ENSGT00390000006922.n	ENSGT00390000002659 #24	ENSGT01020000230412.A.c.b.d #25	ENSGT00390000018059.b #26	ENSGT00440000039028 #29	ENSGT00390000011644 #30	ENSGT00950000183058.A.a #31	ENSGT00390000003645 #32	ENSGT00940000160248 #33	ENSGT00940000159723 #34	ENSGT00940000157831 #35	ENSGT00390000018208 #36	ENSGT00390000005914.a #37	ENSGT01100000263539.b.a.a.a.b.b.a.b.a.a.b
Rhesus	MODERN SPECIES		RAB4A (ENSMMUG00000017720)	ENSMMUG00000031107	RHOU (ENSMMUG00000057995)	CCDC190 (ENSMMUG00000002585) #14	RGS4 (ENSMMUG00000005185) #15	RGS5 (ENSMMUG00000005186) #16	ENSMMUG00000058513	NUF2 (ENSMMUG00000001152) #17	ENSMMUG00000061702	ENSMMUG00000056247	ENSMMUG00000031260	PBX1 (ENSMMUG00000019108) #18	LMX1A (ENSMMUG00000006300) #19	RXRG (ENSMMUG00000002892) #20	LRRC52 (ENSMMUG00000015518) #21	MGST3 (ENSMMUG00000015948) #22	ALDH9A1 (ENSMMUG00000015946) #23	ENSMMUG00000062066	TMCO1 (ENSMMUG00000005585) #24	UCK2 (ENSMMUG00000053859) #25	FAM78B (ENSMMUG00000057426) #26	POGK (ENSMMUG00000017789) #29	TADA1 (ENSMMUG00000017790) #30	ILDR2 (ENSMMUG00000023462) #31	MAEL (ENSMMUG00000023463) #32	GPA33 (ENSMMUG00000065239) #33	STYXL2 (ENSMMUG00000051788) #34	POU2F1 (ENSMMUG00000008155) #35	CD247 (ENSMMUG00000008158) #36	CREG1 (ENSMMUG00000063120) #37	ENSMMUG00000062713
Crab-eating macaque	MODERN SPECIES		NUP133 (ENSMFAG00000044341)	ACTA1 (ENSMFAG00000002280)	CCSAP (ENSMFAG00000033596)	ENSMFAG00000053231	RAB4A (ENSMFAG00000038822)	RHOU (ENSMFAG00000061700)	CCDC190 (ENSMFAG00000002602) #14	RGS4 (ENSMFAG00000048267) #15	RGS5 (ENSMFAG00000042336) #16	NUF2 (ENSMFAG00000012290) #17	ENSMFAG00000041080	PBX1 (ENSMFAG00000002296) #18	LMX1A (ENSMFAG00000041101) #19	RXRG (ENSMFAG00000002126) #20	LRRC52 (ENSMFAG00000002493) #21	MGST3 (ENSMFAG00000040545) #22	ENSMFAG00000033280 #23	ENSMFAG00000052593	TMCO1 (ENSMFAG00000002927) #24	ENSMFAG00000063956	UCK2 (ENSMFAG00000032681) #25	FAM78B (ENSMFAG00000032771) #26	POGK (ENSMFAG00000037391) #29	TADA1 (ENSMFAG00000032577) #30	ILDR2 (ENSMFAG00000002585) #31	MAEL (ENSMFAG00000040593) #32	GPA33 (ENSMFAG00000001951) #33	STYXL2 (ENSMFAG00000005792) #34	POU2F1 (ENSMFAG00000002865) #35	CD247 (ENSMFAG00000000076) #36	CREG1 (ENSMFAG00000045348) #37
Cercopithecinae_b	ANCESTRAL SPECIES	3	ENSGT00390000011529	ENSGT00940000156048.b	ENSGT00390000003512	ENSGT00940000157464	ENSGT00390000016262.i	ENSGT00940000156644	ENSGT00390000014067 #14	ENSGT00940000159036 #15	ENSGT00940000157380 #16	ENSGT00390000004199 #17	ENSGT00950000182878.b.a.c.b	ENSGT00940000154374.b #18	ENSGT00940000157774 #19	ENSGT00940000161269 #20	ENSGT00940000156906 #21	ENSGT00390000008608 #22	ENSGT00940000162687 #23	ENSGT00390000002659 #24	ENSGT01020000230412.A.c.b.d #25	ENSGT00390000018059.b #26	ENSGT00440000039028 #29	ENSGT00910000147137	ENSGT00390000011644 #30	ENSGT00950000183058.A.a #31	ENSGT00390000003645 #32	ENSGT00940000160248 #33	ENSGT00940000159723 #34	ENSGT00940000157831 #35	ENSGT00390000018208 #36	ENSGT00390000005914.a #37	ENSGT00910000146947
Olive baboon	DUPLICATION
Olive baboon	MODERN SPECIES		ENSPANG00000046770	CCSAP (ENSPANG00000010018)	RAB4A (ENSPANG00000021029)	ENSPANG00000035259	RHOU (ENSPANG00000042094)	CCDC190 (ENSPANG00000005960) #14	ENSPANG00000033732	RGS4 (ENSPANG00000015543) #15	RGS5 (ENSPANG00000006547) #16	NUF2 (ENSPANG00000015339) #17	ENSPANG00000042217	PBX1 (ENSPANG00000012912) #18	LMX1A (ENSPANG00000008915) #19	RXRG (ENSPANG00000008314) #20	LRRC52 (ENSPANG00000009794) #21	ENSPANG00000021905 #22	ENSPANG00000047258 #23	TMCO1 (ENSPANG00000032900) #24	UCK2 (ENSPANG00000016507) #25	FAM78B (ENSPANG00000012825) #26	POGK (ENSPANG00000013790) #29	TADA1 (ENSPANG00000010530) #30	ILDR2 (ENSPANG00000002248) #31	MAEL (ENSPANG00000000174) #32	GPA33 (ENSPANG00000041543) #33	STYXL2 (ENSPANG00000000175) #34	ENSPANG00000040953	POU2F1 (ENSPANG00000006362) #35	CD247 (ENSPANG00000015050) #36	CREG1 (ENSPANG00000049146) #37	ENSPANG00000044055
Olive baboon	MODERN SPECIES	263																ENSPANG00000044215 #22	ENSPANG00000010286 #23
Cercopithecinae_d	ANCESTRAL SPECIES	112							ENSGT00390000014067 #14	ENSGT00940000159036 #15	ENSGT00940000157380 #16	ENSGT00390000004199 #17	ENSGT00950000182878.b.a.c.b	ENSGT00940000154374.b #18	ENSGT00940000157774 #19	ENSGT00940000161269 #20	ENSGT00940000156906 #21	ENSGT00390000008608 #22	ENSGT00940000162687 #23	ENSGT00390000002659 #24	ENSGT01020000230412.A.c.b.d #25	ENSGT00390000018059.b #26	ENSGT00440000039028 #29	ENSGT00910000147137	ENSGT00390000011644 #30	ENSGT00950000183058.A.a #31	ENSGT00390000003645 #32	ENSGT00940000160248 #33	ENSGT00940000159723 #34	ENSGT00940000157831 #35	ENSGT00390000018208 #36	ENSGT00390000005914.a #37	ENSGT00910000146947
Sooty mangabey	MODERN SPECIES	280							CCDC190 (ENSCATG00000025970) #14	RGS4 (ENSCATG00000029441) #15	RGS5 (ENSCATG00000038690) #16	NUF2 (ENSCATG00000008455) #17	ENSCATG00000041873	PBX1 (ENSCATG00000031224) #18	LMX1A (ENSCATG00000000700) #19	RXRG (ENSCATG00000000813) #20	LRRC52 (ENSCATG00000029560) #21	MGST3 (ENSCATG00000025249) #22	ENSCATG00000039435 #23	TMCO1 (ENSCATG00000032184) #24	UCK2 (ENSCATG00000024308) #25	FAM78B (ENSCATG00000035690) #26	ENSCATG00000043467	POGK (ENSCATG00000038811) #29	ENSCATG00000036573	TADA1 (ENSCATG00000033257) #30	ILDR2 (ENSCATG00000031387) #31
Drill	DUPLICATION
Drill	MODERN SPECIES	1257											ENSMLEG00000028628	PBX1 (ENSMLEG00000031830) #18	LMX1A (ENSMLEG00000037351) #19	RXRG (ENSMLEG00000026519) #20	LRRC52 (ENSMLEG00000028965) #21	ENSMLEG00000043915 #22
Drill	MODERN SPECIES	774																ENSMLEG00000038946 #22	ENSMLEG00000030023 #23	TMCO1 (ENSMLEG00000043477) #24	UCK2 (ENSMLEG00000038306) #25	FAM78B (ENSMLEG00000019266) #26	POGK (ENSMLEG00000030864) #29	ENSMLEG00000037734	TADA1 (ENSMLEG00000027247) #30	ILDR2 (ENSMLEG00000041834) #31	MAEL (ENSMLEG00000034260) #32	GPA33 (ENSMLEG00000039317) #33	STYXL2 (ENSMLEG00000030756) #34	POU2F1 (ENSMLEG00000036268) #35	CD247 (ENSMLEG00000044030) #36	RCSD1 (ENSMLEG00000030412)	ENSMLEG00000034741
Vervet Monkey	MODERN SPECIES	17	ABCB10 (ENSCSAG00000010616)	ACTA1 (ENSCSAG00000010625)	CCSAP (ENSCSAG00000010628)	ENSCSAG00000019365	RAB4A (ENSCSAG00000010634)	ENSCSAG00000000232	RHOU (ENSCSAG00000010641)	CCDC190 (ENSCSAG00000010652) #14	RGS4 (ENSCSAG00000010658) #15	RGS5 (ENSCSAG00000010661) #16	NUF2 (ENSCSAG00000010672) #17	PBX1 (ENSCSAG00000010678) #18	LMX1A (ENSCSAG00000010720) #19	RXRG (ENSCSAG00000010739) #20	LRRC52 (ENSCSAG00000010746) #21	MGST3 (ENSCSAG00000010754) #22	ENSCSAG00000010759 #23	ENSCSAG00000000233	TMCO1 (ENSCSAG00000010765) #24	UCK2 (ENSCSAG00000010772) #25	ENSCSAG00000000234	FAM78B (ENSCSAG00000010776) #26	POGK (ENSCSAG00000010784) #29	TADA1 (ENSCSAG00000010789) #30	ILDR2 (ENSCSAG00000010833) #31	MAEL (ENSCSAG00000010893) #32	GPA33 (ENSCSAG00000010901) #33	STYXL2 (ENSCSAG00000010906) #34	ENSCSAG00000010909 #35	POU2F1 (ENSCSAG00000010919) #35	CD247 (ENSCSAG00000010930) #36
Rhinopithecus	ANCESTRAL SPECIES	129								ENSGT00390000014067 #14	ENSGT00940000159036 #15	ENSGT00940000157380 #16	ENSGT00390000004199 #17	ENSGT00940000154374.b #18	ENSGT00940000157774 #19	ENSGT00940000161269 #20	ENSGT00940000156906 #21	ENSGT00390000008608 #22	ENSGT00940000162687 #23	ENSGT00390000002659 #24	ENSGT01020000230412.A.c.b.d #25	ENSGT00390000004690.a.a.v.ib.a	ENSGT00390000018059.b #26	ENSGT00440000039028 #29	ENSGT00390000011644 #30	ENSGT00950000183058.A.a #31	ENSGT00390000003645 #32	ENSGT00940000160248 #33	ENSGT00940000159723 #34	ENSGT00940000157831 #35	ENSGT00390000018208 #36	ENSGT00390000005914.a #37	ENSGT00910000146947
Golden snub-nosed monkey	MODERN SPECIES	1735							CCDC190 (ENSRROG00000041631) #14	RGS4 (ENSRROG00000024429) #15	ENSRROG00000011948 #16	NUF2 (ENSRROG00000030014) #17	ENSRROG00000028679	PBX1 (ENSRROG00000033150) #18	LMX1A (ENSRROG00000025899) #19	RXRG (ENSRROG00000021923) #20	LRRC52 (ENSRROG00000041523) #21	MGST3 (ENSRROG00000039212) #22	ENSRROG00000038137 #23	TMCO1 (ENSRROG00000033909) #24	UCK2 (ENSRROG00000041317) #25	ENSRROG00000039273	FAM78B (ENSRROG00000030244) #26	POGK (ENSRROG00000034972) #29	TADA1 (ENSRROG00000003293) #30	ILDR2 (ENSRROG00000041126) #31
Black snub-nosed monkey	MODERN SPECIES	817												PBX1 (ENSRBIG00000041439) #18	LMX1A (ENSRBIG00000032913) #19	RXRG (ENSRBIG00000039325) #20	LRRC52 (ENSRBIG00000040660) #21	MGST3 (ENSRBIG00000043830) #22	ENSRBIG00000032132 #23
Hominoidea	ANCESTRAL SPECIES	7	ENSGT00940000157769 #10	ENSGT00940000153464.A.b.a #11	ENSGT00940000154842.a.b #12	ENSGT00550000076417	ENSGT00390000013340 #13	ENSGT00390000014067 #14	ENSGT00940000159036 #15	ENSGT00910000148347	ENSGT00940000157380 #16	ENSGT00390000004199 #17	ENSGT00940000154374.b #18	ENSGT00940000157774 #19	ENSGT00940000161269 #20	ENSGT00940000156906 #21	ENSGT00940000154326.a.b.b.m.b.a	ENSGT00390000008608 #22	ENSGT00940000163309	ENSGT00390000002659 #24	ENSGT01020000230412.A.c.b.d #25	ENSGT00390000018059.b #26	ENSGT00440000039028 #29	ENSGT00910000147137	ENSGT00390000011644 #30	ENSGT00950000183058.A.a #31	ENSGT00390000003645 #32	ENSGT00940000160248 #33	ENSGT00940000159723 #34	ENSGT00940000157831 #35	ENSGT00390000018208 #36	ENSGT00390000005914.a #37	ENSGT00910000146947
Hominidae	ANCESTRAL SPECIES	6	ENSGT00940000168189	ENSGT00940000157769 #10	ENSGT00940000153464.A.b.a #11	ENSGT00940000154842.a.b #12	ENSGT00550000076417	ENSGT00390000013340 #13	ENSGT00390000014067 #14	ENSGT00940000159036 #15	ENSGT00940000157380 #16	ENSGT00390000004199 #17	ENSGT00940000154374.b #18	ENSGT00940000157774 #19	ENSGT00940000161269 #20	ENSGT00940000156906 #21	ENSGT00940000154326.a.b.b.m.b.a	ENSGT00390000008608 #22	ENSGT00940000163309	ENSGT00390000002659 #24	ENSGT01020000230412.A.c.b.d #25	ENSGT00390000018059.b #26	ENSGT00440000039028 #29	ENSGT00910000147137	ENSGT00390000011644 #30	ENSGT00950000183058.A.a #31	ENSGT00390000003645 #32	ENSGT00940000160248 #33	ENSGT00940000159723 #34	ENSGT00940000157831 #35	ENSGT00390000018208 #36	ENSGT00390000005914.a #37	ENSGT00910000146947
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	6	ENSGT00940000168189	ENSGT00940000157769 #10	ENSGT00940000153464.A.b.a #11	ENSGT00940000154842.a.b #12	ENSGT00550000076417	ENSGT00390000013340.e #13	ENSGT00390000014067 #14	ENSGT00940000159036 #15	ENSGT00940000157380 #16	ENSGT00390000004199 #17	ENSGT00940000154374.b #18	ENSGT00940000157774 #19	ENSGT00940000161269 #20	ENSGT00940000156906 #21	ENSGT00940000154326.a.b.b.m.b.a	ENSGT00390000008608 #22	ENSGT00940000163309	ENSGT00390000002659 #24	ENSGT01020000230412.A.c.b.d #25	ENSGT00390000018059.b #26	ENSGT00940000154191.j	ENSGT00940000160836.d #27	ENSGT00440000039028 #29	ENSGT00910000147137	ENSGT00390000011644 #30	ENSGT00950000183058.A.a #31	ENSGT00390000003645 #32	ENSGT00940000160248 #33	ENSGT00940000159723 #34	ENSGT00940000157831 #35	ENSGT00390000018208 #36
Gorilla	MODERN SPECIES		SH2D1B (ENSGGOG00000014121)	ENSGGOG00000037180	UHMK1 (ENSGGOG00000002032) #10	UAP1 (ENSGGOG00000016431) #11	DDR2 (ENSGGOG00000011593) #12	HSD17B7 (ENSGGOG00000011264) #13	CCDC190 (ENSGGOG00000001952) #14	ENSGGOG00000011376 #15	RGS5 (ENSGGOG00000013984) #16	NUF2 (ENSGGOG00000007980) #17	PBX1 (ENSGGOG00000011303) #18	ENSGGOG00000042136	LMX1A (ENSGGOG00000003286) #19	RXRG (ENSGGOG00000003983) #20	LRRC52 (ENSGGOG00000007321) #21	MGST3 (ENSGGOG00000013271) #22	ENSGGOG00000000900 #23	ENSGGOG00000041829 #24	UCK2 (ENSGGOG00000038402) #25	FAM78B (ENSGGOG00000034965) #26	ENSGGOG00000038123	ENSGGOG00000026140 #27	ENSGGOG00000026797	POGK (ENSGGOG00000008163) #29	ENSGGOG00000039149	TADA1 (ENSGGOG00000008168) #30	ILDR2 (ENSGGOG00000008177) #31	MAEL (ENSGGOG00000012560) #32	GPA33 (ENSGGOG00000004520) #33	STYXL2 (ENSGGOG00000004523) #34	POU2F1 (ENSGGOG00000016243) #35
Homo/Pan group	ANCESTRAL SPECIES	7	ENSGT00940000168189	ENSGT00940000157769 #10	ENSGT00940000153464.A.b.a #11	ENSGT00940000154842.a.b #12	ENSGT00550000076417	ENSGT00390000013340.e #13	ENSGT00390000014067 #14	ENSGT00940000159036 #15	ENSGT00940000157380 #16	ENSGT00390000004199 #17	ENSGT00940000154374.b #18	ENSGT00940000157774 #19	ENSGT00940000161269 #20	ENSGT00940000156906 #21	ENSGT00940000154326.a.b.b.m.b.a	ENSGT00390000008608 #22	ENSGT00940000163309	ENSGT00390000002659 #24	ENSGT01020000230412.A.c.b.d #25	ENSGT00390000018059.b #26	ENSGT00940000154191.j	ENSGT00940000160836.d #27	ENSGT00440000039028 #29	ENSGT00910000147137	ENSGT00390000011644 #30	ENSGT00950000183058.A.a #31	ENSGT00390000003645 #32	ENSGT00940000160248 #33	ENSGT00940000159723 #34	ENSGT00940000157831 #35	ENSGT00390000018208 #36
Human	MODERN SPECIES		SPATA46 (ENSG00000171722) #7	C1orf226 (ENSG00000239887) ##8	SH2D1B (ENSG00000198574)	UHMK1 (ENSG00000152332) #10	UAP1 (ENSG00000117143) #11	DDR2 (ENSG00000162733) #12	HSD17B7 (ENSG00000132196) #13	CCDC190 (ENSG00000185860) #14	RGS4 (ENSG00000117152) #15	RGS5 (ENSG00000143248) #16	NUF2 (ENSG00000143228) #17	PBX1 (ENSG00000185630) #18	LMX1A (ENSG00000162761) #19	RXRG (ENSG00000143171) #20	LRRC52 (ENSG00000162763) #21	MGST3 (ENSG00000143198) #22	ALDH9A1 (ENSG00000143149)	TMCO1 (ENSG00000143183) #24	UCK2 (ENSG00000143179) #25	FAM78B (ENSG00000188859) #26	POGK (ENSG00000143157) #29	TADA1 (ENSG00000152382) #30	ILDR2 (ENSG00000143195) #31	MAEL (ENSG00000143194) #32	GPA33 (ENSG00000143167) #33	STYXL2 (ENSG00000198842) #34	POU2F1 (ENSG00000143190) #35	CD247 (ENSG00000198821) #36	CREG1 (ENSG00000143162) #37	RCSD1 (ENSG00000198771)	MPZL1 (ENSG00000197965)
Pan	ANCESTRAL SPECIES		ENSGT00940000168189	ENSGT00940000157769 #10	ENSGT00940000153464.A.b.a #11	ENSGT00940000154842.a.b #12	ENSGT00550000076417	ENSGT00390000013340.e #13	ENSGT00390000014067 #14	ENSGT00940000159036 #15	ENSGT00940000157380 #16	ENSGT00390000004199 #17	ENSGT00940000154374.b #18	ENSGT00940000157774 #19	ENSGT00940000161269 #20	ENSGT00940000156906 #21	ENSGT00940000154326.a.b.b.m.b.a	ENSGT00390000008608 #22	ENSGT00940000163309	ENSGT00390000002659 #24	ENSGT01020000230412.A.c.b.d #25	ENSGT00390000018059.b #26	ENSGT00940000154191.j	ENSGT00940000160836.d #27	ENSGT00440000039028 #29	ENSGT00910000147137	ENSGT00390000011644 #30	ENSGT00950000183058.A.a #31	ENSGT00390000003645 #32	ENSGT00940000160248 #33	ENSGT00940000159723 #34	ENSGT00940000157831 #35	ENSGT00390000018208 #36
Chimpanzee	MODERN SPECIES		SH2D1B (ENSPTRG00000024320)	ENSPTRG00000048731	UHMK1 (ENSPTRG00000001601) #10	UAP1 (ENSPTRG00000001602) #11	DDR2 (ENSPTRG00000001603) #12	ENSPTRG00000051980	HSD17B7 (ENSPTRG00000002435) #13	CCDC190 (ENSPTRG00000047448) #14	RGS4 (ENSPTRG00000001608) #15	RGS5 (ENSPTRG00000001609) #16	NUF2 (ENSPTRG00000001610) #17	PBX1 (ENSPTRG00000001611) #18	LMX1A (ENSPTRG00000001612) #19	RXRG (ENSPTRG00000023788) #20	LRRC52 (ENSPTRG00000001614) #21	MGST3 (ENSPTRG00000001616) #22	ALDH9A1 (ENSPTRG00000001617)	TMCO1 (ENSPTRG00000001618) #24	UCK2 (ENSPTRG00000001619) #25	FAM78B (ENSPTRG00000001621) #26	ENSPTRG00000048937	ENSPTRG00000045175 #27	POGK (ENSPTRG00000001626) #29	TADA1 (ENSPTRG00000045809) #30	ILDR2 (ENSPTRG00000001628) #31	MAEL (ENSPTRG00000001629) #32	GPA33 (ENSPTRG00000001630) #33	STYXL2 (ENSPTRG00000022532) #34	POU2F1 (ENSPTRG00000048706) #35	CD247 (ENSPTRG00000023523) #36	CREG1 (ENSPTRG00000001635) #37
Bonobo	MODERN SPECIES		ENSPPAG00000034441	UHMK1 (ENSPPAG00000041163) #10	UAP1 (ENSPPAG00000032875) #11	DDR2 (ENSPPAG00000030809) #12	ENSPPAG00000016253	HSD17B7 (ENSPPAG00000028691) #13	CCDC190 (ENSPPAG00000041751) #14	ENSPPAG00000032457 #15	RGS5 (ENSPPAG00000031360) #16	NUF2 (ENSPPAG00000042496) #17	PBX1 (ENSPPAG00000012661) #18	LMX1A (ENSPPAG00000032600) #19	RXRG (ENSPPAG00000032033) #20	LRRC52 (ENSPPAG00000042343) #21	ENSPPAG00000029238	MGST3 (ENSPPAG00000036962) #22	ALDH9A1 (ENSPPAG00000041488)	ENSPPAG00000033973 #24	UCK2 (ENSPPAG00000028634) #25	FAM78B (ENSPPAG00000027797) #26	ENSPPAG00000035278	ENSPPAG00000029061 #27	POGK (ENSPPAG00000037835) #29	ENSPPAG00000042755	TADA1 (ENSPPAG00000041262) #30	ILDR2 (ENSPPAG00000037100) #31	MAEL (ENSPPAG00000042153) #32	GPA33 (ENSPPAG00000039182) #33	STYXL2 (ENSPPAG00000029959) #34	POU2F1 (ENSPPAG00000036465) #35	CD247 (ENSPPAG00000043003) #36
Orangutan	MODERN SPECIES		SH2D1B (ENSPPYG00000000584)	ENSPPYG00000000583	UHMK1 (ENSPPYG00000000582) #10	UAP1 (ENSPPYG00000000581) #11	DDR2 (ENSPPYG00000000580) #12	ENSPPYG00000000579	HSD17B7 (ENSPPYG00000000578) #13	CCDC190 (ENSPPYG00000037665) #14	RGS4 (ENSPPYG00000000576) #15	RGS5 (ENSPPYG00000030379) #16	NUF2 (ENSPPYG00000000574) #17	PBX1 (ENSPPYG00000000572) #18	LMX1A (ENSPPYG00000036392) #19	RXRG (ENSPPYG00000000571) #20	LRRC52 (ENSPPYG00000000570) #21	MGST3 (ENSPPYG00000000569) #22	ALDH9A1 (ENSPPYG00000000568)	TMCO1 (ENSPPYG00000035165) #24	UCK2 (ENSPPYG00000000563) #25	FAM78B (ENSPPYG00000000561) #26	POGK (ENSPPYG00000037463) #29	TADA1 (ENSPPYG00000000557) #30	ILDR2 (ENSPPYG00000000556) #31	MAEL (ENSPPYG00000000555) #32	GPA33 (ENSPPYG00000000554) #33	STYXL2 (ENSPPYG00000000553) #34	POU2F1 (ENSPPYG00000000552) #35	CD247 (ENSPPYG00000000551) #36	CREG1 (ENSPPYG00000000550) #37	RCSD1 (ENSPPYG00000000549)	MPZL1 (ENSPPYG00000000548)
Gibbon	MODERN SPECIES	2	UAP1 (ENSNLEG00000026707) #11	DDR2 (ENSNLEG00000014557) #12	ENSNLEG00000019162	HSD17B7 (ENSNLEG00000014591) #13	CCDC190 (ENSNLEG00000014616) #14	ENSNLEG00000014620 #15	ENSNLEG00000032703	RGS5 (ENSNLEG00000029484) #16	NUF2 (ENSNLEG00000014636) #17	ENSNLEG00000028806	PBX1 (ENSNLEG00000014662) #18	ENSNLEG00000014674 #19	RXRG (ENSNLEG00000014680) #20	LRRC52 (ENSNLEG00000014689) #21	ENSNLEG00000034998	MGST3 (ENSNLEG00000014693) #22	ENSNLEG00000032166	ALDH9A1 (ENSNLEG00000014707)	ENSNLEG00000033114	ENSNLEG00000014731 #24	UCK2 (ENSNLEG00000014745) #25	FAM78B (ENSNLEG00000014753) #26	ENSNLEG00000032956	POGK (ENSNLEG00000014756) #29	TADA1 (ENSNLEG00000014761) #30	ENSNLEG00000014769 #31	MAEL (ENSNLEG00000014771) #32	ENSNLEG00000028779 #33	STYXL2 (ENSNLEG00000014783) #34	POU2F1 (ENSNLEG00000014790) #35	CD247 (ENSNLEG00000014798) #36
Platyrrhini	ANCESTRAL SPECIES	12	ENSGT00940000163577	ENSGT00940000157769 #10	ENSGT00940000153464.A.b #11	ENSGT00940000154842.a.b #12	ENSGT00390000013340 #13	ENSGT00390000014067 #14	ENSGT00940000159036 #15	ENSGT00940000157380 #16	ENSGT00390000004199 #17	ENSGT00950000183210.d.a.c.b.b.a.b.b.a.b	ENSGT00940000154205.h.bb	ENSGT00940000154374.b #18	ENSGT00940000157774 #19	ENSGT00940000161269 #20	ENSGT00940000156906 #21	ENSGT00390000008608 #22	ENSGT00940000162687 #23	ENSGT00940000163309	ENSGT00390000002659 #24	ENSGT01020000230412.A.c.b.d #25	ENSGT00390000018059.b #26	ENSGT00440000039028 #29	ENSGT00390000011644 #30	ENSGT00950000185149	ENSGT00950000183058.A.a #31	ENSGT00390000003645 #32	ENSGT00940000160248 #33	ENSGT00940000159723 #34	ENSGT00940000157831 #35	ENSGT00390000018208 #36	ENSGT00390000005914.a #37
Cebidae	ANCESTRAL SPECIES	12	ENSGT00940000163577	ENSGT00940000157769 #10	ENSGT00940000153464.A.b #11	ENSGT00940000154842.a.b #12	ENSGT00390000013340 #13	ENSGT00390000014067 #14	ENSGT00940000159036 #15	ENSGT00940000157380 #16	ENSGT00390000004199 #17	ENSGT00950000183210.d.a.c.b.b.a.b.b.a.b	ENSGT00940000154205.h.bb	ENSGT00940000154374.b #18	ENSGT00940000157774 #19	ENSGT00940000161269 #20	ENSGT00940000156906 #21	ENSGT00390000008608 #22	ENSGT00940000162687 #23	ENSGT00940000163309	ENSGT00390000002659 #24	ENSGT01020000230412.A.c.b.d #25	ENSGT00390000018059.b #26	ENSGT00440000039028 #29	ENSGT00390000011644 #30	ENSGT00950000185149	ENSGT00950000183058.A.a #31	ENSGT00390000003645 #32	ENSGT00940000160248 #33	ENSGT00940000159723 #34	ENSGT00940000157831 #35	ENSGT00390000018208 #36	ENSGT00390000005914.a #37
Marmoset	MODERN SPECIES	9	KIAA1614 (ENSCJAG00000004342)	ENSCJAG00000087031	UHMK1 (ENSCJAG00000004291) #10	UAP1 (ENSCJAG00000004264) #11	DDR2 (ENSCJAG00000004221) #12	CCDC190 (ENSCJAG00000004163) #14	HSD17B7 (ENSCJAG00000004176) #13	RGS4 (ENSCJAG00000073413) #15	NUF2 (ENSCJAG00000004050) #17	ENSCJAG00000079672	PBX1 (ENSCJAG00000004712) #18	ENSCJAG00000086352	LMX1A (ENSCJAG00000082002) #19	RXRG (ENSCJAG00000004656) #20	LRRC52 (ENSCJAG00000004653) #21	MGST3 (ENSCJAG00000004619) #22	ENSCJAG00000004575 #23	TMCO1 (ENSCJAG00000004561) #24	ENSCJAG00000004523 #25	FAM78B (ENSCJAG00000004511) #26	ENSCJAG00000062126	POGK (ENSCJAG00000048527) #29	TADA1 (ENSCJAG00000079711) #30	ENSCJAG00000069024	ILDR2 (ENSCJAG00000017212) #31	MAEL (ENSCJAG00000017185) #32	GPA33 (ENSCJAG00000017174) #33	STYXL2 (ENSCJAG00000017165) #34	POU2F1 (ENSCJAG00000017095) #35	CD247 (ENSCJAG00000017048) #36	CREG1 (ENSCJAG00000077028) #37
Cebidae_a	ANCESTRAL SPECIES	6	ENSGT00940000163577	ENSGT00940000157769 #10	ENSGT00940000153464.A.b #11	ENSGT00940000154842.a.b #12	ENSGT00390000013340 #13	ENSGT00390000014067 #14	ENSGT00940000159036 #15	ENSGT00940000157380 #16	ENSGT00390000004199 #17	ENSGT00950000183210.d.a.c.b.b.a.b.b.a.b	ENSGT00940000154205.h.bb.a	ENSGT00940000154374.b #18	ENSGT00940000157774 #19	ENSGT00940000161269 #20	ENSGT00940000156906 #21	ENSGT00390000008608 #22	ENSGT00940000162687 #23	ENSGT00940000163309	ENSGT00390000002659 #24	ENSGT01020000230412.A.c.b.d #25	ENSGT00390000018059.b #26	ENSGT00440000039028 #29	ENSGT00390000011644 #30	ENSGT00950000183058.A.a #31	ENSGT00390000003645 #32	ENSGT00940000160248 #33	ENSGT00940000159723 #34	ENSGT00940000157831 #35	ENSGT00390000018208 #36	ENSGT00390000005914.a #37	ENSGT00940000153997.b.a.b
Bolivian squirrel monkey	MODERN SPECIES	69													LMX1A (ENSSBOG00000030847) #19	RXRG (ENSSBOG00000025019) #20	LRRC52 (ENSSBOG00000029997) #21	MGST3 (ENSSBOG00000001171) #22	ALDH9A1 (ENSSBOG00000027046)	UCK2 (ENSSBOG00000031663) #25	TMCO1 (ENSSBOG00000033156) #24	FAM78B (ENSSBOG00000034137) #26	POGK (ENSSBOG00000019300) #29	TADA1 (ENSSBOG00000025874) #30	ILDR2 (ENSSBOG00000028013) #31	MAEL (ENSSBOG00000027193) #32	GPA33 (ENSSBOG00000018974) #33	STYXL2 (ENSSBOG00000035084) #34	POU2F1 (ENSSBOG00000025169) #35	CD247 (ENSSBOG00000026118) #36	CREG1 (ENSSBOG00000030869) #37	RCSD1 (ENSSBOG00000032056)	MPZL1 (ENSSBOG00000032480)
Capuchin	DUPLICATION
Capuchin	MODERN SPECIES	84							RGS4 (ENSCCAG00000029323) #15	RGS5 (ENSCCAG00000023580) #16	NUF2 (ENSCCAG00000036193) #17	ENSCCAG00000034086	ENSCCAG00000026512	PBX1 (ENSCCAG00000020895) #18	LMX1A (ENSCCAG00000023901) #19	RXRG (ENSCCAG00000035383) #20	LRRC52 (ENSCCAG00000034298) #21	ENSCCAG00000036520 #22	AK2 (ENSCCAG00000034083)	ENSCCAG00000035062 #23	TMCO1 (ENSCCAG00000026618) #24	ENSCCAG00000003454	UCK2 (ENSCCAG00000017279) #25	FAM78B (ENSCCAG00000029557) #26	POGK (ENSCCAG00000021290) #29	TADA1 (ENSCCAG00000033176) #30	ILDR2 (ENSCCAG00000000050) #31	MAEL (ENSCCAG00000033367) #32	GPA33 (ENSCCAG00000019822) #33	STYXL2 (ENSCCAG00000023849) #34	POU2F1 (ENSCCAG00000026222) #35	CD247 (ENSCCAG00000036679) #36	CREG1 (ENSCCAG00000029390) #37
Capuchin	MODERN SPECIES	87	LIN28A (ENSCCAG00000012963)	ZNF683 (ENSCCAG00000016907)	CRYBG2 (ENSCCAG00000036704)	CD52 (ENSCCAG00000036481)	UBXN11 (ENSCCAG00000027516)	SH3BGRL3 (ENSCCAG00000033774)	CEP85 (ENSCCAG00000017685)	CATSPER4 (ENSCCAG00000031230)	CNKSR1 (ENSCCAG00000020078)	ZNF593OS (ENSCCAG00000033003)	ZNF593 (ENSCCAG00000030595)	C1orf232 (ENSCCAG00000025437)	FAM110D (ENSCCAG00000018942)	ENSCCAG00000026100	PDIK1L (ENSCCAG00000033260)	ENSCCAG00000019830 #22	TRIM63 (ENSCCAG00000034250)	SLC30A2 (ENSCCAG00000021276)	EXTL1 (ENSCCAG00000033300)	PAFAH2 (ENSCCAG00000024562)	ENSCCAG00000028161	AUNIP (ENSCCAG00000030698)	MTFR1L (ENSCCAG00000012327)	ENSCCAG00000031215	MAN1C1 (ENSCCAG00000024764)	LDLRAP1 (ENSCCAG00000026769)	MACO1 (ENSCCAG00000030283)	ENSCCAG00000020865	TMEM50A (ENSCCAG00000028013)	RSRP1 (ENSCCAG00000033350)	SYF2 (ENSCCAG00000022459)
Mas night monkey	MODERN SPECIES	893	UHMK1 (ENSANAG00000022526) #10	UAP1 (ENSANAG00000027960) #11	DDR2 (ENSANAG00000022647) #12	HSD17B7 (ENSANAG00000023761) #13	CCDC190 (ENSANAG00000023182) #14	RGS4 (ENSANAG00000019849) #15	RGS5 (ENSANAG00000026600) #16	NUF2 (ENSANAG00000027298) #17	ENSANAG00000027887	ENSANAG00000013627	ENSANAG00000027656	PBX1 (ENSANAG00000026588) #18	LMX1A (ENSANAG00000020495) #19	RXRG (ENSANAG00000031942) #20	LRRC52 (ENSANAG00000029215) #21	MGST3 (ENSANAG00000022897) #22	ALDH9A1 (ENSANAG00000029992)	TMCO1 (ENSANAG00000021952) #24	UCK2 (ENSANAG00000031914) #25
Tarsier	MODERN SPECIES	6740													LMX1A (ENSTSYG00000012930) #19	RXRG (ENSTSYG00000002120) #20	LRRC52 (ENSTSYG00000005099) #21	MGST3 (ENSTSYG00000005435) #22	ALDH9A1 (ENSTSYG00000011313) #23
Strepsirrhini	ANCESTRAL SPECIES		ENSGT00390000007598 #7	ENSGT00510000046975.b.t ##8	ENSGT00940000163577	ENSGT00940000157769 #10	ENSGT00940000153464.A.b #11	ENSGT00940000154842.a.b #12	ENSGT00390000013340 #13	ENSGT00390000014067 #14	ENSGT00940000159036 #15	ENSGT00940000157380 #16	ENSGT00390000004199 #17	ENSGT00940000154374.b #18	ENSGT00940000157774 #19	ENSGT00940000161269 #20	ENSGT00940000156906 #21	ENSGT00390000008608 #22	ENSGT00940000162687 #23	ENSGT00940000163309	ENSGT00390000002659 #24	ENSGT01020000230412.A.c.b.d.a #25	ENSGT00390000018059.b #26	ENSGT00940000162904 #28	ENSGT00940000160836.d #27	ENSGT00440000039028 #29	ENSGT00390000011644 #30	ENSGT00950000185149	ENSGT00950000183058.A.a #31	ENSGT00390000003645 #32	ENSGT00940000160248 #33	ENSGT00940000159723 #34	ENSGT00940000157831 #35
Lemuriformes	ANCESTRAL SPECIES	11	ENSGT00390000007598 #7	ENSGT00510000046975.b.t ##8	ENSGT00940000163577	ENSGT00940000157769 #10	ENSGT00940000153464.A.b #11	ENSGT00940000154842.a.b #12	ENSGT00390000013340 #13	ENSGT00390000014067 #14	ENSGT00940000159036 #15	ENSGT00940000157380 #16	ENSGT00390000004199 #17	ENSGT00940000154374.b #18	ENSGT00940000157774 #19	ENSGT00940000161269 #20	ENSGT00940000156906 #21	ENSGT00390000008608 #22	ENSGT00940000162687 #23	ENSGT00940000163309	ENSGT00390000002659 #24	ENSGT01020000230412.A.c.b.d.a #25	ENSGT00390000018059.b #26	ENSGT00940000162904 #28	ENSGT00940000160836.d #27	ENSGT00440000039028 #29	ENSGT00390000011644 #30	ENSGT00950000185149	ENSGT00950000183058.A.a #31	ENSGT00390000003645 #32	ENSGT00940000160248 #33	ENSGT00940000159723 #34	ENSGT00940000157831 #35
Mouse lemur	MODERN SPECIES	11	SH2D1B (ENSMICG00000000048)	ENSMICG00000036205	ENSMICG00000038236	ENSMICG00000017256 #10	UAP1 (ENSMICG00000028400) #11	DDR2 (ENSMICG00000009930) #12	HSD17B7 (ENSMICG00000009945) #13	CCDC190 (ENSMICG00000041856) #14	RGS4 (ENSMICG00000036693) #15	RGS5 (ENSMICG00000007854) #16	NUF2 (ENSMICG00000014089) #17	PBX1 (ENSMICG00000001280) #18	LMX1A (ENSMICG00000041533) #19	RXRG (ENSMICG00000009970) #20	LRRC52 (ENSMICG00000041448) #21	MGST3 (ENSMICG00000008309) #22	ENSMICG00000008315 #23	ENSMICG00000037106	TMCO1 (ENSMICG00000004363) #24	ENSMICG00000044256	UCK2 (ENSMICG00000005282) #25	FAM78B (ENSMICG00000041877) #26	ENSMICG00000043854	ENSMICG00000041719	ENSMICG00000032977 #27	POGK (ENSMICG00000011758) #29	TADA1 (ENSMICG00000042075) #30	ILDR2 (ENSMICG00000011778) #31	MAEL (ENSMICG00000034747) #32	GPA33 (ENSMICG00000007836) #33	STYXL2 (ENSMICG00000048069) #34
Lemuriformes_a	ANCESTRAL SPECIES	57	ENSGT00390000007598 #7	ENSGT00510000046975.b.t ##8	ENSGT00940000163577	ENSGT00940000157769 #10	ENSGT00940000153464.A.b #11	ENSGT00940000154842.a.b #12	ENSGT00390000013340 #13	ENSGT00390000014067 #14	ENSGT00940000159036 #15	ENSGT00940000157380 #16	ENSGT00390000004199 #17	ENSGT00940000154374.b #18	ENSGT00940000157774 #19	ENSGT00940000161269 #20	ENSGT00940000156906 #21	ENSGT00390000008608 #22	ENSGT00940000162687 #23	ENSGT00940000163309	ENSGT00390000002659 #24	ENSGT01020000230412.A.c.b.d.a #25
Greater bamboo lemur	MODERN SPECIES	571								CCDC190 (ENSPSMG00000005002) #14	RGS4 (ENSPSMG00000004985) #15	RGS5 (ENSPSMG00000004937) #16	NUF2 (ENSPSMG00000004908) #17	PBX1 (ENSPSMG00000004816) #18	LMX1A (ENSPSMG00000004765) #19	RXRG (ENSPSMG00000004720) #20	LRRC52 (ENSPSMG00000004663) #21	MGST3 (ENSPSMG00000004651) #22	ENSPSMG00000004620 #23	TMCO1 (ENSPSMG00000004579) #24	ENSPSMG00000004535 #25
Coquerels sifaka	DUPLICATION
Coquerels sifaka	MODERN SPECIES	163	SPATA46 (ENSPCOG00000014075) #7	C1orf226 (ENSPCOG00000017829) ##8	SH2D1B (ENSPCOG00000000648)	UHMK1 (ENSPCOG00000025540) #10	UAP1 (ENSPCOG00000012712) #11	DDR2 (ENSPCOG00000021216) #12	HSD17B7 (ENSPCOG00000024083) #13	CCDC190 (ENSPCOG00000014443) #14	RGS4 (ENSPCOG00000003407) #15	RGS5 (ENSPCOG00000020036) #16	NUF2 (ENSPCOG00000021915) #17	PBX1 (ENSPCOG00000015286) #18	LMX1A (ENSPCOG00000025376) #19	RXRG (ENSPCOG00000021935) #20	LRRC52 (ENSPCOG00000007315) #21	ENSPCOG00000021898 #22	ALDH9A1 (ENSPCOG00000020786)	TMCO1 (ENSPCOG00000025294) #24	UCK2 (ENSPCOG00000015853) #25
Coquerels sifaka	MODERN SPECIES	430	SSBP1 (ENSPCOG00000021009)	WEE2 (ENSPCOG00000016620)	DENND11 (ENSPCOG00000005094)	AGK (ENSPCOG00000025807)	TMEM178B (ENSPCOG00000020472)	ENSPCOG00000015683	BRAF (ENSPCOG00000024467)	NDUFB2 (ENSPCOG00000008454)	ENSPCOG00000018417	ADCK2 (ENSPCOG00000019938)	DENND2A (ENSPCOG00000012423)	ENSPCOG00000023686	ENSPCOG00000002890	RAB19 (ENSPCOG00000019113)	SLC37A3 (ENSPCOG00000014061)	ENSPCOG00000016270 #22	KDM7A (ENSPCOG00000027250)	PARP12 (ENSPCOG00000016258)	TBXAS1 (ENSPCOG00000027330)	HIPK2 (ENSPCOG00000011246)	CLEC2L (ENSPCOG00000017143)	KLRG2 (ENSPCOG00000020022)	LUC7L2 (ENSPCOG00000006775)	FMC1 (ENSPCOG00000009131)	UBN2 (ENSPCOG00000013100)
Bushbaby	MODERN SPECIES	131	ENSOGAG00000031249 #9	ENSOGAG00000032240	ENSOGAG00000026160	UHMK1 (ENSOGAG00000016110) #10	UAP1 (ENSOGAG00000016117) #11	DDR2 (ENSOGAG00000010985) #12	HSD17B7 (ENSOGAG00000010994) #13	CCDC190 (ENSOGAG00000010997) #14	RGS4 (ENSOGAG00000012669) #15	RGS5 (ENSOGAG00000012674) #16	NUF2 (ENSOGAG00000011652) #17	PBX1 (ENSOGAG00000000132) #18	LMX1A (ENSOGAG00000011315) #19	RXRG (ENSOGAG00000011318) #20	LRRC52 (ENSOGAG00000026494) #21	MGST3 (ENSOGAG00000006196) #22	ENSOGAG00000006198 #23	TMCO1 (ENSOGAG00000011784) #24	UCK2 (ENSOGAG00000014716) #25	ENSOGAG00000032359	FAM78B (ENSOGAG00000014719) #26	ENSOGAG00000032561 #28	ENSOGAG00000007611 #27	POGK (ENSOGAG00000007615) #29	TADA1 (ENSOGAG00000007621) #30	ILDR2 (ENSOGAG00000007624) #31	MAEL (ENSOGAG00000007627) #32	GPA33 (ENSOGAG00000002120) #33	STYXL2 (ENSOGAG00000034721) #34	POU2F1 (ENSOGAG00000005069) #35	CD247 (ENSOGAG00000029232) #36
Laurasiatheria	ANCESTRAL SPECIES		ENSGT00900000143287	ENSGT00940000157769 #10	ENSGT00940000153464.A.b #11	ENSGT00940000154842.a.b #12	ENSGT00390000013340 #13	ENSGT00390000014067 #14	ENSGT00940000159036 #15	ENSGT00910000148347	ENSGT00940000157380 #16	ENSGT00390000004199 #17	ENSGT00940000163762.a.a	ENSGT00940000154374.b #18	ENSGT00940000157774 #19	ENSGT00940000161269 #20	ENSGT00940000156906 #21	ENSGT00390000008608 #22	ENSGT00940000162687 #23	ENSGT00940000163309	ENSGT00390000002659 #24	ENSGT01020000230412.A.c.b.d #25	ENSGT00390000018059.b #26	ENSGT00940000162904 #28	ENSGT00440000039028 #29	ENSGT00390000011644 #30	ENSGT00950000185149	ENSGT00950000183058.A.a #31	ENSGT00390000003645 #32	ENSGT00940000160248 #33	ENSGT00940000159723 #34	ENSGT00940000157831 #35	ENSGT00390000018208 #36
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00390000008608 #22
Hedgehog	MODERN SPECIES	3983																MGST3 (ENSEEUG00000015971) #22
Laurasiatheria_a	ANCESTRAL SPECIES		ENSGT00900000143287	ENSGT00940000157769 #10	ENSGT00940000153464.A.b #11	ENSGT00940000154842.a.b #12	ENSGT00390000013340 #13	ENSGT00390000014067 #14	ENSGT00940000159036 #15	ENSGT00910000148347	ENSGT00940000157380 #16	ENSGT00390000004199 #17	ENSGT00940000163762.a.a	ENSGT00940000154374.b #18	ENSGT00940000157774 #19	ENSGT00940000161269 #20	ENSGT00940000156906 #21	ENSGT00390000008608 #22	ENSGT00940000162687 #23	ENSGT00940000163309	ENSGT00390000002659 #24	ENSGT01020000230412.A.c.b.d #25	ENSGT00390000018059.b #26	ENSGT00940000162904 #28	ENSGT00440000039028 #29	ENSGT00390000011644 #30	ENSGT00950000185149	ENSGT00950000183058.A.a #31	ENSGT00390000003645 #32	ENSGT00940000160248 #33	ENSGT00940000159723 #34	ENSGT00940000157831 #35	ENSGT00390000018208 #36
Artiodactyla	ANCESTRAL SPECIES		ENSGT00940000163577	ENSGT00940000168189	ENSGT00940000157769 #10	ENSGT00940000153464.A.b #11	ENSGT00940000154842.a.b #12	ENSGT00390000013340 #13	ENSGT00390000014067 #14	ENSGT00940000159036 #15	ENSGT00910000148347	ENSGT00940000157380 #16	ENSGT00390000004199 #17	ENSGT00940000154374.b #18	ENSGT00940000157774 #19	ENSGT00940000161269 #20	ENSGT00940000156906 #21	ENSGT00390000008608 #22	ENSGT00940000162687 #23	ENSGT00390000002659 #24	ENSGT01020000230412.A.c.b.d #25	ENSGT00390000018059.b #26	ENSGT00940000162904 #28	ENSGT00440000039028 #29	ENSGT00390000011644 #30	ENSGT00950000185149	ENSGT00950000183058.A.a #31	ENSGT00390000003645 #32	ENSGT00940000160248 #33	ENSGT00940000159723 #34	ENSGT00940000157831 #35	ENSGT00390000018208 #36	ENSGT00390000005914.a #37
Suina	ANCESTRAL SPECIES	8	ENSGT00510000046975.b.t ##8	ENSGT00940000163577	ENSGT00940000157769 #10	ENSGT00940000153464.A.b #11	ENSGT00940000154842.a.b #12	ENSGT00390000013340 #13	ENSGT00390000014067 #14	ENSGT00940000159036 #15	ENSGT00910000148347	ENSGT00940000157380 #16	ENSGT00390000004199 #17	ENSGT00940000154374.b #18	ENSGT00940000157774 #19	ENSGT00940000161269 #20	ENSGT00940000156906 #21	ENSGT00390000008608 #22	ENSGT00940000162687 #23	ENSGT00390000002659 #24	ENSGT01020000230412.A.c.b.d #25	ENSGT00390000018059.b #26	ENSGT00940000162904 #28	ENSGT00440000039028 #29	ENSGT00390000011644 #30	ENSGT00950000183058.A.a #31	ENSGT00390000003645 #32	ENSGT00940000160248 #33	ENSGT00940000159723 #34	ENSGT00940000157831 #35	ENSGT00390000018208 #36	ENSGT00390000005914.a #37	ENSGT00940000153997.b.a.b
Pig	MODERN SPECIES	12	UHMK1 (ENSSSCG00000006342) #10	UAP1 (ENSSSCG00000006340) #11	DDR2 (ENSSSCG00000006338) #12	HSD17B7 (ENSSSCG00000006337) #13	ENSSSCG00000041209	CCDC190 (ENSSSCG00000006336) #14	RGS4 (ENSSSCG00000006335) #15	ENSSSCG00000047766	RGS5 (ENSSSCG00000037821) #16	NUF2 (ENSSSCG00000006333) #17	ENSSSCG00000061621 #18	ENSSSCG00000062927 #18	LMX1A (ENSSSCG00000006329) #19	RXRG (ENSSSCG00000006328) #20	LRRC52 (ENSSSCG00000029977) #21	MGST3 (ENSSSCG00000006325) #22	ENSSSCG00000006324 #23	TMCO1 (ENSSSCG00000037314) #24	UCK2 (ENSSSCG00000039867) #25	FAM78B (ENSSSCG00000006321) #26	ENSSSCG00000006320 #28	ENSSSCG00000060092	POGK (ENSSSCG00000006319) #29	TADA1 (ENSSSCG00000006318) #30	ILDR2 (ENSSSCG00000035124) #31	MAEL (ENSSSCG00000006316) #32	GPA33 (ENSSSCG00000006312) #33	STYXL2 (ENSSSCG00000006311) #34	POU2F1 (ENSSSCG00000006310) #35	CD247 (ENSSSCG00000006309) #36	CREG1 (ENSSSCG00000006308) #37
Chacoan peccary	MODERN SPECIES	774	SPATA46 (ENSCWAG00000004799) #7	C1orf226 (ENSCWAG00000004783) ##8	SH2D1B (ENSCWAG00000004757)	UHMK1 (ENSCWAG00000004724) #10	UAP1 (ENSCWAG00000004643) #11	DDR2 (ENSCWAG00000004578) #12	HSD17B7 (ENSCWAG00000004543) #13	CCDC190 (ENSCWAG00000004494) #14	RGS4 (ENSCWAG00000004377) #15	RGS5 (ENSCWAG00000004327) #16	NUF2 (ENSCWAG00000004192) #17	PBX1 (ENSCWAG00000004074) #18	LMX1A (ENSCWAG00000004006) #19	RXRG (ENSCWAG00000003855) #20	LRRC52 (ENSCWAG00000003811) #21	MGST3 (ENSCWAG00000012645) #22	ENSCWAG00000012601 #23	TMCO1 (ENSCWAG00000012548) #24	UCK2 (ENSCWAG00000012503) #25	FAM78B (ENSCWAG00000012477) #26	POGK (ENSCWAG00000012438) #29	TADA1 (ENSCWAG00000012410) #30
Artiodactyla_a	ANCESTRAL SPECIES		ENSGT00940000163577	ENSGT00940000168189	ENSGT00900000143287	ENSGT00940000157769 #10	ENSGT00940000153464.A.b #11	ENSGT00940000154842.a.b #12	ENSGT00390000013340 #13	ENSGT00390000014067 #14	ENSGT00940000159036 #15	ENSGT00940000157380 #16	ENSGT00390000004199 #17	ENSGT00940000154374.b #18	ENSGT00940000157774 #19	ENSGT00940000161269 #20	ENSGT00940000156906 #21	ENSGT00390000008608 #22	ENSGT00940000162687 #23	ENSGT00390000002659 #24	ENSGT01020000230412.A.c.b.d #25	ENSGT00390000018059.b #26	ENSGT00940000162904 #28	ENSGT00440000039028 #29	ENSGT00390000011644 #30	ENSGT00950000185149	ENSGT00950000183058.A.a #31	ENSGT00390000003645 #32	ENSGT00940000160248 #33	ENSGT00940000159723 #34	ENSGT00940000157831 #35	ENSGT00390000018208 #36	ENSGT00390000005914.a #37
Camelidae	ANCESTRAL SPECIES	6	ENSGT00390000007598 #7	ENSGT00510000046975.b.t ##8	ENSGT00940000163577	ENSGT00940000157769 #10	ENSGT00940000153464.A.b #11	ENSGT00940000154842.a.b #12	ENSGT00390000013340 #13	ENSGT00390000014067 #14	ENSGT00940000159036 #15	ENSGT00940000157380 #16	ENSGT00390000004199 #17	ENSGT00940000154374.b #18	ENSGT00940000157774 #19	ENSGT00940000161269 #20	ENSGT00940000156906 #21	ENSGT00390000008608 #22	ENSGT00940000162687 #23	ENSGT00390000002659 #24	ENSGT01020000230412.A.c.b.d #25	ENSGT00390000018059.b #26	ENSGT00940000160836.d #27	ENSGT00440000039028 #29	ENSGT00390000011644 #30	ENSGT00950000183058.A.a #31	ENSGT00390000003645 #32	ENSGT00940000160248 #33	ENSGT00940000159723 #34	ENSGT00940000157831 #35	ENSGT00390000018208 #36	ENSGT00390000005914.a #37	ENSGT00940000153997.b.a.b
Arabian camel	MODERN SPECIES	13	SH2D1B (ENSCDRG00005003706)	ENSCDRG00005003756	UHMK1 (ENSCDRG00005003824) #10	UAP1 (ENSCDRG00005003860) #11	DDR2 (ENSCDRG00005003991) #12	HSD17B7 (ENSCDRG00005004054) #13	CCDC190 (ENSCDRG00005004083) #14	RGS4 (ENSCDRG00005004118) #15	RGS5 (ENSCDRG00005004164) #16	NUF2 (ENSCDRG00005004229) #17	ENSCDRG00005004309 #18	ENSCDRG00005004337 #18	LMX1A (ENSCDRG00005004381) #19	RXRG (ENSCDRG00005004406) #20	LRRC52 (ENSCDRG00005004441) #21	MGST3 (ENSCDRG00005004470) #22	ENSCDRG00005004490 #23	TMCO1 (ENSCDRG00005004596) #24	UCK2 (ENSCDRG00005004673) #25	FAM78B (ENSCDRG00005004795) #26	ENSCDRG00005004817 #27	POGK (ENSCDRG00005004914) #29	TADA1 (ENSCDRG00005004923) #30	ILDR2 (ENSCDRG00005004956) #31	MAEL (ENSCDRG00005005084) #32	GPA33 (ENSCDRG00005005166) #33	STYXL2 (ENSCDRG00005005183) #34	POU2F1 (ENSCDRG00005005211) #35	CD247 (ENSCDRG00005005314) #36	CREG1 (ENSCDRG00005005365) #37	RCSD1 (ENSCDRG00005005407)
Alpaca	MODERN SPECIES	2434												PBX1 (ENSVPAG00000004575) #18	LMX1A (ENSVPAG00000004576) #19	RXRG (ENSVPAG00000004578) #20	LRRC52 (ENSVPAG00000004580) #21	MGST3 (ENSVPAG00000004582) #22	ENSVPAG00000004584 #23	TMCO1 (ENSVPAG00000004587) #24
Artiodactyla_b	ANCESTRAL SPECIES		ENSGT00510000046975.b.t ##8	ENSGT00940000163577	ENSGT00940000168189	ENSGT00940000157769 #10	ENSGT00940000153464.A.b #11	ENSGT00940000154842.a.b #12	ENSGT00390000013340 #13	ENSGT00390000014067 #14	ENSGT00940000159036 #15	ENSGT00940000157380 #16	ENSGT00390000004199 #17	ENSGT00940000154374.b #18	ENSGT00940000157774 #19	ENSGT00940000161269 #20	ENSGT00940000156906 #21	ENSGT00390000008608 #22	ENSGT00940000162687 #23	ENSGT00390000002659 #24	ENSGT01020000230412.A.c.b.d #25	ENSGT00390000018059.b #26	ENSGT00940000162904 #28	ENSGT00440000039028 #29	ENSGT00390000011644 #30	ENSGT00950000185149	ENSGT00950000183058.A.a #31	ENSGT00390000003645 #32	ENSGT00940000160248 #33	ENSGT00940000159723 #34	ENSGT00940000157831 #35	ENSGT00390000018208 #36	ENSGT00390000005914.a #37
Pecora	ANCESTRAL SPECIES	2	ENSGT00940000163577	ENSGT00900000143287	ENSGT00940000157769 #10	ENSGT00940000153464.A.b #11	ENSGT00940000154842.a.b #12	ENSGT00390000013340 #13	ENSGT00390000014067 #14	ENSGT00940000159036 #15	ENSGT00940000157380 #16	ENSGT00390000004199 #17	ENSGT00940000168561	ENSGT00940000154374.b #18	ENSGT00940000157774 #19	ENSGT00940000161269 #20	ENSGT00940000156906 #21	ENSGT00390000008608 #22	ENSGT00940000162687 #23	ENSGT00940000163309	ENSGT00390000002659 #24	ENSGT01020000230412.A.c.b.d #25	ENSGT00390000018059.b #26	ENSGT00940000162904 #28	ENSGT00440000039028 #29	ENSGT00390000011644 #30	ENSGT00950000185149	ENSGT00950000183058.A.a #31	ENSGT00390000003645 #32	ENSGT00940000160248 #33	ENSGT00940000159723 #34	ENSGT00940000157831 #35	ENSGT00390000018208 #36
Yarkand deer	MODERN SPECIES	12	NOS1AP (ENSCHYG00000005636) #8	SH2D1B (ENSCHYG00000005606)	UAP1 (ENSCHYG00000005397) #11	DDR2 (ENSCHYG00000005237) #12	ENSCHYG00000005162 #13	CCDC190 (ENSCHYG00000005115) #14	RGS4 (ENSCHYG00000005067) #15	RGS5 (ENSCHYG00000005022) #16	NUF2 (ENSCHYG00000004983) #17	ENSCHYG00000004964	PBX1 (ENSCHYG00000004877) #18	LMX1A (ENSCHYG00000004832) #19	RXRG (ENSCHYG00000004811) #20	ENSCHYG00000012897	LRRC52 (ENSCHYG00000012879) #21	MGST3 (ENSCHYG00000012749) #22	ALDH9A1 (ENSCHYG00000012639)	TMCO1 (ENSCHYG00000012575) #24	UCK2 (ENSCHYG00000012473) #25	FAM78B (ENSCHYG00000012392) #26
Percora_a	ANCESTRAL SPECIES	1	ENSGT00940000163577	ENSGT00900000143287	ENSGT00940000157769 #10	ENSGT00940000153464.A.b #11	ENSGT00940000154842.a.b #12	ENSGT00390000013340 #13	ENSGT00390000014067 #14	ENSGT00940000159036 #15	ENSGT00940000157380 #16	ENSGT00390000004199 #17	ENSGT00940000168561	ENSGT00940000154374.b #18	ENSGT00940000157774 #19	ENSGT00940000161269 #20	ENSGT00940000156906 #21	ENSGT00390000008608 #22	ENSGT00940000162687 #23	ENSGT00390000002659 #24	ENSGT01020000230412.A.c.b.d #25	ENSGT00390000018059.b #26	ENSGT00940000162904 #28	ENSGT00440000039028 #29	ENSGT00390000011644 #30	ENSGT00950000185149	ENSGT00950000183058.A.a #31	ENSGT00390000003645 #32	ENSGT00940000160248 #33	ENSGT00940000159723 #34	ENSGT00940000157831 #35	ENSGT00390000018208 #36	ENSGT00390000005914.a #37
Bovidae	ANCESTRAL SPECIES	1	ENSGT00940000163577	ENSGT00900000143287	ENSGT00940000157769 #10	ENSGT00940000153464.A.b #11	ENSGT00940000154842.a.b #12	ENSGT00390000013340 #13	ENSGT00390000014067 #14	ENSGT00940000159036 #15	ENSGT00940000157380 #16	ENSGT00390000004199 #17	ENSGT00940000168561.a	ENSGT00940000154374.b #18	ENSGT00940000157774 #19	ENSGT00940000161269 #20	ENSGT00940000156906 #21	ENSGT00390000008608 #22	ENSGT00940000162687 #23	ENSGT00390000002659 #24	ENSGT01020000230412.A.c.b.d #25	ENSGT00390000018059.b #26	ENSGT00940000162904 #28	ENSGT00440000039028 #29	ENSGT00390000011644 #30	ENSGT00950000185149	ENSGT00950000183058.A.a #31	ENSGT00390000003645 #32	ENSGT00940000160248 #33	ENSGT00940000159723 #34	ENSGT00940000157831 #35	ENSGT00390000018208 #36	ENSGT00390000005914.a #37
Bovinae	ANCESTRAL SPECIES	1	ENSGT00510000046975.b.t ##8	ENSGT00940000163577	ENSGT00940000157769 #10	ENSGT00940000153464.A.b #11	ENSGT00940000154842.a.b #12	ENSGT00390000013340 #13	ENSGT00390000014067 #14	ENSGT00940000159036 #15	ENSGT00940000157380 #16	ENSGT00390000004199 #17	ENSGT00940000168561.a	ENSGT00940000154374.b #18	ENSGT00940000157774 #19	ENSGT00940000161269 #20	ENSGT00940000156906 #21	ENSGT00390000008608 #22	ENSGT00940000162687 #23	ENSGT00940000163309	ENSGT00390000002659 #24	ENSGT01020000230412.A.c.b.d #25	ENSGT00390000018059.b #26	ENSGT00390000017043.l	ENSGT00940000162904 #28	ENSGT00440000039028 #29	ENSGT00390000011644 #30	ENSGT00950000185149	ENSGT00950000183058.A.a #31	ENSGT00390000003645 #32	ENSGT00940000160248 #33	ENSGT00940000159723 #34	ENSGT00940000157831 #35
Bos	ANCESTRAL SPECIES		ENSGT00510000046975.b.t ##8	ENSGT00940000163577	ENSGT00940000157769 #10	ENSGT00940000153464.A.b #11	ENSGT00940000154842.a.b #12	ENSGT00390000013340 #13	ENSGT00390000014067 #14	ENSGT00940000159036 #15	ENSGT00940000157380 #16	ENSGT00390000004199 #17	ENSGT00940000168561.a	ENSGT00940000154374.b #18	ENSGT00940000157774 #19	ENSGT00940000161269 #20	ENSGT00940000156906 #21	ENSGT00390000008608 #22	ENSGT00940000162687 #23	ENSGT00390000002659 #24	ENSGT01020000230412.A.c.b.d #25	ENSGT00390000018059.b #26	ENSGT00390000017043.l.a	ENSGT00940000162904 #28	ENSGT00440000039028 #29	ENSGT00390000011644 #30	ENSGT00950000185149	ENSGT00950000183058.A.a #31	ENSGT00390000003645 #32	ENSGT00940000160248 #33	ENSGT00940000159723 #34	ENSGT00940000157831 #35	ENSGT00390000018208 #36
Bos_a	ANCESTRAL SPECIES	83												ENSGT00940000154374.b #18	ENSGT00940000157774 #19	ENSGT00940000161269 #20	ENSGT00940000156906 #21	ENSGT00390000008608 #22	ENSGT00940000162687 #23	ENSGT00390000002659 #24	ENSGT01020000230412.A.c.b.d #25	ENSGT00390000018059.b #26	ENSGT00390000017043.l.a	ENSGT00940000162904 #28	ENSGT00440000039028 #29	ENSGT00390000011644 #30	ENSGT00950000183058.A.a #31	ENSGT00950000185149	ENSGT00390000003645 #32	ENSGT00940000160248 #33	ENSGT00940000159723 #34	ENSGT00940000157831 #35	ENSGT00390000018208 #36
Domestic yak	MODERN SPECIES	22	ENSBGRG00000002921	ENSBGRG00000002940	ENSBGRG00000002948	ENSBGRG00000002956	ENSBGRG00000002961	ENSBGRG00000002974	ENSBGRG00000002996	ENSBGRG00000003026	ENSBGRG00000003036	ENSBGRG00000003069	ENSBGRG00000003072	PBX1 (ENSBGRG00000003094) #18	LMX1A (ENSBGRG00000003204) #19	RXRG (ENSBGRG00000003237) #20	LRRC52 (ENSBGRG00000003288) #21	MGST3 (ENSBGRG00000003295) #22	ENSBGRG00000003312 #23	ENSBGRG00000003345	TMCO1 (ENSBGRG00000003360) #24	UCK2 (ENSBGRG00000003397) #25	FAM78B (ENSBGRG00000003426) #26	ENSBGRG00000005402	ENSBGRG00000005432 #28	POGK (ENSBGRG00000005801) #29	TADA1 (ENSBGRG00000005859) #30	ILDR2 (ENSBGRG00000005964) #31	ENSBGRG00000006378	MAEL (ENSBGRG00000006416) #32	GPA33 (ENSBGRG00000006655) #33	STYXL2 (ENSBGRG00000006675) #34	ENSBGRG00000006700
Wild yak	MODERN SPECIES	169															LRRC52 (ENSBMUG00000015910) #21	MGST3 (ENSBMUG00000015918) #22	ENSBMUG00000015923 #23	TMCO1 (ENSBMUG00000015947) #24	UCK2 (ENSBMUG00000015990) #25	FAM78B (ENSBMUG00000016033) #26	ENSBMUG00000016044
Bos_b	ANCESTRAL SPECIES	1	ENSGT00940000157769 #10	ENSGT00940000155477.n	ENSGT00940000153464.A.b #11	ENSGT00940000154842.a.b #12	ENSGT01100000263480.a.b.b.a.b.b.b.a.b.b.a	ENSGT00390000013340 #13	ENSGT00390000014067 #14	ENSGT00940000159036 #15	ENSGT00940000157380 #16	ENSGT00390000004199 #17	ENSGT00940000168561.a	ENSGT00940000154374.b #18	ENSGT00940000157774 #19	ENSGT00940000161269 #20	ENSGT00940000156906 #21	ENSGT00390000008608 #22	ENSGT00940000162687 #23	ENSGT00390000002659 #24	ENSGT01020000230412.A.c.b.d #25	ENSGT00390000018059.b #26	ENSGT00390000017043.l.a	ENSGT00940000162904 #28	ENSGT00440000039028 #29	ENSGT00390000011644 #30	ENSGT00950000185149	ENSGT00950000183058.A.a #31	ENSGT00390000003645 #32	ENSGT00940000160248 #33	ENSGT00940000159723 #34	ENSGT00940000157831 #35	ENSGT00390000018208 #36
Cow	MODERN SPECIES	22	UAP1 (ENSBTAG00000010206) #11	DDR2 (ENSBTAG00000004885) #12	ENSBTAG00000050123	HSD17B7 (ENSBTAG00000005976) #13	CCDC190 (ENSBTAG00000027425) #14	RGS4 (ENSBTAG00000046277) #15	RGS5 (ENSBTAG00000016341) #16	NUF2 (ENSBTAG00000007247) #17	ENSBTAG00000054045	ENSBTAG00000054238 #18	ENSBTAG00000053215 #18	PBX1 (ENSBTAG00000013801) #18	LMX1A (ENSBTAG00000012025) #19	RXRG (ENSBTAG00000016801) #20	LRRC52 (ENSBTAG00000001686) #21	MGST3 (ENSBTAG00000010265) #22	ALDH9A1 (ENSBTAG00000017852) #23	TMCO1 (ENSBTAG00000010009) #24	UCK2 (ENSBTAG00000044150) #25	FAM78B (ENSBTAG00000047468) #26	ENSBTAG00000022954	ENSBTAG00000022504 #28	POGK (ENSBTAG00000010775) #29	TADA1 (ENSBTAG00000010456) #30	ENSBTAG00000051301	ENSBTAG00000050910	ILDR2 (ENSBTAG00000019497) #31	MAEL (ENSBTAG00000016550) #32	GPA33 (ENSBTAG00000009148) #33	ENSBTAG00000049336	STYXL2 (ENSBTAG00000008652) #34
Hybrid Bos Indicus	MODERN SPECIES	22	ENSBIXG00005003536	HSD17B7 (ENSBIXG00005020979) #13	ENSBIXG00005003542	CCDC190 (ENSBIXG00005021019) #14	RGS4 (ENSBIXG00005006600) #15	ENSBIXG00005007356	ENSBIXG00005003576	RGS5 (ENSBIXG00005021199) #16	NUF2 (ENSBIXG00005021236) #17	ENSBIXG00005021294	ENSBIXG00005005540	PBX1 (ENSBIXG00005003636) #18	LMX1A (ENSBIXG00005021672) #19	RXRG (ENSBIXG00005007217) #20	LRRC52 (ENSBIXG00005021778) #21	MGST3 (ENSBIXG00005002616) #22	ENSBIXG00005021883 #23	UCK2 (ENSBIXG00005021934) #25	ENSBIXG00005021998 #26	ENSBIXG00005022024	ENSBIXG00005022363 #28	POGK (ENSBIXG00005022477) #29	TADA1 (ENSBIXG00005022507) #30	ENSBIXG00005022522	ENSBIXG00005022557	ILDR2 (ENSBIXG00005007379) #31	MAEL (ENSBIXG00005022817) #32	GPA33 (ENSBIXG00005022858) #33	STYXL2 (ENSBIXG00005022907) #34	POU2F1 (ENSBIXG00005005555) #35	CD247 (ENSBIXG00005004004) #36
American bison	DUPLICATION
American bison	MODERN SPECIES	3219											ENSBBBG00000007026 #18	ENSBBBG00000012787 #18	LMX1A (ENSBBBG00000012770) #19	RXRG (ENSBBBG00000012757) #20	LRRC52 (ENSBBBG00000012749) #21	ENSBBBG00000002461 #22	ALDH9A1 (ENSBBBG00000002457)	TMCO1 (ENSBBBG00000012733) #24	ENSBBBG00000012725 #25	ENSBBBG00000002453 #25	FAM78B (ENSBBBG00000012713) #26	ENSBBBG00000001817
American bison	MODERN SPECIES	3377	MYF5 (ENSBBBG00000005327)	LIN7A (ENSBBBG00000019615)	ACSS3 (ENSBBBG00000019602)	PPFIA2 (ENSBBBG00000006966)	ENSBBBG00000004945	CCDC59 (ENSBBBG00000019197)	METTL25 (ENSBBBG00000004939)	TMTC2 (ENSBBBG00000009162)	SLC6A15 (ENSBBBG00000004924)	TSPAN19 (ENSBBBG00000019123)	LRRIQ1 (ENSBBBG00000004903)	ALX1 (ENSBBBG00000004860)	RASSF9 (ENSBBBG00000019025)	NTS (ENSBBBG00000019020)	MGAT4C (ENSBBBG00000004848)	ENSBBBG00000004839 #22	C12orf50 (ENSBBBG00000004827)	C12orf29 (ENSBBBG00000004809)	CEP290 (ENSBBBG00000018938)	TMTC3 (ENSBBBG00000004692)	ENSBBBG00000004680	KITLG (ENSBBBG00000004678)	DUSP6 (ENSBBBG00000004673)	POC1B (ENSBBBG00000018702)	ATP2B1 (ENSBBBG00000007464)	ENSBBBG00000018566	CCER1 (ENSBBBG00000004582)	EPYC (ENSBBBG00000018560)	KERA (ENSBBBG00000008352)	LUM (ENSBBBG00000018550)	DCN (ENSBBBG00000018531)
Caprinae	ANCESTRAL SPECIES	49	ENSGT00390000007598 #7	ENSGT00940000163577	ENSGT00900000143287	ENSGT00940000157769 #10	ENSGT00940000153464.A.b #11	ENSGT00940000154842.a.b #12	ENSGT00390000013340 #13	ENSGT00390000014067 #14	ENSGT00940000159036 #15	ENSGT00940000157380 #16	ENSGT00390000004199 #17	ENSGT00940000154374.b #18	ENSGT00940000157774 #19	ENSGT00940000161269 #20	ENSGT00940000156906 #21	ENSGT00390000008608 #22	ENSGT00940000162687 #23	ENSGT00390000002659 #24	ENSGT01020000230412.A.c.b.d #25	ENSGT00390000018059.b #26	ENSGT00940000162904 #28	ENSGT00440000039028 #29	ENSGT00390000011644 #30	ENSGT00950000183058.A.a #31	ENSGT00390000003645 #32	ENSGT00940000160248 #33	ENSGT00940000159723 #34	ENSGT00940000157831 #35	ENSGT00390000018208 #36	ENSGT00390000005914.a #37	ENSGT00940000153997.b.a.b
Rambouillet Sheep	MODERN SPECIES		UHMK1 (ENSOARG00020001187) #10	UAP1 (ENSOARG00020001261) #11	DDR2 (ENSOARG00020001363) #12	HSD17B7 (ENSOARG00020001382) #13	CCDC190 (ENSOARG00020001404) #14	RGS4 (ENSOARG00020001430) #15	ENSOARG00020001471	RGS5 (ENSOARG00020001477) #16	NUF2 (ENSOARG00020001492) #17	ENSOARG00020001519	PBX1 (ENSOARG00020001579) #18	LMX1A (ENSOARG00020001833) #19	RXRG (ENSOARG00020001851) #20	ENSOARG00020001878	LRRC52 (ENSOARG00020001888) #21	MGST3 (ENSOARG00020001904) #22	ENSOARG00020001921 #23	UCK2 (ENSOARG00020001957) #25	FAM78B (ENSOARG00020001972) #26	ENSOARG00020001986 #28	POGK (ENSOARG00020002000) #29	TADA1 (ENSOARG00020002011) #30	ILDR2 (ENSOARG00020002154) #31	MAEL (ENSOARG00020002619) #32	GPA33 (ENSOARG00020002684) #33	STYXL2 (ENSOARG00020002699) #34	POU2F1 (ENSOARG00020002732) #35	CD247 (ENSOARG00020002799) #36	CREG1 (ENSOARG00020002817) #37	RCSD1 (ENSOARG00020002827)	MPZL1 (ENSOARG00020002842)
Goat	MODERN SPECIES	22	DDR2 (ENSCHIG00000022077) #12	HSD17B7 (ENSCHIG00000006708) #13	CCDC190 (ENSCHIG00000016871) #14	RGS4 (ENSCHIG00000025217) #15	RGS5 (ENSCHIG00000022623) #16	NUF2 (ENSCHIG00000021734) #17	ENSCHIG00000010502	ENSCHIG00000027006	ENSCHIG00000000654	ENSCHIG00000024885 #18	ENSCHIG00000019761 #18	LMX1A (ENSCHIG00000022333) #19	RXRG (ENSCHIG00000026695) #20	LRRC52 (ENSCHIG00000022157) #21	ENSCHIG00000010668	MGST3 (ENSCHIG00000011626) #22	ENSCHIG00000021660 #23	TMCO1 (ENSCHIG00000026421) #24	UCK2 (ENSCHIG00000023693) #25	FAM78B (ENSCHIG00000015653) #26	ENSCHIG00000006658 #28	POGK (ENSCHIG00000022352) #29	TADA1 (ENSCHIG00000014712) #30	ILDR2 (ENSCHIG00000014960) #31	MAEL (ENSCHIG00000025356) #32	GPA33 (ENSCHIG00000014178) #33	STYXL2 (ENSCHIG00000027120) #34	ENSCHIG00000021939	ENSCHIG00000006606	POU2F1 (ENSCHIG00000026721) #35	CD247 (ENSCHIG00000006979) #36
Siberian musk deer	MODERN SPECIES	166												PBX1 (ENSMMSG00000000174) #18	LMX1A (ENSMMSG00000000094) #19	RXRG (ENSMMSG00000000066) #20	LRRC52 (ENSMMSG00000000023) #21	MGST3 (ENSMMSG00000020347) #22	ENSMMSG00000020315	ENSMMSG00000020287 #23	TMCO1 (ENSMMSG00000020229) #24	UCK2 (ENSMMSG00000020174) #25	FAM78B (ENSMMSG00000020152) #26	ENSMMSG00000018130 #28	ENSMMSG00000018006	ENSMMSG00000017937 #27	POGK (ENSMMSG00000017901) #29	TADA1 (ENSMMSG00000017875) #30	ENSMMSG00000017839	ENSMMSG00000017800	ILDR2 (ENSMMSG00000016487) #31	MAEL (ENSMMSG00000016220) #32	GPA33 (ENSMMSG00000016152) #33
Cetacea	ANCESTRAL SPECIES		ENSGT00510000046975.b.t ##8	ENSGT00940000163577	ENSGT00940000168189	ENSGT00940000157769 #10	ENSGT00940000153464.A.b #11	ENSGT00940000154842.a.b #12	ENSGT00390000013340 #13	ENSGT00390000014067 #14	ENSGT00940000159036 #15	ENSGT00940000157380 #16	ENSGT00390000004199 #17	ENSGT00940000154374.b #18	ENSGT00940000157774 #19	ENSGT00940000161269 #20	ENSGT00940000156906 #21	ENSGT00390000008608 #22	ENSGT00940000162687 #23	ENSGT00390000002659 #24	ENSGT01020000230412.A.c.b.d #25	ENSGT00390000018059.b #26	ENSGT00940000162904 #28	ENSGT00440000039028 #29	ENSGT00390000011644 #30	ENSGT00950000183058.A.a #31	ENSGT00390000003645 #32	ENSGT00940000160248 #33	ENSGT00940000159723 #34	ENSGT00940000157831 #35	ENSGT00390000018208 #36	ENSGT00390000005914.a #37	ENSGT00940000153997.b.a.b.g
Blue whale	MODERN SPECIES		ENSBMSG00010007363 #9	ENSBMSG00010007382	ENSBMSG00010007405	UHMK1 (ENSBMSG00010007422) #10	UAP1 (ENSBMSG00010007451) #11	DDR2 (ENSBMSG00010007502) #12	HSD17B7 (ENSBMSG00010007520) #13	CCDC190 (ENSBMSG00010007562) #14	RGS4 (ENSBMSG00010007582) #15	RGS5 (ENSBMSG00010007671) #16	NUF2 (ENSBMSG00010007687) #17	PBX1 (ENSBMSG00010007714) #18	LMX1A (ENSBMSG00010007743) #19	RXRG (ENSBMSG00010007753) #20	LRRC52 (ENSBMSG00010007774) #21	MGST3 (ENSBMSG00010007783) #22	ENSBMSG00010007800 #23	TMCO1 (ENSBMSG00010007811) #24	UCK2 (ENSBMSG00010007821) #25	FAM78B (ENSBMSG00010007827) #26	POGK (ENSBMSG00010007837) #29	TADA1 (ENSBMSG00010007849) #30	ILDR2 (ENSBMSG00010007897) #31	MAEL (ENSBMSG00010008161) #32	GPA33 (ENSBMSG00010008208) #33	ENSBMSG00010008217	STYXL2 (ENSBMSG00010008225) #34	ENSBMSG00010008238	POU2F1 (ENSBMSG00010008277) #35	CD247 (ENSBMSG00010008335) #36	ENSBMSG00010008356
Odontoceti	ANCESTRAL SPECIES		ENSGT00940000157769 #10	ENSGT00940000153464.A.b #11	ENSGT00940000154842.a.b #12	ENSGT00390000013340 #13	ENSGT00390000014067 #14	ENSGT00940000159036 #15	ENSGT00940000157380 #16	ENSGT00390000004199 #17	ENSGT00940000154374.b #18	ENSGT00940000166434	ENSGT00940000163859.a.a	ENSGT00390000003248.a.b.a.b	ENSGT00940000157774 #19	ENSGT00940000161269 #20	ENSGT00940000156906 #21	ENSGT00390000008608 #22	ENSGT00940000162687 #23	ENSGT00390000002659 #24	ENSGT01020000230412.A.c.b.d #25	ENSGT00390000018059.b #26	ENSGT00940000162904 #28	ENSGT00440000039028 #29	ENSGT00390000011644 #30	ENSGT00950000183058.A.a #31	ENSGT00390000003645 #32	ENSGT00940000160248 #33	ENSGT00940000159723 #34	ENSGT00940000157831 #35	ENSGT00390000018208 #36	ENSGT00390000005914.a #37	ENSGT00940000153997.b.a.b.g
Sperm whale	MODERN SPECIES	15	SH2D1B (ENSPCTG00005005171)	ENSPCTG00005005152	UHMK1 (ENSPCTG00005005114) #10	UHMK1 (ENSPCTG00005005000) #11	HSD17B7 (ENSPCTG00005004854) #12	CCDC190 (ENSPCTG00005004831) #14	RGS4 (ENSPCTG00005004790) #15	RGS5 (ENSPCTG00005004758) #16	NUF2 (ENSPCTG00005004722) #17	PBX1 (ENSPCTG00005004638) #18	ENSPCTG00005004612	ENSPCTG00005004602	LMX1A (ENSPCTG00005004564) #19	RXRG (ENSPCTG00005004523) #20	LRRC52 (ENSPCTG00005004505) #21	MGST3 (ENSPCTG00005004485) #22	TMCO1 (ENSPCTG00005004388) #23	ENSPCTG00005004343	FMO3 (ENSPCTG00005004320)	MROH9 (ENSPCTG00005004265)	PRRX1 (ENSPCTG00005004202)	GORAB (ENSPCTG00005004177)	NTMT2 (ENSPCTG00005004153)	KIFAP3 (ENSPCTG00005004091)	SCYL3 (ENSPCTG00005004042)	C4H1orf112 (ENSPCTG00005003999)	METTL18 (ENSPCTG00005003983)	SELE (ENSPCTG00005003943)	SELL (ENSPCTG00005003917)	SELP (ENSPCTG00005003782)	F5 (ENSPCTG00005003722)
Odontoceti_a	ANCESTRAL SPECIES		ENSGT00940000168189	ENSGT00940000157769 #10	ENSGT00940000153464.A.b #11	ENSGT00940000154842.a.b #12	ENSGT00390000013340 #13	ENSGT00390000014067 #14	ENSGT00940000159036 #15	ENSGT00940000157380 #16	ENSGT00390000004199 #17	ENSGT00940000154374.b #18	ENSGT00940000163859.a.a	ENSGT00390000003248.a.b.a.b	ENSGT00940000157774 #19	ENSGT00940000161269 #20	ENSGT00940000156906 #21	ENSGT00390000008608 #22	ENSGT00940000162687 #23	ENSGT00390000002659 #24	ENSGT01020000230412.A.c.b.d #25	ENSGT00390000018059.b #26	ENSGT00940000162904 #28	ENSGT00440000039028 #29	ENSGT00390000011644 #30	ENSGT00950000183058.A.a #31	ENSGT00390000003645 #32	ENSGT00940000160248 #33	ENSGT00940000159723 #34	ENSGT00940000157831 #35	ENSGT00390000018208 #36	ENSGT00390000005914.a #37	ENSGT00940000153997.b.a.b.g
Odontoceti_b	ANCESTRAL SPECIES		ENSGT00940000168189	ENSGT00940000157769 #10	ENSGT00940000153464.A.b #11	ENSGT00940000154842.a.b #12	ENSGT00390000013340 #13	ENSGT00390000014067 #14	ENSGT00940000159036 #15	ENSGT00940000157380 #16	ENSGT00390000004199 #17	ENSGT00940000154374.b #18	ENSGT00940000163859.a.a	ENSGT00390000003248.a.b.a.b	ENSGT00940000157774 #19	ENSGT00940000161269 #20	ENSGT00940000156906 #21	ENSGT00390000008608 #22	ENSGT00940000162687 #23	ENSGT00940000163309	ENSGT00390000002659 #24	ENSGT01020000230412.A.c.b.d #25	ENSGT00390000018059.b #26	ENSGT00940000162904 #28	ENSGT00440000039028 #29	ENSGT00390000011644 #30	ENSGT00950000183058.A.a #31	ENSGT00390000003645 #32	ENSGT00940000160248 #33	ENSGT00940000159723 #34	ENSGT00940000157831 #35	ENSGT00390000018208 #36	ENSGT00390000005914.a #37
Monodontidae	ANCESTRAL SPECIES		ENSGT00940000168189	ENSGT00940000157769 #10	ENSGT00940000153464.A.b #11	ENSGT00940000154842.a.b #12	ENSGT00390000013340 #13	ENSGT00390000014067 #14	ENSGT00940000159036 #15	ENSGT00940000157380 #16	ENSGT00390000004199 #17	ENSGT00940000154374.b #18	ENSGT00940000163859.a.a	ENSGT00390000003248.a.b.a.b	ENSGT00940000157774 #19	ENSGT00940000161269 #20	ENSGT00940000156906 #21	ENSGT00390000008608 #22	ENSGT00940000162687 #23	ENSGT00940000163309	ENSGT00390000002659 #24	ENSGT01020000230412.A.c.b.d #25	ENSGT00390000018059.b #26	ENSGT00940000162904 #28	ENSGT00440000039028 #29	ENSGT00390000011644 #30	ENSGT00950000183058.A.a #31	ENSGT00390000003645 #32	ENSGT00940000160248 #33	ENSGT00940000159723 #34	ENSGT00940000157831 #35	ENSGT00390000018208 #36	ENSGT00390000005914.a #37
Narwhal	MODERN SPECIES	304	ENSMMNG00015005027	ENSMMNG00015005017	UHMK1 (ENSMMNG00015005007) #10	UAP1 (ENSMMNG00015004995) #11	DDR2 (ENSMMNG00015004981) #12	HSD17B7 (ENSMMNG00015004973) #13	CCDC190 (ENSMMNG00015004967) #14	RGS4 (ENSMMNG00015004030) #15	RGS5 (ENSMMNG00015004005) #16	NUF2 (ENSMMNG00015003976) #17	PBX1 (ENSMMNG00015003937) #18	ENSMMNG00015003901	LMX1A (ENSMMNG00015003875) #19	RXRG (ENSMMNG00015003844) #20	LRRC52 (ENSMMNG00015003822) #21	MGST3 (ENSMMNG00015003802) #22	ENSMMNG00015003777 #23	TMCO1 (ENSMMNG00015003759) #24	UCK2 (ENSMMNG00015003736) #25	FAM78B (ENSMMNG00015003727) #26	ENSMMNG00015003712 #28	POGK (ENSMMNG00015003693) #29	TADA1 (ENSMMNG00015003668) #30	ILDR2 (ENSMMNG00015003584) #31	MAEL (ENSMMNG00015003409) #32	GPA33 (ENSMMNG00015003360) #33	STYXL2 (ENSMMNG00015003316) #34	POU2F1 (ENSMMNG00015003259) #35	CD247 (ENSMMNG00015003207) #36	CREG1 (ENSMMNG00015003189) #37	RCSD1 (ENSMMNG00015003164)
Beluga whale	MODERN SPECIES	94	UAP1 (ENSDLEG00000017970) #11	ENSDLEG00000017947	DDR2 (ENSDLEG00000017901) #12	HSD17B7 (ENSDLEG00000017870) #13	ENSDLEG00000017861	CCDC190 (ENSDLEG00000017846) #14	RGS4 (ENSDLEG00000017831) #15	RGS5 (ENSDLEG00000017805) #16	NUF2 (ENSDLEG00000017742) #17	ENSDLEG00000017729 #18	PBX1 (ENSDLEG00000017706) #18	ENSDLEG00000017673	LMX1A (ENSDLEG00000017636) #19	RXRG (ENSDLEG00000017605) #20	LRRC52 (ENSDLEG00000017593) #21	MGST3 (ENSDLEG00000017577) #22	ALDH9A1 (ENSDLEG00000017508)	TMCO1 (ENSDLEG00000017475) #24	ENSDLEG00000017465
Vaquita	MODERN SPECIES		UHMK1 (ENSPSNG00000013287) #10	UAP1 (ENSPSNG00000013390) #11	DDR2 (ENSPSNG00000013548) #12	HSD17B7 (ENSPSNG00000013635) #13	CCDC190 (ENSPSNG00000013717) #14	RGS4 (ENSPSNG00000013819) #15	RGS5 (ENSPSNG00000014041) #16	ENSPSNG00000014109	ENSPSNG00000014131	NUF2 (ENSPSNG00000014212) #17	PBX1 (ENSPSNG00000014373) #18	ENSPSNG00000014637	LMX1A (ENSPSNG00000014698) #19	RXRG (ENSPSNG00000014831) #20	LRRC52 (ENSPSNG00000015078) #21	MGST3 (ENSPSNG00000015120) #22	ENSPSNG00000015151 #23	TMCO1 (ENSPSNG00000015217) #24	UCK2 (ENSPSNG00000015341) #25	FAM78B (ENSPSNG00000015412) #26	POGK (ENSPSNG00000015457) #29	TADA1 (ENSPSNG00000015506) #30	ILDR2 (ENSPSNG00000015672) #31	MAEL (ENSPSNG00000016527) #32	GPA33 (ENSPSNG00000016889) #33	STYXL2 (ENSPSNG00000016972) #34	POU2F1 (ENSPSNG00000017141) #35	CD247 (ENSPSNG00000017428) #36	CREG1 (ENSPSNG00000017560) #37	RCSD1 (ENSPSNG00000017633)	MPZL1 (ENSPSNG00000017712)
Dolphin	MODERN SPECIES	761																ENSTTRG00000000489 #22	ENSTTRG00000000490 #23	TMCO1 (ENSTTRG00000000495) #24
Laurasiatheria_b	ANCESTRAL SPECIES		ENSGT00940000163577	ENSGT00900000143287	ENSGT00940000157769 #10	ENSGT00940000153464.A.b #11	ENSGT00940000154842.a.b #12	ENSGT00390000013340 #13	ENSGT00390000014067 #14	ENSGT00940000159036 #15	ENSGT00940000157380 #16	ENSGT00390000004199 #17	ENSGT00940000163762.a.a	ENSGT00940000154374.b #18	ENSGT00940000157774 #19	ENSGT00940000161269 #20	ENSGT00940000156906 #21	ENSGT00390000008608 #22	ENSGT00940000162687 #23	ENSGT00940000163309	ENSGT00390000002659 #24	ENSGT01020000230412.A.c.b.d #25	ENSGT00390000018059.b #26	ENSGT00940000162904 #28	ENSGT00940000160836.d #27	ENSGT00440000039028 #29	ENSGT00390000011644 #30	ENSGT00950000185149	ENSGT00950000183058.A.a #31	ENSGT00390000003645 #32	ENSGT00940000160248 #33	ENSGT00940000159723 #34	ENSGT00940000157831 #35
Laurasiatheria_c	ANCESTRAL SPECIES		ENSGT00390000007598 #7	ENSGT00940000164616 #9	ENSGT00940000163577	ENSGT00940000157769 #10	ENSGT00940000153464.A.b #11	ENSGT00940000154842.a.b #12	ENSGT00390000013340 #13	ENSGT00390000014067 #14	ENSGT00940000159036 #15	ENSGT00940000157380 #16	ENSGT00390000004199 #17	ENSGT00940000154374.b #18	ENSGT00940000157774 #19	ENSGT00940000161269 #20	ENSGT00940000156906 #21	ENSGT00390000008608 #22	ENSGT00940000162687 #23	ENSGT00390000002659 #24	ENSGT01020000230412.A.c.b.d #25	ENSGT00390000018059.b #26	ENSGT00940000162904 #28	ENSGT00940000160836.d #27	ENSGT00440000039028 #29	ENSGT00390000011644 #30	ENSGT00950000183058.A.a #31	ENSGT00950000185149	ENSGT00390000003645 #32	ENSGT00940000160248 #33	ENSGT00940000159723 #34	ENSGT00940000157831 #35	ENSGT00390000018208 #36
Chiroptera	ANCESTRAL SPECIES	22	ENSGT00390000007598 #7	ENSGT00940000164616 #9	ENSGT00940000163577	ENSGT00940000157769 #10	ENSGT00940000153464.A.b #11	ENSGT00940000154842.a.b #12	ENSGT00390000013340 #13	ENSGT00390000014067 #14	ENSGT00940000159036 #15	ENSGT00940000157380 #16	ENSGT00390000004199 #17	ENSGT00940000154374.b #18	ENSGT00940000157774 #19	ENSGT00940000161269 #20	ENSGT00940000156906 #21	ENSGT00390000008608 #22	ENSGT00940000162687 #23	ENSGT00940000163309	ENSGT00390000002659 #24	ENSGT01020000230412.A.c.b.d #25	ENSGT00390000018059.b #26	ENSGT00940000160836.d #27	ENSGT00440000039028 #29	ENSGT00390000011644 #30	ENSGT00950000183058.A.a #31	ENSGT00390000003645 #32	ENSGT00940000160248 #33	ENSGT00940000159723 #34	ENSGT00940000157831 #35	ENSGT00390000018208 #36	ENSGT00390000005914.a #37
Microchiroptera	ANCESTRAL SPECIES	22	ENSGT00510000046975.b.t ##8	ENSGT00390000007598 #7	ENSGT00940000163577	ENSGT00940000157769 #10	ENSGT00940000153464.A.b #11	ENSGT00940000154842.a.b #12	ENSGT00390000013340 #13	ENSGT00390000014067 #14	ENSGT00940000159036 #15	ENSGT00940000157380 #16	ENSGT00390000004199 #17	ENSGT00940000154374.b #18	ENSGT00940000157774 #19	ENSGT00940000161269 #20	ENSGT00940000156906 #21	ENSGT00390000008608 #22	ENSGT00940000162687 #23	ENSGT00390000002659 #24	ENSGT01020000230412.A.c.b.d #25	ENSGT00390000018059.b #26	ENSGT00940000160836.d #27	ENSGT00440000039028 #29	ENSGT00390000011644 #30	ENSGT00950000183058.A.a #31	ENSGT00390000003645 #32	ENSGT00940000160248 #33	ENSGT00940000159723 #34	ENSGT00940000157831 #35	ENSGT00390000018208 #36	ENSGT00390000005914.a #37	ENSGT00940000153997.b.a.b
Greater horseshoe bat	DUPLICATION
Greater horseshoe bat	DUPLICATION
Greater horseshoe bat	MODERN SPECIES	14	ENSRFEG00010015498 ##8	SPATA46 (ENSRFEG00010015656) #7	SH2D1B (ENSRFEG00010015711)	UHMK1 (ENSRFEG00010015801) #10	UAP1 (ENSRFEG00010015890) #11	DDR2 (ENSRFEG00010016034) #12	HSD17B7 (ENSRFEG00010016070) #13	ENSRFEG00010016138 #14	RGS4 (ENSRFEG00010016213) #15	RGS5 (ENSRFEG00010016319) #16	NUF2 (ENSRFEG00010016436) #17	PBX1 (ENSRFEG00010016558) #18	LMX1A (ENSRFEG00010016928) #19	RXRG (ENSRFEG00010016975) #20	LRRC52 (ENSRFEG00010017050) #21	ENSRFEG00010017103 #22	ENSRFEG00010017132 #23	TMCO1 (ENSRFEG00010017188) #24	UCK2 (ENSRFEG00010017265) #25	FAM78B (ENSRFEG00010017400) #26	ENSRFEG00010017446 #27	POGK (ENSRFEG00010017877) #29	TADA1 (ENSRFEG00010017911) #30	ENSRFEG00010017971 #31	MAEL (ENSRFEG00010018036) #32	GPA33 (ENSRFEG00010018361) #33	STYXL2 (ENSRFEG00010018371) #34	ENSRFEG00010018402 #35	ENSRFEG00010018449 #35	CD247 (ENSRFEG00010018481) #36	CREG1 (ENSRFEG00010018544) #37
Greater horseshoe bat	MODERN SPECIES		ENSRFEG00010004780	ENSRFEG00010004747	NAP1L3 (ENSRFEG00010004744)	ENSRFEG00010004739	ENSRFEG00010004728	ENSRFEG00010004722	ENSRFEG00010004710	ENSRFEG00010004703	ENSRFEG00010004697	ENSRFEG00010004688	ENSRFEG00010004680	DIAPH2 (ENSRFEG00010004623)	ENSRFEG00010004581	ENSRFEG00010004567	ENSRFEG00010004557	ENSRFEG00010004553 #22	ENSRFEG00010004537	PCDH19 (ENSRFEG00010004514)	TNMD (ENSRFEG00010004486)	TSPAN6 (ENSRFEG00010004465)	SRPX2 (ENSRFEG00010001854)	SYTL4 (ENSRFEG00010001817)	CSTF2 (ENSRFEG00010001749)	NOX1 (ENSRFEG00010001646)	XKRX (ENSRFEG00010001578)	ARL13A (ENSRFEG00010001559)	ENSRFEG00010001544	TMEM35A (ENSRFEG00010001537)	CENPI (ENSRFEG00010001521)	DRP2 (ENSRFEG00010001435)	TAF7L (ENSRFEG00010001319)
Greater horseshoe bat	MODERN SPECIES	4	DQX1 (ENSRFEG00010006764)	AUP1 (ENSRFEG00010006693)	HTRA2 (ENSRFEG00010006592)	LOXL3 (ENSRFEG00010006428)	DOK1 (ENSRFEG00010006313)	M1AP (ENSRFEG00010006231)	SEMA4F (ENSRFEG00010005977)	ENSRFEG00010005892	HK2 (ENSRFEG00010005850)	ENSRFEG00010005804	TACR1 (ENSRFEG00010005771)	EVA1A (ENSRFEG00010005742)	ENSRFEG00010005726	MRPL19 (ENSRFEG00010005699)	GCFC2 (ENSRFEG00010005629)	ENSRFEG00010005599 #22	LRRTM4 (ENSRFEG00010005568)	ENSRFEG00010005543	ENSRFEG00010014244	ENSRFEG00010014177	LRRTM1 (ENSRFEG00010013989)	CTNNA2 (ENSRFEG00010013591)	ENSRFEG00010013508	SUCLG1 (ENSRFEG00010013453)	DNAH6 (ENSRFEG00010012455)	TMSB10 (ENSRFEG00010012256)	KCMF1 (ENSRFEG00010012206)	ENSRFEG00010012190	TCF7L1 (ENSRFEG00010012140)	ENSRFEG00010012085	RETSAT (ENSRFEG00010012053)
Microbat	MODERN SPECIES	1521															LRRC52 (ENSMLUG00000009573) #21	MGST3 (ENSMLUG00000001179) #22	ENSMLUG00000001187 #23	TMCO1 (ENSMLUG00000003842) #24	UCK2 (ENSMLUG00000016012) #25	FAM78B (ENSMLUG00000004494) #26	ENSMLUG00000022494
Megabat	MODERN SPECIES	1040																MGST3 (ENSPVAG00000007688) #22	ALDH9A1 (ENSPVAG00000007690)	TMCO1 (ENSPVAG00000007692) #24	UCK2 (ENSPVAG00000007694) #25
Equus	ANCESTRAL SPECIES	75	ENSGT00390000007598 #7	ENSGT00510000046975.b.t ##8	ENSGT00940000157769 #10	ENSGT00940000153464.A.b #11	ENSGT00940000154842.a.b #12	ENSGT00390000013340 #13	ENSGT00940000161784.f.b.a	ENSGT00390000014067 #14	ENSGT00940000159036 #15	ENSGT00940000157380 #16	ENSGT00390000004199 #17	ENSGT00940000154374.b #18	ENSGT00940000157774 #19	ENSGT00940000161269 #20	ENSGT00940000156906 #21	ENSGT00390000008608 #22	ENSGT00940000162687 #23	ENSGT00390000002659 #24	ENSGT01020000230412.A.c.b.d #25	ENSGT00390000018059.b #26	ENSGT00940000162904 #28	ENSGT00940000154757.db
Horse	MODERN SPECIES	26	UAP1 (ENSECAG00000054520) #11	DDR2 (ENSECAG00000010726) #12	HSD17B7 (ENSECAG00000024992) #13	ENSECAG00000019733	ENSECAG00000036612	ENSECAG00000050571	ENSECAG00000048731	CCDC190 (ENSECAG00000024873) #14	RGS4 (ENSECAG00000018261) #15	RGS5 (ENSECAG00000023668) #16	NUF2 (ENSECAG00000009163) #17	PBX1 (ENSECAG00000013058) #18	LMX1A (ENSECAG00000009132) #19	RXRG (ENSECAG00000024377) #20	LRRC52 (ENSECAG00000023465) #21	MGST3 (ENSECAG00000022320) #22	ALDH9A1 (ENSECAG00000012770) #23	TMCO1 (ENSECAG00000054508) #24	UCK2 (ENSECAG00000016577) #25	FAM78B (ENSECAG00000004085) #26	ENSECAG00000013370 #28	ENSECAG00000000661	ENSECAG00000022247	ENSECAG00000016667	ENSECAG00000012425	ENSECAG00000012244	ENSECAG00000059307	ENSECAG00000045520	ENSECAG00000014292	ENSECAG00000042600	ENSECAG00000031055
Donkey	MODERN SPECIES	17	DDR2 (ENSEASG00005022832) #12	ENSEASG00005030766 #13	ENSEASG00005038581	ENSEASG00005031513	ENSEASG00005027136	CCDC190 (ENSEASG00005010387) #14	RGS4 (ENSEASG00005031920) #15	RGS5 (ENSEASG00005024804) #16	NUF2 (ENSEASG00005010407) #17	ENSEASG00005010465 #18	ENSEASG00005010469 #18	LMX1A (ENSEASG00005010473) #19	RXRG (ENSEASG00005010475) #20	LRRC52 (ENSEASG00005010476) #21	ENSEASG00005031954	MGST3 (ENSEASG00005010477) #22	ENSEASG00005010480 #23	TMCO1 (ENSEASG00005010481) #24	ENSEASG00005010482 #25	ENSEASG00005027809	ENSEASG00005007348	FMO5 (ENSEASG00005007357)	ENSEASG00005030068	ENSEASG00005007364	ENSEASG00005007370	ENSEASG00005007372	BCL9 (ENSEASG00005007373)	ACP6 (ENSEASG00005007375)	GJA5 (ENSEASG00005034147)	GJA8 (ENSEASG00005007377)	ENSEASG00005007378
Carnivora	ANCESTRAL SPECIES	14	ENSGT00940000163577	ENSGT00900000143287	ENSGT00940000157769 #10	ENSGT00940000153464.A.b #11	ENSGT00940000154842.a.b #12	ENSGT00390000013340 #13	ENSGT00390000014067 #14	ENSGT00940000159036 #15	ENSGT00940000157380 #16	ENSGT00390000004199 #17	ENSGT00940000163762.a.a	ENSGT00940000154374.b #18	ENSGT00940000157774 #19	ENSGT00940000161269 #20	ENSGT00940000156906 #21	ENSGT00390000008608 #22	ENSGT00940000162687 #23	ENSGT00940000163309	ENSGT00390000002659 #24	ENSGT01020000230412.A.c.b.d #25	ENSGT00390000018059.b #26	ENSGT00940000162904 #28	ENSGT00390000016736.b	ENSGT00390000006681	ENSGT00390000016465	ENSGT00950000182767.a.a	ENSGT00390000011405	ENSGT00940000161139	ENSGT00940000157671	ENSGT00950000183093.C	ENSGT00940000162410
Caniformia	ANCESTRAL SPECIES	10	ENSGT00940000163577	ENSGT00900000143287	ENSGT00940000157769 #10	ENSGT00940000153464.A.b #11	ENSGT00940000154842.a.b #12	ENSGT00390000013340 #13	ENSGT00390000014067 #14	ENSGT00940000159036 #15	ENSGT00940000157380 #16	ENSGT00390000004199 #17	ENSGT00940000163762.a.a	ENSGT00940000154374.b #18	ENSGT00940000157774 #19	ENSGT00940000161269 #20	ENSGT00940000156906 #21	ENSGT00390000008608 #22	ENSGT00940000162687 #23	ENSGT00940000163309	ENSGT00390000002659 #24	ENSGT01020000230412.A.c.b.d #25	ENSGT00390000018059.b #26	ENSGT00940000162904 #28	ENSGT00390000016736.b	ENSGT00390000006681	ENSGT00390000016465	ENSGT00950000182767.a.a	ENSGT00390000011405	ENSGT00940000161139	ENSGT00940000157671	ENSGT00950000183093.C	ENSGT00940000162410
Canidae	ANCESTRAL SPECIES	36	ENSGT00510000046975.b.t ##8	ENSGT00940000163577	ENSGT00900000143287	ENSGT00940000157769 #10	ENSGT00940000153464.A.b #11	ENSGT00940000154842.a.b #12	ENSGT00390000013340 #13	ENSGT00390000014067 #14	ENSGT00940000159036 #15	ENSGT00940000157380 #16	ENSGT00390000004199 #17	ENSGT00940000154374.b #18	ENSGT00940000157774 #19	ENSGT00940000161269 #20	ENSGT00940000156906 #21	ENSGT00390000008608 #22	ENSGT00940000162687 #23	ENSGT00390000002659 #24	ENSGT01020000230412.A.c.b.d #25	ENSGT00390000018059.b #26	ENSGT00940000162904 #28	ENSGT00390000016736.b	ENSGT00390000006681	ENSGT00390000016465	ENSGT00950000182767.a.a	ENSGT00390000011405	ENSGT00940000161139	ENSGT00940000157671	ENSGT00950000183093.C	ENSGT00940000162410	ENSGT00940000159665.e
Canis_lupus	ANCESTRAL SPECIES	33	ENSGT00510000046975.b.t ##8	ENSGT00940000163577	ENSGT00900000143287	ENSGT00940000157769 #10	ENSGT00940000153464.A.b #11	ENSGT00940000154842.a.b #12	ENSGT00390000013340 #13	ENSGT00390000014067 #14	ENSGT00940000159036 #15	ENSGT00940000157380 #16	ENSGT00390000004199 #17	ENSGT00940000154374.b #18	ENSGT00940000157774 #19	ENSGT00940000161269 #20	ENSGT00940000156906 #21	ENSGT00390000008608 #22	ENSGT00940000162687 #23	ENSGT00390000002659.m #24	ENSGT01020000230412.A.c.b.d #25	ENSGT00390000018059.b #26	ENSGT00940000162904 #28	ENSGT00390000016736.b	ENSGT00390000006681	ENSGT00390000016465	ENSGT00950000182767.a.a	ENSGT00390000011405	ENSGT00940000161139	ENSGT00940000157671	ENSGT00950000183093.C	ENSGT00940000162410	ENSGT00940000159665.e
Dingo	DUPLICATION
Dingo	MODERN SPECIES	275	SH2D1B (ENSCAFG00020001642)	UHMK1 (ENSCAFG00020001672) #10	UAP1 (ENSCAFG00020001687) #11	DDR2 (ENSCAFG00020001692) #12	HSD17B7 (ENSCAFG00020001727) #13	ENSCAFG00020001732 #14	RGS4 (ENSCAFG00020001738) #15	RGS5 (ENSCAFG00020001746) #16	NUF2 (ENSCAFG00020001764) #17	ENSCAFG00020001925 #18	ENSCAFG00020001928	ENSCAFG00020001933 #18	LMX1A (ENSCAFG00020001942) #19	RXRG (ENSCAFG00020001975) #20	LRRC52 (ENSCAFG00020001986) #21	ENSCAFG00020001992 #22	ENSCAFG00020002030 #23	ENSCAFG00020002036 #24	UCK2 (ENSCAFG00020002038) #25	FAM78B (ENSCAFG00020002057) #26	ENSCAFG00020002074 #28	BROX (ENSCAFG00020002180)	AIDA (ENSCAFG00020002192)	MIA3 (ENSCAFG00020002228)	TAF1A (ENSCAFG00020002470)	HHIPL2 (ENSCAFG00020002478)	DUSP10 (ENSCAFG00020002486)	HLX (ENSCAFG00020002499)	MTARC1 (ENSCAFG00020002510)	ENSCAFG00020002555	MARK1 (ENSCAFG00020002602)
Dingo	MODERN SPECIES	88	MAL2 (ENSCAFG00020004351)	COLEC10 (ENSCAFG00020004344)	ENSCAFG00020004342	TNFRSF11B (ENSCAFG00020004337)	SAMD12 (ENSCAFG00020004321)	ENSCAFG00020004283	EXT1 (ENSCAFG00020004235)	MED30 (ENSCAFG00020004225)	SLC30A8 (ENSCAFG00020004204)	RAD21 (ENSCAFG00020004189)	UTP23 (ENSCAFG00020004174)	EIF3H (ENSCAFG00020004169)	ENSCAFG00020004144	TRPS1 (ENSCAFG00020004107)	ENSCAFG00020004080	ENSCAFG00020004048 #22	ENSCAFG00020004032	CSMD3 (ENSCAFG00020003854)	ENSCAFG00020003786	ENSCAFG00020003768	KCNV1 (ENSCAFG00020003748)	ENSCAFG00020003744	SYBU (ENSCAFG00020003730)	EBAG9 (ENSCAFG00020003724)	PKHD1L1 (ENSCAFG00020003456)	ENY2 (ENSCAFG00020003420)	NUDCD1 (ENSCAFG00020003417)	TRHR (ENSCAFG00020003402)	TMEM74 (ENSCAFG00020003393)	ENSCAFG00020003374	ENSCAFG00020003360
Dog	MODERN SPECIES	31	ENSCAFG00845027342 ##8	SH2D1B (ENSCAFG00845027206)	ENSCAFG00845027160	UHMK1 (ENSCAFG00845027027) #10	UAP1 (ENSCAFG00845026767) #11	DDR2 (ENSCAFG00845026475) #12	HSD17B7 (ENSCAFG00845026233) #13	CCDC190 (ENSCAFG00845026143) #14	RGS4 (ENSCAFG00845026010) #15	RGS5 (ENSCAFG00845025929) #16	NUF2 (ENSCAFG00845025722) #17	PBX1 (ENSCAFG00845025355) #18	LMX1A (ENSCAFG00845025098) #19	RXRG (ENSCAFG00845024833) #20	LRRC52 (ENSCAFG00845024741) #21	MGST3 (ENSCAFG00845024662) #22	ENSCAFG00845024594 #23	ENSCAFG00845024557	TMCO1 (ENSCAFG00845024491) #24	UCK2 (ENSCAFG00845024343) #25	FAM78B (ENSCAFG00845024241) #26	ENSCAFG00845030595 #28	ENSCAFG00845030578	BROX (ENSCAFG00845030521)	AIDA (ENSCAFG00845030498)	MIA3 (ENSCAFG00845030361)	TAF1A (ENSCAFG00845030298)	HHIPL2 (ENSCAFG00845030272)	DUSP10 (ENSCAFG00845030259)	ENSCAFG00845030246	HLX (ENSCAFG00845030227)
Red fox	MODERN SPECIES	8	ENSVVUG00000009957 ##8	SPATA46 (ENSVVUG00000009973) #7	ENSVVUG00000009977	UHMK1 (ENSVVUG00000009990) #10	UAP1 (ENSVVUG00000010001) #11	DDR2 (ENSVVUG00000010010) #12	HSD17B7 (ENSVVUG00000010017) #13	CCDC190 (ENSVVUG00000010024) #14	RGS4 (ENSVVUG00000010037) #15	RGS5 (ENSVVUG00000010040) #16	NUF2 (ENSVVUG00000010059) #17	PBX1 (ENSVVUG00000010091) #18	LMX1A (ENSVVUG00000010113) #19	RXRG (ENSVVUG00000010121) #20	LRRC52 (ENSVVUG00000010146) #21	MGST3 (ENSVVUG00000010150) #22	ENSVVUG00000010155 #23	ENSVVUG00000010169	UCK2 (ENSVVUG00000010176) #25	FAM78B (ENSVVUG00000010186) #26	ENSVVUG00000010193 #28	FAM177B (ENSVVUG00000010199)	BROX (ENSVVUG00000010206)	AIDA (ENSVVUG00000010215)	MIA3 (ENSVVUG00000010238)	TAF1A (ENSVVUG00000010281)	HHIPL2 (ENSVVUG00000010307)	ENSVVUG00000010329	ENSVVUG00000010341	DUSP10 (ENSVVUG00000010349)	HLX (ENSVVUG00000010359)
Caniformia_b	ANCESTRAL SPECIES	8	ENSGT00510000046975.b.t ##8	ENSGT00940000163577	ENSGT00940000157769 #10	ENSGT00940000153464.A.b #11	ENSGT00940000154842.a.b #12	ENSGT00390000013340 #13	ENSGT00390000014067 #14	ENSGT00940000159036 #15	ENSGT00940000157380 #16	ENSGT00390000004199 #17	ENSGT00940000163762.a.a	ENSGT00940000154374.b #18	ENSGT00940000157774 #19	ENSGT00940000161269 #20	ENSGT00940000156906 #21	ENSGT00390000008608 #22	ENSGT00940000162687 #23	ENSGT00940000163309	ENSGT00390000002659 #24	ENSGT01020000230412.A.c.b.d #25	ENSGT00390000018059.b #26	ENSGT00940000162904 #28	ENSGT00390000016736.b	ENSGT00390000006681	ENSGT00390000016465	ENSGT00950000182767.a.a	ENSGT00390000011405	ENSGT00940000161139	ENSGT00940000157671	ENSGT00950000183093.C	ENSGT00940000162410
Mustelinae	ANCESTRAL SPECIES	89	ENSGT00390000007598 #7	ENSGT00510000046975.b.t ##8	ENSGT00940000163577	ENSGT00940000157769 #10	ENSGT00940000153464.A.b #11	ENSGT00940000154842.a.b #12	ENSGT00390000013340 #13	ENSGT00390000014067 #14	ENSGT00940000159036 #15	ENSGT00940000157380 #16	ENSGT00390000004199 #17	ENSGT00940000154374.b #18	ENSGT00940000157774 #19	ENSGT00940000161269 #20	ENSGT00940000156906 #21	ENSGT00390000008608 #22	ENSGT00940000162687 #23	ENSGT00940000163309	ENSGT00390000002659 #24	ENSGT01020000230412.A.c.b.d #25	ENSGT00390000018059.b #26	ENSGT00940000162904 #28	ENSGT00390000016736.b	ENSGT00390000006681	ENSGT00390000016465	ENSGT00950000182767.a.a	ENSGT00390000011405	ENSGT00940000161139	ENSGT00940000157671	ENSGT00950000183093.C	ENSGT00940000162410
Ferret	MODERN SPECIES	191	NOS1AP (ENSMPUG00000003532) #8	SPATA46 (ENSMPUG00000003588) #7	ENSMPUG00000003605	UHMK1 (ENSMPUG00000003619) #10	UAP1 (ENSMPUG00000003675) #11	DDR2 (ENSMPUG00000003733) #12	HSD17B7 (ENSMPUG00000003741) #13	CCDC190 (ENSMPUG00000003748) #14	RGS4 (ENSMPUG00000003752) #15	RGS5 (ENSMPUG00000003758) #16	NUF2 (ENSMPUG00000003765) #17	PBX1 (ENSMPUG00000003773) #18	LMX1A (ENSMPUG00000003787) #19	RXRG (ENSMPUG00000003794) #20	LRRC52 (ENSMPUG00000003807) #21	MGST3 (ENSMPUG00000003817) #22	ALDH9A1 (ENSMPUG00000003853)	TMCO1 (ENSMPUG00000003860) #24	UCK2 (ENSMPUG00000003871) #25	FAM78B (ENSMPUG00000003879) #26	ENSMPUG00000003889 #28	FAM177B (ENSMPUG00000003898)	BROX (ENSMPUG00000003905)	AIDA (ENSMPUG00000003914)	MIA3 (ENSMPUG00000003920)	TAF1A (ENSMPUG00000003936)	HHIPL2 (ENSMPUG00000003943)	DUSP10 (ENSMPUG00000003948)	HLX (ENSMPUG00000003954)	MTARC1 (ENSMPUG00000003971)	MTARC2 (ENSMPUG00000004008)
American mink	MODERN SPECIES	63					DDR2 (ENSNVIG00000016758) #12	HSD17B7 (ENSNVIG00000016780) #13	CCDC190 (ENSNVIG00000016807) #14	RGS4 (ENSNVIG00000016836) #15	RGS5 (ENSNVIG00000016874) #16	NUF2 (ENSNVIG00000016917) #17	PBX1 (ENSNVIG00000016954) #18	LMX1A (ENSNVIG00000017024) #19	ENSNVIG00000017049 #20	ENSNVIG00000017070 #20	LRRC52 (ENSNVIG00000017083) #21	MGST3 (ENSNVIG00000017097) #22	ENSNVIG00000017114 #23	TMCO1 (ENSNVIG00000017134) #24	UCK2 (ENSNVIG00000017146) #25	FA78B (ENSNVIG00000017159) #26	ENSNVIG00000017181 #28	FAM177B (ENSNVIG00000017360)	BROX (ENSNVIG00000017378)	AIDA (ENSNVIG00000017466)	MIA3 (ENSNVIG00000017505)	TAF1A (ENSNVIG00000017542)	HHIPL2 (ENSNVIG00000017585)	DUS10 (ENSNVIG00000017616)	HLX (ENSNVIG00000017659)	MTARC1 (ENSNVIG00000017680)	MTARC2 (ENSNVIG00000017700)
Ursidae	ANCESTRAL SPECIES	4	ENSGT00390000007598 #7	ENSGT00510000046975.b.t ##8	ENSGT00940000157769 #10	ENSGT00940000153464.A.b #11	ENSGT00940000154842.a.b #12	ENSGT00390000013340 #13	ENSGT00390000014067 #14	ENSGT00940000159036 #15	ENSGT00940000157380 #16	ENSGT00390000004199 #17	ENSGT00940000163762.a.a	ENSGT00940000154374.b #18	ENSGT00940000157774 #19	ENSGT00940000161269 #20	ENSGT00940000156906 #21	ENSGT00390000008608 #22	ENSGT00940000162687 #23	ENSGT00940000163309	ENSGT00390000002659 #24	ENSGT01020000230412.A.c.b.d #25	ENSGT00390000018059.b #26	ENSGT00940000162904 #28	ENSGT00390000016736.b	ENSGT00390000006681	ENSGT00390000016465	ENSGT00950000182767.a.a	ENSGT00390000011405	ENSGT00940000161139	ENSGT00940000157671	ENSGT00950000183093.C	ENSGT00940000162410
Ursus	ANCESTRAL SPECIES	92	ENSGT00390000007598 #7	ENSGT00510000046975.b.t ##8	ENSGT00940000157769 #10	ENSGT00940000153464.A.b #11	ENSGT00940000154842.a.b #12	ENSGT00390000013340 #13	ENSGT00390000014067 #14	ENSGT00940000159036 #15	ENSGT00940000157380 #16	ENSGT00390000004199 #17	ENSGT00940000163762.a.a	ENSGT00940000154374.b #18	ENSGT00940000157774 #19	ENSGT00940000161269 #20	ENSGT00940000156906 #21	ENSGT00390000008608 #22	ENSGT00940000162687 #23	ENSGT00390000002659 #24	ENSGT01020000230412.A.c.b.d #25	ENSGT00390000018059.b #26	ENSGT00940000162904 #28	ENSGT00390000016736.b	ENSGT00390000006681	ENSGT00390000016465	ENSGT00950000182767.a.a	ENSGT00390000011405	ENSGT00940000161139	ENSGT00940000157671	ENSGT00950000183093.C	ENSGT00940000162410	ENSGT00940000159665
Polar bear	MODERN SPECIES	126	C1orf226 (ENSUMAG00000022778) ##8	ENSUMAG00000022777	UHMK1 (ENSUMAG00000022774) #10	UAP1 (ENSUMAG00000022772) #11	DDR2 (ENSUMAG00000022767) #12	HSD17B7 (ENSUMAG00000022765) #13	CCDC190 (ENSUMAG00000022761) #14	RGS4 (ENSUMAG00000022755) #15	RGS5 (ENSUMAG00000022753) #16	NUF2 (ENSUMAG00000022747) #17	ENSUMAG00000022741	PBX1 (ENSUMAG00000022725) #18	LMX1A (ENSUMAG00000022720) #19	RXRG (ENSUMAG00000022718) #20	LRRC52 (ENSUMAG00000022717) #21	MGST3 (ENSUMAG00000022716) #22	ENSUMAG00000022715 #23	ENSUMAG00000022713	TMCO1 (ENSUMAG00000022711) #24	UCK2 (ENSUMAG00000022705) #25	FAM78B (ENSUMAG00000022702) #26	ENSUMAG00000022700 #28	BROX (ENSUMAG00000022696)	AIDA (ENSUMAG00000022694)	MIA3 (ENSUMAG00000022671)	TAF1A (ENSUMAG00000022644)	HHIPL2 (ENSUMAG00000022636)	DUSP10 (ENSUMAG00000022627)	ENSUMAG00000022625	MTARC1 (ENSUMAG00000022560)	MTARC2 (ENSUMAG00000022546)
American black bear	MODERN SPECIES	554															LRRC52 (ENSUAMG00000013618) #21	MGST3 (ENSUAMG00000013615) #22	ENSUAMG00000013612 #23	TMCO1 (ENSUAMG00000013608) #24	UCK2 (ENSUAMG00000013606) #25
Giant Panda	MODERN SPECIES	18	SPATA46 (ENSAMEG00000001601) #7	C1orf226 (ENSAMEG00000026164) ##8	ENSAMEG00000001590	UHMK1 (ENSAMEG00000001572) #10	UAP1 (ENSAMEG00000001534) #11	DDR2 (ENSAMEG00000001491) #12	HSD17B7 (ENSAMEG00000001450) #13	ENSAMEG00000001441 #14	RGS4 (ENSAMEG00000026331) #15	RGS5 (ENSAMEG00000024725) #16	NUF2 (ENSAMEG00000006525) #17	PBX1 (ENSAMEG00000006543) #18	LMX1A (ENSAMEG00000006574) #19	RXRG (ENSAMEG00000006616) #20	LRRC52 (ENSAMEG00000006655) #21	MGST3 (ENSAMEG00000006658) #22	ALDH9A1 (ENSAMEG00000006688)	TMCO1 (ENSAMEG00000006712) #24	ENSAMEG00000030407	ENSAMEG00000028227	UCK2 (ENSAMEG00000006737) #25	ENSAMEG00000006753 #26	ENSAMEG00000006755 #28	ENSAMEG00000006807	BROX (ENSAMEG00000006808)	AIDA (ENSAMEG00000006848)	MIA3 (ENSAMEG00000006877)	TAF1A (ENSAMEG00000006886)	HHIPL2 (ENSAMEG00000006909)	DUSP10 (ENSAMEG00000006928)	HLX (ENSAMEG00000028397)
Felidae	ANCESTRAL SPECIES	11	ENSGT00510000046975.b.t ##8	ENSGT00940000164616 #9	ENSGT00940000163577	ENSGT00940000157769 #10	ENSGT00940000153464.A.b #11	ENSGT00940000154842.a.b #12	ENSGT00390000013340 #13	ENSGT00390000014067 #14	ENSGT00940000159036 #15	ENSGT00940000157380 #16	ENSGT00390000004199 #17	ENSGT00940000154374.b #18	ENSGT00940000157774 #19	ENSGT00940000161269 #20	ENSGT00940000156906 #21	ENSGT00390000008608 #22	ENSGT00940000163309	ENSGT00390000002659 #24	ENSGT01020000230412.A.c.b.d #25	ENSGT00390000018059.b #26	ENSGT00940000162904 #28	ENSGT00390000016736.b	ENSGT00390000006681	ENSGT00390000016465	ENSGT00950000182767.a.a	ENSGT00390000011405	ENSGT00940000161139	ENSGT00940000157671	ENSGT00390000017384.hb	ENSGT00950000183093.C	ENSGT00940000162410
Panthera	ANCESTRAL SPECIES	32	ENSGT00510000046975.b.t ##8	ENSGT00940000164616 #9	ENSGT00940000163577	ENSGT00940000157769 #10	ENSGT00940000153464.A.b #11	ENSGT00940000154842.a.b #12	ENSGT00390000013340 #13	ENSGT00390000014067 #14	ENSGT00940000159036 #15	ENSGT00940000157380 #16	ENSGT00390000004199 #17	ENSGT00940000154374.b #18	ENSGT00940000157774 #19	ENSGT00940000161269 #20	ENSGT00940000156906 #21	ENSGT00390000008608 #22	ENSGT00940000163309	ENSGT00390000002659 #24	ENSGT01020000230412.A.c.b.d #25	ENSGT00390000018059.b #26	ENSGT00940000162904 #28	ENSGT00390000016736.b	ENSGT00390000006681	ENSGT00390000016465	ENSGT00950000182767.a.a	ENSGT00390000011405	ENSGT00940000161139	ENSGT00940000157671	ENSGT00390000017384.hb	ENSGT00950000183093.C	ENSGT00940000162410
Tiger	MODERN SPECIES	110													LMX1A (ENSPTIG00000020050) #19	RXRG (ENSPTIG00000020075) #20	LRRC52 (ENSPTIG00000020112) #21	MGST3 (ENSPTIG00000020143) #22	ALDH9A1 (ENSPTIG00000020185)	TMCO1 (ENSPTIG00000020270) #24	UCK2 (ENSPTIG00000020276) #25	FAM78B (ENSPTIG00000020286) #26	ENSPTIG00000020297 #28	FAM177B (ENSPTIG00000020311)	BROX (ENSPTIG00000020334)	AIDA (ENSPTIG00000020408)	ENSPTIG00000020426	ENSPTIG00000020433	TAF1A (ENSPTIG00000020439)	HHIPL2 (ENSPTIG00000020447)	DUSP10 (ENSPTIG00000020455)	MTARC1 (ENSPTIG00000020467)	MTARC2 (ENSPTIG00000020481)
Panthera_a	ANCESTRAL SPECIES	47	ENSGT00510000046975.b.t ##8	ENSGT00940000164616 #9	ENSGT00940000163577	ENSGT00940000157769 #10	ENSGT00940000153464.A.b #11	ENSGT00940000154842.a.b #12	ENSGT00390000013340 #13	ENSGT00390000014067 #14	ENSGT00940000159036 #15	ENSGT00940000157380 #16	ENSGT00390000004199 #17	ENSGT00940000154374.b #18	ENSGT00940000157774 #19	ENSGT00940000161269 #20	ENSGT00940000156906 #21	ENSGT00390000008608 #22	ENSGT00940000163309	ENSGT00390000002659 #24	ENSGT01020000230412.A.c.b.d #25	ENSGT00390000018059.b #26	ENSGT00940000162904 #28	ENSGT00390000016736.b	ENSGT00390000006681	ENSGT00390000016465	ENSGT00950000182767.a.a	ENSGT00390000011405	ENSGT00940000161139	ENSGT00940000157671	ENSGT00390000017384.hb	ENSGT00950000183093.C	ENSGT00940000162410
leopard	MODERN SPECIES	47	ENSPPRG00000002500 #9	SH2D1B (ENSPPRG00000002606)	UHMK1 (ENSPPRG00000002673) #10	UAP1 (ENSPPRG00000003872) #11	DDR2 (ENSPPRG00000004150) #12	HSD17B7 (ENSPPRG00000004521) #13	ENSPPRG00000005591 #14	RGS4 (ENSPPRG00000006395) #15	RGS5 (ENSPPRG00000006588) #16	NUF2 (ENSPPRG00000006964) #17	ENSPPRG00000007028 #18	ENSPPRG00000007509 #18	LMX1A (ENSPPRG00000007877) #19	RXRG (ENSPPRG00000007988) #20	LRRC52 (ENSPPRG00000007995) #21	MGST3 (ENSPPRG00000008055) #22	ENSPPRG00000008229	ENSPPRG00000009622	TMCO1 (ENSPPRG00000009653) #24	UCK2 (ENSPPRG00000009804) #25	FAM78B (ENSPPRG00000009919) #26	ENSPPRG00000010126 #28	FAM177B (ENSPPRG00000010153)	BROX (ENSPPRG00000010690)	AIDA (ENSPPRG00000010765)	ENSPPRG00000010841	ENSPPRG00000011042	TAF1A (ENSPPRG00000011163)	HHIPL2 (ENSPPRG00000011175)	DUSP10 (ENSPPRG00000011196)	ENSPPRG00000011205
lion	MODERN SPECIES	17	SPATA46 (ENSPLOG00000016240) #7	C1orf226 (ENSPLOG00000016270) ##8	ENSPLOG00000016340	UHMK1 (ENSPLOG00000016372) #10	UAP1 (ENSPLOG00000016423) #11	DDR2 (ENSPLOG00000016515) #12	HSD17B7 (ENSPLOG00000016646) #13	CCDC190 (ENSPLOG00000016762) #14	RGS4 (ENSPLOG00000016993) #15	RGS5 (ENSPLOG00000017161) #16	NUF2 (ENSPLOG00000017266) #17	PBX1 (ENSPLOG00000017397) #18	LMX1A (ENSPLOG00000017709) #19	RXRG (ENSPLOG00000017780) #20	LRRC52 (ENSPLOG00000017902) #21	MGST3 (ENSPLOG00000017934) #22	ALDH9A1 (ENSPLOG00000017965)	TMCO1 (ENSPLOG00000017999) #24	UCK2 (ENSPLOG00000018029) #25	FAM78B (ENSPLOG00000018075) #26	ENSPLOG00000018165 #28	FAM177B (ENSPLOG00000018635)	BROX (ENSPLOG00000018705)	AIDA (ENSPLOG00000018824)	MIA3 (ENSPLOG00000018998)	TAF1A (ENSPLOG00000019195)	HHIPL2 (ENSPLOG00000019224)	DUSP10 (ENSPLOG00000019298)	ENSPLOG00000019338	ENSPLOG00000019364	HLX (ENSPLOG00000019394)
Cat	MODERN SPECIES	248	UHMK1 (ENSFCAG00000014123) #10	UAP1 (ENSFCAG00000014124) #11	DDR2 (ENSFCAG00000009163) #12	ENSFCAG00000049643	HSD17B7 (ENSFCAG00000025287) #13	CCDC190 (ENSFCAG00000009378) #14	RGS4 (ENSFCAG00000031433) #15	RGS5 (ENSFCAG00000045953) #16	NUF2 (ENSFCAG00000005528) #17	PBX1 (ENSFCAG00000005533) #18	LMX1A (ENSFCAG00000010758) #19	RXRG (ENSFCAG00000010759) #20	LRRC52 (ENSFCAG00000040033) #21	ALDH9A1 (ENSFCAG00000004312)	TMCO1 (ENSFCAG00000029341) #24	MGST3 (ENSFCAG00000004311) #22	UCK2 (ENSFCAG00000024006) #25	FAM78B (ENSFCAG00000045831) #26	ENSFCAG00000027706 #28	FAM177B (ENSFCAG00000035967)	BROX (ENSFCAG00000014904)	AIDA (ENSFCAG00000002260)	MIA3 (ENSFCAG00000028371)	HHIPL2 (ENSFCAG00000002257)	DUSP10 (ENSFCAG00000015180)	ENSFCAG00000052361	HLX (ENSFCAG00000034331)	MTARC2 (ENSFCAG00000002973)	CF1H1orf115 (ENSFCAG00000041456)	MARK1 (ENSFCAG00000024724)	RAB3GAP2 (ENSFCAG00000002599)
Atlantogenata	DUPLICATION
Atlantogenata	ANCESTRAL SPECIES	254																ENSGT00390000008608.s #22	ENSGT00940000162687 #23
Afrotheria	ANCESTRAL SPECIES	79	ENSGT00940000157769 #10	ENSGT00940000153464.A.b #11	ENSGT00940000154842.a.b #12	ENSGT00390000013340.k #13	ENSGT00390000013340.l #13	ENSGT00390000014067 #14	ENSGT00940000159036 #15	ENSGT00940000157380 #16	ENSGT00390000004199 #17	ENSGT00940000154374.b #18	ENSGT00940000157774 #19	ENSGT00940000161269 #20	ENSGT00940000156906 #21	ENSGT00390000008608.t.b #22	ENSGT00940000163309	ENSGT00390000008608.s #22	ENSGT00940000162687 #23	ENSGT00390000002659 #24	ENSGT01020000230412.A.c.b.d #25	ENSGT00390000018059.b #26	ENSGT00940000162904 #28	ENSGT00440000039028 #29	ENSGT00390000011644 #30	ENSGT00950000183058.A.a #31	ENSGT00390000003645 #32	ENSGT00940000160248 #33	ENSGT00940000159723 #34	ENSGT00940000157831 #35	ENSGT00390000018208 #36	ENSGT00390000005914.a #37	ENSGT00940000153997.b.a.b
Tenrec	MODERN SPECIES	3875																MGST3 (ENSETEG00000003507) #22	ENSETEG00000003515 #23
Atlantogenata	DUPLICATION
Atlantogenata	ANCESTRAL SPECIES	15	ENSGT00390000007598 #7	ENSGT00510000046975.b.t ##8	ENSGT00940000157769 #10	ENSGT00940000153464.A.b #11	ENSGT00940000154842.a.b #12	ENSGT00390000013340 #13	ENSGT00390000014067 #14	ENSGT00940000159036 #15	ENSGT00940000157380 #16	ENSGT00390000004199 #17	ENSGT00940000154374.b #18	ENSGT00940000157774 #19	ENSGT00940000161269 #20	ENSGT00940000156906 #21	ENSGT00390000008608.t.b #22	ENSGT00390000008608.t.a #22	ENSGT00940000163309	ENSGT00390000002659 #24	ENSGT01020000230412.A.c.b.d #25	ENSGT00390000018059.b #26	ENSGT00940000162904 #28	ENSGT00440000039028 #29	ENSGT00390000011644 #30	ENSGT00950000183058.A.a #31	ENSGT00390000003645 #32	ENSGT00940000160248 #33	ENSGT00940000159723 #34	ENSGT00940000157831 #35	ENSGT00390000018208 #36	ENSGT00390000005914.a #37	ENSGT00940000153997.b.a.b
Xenarthra	ANCESTRAL SPECIES	1222																ENSGT00390000008608.t.a #22	ENSGT00940000163309	ENSGT00390000002659 #24	ENSGT01020000230412.A.c.b.d #25
Armadillo	DUPLICATION
Armadillo	MODERN SPECIES	1176																ENSDNOG00000006088 #22	ALDH9A1 (ENSDNOG00000017232)	TMCO1 (ENSDNOG00000007020) #24	UCK2 (ENSDNOG00000012589) #25	ENSDNOG00000040009
Armadillo	MODERN SPECIES	4506	ENSDNOG00000013005	TEPP (ENSDNOG00000023995)	ZNF319 (ENSDNOG00000042239)	MMP15 (ENSDNOG00000049245)	CFAP20 (ENSDNOG00000007477)	CSNK2A2 (ENSDNOG00000040840)	CCDC113 (ENSDNOG00000047490)	PRSS54 (ENSDNOG00000015196)	GINS3 (ENSDNOG00000024402)	SETD6 (ENSDNOG00000013238)	CNOT1 (ENSDNOG00000013250)	ENSDNOG00000038963	SLC38A7 (ENSDNOG00000048905)	GOT2 (ENSDNOG00000004957)	ENSDNOG00000044937	ENSDNOG00000019616 #22	ENSDNOG00000040780	ENSDNOG00000034082	CDH8 (ENSDNOG00000010731)
Sloth	MODERN SPECIES	3530																MGST3 (ENSCHOG00000012723) #22
Afrotheria	ANCESTRAL SPECIES																	ENSGT00390000008608.t.a #22
Afrotheria_a	ANCESTRAL SPECIES																	ENSGT00390000008608.t.a #22
Elephant	MODERN SPECIES	196	ENSLAFG00000029229	ENSLAFG00000026033	PUS7L (ENSLAFG00000001661)	IRAK4 (ENSLAFG00000001663)	TWF1 (ENSLAFG00000001664)	TMEM117 (ENSLAFG00000001665)	NELL2 (ENSLAFG00000008990)	DBX2 (ENSLAFG00000005006)	ENSLAFG00000026507	ANO6 (ENSLAFG00000009916)	ARID2 (ENSLAFG00000004415)	SCAF11 (ENSLAFG00000022012)	SLC38A1 (ENSLAFG00000005185)	SLC38A2 (ENSLAFG00000011562)	SLC38A4 (ENSLAFG00000016067)	ENSLAFG00000025910 #22	AMIGO2 (ENSLAFG00000009136)	PCED1B (ENSLAFG00000029347)	RPAP3 (ENSLAFG00000007683)	ENDOU (ENSLAFG00000007690)	RAPGEF3 (ENSLAFG00000014781)	SLC48A1 (ENSLAFG00000032459)	HDAC7 (ENSLAFG00000004321)	VDR (ENSLAFG00000006418)	TMEM106C (ENSLAFG00000022701)	COL2A1 (ENSLAFG00000010049)	SENP1 (ENSLAFG00000010002)	PFKM (ENSLAFG00000010006)	ASB8 (ENSLAFG00000010013)	ENSLAFG00000027423	ENSLAFG00000027833
Atlantogenata	ANCESTRAL SPECIES	15	ENSGT00510000046975.b.u #8	ENSGT00390000007598 #7	ENSGT00510000046975.b.t ##8	ENSGT00940000157769 #10	ENSGT00940000153464.A.b #11	ENSGT00940000154842.a.b #12	ENSGT00390000013340 #13	ENSGT00390000014067 #14	ENSGT00940000159036 #15	ENSGT00940000157380 #16	ENSGT00390000004199 #17	ENSGT00940000154374.b #18	ENSGT00940000157774 #19	ENSGT00940000161269 #20	ENSGT00940000156906 #21	ENSGT00390000008608.t.b #22	ENSGT00390000008608.t.a #22	ENSGT00940000163309	ENSGT00390000002659 #24	ENSGT01020000230412.A.c.b.d #25	ENSGT00390000018059.b #26	ENSGT00940000162904 #28	ENSGT00440000039028 #29	ENSGT00390000011644 #30	ENSGT00950000183058.A.a #31	ENSGT00390000003645 #32	ENSGT00940000160248 #33	ENSGT00940000159723 #34	ENSGT00940000157831 #35	ENSGT00390000018208 #36	ENSGT00390000005914.a #37
Afrotheria	ANCESTRAL SPECIES	79	ENSGT00390000007598 #7	ENSGT00510000046975.b.t ##8	ENSGT00940000157769 #10	ENSGT00940000153464.A.b #11	ENSGT00940000154842.a.b #12	ENSGT00390000013340.k #13	ENSGT00390000013340.l #13	ENSGT00390000014067 #14	ENSGT00940000159036 #15	ENSGT00940000157380 #16	ENSGT00390000004199 #17	ENSGT00940000154374.b #18	ENSGT00940000157774 #19	ENSGT00940000161269 #20	ENSGT00940000156906 #21	ENSGT00390000008608.t.b #22	ENSGT00940000163309	ENSGT00390000008608.s #22	ENSGT00940000162687 #23	ENSGT00390000002659 #24	ENSGT01020000230412.A.c.b.d #25	ENSGT00390000018059.b #26	ENSGT00940000162904 #28	ENSGT00440000039028 #29	ENSGT00390000011644 #30	ENSGT00950000183058.A.a #31	ENSGT00390000003645 #32	ENSGT00940000160248 #33	ENSGT00940000159723 #34	ENSGT00940000157831 #35	ENSGT00390000018208 #36
Afrotheria_a	ANCESTRAL SPECIES	83	ENSGT00390000007598 #7	ENSGT00510000046975.b.t ##8	ENSGT00940000157769 #10	ENSGT00940000153464.A.b #11	ENSGT00940000154842.a.b #12	ENSGT00390000013340.k #13	ENSGT00390000013340.l #13	ENSGT00390000014067 #14	ENSGT00940000159036 #15	ENSGT00940000157380 #16	ENSGT00390000004199 #17	ENSGT00940000154374.b #18	ENSGT00940000157774 #19	ENSGT00940000161269 #20	ENSGT00940000156906 #21	ENSGT00390000008608.t.b #22	ENSGT00940000162687 #23	ENSGT00390000002659 #24	ENSGT01020000230412.A.c.b.d #25	ENSGT00390000018059.b #26	ENSGT00940000162904 #28	ENSGT00440000039028 #29	ENSGT00390000011644 #30	ENSGT00950000183058.A.a #31	ENSGT00390000003645 #32	ENSGT00940000160248 #33	ENSGT00940000159723 #34	ENSGT00940000157831 #35	ENSGT00390000018208 #36	ENSGT00390000005914.a #37	ENSGT00940000153997.b.a.b
Elephant	MODERN SPECIES	325	C1orf226 (ENSLAFG00000029908) ##8	UHMK1 (ENSLAFG00000007405) #10	UAP1 (ENSLAFG00000007411) #11	DDR2 (ENSLAFG00000001822) #12	ENSLAFG00000029339 #13	ENSLAFG00000001825 #13	CCDC190 (ENSLAFG00000012498) #14	RGS4 (ENSLAFG00000009641) #15	RGS5 (ENSLAFG00000000531) #16	NUF2 (ENSLAFG00000000533) #17	ENSLAFG00000029919	PBX1 (ENSLAFG00000015741) #18	LMX1A (ENSLAFG00000005114) #19	RXRG (ENSLAFG00000008059) #20	LRRC52 (ENSLAFG00000009139) #21	ENSLAFG00000009103 #22	ENSLAFG00000009105 #23	TMCO1 (ENSLAFG00000015073) #24	UCK2 (ENSLAFG00000012792) #25	FAM78B (ENSLAFG00000009557) #26	ENSLAFG00000026582 #28	POGK (ENSLAFG00000009761) #29	TADA1 (ENSLAFG00000009766) #30	ILDR2 (ENSLAFG00000005768) #31	MAEL (ENSLAFG00000021470) #32	GPA33 (ENSLAFG00000018676) #33	STYXL2 (ENSLAFG00000018677) #34	POU2F1 (ENSLAFG00000018204) #35	CD247 (ENSLAFG00000025660) #36	CREG1 (ENSLAFG00000000658) #37	RCSD1 (ENSLAFG00000017138)
Hyrax	MODERN SPECIES	3197																MGST3 (ENSPCAG00000015774) #22	ALDH9A1 (ENSPCAG00000015817)