Hystricomorpha	ANCESTRAL SPECIES	2	ENSGT00390000007598 #7	ENSGT00510000046975.b.t #8	ENSGT00940000163577 #9	ENSGT00940000157769 #10	ENSGT00940000153464.A.b #11	ENSGT00940000154842.a.b #12	ENSGT00390000013340 #13	ENSGT00390000014067 #14	ENSGT00940000159036 #15	ENSGT00940000157380 #16	ENSGT00390000004199 #17	ENSGT00940000154374.b #18	ENSGT00940000157774 #19	ENSGT00940000161269 #20	ENSGT00940000156906 #21	ENSGT00390000008608 #22	ENSGT00940000163309	ENSGT00390000002659 #24	ENSGT01020000230412.A.c.b.d #26	ENSGT00390000018059.b #27	ENSGT00940000160836.d	ENSGT00940000162904.l ##28	ENSGT00940000162904.k #28	ENSGT00440000039028 #29	ENSGT00390000011644 #30	ENSGT00950000183058.A.a #32	ENSGT00390000003645 #33	ENSGT00940000160248	ENSGT00940000159723 #35	ENSGT00940000157831 #37	ENSGT00390000018208
Hystricomorpha_a	ANCESTRAL SPECIES	11	ENSGT00390000007598 #7	ENSGT00510000046975.b.t #8	ENSGT00940000163577 #9	ENSGT00940000157769 #10	ENSGT00940000153464.A.b #11	ENSGT00940000154842.a.b #12	ENSGT00390000013340 #13	ENSGT00390000014067 #14	ENSGT00940000159036 #15	ENSGT00940000157380 #16	ENSGT00390000004199 #17	ENSGT00940000154374.b #18	ENSGT00940000157774 #19	ENSGT00940000161269 #20	ENSGT00940000156906 #21	ENSGT00390000008608 #22	ENSGT00940000163309	ENSGT00390000002659 #24	ENSGT01020000230412.A.c.b.d #26	ENSGT00390000018059.b #27	ENSGT00940000160836.d	ENSGT00940000162904.l ##28	ENSGT00940000162904.k #28	ENSGT00440000039028 #29	ENSGT00390000011644 #30	ENSGT00950000183058.A.a #32	ENSGT00390000003645 #33	ENSGT00940000160248	ENSGT00940000159723 #35	ENSGT00940000157831 #37	ENSGT00390000018208
Hystricomorpha_b	ANCESTRAL SPECIES	8	ENSGT00390000007598 #7	ENSGT00510000046975.b.t #8	ENSGT00940000163577 #9	ENSGT00940000157769 #10	ENSGT00940000153464.A.b #11	ENSGT00940000154842.a.b #12	ENSGT00390000013340 #13	ENSGT00390000014067 #14	ENSGT00940000159036 #15	ENSGT00940000157380 #16	ENSGT00390000004199 #17	ENSGT00940000154374.b #18	ENSGT00940000157774 #19	ENSGT00940000161269 #20	ENSGT00940000156906 #21	ENSGT00390000008608 #22	ENSGT00940000162687 #23	ENSGT00940000163309	ENSGT00390000002659 #24	ENSGT01020000230412.A.c.b.d #26	ENSGT00390000018059.b #27	ENSGT00940000160836.d	ENSGT00940000162904.l ##28	ENSGT00940000162904.k #28	ENSGT00440000039028 #29	ENSGT00390000011644 #30	ENSGT00950000183058.A.a #32	ENSGT00390000003645 #33	ENSGT00940000160248	ENSGT00940000159723 #35	ENSGT00940000157831 #37
Long-tailed chinchilla	MODERN SPECIES	169	SPATA46 (ENSCLAG00000006220) #7	ENSCLAG00000016599 #8	SH2D1B (ENSCLAG00000005824) #9	ENSCLAG00000004715 #10	UAP1 (ENSCLAG00000007532) #11	DDR2 (ENSCLAG00000008308) #12	HSD17B7 (ENSCLAG00000005057) #13	CCDC190 (ENSCLAG00000006720) #14	RGS4 (ENSCLAG00000009055) #15	RGS5 (ENSCLAG00000006523) #16	NUF2 (ENSCLAG00000009748) #17	PBX1 (ENSCLAG00000009776) #18	LMX1A (ENSCLAG00000006865) #19	RXRG (ENSCLAG00000007511) #20	LRRC52 (ENSCLAG00000006632) #21	MGST3 (ENSCLAG00000007690) #22	ENSCLAG00000006096 #23	TMCO1 (ENSCLAG00000004923) #24	ENSCLAG00000004400 #25	UCK2 (ENSCLAG00000010692) #26	FAM78B (ENSCLAG00000009778) #27	ENSCLAG00000008264 #28	POGK (ENSCLAG00000004943) #29	TADA1 (ENSCLAG00000009819) #30	ENSCLAG00000008737 #31	ILDR2 (ENSCLAG00000008045) #32	MAEL (ENSCLAG00000006862) #33	ENSCLAG00000017324 #34	STYXL2 (ENSCLAG00000006188) #35	ENSCLAG00000005067 #36	POU2F1 (ENSCLAG00000005927) #37
Degu	MODERN SPECIES	157	UHMK1 (ENSODEG00000006380) #10	ENSODEG00000007230	ENSODEG00000006482 #11	ENSODEG00000006001	DDR2 (ENSODEG00000005987) #12	HSD17B7 (ENSODEG00000007036) #13	CCDC190 (ENSODEG00000007128) #14	ENSODEG00000006225	RGS4 (ENSODEG00000007399) #15	RGS5 (ENSODEG00000006436) #16	NUF2 (ENSODEG00000006206) #17	PBX1 (ENSODEG00000008268) #18	LMX1A (ENSODEG00000006784) #19	RXRG (ENSODEG00000007429) #20	LRRC52 (ENSODEG00000007590) #21	MGST3 (ENSODEG00000008534) #22	ALDH9A1 (ENSODEG00000006714)	TMCO1 (ENSODEG00000006261) #24	ENSODEG00000019301	UCK2 (ENSODEG00000005895) #26	ENSODEG00000019347	ENSODEG00000006713	FAM78B (ENSODEG00000006543) #27	ENSODEG00000019271
Guinea pig	MODERN SPECIES	39		UHMK1 (ENSCPOG00000004561) #10	UAP1 (ENSCPOG00000004568) #11	DDR2 (ENSCPOG00000009721) #12	HSD17B7 (ENSCPOG00000030957) #13	CCDC190 (ENSCPOG00000038251) #14	RGS4 (ENSCPOG00000031194) #15	RGS5 (ENSCPOG00000033467) #16	ENSCPOG00000039704	NUF2 (ENSCPOG00000015019) #17	PBX1 (ENSCPOG00000005958) #18	ENSCPOG00000038291	LMX1A (ENSCPOG00000025320) #19	RXRG (ENSCPOG00000015343) #20	LRRC52 (ENSCPOG00000015344) #21	MGST3 (ENSCPOG00000015346) #22	ALDH9A1 (ENSCPOG00000015347)	TMCO1 (ENSCPOG00000013728) #24	UCK2 (ENSCPOG00000032384) #26	FAM78B (ENSCPOG00000007868) #27	ENSCPOG00000005192	ENSCPOG00000026225 ##28	ENSCPOG00000022892 #28	POGK (ENSCPOG00000026820) #29	TADA1 (ENSCPOG00000025598) #30	ILDR2 (ENSCPOG00000024220) #32	MAEL (ENSCPOG00000005046) #33	GPA33 (ENSCPOG00000000085)	STYXL2 (ENSCPOG00000002322) #35	POU2F1 (ENSCPOG00000008237) #37	CD247 (ENSCPOG00000022786)
Naked mole-rat female	MODERN SPECIES	20	SPATA46 (ENSHGLG00000032913) #7	ENSHGLG00000003369 #8	ENSHGLG00000004032 #10	ENSHGLG00000013192 #11	DDR2 (ENSHGLG00000007636) #12	HSD17B7 (ENSHGLG00000009322) #13	RGS4 (ENSHGLG00000044423) #15	ENSHGLG00000035946	ENSHGLG00000032628	Rgs5 (ENSHGLG00000042926) #16	NUF2 (ENSHGLG00000003907) #17	PBX1 (ENSHGLG00000004849) #18	LMX1A (ENSHGLG00000003212) #19	LRRC52 (ENSHGLG00000003658) #21	RXRG (ENSHGLG00000003380) #20	MGST3 (ENSHGLG00000003866) #22	ALDH9A1 (ENSHGLG00000004082)	ENSHGLG00000004945 #24	ENSHGLG00000031882	UCK2 (ENSHGLG00000049531) #26	FAM78B (ENSHGLG00000007090) #27	ENSHGLG00000001336	ENSHGLG00000001797 ##28	POGK (ENSHGLG00000011531) #29	TADA1 (ENSHGLG00000015074) #30	ILDR2 (ENSHGLG00000019541) #32	MAEL (ENSHGLG00000013438) #33	GPA33 (ENSHGLG00000002446)	STYXL2 (ENSHGLG00000050560) #35	ENSHGLG00000002671	POU2F1 (ENSHGLG00000003955) #37