Glires	ANCESTRAL SPECIES	5	ENSGT00900000143690	ENSGT00390000004803 #9	ENSGT00950000183032.B.b.b #10	ENSGT00940000161275 #11	ENSGT01100000263517.b.d.m.a.a.a.a.c	ENSGT01100000263517.b.d.m.a.a.a.a.d.b	ENSGT00950000182985.b.a #13	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337 #19	ENSGT00530000064023.b ##20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #24	ENSGT00390000011642 #25	ENSGT00950000183154.a #26	ENSGT00530000063692.b #28	ENSGT00940000155683 #29	ENSGT00940000155393.d #30	ENSGT00940000158236 #32	ENSGT00940000154428.b #31	ENSGT00940000154428.a #34	ENSGT00530000063946.b #36	ENSGT00940000157012 #37	ENSGT00950000183142.a.b.a.a	ENSGT00940000161252	ENSGT00940000160501	ENSGT00940000155634
Rodentia	ANCESTRAL SPECIES	6	ENSGT00900000143690	ENSGT00390000004803 #9	ENSGT00950000183032.B.b.b #10	ENSGT00940000161275 #11	ENSGT01100000263517.b.d.m.a.a.a.a.c	ENSGT01100000263517.b.d.m.a.a.a.a.d.b	ENSGT00950000182985.b.a #13	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337 #19	ENSGT00530000064023.b ##20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #24	ENSGT00390000011642 #25	ENSGT00950000183154.a #26	ENSGT00530000063692.b #28	ENSGT00940000155683 #29	ENSGT00940000155393.d #30	ENSGT00940000158236 #32	ENSGT00940000154428.b #31	ENSGT00940000154428.a #34	ENSGT00530000063946.b #36	ENSGT00940000157012 #37	ENSGT00950000183142.a.b.a.a	ENSGT00940000161252	ENSGT00940000160501	ENSGT00940000155634
Rodentia_B	ANCESTRAL SPECIES	18	ENSGT00390000008373	ENSGT00940000156638 #7	ENSGT00940000157684 #8	ENSGT00390000004803 #9	ENSGT00950000183032.B.b.b #10	ENSGT00940000161275 #11	ENSGT00950000182985.b.a #13	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337 #19	ENSGT00530000064023.b ##20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #24	ENSGT00390000011642 #25	ENSGT00950000183154.a #26	ENSGT00530000063692.b #28	ENSGT00940000155683 #29	ENSGT00940000155393.d #30	ENSGT00940000158236 #32	ENSGT00940000154428.b #31	ENSGT00940000154428.a #34	ENSGT00530000063946.b #36	ENSGT00940000157012 #37	ENSGT00950000183142.a.b.a.a	ENSGT00940000161252	ENSGT00940000160501	ENSGT00940000155634
Myomorpha	ANCESTRAL SPECIES	21	ENSGT00390000008373	ENSGT00940000156638 #7	ENSGT00940000157684 #8	ENSGT00390000004803 #9	ENSGT00950000183032.B.b.b #10	ENSGT00940000161275 #11	ENSGT00950000182985.b.a #13	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337 #19	ENSGT00530000064023.b ##20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #24	ENSGT00390000011642 #25	ENSGT00950000183154.a #26	ENSGT00530000063692.b #28	ENSGT00940000155683 #29	ENSGT00940000155393.d #30	ENSGT00940000158236 #32	ENSGT00940000154428.b #31	ENSGT00940000154428.a #34	ENSGT00530000063946.b #36	ENSGT00940000157012 #37	ENSGT00950000183142.a.b.a.a	ENSGT00940000161252	ENSGT00940000160501	ENSGT00940000155634
Lesser Egyptian jerboa	DUPLICATION
Lesser Egyptian jerboa	MODERN SPECIES	44	ENSJJAG00000021207 #7	Lats1 (ENSJJAG00000019456) #8	Nup43 (ENSJJAG00000012578) #9	Pcmt1 (ENSJJAG00000023560) #10	Lrp11 (ENSJJAG00000024401) #11	ENSJJAG00000018910 #12	Ppp1r14c (ENSJJAG00000020290) #13	ENSJJAG00000024322 #14	Plekhg1 (ENSJJAG00000023794) #15	Mthfd1l (ENSJJAG00000014266) #16	Akap12 (ENSJJAG00000021521) #17	Zbtb2 (ENSJJAG00000016308) #18	Rmnd1 (ENSJJAG00000008798) #19	ENSJJAG00000015720 #20	ENSJJAG00000011473 #21	Esr1 (ENSJJAG00000015406) #22	ENSJJAG00000010411 #23	Syne1 (ENSJJAG00000014032) #24	Myct1 (ENSJJAG00000022731) #25	Vip (ENSJJAG00000018682) #26	ENSJJAG00000005271 #27	Fbxo5 (ENSJJAG00000006490) #28	Mtrf1l (ENSJJAG00000024141) #29	Rgs17 (ENSJJAG00000009873) #30	Ipcef1 (ENSJJAG00000001014) #31	Oprm1 (ENSJJAG00000024159) #32	ENSJJAG00000012246 #33	Cnksr3 (ENSJJAG00000023905) #34	ENSJJAG00000012164 #35	Scaf8 (ENSJJAG00000020480) #36	Tiam2 (ENSJJAG00000022310) #37
Lesser Egyptian jerboa	MODERN SPECIES	44	Lats1 (ENSJJAG00000019456) #8	Nup43 (ENSJJAG00000012578) #9	Pcmt1 (ENSJJAG00000023560) #10	Lrp11 (ENSJJAG00000024401) #11	ENSJJAG00000018910 #12	Ppp1r14c (ENSJJAG00000020290) #13	ENSJJAG00000024322 #14	Plekhg1 (ENSJJAG00000023794) #15	Mthfd1l (ENSJJAG00000014266) #16	Akap12 (ENSJJAG00000021521) #17	Zbtb2 (ENSJJAG00000016308) #18	Rmnd1 (ENSJJAG00000008798) #19	ENSJJAG00000015720 #20	ENSJJAG00000011473 #21	Esr1 (ENSJJAG00000015406) #22	ENSJJAG00000010411 #23	Syne1 (ENSJJAG00000014032) #24	Myct1 (ENSJJAG00000022731) #25	Vip (ENSJJAG00000018682) #26	ENSJJAG00000005271 #27	Fbxo5 (ENSJJAG00000006490) #28	Mtrf1l (ENSJJAG00000024141) #29	Rgs17 (ENSJJAG00000009873) #30	Ipcef1 (ENSJJAG00000001014) #31	Oprm1 (ENSJJAG00000024159) #32	ENSJJAG00000012246 #33	Cnksr3 (ENSJJAG00000023905) #34	ENSJJAG00000012164 #35	Scaf8 (ENSJJAG00000020480) #36	Tiam2 (ENSJJAG00000022310) #37	Tfb1m (ENSJJAG00000022171)
Muroidea	ANCESTRAL SPECIES	22	ENSGT00390000008373	ENSGT00940000156638 #7	ENSGT00940000157684 #8	ENSGT00390000004803 #9	ENSGT00950000183032.B.b.b #10	ENSGT00940000161275 #11	ENSGT00950000182985.b.a #13	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337 #19	ENSGT00530000064023.b ##20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #24	ENSGT00390000011642 #25	ENSGT00950000183154.a #26	ENSGT00530000063692.b #28	ENSGT00940000155683 #29	ENSGT00940000155393.d #30	ENSGT00940000158236 #32	ENSGT00940000154428.b #31	ENSGT00940000154428.a #34	ENSGT00530000063946.b #36	ENSGT00940000157012 #37	ENSGT00950000183142.a.b.a.a	ENSGT00940000161252	ENSGT00940000160501	ENSGT00940000155634
Muroidea_A	ANCESTRAL SPECIES	11	ENSGT00390000008373	ENSGT00940000156638 #7	ENSGT00940000157684 #8	ENSGT00390000004803 #9	ENSGT00950000183032.B.b.b #10	ENSGT00940000161275 #11	ENSGT00950000182985.b.a #13	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337 #19	ENSGT00530000064023.b ##20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #24	ENSGT00390000011642 #25	ENSGT00950000183154.a #26	ENSGT00530000063692.b #28	ENSGT00940000155683 #29	ENSGT00940000155393.d #30	ENSGT00940000158236 #32	ENSGT00940000154428.b #31	ENSGT00940000154428.a #34	ENSGT00530000063946.b #36	ENSGT00940000157012 #37	ENSGT00950000183142.a.b.a.a	ENSGT00940000161252	ENSGT00940000160501	ENSGT00940000155634
Cricetidae	ANCESTRAL SPECIES	11	ENSGT00390000008373	ENSGT00940000156638 #7	ENSGT00940000157684 #8	ENSGT00390000004803 #9	ENSGT00950000183032.B.b.b #10	ENSGT00940000161275 #11	ENSGT00950000182985.b.a #13	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337 #19	ENSGT00530000064023.b ##20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #24	ENSGT00390000011642 #25	ENSGT00950000183154.a #26	ENSGT00530000063692.b #28	ENSGT00940000155683 #29	ENSGT00940000155393.d #30	ENSGT00940000158236 #32	ENSGT00940000154428.b #31	ENSGT00940000154428.a #34	ENSGT00530000063946.b #36	ENSGT00940000157012 #37	ENSGT00950000183142.a.b.a.a	ENSGT00940000161252	ENSGT00940000160501	ENSGT00940000155634
Cricetidae_B	ANCESTRAL SPECIES	21	ENSGT00390000008373	ENSGT00940000156638 #7	ENSGT00940000157684 #8	ENSGT00390000004803 #9	ENSGT00950000183032.B.b.b #10	ENSGT00940000161275 #11	ENSGT00950000182985.b.a #13	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337 #19	ENSGT00530000064023.b ##20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #24	ENSGT00390000011642 #25	ENSGT00950000183154.a #26	ENSGT00530000063692.b #28	ENSGT00940000155683 #29	ENSGT00940000155393.d #30	ENSGT00940000158236 #32	ENSGT00940000154428.b #31	ENSGT00940000154428.a #34	ENSGT00530000063946.b #36	ENSGT00940000157012 #37	ENSGT00940000161252	ENSGT00950000183142.a.b.a.a	ENSGT00940000160501	ENSGT00940000155634
Northern American deer mouse	MODERN SPECIES	7	ENSPEMG00000027039	ENSPEMG00000025014	ENSPEMG00000028469	ENSPEMG00000029355	ENSPEMG00000031117	Ppp1r14c (ENSPEMG00000026419) #13	Iyd (ENSPEMG00000009998) #14	Plekhg1 (ENSPEMG00000003381) #15	Mthfd1l (ENSPEMG00000012428) #16	ENSPEMG00000028722 #17	Zbtb2 (ENSPEMG00000028248) #18	Rmnd1 (ENSPEMG00000014544) #19	Armt1 (ENSPEMG00000027664) ##20	Ccdc170 (ENSPEMG00000018858) #21	ENSPEMG00000028412	Esr1 (ENSPEMG00000012747) #22	ENSPEMG00000000704 #24	ENSPEMG00000029017 #24	ENSPEMG00000013933	ENSPEMG00000007014 #24	Myct1 (ENSPEMG00000016041) #25	Vip (ENSPEMG00000007974) #26	ENSPEMG00000005147	Fbxo5 (ENSPEMG00000017534) #28	Mtrf1l (ENSPEMG00000018112) #29	Rgs17 (ENSPEMG00000002088) #30	Oprm1 (ENSPEMG00000013691) #32	Ipcef1 (ENSPEMG00000017460) #31	Cnksr3 (ENSPEMG00000009492) #34	Scaf8 (ENSPEMG00000010531) #36	Tiam2 (ENSPEMG00000019186) #37
Prairie vole	MODERN SPECIES	358	ENSMOCG00000021945	Grik2 (ENSMOCG00000022205)	Ascc3 (ENSMOCG00000004549)	Sim1 (ENSMOCG00000017754)	ENSMOCG00000008070	Ppp1r14c (ENSMOCG00000002551) #13	Iyd (ENSMOCG00000012475) #14	Plekhg1 (ENSMOCG00000006027) #15	Mthfd1l (ENSMOCG00000011918) #16	ENSMOCG00000019373 #17	Zbtb2 (ENSMOCG00000018175) #18	Rmnd1 (ENSMOCG00000012373) #19	Armt1 (ENSMOCG00000008335) ##20	Ccdc170 (ENSMOCG00000015340) #21	ENSMOCG00000008666	Esr1 (ENSMOCG00000004623) #22	Syne1 (ENSMOCG00000003007) #24	Myct1 (ENSMOCG00000003327) #25	Vip (ENSMOCG00000000402) #26	Fbxo5 (ENSMOCG00000016622) #28	Mtrf1l (ENSMOCG00000016147) #29	Rgs17 (ENSMOCG00000013891) #30	Oprm1 (ENSMOCG00000009671) #32	Ipcef1 (ENSMOCG00000015115) #31	Cnksr3 (ENSMOCG00000020668) #34	Scaf8 (ENSMOCG00000014950) #36	Tiam2 (ENSMOCG00000019544) #37	ENSMOCG00000017009	Tfb1m (ENSMOCG00000013879)	Nox3 (ENSMOCG00000002324)	Arid1b (ENSMOCG00000017619)
Cricetinae	ANCESTRAL SPECIES	7	ENSGT00390000008373	ENSGT00940000156638 #7	ENSGT00940000157684 #8	ENSGT00390000004803 #9	ENSGT00950000183032.B.b.b #10	ENSGT00940000161275 #11	ENSGT00950000182985.b.a #13	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337 #19	ENSGT00530000064023.b ##20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #24	ENSGT00940000165162	ENSGT00390000011642 #25	ENSGT00950000183154.a #26	ENSGT00530000063692.b #28	ENSGT00940000155683 #29	ENSGT00940000155393.d #30	ENSGT00940000158236 #32	ENSGT00940000154428.b #31	ENSGT00940000154428.a #34	ENSGT00530000063946.b #36	ENSGT00940000157012 #37	ENSGT00950000183142.a.b.a.a	ENSGT00940000161252	ENSGT00940000160501
Chinese hamster chok1gshd	MODERN SPECIES	1	Ginm1 (ENSCGRG00001022724)	Katna1 (ENSCGRG00001023013) #7	Lats1 (ENSCGRG00001023972) #8	ENSCGRG00001019911 #9	Pcmt1 (ENSCGRG00001009158) #10	Lrp11 (ENSCGRG00001010309) #11	Ppp1r14c (ENSCGRG00001022707) #13	Iyd (ENSCGRG00001022969) #14	Plekhg1 (ENSCGRG00001023431) #15	Mthfd1l (ENSCGRG00001022372) #16	Akap12 (ENSCGRG00001022879) #17	Zbtb2 (ENSCGRG00001023273) #18	Rmnd1 (ENSCGRG00001018312) #19	Armt1 (ENSCGRG00001019042) ##20	Ccdc170 (ENSCGRG00001019582) #21	Esr1 (ENSCGRG00001024268) #22	ENSCGRG00001024508 #24	ENSCGRG00001016292	ENSCGRG00001017406 #24	Myct1 (ENSCGRG00001007389) #25	Vip (ENSCGRG00001023726) #26	Fbxo5 (ENSCGRG00001024225) #28	Mtrf1l (ENSCGRG00001024662) #29	Rgs17 (ENSCGRG00001008622) #30	ENSCGRG00001007014	Oprm1 (ENSCGRG00001003333) #32	Ipcef1 (ENSCGRG00001002463) #31	Cnksr3 (ENSCGRG00001012107) #34	Scaf8 (ENSCGRG00001020167) #36	Tiam2 (ENSCGRG00001023036) #37	Tfb1m (ENSCGRG00001022866)
Golden Hamster	MODERN SPECIES	621	ENSMAUG00000016471 #7	ENSMAUG00000012301 #7	Lats1 (ENSMAUG00000020092) #8	Nup43 (ENSMAUG00000018659) #9	Pcmt1 (ENSMAUG00000011320) #10	Lrp11 (ENSMAUG00000014809) #11	Ppp1r14c (ENSMAUG00000019718) #13	Iyd (ENSMAUG00000013810) #14	ENSMAUG00000011570 #15	Mthfd1l (ENSMAUG00000016191) #16	ENSMAUG00000020409 #17	Zbtb2 (ENSMAUG00000008627) #18	Rmnd1 (ENSMAUG00000011585) #19	Armt1 (ENSMAUG00000012945) ##20	Ccdc170 (ENSMAUG00000008640) #21	Esr1 (ENSMAUG00000006785) #22	ENSMAUG00000014937 #24	ENSMAUG00000012320	ENSMAUG00000019847 #24	Myct1 (ENSMAUG00000014906) #25	Vip (ENSMAUG00000014470) #26	Fbxo5 (ENSMAUG00000000824) #28	Mtrf1l (ENSMAUG00000017702) #29	ENSMAUG00000021559	Oprm1 (ENSMAUG00000016741) #32	Ipcef1 (ENSMAUG00000020692) #31	ENSMAUG00000008972	Cnksr3 (ENSMAUG00000017992) #34	Scaf8 (ENSMAUG00000009513) #36	Tiam2 (ENSMAUG00000016491) #37	Tfb1m (ENSMAUG00000006705)
Murinae	ANCESTRAL SPECIES	29							ENSGT00950000182985.b.a #13	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337 #19	ENSGT00530000064023.b ##20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #24	ENSGT00390000011642 #25	ENSGT00950000183154.a #26	ENSGT00530000063692.b #28	ENSGT00940000155683 #29	ENSGT00940000155393.d #30	ENSGT00940000158236 #32	ENSGT00940000154428.b #31	ENSGT00940000154428.a #34	ENSGT00530000063946.b #36	ENSGT00940000157012 #37	ENSGT00950000183142.a.b.a.a	ENSGT00940000161252	ENSGT00940000160501	ENSGT00940000155634
Mus	ANCESTRAL SPECIES	15							ENSGT00950000182985.b.a #13	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337 #19	ENSGT00530000064023.b ##20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #24	ENSGT00390000011642 #25	ENSGT00950000183154.a #26	ENSGT00530000063692.b #28	ENSGT00940000155683 #29	ENSGT00940000155393.d #30	ENSGT00940000158236 #32	ENSGT00940000154428.b #31	ENSGT00940000154428.a #34	ENSGT00940000161275 #11	ENSGT00950000183032.B.b.b #10	ENSGT00390000004803 #9	ENSGT00940000157684 #8	ENSGT00940000156638 #7	ENSGT00390000008373
Mus_A	ANCESTRAL SPECIES	11							ENSGT00950000182985.b.a #13	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401.a #18	ENSGT00390000013337 #19	ENSGT00530000064023.b ##20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #24	ENSGT00390000011642 #25	ENSGT00950000183154.a #26	ENSGT00530000063692.b #28	ENSGT00940000155683 #29	ENSGT00940000155393.d #30	ENSGT00940000158236 #32	ENSGT00940000154428.b #31	ENSGT00940000154428.a #34	ENSGT00940000161275 #11	ENSGT00950000183032.B.b.b #10	ENSGT00390000004803 #9	ENSGT00940000157684 #8	ENSGT00940000156638 #7	ENSGT00390000008373
Mus_B	ANCESTRAL SPECIES	10					ENSGT00940000169591.d	ENSGT01100000263517.b.d.m.a.a.a.a.c.x	ENSGT00950000182985.b.a #13	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401.a #18	ENSGT00390000013337 #19	ENSGT00530000064023.b ##20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #24	ENSGT00390000011642 #25	ENSGT00950000183154.a #26	ENSGT00530000063692.b #28	ENSGT00940000155683 #29	ENSGT00940000155393.d #30	ENSGT00940000158236 #32	ENSGT00940000154428.b #31	ENSGT00940000154428.a #34	ENSGT01100000263531.A	ENSGT00940000161275 #11	ENSGT00950000183032.B.b.b #10	ENSGT00390000004803 #9	ENSGT00940000157684 #8	ENSGT00940000156638 #7
Mouse	MODERN SPECIES	1						H60c (ENSMUSG00000091618)	Ppp1r14c (ENSMUSG00000040653) #13	Iyd (ENSMUSG00000019762) #14	Plekhg1 (ENSMUSG00000040624) #15	Mthfd1l (ENSMUSG00000040675) #16	Akap12 (ENSMUSG00000038587) #17	Zbtb2 (ENSMUSG00000075327) #18	Rmnd1 (ENSMUSG00000019763) #19	Armt1 (ENSMUSG00000061759) ##20	Ccdc170 (ENSMUSG00000019767) #21	Esr1 (ENSMUSG00000019768) #22	Syne1 (ENSMUSG00000096054) #24	Myct1 (ENSMUSG00000046916) #25	Vip (ENSMUSG00000019772) #26	Fbxo5 (ENSMUSG00000019773) #28	Mtrf1l (ENSMUSG00000019774) #29	Rgs17 (ENSMUSG00000019775) #30	Oprm1 (ENSMUSG00000000766) #32	Ipcef1 (ENSMUSG00000064065) #31	Cnksr3 (ENSMUSG00000015202) #34	Ulbp1 (ENSMUSG00000079685)	Lrp11 (ENSMUSG00000019796) #11	Pcmt1 (ENSMUSG00000019795) #10	Nup43 (ENSMUSG00000040034) #9	Lats1 (ENSMUSG00000040021) #8	Katna1 (ENSMUSG00000019794) #7
Mus_C	ANCESTRAL SPECIES	7					ENSGT00940000169591.d	ENSGT01100000263517.b.d.m.a.a.a.a.c.x	ENSGT00950000182985.b.a #13	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401.a #18	ENSGT00390000013337 #19	ENSGT00530000064023.b ##20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #24	ENSGT00390000011642 #25	ENSGT00950000183154.a #26	ENSGT00530000063692.b #28	ENSGT00940000155683 #29	ENSGT00940000155393.d #30	ENSGT00940000158236 #32	ENSGT00940000154428.b #31	ENSGT00940000154428.a #34	ENSGT01100000263531.A	ENSGT00940000161275 #11	ENSGT00950000183032.B.b.b #10	ENSGT00390000004803 #9	ENSGT00940000157684 #8	ENSGT00940000156638 #7
spretus	MODERN SPECIES	1			MGP_SPRETEiJ_G0015877	MGP_SPRETEiJ_G0015878	MGP_SPRETEiJ_G0015880	MGP_SPRETEiJ_G0015881	Ppp1r14c (MGP_SPRETEiJ_G0015882) #13	Iyd (MGP_SPRETEiJ_G0015883) #14	Plekhg1 (MGP_SPRETEiJ_G0015884) #15	Mthfd1l (MGP_SPRETEiJ_G0015885) #16	Akap12 (MGP_SPRETEiJ_G0015886) #17	Zbtb2 (MGP_SPRETEiJ_G0015887) #18	Rmnd1 (MGP_SPRETEiJ_G0015888) #19	Armt1 (MGP_SPRETEiJ_G0015889) ##20	Ccdc170 (MGP_SPRETEiJ_G0015890) #21	Esr1 (MGP_SPRETEiJ_G0015891) #22	MGP_SPRETEiJ_G0015893	Myct1 (MGP_SPRETEiJ_G0015895) #25	Vip (MGP_SPRETEiJ_G0015896) #26	Fbxo5 (MGP_SPRETEiJ_G0015897) #28	Mtrf1l (MGP_SPRETEiJ_G0015898) #29	Rgs17 (MGP_SPRETEiJ_G0015899) #30	Oprm1 (MGP_SPRETEiJ_G0015900) #32	Ipcef1 (MGP_SPRETEiJ_G0015901) #31	Cnksr3 (MGP_SPRETEiJ_G0015902) #34	MGP_SPRETEiJ_G0015903	Lrp11 (MGP_SPRETEiJ_G0015904) #11	MGP_SPRETEiJ_G0015905 #10	Nup43 (MGP_SPRETEiJ_G0015906) #9	Lats1 (MGP_SPRETEiJ_G0015907) #8	Katna1 (MGP_SPRETEiJ_G0015908) #7
Steppe mouse	MODERN SPECIES	3173		ENSMSIG00000028950	ENSMSIG00000028953	H60c (ENSMSIG00000028958)	ENSMSIG00000028966 #13	ENSMSIG00000028971 #14	Plekhg1 (ENSMSIG00000028989) #15	Mthfd1l (ENSMSIG00000029009) #16	ENSMSIG00000029049	Akap12 (ENSMSIG00000029068) #17	ENSMSIG00000029085	Zbtb2 (ENSMSIG00000029096) #18	Rmnd1 (ENSMSIG00000029100) #19	Armt1 (ENSMSIG00000029112) ##20	Ccdc170 (ENSMSIG00000029125) #21	Esr1 (ENSMSIG00000029132) #22	Syne1 (ENSMSIG00000029148) #24	Myct1 (ENSMSIG00000029269) #25	Vip (ENSMSIG00000029272) #26
Ryukyu mouse	MODERN SPECIES	1							Ppp1r14c (MGP_CAROLIEiJ_G0015077) #13	Iyd (MGP_CAROLIEiJ_G0015078) #14	Plekhg1 (MGP_CAROLIEiJ_G0015079) #15	Mthfd1l (MGP_CAROLIEiJ_G0015080) #16	Akap12 (MGP_CAROLIEiJ_G0015081) #17	Zbtb2 (MGP_CAROLIEiJ_G0015082) #18	Rmnd1 (MGP_CAROLIEiJ_G0015083) #19	Armt1 (MGP_CAROLIEiJ_G0015084) ##20	Ccdc170 (MGP_CAROLIEiJ_G0015085) #21	Esr1 (MGP_CAROLIEiJ_G0015086) #22	MGP_CAROLIEiJ_G0015087 #24	MGP_CAROLIEiJ_G0015088	Myct1 (MGP_CAROLIEiJ_G0015089) #25	Vip (MGP_CAROLIEiJ_G0015090) #26	Fbxo5 (MGP_CAROLIEiJ_G0015091) #28	Mtrf1l (MGP_CAROLIEiJ_G0015092) #29	Rgs17 (MGP_CAROLIEiJ_G0015093) #30	Oprm1 (MGP_CAROLIEiJ_G0015094) #32	Ipcef1 (MGP_CAROLIEiJ_G0015095) #31	Cnksr3 (MGP_CAROLIEiJ_G0015096) #34	Lrp11 (MGP_CAROLIEiJ_G0015097) #11	MGP_CAROLIEiJ_G0015098 #10	Nup43 (MGP_CAROLIEiJ_G0015099) #9	Lats1 (MGP_CAROLIEiJ_G0015100) #8	MGP_CAROLIEiJ_G0015101 #7
Shrew mouse	MODERN SPECIES	13	Cbs (MGP_PahariEiJ_G0023690)	U2af1 (MGP_PahariEiJ_G0023691)	Cryaa (MGP_PahariEiJ_G0023692)	Sik1 (MGP_PahariEiJ_G0023693)	MGP_PahariEiJ_G0023694	Rrp1b (MGP_PahariEiJ_G0023695)	Ppp1r14c (MGP_PahariEiJ_G0023696) #13	Iyd (MGP_PahariEiJ_G0023697) #14	Plekhg1 (MGP_PahariEiJ_G0023698) #15	Mthfd1l (MGP_PahariEiJ_G0023699) #16	Akap12 (MGP_PahariEiJ_G0023700) #17	Zbtb2 (MGP_PahariEiJ_G0023701) #18	MGP_PahariEiJ_G0023702	Armt1 (MGP_PahariEiJ_G0023703) ##20	MGP_PahariEiJ_G0023704 #21	Esr1 (MGP_PahariEiJ_G0023705) #22	MGP_PahariEiJ_G0023706 #24	MGP_PahariEiJ_G0023707	Myct1 (MGP_PahariEiJ_G0023708) #25	Vip (MGP_PahariEiJ_G0023709) #26	Fbxo5 (MGP_PahariEiJ_G0023710) #28	Mtrf1l (MGP_PahariEiJ_G0023711) #29	Rgs17 (MGP_PahariEiJ_G0023712) #30	Oprm1 (MGP_PahariEiJ_G0023713) #32	Ipcef1 (MGP_PahariEiJ_G0023714) #31	Cnksr3 (MGP_PahariEiJ_G0023715) #34	Lrp11 (MGP_PahariEiJ_G0023716) #11	Pcmt1 (MGP_PahariEiJ_G0023717) #10	Nup43 (MGP_PahariEiJ_G0023718) #9	Lats1 (MGP_PahariEiJ_G0023719) #8	Katna1 (MGP_PahariEiJ_G0023720) #7
Rat	MODERN SPECIES		ENSRNOG00000063413	ENSRNOG00000067926	ENSRNOG00000069813	ENSRNOG00000067477	ENSRNOG00000070838	AABR07001348.1 (ENSRNOG00000023081)	Ppp1r14c (ENSRNOG00000016368) #13	Iyd (ENSRNOG00000016286) #14	Plekhg1 (ENSRNOG00000016011) #15	Mthfd1l (ENSRNOG00000019582) #16	Akap12 (ENSRNOG00000019549) #17	Zbtb2 (ENSRNOG00000019544) #18	Rmnd1 (ENSRNOG00000019501) #19	Armt1 (ENSRNOG00000019489) ##20	Ccdc170 (ENSRNOG00000024280) #21	Esr1 (ENSRNOG00000019358) #22	Syne1 (ENSRNOG00000018960) #24	Myct1 (ENSRNOG00000018858) #25	Vip (ENSRNOG00000018808) #26	Fbxo5 (ENSRNOG00000024077) #28	Mtrf1l (ENSRNOG00000018773) #29	Rgs17 (ENSRNOG00000018690) #30	AABR07001408.1 (ENSRNOG00000033265)	ENSRNOG00000070385	Oprm1 (ENSRNOG00000018191) #32	Ipcef1 (ENSRNOG00000018163) #31	Cnksr3 (ENSRNOG00000018052) #34	AABR07001435.1 (ENSRNOG00000004144)	Scaf8 (ENSRNOG00000016919) #36	Tiam2 (ENSRNOG00000016728) #37	Tfb1m (ENSRNOG00000056223)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1401						Iyd (ENSNGAG00000000377) #14	ENSNGAG00000010901	Plekhg1 (ENSNGAG00000002088) #15	Mthfd1l (ENSNGAG00000014110) #16	Akap12 (ENSNGAG00000001974) #17	Zbtb2 (ENSNGAG00000001004) #18	Rmnd1 (ENSNGAG00000003570) #19	Armt1 (ENSNGAG00000020620) ##20	Ccdc170 (ENSNGAG00000013308) #21	ENSNGAG00000001180	Esr1 (ENSNGAG00000017049) #22	ENSNGAG00000000637 #24
Kangaroo rat	MODERN SPECIES	417	ENSDORG00000025692 #7	ENSDORG00000029134 #7	Lats1 (ENSDORG00000007190) #8	ENSDORG00000002203 #9	Pcmt1 (ENSDORG00000003137) #10	Lrp11 (ENSDORG00000003139) #11	ENSDORG00000023774	Ppp1r14c (ENSDORG00000029153) #13	Iyd (ENSDORG00000016201) #14	ENSDORG00000029716 #15	Mthfd1l (ENSDORG00000006234) #16	Zbtb2 (ENSDORG00000013305) #18	ENSDORG00000025869 #19	ENSDORG00000000434 ##20	Ccdc170 (ENSDORG00000014673) #21	Esr1 (ENSDORG00000010443) #22	Syne1 (ENSDORG00000013226) #24	Myct1 (ENSDORG00000027276) #25	Vip (ENSDORG00000015940) #26	Fbxo5 (ENSDORG00000000495) #28	Mtrf1l (ENSDORG00000010997) #29	Rgs17 (ENSDORG00000011002) #30	Oprm1 (ENSDORG00000002315) #32	Ipcef1 (ENSDORG00000023655) #31	Cnksr3 (ENSDORG00000008824) #34	ENSDORG00000027053	Scaf8 (ENSDORG00000006391) #36	Tiam2 (ENSDORG00000012933) #37	Tfb1m (ENSDORG00000012938)	Nox3 (ENSDORG00000009803)	Arid1b (ENSDORG00000014985)
Rodentia_A	ANCESTRAL SPECIES	8	ENSGT00900000143690	ENSGT00390000004803 #9	ENSGT00950000183032.B.b.b #10	ENSGT00940000161275 #11	ENSGT01100000263517.b.d.m.a.a.a.a.c	ENSGT01100000263517.b.d.m.a.a.a.a.d.b	ENSGT00950000182985.b.a #13	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337 #19	ENSGT00530000064023.b ##20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #24	ENSGT00390000011642 #25	ENSGT00950000183154.a #26	ENSGT00530000063692.b #28	ENSGT00940000155683 #29	ENSGT00940000155393.d #30	ENSGT00940000158236 #32	ENSGT00940000154428.b #31	ENSGT00940000154428.a #34	ENSGT00530000063946.b #36	ENSGT00940000157012 #37	ENSGT00940000161252	ENSGT00950000183142.a.b.a.a	ENSGT00940000160501	ENSGT00940000155634
Sciuridae	ANCESTRAL SPECIES	1	ENSGT00900000143690	ENSGT00390000004803 #9	ENSGT00950000183032.B.b.b #10	ENSGT00940000161275 #11	ENSGT01100000263517.b.d.m.a.a.a.a.c	ENSGT01100000263517.b.d.m.a.a.a.a.d.b	ENSGT00950000182985.b.a #13	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337 #19	ENSGT00530000064023.b ##20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #24	ENSGT00390000011642 #25	ENSGT00950000183154.a #26	ENSGT00530000063692.b #28	ENSGT00940000155683 #29	ENSGT00940000155393.d #30	ENSGT00940000158236 #32	ENSGT00940000154428.b #31	ENSGT00940000154428.a #34	ENSGT00530000063946.b #36	ENSGT00940000157012 #37	ENSGT00940000161252	ENSGT00950000183142.a.b.a.a	ENSGT00940000160501	ENSGT00940000155634
Marmotini	ANCESTRAL SPECIES	11	ENSGT00900000143690	ENSGT00390000004803 #9	ENSGT00950000183032.B.b.b #10	ENSGT00940000161275 #11	ENSGT01100000263517.b.d.m.a.a.a.a.d.b	ENSGT01100000263517.b.d.m.a.a.a.a.c	ENSGT00950000182985.b.a #13	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337 #19	ENSGT00530000064023.b ##20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #24	ENSGT00390000011642 #25	ENSGT00950000183154.a #26	ENSGT00530000063692.b #28	ENSGT00940000155683 #29	ENSGT00940000155393.d #30	ENSGT00940000158236 #32	ENSGT00940000154428.b #31	ENSGT00940000154428.a #34	ENSGT00530000063946.b #36	ENSGT00940000157012 #37	ENSGT00950000183142.a.b.a.a	ENSGT00940000161252	ENSGT00940000160501	ENSGT00940000155634
Marmotini_b	ANCESTRAL SPECIES	56	ENSGT00940000157838.c.c	ENSGT00940000157684 #8	ENSGT00390000004803 #9	ENSGT00950000183032.B.b.b #10	ENSGT00940000161275 #11	ENSGT01100000263517.b.d.m.a.a.a.a.c	ENSGT00950000182985.b.a #13	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337 #19	ENSGT00530000064023.b ##20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #24	ENSGT00390000011642 #25	ENSGT00950000183154.a #26	ENSGT00530000063692.b #28	ENSGT00940000155683 #29	ENSGT00940000155393.d #30	ENSGT00940000158236 #32	ENSGT00940000154428.b #31	ENSGT00940000154428.a #34	ENSGT00530000063946.b #36	ENSGT00940000157012 #37	ENSGT00950000183142.a.b.a.a	ENSGT00940000161252	ENSGT00940000160501	ENSGT00940000155634
Squirrel	MODERN SPECIES	89	LATS1 (ENSSTOG00000013443) #8	NUP43 (ENSSTOG00000013449) #9	PCMT1 (ENSSTOG00000024407) #10	LRP11 (ENSSTOG00000000512) #11	ENSSTOG00000001385	ENSSTOG00000029925	PPP1R14C (ENSSTOG00000002019) #13	IYD (ENSSTOG00000002022) #14	PLEKHG1 (ENSSTOG00000010912) #15	MTHFD1L (ENSSTOG00000010921) #16	AKAP12 (ENSSTOG00000029201) #17	ZBTB2 (ENSSTOG00000021611) #18	RMND1 (ENSSTOG00000013141) #19	ARMT1 (ENSSTOG00000013153) ##20	CCDC170 (ENSSTOG00000013161) #21	ESR1 (ENSSTOG00000006748) #22	ENSSTOG00000030302 #24	ENSSTOG00000006796	ENSSTOG00000034176 #24	MYCT1 (ENSSTOG00000010644) #25	VIP (ENSSTOG00000007656) #26	FBXO5 (ENSSTOG00000029069) #28	MTRF1L (ENSSTOG00000009980) #29	RGS17 (ENSSTOG00000009988) #30	OPRM1 (ENSSTOG00000000418) #32	IPCEF1 (ENSSTOG00000000419) #31	CNKSR3 (ENSSTOG00000029212) #34	ENSSTOG00000025472	ENSSTOG00000029860	SCAF8 (ENSSTOG00000026043) #36	TIAM2 (ENSSTOG00000000784) #37
Arctic ground squirrel	MODERN SPECIES	219							ENSUPAG00010013564 #13	IYD (ENSUPAG00010013543) #14	PLEKHG1 (ENSUPAG00010013492) #15	MTHFD1L (ENSUPAG00010013390) #16	AKAP12 (ENSUPAG00010013348) #17	ZBTB2 (ENSUPAG00010013345) #18	RMND1 (ENSUPAG00010013328) #19	ARMT1 (ENSUPAG00010013297) ##20	CCDC170 (ENSUPAG00010013267) #21	ESR1 (ENSUPAG00010013233) #22	SYNE1 (ENSUPAG00010012988) #24	MYCT1 (ENSUPAG00010012980) #25	VIP (ENSUPAG00010012967) #26	FBXO5 (ENSUPAG00010012958) #28	MTRF1L (ENSUPAG00010012945) #29	RGS17 (ENSUPAG00010012932) #30
Alpin marmot	MODERN SPECIES	2	LATS1 (ENSMMMG00000002763) #8	ENSMMMG00000002801	NUP43 (ENSMMMG00000002812) #9	PCMT1 (ENSMMMG00000002841) #10	ENSMMMG00000002884	ENSMMMG00000002939	ENSMMMG00000002962	IYD (ENSMMMG00000002984) #14	PLEKHG1 (ENSMMMG00000003011) #15	MTHFD1L (ENSMMMG00000003062) #16	AKAP12 (ENSMMMG00000003251) #17	ZBTB2 (ENSMMMG00000003286) #18	RMND1 (ENSMMMG00000003297) #19	ARMT1 (ENSMMMG00000003333) ##20	CCDC170 (ENSMMMG00000003378) #21	ESR1 (ENSMMMG00000003430) #22	ENSMMMG00000003497 #24	ENSMMMG00000003544 #24	ENSMMMG00000003589	ENSMMMG00000003653 #24	MYCT1 (ENSMMMG00000003699) #25	VIP (ENSMMMG00000003724) #26	FBXO5 (ENSMMMG00000003740) #28	MTRF1L (ENSMMMG00000003749) #29	RGS17 (ENSMMMG00000003762) #30	ENSMMMG00000003794	OPRM1 (ENSMMMG00000003833) #32	IPCEF1 (ENSMMMG00000003986) #31	CNKSR3 (ENSMMMG00000004049) #34	ENSMMMG00000004079	SCAF8 (ENSMMMG00000004108) #36
Eurasian red squirrel	MODERN SPECIES	16	ENSSVLG00005013084	LRP11 (ENSSVLG00005012935) #11	ENSSVLG00005012789	ENSSVLG00005012647	ENSSVLG00005012613	ENSSVLG00005012559	PPP1R14C (ENSSVLG00005012500) #13	IYD (ENSSVLG00005012284) #14	PLEKHG1 (ENSSVLG00005012201) #15	MTHFD1L (ENSSVLG00005012073) #16	AKAP12 (ENSSVLG00005012004) #17	ZBTB2 (ENSSVLG00005011964) #18	RMND1 (ENSSVLG00005011890) #19	ARMT1 (ENSSVLG00005011814) ##20	CCDC170 (ENSSVLG00005011680) #21	ESR1 (ENSSVLG00005011518) #22	ENSSVLG00005011101 #24	ENSSVLG00005010970 #24	ENSSVLG00005010938	ENSSVLG00005021418 #24	MYCT1 (ENSSVLG00005021349) #25	VIP (ENSSVLG00005021260) #26	ENSSVLG00005021174	FBXO5 (ENSSVLG00005021108) #28	ENSSVLG00005020917 #29	RGS17 (ENSSVLG00005020849) #30	OPRM1 (ENSSVLG00005020650) #32	IPCEF1 (ENSSVLG00005020412) #31	CNKSR3 (ENSSVLG00005020289) #34	SCAF8 (ENSSVLG00005019879) #36	TIAM2 (ENSSVLG00005019741) #37
Hystricomorpha	ANCESTRAL SPECIES	53	ENSGT00940000156638 #7	ENSGT00940000157684 #8	ENSGT00390000004803 #9	ENSGT00950000183032.B.b.b #10	ENSGT00940000161275 #11	ENSGT01100000263517.b.d.m.a.a.a.a.d.b	ENSGT00950000182985.b.a #13	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337 #19	ENSGT00530000064023.b ##20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b.dc #24	ENSGT00390000011642 #25	ENSGT00950000183154.a #26	ENSGT00530000063692.b #28	ENSGT00940000155683 #29	ENSGT00440000039314.a.e.a.b	ENSGT00940000155393.d #30	ENSGT00940000158236 #32	ENSGT00940000154428.b #31	ENSGT00940000154428.a #34	ENSGT00530000063946.b #36	ENSGT00940000157012 #37	ENSGT00940000161252	ENSGT00950000183142.a.b.a.a	ENSGT00940000160501
Hystricomorpha_a	ANCESTRAL SPECIES	30	ENSGT00940000156638 #7	ENSGT00940000157684 #8	ENSGT00390000004803 #9	ENSGT00950000183032.B.b.b #10	ENSGT00940000161275 #11	ENSGT01100000263517.b.d.m.a.a.a.a.d.b	ENSGT00950000182985.b.a #13	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337 #19	ENSGT00530000064023.b ##20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b.dc #24	ENSGT00390000011642 #25	ENSGT00950000183154.a #26	ENSGT00530000063692.b #28	ENSGT00940000155683 #29	ENSGT00440000039314.a.e.a.b	ENSGT00940000155393.d #30	ENSGT00940000158236 #32	ENSGT00940000154428.b #31	ENSGT00940000154428.a #34	ENSGT00530000063946.b #36	ENSGT00940000157012 #37	ENSGT00950000183142.a.b.a.a	ENSGT00940000161252	ENSGT00940000160501
Guinea pig	MODERN SPECIES	41	ARHGAP18 (ENSCPOG00000003798)	LAMA2 (ENSCPOG00000014253)	PTPRK (ENSCPOG00000011053)	THEMIS (ENSCPOG00000008519)	C6orf58 (ENSCPOG00000012978)	ENSCPOG00000035238	KIAA0408 (ENSCPOG00000020737)	ENSCPOG00000035414	PLEKHG1 (ENSCPOG00000010045) #15	MTHFD1L (ENSCPOG00000010056) #16	AKAP12 (ENSCPOG00000005547) #17	ZBTB2 (ENSCPOG00000034799) #18	ENSCPOG00000005849	ARMT1 (ENSCPOG00000040489) ##20	CCDC170 (ENSCPOG00000008222) #21	ESR1 (ENSCPOG00000008317) #22	ENSCPOG00000039266 #24	ENSCPOG00000008325	ENSCPOG00000032322 #24	MYCT1 (ENSCPOG00000036928) #25	VIP (ENSCPOG00000002991) #26	FBXO5 (ENSCPOG00000007680) #28	RGS17 (ENSCPOG00000003312) #30	OPRM1 (ENSCPOG00000008135) #32	IPCEF1 (ENSCPOG00000003418) #31	CNKSR3 (ENSCPOG00000039022) #34	ENSCPOG00000022216 #36	TIAM2 (ENSCPOG00000009654) #37	TFB1M (ENSCPOG00000030422)	CLDN20 (ENSCPOG00000031831)	NOX3 (ENSCPOG00000001003)
Hystricomorpha_b	ANCESTRAL SPECIES	29	ENSGT00390000008373	ENSGT00940000156638 #7	ENSGT00940000157684 #8	ENSGT00390000004803 #9	ENSGT00950000183032.B.b.b #10	ENSGT00940000161275 #11	ENSGT00950000182985.b.a #13	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337 #19	ENSGT00530000064023.b ##20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b.dc #24	ENSGT00390000011642 #25	ENSGT00950000183154.a #26	ENSGT00530000063692.b #28	ENSGT00940000155683 #29	ENSGT00440000039314.a.e.a.b	ENSGT00940000155393.d #30	ENSGT00940000158236 #32	ENSGT00940000154428.b #31	ENSGT00940000154428.a #34	ENSGT00530000063946.b #36	ENSGT00940000157012 #37	ENSGT00950000183142.a.b.a.a	ENSGT00940000160501	ENSGT00940000155634
Long-tailed chinchilla	MODERN SPECIES	146	GINM1 (ENSCLAG00000003584)	KATNA1 (ENSCLAG00000003505) #7	LATS1 (ENSCLAG00000003449) #8	NUP43 (ENSCLAG00000003394) #9	PCMT1 (ENSCLAG00000003224) #10	ENSCLAG00000003173 #11	ENSCLAG00000002777	IYD (ENSCLAG00000002712) #14	PLEKHG1 (ENSCLAG00000004103) #15	MTHFD1L (ENSCLAG00000003603) #16	AKAP12 (ENSCLAG00000003496) #17	ZBTB2 (ENSCLAG00000003435) #18	ENSCLAG00000003248	ARMT1 (ENSCLAG00000003161) ##20	CCDC170 (ENSCLAG00000003105) #21	ESR1 (ENSCLAG00000003026) #22	ENSCLAG00000002772 #24	ENSCLAG00000002568	ENSCLAG00000002479 #24	MYCT1 (ENSCLAG00000004202) #25	VIP (ENSCLAG00000004151) #26	ENSCLAG00000004035	FBXO5 (ENSCLAG00000003927) #28	ENSCLAG00000003820	MTRF1L (ENSCLAG00000003779) #29	RGS17 (ENSCLAG00000003266) #30	ENSCLAG00000003114	OPRM1 (ENSCLAG00000003007) #32	IPCEF1 (ENSCLAG00000005711) #31	CNKSR3 (ENSCLAG00000005496) #34	SCAF8 (ENSCLAG00000004910) #36
Degu	MODERN SPECIES	287			PPP1R14C (ENSODEG00000001211) #13	IYD (ENSODEG00000001311) #14	ENSODEG00000018708	PLEKHG1 (ENSODEG00000001446) #15	MTHFD1L (ENSODEG00000001602) #16	ENSODEG00000018687	ZBTB2 (ENSODEG00000001142) #18	RMND1 (ENSODEG00000001174) #19	ENSODEG00000001262 ##20	ENSODEG00000001273 ##20	ENSODEG00000001305	CCDC170 (ENSODEG00000000921) #21	ENSODEG00000000997	ESR1 (ENSODEG00000001036) #22	SYNE1 (ENSODEG00000001363) #24	MYCT1 (ENSODEG00000001986) #25	VIP (ENSODEG00000002006) #26
Naked mole-rat female	MODERN SPECIES		ENSHGLG00000039077	ENSHGLG00000012691	ENSHGLG00000012404 #13	ENSHGLG00000036728	ENSHGLG00000012265 #14	ENSHGLG00000046296 #15	ENSHGLG00000003082	MTHFD1L (ENSHGLG00000010567) #16	AKAP12 (ENSHGLG00000008686) #17	ZBTB2 (ENSHGLG00000041496) #18	RMND1 (ENSHGLG00000006256) #19	ARMT1 (ENSHGLG00000046933) ##20	CCDC170 (ENSHGLG00000002356) #21	ENSHGLG00000046338	ENSHGLG00000016358	ESR1 (ENSHGLG00000001873) #22	ENSHGLG00000005683 #24	ENSHGLG00000041227	ENSHGLG00000047622 #24	ENSHGLG00000004180 #24	MYCT1 (ENSHGLG00000003966) #25	VIP (ENSHGLG00000003764) #26	ENSHGLG00000003666	FBXO5 (ENSHGLG00000003460) #28	ENSHGLG00000003375	ENSHGLG00000003207 #29	RGS17 (ENSHGLG00000007180) #30	ENSHGLG00000033230	ENSHGLG00000006115	Oprm1 (ENSHGLG00000005417) #32	IPCEF1 (ENSHGLG00000004122) #31
Lagomorpha	ANCESTRAL SPECIES	64							ENSGT00950000182985.b.a #13	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337 #19	ENSGT00530000064023.b ##20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #24	ENSGT00390000011642 #25	ENSGT00950000183154.a #26	ENSGT00530000063692.b #28	ENSGT00940000155683 #29	ENSGT00940000155393.d #30	ENSGT00940000158236 #32	ENSGT00940000154428.b #31	ENSGT00940000154428.a #34	ENSGT00530000063946.b #36	ENSGT00940000157012 #37	ENSGT00950000183142.a.b.a.a	ENSGT00940000161252	ENSGT00940000160501	ENSGT00940000155634
Rabbit	MODERN SPECIES	3	ENSOCUG00000031631	ENSOCUG00000023412	SASH1 (ENSOCUG00000013851)	ENSOCUG00000027879	ENSOCUG00000013406	IYD (ENSOCUG00000013408) #14	PLEKHG1 (ENSOCUG00000016898) #15	MTHFD1L (ENSOCUG00000002781) #16	AKAP12 (ENSOCUG00000002673) #17	ZBTB2 (ENSOCUG00000022931) #18	RMND1 (ENSOCUG00000002509) #19	ARMT1 (ENSOCUG00000002519) ##20	ENSOCUG00000036064	CCDC170 (ENSOCUG00000013530) #21	ENSOCUG00000022327	ESR1 (ENSOCUG00000004829) #22	SYNE1 (ENSOCUG00000023878) #24	ENSOCUG00000038464	MYCT1 (ENSOCUG00000017753) #25	VIP (ENSOCUG00000000513) #26	FBXO5 (ENSOCUG00000000061) #28	ENSOCUG00000000063 #29	RGS17 (ENSOCUG00000021054) #30	OPRM1 (ENSOCUG00000016025) #32	IPCEF1 (ENSOCUG00000016038) #31	ENSOCUG00000037750	CNKSR3 (ENSOCUG00000009042) #34	SCAF8 (ENSOCUG00000026063) #36	ENSOCUG00000012137 #37	TFB1M (ENSOCUG00000012154)	ENSOCUG00000036620
Pika	MODERN SPECIES	992																ESR1 (ENSOPRG00000012663) #22	SYNE1 (ENSOPRG00000012680) #24	MYCT1 (ENSOPRG00000012840) #25