Gnathostomata	ANCESTRAL SPECIES	265					ENSGT00950000183032.B.b.b #11	ENSGT00940000161275 #12	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023 #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22
Euteleostomi	ANCESTRAL SPECIES	62	ENSGT00940000156638 #8	ENSGT00940000157684 #9	ENSGT00390000004803 #10	ENSGT00950000183032.B.b.b #11	ENSGT00940000165711	ENSGT00940000161275 #12	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023 #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000176900	ENSGT00940000154481.a.b #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000158236 #34	ENSGT00390000013215	ENSGT00940000161511	ENSGT00390000002789	ENSGT00940000157628
Sarcopterygii	ANCESTRAL SPECIES	99	ENSGT00940000156638 #8	ENSGT00940000157684 #9	ENSGT00390000004803 #10	ENSGT00950000183032.B.b.b #11	ENSGT00940000165711	ENSGT00940000161275 #12	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023 #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000176900	ENSGT00940000154481.a.b #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000158236 #34
Tetrapoda	ANCESTRAL SPECIES	95	ENSGT00390000008373 #7	ENSGT00940000156638 #8	ENSGT00940000157684 #9	ENSGT00390000004803 #10	ENSGT00950000183032.B.b.b #11	ENSGT00940000161275 #12	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023 #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000158236 #34
Amniota	ANCESTRAL SPECIES	1	ENSGT00390000008373 #7	ENSGT00940000156638 #8	ENSGT00940000157684 #9	ENSGT00390000004803 #10	ENSGT00950000183032.B.b.b #11	ENSGT00940000161275 #12	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023 #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000163429.A	ENSGT00940000163429.D	ENSGT00940000154428 #35	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00940000161252	ENSGT00950000183142.a.b.a.a	ENSGT00940000160501
Mammalia	ANCESTRAL SPECIES	2	ENSGT00390000008373 #7	ENSGT00940000156638 #8	ENSGT00940000157684 #9	ENSGT00390000004803 #10	ENSGT00950000183032.B.b.b #11	ENSGT00940000161275 #12	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023 #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000163429.A	ENSGT00940000154428.a #36	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00950000183142.a.b.a.a	ENSGT00940000161252	ENSGT00940000160501	ENSGT00940000155634
Theria	ANCESTRAL SPECIES	4	ENSGT00390000008373 #7	ENSGT00940000156638 #8	ENSGT00940000157684 #9	ENSGT00390000004803 #10	ENSGT00950000183032.B.b.b #11	ENSGT00940000161275 #12	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023 #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000154428.b #35	ENSGT00940000154428.a #36	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00950000183142.a.b.a.a	ENSGT00940000161252	ENSGT00940000160501	ENSGT00940000155634
Eutheria	ANCESTRAL SPECIES	9	ENSGT00940000156638 #8	ENSGT00940000157684 #9	ENSGT00390000004803 #10	ENSGT00950000183032.B.b.b #11	ENSGT00940000161275 #12	ENSGT01100000263517.b.d.m.a.a.a.a.d	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023.b #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000154428.b #35	ENSGT00940000154428.a #36	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00950000183142.a.b.a.a	ENSGT00940000161252	ENSGT00940000160501	ENSGT00940000155634
Boreoeutheria	ANCESTRAL SPECIES	7	ENSGT00900000143690	ENSGT00390000004803 #10	ENSGT00950000183032.B.b.b #11	ENSGT00940000161275 #12	ENSGT01100000263517.b.d.m.a.a.a.a.c	ENSGT01100000263517.b.d.m.a.a.a.a.d.b	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023.b #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000154428.b #35	ENSGT00940000154428.a #36	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00950000183142.a.b.a.a	ENSGT00940000161252	ENSGT00940000160501	ENSGT00940000155634
Euarchontoglires	ANCESTRAL SPECIES	7	ENSGT00900000143690	ENSGT00390000004803 #10	ENSGT00950000183032.B.b.b #11	ENSGT00940000161275 #12	ENSGT01100000263517.b.d.m.a.a.a.a.c	ENSGT01100000263517.b.d.m.a.a.a.a.d.b	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023.b #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000154428.b #35	ENSGT00940000154428.a #36	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00950000183142.a.b.a.a	ENSGT00940000161252	ENSGT00940000160501	ENSGT00940000155634
Euarchontoglires_A	ANCESTRAL SPECIES	6	ENSGT00900000143690	ENSGT00390000004803 #10	ENSGT00950000183032.B.b.b #11	ENSGT00940000161275 #12	ENSGT01100000263517.b.d.m.a.a.a.a.c	ENSGT01100000263517.b.d.m.a.a.a.a.d.b	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023.b #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000154428.b #35	ENSGT00940000154428.a #36	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00950000183142.a.b.a.a	ENSGT00940000161252	ENSGT00940000160501	ENSGT00940000155634
Glires	ANCESTRAL SPECIES	5	ENSGT00900000143690	ENSGT00390000004803 #10	ENSGT00950000183032.B.b.b #11	ENSGT00940000161275 #12	ENSGT01100000263517.b.d.m.a.a.a.a.c	ENSGT01100000263517.b.d.m.a.a.a.a.d.b	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023.b #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000154428.b #35	ENSGT00940000154428.a #36	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00950000183142.a.b.a.a	ENSGT00940000161252	ENSGT00940000160501	ENSGT00940000155634
Rodentia	ANCESTRAL SPECIES	6	ENSGT00900000143690	ENSGT00390000004803 #10	ENSGT00950000183032.B.b.b #11	ENSGT00940000161275 #12	ENSGT01100000263517.b.d.m.a.a.a.a.c	ENSGT01100000263517.b.d.m.a.a.a.a.d.b	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023.b #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000154428.b #35	ENSGT00940000154428.a #36	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00950000183142.a.b.a.a	ENSGT00940000161252	ENSGT00940000160501	ENSGT00940000155634
Rodentia_A	ANCESTRAL SPECIES	8	ENSGT00900000143690	ENSGT00390000004803 #10	ENSGT00950000183032.B.b.b #11	ENSGT00940000161275 #12	ENSGT01100000263517.b.d.m.a.a.a.a.c	ENSGT01100000263517.b.d.m.a.a.a.a.d.b	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023.b #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000154428.b #35	ENSGT00940000154428.a #36	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00940000161252	ENSGT00950000183142.a.b.a.a	ENSGT00940000160501	ENSGT00940000155634
Hystricomorpha	ANCESTRAL SPECIES	53	ENSGT00940000156638 #8	ENSGT00940000157684 #9	ENSGT00390000004803 #10	ENSGT00950000183032.B.b.b #11	ENSGT00940000161275 #12	ENSGT01100000263517.b.d.m.a.a.a.a.d.b	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023.b #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b.dc #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00440000039314.a.e.a.b #30	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000154428.b #35	ENSGT00940000154428.a #36	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00940000161252	ENSGT00950000183142.a.b.a.a	ENSGT00940000160501
Hystricomorpha_a	ANCESTRAL SPECIES	30	ENSGT00940000156638 #8	ENSGT00940000157684 #9	ENSGT00390000004803 #10	ENSGT00950000183032.B.b.b #11	ENSGT00940000161275 #12	ENSGT01100000263517.b.d.m.a.a.a.a.d.b	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023.b #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b.dc #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00440000039314.a.e.a.b #30	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000154428.b #35	ENSGT00940000154428.a #36	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00950000183142.a.b.a.a	ENSGT00940000161252	ENSGT00940000160501
Hystricomorpha_b	ANCESTRAL SPECIES	29	ENSGT00390000008373 #7	ENSGT00940000156638 #8	ENSGT00940000157684 #9	ENSGT00390000004803 #10	ENSGT00950000183032.B.b.b #11	ENSGT00940000161275 #12	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023.b #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b.dc #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00440000039314.a.e.a.b #30	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000154428.b #35	ENSGT00940000154428.a #36	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00950000183142.a.b.a.a	ENSGT00940000160501	ENSGT00940000155634
Long-tailed chinchilla	MODERN SPECIES	146	GINM1 (ENSCLAG00000003584) #7	KATNA1 (ENSCLAG00000003505) #8	LATS1 (ENSCLAG00000003449) #9	NUP43 (ENSCLAG00000003394) #10	PCMT1 (ENSCLAG00000003224) #11	ENSCLAG00000003173 #12	ENSCLAG00000002777 #13	IYD (ENSCLAG00000002712) #14	PLEKHG1 (ENSCLAG00000004103) #15	MTHFD1L (ENSCLAG00000003603) #16	AKAP12 (ENSCLAG00000003496) #17	ZBTB2 (ENSCLAG00000003435) #18	ENSCLAG00000003248 #19	ARMT1 (ENSCLAG00000003161) #20	CCDC170 (ENSCLAG00000003105) #21	ESR1 (ENSCLAG00000003026) #22	ENSCLAG00000002772 #23	ENSCLAG00000002568 #24	ENSCLAG00000002479 #25	MYCT1 (ENSCLAG00000004202) #26	VIP (ENSCLAG00000004151) #27	ENSCLAG00000004035 #28	FBXO5 (ENSCLAG00000003927) #29	ENSCLAG00000003820 #30	MTRF1L (ENSCLAG00000003779) #31	RGS17 (ENSCLAG00000003266) #32	ENSCLAG00000003114 #33	OPRM1 (ENSCLAG00000003007) #34	IPCEF1 (ENSCLAG00000005711) #35	CNKSR3 (ENSCLAG00000005496) #36	SCAF8 (ENSCLAG00000004910) #37
Degu	MODERN SPECIES	287			PPP1R14C (ENSODEG00000001211)	IYD (ENSODEG00000001311) #14	ENSODEG00000018708	PLEKHG1 (ENSODEG00000001446) #15	MTHFD1L (ENSODEG00000001602) #16	ENSODEG00000018687	ZBTB2 (ENSODEG00000001142) #18	RMND1 (ENSODEG00000001174)	ENSODEG00000001262 #20	ENSODEG00000001273 #20	ENSODEG00000001305	CCDC170 (ENSODEG00000000921) #21	ENSODEG00000000997	ESR1 (ENSODEG00000001036) #22	SYNE1 (ENSODEG00000001363) #23	MYCT1 (ENSODEG00000001986) #26	VIP (ENSODEG00000002006) #27
Guinea pig	MODERN SPECIES	41	ARHGAP18 (ENSCPOG00000003798)	LAMA2 (ENSCPOG00000014253)	PTPRK (ENSCPOG00000011053)	THEMIS (ENSCPOG00000008519)	C6orf58 (ENSCPOG00000012978)	ENSCPOG00000035238	KIAA0408 (ENSCPOG00000020737)	ENSCPOG00000035414	PLEKHG1 (ENSCPOG00000010045) #15	MTHFD1L (ENSCPOG00000010056) #16	AKAP12 (ENSCPOG00000005547) #17	ZBTB2 (ENSCPOG00000034799) #18	ENSCPOG00000005849 #19	ARMT1 (ENSCPOG00000040489) #20	CCDC170 (ENSCPOG00000008222) #21	ESR1 (ENSCPOG00000008317) #22	ENSCPOG00000039266 #23	ENSCPOG00000008325 #24	ENSCPOG00000032322 #23	MYCT1 (ENSCPOG00000036928) #26	VIP (ENSCPOG00000002991) #27	FBXO5 (ENSCPOG00000007680) #29	RGS17 (ENSCPOG00000003312) #32	OPRM1 (ENSCPOG00000008135) #34	IPCEF1 (ENSCPOG00000003418) #35	CNKSR3 (ENSCPOG00000039022) #36	ENSCPOG00000022216 #37	TIAM2 (ENSCPOG00000009654)	TFB1M (ENSCPOG00000030422)	CLDN20 (ENSCPOG00000031831)	NOX3 (ENSCPOG00000001003)
Naked mole-rat female	MODERN SPECIES		ENSHGLG00000039077	ENSHGLG00000012691	ENSHGLG00000012404	ENSHGLG00000036728	ENSHGLG00000012265 #14	ENSHGLG00000046296 #15	ENSHGLG00000003082	MTHFD1L (ENSHGLG00000010567) #16	AKAP12 (ENSHGLG00000008686) #17	ZBTB2 (ENSHGLG00000041496) #18	RMND1 (ENSHGLG00000006256)	ARMT1 (ENSHGLG00000046933) #20	CCDC170 (ENSHGLG00000002356) #21	ENSHGLG00000046338	ENSHGLG00000016358	ESR1 (ENSHGLG00000001873) #22	ENSHGLG00000005683 ##23	ENSHGLG00000041227	ENSHGLG00000047622 #23	ENSHGLG00000004180 #23	MYCT1 (ENSHGLG00000003966) #26	VIP (ENSHGLG00000003764) #27	ENSHGLG00000003666	FBXO5 (ENSHGLG00000003460) #29	ENSHGLG00000003375 #30	ENSHGLG00000003207 #31	RGS17 (ENSHGLG00000007180) #32	ENSHGLG00000033230	ENSHGLG00000006115	Oprm1 (ENSHGLG00000005417) #34	IPCEF1 (ENSHGLG00000004122) #35
Sciuridae	ANCESTRAL SPECIES	1	ENSGT00900000143690	ENSGT00390000004803 #10	ENSGT00950000183032.B.b.b #11	ENSGT00940000161275 #12	ENSGT01100000263517.b.d.m.a.a.a.a.c	ENSGT01100000263517.b.d.m.a.a.a.a.d.b	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023.b #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000154428.b #35	ENSGT00940000154428.a #36	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00940000161252	ENSGT00950000183142.a.b.a.a	ENSGT00940000160501	ENSGT00940000155634
Marmotini	ANCESTRAL SPECIES	11	ENSGT00900000143690	ENSGT00390000004803 #10	ENSGT00950000183032.B.b.b #11	ENSGT00940000161275 #12	ENSGT01100000263517.b.d.m.a.a.a.a.d.b	ENSGT01100000263517.b.d.m.a.a.a.a.c	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023.b #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000154428.b #35	ENSGT00940000154428.a #36	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00950000183142.a.b.a.a	ENSGT00940000161252	ENSGT00940000160501	ENSGT00940000155634
Marmotini_b	ANCESTRAL SPECIES	56	ENSGT00940000157838.c.c	ENSGT00940000157684 #9	ENSGT00390000004803 #10	ENSGT00950000183032.B.b.b #11	ENSGT00940000161275 #12	ENSGT01100000263517.b.d.m.a.a.a.a.c	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023.b #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000154428.b #35	ENSGT00940000154428.a #36	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00950000183142.a.b.a.a	ENSGT00940000161252	ENSGT00940000160501	ENSGT00940000155634
Squirrel	MODERN SPECIES	89	LATS1 (ENSSTOG00000013443) #9	NUP43 (ENSSTOG00000013449) #10	PCMT1 (ENSSTOG00000024407) #11	LRP11 (ENSSTOG00000000512) #12	ENSSTOG00000001385	ENSSTOG00000029925	PPP1R14C (ENSSTOG00000002019)	IYD (ENSSTOG00000002022) #14	PLEKHG1 (ENSSTOG00000010912) #15	MTHFD1L (ENSSTOG00000010921) #16	AKAP12 (ENSSTOG00000029201) #17	ZBTB2 (ENSSTOG00000021611) #18	RMND1 (ENSSTOG00000013141)	ARMT1 (ENSSTOG00000013153) #20	CCDC170 (ENSSTOG00000013161) #21	ESR1 (ENSSTOG00000006748) #22	ENSSTOG00000030302 #23	ENSSTOG00000006796 #24	ENSSTOG00000034176 #23	MYCT1 (ENSSTOG00000010644) #26	VIP (ENSSTOG00000007656) #27	FBXO5 (ENSSTOG00000029069) #29	MTRF1L (ENSSTOG00000009980) #31	RGS17 (ENSSTOG00000009988) #32	OPRM1 (ENSSTOG00000000418) #34	IPCEF1 (ENSSTOG00000000419) #35	CNKSR3 (ENSSTOG00000029212) #36	ENSSTOG00000025472	ENSSTOG00000029860	SCAF8 (ENSSTOG00000026043) #37	TIAM2 (ENSSTOG00000000784)
Arctic ground squirrel	MODERN SPECIES	219							ENSUPAG00010013564	IYD (ENSUPAG00010013543) #14	PLEKHG1 (ENSUPAG00010013492) #15	MTHFD1L (ENSUPAG00010013390) #16	AKAP12 (ENSUPAG00010013348) #17	ZBTB2 (ENSUPAG00010013345) #18	RMND1 (ENSUPAG00010013328)	ARMT1 (ENSUPAG00010013297) #20	CCDC170 (ENSUPAG00010013267) #21	ESR1 (ENSUPAG00010013233) #22	SYNE1 (ENSUPAG00010012988) #23	MYCT1 (ENSUPAG00010012980) #26	VIP (ENSUPAG00010012967) #27	FBXO5 (ENSUPAG00010012958) #29	MTRF1L (ENSUPAG00010012945) #31	RGS17 (ENSUPAG00010012932) #32
Alpin marmot	MODERN SPECIES	2	LATS1 (ENSMMMG00000002763) #9	ENSMMMG00000002801	NUP43 (ENSMMMG00000002812) #10	PCMT1 (ENSMMMG00000002841) #11	ENSMMMG00000002884	ENSMMMG00000002939	ENSMMMG00000002962	IYD (ENSMMMG00000002984) #14	PLEKHG1 (ENSMMMG00000003011) #15	MTHFD1L (ENSMMMG00000003062) #16	AKAP12 (ENSMMMG00000003251) #17	ZBTB2 (ENSMMMG00000003286) #18	RMND1 (ENSMMMG00000003297)	ARMT1 (ENSMMMG00000003333) #20	CCDC170 (ENSMMMG00000003378) #21	ESR1 (ENSMMMG00000003430) #22	ENSMMMG00000003497 #23	ENSMMMG00000003544 #23	ENSMMMG00000003589 #24	ENSMMMG00000003653 #23	MYCT1 (ENSMMMG00000003699) #26	VIP (ENSMMMG00000003724) #27	FBXO5 (ENSMMMG00000003740) #29	MTRF1L (ENSMMMG00000003749) #31	RGS17 (ENSMMMG00000003762) #32	ENSMMMG00000003794	OPRM1 (ENSMMMG00000003833) #34	IPCEF1 (ENSMMMG00000003986) #35	CNKSR3 (ENSMMMG00000004049) #36	ENSMMMG00000004079	SCAF8 (ENSMMMG00000004108) #37
Eurasian red squirrel	MODERN SPECIES	16	ENSSVLG00005013084	LRP11 (ENSSVLG00005012935) #12	ENSSVLG00005012789	ENSSVLG00005012647	ENSSVLG00005012613	ENSSVLG00005012559	PPP1R14C (ENSSVLG00005012500)	IYD (ENSSVLG00005012284) #14	PLEKHG1 (ENSSVLG00005012201) #15	MTHFD1L (ENSSVLG00005012073) #16	AKAP12 (ENSSVLG00005012004) #17	ZBTB2 (ENSSVLG00005011964) #18	RMND1 (ENSSVLG00005011890)	ARMT1 (ENSSVLG00005011814) #20	CCDC170 (ENSSVLG00005011680) #21	ESR1 (ENSSVLG00005011518) #22	ENSSVLG00005011101 #23	ENSSVLG00005010970 #23	ENSSVLG00005010938 #24	ENSSVLG00005021418 #23	MYCT1 (ENSSVLG00005021349) #26	VIP (ENSSVLG00005021260) #27	ENSSVLG00005021174	FBXO5 (ENSSVLG00005021108) #29	ENSSVLG00005020917 #31	RGS17 (ENSSVLG00005020849) #32	OPRM1 (ENSSVLG00005020650) #34	IPCEF1 (ENSSVLG00005020412) #35	CNKSR3 (ENSSVLG00005020289) #36	SCAF8 (ENSSVLG00005019879) #37	TIAM2 (ENSSVLG00005019741)
Rodentia_B	ANCESTRAL SPECIES	18	ENSGT00390000008373 #7	ENSGT00940000156638 #8	ENSGT00940000157684 #9	ENSGT00390000004803 #10	ENSGT00950000183032.B.b.b #11	ENSGT00940000161275 #12	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023.b #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000154428.b #35	ENSGT00940000154428.a #36	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00950000183142.a.b.a.a	ENSGT00940000161252	ENSGT00940000160501	ENSGT00940000155634
Kangaroo rat	MODERN SPECIES	417	ENSDORG00000025692 #8	ENSDORG00000029134 #8	Lats1 (ENSDORG00000007190) #9	ENSDORG00000002203 #10	Pcmt1 (ENSDORG00000003137) #11	Lrp11 (ENSDORG00000003139) #12	ENSDORG00000023774	Ppp1r14c (ENSDORG00000029153)	Iyd (ENSDORG00000016201) #14	ENSDORG00000029716 #15	Mthfd1l (ENSDORG00000006234) #16	Zbtb2 (ENSDORG00000013305) #18	ENSDORG00000025869	ENSDORG00000000434 #20	Ccdc170 (ENSDORG00000014673) #21	Esr1 (ENSDORG00000010443) #22	Syne1 (ENSDORG00000013226) #23	Myct1 (ENSDORG00000027276) #26	Vip (ENSDORG00000015940) #27	Fbxo5 (ENSDORG00000000495) #29	Mtrf1l (ENSDORG00000010997) #31	Rgs17 (ENSDORG00000011002) #32	Oprm1 (ENSDORG00000002315) #34	Ipcef1 (ENSDORG00000023655) #35	Cnksr3 (ENSDORG00000008824) #36	ENSDORG00000027053	Scaf8 (ENSDORG00000006391) #37	Tiam2 (ENSDORG00000012933)	Tfb1m (ENSDORG00000012938)	Nox3 (ENSDORG00000009803)	Arid1b (ENSDORG00000014985)
Myomorpha	ANCESTRAL SPECIES	21	ENSGT00390000008373 #7	ENSGT00940000156638 #8	ENSGT00940000157684 #9	ENSGT00390000004803 #10	ENSGT00950000183032.B.b.b #11	ENSGT00940000161275 #12	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023.b #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000154428.b #35	ENSGT00940000154428.a #36	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00950000183142.a.b.a.a	ENSGT00940000161252	ENSGT00940000160501	ENSGT00940000155634
Muroidea	ANCESTRAL SPECIES	22	ENSGT00390000008373 #7	ENSGT00940000156638 #8	ENSGT00940000157684 #9	ENSGT00390000004803 #10	ENSGT00950000183032.B.b.b #11	ENSGT00940000161275 #12	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023.b #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000154428.b #35	ENSGT00940000154428.a #36	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00950000183142.a.b.a.a	ENSGT00940000161252	ENSGT00940000160501	ENSGT00940000155634
Muroidea_A	ANCESTRAL SPECIES	11	ENSGT00390000008373 #7	ENSGT00940000156638 #8	ENSGT00940000157684 #9	ENSGT00390000004803 #10	ENSGT00950000183032.B.b.b #11	ENSGT00940000161275 #12	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023.b #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000154428.b #35	ENSGT00940000154428.a #36	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00950000183142.a.b.a.a	ENSGT00940000161252	ENSGT00940000160501	ENSGT00940000155634
Cricetidae	ANCESTRAL SPECIES	11	ENSGT00390000008373 #7	ENSGT00940000156638 #8	ENSGT00940000157684 #9	ENSGT00390000004803 #10	ENSGT00950000183032.B.b.b #11	ENSGT00940000161275 #12	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023.b #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000154428.b #35	ENSGT00940000154428.a #36	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00950000183142.a.b.a.a	ENSGT00940000161252	ENSGT00940000160501	ENSGT00940000155634
Cricetidae_B	ANCESTRAL SPECIES	21	ENSGT00390000008373 #7	ENSGT00940000156638 #8	ENSGT00940000157684 #9	ENSGT00390000004803 #10	ENSGT00950000183032.B.b.b #11	ENSGT00940000161275 #12	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023.b #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000154428.b #35	ENSGT00940000154428.a #36	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00940000161252	ENSGT00950000183142.a.b.a.a	ENSGT00940000160501	ENSGT00940000155634
Northern American deer mouse	MODERN SPECIES	7	ENSPEMG00000027039	ENSPEMG00000025014	ENSPEMG00000028469	ENSPEMG00000029355	ENSPEMG00000031117	Ppp1r14c (ENSPEMG00000026419)	Iyd (ENSPEMG00000009998) #14	Plekhg1 (ENSPEMG00000003381) #15	Mthfd1l (ENSPEMG00000012428) #16	ENSPEMG00000028722 #17	Zbtb2 (ENSPEMG00000028248) #18	Rmnd1 (ENSPEMG00000014544)	Armt1 (ENSPEMG00000027664) #20	Ccdc170 (ENSPEMG00000018858) #21	ENSPEMG00000028412	Esr1 (ENSPEMG00000012747) #22	ENSPEMG00000000704 #23	ENSPEMG00000029017 #23	ENSPEMG00000013933 #24	ENSPEMG00000007014 #23	Myct1 (ENSPEMG00000016041) #26	Vip (ENSPEMG00000007974) #27	ENSPEMG00000005147	Fbxo5 (ENSPEMG00000017534) #29	Mtrf1l (ENSPEMG00000018112) #31	Rgs17 (ENSPEMG00000002088) #32	Oprm1 (ENSPEMG00000013691) #34	Ipcef1 (ENSPEMG00000017460) #35	Cnksr3 (ENSPEMG00000009492) #36	Scaf8 (ENSPEMG00000010531) #37	Tiam2 (ENSPEMG00000019186)
Prairie vole	MODERN SPECIES	358	ENSMOCG00000021945	Grik2 (ENSMOCG00000022205)	Ascc3 (ENSMOCG00000004549)	Sim1 (ENSMOCG00000017754)	ENSMOCG00000008070	Ppp1r14c (ENSMOCG00000002551)	Iyd (ENSMOCG00000012475) #14	Plekhg1 (ENSMOCG00000006027) #15	Mthfd1l (ENSMOCG00000011918) #16	ENSMOCG00000019373 #17	Zbtb2 (ENSMOCG00000018175) #18	Rmnd1 (ENSMOCG00000012373)	Armt1 (ENSMOCG00000008335) #20	Ccdc170 (ENSMOCG00000015340) #21	ENSMOCG00000008666	Esr1 (ENSMOCG00000004623) #22	Syne1 (ENSMOCG00000003007) #23	Myct1 (ENSMOCG00000003327) #26	Vip (ENSMOCG00000000402) #27	Fbxo5 (ENSMOCG00000016622) #29	Mtrf1l (ENSMOCG00000016147) #31	Rgs17 (ENSMOCG00000013891) #32	Oprm1 (ENSMOCG00000009671) #34	Ipcef1 (ENSMOCG00000015115) #35	Cnksr3 (ENSMOCG00000020668) #36	Scaf8 (ENSMOCG00000014950) #37	Tiam2 (ENSMOCG00000019544)	ENSMOCG00000017009	Tfb1m (ENSMOCG00000013879)	Nox3 (ENSMOCG00000002324)	Arid1b (ENSMOCG00000017619)
Cricetinae	ANCESTRAL SPECIES	7	ENSGT00390000008373 #7	ENSGT00940000156638 #8	ENSGT00940000157684 #9	ENSGT00390000004803 #10	ENSGT00950000183032.B.b.b #11	ENSGT00940000161275 #12	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023.b #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00940000165162 #24	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000154428.b #35	ENSGT00940000154428.a #36	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00950000183142.a.b.a.a	ENSGT00940000161252	ENSGT00940000160501
Chinese hamster chok1gshd	MODERN SPECIES	1	Ginm1 (ENSCGRG00001022724) #7	Katna1 (ENSCGRG00001023013) #8	Lats1 (ENSCGRG00001023972) #9	ENSCGRG00001019911 #10	Pcmt1 (ENSCGRG00001009158) #11	Lrp11 (ENSCGRG00001010309) #12	Ppp1r14c (ENSCGRG00001022707)	Iyd (ENSCGRG00001022969) #14	Plekhg1 (ENSCGRG00001023431) #15	Mthfd1l (ENSCGRG00001022372) #16	Akap12 (ENSCGRG00001022879) #17	Zbtb2 (ENSCGRG00001023273) #18	Rmnd1 (ENSCGRG00001018312)	Armt1 (ENSCGRG00001019042) #20	Ccdc170 (ENSCGRG00001019582) #21	Esr1 (ENSCGRG00001024268) #22	ENSCGRG00001024508 #23	ENSCGRG00001016292 #24	ENSCGRG00001017406 #23	Myct1 (ENSCGRG00001007389) #26	Vip (ENSCGRG00001023726) #27	Fbxo5 (ENSCGRG00001024225) #29	Mtrf1l (ENSCGRG00001024662) #31	Rgs17 (ENSCGRG00001008622) #32	ENSCGRG00001007014 #33	Oprm1 (ENSCGRG00001003333) #34	Ipcef1 (ENSCGRG00001002463) #35	Cnksr3 (ENSCGRG00001012107) #36	Scaf8 (ENSCGRG00001020167) #37	Tiam2 (ENSCGRG00001023036)	Tfb1m (ENSCGRG00001022866)
Golden Hamster	MODERN SPECIES	621	ENSMAUG00000016471 #8	ENSMAUG00000012301 #8	Lats1 (ENSMAUG00000020092) #9	Nup43 (ENSMAUG00000018659) #10	Pcmt1 (ENSMAUG00000011320) #11	Lrp11 (ENSMAUG00000014809) #12	Ppp1r14c (ENSMAUG00000019718)	Iyd (ENSMAUG00000013810) #14	ENSMAUG00000011570 #15	Mthfd1l (ENSMAUG00000016191) #16	ENSMAUG00000020409 #17	Zbtb2 (ENSMAUG00000008627) #18	Rmnd1 (ENSMAUG00000011585)	Armt1 (ENSMAUG00000012945) #20	Ccdc170 (ENSMAUG00000008640) #21	Esr1 (ENSMAUG00000006785) #22	ENSMAUG00000014937 #23	ENSMAUG00000012320 #24	ENSMAUG00000019847 #23	Myct1 (ENSMAUG00000014906) #26	Vip (ENSMAUG00000014470) #27	Fbxo5 (ENSMAUG00000000824) #29	Mtrf1l (ENSMAUG00000017702) #31	ENSMAUG00000021559	Oprm1 (ENSMAUG00000016741) #34	Ipcef1 (ENSMAUG00000020692) #35	ENSMAUG00000008972	Cnksr3 (ENSMAUG00000017992) #36	Scaf8 (ENSMAUG00000009513) #37	Tiam2 (ENSMAUG00000016491)	Tfb1m (ENSMAUG00000006705)
Murinae	ANCESTRAL SPECIES	29							ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023.b #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000154428.b #35	ENSGT00940000154428.a #36	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00950000183142.a.b.a.a	ENSGT00940000161252	ENSGT00940000160501	ENSGT00940000155634
Mus	ANCESTRAL SPECIES	15							ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023.b #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000154428.b #35	ENSGT00940000154428.a #36	ENSGT00940000161275 #12	ENSGT00950000183032.B.b.b #11	ENSGT00390000004803 #10	ENSGT00940000157684 #9	ENSGT00940000156638 #8	ENSGT00390000008373 #7
Mus_A	ANCESTRAL SPECIES	11							ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401.a #18	ENSGT00390000013337	ENSGT00530000064023.b #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000154428.b #35	ENSGT00940000154428.a #36	ENSGT00940000161275 #12	ENSGT00950000183032.B.b.b #11	ENSGT00390000004803 #10	ENSGT00940000157684 #9	ENSGT00940000156638 #8	ENSGT00390000008373 #7
Mus_B	ANCESTRAL SPECIES	10					ENSGT00940000169591.d	ENSGT01100000263517.b.d.m.a.a.a.a.c.x	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401.a #18	ENSGT00390000013337	ENSGT00530000064023.b #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000154428.b #35	ENSGT00940000154428.a #36	ENSGT01100000263531.A	ENSGT00940000161275 #12	ENSGT00950000183032.B.b.b #11	ENSGT00390000004803 #10	ENSGT00940000157684 #9	ENSGT00940000156638 #8
Mouse	MODERN SPECIES	1						H60c (ENSMUSG00000091618)	Ppp1r14c (ENSMUSG00000040653)	Iyd (ENSMUSG00000019762) #14	Plekhg1 (ENSMUSG00000040624) #15	Mthfd1l (ENSMUSG00000040675) #16	Akap12 (ENSMUSG00000038587) #17	Zbtb2 (ENSMUSG00000075327) #18	Rmnd1 (ENSMUSG00000019763)	Armt1 (ENSMUSG00000061759) #20	Ccdc170 (ENSMUSG00000019767) #21	Esr1 (ENSMUSG00000019768) #22	Syne1 (ENSMUSG00000096054) #23	Myct1 (ENSMUSG00000046916) #26	Vip (ENSMUSG00000019772) #27	Fbxo5 (ENSMUSG00000019773) #29	Mtrf1l (ENSMUSG00000019774) #31	Rgs17 (ENSMUSG00000019775) #32	Oprm1 (ENSMUSG00000000766) #34	Ipcef1 (ENSMUSG00000064065) #35	Cnksr3 (ENSMUSG00000015202) #36	Ulbp1 (ENSMUSG00000079685)	Lrp11 (ENSMUSG00000019796) #12	Pcmt1 (ENSMUSG00000019795) #11	Nup43 (ENSMUSG00000040034) #10	Lats1 (ENSMUSG00000040021) #9	Katna1 (ENSMUSG00000019794) #8
Mus_C	ANCESTRAL SPECIES	7					ENSGT00940000169591.d	ENSGT01100000263517.b.d.m.a.a.a.a.c.x	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401.a #18	ENSGT00390000013337	ENSGT00530000064023.b #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000154428.b #35	ENSGT00940000154428.a #36	ENSGT01100000263531.A	ENSGT00940000161275 #12	ENSGT00950000183032.B.b.b #11	ENSGT00390000004803 #10	ENSGT00940000157684 #9	ENSGT00940000156638 #8
spretus	MODERN SPECIES	1			MGP_SPRETEiJ_G0015877	MGP_SPRETEiJ_G0015878	MGP_SPRETEiJ_G0015880	MGP_SPRETEiJ_G0015881	Ppp1r14c (MGP_SPRETEiJ_G0015882)	Iyd (MGP_SPRETEiJ_G0015883) #14	Plekhg1 (MGP_SPRETEiJ_G0015884) #15	Mthfd1l (MGP_SPRETEiJ_G0015885) #16	Akap12 (MGP_SPRETEiJ_G0015886) #17	Zbtb2 (MGP_SPRETEiJ_G0015887) #18	Rmnd1 (MGP_SPRETEiJ_G0015888)	Armt1 (MGP_SPRETEiJ_G0015889) #20	Ccdc170 (MGP_SPRETEiJ_G0015890) #21	Esr1 (MGP_SPRETEiJ_G0015891) #22	MGP_SPRETEiJ_G0015893	Myct1 (MGP_SPRETEiJ_G0015895) #26	Vip (MGP_SPRETEiJ_G0015896) #27	Fbxo5 (MGP_SPRETEiJ_G0015897) #29	Mtrf1l (MGP_SPRETEiJ_G0015898) #31	Rgs17 (MGP_SPRETEiJ_G0015899) #32	Oprm1 (MGP_SPRETEiJ_G0015900) #34	Ipcef1 (MGP_SPRETEiJ_G0015901) #35	Cnksr3 (MGP_SPRETEiJ_G0015902) #36	MGP_SPRETEiJ_G0015903	Lrp11 (MGP_SPRETEiJ_G0015904) #12	MGP_SPRETEiJ_G0015905 #11	Nup43 (MGP_SPRETEiJ_G0015906) #10	Lats1 (MGP_SPRETEiJ_G0015907) #9	Katna1 (MGP_SPRETEiJ_G0015908) #8
Steppe mouse	MODERN SPECIES	3173		ENSMSIG00000028950	ENSMSIG00000028953	H60c (ENSMSIG00000028958)	ENSMSIG00000028966	ENSMSIG00000028971 #14	Plekhg1 (ENSMSIG00000028989) #15	Mthfd1l (ENSMSIG00000029009) #16	ENSMSIG00000029049	Akap12 (ENSMSIG00000029068) #17	ENSMSIG00000029085	Zbtb2 (ENSMSIG00000029096) #18	Rmnd1 (ENSMSIG00000029100)	Armt1 (ENSMSIG00000029112) #20	Ccdc170 (ENSMSIG00000029125) #21	Esr1 (ENSMSIG00000029132) #22	Syne1 (ENSMSIG00000029148) #23	Myct1 (ENSMSIG00000029269) #26	Vip (ENSMSIG00000029272) #27
Ryukyu mouse	MODERN SPECIES	1							Ppp1r14c (MGP_CAROLIEiJ_G0015077)	Iyd (MGP_CAROLIEiJ_G0015078) #14	Plekhg1 (MGP_CAROLIEiJ_G0015079) #15	Mthfd1l (MGP_CAROLIEiJ_G0015080) #16	Akap12 (MGP_CAROLIEiJ_G0015081) #17	Zbtb2 (MGP_CAROLIEiJ_G0015082) #18	Rmnd1 (MGP_CAROLIEiJ_G0015083)	Armt1 (MGP_CAROLIEiJ_G0015084) #20	Ccdc170 (MGP_CAROLIEiJ_G0015085) #21	Esr1 (MGP_CAROLIEiJ_G0015086) #22	MGP_CAROLIEiJ_G0015087 #23	MGP_CAROLIEiJ_G0015088	Myct1 (MGP_CAROLIEiJ_G0015089) #26	Vip (MGP_CAROLIEiJ_G0015090) #27	Fbxo5 (MGP_CAROLIEiJ_G0015091) #29	Mtrf1l (MGP_CAROLIEiJ_G0015092) #31	Rgs17 (MGP_CAROLIEiJ_G0015093) #32	Oprm1 (MGP_CAROLIEiJ_G0015094) #34	Ipcef1 (MGP_CAROLIEiJ_G0015095) #35	Cnksr3 (MGP_CAROLIEiJ_G0015096) #36	Lrp11 (MGP_CAROLIEiJ_G0015097) #12	MGP_CAROLIEiJ_G0015098 #11	Nup43 (MGP_CAROLIEiJ_G0015099) #10	Lats1 (MGP_CAROLIEiJ_G0015100) #9	MGP_CAROLIEiJ_G0015101 #8
Shrew mouse	MODERN SPECIES	13	Cbs (MGP_PahariEiJ_G0023690)	U2af1 (MGP_PahariEiJ_G0023691)	Cryaa (MGP_PahariEiJ_G0023692)	Sik1 (MGP_PahariEiJ_G0023693)	MGP_PahariEiJ_G0023694	Rrp1b (MGP_PahariEiJ_G0023695)	Ppp1r14c (MGP_PahariEiJ_G0023696)	Iyd (MGP_PahariEiJ_G0023697) #14	Plekhg1 (MGP_PahariEiJ_G0023698) #15	Mthfd1l (MGP_PahariEiJ_G0023699) #16	Akap12 (MGP_PahariEiJ_G0023700) #17	Zbtb2 (MGP_PahariEiJ_G0023701) #18	MGP_PahariEiJ_G0023702 #19	Armt1 (MGP_PahariEiJ_G0023703) #20	MGP_PahariEiJ_G0023704 #21	Esr1 (MGP_PahariEiJ_G0023705) #22	MGP_PahariEiJ_G0023706 #23	MGP_PahariEiJ_G0023707	Myct1 (MGP_PahariEiJ_G0023708) #26	Vip (MGP_PahariEiJ_G0023709) #27	Fbxo5 (MGP_PahariEiJ_G0023710) #29	Mtrf1l (MGP_PahariEiJ_G0023711) #31	Rgs17 (MGP_PahariEiJ_G0023712) #32	Oprm1 (MGP_PahariEiJ_G0023713) #34	Ipcef1 (MGP_PahariEiJ_G0023714) #35	Cnksr3 (MGP_PahariEiJ_G0023715) #36	Lrp11 (MGP_PahariEiJ_G0023716) #12	Pcmt1 (MGP_PahariEiJ_G0023717) #11	Nup43 (MGP_PahariEiJ_G0023718) #10	Lats1 (MGP_PahariEiJ_G0023719) #9	Katna1 (MGP_PahariEiJ_G0023720) #8
Rat	MODERN SPECIES		ENSRNOG00000063413	ENSRNOG00000067926	ENSRNOG00000069813	ENSRNOG00000067477	ENSRNOG00000070838	AABR07001348.1 (ENSRNOG00000023081)	Ppp1r14c (ENSRNOG00000016368)	Iyd (ENSRNOG00000016286) #14	Plekhg1 (ENSRNOG00000016011) #15	Mthfd1l (ENSRNOG00000019582) #16	Akap12 (ENSRNOG00000019549) #17	Zbtb2 (ENSRNOG00000019544) #18	Rmnd1 (ENSRNOG00000019501)	Armt1 (ENSRNOG00000019489) #20	Ccdc170 (ENSRNOG00000024280) #21	Esr1 (ENSRNOG00000019358) #22	Syne1 (ENSRNOG00000018960) #23	Myct1 (ENSRNOG00000018858) #26	Vip (ENSRNOG00000018808) #27	Fbxo5 (ENSRNOG00000024077) #29	Mtrf1l (ENSRNOG00000018773) #31	Rgs17 (ENSRNOG00000018690) #32	AABR07001408.1 (ENSRNOG00000033265)	ENSRNOG00000070385	Oprm1 (ENSRNOG00000018191) #34	Ipcef1 (ENSRNOG00000018163) #35	Cnksr3 (ENSRNOG00000018052) #36	AABR07001435.1 (ENSRNOG00000004144)	Scaf8 (ENSRNOG00000016919) #37	Tiam2 (ENSRNOG00000016728)	Tfb1m (ENSRNOG00000056223)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1401						Iyd (ENSNGAG00000000377) #14	ENSNGAG00000010901	Plekhg1 (ENSNGAG00000002088) #15	Mthfd1l (ENSNGAG00000014110) #16	Akap12 (ENSNGAG00000001974) #17	Zbtb2 (ENSNGAG00000001004) #18	Rmnd1 (ENSNGAG00000003570)	Armt1 (ENSNGAG00000020620) #20	Ccdc170 (ENSNGAG00000013308) #21	ENSNGAG00000001180	Esr1 (ENSNGAG00000017049) #22	ENSNGAG00000000637 #23
Lesser Egyptian jerboa	DUPLICATION
Lesser Egyptian jerboa	MODERN SPECIES	44	ENSJJAG00000021207 #8	Lats1 (ENSJJAG00000019456) #9	Nup43 (ENSJJAG00000012578) #10	Pcmt1 (ENSJJAG00000023560) #11	Lrp11 (ENSJJAG00000024401) #12	ENSJJAG00000018910	Ppp1r14c (ENSJJAG00000020290)	ENSJJAG00000024322 #14	Plekhg1 (ENSJJAG00000023794) #15	Mthfd1l (ENSJJAG00000014266) #16	Akap12 (ENSJJAG00000021521) #17	Zbtb2 (ENSJJAG00000016308) #18	Rmnd1 (ENSJJAG00000008798)	ENSJJAG00000015720 ##20	ENSJJAG00000011473 #21	Esr1 (ENSJJAG00000015406) #22	ENSJJAG00000010411 #22	Syne1 (ENSJJAG00000014032) #23	Myct1 (ENSJJAG00000022731) #26	Vip (ENSJJAG00000018682) #27	ENSJJAG00000005271	Fbxo5 (ENSJJAG00000006490) #29	Mtrf1l (ENSJJAG00000024141) #31	Rgs17 (ENSJJAG00000009873) #32	Ipcef1 (ENSJJAG00000001014) #35	Oprm1 (ENSJJAG00000024159) #34	ENSJJAG00000012246	Cnksr3 (ENSJJAG00000023905) #36	ENSJJAG00000012164	Scaf8 (ENSJJAG00000020480) #37	Tiam2 (ENSJJAG00000022310)
Lesser Egyptian jerboa	MODERN SPECIES	44	Lats1 (ENSJJAG00000019456) #9	Nup43 (ENSJJAG00000012578) #10	Pcmt1 (ENSJJAG00000023560) #11	Lrp11 (ENSJJAG00000024401) #12	ENSJJAG00000018910	Ppp1r14c (ENSJJAG00000020290)	ENSJJAG00000024322 #14	Plekhg1 (ENSJJAG00000023794) #15	Mthfd1l (ENSJJAG00000014266) #16	Akap12 (ENSJJAG00000021521) #17	Zbtb2 (ENSJJAG00000016308) #18	Rmnd1 (ENSJJAG00000008798)	ENSJJAG00000015720 ##20	ENSJJAG00000011473 #21	Esr1 (ENSJJAG00000015406) #22	ENSJJAG00000010411 #22	Syne1 (ENSJJAG00000014032) #23	Myct1 (ENSJJAG00000022731) #26	Vip (ENSJJAG00000018682) #27	ENSJJAG00000005271	Fbxo5 (ENSJJAG00000006490) #29	Mtrf1l (ENSJJAG00000024141) #31	Rgs17 (ENSJJAG00000009873) #32	Ipcef1 (ENSJJAG00000001014) #35	Oprm1 (ENSJJAG00000024159) #34	ENSJJAG00000012246	Cnksr3 (ENSJJAG00000023905) #36	ENSJJAG00000012164	Scaf8 (ENSJJAG00000020480) #37	Tiam2 (ENSJJAG00000022310)	Tfb1m (ENSJJAG00000022171)
Lagomorpha	ANCESTRAL SPECIES	64							ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023.b #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000154428.b #35	ENSGT00940000154428.a #36	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00950000183142.a.b.a.a	ENSGT00940000161252	ENSGT00940000160501	ENSGT00940000155634
Rabbit	MODERN SPECIES	3	ENSOCUG00000031631	ENSOCUG00000023412	SASH1 (ENSOCUG00000013851)	ENSOCUG00000027879	ENSOCUG00000013406	IYD (ENSOCUG00000013408) #14	PLEKHG1 (ENSOCUG00000016898) #15	MTHFD1L (ENSOCUG00000002781) #16	AKAP12 (ENSOCUG00000002673) #17	ZBTB2 (ENSOCUG00000022931) #18	RMND1 (ENSOCUG00000002509)	ARMT1 (ENSOCUG00000002519) #20	ENSOCUG00000036064	CCDC170 (ENSOCUG00000013530) #21	ENSOCUG00000022327	ESR1 (ENSOCUG00000004829) #22	SYNE1 (ENSOCUG00000023878) #23	ENSOCUG00000038464	MYCT1 (ENSOCUG00000017753) #26	VIP (ENSOCUG00000000513) #27	FBXO5 (ENSOCUG00000000061) #29	ENSOCUG00000000063 #31	RGS17 (ENSOCUG00000021054) #32	OPRM1 (ENSOCUG00000016025) #34	IPCEF1 (ENSOCUG00000016038) #35	ENSOCUG00000037750	CNKSR3 (ENSOCUG00000009042) #36	SCAF8 (ENSOCUG00000026063) #37	ENSOCUG00000012137	TFB1M (ENSOCUG00000012154)	ENSOCUG00000036620
Pika	MODERN SPECIES	992																ESR1 (ENSOPRG00000012663) #22	SYNE1 (ENSOPRG00000012680) #23	MYCT1 (ENSOPRG00000012840) #26
Tree shrew	MODERN SPECIES	5836																ESR1 (ENSTBEG00000005946) #22	SYNE1 (ENSTBEG00000006296) #23	VIP (ENSTBEG00000000167) #27
Primates	ANCESTRAL SPECIES	5	ENSGT00900000143690	ENSGT00390000004803 #10	ENSGT00950000183032.B.b.b #11	ENSGT00940000161275 #12	ENSGT01100000263517.b.d.m.a.a.a.a.c	ENSGT01100000263517.b.d.m.a.a.a.a.d.b	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023.b #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000154428.b #35	ENSGT00940000154428.a #36	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00950000183142.a.b.a.a	ENSGT00940000161252	ENSGT00940000160501	ENSGT00940000155634
Strepsirrhini	ANCESTRAL SPECIES	7	ENSGT00940000157684 #9	ENSGT00390000004803 #10	ENSGT00950000183032.B.b.b #11	ENSGT00940000161275 #12	ENSGT01100000263517.b.d.m.a.a.a.a.c	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.b	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023.b #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000154428.b #35	ENSGT00940000154428.a #36	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00940000161252	ENSGT00950000183142.a.b.a.a	ENSGT00940000160501	ENSGT00940000155634
Lemuriformes	ANCESTRAL SPECIES	3	ENSGT00940000157684 #9	ENSGT00390000004803 #10	ENSGT00950000183032.B.b.b #11	ENSGT00940000161275 #12	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.b.a	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.b.b	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023.b #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000154428.b #35	ENSGT00940000154428.a #36	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00950000183142.a.b.a.a	ENSGT00940000161252	ENSGT00940000160501	ENSGT00940000155634
Mouse lemur	MODERN SPECIES	28	NUP43 (ENSMICG00000006312) #10	PCMT1 (ENSMICG00000006318) #11	LRP11 (ENSMICG00000006322) #12	ENSMICG00000042667	PPP1R14C (ENSMICG00000038749)	ENSMICG00000045223	ENSMICG00000026491	IYD (ENSMICG00000004582) #14	PLEKHG1 (ENSMICG00000004593) #15	MTHFD1L (ENSMICG00000004610) #16	AKAP12 (ENSMICG00000034625) #17	ZBTB2 (ENSMICG00000027366) #18	RMND1 (ENSMICG00000010583)	ARMT1 (ENSMICG00000047928) #20	CCDC170 (ENSMICG00000029885) #21	ESR1 (ENSMICG00000007592) #22	SYNE1 (ENSMICG00000007620) #23	ENSMICG00000042037	MYCT1 (ENSMICG00000036362) #26	VIP (ENSMICG00000035122) #27	ENSMICG00000032018	FBXO5 (ENSMICG00000003809) #29	MTRF1L (ENSMICG00000003811) #31	RGS17 (ENSMICG00000003816) #32	OPRM1 (ENSMICG00000030084) #34	IPCEF1 (ENSMICG00000044930) #35	CNKSR3 (ENSMICG00000002819) #36	SCAF8 (ENSMICG00000028965) #37	ENSMICG00000035668	TIAM2 (ENSMICG00000011537)	TFB1M (ENSMICG00000045849)
Lemuriformes_a	ANCESTRAL SPECIES	28	ENSGT00940000157684 #9	ENSGT00390000004803 #10	ENSGT00950000183032.B.b.b #11	ENSGT00940000161275 #12	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.b.a	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.b.b	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023.b #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000154428.b #35	ENSGT00940000154428.a #36	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00950000183142.a.b.a.a	ENSGT00940000161252	ENSGT00940000160501	ENSGT00940000155634
Coquerels sifaka	MODERN SPECIES	358															CCDC170 (ENSPCOG00000027420) #21	ESR1 (ENSPCOG00000023782) #22	SYNE1 (ENSPCOG00000022140) #23	MYCT1 (ENSPCOG00000007366) #26	FBXO5 (ENSPCOG00000016445) #29	MTRF1L (ENSPCOG00000008406) #31	RGS17 (ENSPCOG00000016664) #32	OPRM1 (ENSPCOG00000018832) #34	IPCEF1 (ENSPCOG00000021134) #35	ENSPCOG00000023906	CNKSR3 (ENSPCOG00000015375) #36	SCAF8 (ENSPCOG00000002067) #37	TIAM2 (ENSPCOG00000018772)	TFB1M (ENSPCOG00000028453)	NOX3 (ENSPCOG00000016698)	ARID1B (ENSPCOG00000027362)	TMEM242 (ENSPCOG00000007559)
Greater bamboo lemur	MODERN SPECIES	662	LATS1 (ENSPSMG00000019622) #9	NUP43 (ENSPSMG00000019639) #10	PCMT1 (ENSPSMG00000019845) #11	LRP11 (ENSPSMG00000019915) #12	ENSPSMG00000019973	PPP1R14C (ENSPSMG00000019988)	IYD (ENSPSMG00000020030) #14	PLEKHG1 (ENSPSMG00000020047) #15	MTHFD1L (ENSPSMG00000020197) #16	AKAP12 (ENSPSMG00000020300) #17	ZBTB2 (ENSPSMG00000020305) #18	RMND1 (ENSPSMG00000020327)	ARMT1 (ENSPSMG00000020363) #20	CCDC170 (ENSPSMG00000020376) #21	ENSPSMG00000020377	ESR1 (ENSPSMG00000020487) #22	SYNE1 (ENSPSMG00000021005) #23	MYCT1 (ENSPSMG00000021158) #26	VIP (ENSPSMG00000021172) #27	FBXO5 (ENSPSMG00000021196) #29	MTRF1L (ENSPSMG00000021227) #31	RGS17 (ENSPSMG00000021243) #32	ENSPSMG00000021248	OPRM1 (ENSPSMG00000021308) #34	CNKSR3 (ENSPSMG00000021374) #36	SCAF8 (ENSPSMG00000021483) #37	TIAM2 (ENSPSMG00000021535)	TFB1M (ENSPSMG00000021571)	CLDN20 (ENSPSMG00000021575)	NOX3 (ENSPSMG00000021601)	ENSPSMG00000021609
Bushbaby	MODERN SPECIES	241						ENSOGAG00000025001	PPP1R14C (ENSOGAG00000009514)	IYD (ENSOGAG00000006759) #14	PLEKHG1 (ENSOGAG00000033661) #15	MTHFD1L (ENSOGAG00000011273) #16	AKAP12 (ENSOGAG00000011277) #17	ZBTB2 (ENSOGAG00000005262) #18	RMND1 (ENSOGAG00000005263)	ARMT1 (ENSOGAG00000010684) #20	CCDC170 (ENSOGAG00000006312) #21	ESR1 (ENSOGAG00000012580) #22	SYNE1 (ENSOGAG00000012587) #23	MYCT1 (ENSOGAG00000005357) #26	VIP (ENSOGAG00000006513) #27	FBXO5 (ENSOGAG00000006519) #29	MTRF1L (ENSOGAG00000006521) #31	RGS17 (ENSOGAG00000006526) #32	OPRM1 (ENSOGAG00000011506) #34	IPCEF1 (ENSOGAG00000011510) #35	CNKSR3 (ENSOGAG00000011512) #36	SCAF8 (ENSOGAG00000034223) #37	TIAM2 (ENSOGAG00000011674)	CLDN20 (ENSOGAG00000027759)	TFB1M (ENSOGAG00000011681)	NOX3 (ENSOGAG00000010573)	ENSOGAG00000009749
Haplorrhini	ANCESTRAL SPECIES	2	ENSGT00390000004803 #10	ENSGT00950000183032.B.b.b #11	ENSGT00940000161275 #12	ENSGT01100000263517.b.d.m.a.a.a.a.c	ENSGT00950000185143	ENSGT01100000263517.b.d.m.a.a.a.a.d.b	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023.b #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000154428.b #35	ENSGT00940000154428.a #36	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00950000183142.a.b.a.a	ENSGT00940000161252	ENSGT00940000160501	ENSGT00940000155634
Tarsier	MODERN SPECIES	5650										AKAP12 (ENSTSYG00000036793) #17	ZBTB2 (ENSTSYG00000036823) #18	RMND1 (ENSTSYG00000011119)	ARMT1 (ENSTSYG00000036344) #20	CCDC170 (ENSTSYG00000009537) #21	ENSTSYG00000035523	ESR1 (ENSTSYG00000006280) #22	SYNE1 (ENSTSYG00000010468) #23
Simiiformes	ANCESTRAL SPECIES	5	ENSGT00390000004803 #10	ENSGT00950000183032.B.b.b #11	ENSGT00940000161275 #12	ENSGT01100000263517.b.d.m.a.a.a.a.c	ENSGT01100000263517.b.d.m.a.a.a.a.d.b	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.b	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023.b #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000154428.b #35	ENSGT00940000154428.a #36	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00950000183142.a.b.a.a	ENSGT00940000161252	ENSGT00940000160501	ENSGT00940000155634
Catarrhini	ANCESTRAL SPECIES	5	ENSGT00950000183032.B.b.b #11	ENSGT00940000161275 #12	ENSGT01100000263517.b.d.m.a.a.a.a.c.q.a	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.a	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.b	ENSGT01100000263517.b.d.m.a.a.a.a.d.b	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023.b #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000154428.b #35	ENSGT00940000154428.a #36	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00950000183142.a.b.a.a	ENSGT00940000161252	ENSGT00940000160501	ENSGT00940000155634
Hominoidea	ANCESTRAL SPECIES	4	ENSGT00940000161275 #12	ENSGT01100000263517.b.d.m.a.a.a.a.c.q.a	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.b.h	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.a	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.b.g	ENSGT01100000263517.b.d.m.a.a.a.a.d.b	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023.b #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000154428.b #35	ENSGT00940000154428.a #36	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00950000183142.a.b.a.a	ENSGT00940000161252	ENSGT00940000160501	ENSGT00940000155634
Hominidae	ANCESTRAL SPECIES	5	ENSGT00940000161275 #12	ENSGT01100000263517.b.d.m.a.a.a.a.c.q.a	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.b.g	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.a	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.b.h	ENSGT01100000263517.b.d.m.a.a.a.a.d.b	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023.b #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000154428.b #35	ENSGT00940000154428.a #36	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00950000183142.a.b.a.a	ENSGT00940000161252	ENSGT00940000160501	ENSGT00940000155634
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	4	ENSGT01100000263517.b.d.m.a.a.a.a.c.q.a	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.b.g	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.a.a	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.a.b	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.b.h	ENSGT01100000263517.b.d.m.a.a.a.a.d.b	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023.b #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000154428.b #35	ENSGT00940000154428.a #36	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00950000183142.a.b.a.a	ENSGT00940000161252	ENSGT00940000160501	ENSGT00940000155634
Gorilla	MODERN SPECIES	19	RAET1E (ENSGGOG00000009347)	ENSGGOG00000016690	ULBP1 (ENSGGOG00000036889)	ENSGGOG00000007707	ENSGGOG00000007925	ULBP3 (ENSGGOG00000003891)	ENSGGOG00000026573	IYD (ENSGGOG00000036276) #14	PLEKHG1 (ENSGGOG00000014887) #15	MTHFD1L (ENSGGOG00000003642) #16	AKAP12 (ENSGGOG00000024737) #17	ZBTB2 (ENSGGOG00000010529) #18	RMND1 (ENSGGOG00000007148)	ARMT1 (ENSGGOG00000023947) #20	CCDC170 (ENSGGOG00000004497) #21	ESR1 (ENSGGOG00000009678) #22	SYNE1 (ENSGGOG00000014892) #23	ENSGGOG00000042786 #26	VIP (ENSGGOG00000028135) #27	FBXO5 (ENSGGOG00000001606) #29	MTRF1L (ENSGGOG00000022451) #31	RGS17 (ENSGGOG00000026033) #32	OPRM1 (ENSGGOG00000024312) #34	IPCEF1 (ENSGGOG00000015698) #35	CNKSR3 (ENSGGOG00000001228) #36	SCAF8 (ENSGGOG00000008645) #37	TIAM2 (ENSGGOG00000012161)	TFB1M (ENSGGOG00000012189)	CLDN20 (ENSGGOG00000000295)	NOX3 (ENSGGOG00000015724)	ARID1B (ENSGGOG00000011723)
Homo/Pan group	ANCESTRAL SPECIES	5	ENSGT00940000161275 #12	ENSGT01100000263517.b.d.m.a.a.a.a.c.q.a	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.b.g	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.a.a	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.b.h	ENSGT01100000263517.b.d.m.a.a.a.a.d.b	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023.b #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000154428.b #35	ENSGT00940000154428.a #36	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00950000183142.a.b.a.a	ENSGT00940000161252	ENSGT00940000160501	ENSGT00940000155634
Human	MODERN SPECIES	18	RAET1E (ENSG00000164520)	RAET1G (ENSG00000203722)	ULBP2 (ENSG00000131015)	ULBP1 (ENSG00000111981)	RAET1L (ENSG00000155918)	ULBP3 (ENSG00000131019)	PPP1R14C (ENSG00000198729)	IYD (ENSG00000009765) #14	PLEKHG1 (ENSG00000120278) #15	MTHFD1L (ENSG00000120254) #16	AKAP12 (ENSG00000131016) #17	ZBTB2 (ENSG00000181472) #18	RMND1 (ENSG00000155906)	ARMT1 (ENSG00000146476) #20	CCDC170 (ENSG00000120262) #21	ESR1 (ENSG00000091831) #22	SYNE1 (ENSG00000131018) #23	MYCT1 (ENSG00000120279) #26	VIP (ENSG00000146469) #27	FBXO5 (ENSG00000112029) #29	MTRF1L (ENSG00000112031) #31	RGS17 (ENSG00000091844) #32	OPRM1 (ENSG00000112038) #34	IPCEF1 (ENSG00000074706) #35	ENSG00000288520	CNKSR3 (ENSG00000153721) #36	SCAF8 (ENSG00000213079) #37	TIAM2 (ENSG00000146426)	TFB1M (ENSG00000029639)	CLDN20 (ENSG00000171217)	NOX3 (ENSG00000074771)
Pan	ANCESTRAL SPECIES	5	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.b.g	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.b.h.a	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.a.a	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.b.h.b	ENSGT01100000263517.b.d.m.a.a.a.a.d.b	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000154295.y.b.f	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023.b #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00390000005534.b.b.c.b.a.a.b.a.a.d.b.b	ENSGT00940000158236 #34	ENSGT00940000154428.b #35	ENSGT00940000154428.a #36	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00950000183142.a.b.a.a	ENSGT00940000161252	ENSGT00940000160501
Chimpanzee	MODERN SPECIES	19	ULBP1 (ENSPTRG00000043696)	ENSPTRG00000044735	ULBP3 (ENSPTRG00000034286)	PPP1R14C (ENSPTRG00000023599)	IYD (ENSPTRG00000051321) #14	PLEKHG1 (ENSPTRG00000018709) #15	ENSPTRG00000044725	ENSPTRG00000018710 #16	ENSPTRG00000049112	ENSPTRG00000051736	AKAP12 (ENSPTRG00000018711) #17	ZBTB2 (ENSPTRG00000018712) #18	RMND1 (ENSPTRG00000018713)	ARMT1 (ENSPTRG00000018714) #20	CCDC170 (ENSPTRG00000018715) #21	ESR1 (ENSPTRG00000018716) #22	SYNE1 (ENSPTRG00000018717) #23	MYCT1 (ENSPTRG00000018719) #26	VIP (ENSPTRG00000018720) #27	FBXO5 (ENSPTRG00000018721) #29	MTRF1L (ENSPTRG00000018722) #31	RGS17 (ENSPTRG00000029367) #32	ENSPTRG00000034202	OPRM1 (ENSPTRG00000018723) #34	IPCEF1 (ENSPTRG00000018724) #35	CNKSR3 (ENSPTRG00000018725) #36	SCAF8 (ENSPTRG00000018727) #37	TIAM2 (ENSPTRG00000034266)	TFB1M (ENSPTRG00000018730)	CLDN20 (ENSPTRG00000018731)	NOX3 (ENSPTRG00000018732)
Bonobo	MODERN SPECIES	19	ENSPPAG00000014931	ULBP1 (ENSPPAG00000041468)	ENSPPAG00000012588	ULBP3 (ENSPPAG00000030872)	ENSPPAG00000038058	IYD (ENSPPAG00000035207) #14	PLEKHG1 (ENSPPAG00000040411) #15	ENSPPAG00000038707	MTHFD1L (ENSPPAG00000034031) #16	ENSPPAG00000029607	AKAP12 (ENSPPAG00000027286) #17	ZBTB2 (ENSPPAG00000033109) #18	RMND1 (ENSPPAG00000034708)	ARMT1 (ENSPPAG00000030485) #20	CCDC170 (ENSPPAG00000043973) #21	ESR1 (ENSPPAG00000025747) #22	SYNE1 (ENSPPAG00000027499) #23	MYCT1 (ENSPPAG00000028230) #26	VIP (ENSPPAG00000031048) #27	FBXO5 (ENSPPAG00000017794) #29	MTRF1L (ENSPPAG00000031251) #31	RGS17 (ENSPPAG00000036399) #32	ENSPPAG00000039443	OPRM1 (ENSPPAG00000041853) #34	ENSPPAG00000038809 #35	CNKSR3 (ENSPPAG00000040246) #36	ENSPPAG00000018260	ZDHHC14 (ENSPPAG00000026904)	SNX9 (ENSPPAG00000028633)	SYNJ2 (ENSPPAG00000028831)	SERAC1 (ENSPPAG00000032315)
Orangutan	MODERN SPECIES	19	ENSPPYG00000017098	ENSPPYG00000017099	ULBP1 (ENSPPYG00000017100)	ENSPPYG00000017101	ULBP3 (ENSPPYG00000017268)	PPP1R14C (ENSPPYG00000017102)	IYD (ENSPPYG00000017103) #14	PLEKHG1 (ENSPPYG00000017104) #15	MTHFD1L (ENSPPYG00000017105) #16	AKAP12 (ENSPPYG00000017106) #17	ZBTB2 (ENSPPYG00000017107) #18	RMND1 (ENSPPYG00000017108)	ARMT1 (ENSPPYG00000017109) #20	ENSPPYG00000017110	CCDC170 (ENSPPYG00000017111) #21	ESR1 (ENSPPYG00000017112) #22	SYNE1 (ENSPPYG00000017113) #23	MYCT1 (ENSPPYG00000017114) #26	VIP (ENSPPYG00000017115) #27	FBXO5 (ENSPPYG00000017116) #29	MTRF1L (ENSPPYG00000017117) #31	RGS17 (ENSPPYG00000017118) #32	OPRM1 (ENSPPYG00000029500) #34	IPCEF1 (ENSPPYG00000017119) #35	CNKSR3 (ENSPPYG00000017120) #36	SCAF8 (ENSPPYG00000017121) #37	TIAM2 (ENSPPYG00000017122)	TFB1M (ENSPPYG00000017123)	CLDN20 (ENSPPYG00000017124)	NOX3 (ENSPPYG00000017125)	ARID1B (ENSPPYG00000017126)
Gibbon	MODERN SPECIES	18	ENSNLEG00000030810	ULBP1 (ENSNLEG00000015354)	ULBP3 (ENSNLEG00000015356)	ENSNLEG00000030972	PPP1R14C (ENSNLEG00000015360)	IYD (ENSNLEG00000015363) #14	PLEKHG1 (ENSNLEG00000015370) #15	MTHFD1L (ENSNLEG00000015374) #16	ENSNLEG00000035383	ENSNLEG00000035803	AKAP12 (ENSNLEG00000015379) #17	ZBTB2 (ENSNLEG00000015384) #18	RMND1 (ENSNLEG00000015387)	ARMT1 (ENSNLEG00000015395) #20	CCDC170 (ENSNLEG00000015396) #21	ESR1 (ENSNLEG00000015408) #22	SYNE1 (ENSNLEG00000015419) #23	ENSNLEG00000035305 #26	VIP (ENSNLEG00000015432) #27	FBXO5 (ENSNLEG00000015443) #29	MTRF1L (ENSNLEG00000015450) #31	RGS17 (ENSNLEG00000015461) #32	OPRM1 (ENSNLEG00000015467) #34	IPCEF1 (ENSNLEG00000015476) #35	CNKSR3 (ENSNLEG00000015493) #36	SCAF8 (ENSNLEG00000015509) #37	TIAM2 (ENSNLEG00000015541)	TFB1M (ENSNLEG00000034352)	CLDN20 (ENSNLEG00000015639)	NOX3 (ENSNLEG00000015640)	ENSNLEG00000015656
Cercopithecidae	ANCESTRAL SPECIES	34	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.f	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.b.f.b	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.a.c.b.a	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.b.f.a.a.a	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.e	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00940000153336.e.a.a.a.b.b	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023.b #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683.l.b #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000154428.b #35	ENSGT00940000154428.a #36	ENSGT00390000009366.d	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00940000161252	ENSGT00950000183142.a.b.a.a	ENSGT00940000160501
Cercopithecinae	ANCESTRAL SPECIES	6	ENSGT00980000198488.m.a.a.a.a.k.a.d.b	ENSGT00980000198488.n	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.a.c.a	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.b.f.a.a.a.a	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.e	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00940000153336.e.a.a.a.b.b	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023.b #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683.l.b #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000154428.b #35	ENSGT00940000154428.a #36	ENSGT00390000009366.d	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00950000183142.a.b.a.a	ENSGT00940000161252	ENSGT00940000160501
Cercopithecinae_a	ANCESTRAL SPECIES	6	ENSGT01100000263517.b.d.m.a.a.a.a.c.q.b	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.f	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.b.f.a.a.a.a.b	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.e.a	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00860000135570.b	ENSGT00940000153336.e.a.a.a.b.b	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023.b.g.a #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683.l.b #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000154428.b #35	ENSGT00940000154428.a #36	ENSGT00390000009366.d	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00950000183142.a.b.a.a	ENSGT00940000161252	ENSGT00940000160501
Cercopithecinae_b	ANCESTRAL SPECIES	17	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.f	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.a.d	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.b.f.a.a.a.a.b	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.e.a	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00860000135570.b	ENSGT00940000153336.e.a.a.a.b.b	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023.b.g.a #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683.l.b #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000154428.b #35	ENSGT00940000154428.a #36	ENSGT00390000009366.d	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00940000161252	ENSGT00950000183142.a.b.a.a	ENSGT00940000160501
Cercopithecinae_d	ANCESTRAL SPECIES	35	ENSGT01100000263517.b.d.m.a.a.a.a.c.q.b	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.f	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.b.f.a.a.a.a.b	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.e.a	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00860000135570.b	ENSGT00940000153336.e.a.a.a.b.b	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023.b.g.a #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683.l.b #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000154428.b #35	ENSGT00940000154428.a #36	ENSGT00390000009366.d	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00940000161252	ENSGT00950000183142.a.b.a.a	ENSGT00940000160501
Sooty mangabey	MODERN SPECIES	139	ENSCATG00000032541	ENSCATG00000036127	ENSCATG00000036981	ENSCATG00000012147	PPP1R14C (ENSCATG00000033340)	IYD (ENSCATG00000043048) #14	PLEKHG1 (ENSCATG00000037764) #15	MTHFD1L (ENSCATG00000042071) #16	ENSCATG00000041374	ENSCATG00000042437	AKAP12 (ENSCATG00000029672) #17	ZBTB2 (ENSCATG00000031949) #18	RMND1 (ENSCATG00000032389)	ARMT1 (ENSCATG00000043831) #20	CCDC170 (ENSCATG00000031654) #21	ESR1 (ENSCATG00000030182) #22	SYNE1 (ENSCATG00000040903) #23	MYCT1 (ENSCATG00000032119) #26	VIP (ENSCATG00000032792) #27	FBXO5 (ENSCATG00000045339) #29	ENSCATG00000035276 #31	RGS17 (ENSCATG00000040739) #32	OPRM1 (ENSCATG00000029597) #34	IPCEF1 (ENSCATG00000034082) #35	CNKSR3 (ENSCATG00000030116) #36	ENSCATG00000037387	SCAF8 (ENSCATG00000035361) #37	TIAM2 (ENSCATG00000030651)	TFB1M (ENSCATG00000009009)	NOX3 (ENSCATG00000020816)	ENSCATG00000020443
Drill	MODERN SPECIES	1219																ESR1 (ENSMLEG00000040148) #22	SYNE1 (ENSMLEG00000042879) #23	MYCT1 (ENSMLEG00000024555) #26	VIP (ENSMLEG00000040460) #27	FBXO5 (ENSMLEG00000031230) #29	ENSMLEG00000034354 #31	RGS17 (ENSMLEG00000012630) #32
Olive baboon	MODERN SPECIES	16	ENSPANG00000050994	ENSPANG00000047095	ENSPANG00000013265	ULBP3 (ENSPANG00000006926)	PPP1R14C (ENSPANG00000048658)	IYD (ENSPANG00000026300) #14	ENSPANG00000038252	PLEKHG1 (ENSPANG00000009444) #15	MTHFD1L (ENSPANG00000024767) #16	AKAP12 (ENSPANG00000018393) #17	ZBTB2 (ENSPANG00000046901) #18	RMND1 (ENSPANG00000018391)	ARMT1 (ENSPANG00000006927) #20	CCDC170 (ENSPANG00000001110) #21	ENSPANG00000050683	ESR1 (ENSPANG00000020729) #22	SYNE1 (ENSPANG00000024958) #23	MYCT1 (ENSPANG00000026234) #26	VIP (ENSPANG00000004077) #27	FBXO5 (ENSPANG00000046787) #29	MTRF1L (ENSPANG00000033150) #31	RGS17 (ENSPANG00000022190) #32	ENSPANG00000050384	OPRM1 (ENSPANG00000005833) #34	ENSPANG00000044645	IPCEF1 (ENSPANG00000023119) #35	CNKSR3 (ENSPANG00000005834) #36	ENSPANG00000048571	SCAF8 (ENSPANG00000017489) #37	ENSPANG00000050814	ENSPANG00000048153
Macaca	ANCESTRAL SPECIES	9	ENSGT01100000263517.b.d.m.a.a.a.a.c.q.b	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.f	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.b.f.a.a.a.a.b	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.e.a	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00860000135570.b	ENSGT00940000153336.e.a.a.a.b.b	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023.b.g.a #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683.l.b #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000154428.b #35	ENSGT00940000154428.a #36	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00950000183142.a.b.a.a	ENSGT00940000161252	ENSGT00940000160501	ENSGT00950000183030.m.a.a.b.b.b.a.b
Macaca_a	ANCESTRAL SPECIES	9	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.b.f.a.a.a.a.a	ENSGT01100000263517.b.d.m.a.a.a.a.c.q.b	ENSGT00950000185143	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.f	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.b.f.a.a.a.a.b	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT01100000263539.b.a.a.a.a.a.b.b.a.a.a.a.a.b.a.b.b.a.a.a.a.b	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023.b.g.a #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT01050000244986.a.b.a.a	ENSGT00530000063692.b #29	ENSGT00940000155683.l.b #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000154428.b #35	ENSGT01100000263539.b.a.a.a.a.a.b.b.a.a.a.b.a.b.b.a	ENSGT00940000154428.a #36	ENSGT00530000063946.b #37	ENSGT00940000167556.a	ENSGT00940000157012	ENSGT00950000183142.a.b.a.a
Rhesus	MODERN SPECIES	14	ENSMMUG00000052092	ENSMMUG00000063037	ULBP3 (ENSMMUG00000047033)	ENSMMUG00000029466	PPP1R14C (ENSMMUG00000022110)	IYD (ENSMMUG00000010802) #14	PLEKHG1 (ENSMMUG00000019772) #15	MTHFD1L (ENSMMUG00000019774) #16	AKAP12 (ENSMMUG00000023265) #17	ENSMMUG00000058018	ZBTB2 (ENSMMUG00000029475) #18	ENSMMUG00000050174	RMND1 (ENSMMUG00000018342)	ARMT1 (ENSMMUG00000060940) #20	CCDC170 (ENSMMUG00000018346) #21	ESR1 (ENSMMUG00000019045) #22	SYNE1 (ENSMMUG00000019048) #23	MYCT1 (ENSMMUG00000019073) #26	VIP (ENSMMUG00000019074) #27	ENSMMUG00000058069	FBXO5 (ENSMMUG00000019076) #29	MTRF1L (ENSMMUG00000020178) #31	RGS17 (ENSMMUG00000019078) #32	OPRM1 (ENSMMUG00000022691) #34	IPCEF1 (ENSMMUG00000009861) #35	ENSMMUG00000055883	CNKSR3 (ENSMMUG00000053073) #36	ENSMMUG00000056312	SCAF8 (ENSMMUG00000015163) #37	ENSMMUG00000053117	TIAM2 (ENSMMUG00000011169)
Crab-eating macaque	MODERN SPECIES	14	ENSMFAG00000042568	ULBP3 (ENSMFAG00000002019)	ENSMFAG00000042333	PPP1R14C (ENSMFAG00000001889)	IYD (ENSMFAG00000031023) #14	PLEKHG1 (ENSMFAG00000043598) #15	MTHFD1L (ENSMFAG00000031281) #16	ENSMFAG00000052108	ENSMFAG00000063261	ENSMFAG00000063226	AKAP12 (ENSMFAG00000039897) #17	ZBTB2 (ENSMFAG00000031487) #18	RMND1 (ENSMFAG00000034583)	ENSMFAG00000035719 #20	CCDC170 (ENSMFAG00000034314) #21	ESR1 (ENSMFAG00000033966) #22	SYNE1 (ENSMFAG00000037479) #23	ENSMFAG00000057449	ENSMFAG00000057221	ENSMFAG00000063235	MYCT1 (ENSMFAG00000055463) #26	VIP (ENSMFAG00000040930) #27	ENSMFAG00000051403	FBXO5 (ENSMFAG00000042214) #29	MTRF1L (ENSMFAG00000039727) #31	RGS17 (ENSMFAG00000039353) #32	ENSMFAG00000047203	OPRM1 (ENSMFAG00000002542) #34	IPCEF1 (ENSMFAG00000045011) #35	ENSMFAG00000060374	ENSMFAG00000058345
Pig-tailed macaque	MODERN SPECIES	152	ENSMNEG00000030286	ENSMNEG00000029044	ENSMNEG00000041766	ENSMNEG00000022408	PPP1R14C (ENSMNEG00000029660)	IYD (ENSMNEG00000035661) #14	PLEKHG1 (ENSMNEG00000027854) #15	MTHFD1L (ENSMNEG00000039466) #16	ENSMNEG00000028201	ENSMNEG00000027441	AKAP12 (ENSMNEG00000037368) #17	ZBTB2 (ENSMNEG00000043530) #18	RMND1 (ENSMNEG00000039525)	ARMT1 (ENSMNEG00000027559) #20	CCDC170 (ENSMNEG00000021323) #21	ESR1 (ENSMNEG00000033178) #22	SYNE1 (ENSMNEG00000030564) #23	MYCT1 (ENSMNEG00000044362) #26	VIP (ENSMNEG00000027106) #27	FBXO5 (ENSMNEG00000036254) #29	ENSMNEG00000030044 #31	RGS17 (ENSMNEG00000039093) #32	SLC24A2 (ENSMNEG00000031804)	ENSMNEG00000045351	ENSMNEG00000018647	ENSMNEG00000035988	ENSMNEG00000032955	ACER2 (ENSMNEG00000044407)	ENSMNEG00000039493	DENND4C (ENSMNEG00000042842)	ENSMNEG00000028839
Vervet Monkey	MODERN SPECIES	4	GPR63 (ENSCSAG00000018980)	ENSCSAG00000014508	FHL5 (ENSCSAG00000014491)	UFL1 (ENSCSAG00000014473)	ULBP3 (ENSCSAG00000014456)	PPP1R14C (ENSCSAG00000014450)	IYD (ENSCSAG00000014444) #14	PLEKHG1 (ENSCSAG00000014433) #15	MTHFD1L (ENSCSAG00000014394) #16	ENSCSAG00000014290	AKAP12 (ENSCSAG00000014270) #17	ZBTB2 (ENSCSAG00000014259) #18	RMND1 (ENSCSAG00000014250)	ARMT1 (ENSCSAG00000014244) #20	CCDC170 (ENSCSAG00000014238) #21	ESR1 (ENSCSAG00000014236) #22	SYNE1 (ENSCSAG00000014028) #23	ENSCSAG00000018981	MYCT1 (ENSCSAG00000013534) #26	VIP (ENSCSAG00000013530) #27	FBXO5 (ENSCSAG00000013521) #29	MTRF1L (ENSCSAG00000013511) #31	RGS17 (ENSCSAG00000013490) #32	OPRM1 (ENSCSAG00000013480) #34	IPCEF1 (ENSCSAG00000013457) #35	CNKSR3 (ENSCSAG00000013444) #36	SCAF8 (ENSCSAG00000013430) #37	TIAM2 (ENSCSAG00000013369)	TFB1M (ENSCSAG00000013259)	CLDN20 (ENSCSAG00000018982)	NOX3 (ENSCSAG00000013249)
Rhinopithecus	ANCESTRAL SPECIES	298	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.b.f.a.a.b	ENSGT01100000263517.b.d.m.a.a.a.a.c.r	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.f	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.b.f.b	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.e	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00940000153336.e.a.a.a.b.b	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023.b #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27
Black snub-nosed monkey	MODERN SPECIES	873		ENSRBIG00000035145	ENSRBIG00000000894	ENSRBIG00000031095	ENSRBIG00000028119	ENSRBIG00000039779	PPP1R14C (ENSRBIG00000034753)	IYD (ENSRBIG00000011296) #14	PLEKHG1 (ENSRBIG00000009483) #15	MTHFD1L (ENSRBIG00000042332) #16	ENSRBIG00000038114	AKAP12 (ENSRBIG00000017303) #17	ZBTB2 (ENSRBIG00000031111) #18	RMND1 (ENSRBIG00000036401)	ARMT1 (ENSRBIG00000029058) #20	ESR1 (ENSRBIG00000009095) #22	ENSRBIG00000006739 #23	ENSRBIG00000032089 #24
Golden snub-nosed monkey	MODERN SPECIES	2440	ENSRROG00000040376	ENSRROG00000043406	ENSRROG00000045078	ENSRROG00000027630	ENSRROG00000010004	PPP1R14C (ENSRROG00000029040)	IYD (ENSRROG00000044909) #14	PLEKHG1 (ENSRROG00000044362) #15	MTHFD1L (ENSRROG00000030571) #16	ENSRROG00000030278	AKAP12 (ENSRROG00000038530) #17	ZBTB2 (ENSRROG00000041204) #18	RMND1 (ENSRROG00000036148)	ARMT1 (ENSRROG00000007841) #20	CCDC170 (ENSRROG00000039988) #21	ENSRROG00000045062 #22
Platyrrhini	ANCESTRAL SPECIES	2	ENSGT00390000004803 #10	ENSGT00950000183032.B.b.b #11	ENSGT00940000161275 #12	ENSGT01100000263517.b.d.m.a.a.a.a.c	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.b	ENSGT01100000263517.b.d.m.a.a.a.a.d.b	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023.b #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00930000151026.h	ENSGT00940000154481.a.b #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d.db #32	ENSGT00940000158236 #34	ENSGT00940000154428.b #35	ENSGT00940000154428.a #36	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00950000183142.a.b.a.a	ENSGT00940000161252	ENSGT00940000160501
Mas night monkey	MODERN SPECIES	265	ENSANAG00000026085	ENSANAG00000033944	ENSANAG00000036412	ENSANAG00000024161	ENSANAG00000022159	PPP1R14C (ENSANAG00000020628)	IYD (ENSANAG00000029610) #14	PLEKHG1 (ENSANAG00000027450) #15	MTHFD1L (ENSANAG00000020601) #16	ENSANAG00000028041	AKAP12 (ENSANAG00000033578) #17	ZBTB2 (ENSANAG00000035402) #18	RMND1 (ENSANAG00000029850)	ARMT1 (ENSANAG00000027746) #20	CCDC170 (ENSANAG00000034546) #21	ESR1 (ENSANAG00000033920) #22	ENSANAG00000032083	SYNE1 (ENSANAG00000028713) #23	MYCT1 (ENSANAG00000028766) #26	VIP (ENSANAG00000033466) #27	ENSANAG00000026755	FBXO5 (ENSANAG00000000307) #29	MTRF1L (ENSANAG00000007078) #31	RGS17 (ENSANAG00000020543) #32	OPRM1 (ENSANAG00000036165) #34	IPCEF1 (ENSANAG00000025255) #35	CNKSR3 (ENSANAG00000026546) #36	ENSANAG00000029661	SCAF8 (ENSANAG00000036184) #37	ENSANAG00000014514	TIAM2 (ENSANAG00000025426)
Cebidae	ANCESTRAL SPECIES	5	ENSGT00950000183032.B.b.b.c.a #11	ENSGT00940000161275 #12	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.b	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.a	ENSGT01100000263517.b.d.m.a.a.a.a.c	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.b	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023.b #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00930000151026.h	ENSGT00940000154481.a.b #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d.db #32	ENSGT00940000158236 #34	ENSGT00940000154428.b #35	ENSGT00940000154428.a #36	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00950000183142.a.b.a.a	ENSGT00940000161252	ENSGT00940000160501
Marmoset	MODERN SPECIES	16	LRP11 (ENSCJAG00000009284) #12	ENSCJAG00000060913	ENSCJAG00000021540	ENSCJAG00000077951	ENSCJAG00000013469	ENSCJAG00000084847	ENSCJAG00000077421	IYD (ENSCJAG00000013438) #14	PLEKHG1 (ENSCJAG00000013414) #15	MTHFD1L (ENSCJAG00000013404) #16	AKAP12 (ENSCJAG00000013402) #17	ZBTB2 (ENSCJAG00000057010) #18	RMND1 (ENSCJAG00000013350)	ARMT1 (ENSCJAG00000013343) #20	CCDC170 (ENSCJAG00000013339) #21	ESR1 (ENSCJAG00000013293) #22	SYNE1 (ENSCJAG00000012842) #23	ENSCJAG00000073970	ENSCJAG00000083311	VIP (ENSCJAG00000012816) #27	FBXO5 (ENSCJAG00000012799) #29	MTRF1L (ENSCJAG00000044179) #31	RGS17 (ENSCJAG00000012783) #32	ENSCJAG00000084075	ENSCJAG00000078595	OPRM1 (ENSCJAG00000012747) #34	IPCEF1 (ENSCJAG00000012736) #35	ENSCJAG00000081721	CNKSR3 (ENSCJAG00000012720) #36	SCAF8 (ENSCJAG00000012631) #37	TIAM2 (ENSCJAG00000012559)
Cebidae_a	ANCESTRAL SPECIES	26	ENSGT00950000183032.B.b.b.c.a #11	ENSGT00940000161275 #12	ENSGT01100000263517.b.d.m.a.a.a.a.c	ENSGT01100000263517.b.d.m.a.a.a.a.d.a.b	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.a	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.b	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023.b #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00930000151026.h	ENSGT00940000154481.a.b #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d.db #32	ENSGT00940000158236 #34	ENSGT00940000154428.b #35	ENSGT00940000154428.a #36	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00940000161252	ENSGT00950000183142.a.b.a.a	ENSGT00940000160501
Capuchin	MODERN SPECIES	6						IYD (ENSCCAG00000036983) #14	PLEKHG1 (ENSCCAG00000027481) #15	MTHFD1L (ENSCCAG00000033752) #16	AKAP12 (ENSCCAG00000030534) #17	ZBTB2 (ENSCCAG00000029241) #18	RMND1 (ENSCCAG00000036014)	ARMT1 (ENSCCAG00000027013) #20	CCDC170 (ENSCCAG00000035936) #21	ENSCCAG00000036007	ENSCCAG00000023199	ESR1 (ENSCCAG00000030983) #22	SYNE1 (ENSCCAG00000034147) #23	MYCT1 (ENSCCAG00000031493) #26	VIP (ENSCCAG00000034128) #27	FBXO5 (ENSCCAG00000035526) #29	MTRF1L (ENSCCAG00000035144) #31	RGS17 (ENSCCAG00000030080) #32	OPRM1 (ENSCCAG00000025874) #34	IPCEF1 (ENSCCAG00000036029) #35	CNKSR3 (ENSCCAG00000022570) #36	SCAF8 (ENSCCAG00000024952) #37	TIAM2 (ENSCCAG00000023099)	CLDN20 (ENSCCAG00000002679)	TFB1M (ENSCCAG00000015250)	NOX3 (ENSCCAG00000030330)	ARID1B (ENSCCAG00000027348)
Bolivian squirrel monkey	MODERN SPECIES	227	ENSSBOG00000012890	LRP11 (ENSSBOG00000022204) #12	ENSSBOG00000012710	ENSSBOG00000034441	ULBP3 (ENSSBOG00000032354)	PPP1R14C (ENSSBOG00000028293)	IYD (ENSSBOG00000026146) #14	PLEKHG1 (ENSSBOG00000022607) #15	MTHFD1L (ENSSBOG00000024137) #16	AKAP12 (ENSSBOG00000029667) #17	ZBTB2 (ENSSBOG00000024551) #18	ENSSBOG00000020712	RMND1 (ENSSBOG00000021941)	ARMT1 (ENSSBOG00000019971) #20	CCDC170 (ENSSBOG00000026119) #21	ENSSBOG00000029729 #22
Laurasiatheria	ANCESTRAL SPECIES	7	ENSGT00900000143690	ENSGT00390000004803 #10	ENSGT00950000183032.B.b.b #11	ENSGT00940000161275 #12	ENSGT01100000263517.b.d.m.a.a.a.a.c	ENSGT01100000263517.b.d.m.a.a.a.a.d.b	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023.b #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000154428.b #35	ENSGT00940000154428.a #36	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00950000183142.a.b.a.a	ENSGT00940000161252	ENSGT00940000160501	ENSGT00940000155634
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00940000158133 #22
Hedgehog	MODERN SPECIES	206																ENSEEUG00000000828 #22
Common shrew	MODERN SPECIES	7307																ESR1 (ENSSARG00000004419) #22
Laurasiatheria_a	ANCESTRAL SPECIES	7	ENSGT00900000143690	ENSGT00390000004803 #10	ENSGT00950000183032.B.b.b #11	ENSGT00940000161275 #12	ENSGT01100000263517.b.d.m.a.a.a.a.c	ENSGT01100000263517.b.d.m.a.a.a.a.d.b	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023.b #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b.bc #23	ENSGT00940000174968	ENSGT00940000165162 #24	ENSGT00940000154481.a.b.ac.a #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000154428.b #35	ENSGT00940000154428.a #36	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00950000183142.a.b.a.a
Laurasiatheria_b	ANCESTRAL SPECIES	7	ENSGT00900000143690	ENSGT00390000004803 #10	ENSGT00950000183032.B.b.b #11	ENSGT00940000161275 #12	ENSGT01100000263517.b.d.m.a.a.a.a.c	ENSGT01100000263517.b.d.m.a.a.a.a.d.b	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023.b #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b.bc #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000154428.b #35	ENSGT00940000154428.a #36	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00950000183142.a.b.a.a	ENSGT00940000161252	ENSGT00940000160501	ENSGT00940000155634
Carnivora	ANCESTRAL SPECIES	4	ENSGT00900000143690	ENSGT00390000004803 #10	ENSGT00950000183032.B.b.b #11	ENSGT00940000161275 #12	ENSGT01100000263517.b.d.m.a.a.a.a.c	ENSGT01100000263517.b.d.m.a.a.a.a.d.b	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023.b #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b.bc #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000154428.b #35	ENSGT00940000154428.a #36	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00950000183142.a.b.a.a	ENSGT00940000161252	ENSGT00940000160501	ENSGT00940000155634
Caniformia	ANCESTRAL SPECIES	3	ENSGT00900000143690	ENSGT00390000004803 #10	ENSGT00950000183032.B.b.b #11	ENSGT00940000161275 #12	ENSGT01100000263517.b.d.m.a.a.a.a.c	ENSGT01100000263517.b.d.m.a.a.a.a.d.b	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023.b #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b.bc #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000154428.b #35	ENSGT00940000154428.a #36	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00950000183142.a.b.a.a	ENSGT00940000161252	ENSGT00940000160501	ENSGT00940000155634
Canidae	ANCESTRAL SPECIES	34	ENSGT00390000004803 #10	ENSGT00950000183032.B.b.b #11	ENSGT00940000161275 #12	ENSGT01100000263517.b.d.m.a.a.a.a.c	ENSGT01100000263517.b.d.m.a.a.a.a.d.b	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00950000182802.B.a.a.a.b.a.a	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023.b #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b.bc #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000154428.b #35	ENSGT00940000154428.a #36	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00950000183142.a.b.a.a	ENSGT00940000161252	ENSGT00940000160501	ENSGT00940000155634
Canis_lupus	ANCESTRAL SPECIES		ENSGT00950000183032.B.b.b #11	ENSGT00940000161275 #12	ENSGT01100000263517.b.d.m.a.a.a.a.c	ENSGT00390000015489.q.a.f.a	ENSGT01100000263517.b.d.m.a.a.a.a.d.b	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00950000182802.B.a.a.a.b.a.a	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023.b #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b.bc #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000154428.b #35	ENSGT00940000154428.a #36	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00950000183142.a.b.a.a	ENSGT00940000161252	ENSGT00940000160501	ENSGT00940000155634
Dingo	MODERN SPECIES	125	LRP11 (ENSCAFG00020013981) #12	ENSCAFG00020014007	ENSCAFG00020014013	PPP1R14C (ENSCAFG00020014021)	IYD (ENSCAFG00020014043) #14	PLEKHG1 (ENSCAFG00020014055) #15	ENSCAFG00020014068 #16	ENSCAFG00020014133 #16	ENSCAFG00020014694	AKAP12 (ENSCAFG00020014695) #17	ZBTB2 (ENSCAFG00020014696) #18	RMND1 (ENSCAFG00020014697)	ENSCAFG00020014700 #20	ENSCAFG00020014702 #20	CCDC170 (ENSCAFG00020014704) #21	ESR1 (ENSCAFG00020014707) #22	ENSCAFG00020014804 #23	ENSCAFG00020014881 #23	MYCT1 (ENSCAFG00020014923) #26	VIP (ENSCAFG00020014925) #27	FBXO5 (ENSCAFG00020014935) #29	MTRF1L (ENSCAFG00020014937) #31	RGS17 (ENSCAFG00020014939) #32	ENSCAFG00020014955	ENSCAFG00020014963	ENSCAFG00020014964	OPRM1 (ENSCAFG00020014975) #34	IPCEF1 (ENSCAFG00020014995) #35	CNKSR3 (ENSCAFG00020015015) #36	ENSCAFG00020015021	ENSCAFG00020015039
Dog	MODERN SPECIES		PCMT1 (ENSCAFG00845018925) #11	LRP11 (ENSCAFG00845019246) #12	ENSCAFG00845019312	ENSCAFG00845019515	ENSCAFG00845019534	ENSCAFG00845019584	PPP1R14C (ENSCAFG00845019656)	IYD (ENSCAFG00845019736) #14	PLEKHG1 (ENSCAFG00845019814) #15	MTHFD1L (ENSCAFG00845020116) #16	AKAP12 (ENSCAFG00845021174) #17	ZBTB2 (ENSCAFG00845021289) #18	RMND1 (ENSCAFG00845000007)	ARMT1 (ENSCAFG00845000014) #20	CCDC170 (ENSCAFG00845000020) #21	ESR1 (ENSCAFG00845000028) #22	SYNE1 (ENSCAFG00845000043) #23	ENSCAFG00845000071	MYCT1 (ENSCAFG00845000077) #26	VIP (ENSCAFG00845000085) #27	ENSCAFG00845000096	FBXO5 (ENSCAFG00845000104) #29	MTRF1L (ENSCAFG00845000120) #31	RGS17 (ENSCAFG00845000141) #32	OPRM1 (ENSCAFG00845000160) #34	CNKSR3 (ENSCAFG00845000205) #36	ENSCAFG00845000268	SCAF8 (ENSCAFG00845000294) #37	TIAM2 (ENSCAFG00845000411)	TFB1M (ENSCAFG00845000478)	CLDN20 (ENSCAFG00845000485)
Red fox	MODERN SPECIES	26	ENSVVUG00000005185 #12	ENSVVUG00000005187	ENSVVUG00000005191	ENSVVUG00000005195	PPP1R14C (ENSVVUG00000005202)	IYD (ENSVVUG00000005224) #14	PLEKHG1 (ENSVVUG00000005233) #15	ENSVVUG00000005287 #16	ENSVVUG00000005367 #16	AKAP12 (ENSVVUG00000006099) #17	ENSVVUG00000006108	ZBTB2 (ENSVVUG00000006110) #18	RMND1 (ENSVVUG00000006114)	ARMT1 (ENSVVUG00000006134) #20	CCDC170 (ENSVVUG00000006168) #21	ESR1 (ENSVVUG00000006190) #22	ENSVVUG00000006396 #23	ENSVVUG00000006984 #23	MYCT1 (ENSVVUG00000007392) #26	VIP (ENSVVUG00000007395) #27	ENSVVUG00000007408	FBXO5 (ENSVVUG00000007414) #29	RGS17 (ENSVVUG00000007424) #32	OPRM1 (ENSVVUG00000007466) #34	IPCEF1 (ENSVVUG00000007491) #35	CNKSR3 (ENSVVUG00000007515) #36	SCAF8 (ENSVVUG00000007532) #37
Caniformia_b	ANCESTRAL SPECIES	6	ENSGT00900000143690	ENSGT00390000004803 #10	ENSGT00950000183032.B.b.b #11	ENSGT00940000161275 #12	ENSGT01100000263517.b.d.m.a.a.a.a.c	ENSGT01100000263517.b.d.m.a.a.a.a.d.b	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023.b #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b.bc #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000154428.b #35	ENSGT00940000154428.a #36	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00950000183142.a.b.a.a	ENSGT00940000161252	ENSGT00940000160501	ENSGT00940000155634
Mustelinae	ANCESTRAL SPECIES	26	ENSGT01030000234610.a.b	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.u.a.b	ENSGT01100000263517.b.d.m.a.a.a.a.c.k	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.u.a.a.a	ENSGT01030000235909	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.u.b	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023.b #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b.bc #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000154428.b #35	ENSGT00940000154428.a #36	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00950000183142.a.b.a.a	ENSGT00940000161252	ENSGT00940000160501	ENSGT00940000155634
Ferret	MODERN SPECIES	201	ENSMPUG00000010376	ENSMPUG00000010380	ENSMPUG00000010393	ENSMPUG00000019141	IYD (ENSMPUG00000010397) #14	PLEKHG1 (ENSMPUG00000010404) #15	ENSMPUG00000010410	MTHFD1L (ENSMPUG00000010414) #16	ENSMPUG00000010428	ENSMPUG00000010433	AKAP12 (ENSMPUG00000010439) #17	ZBTB2 (ENSMPUG00000010444) #18	RMND1 (ENSMPUG00000010450)	ARMT1 (ENSMPUG00000010459) #20	CCDC170 (ENSMPUG00000010462) #21	ESR1 (ENSMPUG00000010481) #22	SYNE1 (ENSMPUG00000010485) #23	MYCT1 (ENSMPUG00000010542) #26	VIP (ENSMPUG00000010545) #27	FBXO5 (ENSMPUG00000010553) #29	MTRF1L (ENSMPUG00000010577) #31	RGS17 (ENSMPUG00000010584) #32
American mink	MODERN SPECIES	4	ENSNVIG00000006567	ENSNVIG00000006590	ENSNVIG00000006632	ENSNVIG00000006638	ENSNVIG00000006654	PPP1R14C (ENSNVIG00000006672)	IYD1 (ENSNVIG00000006683) #14	ENSNVIG00000006714	PLEKHG1 (ENSNVIG00000006728) #15	MTHFD1L (ENSNVIG00000006768) #16	AKAP12 (ENSNVIG00000006843) #17	ZBTB2 (ENSNVIG00000006849) #18	RMND1 (ENSNVIG00000006864)	ARMT1 (ENSNVIG00000006911) #20	CCDC170 (ENSNVIG00000006940) #21	ESR1 (ENSNVIG00000006962) #22	SYNE1 (ENSNVIG00000007105) #23	MYCT1 (ENSNVIG00000008075) #26	VIP (ENSNVIG00000008088) #27	FBXO5 (ENSNVIG00000008114) #29	MTRF1L (ENSNVIG00000008138) #31	RGS17 (ENSNVIG00000008185) #32	OPRM1 (ENSNVIG00000008214) #34	IPCEF1 (ENSNVIG00000008312) #35	CNKSR3 (ENSNVIG00000008386) #36	SCAF8 (ENSNVIG00000008452) #37	ENSNVIG00000008569	TFB1M (ENSNVIG00000008600)	CLD20 (ENSNVIG00000008611)	NOX3 (ENSNVIG00000008632)	ENSNVIG00000008662
Ursidae	ANCESTRAL SPECIES	22	ENSGT00940000157684 #9	ENSGT00900000143690	ENSGT00390000004803 #10	ENSGT00950000183032.B.b.b #11	ENSGT00940000161275 #12	ENSGT01100000263517.b.d.m.a.a.a.a.d.b	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023.b #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b.bc #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000154428.b #35	ENSGT00940000154428.a #36	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00950000183142.a.b.a.a	ENSGT00940000161252	ENSGT00940000160501	ENSGT00940000155634
Giant Panda	MODERN SPECIES	1	ENSAMEG00000029494	NUP43 (ENSAMEG00000018267) #10	PCMT1 (ENSAMEG00000018264) #11	LRP11 (ENSAMEG00000028001) #12	ENSAMEG00000018260	ENSAMEG00000027911	ENSAMEG00000003274 #14	PLEKHG1 (ENSAMEG00000003289) #15	ENSAMEG00000027298	MTHFD1L (ENSAMEG00000003323) #16	AKAP12 (ENSAMEG00000011101) #17	ZBTB2 (ENSAMEG00000023899) #18	RMND1 (ENSAMEG00000011087)	ARMT1 (ENSAMEG00000024514) #20	CCDC170 (ENSAMEG00000011074) #21	ESR1 (ENSAMEG00000011072) #22	SYNE1 (ENSAMEG00000010887) #23	MYCT1 (ENSAMEG00000025534) #26	VIP (ENSAMEG00000010871) #27	FBXO5 (ENSAMEG00000030250) #29	MTRF1L (ENSAMEG00000001252) #31	RGS17 (ENSAMEG00000001249) #32	OPRM1 (ENSAMEG00000010364) #34	IPCEF1 (ENSAMEG00000010361) #35	CNKSR3 (ENSAMEG00000007564) #36	SCAF8 (ENSAMEG00000007583) #37	TIAM2 (ENSAMEG00000012741)	TFB1M (ENSAMEG00000012761)	CLDN20 (ENSAMEG00000019340)	ENSAMEG00000012782	ENSAMEG00000024497
Ursus	ANCESTRAL SPECIES	117	ENSGT00390000008373 #7	ENSGT00940000156638 #8	ENSGT00940000157684 #9	ENSGT00390000004803 #10	ENSGT00950000183032.B.b.b #11	ENSGT00940000161275 #12	ENSGT01100000263517.b.d.m.a.a.a.a.d.b	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023.b #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b.bc #23	ENSGT00940000165162 #24	ENSGT00940000154481.a.b.ac.b #23	ENSGT00940000154481.a.b.ac.a #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27
Polar bear	MODERN SPECIES	190	ENSUMAG00000002760 #9	ENSUMAG00000002756 #9	NUP43 (ENSUMAG00000002752) #10	PCMT1 (ENSUMAG00000002747) #11	ENSUMAG00000002745 #12	ENSUMAG00000002741	IYD (ENSUMAG00000002727) #14	PLEKHG1 (ENSUMAG00000002715) #15	MTHFD1L (ENSUMAG00000002326) #16	ENSUMAG00000002250 #17	ZBTB2 (ENSUMAG00000002240) #18	RMND1 (ENSUMAG00000002220)	ENSUMAG00000002214 #20	ENSUMAG00000002206 #20	CCDC170 (ENSUMAG00000002190) #21	ENSUMAG00000002176 #22	ENSUMAG00000001138 #23	ENSUMAG00000000885 #24	ENSUMAG00000000085 #23	ENSUMAG00000024192 #23	MYCT1 (ENSUMAG00000024191) #26	VIP (ENSUMAG00000024190) #27
American black bear	MODERN SPECIES	2071																ESR1 (ENSUAMG00000005438) #22
Felidae	ANCESTRAL SPECIES	5	ENSGT00390000004803 #10	ENSGT00950000183032.B.b.b #11	ENSGT00940000161275 #12	ENSGT01100000263517.b.d.m.a.a.a.a.c	ENSGT01100000263517.b.d.m.a.a.a.a.d.b	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT01040000242984	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023.b #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b.bc #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000154428.b #35	ENSGT00940000154428.a #36	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00950000183142.a.b.a.a	ENSGT00940000161252	ENSGT00940000160501	ENSGT00940000155634
Cat	MODERN SPECIES	236	LRP11 (ENSFCAG00000045912) #12	ENSFCAG00000005672	ENSFCAG00000049506	ENSFCAG00000047793	PPP1R14C (ENSFCAG00000035894)	ENSFCAG00000023771	IYD (ENSFCAG00000003732) #14	ENSFCAG00000052538	PLEKHG1 (ENSFCAG00000029811) #15	MTHFD1L (ENSFCAG00000003673) #16	AKAP12 (ENSFCAG00000041794) #17	ZBTB2 (ENSFCAG00000040972) #18	RMND1 (ENSFCAG00000010205)	ARMT1 (ENSFCAG00000010206) #20	CCDC170 (ENSFCAG00000010207) #21	ESR1 (ENSFCAG00000031492) #22	SYNE1 (ENSFCAG00000000049) #23	MYCT1 (ENSFCAG00000028294) #26	VIP (ENSFCAG00000002179) #27	FBXO5 (ENSFCAG00000030126) #29	MTRF1L (ENSFCAG00000037854) #31	RGS17 (ENSFCAG00000037833) #32	OPRM1 (ENSFCAG00000005359) #34	IPCEF1 (ENSFCAG00000024018) #35	CNKSR3 (ENSFCAG00000005430) #36	ENSFCAG00000051585	SCAF8 (ENSFCAG00000023424) #37	TIAM2 (ENSFCAG00000006164)	TFB1M (ENSFCAG00000038785)	CLDN20 (ENSFCAG00000001805)	NOX3 (ENSFCAG00000006165)
Panthera	ANCESTRAL SPECIES	7	ENSGT00900000143690	ENSGT00390000004803 #10	ENSGT00950000183032.B.b.b #11	ENSGT00940000161275 #12	ENSGT01100000263517.b.d.m.a.a.a.a.c	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT01040000242984	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023.b #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b.bc #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000154428.b #35	ENSGT00940000154428.a #36	ENSGT00530000063946.b #37	ENSGT00940000157012.i	ENSGT00950000183142.a.b.a.a	ENSGT00940000161252	ENSGT00940000160501	ENSGT00390000005732.j
Panthera_a	ANCESTRAL SPECIES	4	ENSGT00900000143690	ENSGT00390000004803 #10	ENSGT00950000183032.B.b.b #11	ENSGT00940000161275 #12	ENSGT01100000263517.b.d.m.a.a.a.a.c	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT01040000242984	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023.b #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b.bc #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000154428.b #35	ENSGT00940000154428.a #36	ENSGT00530000063946.b #37	ENSGT00940000157012.i	ENSGT00950000183142.a.b.a.a	ENSGT00940000161252	ENSGT00940000160501	ENSGT00390000005732.j
lion	MODERN SPECIES	5	NUP43 (ENSPLOG00000021172) #10	PCMT1 (ENSPLOG00000021244) #11	LRP11 (ENSPLOG00000021323) #12	ENSPLOG00000021375	PPP1R14C (ENSPLOG00000021411)	ENSPLOG00000021433	IYD (ENSPLOG00000021448) #14	ENSPLOG00000021471	PLEKHG1 (ENSPLOG00000021507) #15	MTHFD1L (ENSPLOG00000021591) #16	AKAP12 (ENSPLOG00000000322) #17	ZBTB2 (ENSPLOG00000000341) #18	RMND1 (ENSPLOG00000000352)	ARMT1 (ENSPLOG00000000374) #20	CCDC170 (ENSPLOG00000000397) #21	ESR1 (ENSPLOG00000000444) #22	SYNE1 (ENSPLOG00000001040) #23	MYCT1 (ENSPLOG00000002023) #26	VIP (ENSPLOG00000002035) #27	ENSPLOG00000002097 #31	RGS17 (ENSPLOG00000002174) #32	OPRM1 (ENSPLOG00000002202) #34	IPCEF1 (ENSPLOG00000002238) #35	CNKSR3 (ENSPLOG00000002266) #36	SCAF8 (ENSPLOG00000002327) #37	ENSPLOG00000002566	TFB1M (ENSPLOG00000002619)	CLDN20 (ENSPLOG00000002628)	NOX3 (ENSPLOG00000002647)	ARID1B (ENSPLOG00000002708)	TMEM242 (ENSPLOG00000002788)
leopard	MODERN SPECIES	140						ENSPPRG00000008471	PPP1R14C (ENSPPRG00000008482)	IYD (ENSPPRG00000008491) #14	PLEKHG1 (ENSPPRG00000008781) #15	MTHFD1L (ENSPPRG00000009075) #16	AKAP12 (ENSPPRG00000009132) #17	ZBTB2 (ENSPPRG00000009222) #18	RMND1 (ENSPPRG00000009267)	ARMT1 (ENSPPRG00000009551) #20	CCDC170 (ENSPPRG00000009606) #21	ESR1 (ENSPPRG00000009745) #22	ENSPPRG00000009951 #23	ENSPPRG00000010874 #23	MYCT1 (ENSPPRG00000010948) #26	VIP (ENSPPRG00000010990) #27	FBXO5 (ENSPPRG00000011003) #29	MTRF1L (ENSPPRG00000011039) #31	RGS17 (ENSPPRG00000011102) #32
Tiger	MODERN SPECIES	551										MTHFD1L (ENSPTIG00000008995) #16	AKAP12 (ENSPTIG00000011299) #17	ZBTB2 (ENSPTIG00000012254) #18	RMND1 (ENSPTIG00000012455)	ARMT1 (ENSPTIG00000015245) #20	CCDC170 (ENSPTIG00000015972) #21	ENSPTIG00000006582 #22	ENSPTIG00000017043	ENSPTIG00000017428 #23	ENSPTIG00000003459 #23	MYCT1 (ENSPTIG00000019093) #26	VIP (ENSPTIG00000019361) #27	FBXO5 (ENSPTIG00000019781) #29	MTRF1L (ENSPTIG00000020019) #31	RGS17 (ENSPTIG00000004990) #32	OPRM1 (ENSPTIG00000006702) #34	IPCEF1 (ENSPTIG00000009006) #35	CNKSR3 (ENSPTIG00000012267) #36	SCAF8 (ENSPTIG00000014836) #37	ENSPTIG00000018691	TFB1M (ENSPTIG00000003540)	CLDN20 (ENSPTIG00000007262)
Laurasiatheria_c	ANCESTRAL SPECIES	6	ENSGT00900000143690	ENSGT00390000004803 #10	ENSGT00950000183032.B.b.b #11	ENSGT00940000161275 #12	ENSGT01100000263517.b.d.m.a.a.a.a.c	ENSGT01100000263517.b.d.m.a.a.a.a.d.b	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023.b #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b.bc #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000154428.b #35	ENSGT00940000154428.a #36	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00950000183142.a.b.a.a	ENSGT00940000161252	ENSGT00940000160501	ENSGT00940000155634
Chiroptera	ANCESTRAL SPECIES	3	ENSGT00900000143690	ENSGT00390000004803 #10	ENSGT00950000183032.B.b.b #11	ENSGT00940000161275 #12	ENSGT01100000263517.b.d.m.a.a.a.a.d.b	ENSGT01100000263517.b.d.m.a.a.a.a.c	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023.b #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b.bc #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000154428.b #35	ENSGT00940000154428.a #36	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00950000183142.a.b.a.a	ENSGT00940000161252	ENSGT00940000160501	ENSGT00940000155634
Microchiroptera	ANCESTRAL SPECIES	4	ENSGT00900000143690	ENSGT00390000004803 #10	ENSGT00950000183032.B.b.b #11	ENSGT00940000161275 #12	ENSGT01100000263517.b.d.m.a.a.a.a.d.b	ENSGT01100000263517.b.d.m.a.a.a.a.c	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023.b #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b.bc #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000154428.b #35	ENSGT00940000154428.a #36	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00950000183142.a.b.a.a	ENSGT00940000161252	ENSGT00940000160501	ENSGT00940000155634
Microbat	MODERN SPECIES	1342											AKAP12 (ENSMLUG00000001303) #17	ZBTB2 (ENSMLUG00000001314) #18	RMND1 (ENSMLUG00000011423)	ARMT1 (ENSMLUG00000014169) #20	CCDC170 (ENSMLUG00000014172) #21	ESR1 (ENSMLUG00000014181) #22	ENSMLUG00000023701 #23
Greater horseshoe bat	MODERN SPECIES	21	ENSRFEG00010015855	ENSRFEG00010015921	ENSRFEG00010016156	PPP1R14C (ENSRFEG00010016410)	IYD (ENSRFEG00010016480) #14	ENSRFEG00010016530	ENSRFEG00010016588	PLEKHG1 (ENSRFEG00010016656) #15	MTHFD1L (ENSRFEG00010016718) #16	ENSRFEG00010017181	AKAP12 (ENSRFEG00010017239) #17	ZBTB2 (ENSRFEG00010017257) #18	RMND1 (ENSRFEG00010017312)	ARMT1 (ENSRFEG00010017409) #20	CCDC170 (ENSRFEG00010017486) #21	ESR1 (ENSRFEG00010017671) #22	SYNE1 (ENSRFEG00010017835) #23	MYCT1 (ENSRFEG00010018323) #26	VIP (ENSRFEG00010018363) #27	ENSRFEG00010018375	ENSRFEG00010018397	FBXO5 (ENSRFEG00010018406) #29	MTRF1L (ENSRFEG00010018467) #31	RGS17 (ENSRFEG00010018529) #32	OPRM1 (ENSRFEG00010018574) #34	IPCEF1 (ENSRFEG00010018675) #35	ENSRFEG00010018693	CNKSR3 (ENSRFEG00010018738) #36	SCAF8 (ENSRFEG00010018868) #37	TIAM2 (ENSRFEG00010019501)	TFB1M (ENSRFEG00010019543)
Megabat	MODERN SPECIES	3578																ESR1 (ENSPVAG00000001923) #22	SYNE1 (ENSPVAG00000001924) #23	MYCT1 (ENSPVAG00000001928) #26	VIP (ENSPVAG00000001930) #27
Equus	ANCESTRAL SPECIES	46	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.bb.b	ENSGT01100000263517.b.d.m.a.a.a.a.c.o	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.cb	ENSGT01100000263517.b.d.m.a.a.a.a.c.p.a	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.bb.a.b	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.bb.a.a	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023.b #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b.bc #23	ENSGT00390000011642 #26	ENSGT01090000263352	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000154428.b #35	ENSGT00940000154428.a #36	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00940000161252	ENSGT00950000183142.a.b.a.a	ENSGT00940000160501
Horse	MODERN SPECIES	24	ENSECAG00000033237	ENSECAG00000047371	ENSECAG00000036563	ENSECAG00000003090	ENSECAG00000059096	ENSECAG00000037408	ENSECAG00000034476	IYD (ENSECAG00000018766) #14	PLEKHG1 (ENSECAG00000007095) #15	MTHFD1L (ENSECAG00000001166) #16	AKAP12 (ENSECAG00000022166) #17	ZBTB2 (ENSECAG00000021762) #18	RMND1 (ENSECAG00000018207)	ARMT1 (ENSECAG00000015349) #20	CCDC170 (ENSECAG00000013130) #21	ESR1 (ENSECAG00000022441) #22	SYNE1 (ENSECAG00000017353) #23	ENSECAG00000057509 #23	MYCT1 (ENSECAG00000015960) #26	ENSECAG00000059138	VIP (ENSECAG00000013586) #27	FBXO5 (ENSECAG00000011630) #29	MTRF1L (ENSECAG00000002759) #31	RGS17 (ENSECAG00000022231) #32	OPRM1 (ENSECAG00000013458) #34	IPCEF1 (ENSECAG00000003511) #35	CNKSR3 (ENSECAG00000019241) #36	SCAF8 (ENSECAG00000005540) #37	ENSECAG00000044412	TIAM2 (ENSECAG00000023722)	CLDN20 (ENSECAG00000005339)
Donkey	MODERN SPECIES	20	ENSEASG00005023074	PPIF (ENSEASG00005032195)	ZMIZ1 (ENSEASG00005023063)	ENSEASG00005023056	POLR3A (ENSEASG00005023053)	DLG5 (ENSEASG00005023049)	ENSEASG00005023024	ENSEASG00005016792 #14	ENSEASG00005016807 #15	MTHFD1L (ENSEASG00005017019) #16	AKAP12 (ENSEASG00005018740) #17	ZBTB2 (ENSEASG00005018742) #18	RMND1 (ENSEASG00005018744)	ARMT1 (ENSEASG00005031339) #20	CCDC170 (ENSEASG00005018748) #21	ESR1 (ENSEASG00005018755) #22	ENSEASG00005018807 #23	ENSEASG00005018835 #23	MYCT1 (ENSEASG00005031624) #26	ENSEASG00005037232	VIP (ENSEASG00005018861) #27	FBXO5 (ENSEASG00005018864) #29	MTRF1L (ENSEASG00005018866) #31	RGS17 (ENSEASG00005018868) #32	OPRM1 (ENSEASG00005018870) #34	IPCEF1 (ENSEASG00005018872) #35	CNKSR3 (ENSEASG00005018876) #36	SCAF8 (ENSEASG00005018879) #37	TIAM2 (ENSEASG00005018884)	ENSEASG00005031064	TFB1M (ENSEASG00005018887)
Artiodactyla	ANCESTRAL SPECIES	19	ENSGT00900000143690	ENSGT00390000004803 #10	ENSGT00950000183032.B.b.b #11	ENSGT00940000161275 #12	ENSGT01100000263517.b.d.m.a.a.a.a.c	ENSGT01100000263517.b.d.m.a.a.a.a.d.b	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023.b #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b.bc #23	ENSGT00940000174968	ENSGT00940000165162 #24	ENSGT00940000154481.a.b.ac.a #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000154428.b #35	ENSGT00940000154428.a #36	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00950000183142.a.b.a.a
Suina	ANCESTRAL SPECIES	18	ENSGT00900000143690	ENSGT00390000004803.f #10	ENSGT00950000183032.B.b.b #11	ENSGT00940000161275 #12	ENSGT01100000263517.b.d.m.a.a.a.a.c	ENSGT01100000263517.b.d.m.a.a.a.a.d.b	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023.b #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b.bc #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000154428.b #35	ENSGT00940000154428.a #36	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00940000161252	ENSGT00950000183142.a.b.a.a	ENSGT00940000160501	ENSGT00940000155634
Pig	MODERN SPECIES		ENSSSCG00000004096	ENSSSCG00000033578	ENSSSCG00000032525	ENSSSCG00000035574	PPP1R14C (ENSSSCG00000004094)	IYD (ENSSSCG00000004093) #14	ENSSSCG00000040966	PLEKHG1 (ENSSSCG00000032778) #15	MTHFD1L (ENSSSCG00000004092) #16	AKAP12 (ENSSSCG00000031733) #17	ZBTB2 (ENSSSCG00000004090) #18	RMND1 (ENSSSCG00000004089)	ARMT1 (ENSSSCG00000004088) #20	CCDC170 (ENSSSCG00000004087) #21	ENSSSCG00000046251	ESR1 (ENSSSCG00000025777) #22	ENSSSCG00000004082 #23	ENSSSCG00000049158 #24	ENSSSCG00000004081 #23	MYCT1 (ENSSSCG00000031536) #26	VIP (ENSSSCG00000004078) #27	FBXO5 (ENSSSCG00000004077) #29	MTRF1L (ENSSSCG00000004076) #31	RGS17 (ENSSSCG00000004075) #32	OPRM1 (ENSSSCG00000004074) #34	IPCEF1 (ENSSSCG00000046319) #35	CNKSR3 (ENSSSCG00000004071) #36	SCAF8 (ENSSSCG00000004070) #37	TIAM2 (ENSSSCG00000004065)	CLDN20 (ENSSSCG00000063189)	TFB1M (ENSSSCG00000024361)
Chacoan peccary	MODERN SPECIES	58	NUP43 (ENSCWAG00000000291) #10	PCMT1 (ENSCWAG00000000240) #11	LRP11 (ENSCWAG00000000182) #12	ENSCWAG00000000157	ENSCWAG00000000130	ENSCWAG00000000084	PPP1R14C (ENSCWAG00000000064)	IYD (ENSCWAG00000000052) #14	PLEKHG1 (ENSCWAG00000000019) #15	MTHFD1L (ENSCWAG00000000009) #16	AKAP12 (ENSCWAG00000008834) #17	ZBTB2 (ENSCWAG00000008811) #18	RMND1 (ENSCWAG00000008762)	ARMT1 (ENSCWAG00000008701) #20	CCDC170 (ENSCWAG00000008566) #21	ESR1 (ENSCWAG00000008426) #22	SYNE1 (ENSCWAG00000005922) #23	MYCT1 (ENSCWAG00000005709) #26	VIP (ENSCWAG00000005683) #27	FBXO5 (ENSCWAG00000005639) #29	MTRF1L (ENSCWAG00000005591) #31	RGS17 (ENSCWAG00000005553) #32	IPCEF1 (ENSCWAG00000005502) #35	OPRM1 (ENSCWAG00000005403) #34	CNKSR3 (ENSCWAG00000005331) #36	SCAF8 (ENSCWAG00000005122) #37	ENSCWAG00000005054	TIAM2 (ENSCWAG00000004753)	CLDN20 (ENSCWAG00000004706)	TFB1M (ENSCWAG00000004677)	NOX3 (ENSCWAG00000004615)
Artiodactyla_a	ANCESTRAL SPECIES	21	ENSGT00900000143690	ENSGT00390000004803 #10	ENSGT00950000183032.B.b.b #11	ENSGT00940000161275 #12	ENSGT01100000263517.b.d.m.a.a.a.a.c	ENSGT01100000263517.b.d.m.a.a.a.a.d.b	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023.b #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b.bc #23	ENSGT00940000174968	ENSGT00940000165162 #24	ENSGT00940000154481.a.b.ac.a #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000154428.b #35	ENSGT00940000154428.a #36	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00950000183142.a.b.a.a
Camelidae	ANCESTRAL SPECIES	37	ENSGT00900000143690	ENSGT00390000004803 #10	ENSGT00950000183032.B.b.b #11	ENSGT00940000161275 #12	ENSGT01100000263517.b.d.m.a.a.a.a.c	ENSGT01100000263517.b.d.m.a.a.a.a.d.b	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023.b #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b.bc #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000154428.b #35	ENSGT00940000154428.a #36	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00940000161252	ENSGT00950000183142.a.b.a.a	ENSGT00940000160501	ENSGT00940000155634
Alpaca	MODERN SPECIES	3127																ESR1 (ENSVPAG00000001185) #22	SYNE1 (ENSVPAG00000001186) #23	MYCT1 (ENSVPAG00000001188) #26	VIP (ENSVPAG00000001189) #27	FBXO5 (ENSVPAG00000001190) #29	MTRF1L (ENSVPAG00000001191) #31	RGS17 (ENSVPAG00000001192) #32	OPRM1 (ENSVPAG00000001193) #34	IPCEF1 (ENSVPAG00000001194) #35
Arabian camel	DUPLICATION
Arabian camel	MODERN SPECIES	34	NUP43 (ENSCDRG00005020981) #10	PCMT1 (ENSCDRG00005020971) #11	LRP11 (ENSCDRG00005020953) #12	ENSCDRG00005020939	ENSCDRG00005020920	PPP1R14C (ENSCDRG00005020905)	IYD (ENSCDRG00005020897) #14	PLEKHG1 (ENSCDRG00005020866) #15	MTHFD1L (ENSCDRG00005020831) #16	AKAP12 (ENSCDRG00005020815) #17	ZBTB2 (ENSCDRG00005020809) #18	RMND1 (ENSCDRG00005020798)	ARMT1 (ENSCDRG00005020788) #20	CCDC170 (ENSCDRG00005020784) #21	ENSCDRG00005020779 #22	ENSCDRG00005020770 #22	SYNE1 (ENSCDRG00005019486) #23	MYCT1 (ENSCDRG00005019378) #26	VIP (ENSCDRG00005019356) #27	FBXO5 (ENSCDRG00005019337) #29	MTRF1L (ENSCDRG00005019302) #31	RGS17 (ENSCDRG00005019286) #32	OPRM1 (ENSCDRG00005019256) #34	IPCEF1 (ENSCDRG00005019172) #35	CNKSR3 (ENSCDRG00005019125) #36	SCAF8 (ENSCDRG00005018900) #37	TIAM2 (ENSCDRG00005018842)	CLDN20 (ENSCDRG00005018827)	TFB1M (ENSCDRG00005018794)	NOX3 (ENSCDRG00005018725)	ARID1B (ENSCDRG00005018236)
Arabian camel	MODERN SPECIES	34	ENSCDRG00005020991	NUP43 (ENSCDRG00005020981) #10	PCMT1 (ENSCDRG00005020971) #11	LRP11 (ENSCDRG00005020953) #12	ENSCDRG00005020939	ENSCDRG00005020920	PPP1R14C (ENSCDRG00005020905)	IYD (ENSCDRG00005020897) #14	PLEKHG1 (ENSCDRG00005020866) #15	MTHFD1L (ENSCDRG00005020831) #16	AKAP12 (ENSCDRG00005020815) #17	ZBTB2 (ENSCDRG00005020809) #18	RMND1 (ENSCDRG00005020798)	ARMT1 (ENSCDRG00005020788) #20	CCDC170 (ENSCDRG00005020784) #21	ENSCDRG00005020779 #22	ENSCDRG00005020770 #22	SYNE1 (ENSCDRG00005019486) #23	MYCT1 (ENSCDRG00005019378) #26	VIP (ENSCDRG00005019356) #27	FBXO5 (ENSCDRG00005019337) #29	MTRF1L (ENSCDRG00005019302) #31	RGS17 (ENSCDRG00005019286) #32	OPRM1 (ENSCDRG00005019256) #34	IPCEF1 (ENSCDRG00005019172) #35	CNKSR3 (ENSCDRG00005019125) #36	SCAF8 (ENSCDRG00005018900) #37	TIAM2 (ENSCDRG00005018842)	CLDN20 (ENSCDRG00005018827)	TFB1M (ENSCDRG00005018794)	NOX3 (ENSCDRG00005018725)
Artiodactyla_b	ANCESTRAL SPECIES	18	ENSGT00390000004803 #10	ENSGT00950000183032.B.b.b #11	ENSGT00940000161275 #12	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.lb.b	ENSGT01100000263517.b.d.m.a.a.a.a.c	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.mb	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023.b #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b.bc #23	ENSGT00940000174968	ENSGT00940000165162 #24	ENSGT00940000154481.a.b.ac.a #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000154428.b #35	ENSGT00940000154428.a #36	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00950000183142.a.b.a.a
Cetacea	ANCESTRAL SPECIES	18	ENSGT00900000143690	ENSGT00390000004803 #10	ENSGT00950000183032.B.b.b #11	ENSGT00940000161275 #12	ENSGT00950000185143	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.lb.a	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023.b #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b.bc #23	ENSGT00940000165162 #24	ENSGT00940000154481.a.b.ac.a #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000154428.b #35	ENSGT00940000154428.a #36	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00950000183142.a.b.a.a	ENSGT00940000161252
Odontoceti	ANCESTRAL SPECIES	18	ENSGT00900000143690	ENSGT00390000004803 #10	ENSGT00950000183032.B.b.b #11	ENSGT00940000161275 #12	ENSGT00950000185143	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.lb.a	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023.b #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b.bc #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000154428.b #35	ENSGT00940000154428.a #36	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00950000183142.a.b.a.a	ENSGT00940000161252	ENSGT00940000160501	ENSGT00940000155634
Odontoceti_a	ANCESTRAL SPECIES	16	ENSGT00900000143690	ENSGT00390000004803 #10	ENSGT00950000183032.B.b.b #11	ENSGT00940000161275 #12	ENSGT00950000185143	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.lb.a	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023.b #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b.bc #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000154428.b #35	ENSGT00940000154428.a #36	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00950000183142.a.b.a.a.e	ENSGT00940000161252	ENSGT00940000160501	ENSGT00940000155634
Odontoceti_b	ANCESTRAL SPECIES	18	ENSGT00940000157684 #9	ENSGT00900000143690	ENSGT00390000004803 #10	ENSGT00950000183032.B.b.b #11	ENSGT00940000161275 #12	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.lb.a	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023.b #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT01010000228886	ENSGT00940000154481.a.b.bc #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000154428.b #35	ENSGT00940000154428.a #36	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00950000183142.a.b.a.a.e	ENSGT00940000161252	ENSGT00940000160501
Monodontidae	ANCESTRAL SPECIES	18	ENSGT00940000157684 #9	ENSGT00900000143690	ENSGT00390000004803 #10	ENSGT00950000183032.B.b.b #11	ENSGT00940000161275 #12	ENSGT00950000185143	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023.b #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT01010000228886	ENSGT00940000154481.a.b.bc #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000154428.b #35	ENSGT00940000154428.a #36	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00950000183142.a.b.a.a.e	ENSGT00940000161252	ENSGT00940000160501
Beluga whale	MODERN SPECIES	80	LATS1 (ENSDLEG00000008906) #9	ENSDLEG00000008938	NUP43 (ENSDLEG00000008958) #10	PCMT1 (ENSDLEG00000008988) #11	LRP11 (ENSDLEG00000009046) #12	ENSDLEG00000009098	ENSDLEG00000009118	IYD (ENSDLEG00000009156) #14	PLEKHG1 (ENSDLEG00000009309) #15	MTHFD1L (ENSDLEG00000009381) #16	AKAP12 (ENSDLEG00000009611) #17	ZBTB2 (ENSDLEG00000009640) #18	RMND1 (ENSDLEG00000009657)	ARMT1 (ENSDLEG00000009691) #20	CCDC170 (ENSDLEG00000009713) #21	ESR1 (ENSDLEG00000009792) #22	ENSDLEG00000009813	SYNE1 (ENSDLEG00000010092) #23	MYCT1 (ENSDLEG00000012183) #26	VIP (ENSDLEG00000012194) #27	FBXO5 (ENSDLEG00000012221) #29	MTRF1L (ENSDLEG00000012260) #31	RGS17 (ENSDLEG00000012267) #32	ENSDLEG00000012302	OPRM1 (ENSDLEG00000012316) #34	IPCEF1 (ENSDLEG00000012349) #35	CNKSR3 (ENSDLEG00000012362) #36	SCAF8 (ENSDLEG00000012389) #37	TIAM2 (ENSDLEG00000012451)	TFB1M (ENSDLEG00000012467)	CLDN20 (ENSDLEG00000012472)
Narwhal	MODERN SPECIES	301	KATNA1 (ENSMMNG00015009407) #8	LATS1 (ENSMMNG00015009427) #9	ENSMMNG00015009437	NUP43 (ENSMMNG00015009446) #10	PCMT1 (ENSMMNG00015009476) #11	LRP11 (ENSMMNG00015009513) #12	ENSMMNG00015009542	PPP1R14C (ENSMMNG00015009544)	IYD (ENSMMNG00015009560) #14	PLEKHG1 (ENSMMNG00015009571) #15	MTHFD1L (ENSMMNG00015009588) #16	AKAP12 (ENSMMNG00015009623) #17	ZBTB2 (ENSMMNG00015009627) #18	RMND1 (ENSMMNG00015009633)	ARMT1 (ENSMMNG00015009647) #20	ESR1 (ENSMMNG00015009658) #22	ENSMMNG00015009668	SYNE1 (ENSMMNG00015009727) #23	MYCT1 (ENSMMNG00015009810) #26	VIP (ENSMMNG00015009820) #27	FBXO5 (ENSMMNG00015009826) #29	MTRF1L (ENSMMNG00015009848) #31	RGS17 (ENSMMNG00015009868) #32	OPRM1 (ENSMMNG00015009889) #34	IPCEF1 (ENSMMNG00015009907) #35	CNKSR3 (ENSMMNG00015009927) #36	SCAF8 (ENSMMNG00015009985) #37	TIAM2 (ENSMMNG00015010117)	ENSMMNG00015010231	CLDN20 (ENSMMNG00015010248)	NOX3 (ENSMMNG00015010259)
Vaquita	MODERN SPECIES	3	LATS1 (ENSPSNG00000010422) #9	ENSPSNG00000010371	NUP43 (ENSPSNG00000010302) #10	PCMT1 (ENSPSNG00000010042) #11	LRP11 (ENSPSNG00000009810) #12	ENSPSNG00000009584	PPP1R14C (ENSPSNG00000022573)	IYD (ENSPSNG00000022571) #14	PLEKHG1 (ENSPSNG00000022563) #15	MTHFD1L (ENSPSNG00000022543) #16	AKAP12 (ENSPSNG00000022535) #17	ZBTB2 (ENSPSNG00000022533) #18	RMND1 (ENSPSNG00000022531)	ARMT1 (ENSPSNG00000022528) #20	ENSPSNG00000022515	ESR1 (ENSPSNG00000022511) #22	ENSPSNG00000022502	SYNE1 (ENSPSNG00000022337) #23	MYCT1 (ENSPSNG00000022131) #26	VIP (ENSPSNG00000022117) #27	FBXO5 (ENSPSNG00000022107) #29	MTRF1L (ENSPSNG00000022083) #31	RGS17 (ENSPSNG00000022062) #32	OPRM1 (ENSPSNG00000022034) #34	IPCEF1 (ENSPSNG00000021988) #35	CNKSR3 (ENSPSNG00000021935) #36	SCAF8 (ENSPSNG00000021822) #37	TIAM2 (ENSPSNG00000021646)	CLDN20 (ENSPSNG00000021584)	ENSPSNG00000021564	NOX3 (ENSPSNG00000021516)
Dolphin	MODERN SPECIES	2869																ESR1 (ENSTTRG00000002996) #22	SYNE1 (ENSTTRG00000002999) #23	MYCT1 (ENSTTRG00000003014) #26
Sperm whale	MODERN SPECIES	1	ENSPCTG00005007144	NUP43 (ENSPCTG00005007117) #10	PCMT1 (ENSPCTG00005007055) #11	ENSPCTG00005007010 #12	ENSPCTG00005006995	PPP1R14C (ENSPCTG00005006973)	IYD (ENSPCTG00005006834) #14	PLEKHG1 (ENSPCTG00005006762) #15	MTHFD1L (ENSPCTG00005006289) #16	AKAP12 (ENSPCTG00005006212) #17	ZBTB2 (ENSPCTG00005006183) #18	RMND1 (ENSPCTG00005006136)	ARMT1 (ENSPCTG00005006118) #20	CCDC170 (ENSPCTG00005006069) #21	ENSPCTG00005006030	ESR1 (ENSPCTG00005005962) #22	SYNE1 (ENSPCTG00005005794) #23	ENSPCTG00005005713 #23	ENSPCTG00005005623 #23	MYCT1 (ENSPCTG00005005562) #26	VIP (ENSPCTG00005005536) #27	FBXO5 (ENSPCTG00005005511) #29	MTRF1L (ENSPCTG00005005476) #31	RGS17 (ENSPCTG00005005451) #32	OPRM1 (ENSPCTG00005005408) #34	IPCEF1 (ENSPCTG00005005351) #35	CNKSR3 (ENSPCTG00005005282) #36	SCAF8 (ENSPCTG00005004842) #37	CLDN20 (ENSPCTG00005004774)	TFB1M (ENSPCTG00005004760)	NOX3 (ENSPCTG00005004723)
Blue whale	MODERN SPECIES	3	NUP43 (ENSBMSG00010010153) #10	PCMT1 (ENSBMSG00010010090) #11	LRP11 (ENSBMSG00010010034) #12	ENSBMSG00010010009	ENSBMSG00010009982	ENSBMSG00010009953	ENSBMSG00010009935	IYD (ENSBMSG00010009876) #14	PLEKHG1 (ENSBMSG00010009838) #15	MTHFD1L (ENSBMSG00010009772) #16	AKAP12 (ENSBMSG00010009739) #17	ZBTB2 (ENSBMSG00010009731) #18	RMND1 (ENSBMSG00010009721)	ARMT1 (ENSBMSG00010009705) #20	CCDC170 (ENSBMSG00010009670) #21	ESR1 (ENSBMSG00010009630) #22	ENSBMSG00010009590 #23	ENSBMSG00010009558 #23	ENSBMSG00010009535 #24	ENSBMSG00010009099 #23	MYCT1 (ENSBMSG00010008945) #26	VIP (ENSBMSG00010008935) #27	FBXO5 (ENSBMSG00010008916) #29	MTRF1L (ENSBMSG00010008898) #31	RGS17 (ENSBMSG00010008878) #32	OPRM1 (ENSBMSG00010008836) #34	IPCEF1 (ENSBMSG00010008800) #35	CNKSR3 (ENSBMSG00010008753) #36	ENSBMSG00010008722	SCAF8 (ENSBMSG00010008649) #37	TIAM2 (ENSBMSG00010008560)
Pecora	ANCESTRAL SPECIES	19	ENSGT00940000161275 #12	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.lb.a.b	ENSGT01100000263517.b.d.m.a.a.a.a.c	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.mb.b	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.lb.b	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.mb.a	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023.b #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b.bc #23	ENSGT00940000174968	ENSGT00940000165162 #24	ENSGT00940000154481.a.b.ac.a #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000154428.b #35	ENSGT00940000154428.a #36	ENSGT00530000063946.b #37	ENSGT00940000161394.m.a	ENSGT00940000157012
Yarkand deer	MODERN SPECIES	18	ENSCHYG00000024023	ENSCHYG00000024059	ENSCHYG00000024218	ENSCHYG00000024396	ENSCHYG00000024426	PPP1R14C (ENSCHYG00000024443)	IYD (ENSCHYG00000024472) #14	PLEKHG1 (ENSCHYG00000024587) #15	ENSCHYG00000024716	MTHFD1L (ENSCHYG00000024773) #16	AKAP12 (ENSCHYG00000025364) #17	ZBTB2 (ENSCHYG00000025392) #18	RMND1 (ENSCHYG00000025421)	ARMT1 (ENSCHYG00000025462) #20	CCDC170 (ENSCHYG00000025505) #21	ESR1 (ENSCHYG00000025561) #22	SYNE1 (ENSCHYG00000025778) #23	MYCT1 (ENSCHYG00000026747) #26	VIP (ENSCHYG00000026757) #27	FBXO5 (ENSCHYG00000026768) #29	ENSCHYG00000026781 #31	RGS17 (ENSCHYG00000026801) #32	ENSCHYG00000026812	OPRM1 (ENSCHYG00000026823) #34	IPCEF1 (ENSCHYG00000026833) #35	CNKSR3 (ENSCHYG00000026849) #36	SCAF8 (ENSCHYG00000026866) #37	ENSCHYG00000026877	TIAM2 (ENSCHYG00000026882)	TFB1M (ENSCHYG00000026906)	CLDN20 (ENSCHYG00000026915)
Percora_a	ANCESTRAL SPECIES	21	ENSGT01100000263517.b.d.m.a.a.a.a.c.g	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.lb.a.b	ENSGT01100000263517.b.d.m.a.a.a.a.c.h	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.mb.b	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.lb.b	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.mb.a	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023.b #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b.bc #23	ENSGT00940000174968	ENSGT00940000165162 #24	ENSGT00940000154481.a.b.ac.a #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000154428.b #35	ENSGT00940000154428.a #36	ENSGT00530000063946.b #37	ENSGT00940000161394.m.a	ENSGT00940000157012
Siberian musk deer	MODERN SPECIES	60	ENSMMSG00000003875	ENSMMSG00000003889	ENSMMSG00000003897	ENSMMSG00000003903	PPP1R14C (ENSMMSG00000003908)	IYD (ENSMMSG00000003954) #14	PLEKHG1 (ENSMMSG00000004000) #15	ENSMMSG00000004073	MTHFD1L (ENSMMSG00000004101) #16	AKAP12 (ENSMMSG00000004153) #17	ZBTB2 (ENSMMSG00000004198) #18	RMND1 (ENSMMSG00000004210)	ARMT1 (ENSMMSG00000004226) #20	CCDC170 (ENSMMSG00000004253) #21	ENSMMSG00000004280	ESR1 (ENSMMSG00000004298) #22	SYNE1 (ENSMMSG00000004396) #23	MYCT1 (ENSMMSG00000004698) #26	VIP (ENSMMSG00000004730) #27	FBXO5 (ENSMMSG00000004752) #29	MTRF1L (ENSMMSG00000004788) #31	RGS17 (ENSMMSG00000004836) #32	OPRM1 (ENSMMSG00000004891) #34	IPCEF1 (ENSMMSG00000005110) #35	CNKSR3 (ENSMMSG00000000117) #36	SCAF8 (ENSMMSG00000000189) #37
Bovidae	ANCESTRAL SPECIES	21	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.lb.a.b	ENSGT01100000263517.b.d.m.a.a.a.a.c.g	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.lb.b	ENSGT01100000263517.b.d.m.a.a.a.a.c.h	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.mb.b	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.mb.a	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023.b #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b.bc #23	ENSGT00940000174968	ENSGT00940000165162 #24	ENSGT00940000154481.a.b.ac.a #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000154428.b #35	ENSGT00940000154428.a #36	ENSGT00530000063946.b #37	ENSGT00940000161394.m.a	ENSGT00940000157012
Caprinae	ANCESTRAL SPECIES		ENSGT00950000183032.B.b.b #11	ENSGT00940000161275 #12	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.lb.b.c.b.a	ENSGT00950000185143.a	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.mb.b.d	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.mb.a	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023.b #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b.bc #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000154428.b #35	ENSGT00940000154428.a #36	ENSGT00530000063946.b #37	ENSGT00940000161394.m.a	ENSGT00940000157012	ENSGT00950000183142.a.b.a.a	ENSGT00940000161252	ENSGT00940000160501
Rambouillet Sheep	MODERN SPECIES	24	ENSOARG00020020509	ENSOARG00020020751	ENSOARG00020020776	ENSOARG00020020849	ENSOARG00020020885	ENSOARG00020020931	PPP1R14C (ENSOARG00020020977)	IYD (ENSOARG00020021015) #14	PLEKHG1 (ENSOARG00020021072) #15	MTHFD1L (ENSOARG00020021229) #16	AKAP12 (ENSOARG00020021809) #17	ZBTB2 (ENSOARG00020021872) #18	RMND1 (ENSOARG00020021897)	ARMT1 (ENSOARG00020021948) #20	CCDC170 (ENSOARG00020021972) #21	ESR1 (ENSOARG00020022045) #22	SYNE1 (ENSOARG00020022335) #23	MYCT1 (ENSOARG00020024842) #26	VIP (ENSOARG00020024851) #27	FBXO5 (ENSOARG00020024869) #29	MTRF1L (ENSOARG00020024904) #31	RGS17 (ENSOARG00020024922) #32	ENSOARG00020024931	OPRM1 (ENSOARG00020024943) #34	IPCEF1 (ENSOARG00020024992) #35	CNKSR3 (ENSOARG00020025010) #36	ENSOARG00020025048	ENSOARG00020025060	ENSOARG00020025094	SCAF8 (ENSOARG00020025109) #37	ENSOARG00020025142
Goat	MODERN SPECIES	28	ENSCHIG00000009129	ENSCHIG00000008160	ENSCHIG00000019400 #12	ENSCHIG00000009062 #12	ENSCHIG00000025529	ENSCHIG00000023203	PPP1R14C (ENSCHIG00000026590)	IYD (ENSCHIG00000026899) #14	PLEKHG1 (ENSCHIG00000011933) #15	MTHFD1L (ENSCHIG00000026337) #16	AKAP12 (ENSCHIG00000013493) #17	ZBTB2 (ENSCHIG00000023404) #18	RMND1 (ENSCHIG00000013571)	ARMT1 (ENSCHIG00000024403) #20	CCDC170 (ENSCHIG00000015746) #21	ESR1 (ENSCHIG00000014058) #22	ENSCHIG00000022719	ENSCHIG00000017428	SYNE1 (ENSCHIG00000016453) #23	MYCT1 (ENSCHIG00000027092) #26	VIP (ENSCHIG00000015334) #27	ENSCHIG00000018470	FBXO5 (ENSCHIG00000026682) #29	MTRF1L (ENSCHIG00000007830) #31	RGS17 (ENSCHIG00000018427) #32	ENSCHIG00000006774	ENSCHIG00000012665	OPRM1 (ENSCHIG00000017379) #34	IPCEF1 (ENSCHIG00000004099) #35	CNKSR3 (ENSCHIG00000003272) #36	ENSCHIG00000024852
Bovinae	ANCESTRAL SPECIES	35	ENSGT00950000183032.B.b.b #11	ENSGT00940000161275 #12	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.lb.a.b.a	ENSGT00950000185143.a	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.mb.b.f	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.mb.a.a	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023.b #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b.bc #23	ENSGT00940000174968	ENSGT00940000165162 #24	ENSGT00940000154481.a.b.ac.a #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000154428.b #35	ENSGT00940000154428.a #36	ENSGT00950000182802.B.a.a.a.a.i.d	ENSGT00530000063946.b #37	ENSGT00940000161394.m.a
American bison	MODERN SPECIES	3071					ENSBBBG00000012889	ENSBBBG00000012884	ENSBBBG00000012881	IYD (ENSBBBG00000012867) #14	PLEKHG1 (ENSBBBG00000001747) #15	MTHFD1L (ENSBBBG00000002508) #16	AKAP12 (ENSBBBG00000008737) #17	ZBTB2 (ENSBBBG00000012799) #18	RMND1 (ENSBBBG00000012797)	ARMT1 (ENSBBBG00000012777) #20	CCDC170 (ENSBBBG00000012772) #21	ENSBBBG00000008109 #22	SYNE1 (ENSBBBG00000012707) #23	MYCT1 (ENSBBBG00000012062) #26	VIP (ENSBBBG00000012054) #27	FBXO5 (ENSBBBG00000012046) #29	MTRF1L (ENSBBBG00000012041) #31	RGS17 (ENSBBBG00000002257) #32	OPRM1 (ENSBBBG00000012004) #34	IPCEF1 (ENSBBBG00000011980) #35	CNKSR3 (ENSBBBG00000011968) #36	ENSBBBG00000011959	SCAF8 (ENSBBBG00000002232) #37	ENSBBBG00000001962	TIAM2 (ENSBBBG00000002224)	TFB1M (ENSBBBG00000011905)	CLDN20 (ENSBBBG00000011901)
Bos	ANCESTRAL SPECIES	19	ENSGT00950000183032.B.b.b #11	ENSGT00940000161275 #12	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.lb.a.b.a	ENSGT00390000004348 #14	ENSGT00950000182985.b.a	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.mb.a.a	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.mb.b.e	ENSGT01100000263517.b.d.m.a.a.a.a.c.h.a	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023.b #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b.bc #23	ENSGT00940000174968	ENSGT00940000165162 #24	ENSGT00940000154481.a.b.ac.a #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000154428.b #35	ENSGT00940000154428.a #36	ENSGT00950000182802.B.a.a.a.a.i.d	ENSGT00530000063946.b #37	ENSGT00940000161394.m.a
Bos_b	ANCESTRAL SPECIES	42				ENSGT00390000004348 #14	ENSGT00950000182985.b.a	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.mb.a.a	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.mb.b.e.a	ENSGT01100000263517.b.d.m.a.a.a.a.c.h.a	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023.b #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b.bc #23	ENSGT00940000165162 #24	ENSGT00940000154481.a.b.ac.a #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000154428.b #35	ENSGT00940000154428.a #36	ENSGT00950000182802.B.a.a.a.a.i.d	ENSGT00740000117156.b.e.a	ENSGT00530000063946.b #37	ENSGT00940000161394.m.a
Cow	MODERN SPECIES	28	ULBP17 (ENSBTAG00000024751)	ENSBTAG00000036061	ENSBTAG00000050143	RAET1G (ENSBTAG00000039329)	PPP1R14C (ENSBTAG00000026586)	IYD (ENSBTAG00000015935) #14	ENSBTAG00000048114	PLEKHG1 (ENSBTAG00000009679) #15	MTHFD1L (ENSBTAG00000009846) #16	AKAP12 (ENSBTAG00000014788) #17	ZBTB2 (ENSBTAG00000014790) #18	RMND1 (ENSBTAG00000013224)	ARMT1 (ENSBTAG00000004098) #20	ENSBTAG00000006398	CCDC170 (ENSBTAG00000004099) #21	ESR1 (ENSBTAG00000007159) #22	SYNE1 (ENSBTAG00000009362) #23	ENSBTAG00000052949 #23	ENSBTAG00000054309 #24	ENSBTAG00000052173 #23	ENSBTAG00000054597 #23	MYCT1 (ENSBTAG00000043975) #26	VIP (ENSBTAG00000013400) #27	FBXO5 (ENSBTAG00000021193) #29	MTRF1L (ENSBTAG00000009275) #31	RGS17 (ENSBTAG00000009277) #32	OPRM1 (ENSBTAG00000019719) #34	IPCEF1 (ENSBTAG00000003489) #35	CNKSR3 (ENSBTAG00000012674) #36	ENSBTAG00000020723	ENSBTAG00000049872
Hybrid Bos Indicus	MODERN SPECIES	28	ENSBIXG00005003594	ENSBIXG00005021260	ENSBIXG00005021149	ENSBIXG00005021137	PPP1R14C (ENSBIXG00005021119)	IYD (ENSBIXG00005021090) #14	ENSBIXG00005003560	PLEKHG1 (ENSBIXG00005021022) #15	MTHFD1L (ENSBIXG00005020926) #16	AKAP12 (ENSBIXG00005020718) #17	ZBTB2 (ENSBIXG00005020697) #18	RMND1 (ENSBIXG00005020664)	ARMT1 (ENSBIXG00005020618) #20	CCDC170 (ENSBIXG00005003477) #21	ENSBIXG00005020541	ESR1 (ENSBIXG00005020485) #22	SYNE1 (ENSBIXG00005007834) #23	MYCT1 (ENSBIXG00005019369) #26	VIP (ENSBIXG00005019364) #27	FBXO5 (ENSBIXG00005019333) #29	MTRF1L (ENSBIXG00005005667) #31	OPRM1 (ENSBIXG00005019182) #34	IPCEF1 (ENSBIXG00005019118) #35	CNKSR3 (ENSBIXG00005019050) #36	ENSBIXG00005019032	ENSBIXG00005019017	SCAF8 (ENSBIXG00005005736) #37	ENSBIXG00005000047	TIAM2 (ENSBIXG00005018908)	TFB1M (ENSBIXG00005005435)	CLDN20 (ENSBIXG00005018824)
Bos_a	ANCESTRAL SPECIES	54			ENSGT01100000263517.b.d.m.a.a.a.a.d.b.lb.a.a	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.mb.a.a	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT01100000263517.b.d.m.a.a.a.a.c.h.a	ENSGT01100000263517.b.d.m.a.a.a.a.d.b.lb.b.f.a	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023.b #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b.bc #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000154428.b #35	ENSGT00940000154428.a #36	ENSGT00950000182802.B.a.a.a.a.i.d	ENSGT00530000063946.b #37	ENSGT00940000161394.m.a	ENSGT00940000157012	ENSGT00950000183142.a.b.a.a	ENSGT00940000161252
Domestic yak	MODERN SPECIES	1				ENSBGRG00000007278	ENSBGRG00000007259	ENSBGRG00000007234	IYD (ENSBGRG00000007032) #14	ENSBGRG00000006995	PLEKHG1 (ENSBGRG00000006883) #15	MTHFD1L (ENSBGRG00000006438) #16	AKAP12 (ENSBGRG00000006364) #17	ZBTB2 (ENSBGRG00000006306) #18	RMND1 (ENSBGRG00000006257)	ARMT1 (ENSBGRG00000006221) #20	CCDC170 (ENSBGRG00000006106) #21	ESR1 (ENSBGRG00000006011) #22	ENSBGRG00000005788 #23	ENSBGRG00000005717 #23	ENSBGRG00000005659	ENSBGRG00000005643 #24	ENSBGRG00000004829 #23	MYCT1 (ENSBGRG00000004741) #26	VIP (ENSBGRG00000004685) #27	FBXO5 (ENSBGRG00000004593) #29	MTRF1L (ENSBGRG00000004480) #31	RGS17 (ENSBGRG00000004454) #32	ENSBGRG00000004442	OPRM1 (ENSBGRG00000004371) #34	IPCEF1 (ENSBGRG00000004304) #35	CNKSR3 (ENSBGRG00000003987) #36	ENSBGRG00000003933
Wild yak	MODERN SPECIES	414								ENSBMUG00000022703	PLEKHG1 (ENSBMUG00000022740) #15	MTHFD1L (ENSBMUG00000022849) #16	AKAP12 (ENSBMUG00000022883) #17	ZBTB2 (ENSBMUG00000022889) #18	RMND1 (ENSBMUG00000022921)	ARMT1 (ENSBMUG00000022940) #20	CCDC170 (ENSBMUG00000022950) #21	ENSBMUG00000022966 #22	SYNE1 (ENSBMUG00000023407) #23	MYCT1 (ENSBMUG00000023638) #26	VIP (ENSBMUG00000023648) #27	FBXO5 (ENSBMUG00000023656) #29	MTRF1L (ENSBMUG00000023676) #31	RGS17 (ENSBMUG00000023688) #32	ENSBMUG00000023702	OPRM1 (ENSBMUG00000023738) #34	IPCEF1 (ENSBMUG00000023775) #35	CNKSR3 (ENSBMUG00000023803) #36	ENSBMUG00000023809	SCAF8 (ENSBMUG00000023827) #37	ENSBMUG00000023830	TIAM2 (ENSBMUG00000023891)	TFB1M (ENSBMUG00000023932)
Atlantogenata	ANCESTRAL SPECIES	51	ENSGT00940000156638 #8	ENSGT00940000157684 #9	ENSGT00390000004803 #10	ENSGT00950000183032.B.b.b #11	ENSGT00940000161275 #12	ENSGT01100000263517.b.d.m.a.a.a.a.d	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023.b #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000154428.b #35	ENSGT00940000154428.a #36	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00940000161252	ENSGT00950000183142.a.b.a.a	ENSGT00940000160501	ENSGT00940000155634
Afrotheria	ANCESTRAL SPECIES	55	ENSGT00940000156638 #8	ENSGT00940000157684 #9	ENSGT00390000004803 #10	ENSGT00950000183032.B.b.b #11	ENSGT00940000161275 #12	ENSGT01100000263517.b.d.m.a.a.a.a.d	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023.a.a ##20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000154428.b #35	ENSGT00940000154428.a #36	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00950000183142.a.b.a.a	ENSGT00940000160501	ENSGT00940000155634
Tenrec	MODERN SPECIES	155																ESR1 (ENSETEG00000006131) #22
Afrotheria_a	ANCESTRAL SPECIES	51	ENSGT00940000156638 #8	ENSGT00940000157684 #9	ENSGT00390000004803 #10	ENSGT00950000183032.B.b.b #11	ENSGT00940000161275 #12	ENSGT01100000263517.b.d.m.a.a.a.a.d	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023.a.a ##20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000154428.b #35	ENSGT00940000154428.a #36	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00950000183142.a.b.a.a	ENSGT00940000160501	ENSGT00940000155634
Elephant	MODERN SPECIES	1	KATNA1 (ENSLAFG00000005080) #8	LATS1 (ENSLAFG00000005083) #9	NUP43 (ENSLAFG00000012413) #10	PCMT1 (ENSLAFG00000012417) #11	LRP11 (ENSLAFG00000022229) #12	ENSLAFG00000023055	PPP1R14C (ENSLAFG00000015503)	IYD (ENSLAFG00000004806) #14	PLEKHG1 (ENSLAFG00000002415) #15	MTHFD1L (ENSLAFG00000001635) #16	AKAP12 (ENSLAFG00000006275) #17	ZBTB2 (ENSLAFG00000001805) #18	RMND1 (ENSLAFG00000017983)	ARMT1 (ENSLAFG00000007338) ##20	CCDC170 (ENSLAFG00000012458) #21	ENSLAFG00000015250 #22	SYNE1 (ENSLAFG00000008554) #23	MYCT1 (ENSLAFG00000017921) #26	VIP (ENSLAFG00000006337) #27	FBXO5 (ENSLAFG00000001713) #29	MTRF1L (ENSLAFG00000004022) #31	RGS17 (ENSLAFG00000004025) #32	OPRM1 (ENSLAFG00000002597) #34	ENSLAFG00000031150	IPCEF1 (ENSLAFG00000002600) #35	CNKSR3 (ENSLAFG00000006519) #36	SCAF8 (ENSLAFG00000000022) #37	TIAM2 (ENSLAFG00000014023)	TFB1M (ENSLAFG00000014035)	NOX3 (ENSLAFG00000013520)	ARID1B (ENSLAFG00000012011)
Hyrax	MODERN SPECIES	58																ENSPCAG00000015346 #22	SYNE1 (ENSPCAG00000015425) #23
Xenarthra	ANCESTRAL SPECIES	435									ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023.b #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27
Armadillo	MODERN SPECIES	1722									ENSDNOG00000012345 #16	AKAP12 (ENSDNOG00000036531) #17	ZBTB2 (ENSDNOG00000047729) #18	ENSDNOG00000030670	RMND1 (ENSDNOG00000001802)	ARMT1 (ENSDNOG00000019662) #20	CCDC170 (ENSDNOG00000002029) #21	ESR1 (ENSDNOG00000038208) #22	ENSDNOG00000033660 #23	ENSDNOG00000032987 #24	ENSDNOG00000048000 #23	MYCT1 (ENSDNOG00000035399) #26	VIP (ENSDNOG00000038917) #27	SYCE3 (ENSDNOG00000025822)	KLHDC7B (ENSDNOG00000044024)	ENSDNOG00000031396	NCAPH2 (ENSDNOG00000015743)	LMF2 (ENSDNOG00000043653)	ENSDNOG00000047232	ENSDNOG00000011955	SBF1 (ENSDNOG00000038873)	PPP6R2 (ENSDNOG00000005094)
Marsupialia	ANCESTRAL SPECIES	2	ENSGT00390000008373 #7	ENSGT00940000156638 #8	ENSGT00940000157684 #9	ENSGT00390000004803 #10	ENSGT00950000183032.B.b.b #11	ENSGT00940000161275 #12	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023 #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000154428.b #35	ENSGT00940000154428.a #36	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00950000183142.a.b.a.a	ENSGT00940000161252	ENSGT00940000160501	ENSGT00940000155634
Marsupialia_b	ANCESTRAL SPECIES	1	ENSGT00390000008373 #7	ENSGT00940000156638 #8	ENSGT00940000157684 #9	ENSGT00390000004803 #10	ENSGT00950000183032.B.b.b #11	ENSGT00940000161275 #12	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023 #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642 #26	ENSGT00960000188774	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000154428.b #35	ENSGT00940000154428.a #36	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00950000183142.a.b.a.a	ENSGT00940000161252	ENSGT00940000160501	ENSGT00940000155634
Diprotodontia	ANCESTRAL SPECIES	15	ENSGT00390000008373 #7	ENSGT00940000156638 #8	ENSGT00940000157684 #9	ENSGT00390000004803 #10	ENSGT00950000183032.B.b.b #11	ENSGT00940000161275 #12	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023.c #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642 #26	ENSGT00960000188774	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000154428.b #35	ENSGT00940000154428.a #36	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00950000183142.a.b.a.a	ENSGT00940000161252	ENSGT00940000160501	ENSGT00940000155634
Diprotodontia_a	ANCESTRAL SPECIES	43	ENSGT00390000008373 #7	ENSGT00940000156638 #8	ENSGT00940000157684 #9	ENSGT00390000004803 #10	ENSGT00950000183032.B.b.b #11	ENSGT00940000161275 #12	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023.c #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642 #26	ENSGT00960000188774	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000154428.b #35	ENSGT00940000154428.a #36	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00950000183142.a.b.a.a	ENSGT00940000161252	ENSGT00940000160501	ENSGT00940000155634
Common wonbat	MODERN SPECIES	776	PPIL4 (ENSVURG00010002015)	GINM1 (ENSVURG00010001985) #7	KATNA1 (ENSVURG00010001974) #8	LATS1 (ENSVURG00010001959) #9	NUP43 (ENSVURG00010001929) #10	PCMT1 (ENSVURG00010001919) #11	ENSVURG00010001905 #12	PPP1R14C (ENSVURG00010001870)	IYD (ENSVURG00010001839) #14	PLEKHG1 (ENSVURG00010001804) #15	ENSVURG00010001784	MTHFD1L (ENSVURG00010001735) #16	RMND1 (ENSVURG00010001696)	ENSVURG00010001687 #20	ENSVURG00010001665 #20	ESR1 (ENSVURG00010001622) #22	ENSVURG00010001445 #23	ENSVURG00010001331 #23
koala	MODERN SPECIES	25	GINM1 (ENSPCIG00000025566) #7	KATNA1 (ENSPCIG00000025567) #8	LATS1 (ENSPCIG00000025569) #9	NUP43 (ENSPCIG00000025570) #10	PCMT1 (ENSPCIG00000025571) #11	LRP11 (ENSPCIG00000025572) #12	PPP1R14C (ENSPCIG00000025574)	IYD (ENSPCIG00000000102) #14	ENSPCIG00000036024 #15	MTHFD1L (ENSPCIG00000000340) #16	ENSPCIG00000000275 #17	ZBTB2 (ENSPCIG00000000317) #18	RMND1 (ENSPCIG00000015430)	ARMT1 (ENSPCIG00000015424) #20	CCDC170 (ENSPCIG00000015420) #21	ENSPCIG00000015401 #22	ENSPCIG00000026913 #23	ENSPCIG00000035321 #23	ENSPCIG00000037024 #24	ENSPCIG00000026821 #23	MYCT1 (ENSPCIG00000026720) #26	ENSPCIG00000026717	ENSPCIG00000008468	FBXO5 (ENSPCIG00000027501) #29	MTRF1L (ENSPCIG00000008136) #31	RGS17 (ENSPCIG00000024049) #32	OPRM1 (ENSPCIG00000001232) #34	IPCEF1 (ENSPCIG00000001189) #35	CNKSR3 (ENSPCIG00000001171) #36	SCAF8 (ENSPCIG00000001141) #37	TIAM2 (ENSPCIG00000001091)
Wallaby	MODERN SPECIES	678																ESR1 (ENSMEUG00000003564) #22
Tasmanian devil	MODERN SPECIES	3	KATNA1 (ENSSHAG00000017296) #8	LATS1 (ENSSHAG00000017388) #9	NUP43 (ENSSHAG00000022940) #10	PCMT1 (ENSSHAG00000023309) #11	LRP11 (ENSSHAG00000027360) #12	PPP1R14C (ENSSHAG00000017832)	IYD (ENSSHAG00000005031) #14	PLEKHG1 (ENSSHAG00000009584) #15	MTHFD1L (ENSSHAG00000010362) #16	ENSSHAG00000012930 #17	RMND1 (ENSSHAG00000020900)	ZBTB2 (ENSSHAG00000013043) #18	ARMT1 (ENSSHAG00000026323) #20	ENSSHAG00000013619	CCDC170 (ENSSHAG00000013818) #21	ESR1 (ENSSHAG00000015240) #22	SYNE1 (ENSSHAG00000016595) #23	MYCT1 (ENSSHAG00000028412) #26	ENSSHAG00000031731	FBXO5 (ENSSHAG00000017971) #29	MTRF1L (ENSSHAG00000017997) #31	RGS17 (ENSSHAG00000020953) #32	OPRM1 (ENSSHAG00000005181) #34	IPCEF1 (ENSSHAG00000025279) #35	CNKSR3 (ENSSHAG00000007010) #36	SCAF8 (ENSSHAG00000009915) #37	TIAM2 (ENSSHAG00000012539)	CLDN20 (ENSSHAG00000022719)	TFB1M (ENSSHAG00000013259)	NOX3 (ENSSHAG00000014151)	ENSSHAG00000030648
Opossum	MODERN SPECIES	1	LATS1 (ENSMODG00000016812) #9	ENSMODG00000048057 #10	ENSMODG00000016808 #10	PCMT1 (ENSMODG00000016804) #11	LRP11 (ENSMODG00000016792) #12	ENSMODG00000016787	IYD (ENSMODG00000016781) #14	ENSMODG00000041763 #15	ENSMODG00000016771 #15	MTHFD1L (ENSMODG00000016765) #16	ENSMODG00000046586 #17	ZBTB2 (ENSMODG00000040530) #18	RMND1 (ENSMODG00000016750)	ARMT1 (ENSMODG00000028240) #20	CCDC170 (ENSMODG00000016728) #21	ESR1 (ENSMODG00000016719) #22	SYNE1 (ENSMODG00000016253) #23	MYCT1 (ENSMODG00000008518) #26	VIP (ENSMODG00000008511) #27	FBXO5 (ENSMODG00000008501) #29	MTRF1L (ENSMODG00000008487) #31	RGS17 (ENSMODG00000008463) #32	ENSMODG00000042566	OPRM1 (ENSMODG00000008382) #34	ENSMODG00000008368	CNKSR3 (ENSMODG00000008343) #36	SCAF8 (ENSMODG00000008301) #37	ENSMODG00000040441	TIAM2 (ENSMODG00000008254)	ENSMODG00000011574	TFB1M (ENSMODG00000042364)
Platypus	MODERN SPECIES	11	GINM1 (ENSOANG00000001064) #7	KATNA1 (ENSOANG00000001065) #8	LATS1 (ENSOANG00000001067) #9	NUP43 (ENSOANG00000001068) #10	ENSOANG00000001066 #11	ENSOANG00000001069 #12	PPP1R14C (ENSOANG00000043661)	IYD (ENSOANG00000039425) #14	PLEKHG1 (ENSOANG00000003321) #15	MTHFD1L (ENSOANG00000021726) #16	ENSOANG00000039295 #17	ZBTB2 (ENSOANG00000003326) #18	RMND1 (ENSOANG00000003327)	ARMT1 (ENSOANG00000048494) #20	CCDC170 (ENSOANG00000003330) #21	ESR1 (ENSOANG00000040685) #22	SYNE1 (ENSOANG00000015557) #23	ENSOANG00000037205	ENSOANG00000011951	RSPH3 (ENSOANG00000021228)	EZR (ENSOANG00000001032)	ENSOANG00000001031	DYNLT1 (ENSOANG00000005209)	TMEM181 (ENSOANG00000010789)	TULP4 (ENSOANG00000041622)	ENSOANG00000014883	GTF2H5 (ENSOANG00000006893)	SERAC1 (ENSOANG00000008701)	SYNJ2 (ENSOANG00000029828)	SNX9 (ENSOANG00000042985)	ZDHHC14 (ENSOANG00000010962)
Sauria	ANCESTRAL SPECIES	1	ENSGT00940000156638 #8	ENSGT00940000157684 #9	ENSGT00390000004803 #10	ENSGT00950000183032.B.b.b #11	ENSGT00940000161275 #12	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00960000189587	ENSGT00530000064023 #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000163429.A	ENSGT00940000163429.D	ENSGT00940000154428 #35	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00940000161252	ENSGT00950000183142.a.b.a.a	ENSGT00940000160501
Archelosauria	ANCESTRAL SPECIES	1	ENSGT00940000156638 #8	ENSGT00940000157684 #9	ENSGT00390000004803 #10	ENSGT00950000183032.B.b.b #11	ENSGT00940000161275 #12	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00960000189587	ENSGT00530000064023 #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000163429.A	ENSGT00940000163429.D	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00940000161252	ENSGT00950000183142.a.b.a.a	ENSGT00940000160501	ENSGT00940000155634
Archosauria	ANCESTRAL SPECIES	3	ENSGT00940000156638 #8	ENSGT00940000157684 #9	ENSGT00390000004803 #10	ENSGT00950000183032.B.b.b #11	ENSGT00940000161275 #12	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00960000189587	ENSGT00530000064023 #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000163429.A	ENSGT00940000163429.D	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00940000161252	ENSGT00950000183142.a.b.a.a	ENSGT00940000160501	ENSGT00940000155634
Aves	ANCESTRAL SPECIES	12	ENSGT00940000156638 #8	ENSGT00940000157684 #9	ENSGT00390000004803 #10	ENSGT00950000183032.B.b.b #11	ENSGT00940000161275 #12	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00960000189587	ENSGT00530000064023 #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000163429.A	ENSGT00940000163429.D	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00940000161252	ENSGT00950000183142.a.b.a.a	ENSGT00940000160501	ENSGT00940000155634
Neognathae	ANCESTRAL SPECIES	2	ENSGT00940000156638 #8	ENSGT00940000157684 #9	ENSGT00390000004803 #10	ENSGT00950000183032.B.b.b #11	ENSGT00940000161275 #12	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00960000189587	ENSGT00530000064023 #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000163429.A	ENSGT00940000163429.D	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00950000183142.a.b.a.a	ENSGT00940000161252	ENSGT00940000160501	ENSGT00940000155634
Neognathae_b	ANCESTRAL SPECIES	1	ENSGT00940000156638 #8	ENSGT00940000157684 #9	ENSGT00390000004803 #10	ENSGT00950000183032.B.b.b #11	ENSGT00940000161275 #12	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00960000189587	ENSGT00530000064023 #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000163429.A	ENSGT00940000163429.D	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00940000161252	ENSGT00950000183142.a.b.a.a	ENSGT00940000160501	ENSGT00940000155634
Passeriformes	ANCESTRAL SPECIES	2	ENSGT00940000156638 #8	ENSGT00940000157684 #9	ENSGT00390000004803 #10	ENSGT00950000183032.B.b.b #11	ENSGT00940000161275 #12	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00960000189587	ENSGT00530000064023 #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000163429.A	ENSGT00940000163429.D	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00940000161252	ENSGT00950000183142.a.b.a.a	ENSGT00940000160501	ENSGT00940000155634
Great tit	MODERN SPECIES	22	GINM1 (ENSPMJG00000009292) #7	KATNA1 (ENSPMJG00000009228) #8	LATS1 (ENSPMJG00000009227) #9	NUP43 (ENSPMJG00000009226) #10	PCMT1 (ENSPMJG00000009224) #11	LRP11 (ENSPMJG00000009223) #12	PPP1R14C (ENSPMJG00000009207)	IYD (ENSPMJG00000009205) #14	PLEKHG1 (ENSPMJG00000009185) #15	MTHFD1L (ENSPMJG00000009104) #16	AKAP12 (ENSPMJG00000009097) #17	ZBTB2 (ENSPMJG00000009064) #18	RMND1 (ENSPMJG00000009063)	ARMT1 (ENSPMJG00000009061) #20	CCDC170 (ENSPMJG00000009058) #21	ESR1 (ENSPMJG00000009054) #22	ENSPMJG00000009003 #23	ENSPMJG00000008965 #23	MYCT1 (ENSPMJG00000008961) #26	VIP (ENSPMJG00000008960) #27	FBXO5 (ENSPMJG00000008955) #29	MTRF1L (ENSPMJG00000008953) #31	RGS17 (ENSPMJG00000008950) #32	OPRM1 (ENSPMJG00000008946) #34	ENSPMJG00000008944	ENSPMJG00000008941	SCAF8 (ENSPMJG00000008939) #37	TIAM2 (ENSPMJG00000008936)	CLDN20 (ENSPMJG00000008935)	TFB1M (ENSPMJG00000008934)	NOX3 (ENSPMJG00000008851)
Passeriformes_d	ANCESTRAL SPECIES	2	ENSGT00940000156638 #8	ENSGT00940000157684 #9	ENSGT00390000004803 #10	ENSGT00950000183032.B.b.b #11	ENSGT00940000161275 #12	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00960000189587	ENSGT00530000064023 #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000163429.A	ENSGT00940000163429.D	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00940000161252	ENSGT00950000183142.a.b.a.a	ENSGT00940000160501	ENSGT00940000155634
Passeriformes_g	ANCESTRAL SPECIES	1	ENSGT00940000156638 #8	ENSGT00940000157684 #9	ENSGT00390000004803 #10	ENSGT00950000183032.B.b.b #11	ENSGT00940000161275 #12	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00960000189587	ENSGT00530000064023 #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000163429.A	ENSGT00940000163429.D	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00950000183142.a.b.a.a	ENSGT00940000161252	ENSGT00940000160501	ENSGT00940000155634
Medium ground finch	MODERN SPECIES	19																ESR1 (ENSGFOG00000004320) #22	SYNE1 (ENSGFOG00000001502) #23	MYCT1 (ENSGFOG00000001280) #26	VIP (ENSGFOG00000001275) #27	FBXO5 (ENSGFOG00000001261) #29	MTRF1L (ENSGFOG00000001223) #31	RGS17 (ENSGFOG00000001204) #32	OPRM1 (ENSGFOG00000001199) #34	ENSGFOG00000001195	ENSGFOG00000001172	TIAM2 (ENSGFOG00000001112)	CLDN20 (ENSGFOG00000001099)	TFB1M (ENSGFOG00000001090)	NOX3 (ENSGFOG00000001065)	ARID1B (ENSGFOG00000001017)	TMEM242 (ENSGFOG00000001001)
Passeroidea	ANCESTRAL SPECIES		ENSGT00940000156638 #8	ENSGT00940000157684 #9	ENSGT00390000004803 #10	ENSGT00950000183032.B.b.b #11	ENSGT00940000161275 #12	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00960000189587	ENSGT00530000064023 #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000163429.A	ENSGT00940000163429.D	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00950000183142.a.b.a.a	ENSGT00940000161252	ENSGT00940000160501	ENSGT00940000155634
Zebra finch	MODERN SPECIES	23	GINM1 (ENSTGUG00000011370) #7	KATNA1 (ENSTGUG00000011351) #8	LATS1 (ENSTGUG00000011347) #9	NUP43 (ENSTGUG00000011345) #10	PCMT1 (ENSTGUG00000011332) #11	LRP11 (ENSTGUG00000011328) #12	PPP1R14C (ENSTGUG00000020746)	IYD (ENSTGUG00000011323) #14	PLEKHG1 (ENSTGUG00000011318) #15	MTHFD1L (ENSTGUG00000011286) #16	AKAP12 (ENSTGUG00000029620) #17	ZBTB2 (ENSTGUG00000020410) #18	RMND1 (ENSTGUG00000011268)	ARMT1 (ENSTGUG00000011263) #20	CCDC170 (ENSTGUG00000011261) #21	ESR1 (ENSTGUG00000011249) #22	ENSTGUG00000011195 #23	ENSTGUG00000024686 #24	ENSTGUG00000019412 #23	MYCT1 (ENSTGUG00000011193) #26	VIP (ENSTGUG00000020465) #27	MTRF1L (ENSTGUG00000011186) #31	RGS17 (ENSTGUG00000011185) #32	OPRM1 (ENSTGUG00000011179) #34	ENSTGUG00000028366	ENSTGUG00000023747	SCAF8 (ENSTGUG00000011151) #37	TIAM2 (ENSTGUG00000011142)	TFB1M (ENSTGUG00000011136)	CLDN20 (ENSTGUG00000011141)	NOX3 (ENSTGUG00000011124)
Common canary	MODERN SPECIES	31	KATNA1 (ENSSCAG00000011333) #8	LATS1 (ENSSCAG00000011352) #9	NUP43 (ENSSCAG00000011370) #10	PCMT1 (ENSSCAG00000011396) #11	LRP11 (ENSSCAG00000011398) #12	PPP1R14C (ENSSCAG00000011401)	IYD (ENSSCAG00000011402) #14	PLEKHG1 (ENSSCAG00000011409) #15	MTHFD1L (ENSSCAG00000011453) #16	AKAP12 (ENSSCAG00000011615) #17	ZBTB2 (ENSSCAG00000011626) #18	RMND1 (ENSSCAG00000011631)	ENSSCAG00000011637	ARMT1 (ENSSCAG00000011639) #20	CCDC170 (ENSSCAG00000011646) #21	ESR1 (ENSSCAG00000011670) #22	SYNE1 (ENSSCAG00000012054) #23	MYCT1 (ENSSCAG00000013731) #26	VIP (ENSSCAG00000013737) #27	FBXO5 (ENSSCAG00000013747) #29	MTRF1L (ENSSCAG00000013752) #31	RGS17 (ENSSCAG00000013756) #32	OPRM1 (ENSSCAG00000013760) #34	ENSSCAG00000013768	ENSSCAG00000013785	SCAF8 (ENSSCAG00000013808) #37	TIAM2 (ENSSCAG00000013824)	ENSSCAG00000013832	TFB1M (ENSSCAG00000013838)	CLDN20 (ENSSCAG00000013847)	NOX3 (ENSSCAG00000013853)
Flycatcher	MODERN SPECIES	21	GINM1 (ENSFALG00000012135) #7	KATNA1 (ENSFALG00000012149) #8	LATS1 (ENSFALG00000012161) #9	NUP43 (ENSFALG00000012166) #10	PCMT1 (ENSFALG00000026300) #11	LRP11 (ENSFALG00000023095) #12	ENSFALG00000023388	IYD (ENSFALG00000012182) #14	PLEKHG1 (ENSFALG00000012185) #15	MTHFD1L (ENSFALG00000012200) #16	AKAP12 (ENSFALG00000012244) #17	ZBTB2 (ENSFALG00000027296) #18	RMND1 (ENSFALG00000012263)	ARMT1 (ENSFALG00000023321) #20	CCDC170 (ENSFALG00000012277) #21	ESR1 (ENSFALG00000012305) #22	SYNE1 (ENSFALG00000012360) #23	MYCT1 (ENSFALG00000015346) #26	VIP (ENSFALG00000024261) #27	FBXO5 (ENSFALG00000012397) #29	MTRF1L (ENSFALG00000012403) #31	RGS17 (ENSFALG00000012407) #32	OPRM1 (ENSFALG00000012411) #34	IPCEF1 (ENSFALG00000026673)	ENSFALG00000012421	SCAF8 (ENSFALG00000012433) #37	TIAM2 (ENSFALG00000012470)	CLDN20 (ENSFALG00000014941)	TFB1M (ENSFALG00000023934)	NOX3 (ENSFALG00000012508)	ARID1B (ENSFALG00000012529)
Neognathae_c	ANCESTRAL SPECIES	5	ENSGT00390000008373 #7	ENSGT00940000156638 #8	ENSGT00940000157684 #9	ENSGT00390000004803 #10	ENSGT00950000183032.B.b.b #11	ENSGT00940000161275 #12	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023 #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000163429.A	ENSGT00940000163429.D	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00940000161252	ENSGT00950000183142.a.b.a.a	ENSGT00940000160501	ENSGT00940000155634
Kakapo	MODERN SPECIES	2	KATNA1 (ENSSHBG00005018585) #8	LATS1 (ENSSHBG00005018579) #9	NUP43 (ENSSHBG00005018573) #10	PCMT1 (ENSSHBG00005018568) #11	LRP11 (ENSSHBG00005018560) #12	PPP1R14C (ENSSHBG00005018557)	IYD (ENSSHBG00005018551) #14	PLEKHG1 (ENSSHBG00005018548) #15	ENSSHBG00005018545	MTHFD1L (ENSSHBG00005018498) #16	AKAP12 (ENSSHBG00005018480) #17	ZBTB2 (ENSSHBG00005018476) #18	RMND1 (ENSSHBG00005018472)	ARMT1 (ENSSHBG00005018468) #20	CCDC170 (ENSSHBG00005018463) #21	ESR1 (ENSSHBG00005018449) #22	SYNE1 (ENSSHBG00005013775) #23	MYCT1 (ENSSHBG00005012266) #26	VIP (ENSSHBG00005012244) #27	FBXO5 (ENSSHBG00005012219) #29	MTRF1L (ENSSHBG00005012193) #31	RGS17 (ENSSHBG00005012171) #32	OPRM1 (ENSSHBG00005012145) #34	ENSSHBG00005012130	ENSSHBG00005012066	SCAF8 (ENSSHBG00005011942) #37	TIAM2 (ENSSHBG00005011875)	CLDN20 (ENSSHBG00005011859)	TFB1M (ENSSHBG00005011837)	NOX3 (ENSSHBG00005011761)	ENSSHBG00005011723
Golden eagle	MODERN SPECIES	24	GINM1 (ENSACCG00020005522) #7	KATNA1 (ENSACCG00020005537) #8	LATS1 (ENSACCG00020005566) #9	NUP43 (ENSACCG00020005581) #10	PCMT1 (ENSACCG00020005602) #11	LRP11 (ENSACCG00020005620) #12	PPP1R14C (ENSACCG00020005640)	IYD (ENSACCG00020005672) #14	PLEKHG1 (ENSACCG00020005704) #15	MTHFD1L (ENSACCG00020005759) #16	AKAP12 (ENSACCG00020005819) #17	ZBTB2 (ENSACCG00020005841) #18	RMND1 (ENSACCG00020005297)	ARMT1 (ENSACCG00020005308) #20	CCDC170 (ENSACCG00020005320) #21	ESR1 (ENSACCG00020005342) #22	SYNE1 (ENSACCG00020006416) #23	MYCT1 (ENSACCG00020007328) #26	VIP (ENSACCG00020007352) #27	FBXO5 (ENSACCG00020007364) #29	MTRF1L (ENSACCG00020007439) #31	RGS17 (ENSACCG00020007480) #32	OPRM1 (ENSACCG00020007494) #34	ENSACCG00020007507	ENSACCG00020007527	SCAF8 (ENSACCG00020007542) #37	TIAM2 (ENSACCG00020007567)	TFB1M (ENSACCG00020007584)	CLDN20 (ENSACCG00020007593)	NOX3 (ENSACCG00020007609)	ARID1B (ENSACCG00020008028)
Galloanserae	ANCESTRAL SPECIES	2	ENSGT00390000008373 #7	ENSGT00940000156638 #8	ENSGT00940000157684 #9	ENSGT00390000004803 #10	ENSGT00950000183032.B.b.b #11	ENSGT00940000161275 #12	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023 #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000163429.A	ENSGT00940000163429.D	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00950000183142.a.b.a.a	ENSGT00940000161252	ENSGT00940000160501	ENSGT00940000155634
Anatidae	ANCESTRAL SPECIES		ENSGT00390000008373 #7	ENSGT00940000156638 #8	ENSGT00940000157684 #9	ENSGT00390000004803 #10	ENSGT00950000183032.B.b.b #11	ENSGT00940000161275 #12	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023 #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000163429.A	ENSGT00940000163429.D	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00940000161252	ENSGT00950000183142.a.b.a.a	ENSGT00940000160501.b	ENSGT00940000160501.a
Duck	MODERN SPECIES	21	KATNA1 (ENSAPLG00000008891) #8	LATS1 (ENSAPLG00000009385) #9	NUP43 (ENSAPLG00000028569) #10	PCMT1 (ENSAPLG00000009762) #11	LRP11 (ENSAPLG00000009937) #12	PPP1R14C (ENSAPLG00000009955)	IYD (ENSAPLG00000009957) #14	ENSAPLG00000029816 #15	ENSAPLG00000010066 #15	MTHFD1L (ENSAPLG00000010485) #16	AKAP12 (ENSAPLG00000020224) #17	ZBTB2 (ENSAPLG00000011819) #18	RMND1 (ENSAPLG00000011834)	ARMT1 (ENSAPLG00000011927) #20	CCDC170 (ENSAPLG00000011938) #21	ESR1 (ENSAPLG00000004585) #22	ENSAPLG00000017771 #23	ENSAPLG00000019803 #23	ENSAPLG00000027425	ENSAPLG00000020483	ENSAPLG00000017874 #24	ENSAPLG00000029426	ENSAPLG00000006495 #23	MYCT1 (ENSAPLG00000020316) #26	VIP (ENSAPLG00000006708) #27	FBXO5 (ENSAPLG00000006998) #29	MTRF1L (ENSAPLG00000007043) #31	RGS17 (ENSAPLG00000007077) #32	ENSAPLG00000024843	ENSAPLG00000015652	ENSAPLG00000006234
Pink-footed goose	MODERN SPECIES	2	PPIL4 (ENSABRG00000009200)	GINM1 (ENSABRG00000009189) #7	LATS1 (ENSABRG00000009169) #9	NUP43 (ENSABRG00000009140) #10	PCMT1 (ENSABRG00000009117) #11	LRP11 (ENSABRG00000009107) #12	PPP1R14C (ENSABRG00000009084)	IYD (ENSABRG00000009070) #14	PLEKHG1 (ENSABRG00000008984) #15	MTHFD1L (ENSABRG00000008938) #16	AKAP12 (ENSABRG00000008911) #17	ZBTB2 (ENSABRG00000008902) #18	RMND1 (ENSABRG00000008884)	ARMT1 (ENSABRG00000008870) #20	CCDC170 (ENSABRG00000008853) #21	ESR1 (ENSABRG00000008623) #22	SYNE1 (ENSABRG00000005369) #23	MYCT1 (ENSABRG00000005084) #26	VIP (ENSABRG00000005071) #27	FBXO5 (ENSABRG00000005041) #29	MTRF1L (ENSABRG00000005018) #31	RGS17 (ENSABRG00000005008) #32	OPRM1 (ENSABRG00000004981) #34	ENSABRG00000004958	ENSABRG00000004935	ENSABRG00000004920	SCAF8 (ENSABRG00000004887) #37	TIAM2 (ENSABRG00000004837)	CLDN20 (ENSABRG00000004825)	TFB1M (ENSABRG00000004813)	ENSABRG00000004798
Phasianidae	ANCESTRAL SPECIES	3	ENSGT00390000008373 #7	ENSGT00940000156638 #8	ENSGT00940000157684 #9	ENSGT00390000004803 #10	ENSGT00950000183032.B.b.b #11	ENSGT00940000161275 #12	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723.y #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023 #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000163429.A	ENSGT00940000163429.D	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00950000183142.a.b.a.a	ENSGT00940000161252	ENSGT00940000160501	ENSGT00940000155634
Phasianidae_b	ANCESTRAL SPECIES	2	ENSGT00390000008373 #7	ENSGT00940000156638 #8	ENSGT00940000157684 #9	ENSGT00390000004803 #10	ENSGT00950000183032.B.b.b #11	ENSGT00940000161275 #12	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723.y #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023 #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000163429.A	ENSGT00940000163429.D	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00950000183142.a.b.a.a	ENSGT00940000161252	ENSGT00940000160501	ENSGT00940000155634
Turkey	MODERN SPECIES	11	GINM1 (ENSMGAG00000012604) #7	KATNA1 (ENSMGAG00000012608) #8	LATS1 (ENSMGAG00000012618) #9	NUP43 (ENSMGAG00000012626) #10	PCMT1 (ENSMGAG00000012636) #11	PPP1R14C (ENSMGAG00000012643)	IYD (ENSMGAG00000012644) #14	ENSMGAG00000021541 #15	ENSMGAG00000012651 #15	MTHFD1L (ENSMGAG00000012662) #16	AKAP12 (ENSMGAG00000012673) #17	ZBTB2 (ENSMGAG00000021738) #18	RMND1 (ENSMGAG00000012680)	ARMT1 (ENSMGAG00000012685) #20	CCDC170 (ENSMGAG00000012688) #21	ESR1 (ENSMGAG00000012692) #22	SYNE1 (ENSMGAG00000012698) #23	MYCT1 (ENSMGAG00000015856) #26	VIP (ENSMGAG00000012740) #27	MTRF1L (ENSMGAG00000012738) #31	RGS17 (ENSMGAG00000012749) #32	OPRM1 (ENSMGAG00000012751) #34	ENSMGAG00000012753	ENSMGAG00000012756	SCAF8 (ENSMGAG00000012762) #37	TIAM2 (ENSMGAG00000012772)	TFB1M (ENSMGAG00000012779)	CLDN20 (ENSMGAG00000015858)	NOX3 (ENSMGAG00000012787)	ENSMGAG00000020145	ENSMGAG00000013036
Chicken	MODERN SPECIES	22	GINM1 (ENSGALG00010005484) #7	KATNA1 (ENSGALG00010005500) #8	LATS1 (ENSGALG00010005504) #9	NUP43 (ENSGALG00010005527) #10	PCMT1 (ENSGALG00010005540) #11	LRP11 (ENSGALG00010005547) #12	PPP1R14C (ENSGALG00010005553)	IYD (ENSGALG00010005556) #14	PLEKHG1 (ENSGALG00010005568) #15	MTHFD1L (ENSGALG00010005610) #16	AKAP12 (ENSGALG00010005704) #17	ZBTB2 (ENSGALG00010005716) #18	RMND1 (ENSGALG00010005752)	ARMT1 (ENSGALG00010005779) #20	CCDC170 (ENSGALG00010005141) #21	ESR1 (ENSGALG00010005186) #22	ENSGALG00010005203 #23	ENSGALG00010005213 #23	ENSGALG00010005216 #24	ENSGALG00010007190 ##23	ENSGALG00010005224 ##23	ENSGALG00010007201 #23	MYCT1 (ENSGALG00010005226) #26	VIP (ENSGALG00010005240) #27	FBXO5 (ENSGALG00010005244) #29	MTRF1L (ENSGALG00010005251) #31	RGS17 (ENSGALG00010006411) #32	ENSGALG00010006635	OPRM1 (ENSGALG00010005256) #34	IPCEF1 (ENSGALG00010005277)	ENSGALG00010005288
Japanese quail	MODERN SPECIES	21	GINM1 (ENSCJPG00005006199) #7	KATNA1 (ENSCJPG00005006212) #8	LATS1 (ENSCJPG00005006283) #9	ENSCJPG00005006284	NUP43 (ENSCJPG00005006287) #10	PCMT1 (ENSCJPG00005006305) #11	LRP11 (ENSCJPG00005006308) #12	PPP1R14C (ENSCJPG00005006377)	IYD (ENSCJPG00005006409) #14	PLEKHG1 (ENSCJPG00005006423) #15	MTHFD1L (ENSCJPG00005006446) #16	AKAP12 (ENSCJPG00005007509) #17	ZBTB2 (ENSCJPG00005007510) #18	RMND1 (ENSCJPG00005007512)	CCDC170 (ENSCJPG00005007525) #21	ESR1 (ENSCJPG00005007531) #22	ENSCJPG00005007549 #23	ENSCJPG00005007605 #23	MYCT1 (ENSCJPG00005007730) #26	VIP (ENSCJPG00005007731) #27	FBXO5 (ENSCJPG00005007733) #29	MTRF1L (ENSCJPG00005007734) #31	RGS17 (ENSCJPG00005007740) #32	OPRM1 (ENSCJPG00005007753) #34	ENSCJPG00005007757	ENSCJPG00005007764	SCAF8 (ENSCJPG00005007787) #37	TIAM2 (ENSCJPG00005007794)	TFB1M (ENSCJPG00005007800)	NOX3 (ENSCJPG00005007803)	ARID1B (ENSCJPG00005007834)
African ostrich	MODERN SPECIES	394								PLEKHG1 (ENSSCUG00000006059) #15	MTHFD1L (ENSSCUG00000005958) #16	AKAP12 (ENSSCUG00000005911) #17	ZBTB2 (ENSSCUG00000005909) #18	RMND1 (ENSSCUG00000005908)	ENSSCUG00000005907 #20	ENSSCUG00000005906 #20	CCDC170 (ENSSCUG00000005904) #21	ESR1 (ENSSCUG00000005902) #22	ENSSCUG00000005898 #23	ENSSCUG00000005891 #23	MYCT1 (ENSSCUG00000005889) #26	VIP (ENSSCUG00000005887) #27	FBXO5 (ENSSCUG00000005886) #29	MTRF1L (ENSSCUG00000005885) #31	RGS17 (ENSSCUG00000005882) #32
Australian saltwater crocodile	MODERN SPECIES	60	GINM1 (ENSCPRG00005018246) #7	KATNA1 (ENSCPRG00005018245) #8	LATS1 (ENSCPRG00005018242) #9	NUP43 (ENSCPRG00005018240) #10	PCMT1 (ENSCPRG00005018239) #11	LRP11 (ENSCPRG00005018237) #12	PPP1R14C (ENSCPRG00005018235)	IYD (ENSCPRG00005018228) #14	PLEKHG1 (ENSCPRG00005018218) #15	MTHFD1L (ENSCPRG00005018210) #16	AKAP12 (ENSCPRG00005018202) #17	ZBTB2 (ENSCPRG00005018192) #18	RMND1 (ENSCPRG00005018189)	ARMT1 (ENSCPRG00005018186) #20	CCDC170 (ENSCPRG00005018179) #21	ESR1 (ENSCPRG00005018167) #22	ENSCPRG00005018146 #23	ENSCPRG00005018130 #23	MYCT1 (ENSCPRG00005018122) #26	VIP (ENSCPRG00005018118) #27	FBXO5 (ENSCPRG00005018113) #29	MTRF1L (ENSCPRG00005018112) #31	RGS17 (ENSCPRG00005018111) #32	OPRM1 (ENSCPRG00005018110) #34	ENSCPRG00005018107	ENSCPRG00005018098	SCAF8 (ENSCPRG00005018086) #37	TIAM2 (ENSCPRG00005018071)	CLDN20 (ENSCPRG00005018068)	ENSCPRG00005018064	TFB1M (ENSCPRG00005018062)
Cryptodira	ANCESTRAL SPECIES	1	ENSGT00940000156638 #8	ENSGT00940000157684 #9	ENSGT00390000004803 #10	ENSGT00950000183032.B.b.b #11	ENSGT00940000161275 #12	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00960000189587	ENSGT00530000064023 #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000163429.A	ENSGT00940000163429.D	ENSGT00940000154428 #35	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00940000161252	ENSGT00950000183142.a.b.a.a	ENSGT00940000160501
Chinese turtle	MODERN SPECIES	461	KATNA1 (ENSPSIG00000017091) #8	LATS1 (ENSPSIG00000017097) #9	NUP43 (ENSPSIG00000017199) #10	PCMT1 (ENSPSIG00000017327) #11	ENSPSIG00000017362	PPP1R14C (ENSPSIG00000017492)	IYD (ENSPSIG00000017499) #14	ENSPSIG00000017546	PLEKHG1 (ENSPSIG00000017610) #15	MTHFD1L (ENSPSIG00000018016) #16	AKAP12 (ENSPSIG00000018242) #17	ZBTB2 (ENSPSIG00000018246) #18	RMND1 (ENSPSIG00000018248)	ARMT1 (ENSPSIG00000004092) #20	CCDC170 (ENSPSIG00000004116) #21	ESR1 (ENSPSIG00000004166) #22	ENSPSIG00000004530 #23	ENSPSIG00000004795	ENSPSIG00000004808 #23	ENSPSIG00000004853 #23	MYCT1 (ENSPSIG00000004949) #26	VIP (ENSPSIG00000004987) #27	ENSPSIG00000000120	FBXO5 (ENSPSIG00000005294) #29	MTRF1L (ENSPSIG00000005339) #31	RGS17 (ENSPSIG00000005802) #32	OPRM1 (ENSPSIG00000005901) #34	ENSPSIG00000006391	ENSPSIG00000007371 #35	SCAF8 (ENSPSIG00000008614) #37	TIAM2 (ENSPSIG00000009045)
Testudinoidea	DUPLICATION
Testudinoidea	ANCESTRAL SPECIES		ENSGT00940000156638 #8	ENSGT00940000157684 #9	ENSGT00390000004803 #10	ENSGT00950000183032.B.b.b #11	ENSGT00940000161275 #12	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00960000189587	ENSGT00530000064023 #20	ENSGT00390000012924.a #21	ENSGT00940000158133.g #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000163429.A	ENSGT00940000163429.D	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00940000161252	ENSGT00950000183142.a.b.a.a	ENSGT00940000160501	ENSGT00940000155634
Emydidae	ANCESTRAL SPECIES		ENSGT00390000008373 #7	ENSGT00940000156638 #8	ENSGT00940000157684 #9	ENSGT00390000004803 #10	ENSGT00950000183032.B.b.b #11	ENSGT00940000161275 #12	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023 #20	ENSGT00390000012924.a #21	ENSGT00940000158133.g #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000163429.A	ENSGT00940000163429.D	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00940000161252	ENSGT00950000183142.a.b.a.a	ENSGT00940000160501	ENSGT00940000155634
painted turtle	MODERN SPECIES	12	GINM1 (ENSCPBG00000016606) #7	KATNA1 (ENSCPBG00000016599) #8	LATS1 (ENSCPBG00000016594) #9	NUP43 (ENSCPBG00000016592) #10	PCMT1 (ENSCPBG00000016587) #11	LRP11 (ENSCPBG00000016581) #12	PPP1R14C (ENSCPBG00000016573)	IYD (ENSCPBG00000016570) #14	PLEKHG1 (ENSCPBG00000016555) #15	MTHFD1L (ENSCPBG00000016546) #16	AKAP12 (ENSCPBG00000016538) #17	ZBTB2 (ENSCPBG00000016532) #18	RMND1 (ENSCPBG00000016524)	ARMT1 (ENSCPBG00000016517) #20	CCDC170 (ENSCPBG00000016507) #21	ESR1 (ENSCPBG00000016495) #22	ENSCPBG00000016476 #23	ENSCPBG00000016384 #23	MYCT1 (ENSCPBG00000016354) #26	VIP (ENSCPBG00000016353) #27	FBXO5 (ENSCPBG00000016351) #29	MTRF1L (ENSCPBG00000016349) #31	RGS17 (ENSCPBG00000016347) #32	OPRM1 (ENSCPBG00000016340) #34	ENSCPBG00000016339	ENSCPBG00000016337	SCAF8 (ENSCPBG00000016330) #37	TIAM2 (ENSCPBG00000016323)	CLDN20 (ENSCPBG00000016322)	TFB1M (ENSCPBG00000016320)	NOX3 (ENSCPBG00000016318)
Three-toed box turtle	MODERN SPECIES	31	GINM1 (ENSTMTG00000004295) #7	KATNA1 (ENSTMTG00000004230) #8	LATS1 (ENSTMTG00000004215) #9	NUP43 (ENSTMTG00000004187) #10	PCMT1 (ENSTMTG00000004171) #11	LRP11 (ENSTMTG00000004151) #12	PPP1R14C (ENSTMTG00000004130)	IYD (ENSTMTG00000004119) #14	ENSTMTG00000004099 #15	MTHFD1L (ENSTMTG00000002772) #16	AKAP12 (ENSTMTG00000002678) #17	ZBTB2 (ENSTMTG00000002675) #18	RMND1 (ENSTMTG00000002671)	ARMT1 (ENSTMTG00000002665) #20	CCDC170 (ENSTMTG00000002659) #21	ESR1 (ENSTMTG00000002657) #22	ENSTMTG00000002405 #23	ENSTMTG00000002347	ENSTMTG00000002339 #24	ENSTMTG00000002319 #23	MYCT1 (ENSTMTG00000002308) #26	VIP (ENSTMTG00000002297) #27	FBXO5 (ENSTMTG00000002290) #29	MTRF1L (ENSTMTG00000002218) #31	RGS17 (ENSTMTG00000002186) #32	ENSTMTG00000002179 #34	ENSTMTG00000002172 #34	ENSTMTG00000002165	ENSTMTG00000002153	ENSTMTG00000002146	SCAF8 (ENSTMTG00000001928) #37
Testudinidae	ANCESTRAL SPECIES	4	ENSGT00940000156638 #8	ENSGT00940000157684 #9	ENSGT00390000004803 #10	ENSGT00950000183032.B.b.b #11	ENSGT00940000161275 #12	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00960000189587	ENSGT00530000064023 #20	ENSGT00390000012924.a #21	ENSGT00940000158133.g #22	ENSGT00940000158133.h #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000163429.A	ENSGT00940000154428 #35	ENSGT00940000163429.D	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00950000183142.a.b.a.a	ENSGT00940000161252
Goode s thornscrub tortoise	MODERN SPECIES	17	KATNA1 (ENSGEVG00005011989) #8	LATS1 (ENSGEVG00005012016) #9	ENSGEVG00005012043 #10	ENSGEVG00005012087 #10	PCMT1 (ENSGEVG00005012105) #11	LRP11 (ENSGEVG00005012143) #12	PPP1R14C (ENSGEVG00005012375)	IYD (ENSGEVG00005012422) #14	ENSGEVG00005012469 #15	MTHFD1L (ENSGEVG00005012612) #16	AKAP12 (ENSGEVG00005012759) #17	ZBTB2 (ENSGEVG00005012892) #18	RMND1 (ENSGEVG00005012911)	ARMT1 (ENSGEVG00005012940) #20	CCDC170 (ENSGEVG00005012970) #21	ESR1 (ENSGEVG00005013158) #22	SYNE1 (ENSGEVG00005015272) #23	MYCT1 (ENSGEVG00005020222) #26	VIP (ENSGEVG00005020226) #27	FBXO5 (ENSGEVG00005020230) #29	MTRF1L (ENSGEVG00005020238) #31	RGS17 (ENSGEVG00005020253) #32	ENSGEVG00005020259 #34	ENSGEVG00005020261 #34	ENSGEVG00005020266	ENSGEVG00005020281	SCAF8 (ENSGEVG00005020295) #37	TIAM2 (ENSGEVG00005020313)	TFB1M (ENSGEVG00005020318)	CLDN20 (ENSGEVG00005020321)	NOX3 (ENSGEVG00005020326)
Abingdon island giant tortoise	MODERN SPECIES	1158																ENSCABG00000013206 #22
Testudinoidea	ANCESTRAL SPECIES																	ENSGT00940000158133.h #22
Testudinidae	ANCESTRAL SPECIES	4	ENSGT00940000157684 #9	ENSGT00390000004803 #10	ENSGT00950000183032.B.b.b #11	ENSGT00940000161275 #12	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00960000189587	ENSGT00530000064023 #20	ENSGT00390000012924.a #21	ENSGT00940000158133.g #22	ENSGT00940000158133.h #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000163429.A	ENSGT00940000154428 #35	ENSGT00940000163429.D	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00950000183142.a.b.a.a	ENSGT00940000161252	ENSGT00940000160501
Abingdon island giant tortoise	MODERN SPECIES	284																ESR1 (ENSCABG00000007260) #22	ENSCABG00000007223 #23	ENSCABG00000007218 #23	ENSCABG00000007213	ENSCABG00000007210 #24	ENSCABG00000007204 #23	MYCT1 (ENSCABG00000007201) #26	VIP (ENSCABG00000007176) #27	FBXO5 (ENSCABG00000007171) #29	MTRF1L (ENSCABG00000007168) #31	RGS17 (ENSCABG00000007167) #32
Lepidosauria	ANCESTRAL SPECIES		ENSGT00940000156638 #8	ENSGT00940000157684 #9	ENSGT00390000004803 #10	ENSGT00950000183032.B.b.b #11	ENSGT00940000161275 #12	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00960000189587	ENSGT00530000064023 #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000163429.A	ENSGT00940000163429.D	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00950000183142.a.b.a.a	ENSGT00940000161252	ENSGT00940000160501	ENSGT00940000155634
Episquamata	ANCESTRAL SPECIES		ENSGT00940000156638 #8	ENSGT00940000157684 #9	ENSGT00390000004803 #10	ENSGT00950000183032.B.b.b #11	ENSGT00940000161275 #12	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00960000189587	ENSGT00530000064023 #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000163429.A	ENSGT00940000163429.D	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00950000183142.a.b.a.a	ENSGT00940000161252	ENSGT00940000160501	ENSGT00940000155634
Laterata	DUPLICATION
Laterata	ANCESTRAL SPECIES																	ENSGT00940000158133.i #22
Common wall lizard	MODERN SPECIES	170																ENSPMRG00000022021 #22
Laterata	ANCESTRAL SPECIES	4	ENSGT00390000008373 #7	ENSGT00940000156638 #8	ENSGT00940000157684 #9	ENSGT00390000004803 #10	ENSGT00950000183032.B.b.b #11	ENSGT00940000161275 #12	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023 #20	ENSGT00390000012924.a #21	ENSGT00940000158133.j #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000163429.A	ENSGT00940000163429.D	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00940000161252	ENSGT00950000183142.a.b.a.a	ENSGT00940000160501	ENSGT00940000155634
Common wall lizard	MODERN SPECIES	11	NUP43 (ENSPMRG00000010435) #10	PCMT1 (ENSPMRG00000010445) #11	LRP11 (ENSPMRG00000010457) #12	ENSPMRG00000010469	PPP1R14C (ENSPMRG00000010476)	IYD (ENSPMRG00000010480) #14	PLEKHG1 (ENSPMRG00000010487) #15	MTHFD1L (ENSPMRG00000010497) #16	AKAP12 (ENSPMRG00000010510) #17	ZBTB2 (ENSPMRG00000010513) #18	RMND1 (ENSPMRG00000010516)	ENSPMRG00000010520 #20	ENSPMRG00000010523 #20	ENSPMRG00000010528 #20	CCDC170 (ENSPMRG00000010531) #21	ENSPMRG00000010538 #22	ENSPMRG00000010543 #23	ENSPMRG00000010555 #23	ENSPMRG00000010559 #24	ENSPMRG00000010603 #23	MYCT1 (ENSPMRG00000010748) #26	VIP (ENSPMRG00000010751) #27	FBXO5 (ENSPMRG00000010755) #29	MTRF1L (ENSPMRG00000010758) #31	RGS17 (ENSPMRG00000010763) #32	OPRM1 (ENSPMRG00000010770) #34	ENSPMRG00000010775	ENSPMRG00000010784	SCAF8 (ENSPMRG00000010796) #37	TIAM2 (ENSPMRG00000010821)	TFB1M (ENSPMRG00000010835)
Argentine black and white tegu	MODERN SPECIES	2	GINM1 (ENSSMRG00000022638) #7	KATNA1 (ENSSMRG00000022637) #8	LATS1 (ENSSMRG00000022636) #9	NUP43 (ENSSMRG00000022635) #10	PCMT1 (ENSSMRG00000022634) #11	LRP11 (ENSSMRG00000022633) #12	PPP1R14C (ENSSMRG00000022632)	IYD (ENSSMRG00000022630) #14	PLEKHG1 (ENSSMRG00000022629) #15	MTHFD1L (ENSSMRG00000022628) #16	AKAP12 (ENSSMRG00000022627) #17	ZBTB2 (ENSSMRG00000022626) #18	RMND1 (ENSSMRG00000022625)	ARMT1 (ENSSMRG00000022624) #20	CCDC170 (ENSSMRG00000022623) #21	ESR1 (ENSSMRG00000022622) #22	ENSSMRG00000022621 #23	ENSSMRG00000022490 #23	MYCT1 (ENSSMRG00000022489) #26	VIP (ENSSMRG00000022488) #27	FBXO5 (ENSSMRG00000022487) #29	MTRF1L (ENSSMRG00000022486) #31	RGS17 (ENSSMRG00000022485) #32	ENSSMRG00000022481	OPRM1 (ENSSMRG00000022480) #34	ENSSMRG00000022479	ENSSMRG00000022478	SCAF8 (ENSSMRG00000022475) #37	TIAM2 (ENSSMRG00000022470)	CLDN20 (ENSSMRG00000022469)	TFB1M (ENSSMRG00000022468)
Toxicofera	ANCESTRAL SPECIES		ENSGT00940000156638 #8	ENSGT00940000157684 #9	ENSGT00390000004803 #10	ENSGT00950000183032.B.b.b #11	ENSGT00940000161275 #12	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00960000189587	ENSGT00530000064023 #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000163429.D	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00950000183142.a.b.a.a	ENSGT00940000161252	ENSGT00940000160501	ENSGT00940000155634	ENSGT00390000008642
Lizard	MODERN SPECIES	873	KATNA1 (ENSACAG00000006866) #8	LATS1 (ENSACAG00000006840) #9	NUP43 (ENSACAG00000006777) #10	PCMT1 (ENSACAG00000006734) #11	LRP11 (ENSACAG00000006719) #12	PPP1R14C (ENSACAG00000006718)	IYD (ENSACAG00000006702) #14	ENSACAG00000045327	PLEKHG1 (ENSACAG00000006603) #15	MTHFD1L (ENSACAG00000006340) #16	ENSACAG00000045552 #17	ZBTB2 (ENSACAG00000006317) #18	RMND1 (ENSACAG00000006275)	ARMT1 (ENSACAG00000006306) #20	CCDC170 (ENSACAG00000006265) #21	esr1 (ENSACAG00000006213) #22	ENSACAG00000037197	ENSACAG00000005645 #23
Elapidae	DUPLICATION
Elapidae	ANCESTRAL SPECIES																	ENSGT00940000158133.k #22
Elapidae_a	ANCESTRAL SPECIES																	ENSGT00940000158133.k #22
Blue-lipped sea krait	MODERN SPECIES	2310																ENSLLTG00000005862 #22
Elapidae	ANCESTRAL SPECIES		ENSGT00940000156638 #8	ENSGT00940000157684 #9	ENSGT00390000004803 #10	ENSGT00950000183032.B.b.b #11	ENSGT00940000161275 #12	ENSGT00950000182985.b.a	ENSGT00390000004348 #14	ENSGT00940000157723 #15	ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00960000189587	ENSGT00530000064023 #20	ENSGT00390000012924.a #21	ENSGT00940000158133.l #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000163429.D.e	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00950000183142.a.b.a.a	ENSGT00940000161252	ENSGT00940000160501	ENSGT00940000155634	ENSGT00390000008642
Elapidae_a	ANCESTRAL SPECIES	2										ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00960000189587	ENSGT00530000064023 #20	ENSGT00390000012924.a #21	ENSGT00940000158133.l #22	ENSGT00940000154481.a.b.uc #23	ENSGT00940000174968	ENSGT00940000165162.a #24	ENSGT00940000154481.a.b.vc #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000163429.D.e	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00950000183142.a.b.a.a	ENSGT00940000161252
Acanthophiinae	ANCESTRAL SPECIES	3										ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00960000189587	ENSGT00530000064023 #20	ENSGT00390000012924.a #21	ENSGT00940000158133.l #22	ENSGT00940000154481.a.b.uc #23	ENSGT00940000174968	ENSGT00940000165162.a #24	ENSGT00940000154481.a.b.vc #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000163429.D.e	ENSGT00530000063946.b #37	ENSGT00940000157012	ENSGT00950000183142.a.b.a.a	ENSGT00940000161252
Eastern brown snake	MODERN SPECIES	26											AKAP12 (ENSPTXG00000011975) #17	ZBTB2 (ENSPTXG00000011976) #18	RMND1 (ENSPTXG00000011977)	ARMT1 (ENSPTXG00000011979) #20	CCDC170 (ENSPTXG00000011981) #21	ESR1 (ENSPTXG00000011984) #22	SYNE1 (ENSPTXG00000012015) #23	MYCT1 (ENSPTXG00000013355) #26	VIP (ENSPTXG00000013357) #27	FBXO5 (ENSPTXG00000013358) #29	MTRF1L (ENSPTXG00000013360) #31	RGS17 (ENSPTXG00000013362) #32	ENSPTXG00000013364	OPRM1 (ENSPTXG00000013366) #34	ENSPTXG00000013368	ENSPTXG00000013369	SCAF8 (ENSPTXG00000013371) #37	TIAM2 (ENSPTXG00000013375)	TFB1M (ENSPTXG00000013379)	CLDN20 (ENSPTXG00000013381)	NOX3 (ENSPTXG00000013382)
Mainland tiger snake	MODERN SPECIES	130											ENSNSUG00000011555 #17	ZBTB2 (ENSNSUG00000011556) #18	ENSNSUG00000011558	ENSNSUG00000011560	ARMT1 (ENSNSUG00000011562) #20	ESR1 (ENSNSUG00000011583) #22	ENSNSUG00000011587 #23	ENSNSUG00000011591 #23	ENSNSUG00000011592	ENSNSUG00000011593 #24	ENSNSUG00000011594 #23	MYCT1 (ENSNSUG00000011612) #26	VIP (ENSNSUG00000011614) #27	FBXO5 (ENSNSUG00000011634) #29	MTRF1L (ENSNSUG00000011635) #31	RGS17 (ENSNSUG00000011636) #32	OPRM1 (ENSNSUG00000011638) #34	ENSNSUG00000011640	SCAF8 (ENSNSUG00000011721) #37	TIAM2 (ENSNSUG00000011875)	TFB1M (ENSNSUG00000011876)
Blue-lipped sea krait	DUPLICATION
Blue-lipped sea krait	MODERN SPECIES	8904																ENSLLTG00000003585 #22
Blue-lipped sea krait	MODERN SPECIES	6131																ENSLLTG00000011930 #22
Indian cobra	MODERN SPECIES		GINM1 (ENSNNAG00000000199) #7	KATNA1 (ENSNNAG00000000190) #8	LATS1 (ENSNNAG00000000182) #9	NUP43 (ENSNNAG00000000179) #10	PCMT1 (ENSNNAG00000000170) #11	LRP11 (ENSNNAG00000000167) #12	PPP1R14C (ENSNNAG00000000163)	IYD (ENSNNAG00000000160) #14	PLEKHG1 (ENSNNAG00000000156) #15	MTHFD1L (ENSNNAG00000000154) #16	ENSNNAG00000000153 #17	ZBTB2 (ENSNNAG00000000152) #18	RMND1 (ENSNNAG00000000151)	ARMT1 (ENSNNAG00000000149) #20	CCDC170 (ENSNNAG00000000148) #21	ESR1 (ENSNNAG00000000145) #22	ENSNNAG00000000142 #23	MYCT1 (ENSNNAG00000000136) #26	VIP (ENSNNAG00000000134) #27	FBXO5 (ENSNNAG00000000132) #29	MTRF1L (ENSNNAG00000000123) #31	RGS17 (ENSNNAG00000000122) #32	ENSNNAG00000000120	ENSNNAG00000000118	OPRM1 (ENSNNAG00000000115) #34	ENSNNAG00000000113	ENSNNAG00000000107	SCAF8 (ENSNNAG00000000099) #37	TIAM2 (ENSNNAG00000000085)	CLDN20 (ENSNNAG00000000073)	TFB1M (ENSNNAG00000000070)
tuatara	DUPLICATION
tuatara	MODERN SPECIES	207										MARCHF6 (ENSSPUG00000006375)	ROPN1L (ENSSPUG00000006286)	SNRNP48 (ENSSPUG00000006257)	ENSSPUG00000006234	DAP (ENSSPUG00000006225)	CTNND2 (ENSSPUG00000006205)	ESR1 (ENSSPUG00000006184) #22	ENSSPUG00000006170 #22	CCDC170 (ENSSPUG00000006108) #21	ARMT1 (ENSSPUG00000006097) #20	RMND1 (ENSSPUG00000006020)	ZBTB2 (ENSSPUG00000006004) #18	MTHFD1L (ENSSPUG00000005964) #16	ENSSPUG00000005940 #15	IYD (ENSSPUG00000005921) #14	PPP1R14C (ENSSPUG00000005841)	LRP11 (ENSSPUG00000005827) #12	PCMT1 (ENSSPUG00000005816) #11	ENSSPUG00000005769 #10	LATS1 (ENSSPUG00000005751) #9	ENSSPUG00000005722	KATNA1 (ENSSPUG00000005705) #8
tuatara	MODERN SPECIES	207	GINM1 (ENSSPUG00000005672) #7	KATNA1 (ENSSPUG00000005705) #8	ENSSPUG00000005722	LATS1 (ENSSPUG00000005751) #9	ENSSPUG00000005769 #10	PCMT1 (ENSSPUG00000005816) #11	LRP11 (ENSSPUG00000005827) #12	PPP1R14C (ENSSPUG00000005841)	IYD (ENSSPUG00000005921) #14	ENSSPUG00000005940 #15	MTHFD1L (ENSSPUG00000005964) #16	ZBTB2 (ENSSPUG00000006004) #18	RMND1 (ENSSPUG00000006020)	ARMT1 (ENSSPUG00000006097) #20	CCDC170 (ENSSPUG00000006108) #21	ENSSPUG00000006170 #22	ESR1 (ENSSPUG00000006184) #22	CTNND2 (ENSSPUG00000006205)	DAP (ENSSPUG00000006225)	ENSSPUG00000006234	SNRNP48 (ENSSPUG00000006257)	ROPN1L (ENSSPUG00000006286)	MARCHF6 (ENSSPUG00000006375)
Anura	ANCESTRAL SPECIES	63									ENSGT00730000111123	ENSGT01030000234595.A.b	ENSGT00940000162477	ENSGT00390000014904	ENSGT00950000182906.b.a	ENSGT00940000158401 #18	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642 #26	ENSGT00950000183154.a #27	ENSGT00530000063692.b #29	ENSGT00940000155683 #31	ENSGT00940000155393.d #32	ENSGT00940000158236 #34	ENSGT00940000155621	ENSGT00390000011342	ENSGT01090000260098.A	ENSGT00940000155089	ENSGT00390000013943	ENSGT00550000074878	ENSGT01030000234626.B	ENSGT00390000013931
Frog	MODERN SPECIES	5	ppp1r14c (ENSXETG00000022545)	strn (ENSXETG00000039028)	ENSXETG00000041580	ENSXETG00000007884	sult6b1.2 (ENSXETG00000025065)	tbc1d32 (ENSXETG00000007886)	sult6b1.5 (ENSXETG00000030952)	shprh (ENSXETG00000025060)	ENSXETG00000045386	grm1 (ENSXETG00000007892)	rab32 (ENSXETG00000007893)	adgb (ENSXETG00000047736)	zbtb2 (ENSXETG00000012362) #18	ccdc170 (ENSXETG00000014590) #21	stxbp5 (ENSXETG00000029924)	esr1 (ENSXETG00000012364) #22	syne1 (ENSXETG00000012367) #23	myct1 (ENSXETG00000031735) #26	vip (ENSXETG00000027906) #27	fbxo5 (ENSXETG00000018545) #29	mtrf1l (ENSXETG00000018541) #31	cebpzos (ENSXETG00000038064)	gpatch11 (ENSXETG00000018544)	crim1 (ENSXETG00000010373)	ENSXETG00000042091	ENSXETG00000019357	rasgrp3 (ENSXETG00000019354)	heatr5b (ENSXETG00000019350)	ltbp1 (ENSXETG00000019349)	ttc27 (ENSXETG00000017701)	ENSXETG00000043085
Leishan spiny toad	MODERN SPECIES	7	ENSLLEG00000027112	ENSLLEG00000027089	ENSLLEG00000026991	ENSLLEG00000026807	ENSLLEG00000026758	ENSLLEG00000026498	ENSLLEG00000026410	GRM1 (ENSLLEG00000026342)	RAB32 (ENSLLEG00000026313)	ADGB (ENSLLEG00000025721)	STXBP5 (ENSLLEG00000025451)	ZBTB2 (ENSLLEG00000025418) #18	ENSLLEG00000025397	CCDC170 (ENSLLEG00000025215) #21	ENSLLEG00000025191	ESR1 (ENSLLEG00000025142) #22	SYNE1 (ENSLLEG00000023244) #23	MYCT1 (ENSLLEG00000023136) #26	VIP (ENSLLEG00000022987) #27	FBXO5 (ENSLLEG00000022912) #29	MTRF1L (ENSLLEG00000022723) #31	ENSLLEG00000022666	RGS17 (ENSLLEG00000022614) #32	ENSLLEG00000022588	ENSLLEG00000022562	ENSLLEG00000022512	OPRM1 (ENSLLEG00000022332) #34	ENSLLEG00000022276	ENSLLEG00000022200	ENSLLEG00000022180	ENSLLEG00000020412
Coelacanth	MODERN SPECIES	2814																ENSLACG00000004454 #22	ENSLACG00000003737
Actinopterygii	ANCESTRAL SPECIES	69										ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023 #20	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642 #26	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000155913	ENSGT00390000007183	ENSGT00940000164803	ENSGT00940000155566	ENSGT00390000012588	ENSGT00530000065281	ENSGT00950000183107.a.a	ENSGT00950000182802.C	ENSGT00560000077266.a	ENSGT00940000159157	ENSGT00940000171557
Neopterygii	ANCESTRAL SPECIES	88											ENSGT00940000157477 #16	ENSGT00730000111244 #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023 #20	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642 #26	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000155913	ENSGT00390000007183	ENSGT00940000164803	ENSGT00940000155566	ENSGT00390000012588	ENSGT00530000065281	ENSGT00950000183107.a.a	ENSGT00950000182802.C	ENSGT00560000077266.a	ENSGT00940000159157	ENSGT00940000165353
Osteoglossocephalai	ANCESTRAL SPECIES	2	ENSGT00950000182906.b.a.i.a	ENSGT00940000162477.d	ENSGT01030000234595.A.b.a.a	ENSGT00730000111123	ENSGT00940000163723.B	ENSGT00950000183204.b.b.b	ENSGT00390000010101	ENSGT00940000153467.a.a	ENSGT01050000244948.c.b.a.b	ENSGT01050000244948.c.b.a.a.a	ENSGT00940000157477 #16	ENSGT00730000111244.a.b #17	ENSGT00940000158401 #18	ENSGT00390000013337	ENSGT00530000064023 #20	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642 #26	ENSGT00390000003560	ENSGT00390000004028	ENSGT00390000007183	ENSGT00940000155913.d
Clupeocephala	ANCESTRAL SPECIES	128															ENSGT00530000064023 #20	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642.e #26	ENSGT00390000003560	ENSGT00390000004028	ENSGT00390000007183	ENSGT00940000155913.d	ENSGT00390000009045	ENSGT01030000234809	ENSGT00530000063712.a.b	ENSGT00940000159266	ENSGT00550000074816.A.a	ENSGT01100000263595	ENSGT00390000015191	ENSGT00940000159969.b.a.a	ENSGT00940000158351
Otomorpha	ANCESTRAL SPECIES	551															ENSGT00530000064023 #20	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642.e #26	ENSGT00390000003560	ENSGT00390000004028
Otophysi	ANCESTRAL SPECIES	7															ENSGT00530000064023 #20	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642.e #26	ENSGT00390000003560	ENSGT00390000004028	ENSGT00390000016613.d	ENSGT00940000155605.a.a	ENSGT00940000156092.a.a	ENSGT00940000157336.p	ENSGT00390000011163	ENSGT00940000165020.a	ENSGT00390000017237	ENSGT00940000157459.a	ENSGT00940000163876	ENSGT00940000153446.b	ENSGT00940000157581.b
Characiphysae	ANCESTRAL SPECIES	47															ENSGT00530000064023 #20	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642.e #26	ENSGT00390000003560	ENSGT00390000004028	ENSGT00390000016613.d	ENSGT00940000155605.a.a	ENSGT00940000156092.a.a	ENSGT00940000157336.p	ENSGT00390000011163	ENSGT00940000165020.a	ENSGT00390000017237	ENSGT00940000157459.a	ENSGT00940000163876	ENSGT00940000153446.b	ENSGT00940000157581.b
Channel catfish	MODERN SPECIES	17	sipa1l1 (ENSIPUG00000019158)	ENSIPUG00000019228	rab15 (ENSIPUG00000019237)	fntb (ENSIPUG00000019260)	max (ENSIPUG00000019282)	SLC10A1 (ENSIPUG00000019309)	susd6 (ENSIPUG00000019336)	ENSIPUG00000019348	ENSIPUG00000019351	ENSIPUG00000019364	gpr176 (ENSIPUG00000019370)	mthfd1l (ENSIPUG00000019383) #16	akap12b (ENSIPUG00000019441) #17	zbtb2 (ENSIPUG00000019462) #18	armt1 (ENSIPUG00000019467) #20	esr1 (ENSIPUG00000019477) #22	ENSIPUG00000019547 #23	ENSIPUG00000019603	ENSIPUG00000019613	ENSIPUG00000019623 #23	ENSIPUG00000019651 #23	myct1 (ENSIPUG00000019673) #26	serac1 (ENSIPUG00000019676)	gtf2h5 (ENSIPUG00000019693)	ENSIPUG00000019702	nrbp1 (ENSIPUG00000019721)	capn3b (ENSIPUG00000019776)	ENSIPUG00000019838	churc1 (ENSIPUG00000019847)	ttbk2b (ENSIPUG00000019874)	ENSIPUG00000019904
Characiphysae_b	ANCESTRAL SPECIES	40															ENSGT00530000064023 #20	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642.e #26	ENSGT00390000003560	ENSGT00390000004028	ENSGT00390000016613.d	ENSGT00940000155605.a.a	ENSGT00940000156092.a.a	ENSGT00390000011163	ENSGT00940000165020.a	ENSGT00390000017237	ENSGT00940000157459.a	ENSGT00940000163876	ENSGT00940000153446.b	ENSGT00940000157581.b	ENSGT00390000011905
Characoidei	ANCESTRAL SPECIES	188															ENSGT00530000064023 #20	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642.e #26	ENSGT00390000003560	ENSGT00390000004028	ENSGT00390000016613.d	ENSGT00940000155605.a.a	ENSGT00940000156092.a.a	ENSGT00390000011163	ENSGT00940000165020.a	ENSGT00390000017237	ENSGT00940000157459.a	ENSGT00940000163876	ENSGT00940000153446.b	ENSGT00940000157581.b	ENSGT00390000011905
Red-bellied piranha	MODERN SPECIES	23	rab15 (ENSPNAG00000011215)	fntb (ENSPNAG00000011222)	max (ENSPNAG00000011232)	SLC10A1 (ENSPNAG00000011239)	srsf5b (ENSPNAG00000011262)	susd6 (ENSPNAG00000011275)	ENSPNAG00000011289	ENSPNAG00000011294	ENSPNAG00000007166	ENSPNAG00000011313	gpr176 (ENSPNAG00000011327)	mthfd1l (ENSPNAG00000011455) #16	akap12b (ENSPNAG00000001756) #17	zbtb2b (ENSPNAG00000001760) #18	armt1 (ENSPNAG00000011531) #20	esr1 (ENSPNAG00000012604) #22	SYNE1 (ENSPNAG00000002509) #23	myct1a (ENSPNAG00000013026) #26	gtf2h5 (ENSPNAG00000013046)	serac1 (ENSPNAG00000013115)	ENSPNAG00000013121	nrbp1 (ENSPNAG00000013163)	CAPN3 (ENSPNAG00000013182)	churc1 (ENSPNAG00000013201)	ttbk2b (ENSPNAG00000002635)	slc35f6 (ENSPNAG00000013243)	mideasa (ENSPNAG00000013274)	zgc:153896 (ENSPNAG00000013286)	laptm4a (ENSPNAG00000013299)	matn3a (ENSPNAG00000002728)	ttc32 (ENSPNAG00000007172)
Mexicana tetra	MODERN SPECIES	18	rgs6 (ENSAMXG00000043548)	sipa1l1 (ENSAMXG00000017380)	rab15 (ENSAMXG00000043951)	fntb (ENSAMXG00000017420)	max (ENSAMXG00000017435)	SLC10A1 (ENSAMXG00000011927)	srsf5b (ENSAMXG00000011932)	susd6 (ENSAMXG00000030646)	ENSAMXG00000034531	ENSAMXG00000037553	gpr176 (ENSAMXG00000011944)	mthfd1l (ENSAMXG00000030844) #16	akap12b (ENSAMXG00000006246) #17	zbtb2b (ENSAMXG00000032501) #18	armt1 (ENSAMXG00000041252) #20	esr1 (ENSAMXG00000006267) #22	SYNE1 (ENSAMXG00000006306) #23	myct1a (ENSAMXG00000034945) #26	serac1 (ENSAMXG00000006378)	gtf2h5 (ENSAMXG00000032201)	ENSAMXG00000006381	nrbp1 (ENSAMXG00000006393)	CAPN3 (ENSAMXG00000006422)	churc1 (ENSAMXG00000044036)	ttbk2b (ENSAMXG00000006440)	slc35f6 (ENSAMXG00000011284)	mideasa (ENSAMXG00000011269)	zgc:153896 (ENSAMXG00000006446)	laptm4a (ENSAMXG00000039198)	matn3a (ENSAMXG00000006450)	ttc32 (ENSAMXG00000006453)
Electric eel	MODERN SPECIES	3	dpf3 (ENSEEEG00000013322)	rgs6 (ENSEEEG00000013328)	sipa1l1 (ENSEEEG00000013413)	rab15 (ENSEEEG00000013452)	fntb (ENSEEEG00000013459)	max (ENSEEEG00000013517)	SLC10A1 (ENSEEEG00000013523)	srsf5b (ENSEEEG00000013524)	susd6 (ENSEEEG00000013526)	acot22 (ENSEEEG00000013527)	gpr176 (ENSEEEG00000013529)	mthfd1l (ENSEEEG00000013543) #16	akap12b (ENSEEEG00000013613) #17	zbtb2b (ENSEEEG00000013616) #18	armt1 (ENSEEEG00000013619) #20	esr1 (ENSEEEG00000013622) #22	ENSEEEG00000013638 #23	ENSEEEG00000013667	ENSEEEG00000013670	ENSEEEG00000013676 #23	ENSEEEG00000013678	myct1a (ENSEEEG00000013679) #26	serac1 (ENSEEEG00000013683)	gtf2h5 (ENSEEEG00000013773)	ENSEEEG00000013777	nrbp1 (ENSEEEG00000013804)	CAPN3 (ENSEEEG00000014368)	churc1 (ENSEEEG00000014370)	ttbk2b (ENSEEEG00000014373)	slc35f6 (ENSEEEG00000014376)	mideasa (ENSEEEG00000014378)
Cyprinoidei	ANCESTRAL SPECIES	11															ENSGT00530000064023 #20	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642.e #26	ENSGT00390000003560	ENSGT00390000004028	ENSGT00390000016613.d.a	ENSGT00940000155605.a.a	ENSGT00940000156092.a.a	ENSGT00940000157336.p	ENSGT00390000011163	ENSGT00940000165020.a	ENSGT00390000017237	ENSGT00940000157459.a	ENSGT00940000163876	ENSGT00940000158640	ENSGT00940000162640
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	133	ENSGT00940000154573.bb.a	ENSGT00940000156211.a.a.c	ENSGT00440000033640.f	ENSGT00940000162303.a.a.b.b	ENSGT00940000163866.a.b.d	ENSGT00940000162937.a.a.c	ENSGT00390000010872.k	ENSGT00940000166222.h.a.b	ENSGT00510000047616.a.b.a	ENSGT01050000244948.c.b.a.a.a.f.b	ENSGT01050000244948.c.b.a.a.a.e.b	ENSGT00940000157477.a #16	ENSGT00730000111244.a.b.a #17	ENSGT00940000158401.h.d.b #18	ENSGT00530000064023.i #20	ENSGT00940000158133.a #22	ENSGT00940000154481.a.b.c #23	ENSGT00390000011642.e.a.a #26	ENSGT00390000003560.c	ENSGT00390000004028	ENSGT00390000016613.d.a.a	ENSGT00940000155605.a.a.c	ENSGT00940000156092.a.a	ENSGT00940000157336.p	ENSGT00390000011163.g	ENSGT00940000165020.a.b	ENSGT00390000017237.b	ENSGT00940000157459.a.d	ENSGT00390000016613.d.a.b	ENSGT00940000155605.a.a.d	ENSGT00390000011163.h
Goldfish	MODERN SPECIES	12	zbtb1 (ENSCARG00000030133)	ENSCARG00000030145	MYLK4 (ENSCARG00000030159)	gmds (ENSCARG00000030186)	foxc1b (ENSCARG00000030296)	ENSCARG00000030302	exoc2 (ENSCARG00000030324)	ENSCARG00000030406	si:dkey-25e12.3 (ENSCARG00000030455)	stx11b.1 (ENSCARG00000030484)	stx11b.2 (ENSCARG00000030489)	mthfd1l (ENSCARG00000030566) #16	akap12b (ENSCARG00000031106) #17	zbtb2b (ENSCARG00000031134) #18	armt1 (ENSCARG00000031148) #20	esr1 (ENSCARG00000031177) #22	SYNE1 (ENSCARG00000031510) #23	myct1a (ENSCARG00000035172) #26	serac1 (ENSCARG00000035245)	gtf2h5 (ENSCARG00000038794)	ENSCARG00000038814	nrbp1 (ENSCARG00000038875)	CAPN3 (ENSCARG00000039169)	churc1 (ENSCARG00000039243)	ttbk2b (ENSCARG00000039277)	slc35f6 (ENSCARG00000039297)	mideasa (ENSCARG00000039332)	exoc1 (ENSCARG00000039383)	chst14 (ENSCARG00000039893)	ENSCARG00000039897	cracd (ENSCARG00000039917)
Cyprininae_a	ANCESTRAL SPECIES	34	ENSGT01100000263516.a.b.b.b.b.a.a.b.a.a.a.a.b.a.a.b	ENSGT00940000154573.bb.a	ENSGT00940000156211.a.a.c	ENSGT00440000033640.f	ENSGT00940000162303.a.a.b.b	ENSGT00940000163866.a.b.d	ENSGT00940000162937.a.a.c	ENSGT00390000010872.k	ENSGT00940000166222.h.a.b	ENSGT01050000244948.c.b.a.a.a.f.b	ENSGT01050000244948.c.b.a.a.a.e.b	ENSGT00940000157477.a #16	ENSGT00730000111244.a.b.a #17	ENSGT00940000158401.h.d.b #18	ENSGT00530000064023.i #20	ENSGT00940000158133.a #22	ENSGT00940000154481.a.b.c #23	ENSGT00390000011642.e.a.a #26	ENSGT00390000003560.c	ENSGT00390000004028	ENSGT00390000016613.d.a.a	ENSGT00940000155605.a.a.c	ENSGT00940000156092.a.a.e	ENSGT00940000157336.p	ENSGT00390000011163.g	ENSGT00940000165020.a.b	ENSGT00390000017237.b	ENSGT00940000157459.a.d	ENSGT00940000163876.a	ENSGT00940000158640.k	ENSGT00940000162640.f
Common carp reference	MODERN SPECIES	34	serpinb1 (ENSCCRG00000069590)	MYLK4 (ENSCCRG00000007674)	gmds (ENSCCRG00000067545)	foxc1b (ENSCCRG00000053236)	ENSCCRG00000010164	foxq1b (ENSCCRG00000010160)	exoc2 (ENSCCRG00000007610)	ENSCCRG00000000279	si:dkey-25e12.3 (ENSCCRG00000055733)	stx11b.1 (ENSCCRG00000057591)	stx11b.2 (ENSCCRG00000079424)	mthfd1l (ENSCCRG00000000201) #16	akap12b (ENSCCRG00000064281) #17	armt1 (ENSCCRG00000059660) #20	zbtb2b (ENSCCRG00000005790) #18	esr1 (ENSCCRG00000036810) #22	ENSCCRG00000079711 #23	myct1a (ENSCCRG00000041991) #26	serac1 (ENSCCRG00000041994)	ENSCCRG00000045050	nrbp1 (ENSCCRG00000048040)	ENSCCRG00000047054	churc1 (ENSCCRG00000053928)	ttbk2b (ENSCCRG00000063210)	slc35f6 (ENSCCRG00000080634)	mideasa (ENSCCRG00000061847)	exoc1 (ENSCCRG00000047478)	chst14 (ENSCCRG00000048088)	cep135 (ENSCCRG00000048091)	cracd (ENSCCRG00000057849)	AASDH (ENSCCRG00000072263)
Golden-line barbel	MODERN SPECIES	543		SERPINB1 (ENSSGRG00000046748)	MYLK4 (ENSSGRG00000046747)	gmds (ENSSGRG00000046704)	foxc1b (ENSSGRG00000046700)	ENSSGRG00000046699	foxq1b (ENSSGRG00000046697)	exoc2 (ENSSGRG00000046605)	ENSSGRG00000046589	ENSSGRG00000046576	si:dkey-25e12.3 (ENSSGRG00000046572)	mthfd1l (ENSSGRG00000046568) #16	akap12b (ENSSGRG00000046560) #17	zbtb2b (ENSSGRG00000046557) #18	armt1 (ENSSGRG00000046554) #20	esr1 (ENSSGRG00000046485) #22	SYNE1 (ENSSGRG00000046430) #23	myct1a (ENSSGRG00000046406) #26	serac1 (ENSSGRG00000046219)	gtf2h5 (ENSSGRG00000046213)	ENSSGRG00000046211	nrbp1 (ENSSGRG00000045462)	ENSSGRG00000045425	ENSSGRG00000045424	churc1 (ENSSGRG00000045416)	ttbk2b (ENSSGRG00000045414)	slc35f6 (ENSSGRG00000045413)	mideasa (ENSSGRG00000045412)	ENSSGRG00000045410	exoc1 (ENSSGRG00000043848)	chst14 (ENSSGRG00000043810)
Cyprininae	ANCESTRAL SPECIES	567	ENSGT00940000154573.bb.b	ENSGT00940000156211.a.a.d	ENSGT00440000033640.e	ENSGT00940000162303.a.a.b.a	ENSGT00940000163866.a.b.c	ENSGT00940000162937.a.a.d	ENSGT00390000010872.l	ENSGT00940000166222.h.a.a	ENSGT00510000047616.a.b.b	ENSGT01050000244948.c.b.a.a.a.f.a	ENSGT01050000244948.c.b.a.a.a.e.a	ENSGT00940000157477.b #16	ENSGT00730000111244.a.b.b #17	ENSGT00940000158401.h.d.a #18	ENSGT00530000064023.j #20	ENSGT00940000158133.b #22	ENSGT00940000154481.a.b.d #23	ENSGT00390000011642.e.a.b #26	ENSGT00390000003560.d
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	39	ENSCARG00000041509	RRM2 (ENSCARG00000041629)	klf11a (ENSCARG00000044840)	SCML4 (ENSCARG00000044874)	sec63 (ENSCARG00000044969)	OSTM1 (ENSCARG00000047061)	nr2e1 (ENSCARG00000047064)	snx3 (ENSCARG00000047097)	chac1 (ENSCARG00000047105)	ENSCARG00000047114	ENSCARG00000047128	ENSCARG00000047131	ENSCARG00000047144	ENSCARG00000047173	zbtb2b (ENSCARG00000047181) #18	esr1 (ENSCARG00000047209) #22	ENSCARG00000047482	ENSCARG00000047503	serpinb1l2 (ENSCARG00000047516)	zbtb2b (ENSCARG00000047600) #18	akap12b (ENSCARG00000047651) #17	mthfd1l (ENSCARG00000047842) #16	stx11b.2 (ENSCARG00000052621)	stx11b.1 (ENSCARG00000052624)	si:dkey-25e12.3 (ENSCARG00000052627)	ENSCARG00000052638	exoc2 (ENSCARG00000052720)	foxq1b (ENSCARG00000052959)	ENSCARG00000052964	foxc1b (ENSCARG00000052969)	gmds (ENSCARG00000052989)
Goldfish	MODERN SPECIES	39	serpinb1l2 (ENSCARG00000047516)	zbtb2b (ENSCARG00000047600) #18	akap12b (ENSCARG00000047651) #17	mthfd1l (ENSCARG00000047842) #16	stx11b.2 (ENSCARG00000052621)	stx11b.1 (ENSCARG00000052624)	si:dkey-25e12.3 (ENSCARG00000052627)	ENSCARG00000052638	exoc2 (ENSCARG00000052720)	foxq1b (ENSCARG00000052959)	ENSCARG00000052964	foxc1b (ENSCARG00000052969)	gmds (ENSCARG00000052989)	MYLK4 (ENSCARG00000053130)	serpinb1 (ENSCARG00000019574)	esr1 (ENSCARG00000019585) #22	myct1a (ENSCARG00000021812) #26	serac1 (ENSCARG00000021857)	gtf2h5 (ENSCARG00000022365)	ENSCARG00000022377	nrbp1 (ENSCARG00000022391)	churc1 (ENSCARG00000022514)	ttbk2b (ENSCARG00000022526)	slc35f6 (ENSCARG00000022538)	mideasa (ENSCARG00000022556)	zgc:153896 (ENSCARG00000022565)	exoc1 (ENSCARG00000022597)	chst14 (ENSCARG00000022728)	cep135 (ENSCARG00000022736)	cracd (ENSCARG00000022762)	ENSCARG00000022775
Cyprininae_a	ANCESTRAL SPECIES	284								ENSGT00510000047616.a.b.b	ENSGT01050000244948.c.b.a.a.a.f.a	ENSGT01050000244948.c.b.a.a.a.e.a	ENSGT00940000157477.b #16	ENSGT00730000111244.a.b.b #17	ENSGT00940000158401.h.d.a #18	ENSGT00530000064023.j.a #20	ENSGT00530000064023.j.b #20	ENSGT00940000158133.b #22	ENSGT00940000154481.a.b.d #23	ENSGT00390000011642.e.a.b #26	ENSGT00390000003560.d	ENSGT00390000016613.d.a.b	ENSGT00940000155605.a.a.d	ENSGT00940000156092.a.a.f	ENSGT00390000011163.h	ENSGT00940000165020.a.a	ENSGT00390000017237.a	ENSGT00940000157459.a.c	ENSGT00940000163876.b	ENSGT00940000158640.l	ENSGT00940000162640.e	ENSGT00940000161471.e	ENSGT00980000199199.a
Common carp reference	MODERN SPECIES	28	serpinb1l2 (ENSCCRG00000054466)	ENSCCRG00000072040	foxc1b (ENSCCRG00000081149)	gmds (ENSCCRG00000007580)	ENSCCRG00000069409	exoc2 (ENSCCRG00000006061)	ENSCCRG00000005982	ENSCCRG00000050165	si:dkey-25e12.3 (ENSCCRG00000052880)	stx11b.1 (ENSCCRG00000081745)	stx11b.2 (ENSCCRG00000067273)	mthfd1l (ENSCCRG00000015363) #16	akap12b (ENSCCRG00000078447) #17	zbtb2b (ENSCCRG00000071312) #18	armt1 (ENSCCRG00000005786) #20	esr1 (ENSCCRG00000004749) #22	myct1a (ENSCCRG00000042367) #26	ENSCCRG00000003368 #23	serac1 (ENSCCRG00000042387)	ENSCCRG00000042000	nrbp1 (ENSCCRG00000045089)	ENSCCRG00000062630	churc1 (ENSCCRG00000012062)	ttbk2b (ENSCCRG00000047463)	slc35f6 (ENSCCRG00000043989)	mideasa (ENSCCRG00000072520)	zgc:153896 (ENSCCRG00000048092)	exoc1 (ENSCCRG00000048103)	cep135 (ENSCCRG00000050391)	si:dkeyp-117h8.4 (ENSCCRG00000024815)	ppat (ENSCCRG00000015812)
Golden-line barbel	MODERN SPECIES	555				gmds (ENSSGRG00000042703)	foxc1b (ENSSGRG00000042702)	ENSSGRG00000042701	foxq1b (ENSSGRG00000042700)	exoc2 (ENSSGRG00000041926)	si:dkey-25e12.3 (ENSSGRG00000041898)	stx11b.1 (ENSSGRG00000041897)	stx11b.2 (ENSSGRG00000041896)	mthfd1l (ENSSGRG00000041895) #16	akap12b (ENSSGRG00000041893) #17	zbtb2b (ENSSGRG00000041890) #18	armt1 (ENSSGRG00000041888) #20	esr1 (ENSSGRG00000041830) #22	SYNE1 (ENSSGRG00000041482) #23	serac1 (ENSSGRG00000041132)	ENSSGRG00000041124	nrbp1 (ENSSGRG00000041060)	ENSSGRG00000041055	churc1 (ENSSGRG00000041054)	ttbk2b (ENSSGRG00000041052)	slc35f6 (ENSSGRG00000041050)	mideasa (ENSSGRG00000041049)	zgc:153896 (ENSSGRG00000041048)	exoc1 (ENSSGRG00000039757)	chst14 (ENSSGRG00000039720)	cracd (ENSSGRG00000039714)	si:dkeyp-117h8.4 (ENSSGRG00000039712)	ppat (ENSSGRG00000039562)
Zebrafish	MODERN SPECIES	12	serpinb1 (ENSDARG00000055416)	MYLK4 (ENSDARG00000055412)	gmds (ENSDARG00000026629)	foxc1b (ENSDARG00000055398)	ENSDARG00000070389	foxq1b (ENSDARG00000055395)	exoc2 (ENSDARG00000055610)	ENSDARG00000055374	si:dkey-25e12.3 (ENSDARG00000055365)	stx11b.1 (ENSDARG00000029290)	stx11b.2 (ENSDARG00000042231)	mthfd1l (ENSDARG00000042221) #16	akap12b (ENSDARG00000055678) #17	zbtb2b (ENSDARG00000028086) #18	armt1 (ENSDARG00000055676) #20	esr1 (ENSDARG00000004111) #22	SYNE1 (ENSDARG00000009499) #23	myct1a (ENSDARG00000056125) #26	serac1 (ENSDARG00000056121)	gtf2h5 (ENSDARG00000056099)	ENSDARG00000056092	nrbp1 (ENSDARG00000056089)	CAPN3 (ENSDARG00000043035)	ENSDARG00000091947	churc1 (ENSDARG00000010831)	ttbk2b (ENSDARG00000043026)	slc35f6 (ENSDARG00000016745)	mideasa (ENSDARG00000011445)	zgc:153896 (ENSDARG00000003977)	exoc1 (ENSDARG00000043019)	chst14 (ENSDARG00000043011)
Clupeiformes	ANCESTRAL SPECIES	478											ENSGT01050000244948.c.b.a.a.a	ENSGT00940000157477 #16	ENSGT00730000111244.a.b #17	ENSGT00940000158401.e #18	ENSGT00530000064023 #20	ENSGT00940000158133 #22	ENSGT00390000011642.e #26	ENSGT00390000003560	ENSGT00390000004028
Denticle herring	MODERN SPECIES	5	ENSDCDG00000033750	ENSDCDG00000033749	ctsbb (ENSDCDG00000033743)	fdft1 (ENSDCDG00000033739)	gata4 (ENSDCDG00000033736)	ENSDCDG00000033734	ENSDCDG00000033730	ENSDCDG00000033727	ENSDCDG00000033723	STX11 (ENSDCDG00000033720)	STX11 (ENSDCDG00000033716)	mthfd1l (ENSDCDG00000033671) #16	akap12b (ENSDCDG00000033667) #17	zbtb2b (ENSDCDG00000033665) #18	armt1 (ENSDCDG00000033663) #20	esr1 (ENSDCDG00000033662) #22	ENSDCDG00000033660	myct1a (ENSDCDG00000033570) #26	serac1 (ENSDCDG00000033543)	gtf2h5 (ENSDCDG00000033540)	gja1b (ENSDCDG00000033539)	hsf2 (ENSDCDG00000033538)	serinc1 (ENSDCDG00000033333)	ENSDCDG00000033316	FABP7 (ENSDCDG00000033314)	smpdl3a (ENSDCDG00000033313)	clvs2 (ENSDCDG00000033312)	ENSDCDG00000033304	ENSDCDG00000033300	nkain2 (ENSDCDG00000033299)	rnf217 (ENSDCDG00000033296)
Euteleosteomorpha	ANCESTRAL SPECIES	81	ENSGT00940000156778.l	ENSGT00510000048701.a	ENSGT00950000182906.b.a.i.b	ENSGT00390000014904	ENSGT00940000162477.c	ENSGT01030000234595.A.b.a.b	ENSGT00950000183204.b.b.a	ENSGT00390000010101	ENSGT00940000153467.a.a	ENSGT01050000244948.c.b.a.b	ENSGT01050000244948.c.b.a.a.a	ENSGT00940000157477 #16	ENSGT00730000111244.a.b #17	ENSGT00940000158401 #18	ENSGT00530000064023 #20	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642.e #26	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000154531	ENSGT00390000007183	ENSGT00940000155913.d	ENSGT00390000009045	ENSGT01030000234809	ENSGT00530000063712.a.b	ENSGT00940000159266	ENSGT00550000074816.A.a	ENSGT01100000263595	ENSGT00390000015191	ENSGT00940000159969.b.a.a
Acanthomorphata	ANCESTRAL SPECIES	59	ENSGT00940000156778.l	ENSGT00510000048701.a	ENSGT00950000182906.b.a.i.b	ENSGT00390000014904	ENSGT00940000162477.c	ENSGT01030000234595.A.b.a.b	ENSGT00950000183204.b.b.a	ENSGT00390000010101	ENSGT00940000153467.a.a	ENSGT01050000244948.c.b.a.b	ENSGT01050000244948.c.b.a.a.a	ENSGT00940000157477 #16	ENSGT00730000111244.a.b #17	ENSGT00940000158401 #18	ENSGT00530000064023 #20	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642.e #26	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000154531	ENSGT00390000007183	ENSGT00940000155913.d	ENSGT00390000009045	ENSGT01030000234809	ENSGT00530000063712.a.b	ENSGT00940000159266	ENSGT00940000159634	ENSGT00530000063929.a.b	ENSGT00530000063695.b	ENSGT00950000183168.B.b
Euacanthomorphacea	ANCESTRAL SPECIES	13	ENSGT00940000156778.l	ENSGT00510000048701.a	ENSGT00950000182906.b.a.i.b	ENSGT00390000014904	ENSGT00940000162477.c	ENSGT01030000234595.A.b.a.b	ENSGT00950000183204.b.b.a	ENSGT00390000010101	ENSGT00940000153467.a.a	ENSGT01050000244948.c.b.a.b	ENSGT01050000244948.c.b.a.a.a	ENSGT00940000157477 #16	ENSGT00730000111244.a.b #17	ENSGT00940000158401 #18	ENSGT00530000064023 #20	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642.e #26	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000154531	ENSGT00390000007183	ENSGT00940000155913.d	ENSGT00390000009045	ENSGT01030000234809	ENSGT00530000063712.a.b	ENSGT00940000159266	ENSGT00940000159634	ENSGT00530000063929.a.b	ENSGT00530000063695.b	ENSGT00950000183168.B.b
Percomorphaceae	ANCESTRAL SPECIES	14	ENSGT00940000156778.l	ENSGT00510000048701.a	ENSGT00950000182906.b.a.i.b	ENSGT00390000014904	ENSGT00940000162477.c	ENSGT01030000234595.A.b.a.b	ENSGT00950000183204.b.b.a	ENSGT00390000010101	ENSGT00940000153467.a.a	ENSGT01050000244948.c.b.a.b	ENSGT01050000244948.c.b.a.a.a	ENSGT00940000157477 #16	ENSGT00730000111244.a.b #17	ENSGT00940000158401 #18	ENSGT00530000064023 #20	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642.e #26	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000154531	ENSGT00390000007183	ENSGT00940000155913.d	ENSGT00390000009045	ENSGT01030000234809	ENSGT00530000063712.a.b	ENSGT00940000159266	ENSGT00940000159634	ENSGT00530000063929.a.b	ENSGT00530000063695.b	ENSGT00950000183168.B.b
Percomorphaceae_B	ANCESTRAL SPECIES	18	ENSGT00510000048701.a	ENSGT00950000182906.b.a.i.b	ENSGT00390000014904	ENSGT00940000162477.c	ENSGT01030000234595.A.b.a.b	ENSGT00950000183204.b.b.a	ENSGT00940000156796.c.b	ENSGT00390000010101	ENSGT00940000153467.a.a	ENSGT01050000244948.c.b.a.b	ENSGT01050000244948.c.b.a.a.a	ENSGT00940000157477 #16	ENSGT00730000111244.a.b #17	ENSGT00940000158401 #18	ENSGT00530000064023 #20	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642.e #26	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000154531	ENSGT00390000007183	ENSGT00940000155913.d	ENSGT00390000009045	ENSGT01030000234809	ENSGT00530000063712.a.b	ENSGT00940000159266	ENSGT00940000159634	ENSGT00530000063929.a.b	ENSGT00530000063695.b	ENSGT00950000183168.B.b
Percomorphaceae_C	ANCESTRAL SPECIES	19	ENSGT00950000182906.b.a.i.b	ENSGT00390000014904	ENSGT00940000162477.c	ENSGT01030000234595.A.b.a.b	ENSGT00950000183204.b.b.a	ENSGT00940000156796.c.b	ENSGT00940000166257.k.a	ENSGT00390000010101	ENSGT00940000153467.a.a	ENSGT01050000244948.c.b.a.b	ENSGT01050000244948.c.b.a.a.a	ENSGT00940000157477 #16	ENSGT00730000111244.a.b #17	ENSGT00940000158401 #18	ENSGT00530000064023 #20	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642.e #26	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000154531	ENSGT00390000007183	ENSGT00940000155913.d	ENSGT00390000009045	ENSGT01030000234809	ENSGT00530000063712.a.b	ENSGT00940000159266	ENSGT00940000159634	ENSGT00530000063929.a.b	ENSGT00530000063695.b	ENSGT00950000183168.B.b
Percomorphaceae_D	ANCESTRAL SPECIES	18	ENSGT00390000014904	ENSGT00940000162477.c	ENSGT01030000234595.A.b.a.b	ENSGT00950000183204.b.b.a	ENSGT00940000166257.l	ENSGT00940000156796.c.b	ENSGT00940000166257.k.a	ENSGT00390000010101	ENSGT00940000153467.a.a	ENSGT01050000244948.c.b.a.b	ENSGT01050000244948.c.b.a.a.a	ENSGT00940000157477 #16	ENSGT00730000111244.a.b #17	ENSGT00940000158401 #18	ENSGT00530000064023 #20	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642.e #26	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000154531	ENSGT00390000007183	ENSGT00940000155913.d	ENSGT00390000009045	ENSGT01030000234809	ENSGT00530000063712.a.b	ENSGT00940000159266	ENSGT00940000159634	ENSGT00530000063929.a.b	ENSGT00530000063695.b	ENSGT00950000183168.B.b
Carangaria	ANCESTRAL SPECIES	18	ENSGT00390000014904	ENSGT00940000162477.c	ENSGT01030000234595.A.b.a.b	ENSGT00950000183204.b.b.a	ENSGT00940000161510	ENSGT00940000156796.c.b	ENSGT00940000166257.k.a	ENSGT00390000010101	ENSGT00940000153467.a.a	ENSGT01050000244948.c.b.a.b	ENSGT01050000244948.c.b.a.a.a	ENSGT00940000157477 #16	ENSGT00730000111244.a.b #17	ENSGT00940000158401 #18	ENSGT00530000064023 #20	ENSGT00940000158133 #22	ENSGT00940000154481.a.b.q #23	ENSGT01030000234944.A	ENSGT00940000176900.b	ENSGT00940000154481.a.b.r.b #23	ENSGT00390000011642.e #26	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000154531	ENSGT00390000007183	ENSGT00940000155913.d	ENSGT00390000009045	ENSGT01030000234809	ENSGT00530000063712.a.b	ENSGT00940000159266	ENSGT00940000159634
Pleuronectoidei	ANCESTRAL SPECIES	11	ENSGT00530000063408.A	ENSGT00940000156778.l	ENSGT00510000048701.a	ENSGT00950000182906.b.a.i.b	ENSGT00390000014904	ENSGT00940000162477.c	ENSGT01030000234595.A.b.a.b	ENSGT00950000183204.b.b.a	ENSGT00940000156796.c.b	ENSGT00390000010101	ENSGT01050000244948.c.b.a.a.a	ENSGT00940000157477 #16	ENSGT00730000111244.a.b #17	ENSGT00940000158401 #18	ENSGT00530000064023 #20	ENSGT00940000158133 #22	ENSGT00940000154481.a.b.q #23	ENSGT01030000234944.A	ENSGT00940000176900.b	ENSGT00940000154481.a.b.r.b #23	ENSGT00390000011642.e #26	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000154531	ENSGT00390000007183	ENSGT00940000155913.d	ENSGT00390000009045	ENSGT01030000234809	ENSGT00530000063712.a.b	ENSGT00940000159266	ENSGT00940000159634
Turbot	MODERN SPECIES	12	usta (ENSSMAG00000014602)	sash1a (ENSSMAG00000014648)	stxbp5a (ENSSMAG00000014794)	ENSSMAG00000021948	rab32a (ENSSMAG00000015000)	GRM1 (ENSSMAG00000015010)	ENSSMAG00000015033	ENSSMAG00000015048	ENSSMAG00000015167	EPM2A (ENSSMAG00000038108)	stx11b.1 (ENSSMAG00000016087)	mthfd1l (ENSSMAG00000016092) #16	akap12b (ENSSMAG00000016179) #17	zbtb2b (ENSSMAG00000033767) #18	armt1 (ENSSMAG00000035125) #20	esr1 (ENSSMAG00000016212) #22	myct1a (ENSSMAG00000024885) #26	serac1 (ENSSMAG00000016481)	gtf2h5 (ENSSMAG00000023490)	DYNLT1 (ENSSMAG00000024337)	tmem181 (ENSSMAG00000016523)	tulp4a (ENSSMAG00000016535)	mrps10 (ENSSMAG00000016563)	si:ch211-51e12.7 (ENSSMAG00000016566)	msgn1 (ENSSMAG00000016578)	ENSSMAG00000016588	PPIL6 (ENSSMAG00000016607)	cd164 (ENSSMAG00000016703)	cep57l1 (ENSSMAG00000016719)	sesn1 (ENSSMAG00000016729)	ARMC2 (ENSSMAG00000016776)
Tongue sole	MODERN SPECIES	17	ephx1 (ENSCSEG00000018424)	slc5a6a (ENSCSEG00000018413)	rpl7l1 (ENSCSEG00000018388)	GABRR1 (ENSCSEG00000018377)	ube2j1 (ENSCSEG00000018365)	GABRR2 (ENSCSEG00000018351)	ankrd6b (ENSCSEG00000018332)	LYRM2 (ENSCSEG00000018320)	MDN1 (ENSCSEG00000018255)	ENSCSEG00000018230	GJA10 (ENSCSEG00000018221)	BACH2 (ENSCSEG00000018218)	map3k7 (ENSCSEG00000018161)	zbtb2b (ENSCSEG00000018151) #18	armt1 (ENSCSEG00000018145) #20	esr1 (ENSCSEG00000017740) #22	ENSCSEG00000017723 #23	ENSCSEG00000017715 #23	ENSCSEG00000017704	ENSCSEG00000017701	ENSCSEG00000017679 #23	myct1a (ENSCSEG00000017674) #26	serac1 (ENSCSEG00000017667)	DYNLT1 (ENSCSEG00000017660)	tmem181 (ENSCSEG00000017623)	tulp4a (ENSCSEG00000017575)	mrps10 (ENSCSEG00000017554)	msgn1 (ENSCSEG00000017550)	ENSCSEG00000017535	ENSCSEG00000017532	ppil6 (ENSCSEG00000017527)
Carangaria_A	ANCESTRAL SPECIES	13	ENSGT00390000014904	ENSGT00940000162477.c	ENSGT01030000234595.A.b.a.b	ENSGT00950000183204.b.b.a	ENSGT00940000161510	ENSGT00940000156796.c.b	ENSGT00940000166257.k.a	ENSGT00390000010101	ENSGT00940000153467.a.a	ENSGT01050000244948.c.b.a.b	ENSGT01050000244948.c.b.a.a.a	ENSGT00940000157477 #16	ENSGT00730000111244.a.b #17	ENSGT00940000158401 #18	ENSGT00530000064023 #20	ENSGT00940000158133 #22	ENSGT00940000154481.a.b.r.b #23	ENSGT00390000011642.e #26	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000154531	ENSGT00390000007183	ENSGT00940000155913.d	ENSGT00390000009045	ENSGT01030000234809	ENSGT00530000063712.a.b	ENSGT00940000159266	ENSGT00940000159634	ENSGT00530000063929.a.b	ENSGT00530000063695.b	ENSGT00950000183168.B.b
Seriola	ANCESTRAL SPECIES	4	ENSGT01030000234595.A.b.a.b	ENSGT00950000183204.b.b.a	ENSGT00940000161510	ENSGT00940000156796.c.b.h	ENSGT00940000156796.c.b.g.a	ENSGT00940000166257.k.a	ENSGT00940000156796.c.b.g.b	ENSGT00390000010101	ENSGT00940000153467.a.a	ENSGT01050000244948.c.b.a.b	ENSGT01050000244948.c.b.a.a.a	ENSGT00940000157477 #16	ENSGT00730000111244.a.b #17	ENSGT00940000158401 #18	ENSGT00530000064023 #20	ENSGT00940000158133 #22	ENSGT00940000154481.a.b.r.b #23	ENSGT00390000011642.e #26	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000154531	ENSGT00390000007183	ENSGT00940000155913.d	ENSGT00390000009045.a	ENSGT01030000234809	ENSGT00530000063712.a.b	ENSGT00940000159266	ENSGT00940000159634	ENSGT00530000063929.a.b	ENSGT00530000063695.b	ENSGT00950000183168.B.b
Yellowtail amberjack	MODERN SPECIES	2754	GRM1 (ENSSLDG00000008493)	fbxo30b (ENSSLDG00000008541)	ENSSLDG00000008551	ENSSLDG00000008615	ENSSLDG00000008792	ENSSLDG00000008845	EPM2A (ENSSLDG00000008878)	ENSSLDG00000008915	UTRN (ENSSLDG00000009023)	STX11 (ENSSLDG00000009118)	stx11b.2 (ENSSLDG00000009127)	mthfd1l (ENSSLDG00000009155) #16	akap12b (ENSSLDG00000009208) #17	zbtb2b (ENSSLDG00000009220) #18	armt1 (ENSSLDG00000009229) #20	esr1 (ENSSLDG00000009247) #22
Greater amberjack	MODERN SPECIES	10	GRM1 (ENSSDUG00000017616)	fbxo30b (ENSSDUG00000017657)	ENSSDUG00000017695	ENSSDUG00000017723	ENSSDUG00000017847	ENSSDUG00000018165	EPM2A (ENSSDUG00000018519)	ENSSDUG00000018568	ENSSDUG00000018964	STX11 (ENSSDUG00000019002)	mthfd1l (ENSSDUG00000019009) #16	stx11b.2 (ENSSDUG00000019050)	akap12b (ENSSDUG00000019067) #17	zbtb2b (ENSSDUG00000019081) #18	armt1 (ENSSDUG00000019088) #20	esr1 (ENSSDUG00000019116) #22	SYNE1 (ENSSDUG00000019160) #23	ENSSDUG00000019285	ENSSDUG00000019298 #23	myct1a (ENSSDUG00000019417) #26	serac1 (ENSSDUG00000019422)	gtf2h5 (ENSSDUG00000019485)	DYNLT1 (ENSSDUG00000019503)	tmem181 (ENSSDUG00000019510)	tulp4a (ENSSDUG00000019540)	mrps10 (ENSSDUG00000019559)	si:ch211-51e12.7 (ENSSDUG00000019585)	msgn1 (ENSSDUG00000019597)	ENSSDUG00000019601	ENSSDUG00000019614	ppil6 (ENSSDUG00000019625)
Barramundi perch	MODERN SPECIES	168	stxbp5a (ENSLCAG00010008051)	ENSLCAG00010007913	ENSLCAG00010007911	rab32a (ENSLCAG00010007898)	GRM1 (ENSLCAG00010007893)	fbxo30b (ENSLCAG00010007888)	ENSLCAG00010007880	ENSLCAG00010007857	EPM2A (ENSLCAG00010007841)	UTRN (ENSLCAG00010006859)	stx11b.2 (ENSLCAG00010006520)	mthfd1l (ENSLCAG00010006481) #16	akap12b (ENSLCAG00010006460) #17	ENSLCAG00010006457 #18	armt1 (ENSLCAG00010006453) #20	esr1 (ENSLCAG00010006104) #22	ENSLCAG00010005971 #23	myct1a (ENSLCAG00010005957) #26	serac1 (ENSLCAG00010005948)	gtf2h5 (ENSLCAG00010005936)	DYNLT1 (ENSLCAG00010005926)	tmem181 (ENSLCAG00010005909)	tulp4a (ENSLCAG00010005899)	mrps10 (ENSLCAG00010005891)	msgn1 (ENSLCAG00010005884)	ppil6 (ENSLCAG00010005844)	cd164 (ENSLCAG00010005832)	ENSLCAG00010005827	ENSLCAG00010005824	sesn1 (ENSLCAG00010005805)	ARMC2 (ENSLCAG00010005792)
Anabantaria	ANCESTRAL SPECIES	20	ENSGT00530000063408.A	ENSGT00940000156778.l	ENSGT00510000048701.a	ENSGT00950000182906.b.a.i.b	ENSGT00390000014904	ENSGT00940000162477.c	ENSGT01030000234595.A.b.a.b	ENSGT00950000183204.b.b.a	ENSGT00390000010101	ENSGT00940000153467.a.a	ENSGT01050000244948.c.b.a.b	ENSGT01050000244948.c.b.a.a.a	ENSGT00940000157477 #16	ENSGT00940000158401 #18	ENSGT00530000064023 #20	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642.e #26	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000154531	ENSGT00390000007183	ENSGT00940000155913.d	ENSGT00390000009045	ENSGT01030000234809	ENSGT00530000063712.a.b	ENSGT00940000159266	ENSGT00940000159634	ENSGT00530000063929.a.b	ENSGT00530000063695.b	ENSGT00950000183168.B.b
Anabantoidei	ANCESTRAL SPECIES	15	ENSGT00940000156778.l	ENSGT00510000048701.a	ENSGT00950000182906.b.a.i.b	ENSGT00390000014904	ENSGT00940000162477.c	ENSGT01030000234595.A.b.a.b	ENSGT00950000183204.b.b.a	ENSGT00390000010101	ENSGT00940000153467.a.a	ENSGT01050000244948.c.b.a.b	ENSGT01050000244948.c.b.a.a.a	ENSGT00940000157477 #16	ENSGT00730000111244.a.b #17	ENSGT00940000158401 #18	ENSGT00530000064023 #20	ENSGT00940000158133 #22	ENSGT00390000011642.e #26	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000154531	ENSGT00390000007183	ENSGT00940000155913.d	ENSGT00390000009045	ENSGT01030000234809	ENSGT00530000063712.a.b	ENSGT00940000159266	ENSGT00940000159634	ENSGT00530000063929.a.b	ENSGT00530000063695.b	ENSGT00950000183168.B.b	ENSGT00390000000663
Climbing perch	MODERN SPECIES	15	usta (ENSATEG00000011404)	sash1a (ENSATEG00000011453)	stxbp5a (ENSATEG00000011503)	ENSATEG00000011619	rab32a (ENSATEG00000028293)	GRM1 (ENSATEG00000011648)	ENSATEG00000011683	EPM2A (ENSATEG00000028583)	ENSATEG00000011751	STX11 (ENSATEG00000012325)	stx11b.1 (ENSATEG00000012344)	mthfd1l (ENSATEG00000012355) #16	akap12b (ENSATEG00000012404) #17	zbtb2b (ENSATEG00000026691) #18	armt1 (ENSATEG00000026480) #20	esr1 (ENSATEG00000012427) #22	myct1a (ENSATEG00000012760) #26	serac1 (ENSATEG00000012777)	gtf2h5 (ENSATEG00000028411)	DYNLT1 (ENSATEG00000029921)	tmem181 (ENSATEG00000012888)	tulp4a (ENSATEG00000012950)	mrps10 (ENSATEG00000029736)	msgn1 (ENSATEG00000012980)	PPIL6 (ENSATEG00000013027)	cd164 (ENSATEG00000013091)	cep57l1 (ENSATEG00000013115)	sesn1 (ENSATEG00000013150)	ARMC2 (ENSATEG00000013216)	foxo3b (ENSATEG00000013282)	afg1lb (ENSATEG00000013291)
Siamese fighting fish	MODERN SPECIES	13	METTL24 (ENSBSLG00000023860)	slc22a16 (ENSBSLG00000023881)	usta (ENSBSLG00000023914)	SAMD5 (ENSBSLG00000023926)	stxbp5a (ENSBSLG00000023986)	ENSBSLG00000024306	rab32a (ENSBSLG00000024313)	GRM1 (ENSBSLG00000024316)	fbxo30b (ENSBSLG00000024318)	EPM2A (ENSBSLG00000024319)	UTRN (ENSBSLG00000024333)	stx11b.2 (ENSBSLG00000024397)	mthfd1l (ENSBSLG00000024569) #16	zbtb2b (ENSBSLG00000025174) #18	armt1 (ENSBSLG00000025176) #20	esr1 (ENSBSLG00000025188) #22	myct1a (ENSBSLG00000025380) #26	serac1 (ENSBSLG00000025467)	gtf2h5 (ENSBSLG00000025637)	DYNLT1 (ENSBSLG00000004931)	tulp4a (ENSBSLG00000005164)	mrps10 (ENSBSLG00000005219)	si:ch211-51e12.7 (ENSBSLG00000005244)	msgn1 (ENSBSLG00000005269)	ENSBSLG00000005284	ppil6 (ENSBSLG00000005364)	cd164 (ENSBSLG00000005429)	cep57l1 (ENSBSLG00000005450)	sesn1 (ENSBSLG00000005507)	ARMC2 (ENSBSLG00000005756)	foxo3b (ENSBSLG00000006344)
Zig-zag eel	MODERN SPECIES	16	ENSMAMG00000018936	ENSMAMG00000018925	ENSMAMG00000028338	ttll2 (ENSMAMG00000018897)	igf2r (ENSMAMG00000018681)	ENSMAMG00000018602	plg (ENSMAMG00000018133)	vgll2a (ENSMAMG00000025627)	ENSMAMG00000018018	tdrd15 (ENSMAMG00000026884)	ENSMAMG00000017926	ENSMAMG00000028494	ENSMAMG00000017880	zbtb2b (ENSMAMG00000027185) #18	armt1 (ENSMAMG00000026996) #20	esr1 (ENSMAMG00000008394) #22	SYNE1 (ENSMAMG00000008123) #23	myct1a (ENSMAMG00000008042) #26	serac1 (ENSMAMG00000008004)	ENSMAMG00000007785	gtf2h5 (ENSMAMG00000007996)	DYNLT1 (ENSMAMG00000007682)	ENSMAMG00000027760	DYNLT1 (ENSMAMG00000007617)	tmem181 (ENSMAMG00000007571)	tulp4a (ENSMAMG00000007526)	mrps10 (ENSMAMG00000007501)	msgn1 (ENSMAMG00000007470)	ENSMAMG00000007461	PPIL6 (ENSMAMG00000007446)	cd164 (ENSMAMG00000007441)
Eupercaria	ANCESTRAL SPECIES	16	ENSGT00510000048701.a	ENSGT00950000182906.b.a.i.b	ENSGT00390000014904	ENSGT00940000162477.c	ENSGT01030000234595.A.b.a.b	ENSGT00950000183204.b.b.a	ENSGT00940000156796.c.b	ENSGT00390000010101	ENSGT00940000153467.a.a	ENSGT01050000244948.c.b.a.b	ENSGT01050000244948.c.b.a.a.a	ENSGT00940000157477 #16	ENSGT00730000111244.a.b #17	ENSGT00940000158401 #18	ENSGT00530000064023 #20	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642.e #26	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000154531	ENSGT00390000007183	ENSGT00940000155913.d	ENSGT00390000009045	ENSGT01030000234809	ENSGT00530000063712.a.b	ENSGT00940000159266	ENSGT00940000159634	ENSGT00530000063929.a.b	ENSGT00530000063695.b	ENSGT00950000183168.B.b
Tetraodontidae	ANCESTRAL SPECIES	15	ENSGT00950000182906.b.a.i.b	ENSGT00390000014904.q	ENSGT00940000162477.c	ENSGT01030000234595.A.b.a.b	ENSGT00950000183204.b.b.a	ENSGT00940000156796.c.b	ENSGT00390000010101	ENSGT00940000173513.b	ENSGT00940000153467.a.a	ENSGT01050000244948.c.b.a.b	ENSGT01050000244948.c.b.a.a.a	ENSGT00940000157477 #16	ENSGT00730000111244.a.b #17	ENSGT00940000158401 #18	ENSGT00530000064023 #20	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642.e #26	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000154531	ENSGT00390000007183	ENSGT00940000155913.d	ENSGT00390000009045	ENSGT00530000063712.a.b	ENSGT00940000159266	ENSGT00390000002032	ENSGT00940000159634	ENSGT00530000063929.a.b	ENSGT00530000063695.b	ENSGT00950000183168.B.b
Fugu	MODERN SPECIES	7	ENSTRUG00000020758	rab32 (ENSTRUG00000009023)	GRM1 (ENSTRUG00000018354)	fbxo30b (ENSTRUG00000018349)	ENSTRUG00000018336	ENSTRUG00000022472	ENSTRUG00000032195	EPM2A (ENSTRUG00000018322)	ENSTRUG00000018327	UTRN (ENSTRUG00000018246)	stx11b.2 (ENSTRUG00000002583)	mthfd1l (ENSTRUG00000024369) #16	akap12b (ENSTRUG00000018243) #17	zbtb2b (ENSTRUG00000018234) #18	armt1 (ENSTRUG00000018219) #20	esr1 (ENSTRUG00000025100) #22	ENSTRUG00000028350	ENSTRUG00000029565	ENSTRUG00000033396	myct1a (ENSTRUG00000018174) #26	serac1 (ENSTRUG00000018150)	gtf2h5 (ENSTRUG00000023578)	THBS1 (ENSTRUG00000018123)	gpr176 (ENSTRUG00000018121)	katnbl1 (ENSTRUG00000018118)	emc7b (ENSTRUG00000032743)	chrm5b (ENSTRUG00000018108)	aven (ENSTRUG00000024424)	FMN1 (ENSTRUG00000029923)	GREM1 (ENSTRUG00000018024)	SCG5 (ENSTRUG00000018017)
Tetraodon	MODERN SPECIES	5	stxbp5a (ENSTNIG00000012252)	ENSTNIG00000012253	rab32a (ENSTNIG00000012254)	GRM1 (ENSTNIG00000012255)	fbxo30b (ENSTNIG00000012256)	ENSTNIG00000012257	EPM2A (ENSTNIG00000012258)	ENSTNIG00000000487	UTRN (ENSTNIG00000012259)	STX11 (ENSTNIG00000012260)	stx11b.2 (ENSTNIG00000012261)	mthfd1l (ENSTNIG00000012262) #16	akap12b (ENSTNIG00000000253) #17	zbtb2b (ENSTNIG00000012263) #18	armt1 (ENSTNIG00000001188) #20	esr1 (ENSTNIG00000012264) #22	SYNE1 (ENSTNIG00000012265) #23	serac1 (ENSTNIG00000012266)	gtf2h5 (ENSTNIG00000012267)	DYNLT1 (ENSTNIG00000012268)	tmem181 (ENSTNIG00000012269)	tulp4a (ENSTNIG00000012270)	mrps10 (ENSTNIG00000012271)	msgn1 (ENSTNIG00000001511)	ENSTNIG00000012272	L3HYPDH (ENSTNIG00000012273)	ppil6 (ENSTNIG00000012274)	cd164 (ENSTNIG00000012275)	cep57l1 (ENSTNIG00000012276)	sesn1 (ENSTNIG00000012277)	ARMC2 (ENSTNIG00000012278)
Eupecaria_A	ANCESTRAL SPECIES	16	ENSGT00950000182906.b.a.i.b	ENSGT00390000014904	ENSGT00940000162477.c	ENSGT01030000234595.A.b.a.b	ENSGT00950000183204.b.b.a	ENSGT00940000161510.cb	ENSGT00940000156796.c.b	ENSGT00390000010101	ENSGT00940000153467.a.a	ENSGT01050000244948.c.b.a.b	ENSGT01050000244948.c.b.a.a.a	ENSGT00940000157477 #16	ENSGT00730000111244.a.b #17	ENSGT00940000158401 #18	ENSGT00530000064023 #20	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642.e #26	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000154531	ENSGT00390000007183	ENSGT00940000155913.d	ENSGT00390000009045	ENSGT01030000234809	ENSGT00530000063712.a.b	ENSGT00940000159266	ENSGT00940000159634	ENSGT00530000063929.a.b	ENSGT00530000063695.b	ENSGT00950000183168.B.b
Ballan wrasse	MODERN SPECIES	52	stxbp5a (ENSLBEG00000019990)	ENSLBEG00000019941	rab32a (ENSLBEG00000019925)	GRM1 (ENSLBEG00000019880)	fbxo30b (ENSLBEG00000019852)	ENSLBEG00000019579	EPM2A (ENSLBEG00000019535)	ENSLBEG00000019505	ENSLBEG00000019366	ENSLBEG00000019303	STX11 (ENSLBEG00000019267)	mthfd1l (ENSLBEG00000019249) #16	akap12b (ENSLBEG00000019227) #17	zbtb2b (ENSLBEG00000019211) #18	armt1 (ENSLBEG00000019163) #20	esr1 (ENSLBEG00000016616) #22	SYNE1 (ENSLBEG00000015496) #23	ENSLBEG00000015458	ENSLBEG00000015270 #23	myct1a (ENSLBEG00000015172) #26	serac1 (ENSLBEG00000015104)	gtf2h5 (ENSLBEG00000015068)	DYNLT1 (ENSLBEG00000014968)	tmem181 (ENSLBEG00000014923)	tulp4a (ENSLBEG00000014805)	mrps10 (ENSLBEG00000014754)	si:ch211-51e12.7 (ENSLBEG00000014729)	msgn1 (ENSLBEG00000014718)	ENSLBEG00000014695	ENSLBEG00000014667	ppil6 (ENSLBEG00000014644)
Eupecaria_B	ANCESTRAL SPECIES	16	ENSGT00950000182906.b.a.i.b	ENSGT00390000014904	ENSGT00940000162477.c	ENSGT01030000234595.A.b.a.b	ENSGT00950000183204.b.b.a	ENSGT00940000161510.cb	ENSGT00940000156796.c.b	ENSGT00390000010101	ENSGT00940000153467.a.a	ENSGT01050000244948.c.b.a.b	ENSGT01050000244948.c.b.a.a.a	ENSGT00940000157477 #16	ENSGT00730000111244.a.b #17	ENSGT00940000158401 #18	ENSGT00530000064023 #20	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642.e #26	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000154531	ENSGT00390000007183	ENSGT00940000155913.d	ENSGT00390000009045	ENSGT01030000234809	ENSGT00530000063712.a.b	ENSGT00940000159266	ENSGT00940000159634	ENSGT00530000063929.a.b	ENSGT00530000063695.b	ENSGT00950000183168.B.b
Eupecaria_C	ANCESTRAL SPECIES	16	ENSGT00950000182906.b.a.i.b	ENSGT00390000014904	ENSGT00940000162477.c	ENSGT01030000234595.A.b.a.b	ENSGT00950000183204.b.b.a	ENSGT00940000161510.cb	ENSGT00940000156796.c.b	ENSGT00390000010101	ENSGT00940000153467.a.a	ENSGT01050000244948.c.b.a.b	ENSGT01050000244948.c.b.a.a.a	ENSGT00940000157477 #16	ENSGT00730000111244.a.b #17	ENSGT00940000158401 #18	ENSGT00530000064023 #20	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642.e #26	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000154531	ENSGT00390000007183	ENSGT00940000155913.d	ENSGT00390000009045	ENSGT01030000234809	ENSGT00530000063712.a.b	ENSGT00940000159266	ENSGT00940000159634	ENSGT00530000063929.a.b	ENSGT00530000063695.b	ENSGT00950000183168.B.b
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	11	ENSGT00950000182906.b.a.i.b	ENSGT00390000014904	ENSGT00940000162477.c	ENSGT01030000234595.A.b.a.b	ENSGT00950000183204.b.b.a	ENSGT00940000161510.cb	ENSGT00940000156796.c.b	ENSGT00390000010101	ENSGT00940000153467.a.a	ENSGT01050000244948.c.b.a.b	ENSGT01050000244948.c.b.a.a.a	ENSGT00940000157477 #16	ENSGT00730000111244.a.b #17	ENSGT00940000158401 #18	ENSGT00530000064023 #20	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642.e #26	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000154531	ENSGT00390000007183	ENSGT00940000155913.d	ENSGT00390000009045	ENSGT01030000234809	ENSGT00530000063712.a.b	ENSGT00940000159266	ENSGT00940000159634	ENSGT00530000063929.a.b	ENSGT00530000063695.b	ENSGT00950000183168.B.b
European seabass	MODERN SPECIES	7	stxbp5a (ENSDLAG00005011000)	ADGB (ENSDLAG00005010905)	rab32a (ENSDLAG00005032078)	GRM1 (ENSDLAG00005010860)	ENSDLAG00005010852	ENSDLAG00005010745	ENSDLAG00005010595	EPM2A (ENSDLAG00005010581)	ENSDLAG00005005786	STX11 (ENSDLAG00005026954)	stx11b.1 (ENSDLAG00005028721)	mthfd1l (ENSDLAG00005001497) #16	akap12b (ENSDLAG00005001190) #17	zbtb2b (ENSDLAG00005026784) #18	armt1 (ENSDLAG00005032262) #20	esr1 (ENSDLAG00005001062) #22	serac1 (ENSDLAG00005000296)	ENSDLAG00005000565 #23	DYNLT1 (ENSDLAG00005000232)	tmem181 (ENSDLAG00005000181)	tulp4a (ENSDLAG00005020512)	mrps10 (ENSDLAG00005020502)	ENSDLAG00005032650	ENSDLAG00005030866	PPIL6 (ENSDLAG00005026853)	cep57l1 (ENSDLAG00005034480)	sesn1 (ENSDLAG00005020385)	ARMC2 (ENSDLAG00005020331)	foxo3b (ENSDLAG00005020324)	afg1lb (ENSDLAG00005020306)	snx3 (ENSDLAG00005029627)
Large yellow croaker	MODERN SPECIES	482	sash1a (ENSLCRG00005002588)	stxbp5a (ENSLCRG00005000652)	ENSLCRG00005016102	rab32a (ENSLCRG00005016101)	GRM1 (ENSLCRG00005016100)	fbxo30b (ENSLCRG00005016098)	ENSLCRG00005016097	ENSLCRG00005016094	EPM2A (ENSLCRG00005016092)	UTRN (ENSLCRG00005011040)	stx11b.2 (ENSLCRG00005010998)	mthfd1l (ENSLCRG00005008614) #16	akap12b (ENSLCRG00005008594) #17	zbtb2b (ENSLCRG00005008592) #18	armt1 (ENSLCRG00005008591) #20	esr1 (ENSLCRG00005008511) #22	myct1a (ENSLCRG00005008419) #26	serac1 (ENSLCRG00005007759)	gtf2h5 (ENSLCRG00005007754)	DYNLT1 (ENSLCRG00005007748)	tmem181 (ENSLCRG00005007747)	tulp4a (ENSLCRG00005007746)	mrps10 (ENSLCRG00005007745)	si:ch211-51e12.7 (ENSLCRG00005007743)	msgn1 (ENSLCRG00005007741)	GEN1 (ENSLCRG00005007739)	ppil6 (ENSLCRG00005007738)	cd164 (ENSLCRG00005007736)	cep57l1 (ENSLCRG00005007735)	sesn1 (ENSLCRG00005007734)	ARMC2 (ENSLCRG00005007733)
Gilthead seabream	MODERN SPECIES	14	fbxo30b (ENSSAUG00010018000)	ENSSAUG00010017995	ENSSAUG00010017984	ENSSAUG00010017927	ENSSAUG00010017890	ENSSAUG00010017886	ENSSAUG00010017885	EPM2A (ENSSAUG00010017884)	UTRN (ENSSAUG00010016677)	STX11 (ENSSAUG00010016630)	stx11b.2 (ENSSAUG00010016628)	mthfd1l (ENSSAUG00010011834) #16	akap12b (ENSSAUG00010011727) #17	zbtb2b (ENSSAUG00010011724) #18	armt1 (ENSSAUG00010011723) #20	esr1 (ENSSAUG00010010150) #22	myct1a (ENSSAUG00010009891) #26	serac1 (ENSSAUG00010009687)	gtf2h5 (ENSSAUG00010009668)	DYNLT1 (ENSSAUG00010009659)	tmem181 (ENSSAUG00010009650)	tulp4a (ENSSAUG00010009631)	mrps10 (ENSSAUG00010009627)	si:ch211-51e12.7 (ENSSAUG00010009624)	msgn1 (ENSSAUG00010009621)	ENSSAUG00010009615	ppil6 (ENSSAUG00010009611)	cd164 (ENSSAUG00010009609)	cep57l1 (ENSSAUG00010009608)	sesn1 (ENSSAUG00010009605)	ARMC2 (ENSSAUG00010009600)
Perciformes	ANCESTRAL SPECIES	14	ENSGT00510000048701.a	ENSGT00950000182906.b.a.i.b	ENSGT00390000014904	ENSGT00940000162477.c	ENSGT01030000234595.A.b.a.b	ENSGT00950000183204.b.b.a	ENSGT00940000161510.cb	ENSGT00940000156796.c.b	ENSGT00390000010101	ENSGT00940000153467.a.a	ENSGT01050000244948.c.b.a.a.a	ENSGT00940000157477 #16	ENSGT00730000111244.a.b #17	ENSGT00940000158401 #18	ENSGT00530000064023 #20	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642.e #26	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000154531	ENSGT00390000007183	ENSGT00940000155913.d	ENSGT00390000009045	ENSGT01030000234809	ENSGT00530000063712.a.b	ENSGT00940000159266	ENSGT00940000159634	ENSGT00530000063929.a.b	ENSGT00530000063695.b	ENSGT00950000183168.B.b
Perciformes_a	ANCESTRAL SPECIES	15	ENSGT00940000156778.l	ENSGT00950000182906.b.a.i.b	ENSGT00390000014904	ENSGT00940000162477.c	ENSGT01030000234595.A.b.a.b	ENSGT00950000183204.b.b.a	ENSGT00940000161510.cb	ENSGT00940000156796.c.b	ENSGT00390000010101	ENSGT00940000153467.a.a	ENSGT01050000244948.c.b.a.a.a	ENSGT00940000157477 #16	ENSGT00730000111244.a.b #17	ENSGT00940000158401 #18	ENSGT00530000064023 #20	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642.e #26	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000154531	ENSGT00390000007183	ENSGT00940000155913.d	ENSGT00390000009045	ENSGT01030000234809	ENSGT00530000063712.a.b	ENSGT00940000159266	ENSGT00940000159634	ENSGT00530000063929.a.b	ENSGT00530000063695.b	ENSGT00950000183168.B.b
Channel bull blenny	MODERN SPECIES	16	ENSCGOG00000013645	rab32a (ENSCGOG00000013643)	GRM1 (ENSCGOG00000013134)	fbxo30b (ENSCGOG00000013102)	ENSCGOG00000013063	ENSCGOG00000012905	ENSCGOG00000012764	EPM2A (ENSCGOG00000012758)	ENSCGOG00000012757	UTRN (ENSCGOG00000012219)	stx11b.2 (ENSCGOG00000012171)	mthfd1l (ENSCGOG00000007998) #16	akap12b (ENSCGOG00000007875) #17	zbtb2b (ENSCGOG00000007874) #18	armt1 (ENSCGOG00000007873) #20	esr1 (ENSCGOG00000006892) #22	ENSCGOG00000006654 #23	myct1a (ENSCGOG00000006652) #26	serac1 (ENSCGOG00000006464)	gtf2h5 (ENSCGOG00000006453)	DYNLT1 (ENSCGOG00000006446)	tmem181 (ENSCGOG00000006339)	tulp4a (ENSCGOG00000006117)	mrps10 (ENSCGOG00000006107)	si:ch211-51e12.7 (ENSCGOG00000006102)	msgn1 (ENSCGOG00000006099)	ENSCGOG00000006080	ppil6 (ENSCGOG00000006022)	cd164 (ENSCGOG00000006021)	cep57l1 (ENSCGOG00000006019)	sesn1 (ENSCGOG00000006017)
Pike perch	MODERN SPECIES	4	sash1a (ENSSLUG00000023425)	stxbp5a (ENSSLUG00000023198)	ENSSLUG00000023174	rab32a (ENSSLUG00000023170)	GRM1 (ENSSLUG00000023167)	fbxo30b (ENSSLUG00000023162)	ENSSLUG00000023146	ENSSLUG00000023109	EPM2A (ENSSLUG00000023100)	UTRN (ENSSLUG00000011798)	stx11b.2 (ENSSLUG00000011171)	mthfd1l (ENSSLUG00000006391) #16	akap12b (ENSSLUG00000006112) #17	zbtb2b (ENSSLUG00000006099) #18	armt1 (ENSSLUG00000006091) #20	esr1 (ENSSLUG00000004654) #22	SYNE1 (ENSSLUG00000003875) #23	myct1a (ENSSLUG00000003747) #26	serac1 (ENSSLUG00000003411)	gtf2h5 (ENSSLUG00000003359)	DYNLT1 (ENSSLUG00000007839)	tmem181 (ENSSLUG00000007791)	tulp4a (ENSSLUG00000007705)	mrps10 (ENSSLUG00000007674)	si:ch211-51e12.7 (ENSSLUG00000007671)	msgn1 (ENSSLUG00000007661)	ppil6 (ENSSLUG00000007643)	cd164 (ENSSLUG00000007638)	cep57l1 (ENSSLUG00000007623)	sesn1 (ENSSLUG00000007600)	ARMC2 (ENSSLUG00000007561)
Cottioidei	ANCESTRAL SPECIES	25										ENSGT00940000153467.a.a	ENSGT01050000244948.c.b.a.a.a	ENSGT00940000157477 #16	ENSGT00730000111244.a.b #17	ENSGT00940000158401 #18	ENSGT00530000064023 #20	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642.e #26	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000154531	ENSGT00390000007183	ENSGT00940000155913.d	ENSGT00390000009045	ENSGT00530000063712.a.b	ENSGT00940000159266	ENSGT00940000159634	ENSGT00530000063929.a.b	ENSGT00530000063695.b	ENSGT00950000183168.B.b	ENSGT00390000000663
Lumpfish	MODERN SPECIES	16	cnr1 (ENSCLMG00005012633)	akirin2 (ENSCLMG00005012634)	ENSCLMG00005012635	ENSCLMG00005012652	ENSCLMG00005012696	ENSCLMG00005012731	EPM2A (ENSCLMG00005013024)	CEBPZ (ENSCLMG00005013025)	ndufaf7 (ENSCLMG00005013026)	UTRN (ENSCLMG00005013030)	stx11b.2 (ENSCLMG00005013050)	mthfd1l (ENSCLMG00005013064) #16	akap12b (ENSCLMG00005015366) #17	zbtb2b (ENSCLMG00005015367) #18	armt1 (ENSCLMG00005015368) #20	esr1 (ENSCLMG00005015382) #22	ENSCLMG00005016413 #23	ENSCLMG00005016455	ENSCLMG00005016456	ENSCLMG00005016461 #23	myct1a (ENSCLMG00005016478) #26	serac1 (ENSCLMG00005016480)	gtf2h5 (ENSCLMG00005016553)	DYNLT1 (ENSCLMG00005016555)	tmem181 (ENSCLMG00005016558)	tulp4a (ENSCLMG00005016567)	mrps10 (ENSCLMG00005016571)	msgn1 (ENSCLMG00005016574)	ENSCLMG00005016575	ENSCLMG00005016576	ppil6 (ENSCLMG00005016579)
Stickleback	MODERN SPECIES	18	cpsf2 (ENSGACG00000008418)	SLC24A4 (ENSGACG00000008433)	ENSGACG00000008446	tmem121ab (ENSGACG00000008452)	FUT8 (ENSGACG00000008454)	gphnb (ENSGACG00000008491)	pals1b (ENSGACG00000008518)	atp6v1d (ENSGACG00000008522)	eif2s1b (ENSGACG00000008569)	UTRN (ENSGACG00000008623)	stx11b.2 (ENSGACG00000008654)	mthfd1l (ENSGACG00000008664) #16	ENSGACG00000008690	zbtb2b (ENSGACG00000008691) #18	armt1 (ENSGACG00000008692) #20	esr1 (ENSGACG00000008711) #22	SYNE1 (ENSGACG00000008721) #23	myct1a (ENSGACG00000008796) #26	serac1 (ENSGACG00000008797)	gtf2h5 (ENSGACG00000008827)	tmem181 (ENSGACG00000008833)	tulp4a (ENSGACG00000008851)	mrps10 (ENSGACG00000008859)	msgn1 (ENSGACG00000008864)	msgn1 (ENSGACG00000008865)	GEN1 (ENSGACG00000008868)	ppil6 (ENSGACG00000008871)	cd164 (ENSGACG00000008876)	cep57l1 (ENSGACG00000008882)	sesn1 (ENSGACG00000008895)	ARMC2 (ENSGACG00000008903)
Ovalentaria	ANCESTRAL SPECIES	19	ENSGT00510000048701.a	ENSGT00950000182906.b.a.i.b	ENSGT00390000014904	ENSGT00940000162477.c	ENSGT01030000234595.A.b.a.b	ENSGT00950000183204.b.b.a	ENSGT00940000156796.c.b	ENSGT00390000010101	ENSGT00940000153467.a.a	ENSGT01050000244948.c.b.a.b	ENSGT01050000244948.c.b.a.a.a	ENSGT00940000157477 #16	ENSGT00730000111244.a.b #17	ENSGT00940000158401 #18	ENSGT00530000064023 #20	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642.e #26	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000154531	ENSGT00390000007183	ENSGT00940000155913.d	ENSGT00390000009045	ENSGT01030000234809	ENSGT00530000063712.a.b	ENSGT00940000159266	ENSGT00940000159634	ENSGT00530000063929.a.b	ENSGT00530000063695.b	ENSGT00950000183168.B.b
Atherinomorphae	ANCESTRAL SPECIES	18	ENSGT00510000048701.a	ENSGT00950000182906.b.a.i.b	ENSGT00390000014904	ENSGT00940000162477.c	ENSGT01030000234595.A.b.a.b	ENSGT00950000183204.b.b.a	ENSGT00940000156796.c.b	ENSGT00390000010101	ENSGT00940000153467.a.a	ENSGT01050000244948.c.b.a.b	ENSGT01050000244948.c.b.a.a.a	ENSGT00940000157477 #16	ENSGT00730000111244.a.b #17	ENSGT00940000158401 #18	ENSGT00530000064023 #20	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642.e #26	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000154531	ENSGT00390000007183	ENSGT00940000155913.d	ENSGT00390000009045	ENSGT01030000234809	ENSGT00530000063712.a.b	ENSGT00940000159266	ENSGT00940000159634	ENSGT00530000063929.a.b	ENSGT00530000063695.b	ENSGT00950000183168.B.b
Cyprinodontiformes	ANCESTRAL SPECIES	14	ENSGT00510000048701.a	ENSGT00950000182906.b.a.i.b	ENSGT00390000014904	ENSGT00940000162477.c	ENSGT01030000234595.A.b.a.b	ENSGT00950000183204.b.b.a	ENSGT00940000156796.c.b	ENSGT00390000010101	ENSGT00940000153467.a.a	ENSGT01050000244948.c.b.a.b	ENSGT01050000244948.c.b.a.a.a	ENSGT00940000157477 #16	ENSGT00730000111244.a.b #17	ENSGT00940000158401 #18	ENSGT00530000064023 #20	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642.e #26	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000154531	ENSGT00390000007183	ENSGT00940000155913.d	ENSGT00390000009045	ENSGT01030000234809	ENSGT00530000063712.a.b	ENSGT00940000159266	ENSGT00940000159634	ENSGT00530000063929.a.b	ENSGT00530000063695.b	ENSGT00950000183168.B.b
Aplocheiloidei	ANCESTRAL SPECIES	36	ENSGT00950000182906.b.a.i.b	ENSGT00390000014904	ENSGT00940000162477.c	ENSGT01030000234595.A.b.a.b	ENSGT00950000183204.b.b.a	ENSGT00940000156796.c.b	ENSGT00390000010101	ENSGT00940000153467.a.a	ENSGT01050000244948.c.b.a.b	ENSGT01030000237157	ENSGT01050000244948.c.b.a.a.a	ENSGT00940000157477 #16	ENSGT00730000111244.a.b #17	ENSGT00940000158401 #18	ENSGT00530000064023 #20	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642.e #26	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000154531	ENSGT00390000007183	ENSGT00940000155913.d	ENSGT00390000009045	ENSGT01030000234809	ENSGT00530000063712.a.b	ENSGT00940000159266	ENSGT00940000159634	ENSGT00530000063929.a.b	ENSGT00530000063695.b	ENSGT00950000183168.B.b
Mangrove rivulus	MODERN SPECIES	70	stxbp5a (ENSKMAG00000010368)	ENSKMAG00000010294	ENSKMAG00000010275	rab32a (ENSKMAG00000010259)	GRM1 (ENSKMAG00000010203)	fbxo30b (ENSKMAG00000010173)	ENSKMAG00000010151	EPM2A (ENSKMAG00000010132)	UTRN (ENSKMAG00000009723)	STX11 (ENSKMAG00000009616)	stx11b.2 (ENSKMAG00000009601)	mthfd1l (ENSKMAG00000009558) #16	akap12b (ENSKMAG00000009529) #17	zbtb2b (ENSKMAG00000009506) #18	armt1 (ENSKMAG00000009490) #20	esr1 (ENSKMAG00000009365) #22	ENSKMAG00000009198 #23	ENSKMAG00000009164	ENSKMAG00000009084	ENSKMAG00000009021 #23	myct1a (ENSKMAG00000009009) #26	serac1 (ENSKMAG00000008984)	gtf2h5 (ENSKMAG00000008960)	DYNLT1 (ENSKMAG00000008943)	tmem181 (ENSKMAG00000008899)	tulp4a (ENSKMAG00000008810)	mrps10 (ENSKMAG00000008782)	si:ch211-51e12.7 (ENSKMAG00000008764)	msgn1 (ENSKMAG00000008752)	ENSKMAG00000008741	ENSKMAG00000008718
Turquoise killifish	MODERN SPECIES	1613	ENSNFUG00015003224	fbxo30b (ENSNFUG00015003214)	GRM1 (ENSNFUG00015003205)	RAB32A (ENSNFUG00015003194)	stxbp5a (ENSNFUG00015003084)	SAMD5 (ENSNFUG00015003021)	sash1a (ENSNFUG00015002986)	ENSNFUG00015002974	UST (ENSNFUG00015002971)	ENSNFUG00015002967	stx11b.2 (ENSNFUG00015002963)	mthfd1l (ENSNFUG00015002402) #16	AKAP12B (ENSNFUG00015002267) #17	ZBTB2B (ENSNFUG00015002264) #18	C20H6ORF211 (ENSNFUG00015002258) #20	esr1 (ENSNFUG00015002138) #22	myct1a (ENSNFUG00015001326) #26	serac1 (ENSNFUG00015001244)	gtf2h5 (ENSNFUG00015001222)	ENSNFUG00015001219	DYNLT1 (ENSNFUG00015001216)	tmem181 (ENSNFUG00015001187)	TULP4 (ENSNFUG00015001165)	MRPS10 (ENSNFUG00015001149)	msgn1 (ENSNFUG00015001144)	ENSNFUG00015001138	PPIL6 (ENSNFUG00015001133)	cd164 (ENSNFUG00015001132)	CEP57L1 (ENSNFUG00015001128)	sesn1 (ENSNFUG00015001099)	ARMC2 (ENSNFUG00015001065)
Cyprinodontoidei	ANCESTRAL SPECIES	12	ENSGT00950000182906.b.a.i.b	ENSGT00390000014904	ENSGT00940000162477.c	ENSGT01030000234595.A.b.a.b	ENSGT00950000183204.b.b.a.d	ENSGT00950000183204.b.b.a.c	ENSGT00940000156796.c.b	ENSGT00390000010101	ENSGT00940000153467.a.a	ENSGT01050000244948.c.b.a.b	ENSGT01050000244948.c.b.a.a.a	ENSGT00940000157477 #16	ENSGT00730000111244.a.b #17	ENSGT00940000158401 #18	ENSGT00530000064023 #20	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642.e #26	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000154531	ENSGT00390000007183	ENSGT00940000155913.d	ENSGT00390000009045	ENSGT01030000234809	ENSGT00530000063712.a.b	ENSGT00940000159266	ENSGT00940000159634	ENSGT00530000063929.a.b	ENSGT00530000063695.b	ENSGT00950000183168.B.b
NAME_4	ANCESTRAL SPECIES	8	ENSGT00950000182906.b.a.i.b	ENSGT00390000014904	ENSGT00940000162477.c	ENSGT01030000234595.A.b.a.b	ENSGT00950000183204.b.b.a.d	ENSGT00950000183204.b.b.a.c	ENSGT00940000156796.c.b	ENSGT00390000010101	ENSGT00940000153467.a.a	ENSGT01050000244948.c.b.a.b	ENSGT01050000244948.c.b.a.a.a	ENSGT00940000157477 #16	ENSGT00730000111244.a.b #17	ENSGT00940000158401 #18	ENSGT00530000064023 #20	ENSGT00940000158133 #22	ENSGT00940000154481.a.b.gb.a #23	ENSGT01030000234944.A	ENSGT00940000176900.b	ENSGT00940000154481.a.b.gb.b #23	ENSGT00390000011642.e #26	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000154531	ENSGT00390000007183	ENSGT00940000155913.d	ENSGT00390000009045	ENSGT01030000234809	ENSGT00530000063712.a.b	ENSGT00940000159266	ENSGT00940000159634
Sheepshead minnow	DUPLICATION
Sheepshead minnow	MODERN SPECIES	150																esr1 (ENSCVAG00000001551) #22	ENSCVAG00000001570 #23	ENSCVAG00000001580	ENSCVAG00000001583	ENSCVAG00000001593 #23	myct1a (ENSCVAG00000001595) #26	serac1 (ENSCVAG00000001608)	gtf2h5 (ENSCVAG00000001613)	DYNLT1 (ENSCVAG00000001615)	tmem181 (ENSCVAG00000001626)	tulp4a (ENSCVAG00000001646)	mrps10 (ENSCVAG00000001649)	si:ch211-51e12.7 (ENSCVAG00000001653)	msgn1 (ENSCVAG00000001655)	ENSCVAG00000001658	ENSCVAG00000001660
Sheepshead minnow	MODERN SPECIES	1263								XXYLT1 (ENSCVAG00000010654)	srsf11 (ENSCVAG00000010634)	ENSCVAG00000010621	stx11b.2 (ENSCVAG00000010606)	mthfd1l (ENSCVAG00000010594) #16	akap12b (ENSCVAG00000010576) #17	zbtb2b (ENSCVAG00000010571) #18	armt1 (ENSCVAG00000010566) #20	esr1 (ENSCVAG00000010549) #22
Mummichog	MODERN SPECIES	2240	stxbp5a (ENSFHEG00000001003)	ENSFHEG00000000999	rab32a (ENSFHEG00000000997)	GRM1 (ENSFHEG00000000995)	fbxo30b (ENSFHEG00000000993)	ALOXE3 (ENSFHEG00000000991)	EPM2A (ENSFHEG00000000986)	ENSFHEG00000000980	UTRN (ENSFHEG00000000967)	STX11 (ENSFHEG00000000963)	stx11b.2 (ENSFHEG00000000962)	mthfd1l (ENSFHEG00000000959) #16	akap12b (ENSFHEG00000000954) #17	zbtb2b (ENSFHEG00000000951) #18	armt1 (ENSFHEG00000000949) #20	esr1 (ENSFHEG00000000933) #22	SYNE1 (ENSFHEG00000023274) #23	ENSFHEG00000023281	ENSFHEG00000023287 #23	myct1a (ENSFHEG00000023295) #26	serac1 (ENSFHEG00000023298)	gtf2h5 (ENSFHEG00000023300)	ENSFHEG00000023302	DYNLT1 (ENSFHEG00000023303)	tmem181 (ENSFHEG00000023306)	tulp4a (ENSFHEG00000023310)	mrps10 (ENSFHEG00000023314)	si:ch211-51e12.7 (ENSFHEG00000023316)	msgn1 (ENSFHEG00000023318)	ENSFHEG00000023319	ENSFHEG00000023320
Poeciliinae	ANCESTRAL SPECIES	15	ENSGT00390000014904	ENSGT00940000162477.c	ENSGT01030000234595.A.b.a.b	ENSGT00950000183204.b.b.a.d	ENSGT00950000183204.b.b.a.c	ENSGT00940000156796.c.b.d.a	ENSGT00940000156796.c.b.c	ENSGT00390000010101	ENSGT00940000153467.a.a	ENSGT01050000244948.c.b.a.b	ENSGT01050000244948.c.b.a.a.a	ENSGT00940000157477 #16	ENSGT00730000111244.a.b #17	ENSGT00940000158401 #18	ENSGT00530000064023 #20	ENSGT00940000158133 #22	ENSGT00940000154481.a.b.hb.b #23	ENSGT00940000174968	ENSGT01030000234944.A	ENSGT00940000176900.b	ENSGT00940000154481.a.b.hb.a #23	ENSGT00390000011642.e #26	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000154531	ENSGT00390000007183	ENSGT00940000155913.d	ENSGT00390000009045	ENSGT01030000234809	ENSGT00530000063712.a.b	ENSGT00940000159266
Poecilia	ANCESTRAL SPECIES	9	ENSGT00390000014904	ENSGT00940000162477.c	ENSGT01030000234595.A.b.a.b	ENSGT00950000183204.b.b.a.d	ENSGT00950000183204.b.b.a.c	ENSGT00940000156796.c.b.d.a	ENSGT00940000156796.c.b.c	ENSGT00390000010101	ENSGT00940000153467.a.a	ENSGT01050000244948.c.b.a.b	ENSGT01050000244948.c.b.a.a.a	ENSGT00940000157477 #16	ENSGT00730000111244.a.b #17	ENSGT00940000158401 #18	ENSGT00530000064023 #20	ENSGT00940000158133 #22	ENSGT00940000154481.a.b.hb.b #23	ENSGT00390000011642.e #26	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000154531	ENSGT00390000007183	ENSGT00940000155913.d	ENSGT00390000009045	ENSGT01030000234809	ENSGT00530000063712.a.b	ENSGT00940000159266	ENSGT00940000159634	ENSGT00530000063929.a.b	ENSGT00530000063695.b	ENSGT00950000183168.B.b
NAME_6	ANCESTRAL SPECIES	2	ENSGT00390000014904	ENSGT00940000162477.c	ENSGT01030000234595.A.b.a.b	ENSGT00950000183204.b.b.a.d	ENSGT00950000183204.b.b.a.c	ENSGT00940000156796.c.b.d.a	ENSGT00940000156796.c.b.c	ENSGT00390000010101	ENSGT00940000153467.a.a	ENSGT01050000244948.c.b.a.b	ENSGT01050000244948.c.b.a.a.a	ENSGT00940000157477 #16	ENSGT00730000111244.a.b #17	ENSGT00940000158401 #18	ENSGT00530000064023 #20	ENSGT00940000158133 #22	ENSGT00940000154481.a.b.hb.b #23	ENSGT00390000011642.e #26	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000154531	ENSGT00390000007183	ENSGT00940000155913.d	ENSGT00390000009045	ENSGT01030000234809	ENSGT00530000063712.a.b	ENSGT00940000159266	ENSGT00940000159634	ENSGT00530000063929.a.b	ENSGT00530000063695.b	ENSGT00950000183168.B.b
Sailfin molly	MODERN SPECIES	201										ENSPLAG00000022127	stx11b.2 (ENSPLAG00000022141)	mthfd1l (ENSPLAG00000022159) #16	akap12b (ENSPLAG00000022168) #17	zbtb2b (ENSPLAG00000022175) #18	armt1 (ENSPLAG00000022185) #20	esr1 (ENSPLAG00000022270) #22	SYNE1 (ENSPLAG00000000479) #23	myct1a (ENSPLAG00000022692) #26	serac1 (ENSPLAG00000022774)	gtf2h5 (ENSPLAG00000022796)	DYNLT1 (ENSPLAG00000022832)	tmem181 (ENSPLAG00000022884)	tulp4a (ENSPLAG00000022995)	mrps10 (ENSPLAG00000023045)	si:ch211-51e12.7 (ENSPLAG00000023066)	msgn1 (ENSPLAG00000023083)	ENSPLAG00000023090	ppil6 (ENSPLAG00000023156)	cd164 (ENSPLAG00000023162)	cep57l1 (ENSPLAG00000023169)	sesn1 (ENSPLAG00000023206)
Amazon molly	MODERN SPECIES	253	ADGB (ENSPFOG00000019605)	rab32a (ENSPFOG00000024454)	GRM1 (ENSPFOG00000019604)	ENSPFOG00000021853	fbxo30b (ENSPFOG00000019603)	ENSPFOG00000019602	ENSPFOG00000019601	EPM2A (ENSPFOG00000019600)	UTRN (ENSPFOG00000019599)	STX11 (ENSPFOG00000023087)	stx11b.2 (ENSPFOG00000020616)	mthfd1l (ENSPFOG00000019598) #16	akap12b (ENSPFOG00000019597) #17	zbtb2b (ENSPFOG00000019596) #18	armt1 (ENSPFOG00000024726) #20	esr1 (ENSPFOG00000019595) #22	ENSPFOG00000019557 #23	myct1a (ENSPFOG00000019555) #26	serac1 (ENSPFOG00000019552)	gtf2h5 (ENSPFOG00000019551)	DYNLT1 (ENSPFOG00000019550)	tmem181 (ENSPFOG00000019549)	tulp4a (ENSPFOG00000019548)	mrps10 (ENSPFOG00000019547)	si:ch211-51e12.7 (ENSPFOG00000019546)	msgn1 (ENSPFOG00000020615)	GEN1 (ENSPFOG00000019545)	ppil6 (ENSPFOG00000019543)	cd164 (ENSPFOG00000019542)	cep57l1 (ENSPFOG00000019541)	sesn1 (ENSPFOG00000019540)
Guppy	MODERN SPECIES	452	fbxo30b (ENSPREG00000002765)	ENSPREG00000002777	ENSPREG00000002882	ENSPREG00000002928	ENSPREG00000003112	EPM2A (ENSPREG00000003354)	ENSPREG00000003437	ENSPREG00000003820	ENSPREG00000003920	STX11 (ENSPREG00000003955)	stx11b.2 (ENSPREG00000003978)	mthfd1l (ENSPREG00000004002) #16	akap12b (ENSPREG00000004048) #17	zbtb2b (ENSPREG00000004055) #18	armt1 (ENSPREG00000004071) #20	esr1 (ENSPREG00000004110) #22	ENSPREG00000004212 #23	ENSPREG00000004260 #23	ENSPREG00000004284	ENSPREG00000004301	ENSPREG00000004325 #23	myct1a (ENSPREG00000004420) #26	serac1 (ENSPREG00000004433)	gtf2h5 (ENSPREG00000004465)	DYNLT1 (ENSPREG00000004502)	tmem181 (ENSPREG00000004547)	tulp4a (ENSPREG00000004599)	mrps10 (ENSPREG00000004713)	si:ch211-51e12.7 (ENSPREG00000004749)	msgn1 (ENSPREG00000004757)	ENSPREG00000004765
Platyfish	MODERN SPECIES	6	rab32a (ENSXMAG00000002977)	GRM1 (ENSXMAG00000002979)	ENSXMAG00000021923	fbxo30b (ENSXMAG00000026610)	ENSXMAG00000002992	ENSXMAG00000027877	EPM2A (ENSXMAG00000003006)	ENSXMAG00000024054	ENSXMAG00000003011	ENSXMAG00000024713	stx11b.2 (ENSXMAG00000020369)	mthfd1l (ENSXMAG00000027669) #16	akap12b (ENSXMAG00000024248) #17	zbtb2b (ENSXMAG00000025504) #18	armt1 (ENSXMAG00000003081) #20	esr1 (ENSXMAG00000003084) #22	ENSXMAG00000003104 #23	ENSXMAG00000027684	ENSXMAG00000024848	ENSXMAG00000028229	ENSXMAG00000024999 #23	myct1a (ENSXMAG00000003189) #26	serac1 (ENSXMAG00000003190)	gtf2h5 (ENSXMAG00000003202)	DYNLT1 (ENSXMAG00000003205)	tmem181 (ENSXMAG00000003212)	tulp4a (ENSXMAG00000003229)	mrps10 (ENSXMAG00000003237)	si:ch211-51e12.7 (ENSXMAG00000028878)	ENSXMAG00000024566	ppil6 (ENSXMAG00000003243)
Oryzias	ANCESTRAL SPECIES	19	ENSGT00510000048701.a	ENSGT00950000182906.b.a.i.b	ENSGT00390000014904	ENSGT00940000162477.c	ENSGT01030000234595.A.b.a.b	ENSGT00950000183204.b.b.a	ENSGT00940000156796.c.b	ENSGT00390000010101	ENSGT00940000153467.a.a	ENSGT01050000244948.c.b.a.b	ENSGT01050000244948.c.b.a.a.a	ENSGT00940000157477 #16	ENSGT00730000111244.a.b #17	ENSGT00940000158401 #18	ENSGT00530000064023 #20	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642.e #26	ENSGT00390000003560	ENSGT00390000004028	ENSGT00390000007183	ENSGT00940000155913.d	ENSGT00390000009045	ENSGT00530000063712.a.b	ENSGT00940000159266	ENSGT00940000159634	ENSGT00530000063929.a.b	ENSGT00530000063695.b	ENSGT00390000016811.h	ENSGT00940000156874	ENSGT00940000166832
Oryzias_a	ANCESTRAL SPECIES	13	ENSGT00510000048701.a	ENSGT00950000182906.b.a.i.b	ENSGT00390000014904	ENSGT00940000162477.c	ENSGT01030000234595.A.b.a.b	ENSGT00950000183204.b.b.a	ENSGT00940000156796.c.b	ENSGT00390000010101	ENSGT00940000153467.a.a	ENSGT01050000244948.c.b.a.b	ENSGT01050000244948.c.b.a.a.a	ENSGT00940000157477 #16	ENSGT00730000111244.a.b #17	ENSGT00940000158401 #18	ENSGT00530000064023 #20	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642.e #26	ENSGT00390000003560	ENSGT00390000004028	ENSGT00390000007183	ENSGT00940000155913.d	ENSGT00390000009045	ENSGT00530000063712.a.b	ENSGT00940000159266	ENSGT00940000159634	ENSGT00530000063929.a.b	ENSGT00530000063695.b	ENSGT00390000016811.h	ENSGT00940000156874	ENSGT00940000166832
Chinese medaka	MODERN SPECIES	1302										STX11 (ENSOSIG00000023654)	stx11b.2 (ENSOSIG00000023655)	mthfd1l (ENSOSIG00000023761) #16	akap12b (ENSOSIG00000023845) #17	zbtb2b (ENSOSIG00000023846) #18	armt1 (ENSOSIG00000023848) #20	esr1 (ENSOSIG00000023858) #22	myct1a (ENSOSIG00000023899) #26	serac1 (ENSOSIG00000023923)	gtf2h5 (ENSOSIG00000023925)	tulp4a (ENSOSIG00000023929)	mrps10 (ENSOSIG00000011222)	msgn1 (ENSOSIG00000011224)	ENSOSIG00000011228	ppil6 (ENSOSIG00000011248)	cep57l1 (ENSOSIG00000011256)	ENSOSIG00000011261	PTPN14 (ENSOSIG00000011265)	smyd2b (ENSOSIG00000011282)	prox1a (ENSOSIG00000011334)	rps6kc1 (ENSOSIG00000011354)	ENSOSIG00000011364
Japanese Medaka HdrR	MODERN SPECIES	16	ENSORLG00000027475	ENSORLG00000014153	rab32a (ENSORLG00000014163)	GRM1 (ENSORLG00000014192)	ENSORLG00000014214	ENSORLG00000014250	EPM2A (ENSORLG00000014264)	ENSORLG00000014338	ENSORLG00000028152	STX11 (ENSORLG00000014345)	stx11b.2 (ENSORLG00000029842)	mthfd1l (ENSORLG00000014449) #16	akap12b (ENSORLG00000027717) #17	zbtb2b (ENSORLG00000014474) #18	armt1 (ENSORLG00000014496) #20	esr1 (ENSORLG00000014514) #22	ENSORLG00000024631 #23	ENSORLG00000028741 #23	ENSORLG00000023520	ENSORLG00000027570	ENSORLG00000028886 #23	myct1a (ENSORLG00000027514) #26	serac1 (ENSORLG00000014762)	gtf2h5 (ENSORLG00000030407)	tmem181 (ENSORLG00000014790)	tulp4a (ENSORLG00000014814)	mrps10 (ENSORLG00000014824)	msgn1 (ENSORLG00000014828)	ENSORLG00000024497	ppil6 (ENSORLG00000014836)	ENSORLG00000026587
Oryzias_b	ANCESTRAL SPECIES	17	ENSGT00510000048701.a	ENSGT00950000182906.b.a.i.b	ENSGT00390000014904	ENSGT00940000162477.c	ENSGT01030000234595.A.b.a.b	ENSGT00950000183204.b.b.a	ENSGT00940000156796.c.b	ENSGT00390000010101	ENSGT00940000153467.a.a	ENSGT01050000244948.c.b.a.b	ENSGT01050000244948.c.b.a.a.a	ENSGT00940000157477 #16	ENSGT00730000111244.a.b #17	ENSGT00940000158401 #18	ENSGT00530000064023 #20	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642.e #26	ENSGT00390000003560	ENSGT00390000004028	ENSGT00390000007183	ENSGT00940000155913.d	ENSGT00390000009045	ENSGT01030000234809	ENSGT00530000063712.a.b	ENSGT00940000159266	ENSGT00940000159634	ENSGT00530000063929.a.b	ENSGT00530000063695.b	ENSGT00390000016811.h	ENSGT00940000156874
Indian medaka	MODERN SPECIES	22	stxbp5a (ENSOMEG00000009194)	ENSOMEG00000009275	rab32a (ENSOMEG00000009293)	GRM1 (ENSOMEG00000009316)	fbxo30b (ENSOMEG00000009331)	ENSOMEG00000009663	EPM2A (ENSOMEG00000009763)	ENSOMEG00000000239	ENSOMEG00000009848	STX11 (ENSOMEG00000009861)	stx11b.2 (ENSOMEG00000009870)	mthfd1l (ENSOMEG00000009909) #16	akap12b (ENSOMEG00000009926) #17	zbtb2b (ENSOMEG00000009937) #18	armt1 (ENSOMEG00000009948) #20	esr1 (ENSOMEG00000009991) #22	ENSOMEG00000000242 #23	ENSOMEG00000010036 #23	ENSOMEG00000010057 #23	ENSOMEG00000010113	ENSOMEG00000010130	ENSOMEG00000010151 #23	myct1a (ENSOMEG00000010178) #26	serac1 (ENSOMEG00000010191)	gtf2h5 (ENSOMEG00000010204)	tmem181 (ENSOMEG00000010307)	tulp4a (ENSOMEG00000010431)	mrps10 (ENSOMEG00000010468)	si:ch211-51e12.7 (ENSOMEG00000010489)	ENSOMEG00000010515	ppil6 (ENSOMEG00000000253)
Javanese ricefish	MODERN SPECIES	16	usta (ENSOJAG00000018918)	sash1a (ENSOJAG00000018949)	stxbp5a (ENSOJAG00000019190)	ENSOJAG00000019617	ENSOJAG00000019638	rab32a (ENSOJAG00000019668)	GRM1 (ENSOJAG00000019678)	fbxo30b (ENSOJAG00000019698)	EPM2A (ENSOJAG00000019807)	STX11 (ENSOJAG00000020564)	stx11b.2 (ENSOJAG00000020582)	mthfd1l (ENSOJAG00000020662) #16	akap12b (ENSOJAG00000021498) #17	zbtb2b (ENSOJAG00000021508) #18	armt1 (ENSOJAG00000021512) #20	esr1 (ENSOJAG00000021522) #22	myct1a (ENSOJAG00000022970) #26	serac1 (ENSOJAG00000022976)	gtf2h5 (ENSOJAG00000023015)	tmem181 (ENSOJAG00000023025)	tulp4a (ENSOJAG00000023032)	mrps10 (ENSOJAG00000023038)	msgn1 (ENSOJAG00000023041)	ENSOJAG00000023047	ppil6 (ENSOJAG00000023065)	ENSOJAG00000023078	cep57l1 (ENSOJAG00000023083)	ENSOJAG00000023088	PTPN14 (ENSOJAG00000023097)	smyd2b (ENSOJAG00000023140)	prox1a (ENSOJAG00000023266)
Ovalentaria_B	ANCESTRAL SPECIES	17	ENSGT00950000182906.b.a.i.b	ENSGT00390000014904	ENSGT00940000162477.c	ENSGT01030000234595.A.b.a.b	ENSGT00950000183204.b.b.a	ENSGT00940000156796.c.b	ENSGT00940000166257	ENSGT00390000010101	ENSGT00940000153467.a.a	ENSGT01050000244948.c.b.a.b	ENSGT01050000244948.c.b.a.a.a	ENSGT00940000157477 #16	ENSGT00730000111244.a.b #17	ENSGT00940000158401 #18	ENSGT00530000064023 #20	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642.e #26	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000154531	ENSGT00390000007183	ENSGT00940000155913.d	ENSGT00390000009045	ENSGT01030000234809	ENSGT00530000063712.a.b	ENSGT00940000159266	ENSGT00940000159634	ENSGT00530000063929.a.b	ENSGT00530000063695.b	ENSGT00950000183168.B.b
Pomacentridae	ANCESTRAL SPECIES	118								ENSGT00390000010101	ENSGT00940000153467.a.a	ENSGT01050000244948.c.b.a.b	ENSGT01050000244948.c.b.a.a.a	ENSGT00940000157477 #16	ENSGT00730000111244.a.b #17	ENSGT00940000158401 #18	ENSGT00530000064023 #20	ENSGT00940000158133 #22	ENSGT00940000174968	ENSGT01030000234944.A	ENSGT00940000176900.b	ENSGT00940000154481.a.b #23	ENSGT00390000011642.e #26	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000154531	ENSGT00390000007183	ENSGT00940000155913.d	ENSGT00390000009045	ENSGT01030000234809	ENSGT00530000063712.a.b	ENSGT00940000159266	ENSGT00940000159634
Pomacentridae_A	ANCESTRAL SPECIES	120								ENSGT00390000010101	ENSGT00940000153467.a.a	ENSGT01050000244948.c.b.a.b	ENSGT01050000244948.c.b.a.a.a	ENSGT00940000157477 #16	ENSGT00730000111244.a.b #17	ENSGT00940000158401 #18	ENSGT00530000064023 #20	ENSGT00940000158133 #22	ENSGT00940000174968	ENSGT01030000234944.A	ENSGT00940000176900.b	ENSGT00940000154481.a.b #23	ENSGT00390000011642.e #26	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000154531	ENSGT00390000007183	ENSGT00940000155913.d	ENSGT00390000009045	ENSGT01030000234809	ENSGT00530000063712.a.b	ENSGT00940000159266	ENSGT00940000159634
Amphiprion	ANCESTRAL SPECIES	58	ENSGT00390000010349.a.a	ENSGT00930000151053	ENSGT00940000159462.a.b	ENSGT00510000047895	ENSGT00940000155490.a.c.b	ENSGT00940000155490.a.c.a	ENSGT00700000106116.a.a	ENSGT00390000010101	ENSGT00940000153467.a.a	ENSGT01050000244948.c.b.a.b	ENSGT01050000244948.c.b.a.a.a	ENSGT00940000157477 #16	ENSGT00730000111244.a.b #17	ENSGT00940000158401 #18	ENSGT00530000064023 #20	ENSGT00940000158133 #22	ENSGT00940000176900.b	ENSGT00940000154481.a.b #23	ENSGT00390000011642.e #26	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000154531	ENSGT00390000007183	ENSGT00940000155913.d	ENSGT00390000009045	ENSGT01030000234809	ENSGT00530000063712.a.b	ENSGT00940000159266	ENSGT00940000159634	ENSGT00530000063929.a.b	ENSGT00530000063695.b
Clown anemonefish	MODERN SPECIES	174														ENSAOCG00000015463 #18	zbtb2b (ENSAOCG00000015452) #18	esr1 (ENSAOCG00000015411) #22
Orange clownfish	MODERN SPECIES	2	xrcc3 (ENSAPEG00000017242)	ENSAPEG00000017231	PPP4R4 (ENSAPEG00000017202)	ENSAPEG00000017107	ENSAPEG00000017012	C14orf132 (ENSAPEG00000017002)	EPM2A (ENSAPEG00000016979)	ENSAPEG00000016926	ENSAPEG00000016760	STX11 (ENSAPEG00000016746)	stx11b.2 (ENSAPEG00000016732)	mthfd1l (ENSAPEG00000016494) #16	akap12b (ENSAPEG00000016463) #17	zbtb2b (ENSAPEG00000016458) #18	armt1 (ENSAPEG00000016451) #20	esr1 (ENSAPEG00000016404) #22	SYNE1 (ENSAPEG00000016174) #23	ENSAPEG00000016154	ENSAPEG00000016104 #23	myct1a (ENSAPEG00000016095) #26	serac1 (ENSAPEG00000016003)	gtf2h5 (ENSAPEG00000015981)	DYNLT1 (ENSAPEG00000015959)	tmem181 (ENSAPEG00000015920)	tulp4a (ENSAPEG00000015839)	mrps10 (ENSAPEG00000015826)	si:ch211-51e12.7 (ENSAPEG00000015817)	msgn1 (ENSAPEG00000015802)	ENSAPEG00000015777	ENSAPEG00000015757	ppil6 (ENSAPEG00000015715)
Spiny chromis	MODERN SPECIES	319						ENSAPOG00000008166	ENSAPOG00000008397	ENSAPOG00000008439	STX11 (ENSAPOG00000008452)	ENSAPOG00000008468	stx11b.2 (ENSAPOG00000008483)	mthfd1l (ENSAPOG00000008513) #16	akap12b (ENSAPOG00000008535) #17	zbtb2b (ENSAPOG00000008546) #18	armt1 (ENSAPOG00000008559) #20	esr1 (ENSAPOG00000008603) #22	ENSAPOG00000008794 #23	ENSAPOG00000008835	ENSAPOG00000008854	ENSAPOG00000008868	ENSAPOG00000009043 #23
Bicolor damselfish	MODERN SPECIES	365								EPM2A (ENSSPAG00000004934)	UTRN (ENSSPAG00000004442)	ENSSPAG00000004378	stx11b.2 (ENSSPAG00000004367)	mthfd1l (ENSSPAG00000004293) #16	akap12b (ENSSPAG00000004269) #17	zbtb2b (ENSSPAG00000004259) #18	armt1 (ENSSPAG00000004247) #20	esr1 (ENSSPAG00000004227) #22	SYNE1 (ENSSPAG00000004052) #23	ENSSPAG00000004022	ENSSPAG00000003860 #23	myct1a (ENSSPAG00000003828) #26	serac1 (ENSSPAG00000003744)	gtf2h5 (ENSSPAG00000003724)	DYNLT1 (ENSSPAG00000003692)	tmem181 (ENSSPAG00000003649)	tulp4a (ENSSPAG00000003569)	mrps10 (ENSSPAG00000003540)	si:ch211-51e12.7 (ENSSPAG00000003525)	msgn1 (ENSSPAG00000003515)	ENSSPAG00000003484	ENSSPAG00000003467	ppil6 (ENSSPAG00000003439)
Cichlidae	ANCESTRAL SPECIES	12	ENSGT00390000014904	ENSGT00940000162477.c	ENSGT01030000234595.A.b.a.b	ENSGT00950000183204.b.b.a	ENSGT00940000156796.c.b	ENSGT00940000166257	ENSGT00390000010101	ENSGT00940000153467.a.a	ENSGT01050000244948.c.b.a.b	ENSGT01050000244948.c.b.a.a.a.g	ENSGT01050000244948.c.b.a.a.a.h	ENSGT00940000157477 #16	ENSGT00730000111244.a.b #17	ENSGT00940000158401 #18	ENSGT00530000064023 #20	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642.e #26	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000154531	ENSGT00390000007183	ENSGT00940000155913.d	ENSGT00390000009045	ENSGT01030000234809	ENSGT00530000063712.a.b	ENSGT00940000159266	ENSGT00940000159634	ENSGT00530000063929.a.b	ENSGT00530000063695.b	ENSGT00950000183168.B.b
Pseudocrenilabrinae	ANCESTRAL SPECIES	6	ENSGT00950000182906.b.a.i.b	ENSGT00390000014904	ENSGT00940000162477.c	ENSGT01030000234595.A.b.a.b	ENSGT00950000183204.b.b.a	ENSGT00940000156796.c.b	ENSGT00390000010101	ENSGT00940000153467.a.a	ENSGT01050000244948.c.b.a.b	ENSGT01050000244948.c.b.a.a.a.g	ENSGT01050000244948.c.b.a.a.a.h	ENSGT00940000157477 #16	ENSGT00730000111244.a.b #17	ENSGT00940000158401 #18	ENSGT00530000064023 #20	ENSGT00940000158133 #22	ENSGT00940000154481.a.b.ab #23	ENSGT00940000174968	ENSGT01030000234944.A	ENSGT00940000176900.b	ENSGT00940000154481.a.b.`b #23	ENSGT00390000011642.e #26	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000154531	ENSGT00390000007183	ENSGT00940000155913.d	ENSGT00390000009045	ENSGT01030000234809	ENSGT00530000063712.a.b	ENSGT00940000159266
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	3	ENSGT00390000014904	ENSGT00940000162477.c	ENSGT01030000234595.A.b.a.b	ENSGT00950000183204.b.b.a	ENSGT00940000166257	ENSGT00940000156796.c.b	ENSGT00390000010101	ENSGT00940000153467.a.a	ENSGT01050000244948.c.b.a.b	ENSGT01050000244948.c.b.a.a.a.g	ENSGT01050000244948.c.b.a.a.a.h	ENSGT00940000157477 #16	ENSGT00730000111244.a.b #17	ENSGT00940000158401 #18	ENSGT00530000064023 #20	ENSGT00940000158133 #22	ENSGT00940000154481.a.b.ab #23	ENSGT00940000174968	ENSGT01030000234944.A	ENSGT00940000176900.b	ENSGT00940000154481.a.b.`b #23	ENSGT00390000011642.e #26	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000154531	ENSGT00390000007183	ENSGT00940000155913.d	ENSGT00390000009045	ENSGT01030000234809	ENSGT00530000063712.a.b	ENSGT00940000159266
Haplochromini	ANCESTRAL SPECIES	13	ENSGT00950000182906.b.a.i.b	ENSGT00390000014904	ENSGT00940000162477.c	ENSGT01030000234595.A.b.a.b	ENSGT00950000183204.b.b.a	ENSGT00940000166257	ENSGT00390000010101	ENSGT00940000153467.a.a	ENSGT01050000244948.c.b.a.b	ENSGT01050000244948.c.b.a.a.a.g	ENSGT01050000244948.c.b.a.a.a.h	ENSGT00940000157477 #16	ENSGT00730000111244.a.b #17	ENSGT00940000158401 #18	ENSGT00530000064023 #20	ENSGT00940000158133 #22	ENSGT00940000154481.a.b.ab #23	ENSGT00940000174968	ENSGT01030000234944.A	ENSGT00940000176900.b	ENSGT00940000154481.a.b.`b #23	ENSGT00390000011642.e #26	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000154531	ENSGT00390000007183	ENSGT00940000155913.d	ENSGT00390000009045	ENSGT01030000234809	ENSGT00530000063712.a.b	ENSGT00940000159266
Haplochromini_A	ANCESTRAL SPECIES	11	ENSGT00950000182906.b.a.i.b	ENSGT00390000014904	ENSGT00940000162477.c	ENSGT01030000234595.A.b.a.b	ENSGT00950000183204.b.b.a	ENSGT00940000166257	ENSGT00390000010101	ENSGT00940000153467.a.a	ENSGT01050000244948.c.b.a.b	ENSGT01050000244948.c.b.a.a.a.g	ENSGT01050000244948.c.b.a.a.a.h	ENSGT00940000157477 #16	ENSGT00730000111244.a.b #17	ENSGT00940000158401 #18	ENSGT00530000064023 #20	ENSGT00940000158133 #22	ENSGT00940000154481.a.b.ab #23	ENSGT00940000174968	ENSGT01030000234944.A	ENSGT00940000176900.b	ENSGT00940000154481.a.b.`b #23	ENSGT00390000011642.e #26	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000154531	ENSGT00390000007183	ENSGT00940000155913.d	ENSGT00390000009045	ENSGT01030000234809	ENSGT00530000063712.a.b	ENSGT00940000159266
P. nyererei	MODERN SPECIES	353	stxbp5a (ENSPNYG00000010728)	ENSPNYG00000010779	rab32a (ENSPNYG00000010795)	GRM1 (ENSPNYG00000010807)	fbxo30b (ENSPNYG00000010834)	EPM2A (ENSPNYG00000010842)	ENSPNYG00000010938	ENSPNYG00000011273	STX11 (ENSPNYG00000011337)	STX11 (ENSPNYG00000011348)	STX11 (ENSPNYG00000011359)	mthfd1l (ENSPNYG00000011423) #16	akap12b (ENSPNYG00000011556) #17	zbtb2b (ENSPNYG00000011592) #18	armt1 (ENSPNYG00000011607) #20	esr1 (ENSPNYG00000011625) #22	ENSPNYG00000011678 #23	ENSPNYG00000011772	ENSPNYG00000011798	ENSPNYG00000011808	ENSPNYG00000011870 #23	myct1a (ENSPNYG00000012092) #26	serac1 (ENSPNYG00000012107)	gtf2h5 (ENSPNYG00000012156)
Haplochromini_B	ANCESTRAL SPECIES	22	ENSGT00950000182906.b.a.i.b	ENSGT00390000014904	ENSGT00940000162477.c	ENSGT01030000234595.A.b.a.b	ENSGT00950000183204.b.b.a	ENSGT00940000166257	ENSGT00390000010101	ENSGT00940000153467.a.a	ENSGT00970000193911	ENSGT01050000244948.c.b.a.a.a.g	ENSGT01050000244948.c.b.a.a.a.h	ENSGT00940000157477 #16	ENSGT00730000111244.a.b #17	ENSGT00940000158401 #18	ENSGT00530000064023 #20	ENSGT00940000158133 #22	ENSGT00940000154481.a.b.ab #23	ENSGT00940000174968	ENSGT01030000234944.A	ENSGT00940000176900.b	ENSGT00940000154481.a.b.`b #23	ENSGT00390000011642.e #26	ENSGT00390000003560.g	ENSGT00390000004028
Eastern happy	MODERN SPECIES	6	stxbp5a (ENSACLG00000017384)	ADGB (ENSACLG00000017918)	rab32a (ENSACLG00000018064)	GRM1 (ENSACLG00000018085)	fbxo30b (ENSACLG00000018132)	ENSACLG00000018144	EPM2A (ENSACLG00000018160)	UTRN (ENSACLG00000018227)	ENSACLG00000018636	STX11 (ENSACLG00000018674)	STX11 (ENSACLG00000018690)	mthfd1l (ENSACLG00000018786) #16	akap12b (ENSACLG00000019192) #17	zbtb2b (ENSACLG00000019230) #18	armt1 (ENSACLG00000019241) #20	esr1 (ENSACLG00000019268) #22	ENSACLG00000019314 #23	ENSACLG00000019451	ENSACLG00000019476	ENSACLG00000019491	ENSACLG00000019517 #23	myct1a (ENSACLG00000019634) #26	serac1 (ENSACLG00000019653)	gtf2h5 (ENSACLG00000019731)	ENSACLG00000019767	ENSACLG00000019773	ENSACLG00000019787	ENSACLG00000019815	ENSACLG00000019831	ENSACLG00000019889	ENSACLG00000019919
Zebra mbuna	MODERN SPECIES	1097	stxbp5a (ENSMZEG00005017550)	ENSMZEG00005017559	rab32a (ENSMZEG00005017566)	GRM1 (ENSMZEG00005017567)	fbxo30b (ENSMZEG00005017574)	ENSMZEG00005017578	EPM2A (ENSMZEG00005017585)	UTRN (ENSMZEG00005017614)	ENSMZEG00005017662	STX11 (ENSMZEG00005017670)	STX11 (ENSMZEG00005017672)	mthfd1l (ENSMZEG00005017825) #16	akap12b (ENSMZEG00005017831) #17	zbtb2b (ENSMZEG00005017843) #18	armt1 (ENSMZEG00005017850) #20	esr1 (ENSMZEG00005017853) #22	ENSMZEG00005017866 #23	ENSMZEG00005017877	ENSMZEG00005017881	ENSMZEG00005017888	ENSMZEG00005017903 #23	myct1a (ENSMZEG00005017915) #26	serac1 (ENSMZEG00005017920)	gtf2h5 (ENSMZEG00005017929)	ENSMZEG00005017951	ENSMZEG00005018024	ENSMZEG00005018028	ENSMZEG00005018032	DYNLT1 (ENSMZEG00005018038)	tmem181 (ENSMZEG00005018041)	tulp4a (ENSMZEG00005018048)
Burton s mouthbrooder	MODERN SPECIES	276	stxbp5a (ENSHBUG00000001000)	ADGB (ENSHBUG00000009091)	rab32a (ENSHBUG00000009070)	GRM1 (ENSHBUG00000009056)	fbxo30b (ENSHBUG00000009004)	EPM2A (ENSHBUG00000008998)	UTRN (ENSHBUG00000008972)	ENSHBUG00000008886	STX11 (ENSHBUG00000008847)	STX11 (ENSHBUG00000008836)	STX11 (ENSHBUG00000008829)	mthfd1l (ENSHBUG00000008807) #16	akap12b (ENSHBUG00000008496) #17	zbtb2b (ENSHBUG00000008481) #18	armt1 (ENSHBUG00000008474) #20	esr1 (ENSHBUG00000008433) #22	ENSHBUG00000008315 #23	ENSHBUG00000008161	ENSHBUG00000008126	ENSHBUG00000008083	ENSHBUG00000008066 #23	myct1a (ENSHBUG00000007969) #26	serac1 (ENSHBUG00000007960)	gtf2h5 (ENSHBUG00000007907)
Lyretail cichlid	MODERN SPECIES	314						ENSNBRG00000017726	EPM2A (ENSNBRG00000017786)	ENSNBRG00000017874	ENSNBRG00000018130	STX11 (ENSNBRG00000018154)	stx11b.1 (ENSNBRG00000018175)	mthfd1l (ENSNBRG00000018231) #16	akap12b (ENSNBRG00000018357) #17	zbtb2b (ENSNBRG00000018368) #18	armt1 (ENSNBRG00000018380) #20	esr1 (ENSNBRG00000018394) #22	ENSNBRG00000018439 #23	ENSNBRG00000018512	ENSNBRG00000018534	ENSNBRG00000018542	ENSNBRG00000018583 #23	ENSNBRG00000018769 #23	myct1a (ENSNBRG00000018802) #26	serac1 (ENSNBRG00000018822)	gtf2h5 (ENSNBRG00000018868)	DYNLT1 (ENSNBRG00000018906)	tmem181 (ENSNBRG00000018942)	tulp4a (ENSNBRG00000019009)	mrps10 (ENSNBRG00000019093)	ENSNBRG00000019116	msgn1 (ENSNBRG00000019141)
Nile tilapia	MODERN SPECIES	6	usta (ENSONIG00000013424)	sash1a (ENSONIG00000013418)	stxbp5a (ENSONIG00000013412)	ENSONIG00000027727	rab32 (ENSONIG00000013408)	GRM1 (ENSONIG00000013404)	fbxo30b (ENSONIG00000013403)	ENSONIG00000013402	epm2a (ENSONIG00000032862)	UTRN (ENSONIG00000013377)	stx11b.1 (ENSONIG00000020894)	mthfd1l (ENSONIG00000013373) #16	akap12b (ENSONIG00000013372) #17	zbtb2b (ENSONIG00000038083) #18	armt1 (ENSONIG00000013368) #20	esr1 (ENSONIG00000013354) #22	SYNE1 (ENSONIG00000013332) #23	myct1a (ENSONIG00000037910) #26	serac1 (ENSONIG00000013328)	gtf2h5 (ENSONIG00000029253)	DYNLT1 (ENSONIG00000013325)	tmem181 (ENSONIG00000013318)	ENSONIG00000014666	SLC48A1 (ENSONIG00000034831)	mrps10 (ENSONIG00000030627)	msgn1 (ENSONIG00000013311)	ENSONIG00000013310	ppil6 (ENSONIG00000013308)	ENSONIG00000035914	cd164 (ENSONIG00000028394)	cep57l1 (ENSONIG00000013303)
Midas cichlid	MODERN SPECIES	271	rab32a (ENSACIG00000006816)	GRM1 (ENSACIG00000006878)	fbxo30b (ENSACIG00000006905)	ENSACIG00000006930	ENSACIG00000007152	EPM2A (ENSACIG00000007282)	ENSACIG00000007310	ENSACIG00000007561	STX11 (ENSACIG00000007588)	STX11 (ENSACIG00000007602)	STX11 (ENSACIG00000007615)	mthfd1l (ENSACIG00000007646) #16	akap12b (ENSACIG00000007766) #17	zbtb2b (ENSACIG00000007772) #18	armt1 (ENSACIG00000007786) #20	esr1 (ENSACIG00000007819) #22	ENSACIG00000007857 #23	ENSACIG00000007966	ENSACIG00000008010	ENSACIG00000008028 #23	myct1a (ENSACIG00000008099) #26	serac1 (ENSACIG00000008115)	gtf2h5 (ENSACIG00000008156)	DYNLT1 (ENSACIG00000008203)	tmem181 (ENSACIG00000008217)	tulp4a (ENSACIG00000008262)	mrps10 (ENSACIG00000008304)	si:ch211-51e12.7 (ENSACIG00000008332)	msgn1 (ENSACIG00000008345)	ENSACIG00000008354	ENSACIG00000008370
Tiger tail seahorse	MODERN SPECIES	450	ENSHCOG00000000411	ENSHCOG00000014684	ppp2r5cb (ENSHCOG00000014671)	HSP90AA1 (ENSHCOG00000014636)	hsp90aa1.1 (ENSHCOG00000014614)	MDGA2 (ENSHCOG00000014586)	ENSHCOG00000014550	ENSHCOG00000014532	mgat2 (ENSHCOG00000014525)	WDR20 (ENSHCOG00000014518)	FKBP3 (ENSHCOG00000014481)	faua (ENSHCOG00000014508)	prpf39 (ENSHCOG00000014454)	zbtb2b (ENSHCOG00000014426) #18	armt1 (ENSHCOG00000014400) #20	esr1 (ENSHCOG00000014381) #22	ENSHCOG00000014373 #23	ENSHCOG00000014343 #23	ENSHCOG00000014325	ENSHCOG00000014316	ENSHCOG00000014305	ENSHCOG00000014287 #23	myct1a (ENSHCOG00000014230) #26	serac1 (ENSHCOG00000014216)	gtf2h5 (ENSHCOG00000014167)	DYNLT1 (ENSHCOG00000014159)	ENSHCOG00000014156	tulp4a (ENSHCOG00000014146)	mrps10 (ENSHCOG00000014114)	msgn1 (ENSHCOG00000014108)	ENSHCOG00000014103
Pinecone sodierfish	MODERN SPECIES	16	sash1a (ENSMMDG00005015596)	SAMD5 (ENSMMDG00005015592)	stxbp5a (ENSMMDG00005015583)	ENSMMDG00005015572	rab32a (ENSMMDG00005015570)	GRM1 (ENSMMDG00005014767)	fbxo30b (ENSMMDG00005014749)	EPM2A (ENSMMDG00005014746)	UTRN (ENSMMDG00005013388)	STX11 (ENSMMDG00005013337)	stx11b.2 (ENSMMDG00005013330)	mthfd1l (ENSMMDG00005005569) #16	akap12b (ENSMMDG00005005489) #17	zbtb2b (ENSMMDG00005005486) #18	armt1 (ENSMMDG00005005485) #20	esr1 (ENSMMDG00005004992) #22	SYNE1 (ENSMMDG00005004531) #23	myct1a (ENSMMDG00005004474) #26	serac1 (ENSMMDG00005002910)	gtf2h5 (ENSMMDG00005002845)	DYNLT1 (ENSMMDG00005002836)	tmem181 (ENSMMDG00005002818)	tulp4a (ENSMMDG00005002800)	mrps10 (ENSMMDG00005002796)	si:ch211-51e12.7 (ENSMMDG00005002788)	msgn1 (ENSMMDG00005002764)	ENSMMDG00005002750	ppil6 (ENSMMDG00005002718)	cd164 (ENSMMDG00005002696)	cep57l1 (ENSMMDG00005002680)	sesn1 (ENSMMDG00005002663)
Cod	MODERN SPECIES	13	ENSGMOG00000024992	ENSGMOG00000034195	ENSGMOG00000031640	ENSGMOG00000027968	ENSGMOG00000024133	ENSGMOG00000005529	ENSGMOG00000005496	ENSGMOG00000008997	ENSGMOG00000008976	ENSGMOG00000026189	stx11b.1 (ENSGMOG00000034977)	mthfd1l (ENSGMOG00000007486) #16	akap12b (ENSGMOG00000023204) #17	zbtb2b (ENSGMOG00000030464) #18	armt1 (ENSGMOG00000022447) #20	esr1 (ENSGMOG00000014898) #22	ENSGMOG00000036568 #23	myct1a (ENSGMOG00000031525) #26	serac1 (ENSGMOG00000015267)	ENSGMOG00000028299	ENSGMOG00000013202	ENSGMOG00000036692	ENSGMOG00000033243	ENSGMOG00000013003	ENSGMOG00000013023	ENSGMOG00000018629	ENSGMOG00000007087	ENSGMOG00000007103	ENSGMOG00000015219	hsp90aa1.1 (ENSGMOG00000015234)	hsp90aa1.2 (ENSGMOG00000015260)
Protacanthopterygii	ANCESTRAL SPECIES	22	ENSGT00510000048701.a	ENSGT00950000182906.b.a.i.b	ENSGT00390000014904	ENSGT00940000162477.c	ENSGT01030000234595.A.b.a.b	ENSGT00950000183204.b.b.a	ENSGT00940000156796.c.b	ENSGT00390000010101	ENSGT00940000153467.a.a	ENSGT01050000244948.c.b.a.b	ENSGT01050000244948.c.b.a.a.a	ENSGT00940000157477 #16	ENSGT00730000111244.a.b #17	ENSGT00940000158401 #18	ENSGT00530000064023 #20	ENSGT00940000158133 #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642.e #26	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000154531	ENSGT00390000007183	ENSGT00940000155913.d	ENSGT00390000009045	ENSGT01060000249589	ENSGT00530000063712.a.b	ENSGT00940000159266	ENSGT00550000074816.A.a	ENSGT00940000162510	ENSGT01100000263595	ENSGT00390000015191
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	1810																ENSGT00940000158133.e #22	ENSGT00940000165510.c
Salmoninae_a	ANCESTRAL SPECIES	23	ENSGT01060000248564.b.a.a.b.d	ENSGT00950000182962.b.b.g.a	ENSGT00530000063583.b.b	ENSGT00390000002881.fc.a	ENSGT00940000160723.w	ENSGT00530000063408.A.j	ENSGT00940000156778.l.b	ENSGT00510000048701.a.b	ENSGT00950000182906.b.a.i.b.a	ENSGT00390000014904	ENSGT00940000162477.c.e.b	ENSGT01030000234595.A.b.a.b.a	ENSGT00940000153467.a.a.j	ENSGT01050000244948.c.b.a.a.a.i	ENSGT00730000111244.a.b.d #17	ENSGT00940000158133.e #22	ENSGT00940000165510.c	ENSGT00940000154790.a.a.b.f	ENSGT00940000156058.g.b	ENSGT00390000003188.i	ENSGT00530000063651.a.c	ENSGT00390000013931.m.a	ENSGT00390000011877	ENSGT00530000063558.B.k	ENSGT00940000155086.B.f	ENSGT00940000153804.A	ENSGT01100000263524.D.d.e	ENSGT00390000011892.g.a	ENSGT00940000153311.a.b.b.e	ENSGT00390000001660.m	ENSGT00390000005318.b.b.a.i
Salmo	ANCESTRAL SPECIES	26	ENSGT01060000248564.b.a.a.b.d	ENSGT00950000182962.b.b.g.a	ENSGT00530000063583.b.b	ENSGT00390000002881.fc.a	ENSGT00940000160723.w	ENSGT00530000063408.A.j	ENSGT00940000156778.l.b	ENSGT00510000048701.a.b	ENSGT00950000182906.b.a.i.b.a	ENSGT00390000014904	ENSGT00940000162477.c.e.b	ENSGT01030000234595.A.b.a.b.a	ENSGT00940000153467.a.a.j	ENSGT01050000244948.c.b.a.a.a.i	ENSGT00730000111244.a.b.d #17	ENSGT00940000158133.e #22	ENSGT00940000165510.c	ENSGT00940000154790.a.a.b.f	ENSGT00990000210479	ENSGT00390000003188.i	ENSGT00530000063651.a.c	ENSGT00390000013931.m.a	ENSGT00390000011877	ENSGT00530000063558.B.k	ENSGT00940000155086.B.f	ENSGT00940000153804.A	ENSGT01100000263524.D.d.e	ENSGT00390000011892.g.a	ENSGT00940000153311.a.b.b.e	ENSGT00390000001660.m	ENSGT00390000005318.b.b.a.i
Atlantic salmon	MODERN SPECIES	6	ENSSSAG00000086151	ENSSSAG00000082756	METTL24 (ENSSSAG00000103123)	slc22a16 (ENSSSAG00000003207)	usta (ENSSSAG00000054961)	sash1a (ENSSSAG00000105883)	SAMD5 (ENSSSAG00000054946)	ENSSSAG00000104744	stxbp5a (ENSSSAG00000003440)	ADGB (ENSSSAG00000045931)	rab32a (ENSSSAG00000045918)	GRM1 (ENSSSAG00000045907)	ENSSSAG00000040169	ENSSSAG00000009650	ENSSSAG00000040053 #17	ENSSSAG00000039839 #22	ENSSSAG00000039737	ENSSSAG00000039664	ENSSSAG00000039610	ENSSSAG00000112855	ENSSSAG00000074661	ENSSSAG00000121592	wtap (ENSSSAG00000074636)	sod2 (ENSSSAG00000074606)	FNDC1 (ENSSSAG00000074589)	otofa (ENSSSAG00000074129)	ENSSSAG00000074076	ENSSSAG00000074073	mut (ENSSSAG00000073058)	wdcp (ENSSSAG00000073030)	mfsd2b (ENSSSAG00000072986)
River trout	MODERN SPECIES	28	slc22a16 (ENSSTUG00000023388)	usta (ENSSTUG00000023396)	sash1a (ENSSTUG00000023413)	ENSSTUG00000023627	SAMD5 (ENSSTUG00000023631)	SAMD5 (ENSSTUG00000023642)	stxbp5a (ENSSTUG00000023731)	ADGB (ENSSTUG00000025805)	rab32a (ENSSTUG00000025885)	GRM1 (ENSSTUG00000025908)	ENSSTUG00000013571	ENSSTUG00000013735	ENSSTUG00000014829	ENSSTUG00000014834	ENSSTUG00000014838	ENSSTUG00000014847 #22	ENSSTUG00000014895	ENSSTUG00000014919	prox1a (ENSSTUG00000014925)	ENSSTUG00000014946	lin9 (ENSSTUG00000015004)	acbd3 (ENSSTUG00000016082)	wtap (ENSSTUG00000016092)	sod2 (ENSSTUG00000016111)	FNDC1 (ENSSTUG00000016260)	otofa (ENSSTUG00000016416)	drc1 (ENSSTUG00000017081)	opn8a (ENSSTUG00000017153)	mmut (ENSSTUG00000017215)	fkbp1b (ENSSTUG00000017668)	wdcp (ENSSTUG00000017700)
Oncorhynchus	ANCESTRAL SPECIES	25	ENSGT01060000248564.b.a.a.b.d	ENSGT00950000182962.b.b.g.a	ENSGT00530000063583.b.b	ENSGT00390000002881.fc.a	ENSGT00940000160723.w	ENSGT00530000063408.A.j	ENSGT00940000156778.l.b	ENSGT00510000048701.a.b	ENSGT00950000182906.b.a.i.b.a	ENSGT00390000014904	ENSGT00940000162477.c.e.b	ENSGT01030000234595.A.b.a.b.a	ENSGT00940000153467.a.a.j	ENSGT01050000244948.c.b.a.b	ENSGT00730000111244.a.b.d #17	ENSGT00940000158133.e #22	ENSGT00940000165510.c	ENSGT00940000156874.m	ENSGT00940000154790.a.a.b.f	ENSGT00940000156058.g.b	ENSGT00390000003188.i	ENSGT00530000063651.a.c	ENSGT00390000013931.m.a	ENSGT00390000011877	ENSGT00530000063558.B.k	ENSGT00940000155086.B.f	ENSGT00940000153804.A	ENSGT01100000263524.D.d.e	ENSGT00390000011892.g.a	ENSGT00940000153311.a.b.b.e.a.b	ENSGT00390000001660.m
Rainbow trout	MODERN SPECIES	29	ENSOMYG00000077641	stxbp5a (ENSOMYG00000002493)	ENSOMYG00000066189	ENSOMYG00000058899	ENSOMYG00000070827	ENSOMYG00000065928	ENSOMYG00000002151	rab32a (ENSOMYG00000002145)	GRM1 (ENSOMYG00000002055)	ENSOMYG00000062599	ENSOMYG00000001786	ENSOMYG00000061397	ENSOMYG00000001665	ENSOMYG00000001328	ENSOMYG00000001313 #17	ENSOMYG00000025173 #22	ENSOMYG00000025048	ENSOMYG00000025006	ENSOMYG00000024977	ENSOMYG00000024937	ENSOMYG00000024864	ENSOMYG00000059774	ENSOMYG00000024771	wtap (ENSOMYG00000024720)	sod2 (ENSOMYG00000024260)	ENSOMYG00000053153	FNDC1 (ENSOMYG00000023817)	otofa (ENSOMYG00000022197)	ENSOMYG00000021893	opn8a (ENSOMYG00000057946)	mmut (ENSOMYG00000020771)
Oncorhynchus_a	ANCESTRAL SPECIES	17	ENSGT00950000182962.b.b.g.a	ENSGT00530000063583.b.b	ENSGT00390000002881.fc.a	ENSGT00940000160723.w	ENSGT00530000063408.A.j	ENSGT00940000156778.l.b	ENSGT00510000048701.a.a.b.b	ENSGT00510000048701.a.b	ENSGT00950000182906.b.a.i.b.a	ENSGT00390000014904	ENSGT00940000162477.c.e.b	ENSGT01030000234595.A.b.a.b.a	ENSGT00940000153467.a.a.j	ENSGT01050000244948.c.b.a.b	ENSGT00730000111244.a.b.d #17	ENSGT00940000158133.e #22	ENSGT00940000165510.c	ENSGT00940000156874.m	ENSGT00940000154790.a.a.b.f	ENSGT00940000156058.g.b	ENSGT00390000003188.i	ENSGT01000000220371	ENSGT00530000063651.a.c	ENSGT00390000013931.m.a	ENSGT00390000011877	ENSGT00530000063558.B.k	ENSGT00940000155086.B.f	ENSGT00940000153804.A	ENSGT01100000263524.D.d.e	ENSGT00390000011892.g.a	ENSGT00940000153311.a.b.b.e.a.a
Chinook salmon	DUPLICATION
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	29	ENSOTSG00005028616	nppc (ENSOTSG00005028615)	METTL24 (ENSOTSG00005028614)	slc22a16 (ENSOTSG00005028613)	usta (ENSOTSG00005028612)	sash1a (ENSOTSG00005028610)	SAMD5 (ENSOTSG00005028609)	stxbp5a (ENSOTSG00005027904)	ADGB (ENSOTSG00005027899)	rab32a (ENSOTSG00005027898)	GRM1 (ENSOTSG00005027897)	ENSOTSG00005027896	ENSOTSG00005027800	STX11 (ENSOTSG00005027791)	akap12b (ENSOTSG00005027790) #17	esr1 (ENSOTSG00005027786) #22	ENSOTSG00005027784	ENSOTSG00005027783	prox1a (ENSOTSG00005027782)	ENSOTSG00005027781	lin9 (ENSOTSG00005027731)	ENSOTSG00005027696	acbd3 (ENSOTSG00005027690)	wtap (ENSOTSG00005040335)	sod2 (ENSOTSG00005040331)	FNDC1 (ENSOTSG00005040328)	otofa (ENSOTSG00005040324)	drc1 (ENSOTSG00005040317)	opn8a (ENSOTSG00005040316)	mmut (ENSOTSG00005040284)	fkbp1b (ENSOTSG00005040277)
Chinook salmon	MODERN SPECIES	29	WASF1 (ENSOTSG00005029123)	cdc40 (ENSOTSG00005029122)	METTL24 (ENSOTSG00005029121)	slc22a16 (ENSOTSG00005029119)	usta (ENSOTSG00005029118)	SAMD5 (ENSOTSG00005029117)	SAMD5 (ENSOTSG00005029116)	stxbp5a (ENSOTSG00005028976)	ADGB (ENSOTSG00005028962)	rab32a (ENSOTSG00005028960)	GRM1 (ENSOTSG00005028959)	ENSOTSG00005028958	ENSOTSG00005028909	STX11 (ENSOTSG00005028908)	akap12b (ENSOTSG00005028907) #17	esr1 (ENSOTSG00005028906) #22	ENSOTSG00005028905	ENSOTSG00005028904	prox1a (ENSOTSG00005028902)	lin9 (ENSOTSG00005028898)	ENSOTSG00005028897	acbd3 (ENSOTSG00005028896)	wtap (ENSOTSG00005028892)	sod2 (ENSOTSG00005028888)	FNDC1 (ENSOTSG00005028882)	otofa (ENSOTSG00005028859)	drc1 (ENSOTSG00005028848)	opn8a (ENSOTSG00005028847)	mmut (ENSOTSG00005028812)	fkbp1b (ENSOTSG00005028809)	wdcp (ENSOTSG00005028808)
Chinook salmon	MODERN SPECIES	43	cdc40 (ENSOTSG00005040533)	METTL24 (ENSOTSG00005040532)	slc22a16 (ENSOTSG00005040530)	ENSOTSG00005040529	usta (ENSOTSG00005040528)	sash1a (ENSOTSG00005040526)	SAMD5 (ENSOTSG00005040523)	stxbp5a (ENSOTSG00005040409)	ADGB (ENSOTSG00005040401)	rab32a (ENSOTSG00005040400)	GRM1 (ENSOTSG00005040397)	ENSOTSG00005040395	ENSOTSG00005040370	STX11 (ENSOTSG00005040365)	akap12b (ENSOTSG00005040364) #17	esr1 (ENSOTSG00005040362) #22	ENSOTSG00005040361	prox1a (ENSOTSG00005040359)	ENSOTSG00005040354	lin9 (ENSOTSG00005040348)	ENSOTSG00005040347	acbd3 (ENSOTSG00005040346)	wtap (ENSOTSG00005040342)	sod2 (ENSOTSG00005040341)	FNDC1 (ENSOTSG00005040333)	otofa (ENSOTSG00005040323)	drc1 (ENSOTSG00005040291)	opn8a (ENSOTSG00005040287)	mmut (ENSOTSG00005040215)	fkbp1b (ENSOTSG00005040213)	wdcp (ENSOTSG00005040212)
Coho salmon	MODERN SPECIES	3	WASF1 (ENSOKIG00005023552)	CDC40 (ENSOKIG00005023517)	METTL24 (ENSOKIG00005023508)	ENSOKIG00005023502	slc22a16 (ENSOKIG00005023489)	usta (ENSOKIG00005023468)	sash1a (ENSOKIG00005023260)	SAMD5 (ENSOKIG00005023206)	SAMD5 (ENSOKIG00005023200)	stxbp5a (ENSOKIG00005021784)	ADGB (ENSOKIG00005021673)	rab32a (ENSOKIG00005021641)	GRM1 (ENSOKIG00005021546)	ENSOKIG00005019438	ENSOKIG00005019359 #17	ENSOKIG00005019289 #22	ENSOKIG00005019255	ENSOKIG00005019242	PROX1 (ENSOKIG00005019222)	ENSOKIG00005019220	LIN9 (ENSOKIG00005019147)	ENSOKIG00005019123	ACBD3 (ENSOKIG00005019111)	sod2 (ENSOKIG00005019088)	WTAP (ENSOKIG00005019063)	ENSOKIG00005019053	ENSOKIG00005018674	otofa (ENSOKIG00005018306)	drc1 (ENSOKIG00005018160)	opn8a (ENSOKIG00005018141)	mmut (ENSOKIG00005017867)
Huchen	MODERN SPECIES	266	fkbp1b (ENSHHUG00000003777)	mmut (ENSHHUG00000003789)	opn8a (ENSHHUG00000003839)	drc1 (ENSHHUG00000003880)	otofa (ENSHHUG00000003900)	FNDC1 (ENSHHUG00000004155)	sod2 (ENSHHUG00000004257)	wtap (ENSHHUG00000004388)	ENSHHUG00000004437	acbd3 (ENSHHUG00000004442)	lin9 (ENSHHUG00000004446)	ENSHHUG00000004557	ENSHHUG00000004551	ENSHHUG00000004559	prox1a (ENSHHUG00000004587)	esr1 (ENSHHUG00000004593) #22	ENSHHUG00000004603	zbtb2b (ENSHHUG00000004663) #18	akap12b (ENSHHUG00000004667) #17	STX11 (ENSHHUG00000004669)	STX11 (ENSHHUG00000004675)	ENSHHUG00000004709	ENSHHUG00000004762	GRM1 (ENSHHUG00000004881)	rab32a (ENSHHUG00000004909)	ADGB (ENSHHUG00000004922)	ENSHHUG00000004934
Salmoninae	ANCESTRAL SPECIES	56	ENSGT00940000155490.a.c.b.e	ENSGT00510000048701.a.a.a	ENSGT00950000182906.b.a.i.b.b	ENSGT00940000162477.c.e.a	ENSGT01030000234595.A.b.a.b.b.a.a	ENSGT00950000183204.b.b.a	ENSGT00940000156796.c.b.s	ENSGT00940000156796.c.b.t	ENSGT00390000010101.a	ENSGT00940000153467.a.a.i	ENSGT01050000244948.c.b.a.a.a.j	ENSGT00940000157477 #16	ENSGT00730000111244.a.b.c #17	ENSGT00940000158401 #18	ENSGT00530000064023 #20	ENSGT00940000158133.f #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642.e #26	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000154531	ENSGT00390000007183	ENSGT00940000155913.d	ENSGT00390000009045	ENSGT01060000249589	ENSGT00530000063712.a.b	ENSGT00940000159266	ENSGT00550000074816.A.a	ENSGT00940000162510	ENSGT01100000263595	ENSGT00390000015191
Salmoninae_a	ANCESTRAL SPECIES	30	ENSGT00940000155490.a.c.b.e	ENSGT00950000182906.b.a.i.b.b	ENSGT00940000162477.c.e.a	ENSGT01030000234595.A.b.a.b.b.a.a	ENSGT00950000183204.b.b.a	ENSGT00940000156796.c.b.s	ENSGT00940000166257	ENSGT00940000156796.c.b.t	ENSGT00390000010101.a	ENSGT00940000153467.a.a.i	ENSGT01050000244948.c.b.a.a.a.j	ENSGT00940000157477 #16	ENSGT00730000111244.a.b.c #17	ENSGT00940000158401 #18	ENSGT00530000064023 #20	ENSGT00940000158133.f #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642.e #26	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000154531	ENSGT00390000007183	ENSGT00940000155913.d	ENSGT00390000009045	ENSGT01060000249589	ENSGT00530000063712.a.b	ENSGT00940000159266	ENSGT00550000074816.A.a	ENSGT00940000162510	ENSGT01100000263595	ENSGT00390000015191
Salmo	ANCESTRAL SPECIES	12	ENSGT00940000155490.a.c.a.d	ENSGT00940000155490.a.c.b.e	ENSGT00950000182906.b.a.i.b.b	ENSGT00940000162477.c.f	ENSGT01030000234595.A.b.a.b.b.b	ENSGT00950000183204.b.b.a	ENSGT00940000156796.c.b.s	ENSGT00940000156796.c.b.t	ENSGT00390000010101.a	ENSGT00940000153467.a.a.i	ENSGT01050000244948.c.b.a.a.a.j	ENSGT00940000157477 #16	ENSGT00730000111244.a.b.c #17	ENSGT00940000158401 #18	ENSGT00530000064023 #20	ENSGT00940000158133.f #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642.e #26	ENSGT00390000003560	ENSGT00940000154531	ENSGT00390000007183	ENSGT00940000155913.d	ENSGT00390000009045	ENSGT01060000249589	ENSGT00530000063712.a.b	ENSGT00940000159266	ENSGT00550000074816.A.a	ENSGT00940000162510	ENSGT01100000263595	ENSGT00390000015191	ENSGT00940000162505.a
Atlantic salmon	MODERN SPECIES	25	ENSSSAG00000103951	rab32a (ENSSSAG00000003559)	GRM1 (ENSSSAG00000003580)	ENSSSAG00000003634	ENSSSAG00000105583	ENSSSAG00000003648	ENSSSAG00000091488	ENSSSAG00000003849	ENSSSAG00000005457	mthfd1l (ENSSSAG00000005568) #16	ENSSSAG00000095310	akap12b (ENSSSAG00000007428) #17	zbtb2b (ENSSSAG00000119524) #18	ENSSSAG00000102101	armt1 (ENSSSAG00000007432) #20	esr1 (ENSSSAG00000007452) #22	SYNE1 (ENSSSAG00000007673) #23	myct1a (ENSSSAG00000095476) #26	serac1 (ENSSSAG00000009338)	DYNLT1 (ENSSSAG00000011252)	tmem181 (ENSSSAG00000011402)	tulp4a (ENSSSAG00000012057)	mrps10 (ENSSSAG00000012504)	ENSSSAG00000012699	msgn1 (ENSSSAG00000013523)	ENSSSAG00000012916	smc6 (ENSSSAG00000014804)	ENSSSAG00000039163	ENSSSAG00000100199	tmem18 (ENSSSAG00000039408)	alkal2a (ENSSSAG00000039438)
River trout	MODERN SPECIES		ENSSTUG00000011558	ENSSTUG00000011577	stxbp5a (ENSSTUG00000011658)	RAB32 (ENSSTUG00000013927)	GRM1 (ENSSTUG00000013942)	fbxo30b (ENSSTUG00000013954)	ENSSTUG00000013958	ENSSTUG00000014065	EPM2A (ENSSTUG00000014114)	UTRN (ENSSTUG00000014228)	stx11b.2 (ENSSTUG00000018351)	mthfd1l (ENSSTUG00000018403) #16	akap12b (ENSSTUG00000018953) #17	zbtb2b (ENSSTUG00000018963) #18	armt1 (ENSSTUG00000018965) #20	esr1 (ENSSTUG00000018990) #22	SYNE1 (ENSSTUG00000019479) #23	myct1a (ENSSTUG00000022197) #26	serac1 (ENSSTUG00000022211)	DYNLT1 (ENSSTUG00000022563)	tmem181 (ENSSTUG00000022573)	tulp4a (ENSSTUG00000022722)	mrps10 (ENSSTUG00000022781)	ENSSTUG00000022798	msgn1 (ENSSTUG00000022811)	ENSSTUG00000022827	si:dkey-119f1.1 (ENSSTUG00000022888)	ENSSTUG00000024536	ENSSTUG00000024640	tmem18 (ENSSTUG00000024652)	alkal2a (ENSSTUG00000024662)
Oncorhynchus	ANCESTRAL SPECIES	30	ENSGT00940000155490.a.c.b.e	ENSGT00950000182906.b.a.i.b.b	ENSGT00940000162477.c.e.a	ENSGT01030000234595.A.b.a.b.b.a.a	ENSGT00950000183204.b.b.a	ENSGT00940000156796.c.b.s	ENSGT00940000166257	ENSGT00940000156796.c.b.t	ENSGT00390000010101.a	ENSGT00940000153467.a.a.i	ENSGT01050000244948.c.b.a.a.a.j	ENSGT00940000157477 #16	ENSGT00730000111244.a.b.c #17	ENSGT00940000158401 #18	ENSGT00530000064023 #20	ENSGT00940000158133.f #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642.e #26	ENSGT00390000003560	ENSGT00390000004028	ENSGT00940000154531	ENSGT00390000007183	ENSGT00940000155913.d	ENSGT00390000009045	ENSGT01060000249589	ENSGT00530000063712.a.b	ENSGT00940000159266	ENSGT00550000074816.A.a	ENSGT00940000162510	ENSGT01100000263595	ENSGT00390000015191
Oncorhynchus_a	ANCESTRAL SPECIES	35	ENSGT00940000155490.a.c.b.e	ENSGT00950000182906.b.a.i.b.b	ENSGT00940000162477.c.e.a	ENSGT01030000234595.A.b.a.b.b.a.a	ENSGT00950000183204.b.b.a	ENSGT00940000156796.c.b.s	ENSGT00940000166257	ENSGT00940000156796.c.b.t	ENSGT00390000010101.a	ENSGT00940000153467.a.a.i	ENSGT01050000244948.c.b.a.a.a.j	ENSGT00940000157477 #16	ENSGT00730000111244.a.b.c #17	ENSGT00940000158401 #18	ENSGT00530000064023 #20	ENSGT00940000158133.f #22	ENSGT00940000154481.a.b #23	ENSGT00390000011642.e #26	ENSGT00390000003560	ENSGT00940000154531	ENSGT00390000007183	ENSGT00940000155913.d	ENSGT00390000009045	ENSGT01060000249589	ENSGT00530000063712.a.b	ENSGT00940000159266	ENSGT00550000074816.A.a	ENSGT00940000162510	ENSGT01100000263595	ENSGT00390000015191	ENSGT00940000162505.a
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	9	ENSOTSG00005028835	ENSOTSG00005028836	stxbp5a (ENSOTSG00005028844)	rab32a (ENSOTSG00005029580)	GRM1 (ENSOTSG00005029581)	fbxo30b (ENSOTSG00005030146)	ENSOTSG00005030149	ENSOTSG00005030322	EPM2A (ENSOTSG00005030344)	UTRN (ENSOTSG00005030358)	STX11 (ENSOTSG00005030377)	mthfd1l (ENSOTSG00005030384) #16	akap12b (ENSOTSG00005030799) #17	zbtb2b (ENSOTSG00005030802) #18	armt1 (ENSOTSG00005030803) #20	esr1 (ENSOTSG00005030805) #22	ENSOTSG00005030810 #23	myct1a (ENSOTSG00005030899) #26	serac1 (ENSOTSG00005030905)	DYNLT1 (ENSOTSG00005032944)	tmem181 (ENSOTSG00005032951)	tulp4a (ENSOTSG00005032962)	mrps10 (ENSOTSG00005032965)	ENSOTSG00005032966	msgn1 (ENSOTSG00005032968)	ENSOTSG00005032971	si:dkey-119f1.1 (ENSOTSG00005032982)	ENSOTSG00005033213	tmem18 (ENSOTSG00005033214)	alkal2a (ENSOTSG00005033216)	acp1 (ENSOTSG00005033217)
Chinook salmon	MODERN SPECIES	9	ENSOTSG00005033330	ENSOTSG00005033331	stxbp5a (ENSOTSG00005033341)	rab32a (ENSOTSG00005033437)	GRM1 (ENSOTSG00005033440)	fbxo30b (ENSOTSG00005033893)	ENSOTSG00005033894	ENSOTSG00005033897	EPM2A (ENSOTSG00005033917)	UTRN (ENSOTSG00005033925)	STX11 (ENSOTSG00005033951)	mthfd1l (ENSOTSG00005033952) #16	akap12b (ENSOTSG00005034396) #17	zbtb2b (ENSOTSG00005034398) #18	armt1 (ENSOTSG00005034399) #20	esr1 (ENSOTSG00005034433) #22	ENSOTSG00005022402 #23	myct1a (ENSOTSG00005022613) #26	serac1 (ENSOTSG00005022617)	DYNLT1 (ENSOTSG00005023897)	tmem181 (ENSOTSG00005023901)	tulp4a (ENSOTSG00005023906)	mrps10 (ENSOTSG00005023953)	msgn1 (ENSOTSG00005023955)	ENSOTSG00005023956	usta (ENSOTSG00005023957)	ENSOTSG00005023958	sash1a (ENSOTSG00005023959)	ENSOTSG00005023960	sesn1 (ENSOTSG00005023962)	cep57l1 (ENSOTSG00005023964)
Coho salmon	MODERN SPECIES	13	SAMD5 (ENSOKIG00005030856)	ASB2 (ENSOKIG00005030828)	stxbp5a (ENSOKIG00005028727)	rab32a (ENSOKIG00005028591)	GRM1 (ENSOKIG00005028097)	fbxo30b (ENSOKIG00005028067)	ENSOKIG00005027915	ENSOKIG00005027808	EPM2A (ENSOKIG00005027789)	UTRN (ENSOKIG00005014362)	stx11b.2 (ENSOKIG00005013860)	mthfd1l (ENSOKIG00005013451) #16	akap12b (ENSOKIG00005013372) #17	zbtb2b (ENSOKIG00005013365) #18	armt1 (ENSOKIG00005013358) #20	esr1 (ENSOKIG00005013214) #22	ENSOKIG00005013197	SYNE1 (ENSOKIG00005007393) #23	myct1a (ENSOKIG00005007061) #26	serac1 (ENSOKIG00005006345)	DYNLT1 (ENSOKIG00005006288)	tmem181 (ENSOKIG00005006185)	tulp4a (ENSOKIG00005006012)	mrps10 (ENSOKIG00005021747)	msgn1 (ENSOKIG00005021735)	ENSOKIG00005021728	si:dkey-119f1.1 (ENSOKIG00005021390)	ENSOKIG00005021236	ENSOKIG00005021212	tmem18 (ENSOKIG00005021196)	ACP1 (ENSOKIG00005021124)
Rainbow trout	MODERN SPECIES	25	stxbp5a (ENSOMYG00000013375)	ENSOMYG00000077362	rab32a (ENSOMYG00000015605)	GRM1 (ENSOMYG00000015671)	ENSOMYG00000061782	ENSOMYG00000016276	ENSOMYG00000016284	ENSOMYG00000016297	ENSOMYG00000048780	ENSOMYG00000016444	stx11b.2 (ENSOMYG00000018987)	mthfd1l (ENSOMYG00000019106) #16	akap12b (ENSOMYG00000019305) #17	zbtb2b (ENSOMYG00000019317) #18	armt1 (ENSOMYG00000019322) #20	esr1 (ENSOMYG00000019366) #22	SYNE1 (ENSOMYG00000019610) #23	ENSOMYG00000060085	myct1a (ENSOMYG00000020449) #26	serac1 (ENSOMYG00000020486)	gtf2h5 (ENSOMYG00000020958)	dynlt1b (ENSOMYG00000020966)	tmem181 (ENSOMYG00000021035)	tulp4a (ENSOMYG00000021592)	mrps10 (ENSOMYG00000021613)	ENSOMYG00000021620	msgn1 (ENSOMYG00000021633)	ENSOMYG00000021644	SMC6 (ENSOMYG00000021815)	ENSOMYG00000022672	ENSOMYG00000022708
Huchen	MODERN SPECIES	1224										STX11 (ENSHHUG00000004086)	mthfd1l (ENSHHUG00000004093) #16	ENSHHUG00000004534	akap12b (ENSHHUG00000004542) #17	zbtb2b (ENSHHUG00000004552) #18	armt1 (ENSHHUG00000004556) #20	esr1 (ENSHHUG00000004561) #22	SYNE1 (ENSHHUG00000005257) #23
Northern pike	MODERN SPECIES	17	foxo3b (ENSELUG00000017092)	afg1lb (ENSELUG00000017123)	snx3 (ENSELUG00000017150)	nr2e1 (ENSELUG00000017172)	OSTM1 (ENSELUG00000017212)	PLEKHG1 (ENSELUG00000017280) #15	tcp1 (ENSELUG00000017365)	acat2 (ENSELUG00000017338)	STX11 (ENSELUG00000017388)	stx11b.2 (ENSELUG00000017392)	mthfd1l (ENSELUG00000017415) #16	ENSELUG00000017427	zbtb2b (ENSELUG00000000662) #18	ENSELUG00000029127	armt1 (ENSELUG00000000664) #20	esr1 (ENSELUG00000000670) #22	ENSELUG00000027437	myct1a (ENSELUG00000032763) #26	serac1 (ENSELUG00000017822)	gtf2h5 (ENSELUG00000000724)	ENSELUG00000029928	ENSELUG00000017945	dynlt1 (ENSELUG00000017953)	tmem181 (ENSELUG00000017989)	tulp4a (ENSELUG00000018050)	mrps10 (ENSELUG00000018119)	ENSELUG00000018141	msgn1 (ENSELUG00000028658)	ENSELUG00000000743	si:dkey-119f1.1 (ENSELUG00000018236)	kcnk13b (ENSELUG00000014304)
Osteoglossiformes	ANCESTRAL SPECIES	4	ENSGT00550000074816.A.b	ENSGT00390000013227.a.a	ENSGT00940000159826.l	ENSGT00390000007445	ENSGT00940000169346	ENSGT00940000159373	ENSGT00390000018635.c	ENSGT00940000156778.k	ENSGT00510000048701.b	ENSGT00950000182906.b.a.i.a	ENSGT01030000234595.A.b.a.a	ENSGT00730000111123	ENSGT00940000163723.B	ENSGT00950000183204.b.b.b.a	ENSGT00390000012924.a #21	ENSGT00940000158133 #22	ENSGT00940000154481.a.b.a #23	ENSGT01030000234944.B	ENSGT00940000176900	ENSGT00940000155913.c	ENSGT00940000156674	ENSGT00940000156248.oc.a	ENSGT00940000156509	ENSGT00940000155086.A.g	ENSGT00490000043329.a.b.g.a.i	ENSGT00940000155459.x.b	ENSGT00940000153897.b.a.a.b	ENSGT00940000156975.d.a	ENSGT00940000154677.b.a	ENSGT00940000156484.b.c	ENSGT00390000017528
Asian bonytongue	MODERN SPECIES	6	afg1la (ENSSFOG00015013134)	ENSSFOG00015027076	zbtb24 (ENSSFOG00015013092)	ddo (ENSSFOG00015013069)	UST (ENSSFOG00015027575)	SASH1 (ENSSFOG00015012991)	STXBP5 (ENSSFOG00015012825)	GRM1 (ENSSFOG00015012773)	SHPRH (ENSSFOG00015012707)	fbxo30a (ENSSFOG00015012658)	ENSSFOG00015012636	stx11a (ENSSFOG00015012598)	ENSSFOG00015012588 #17	zbtb2a (ENSSFOG00015031321) #18	ENSSFOG00015025615 #21	esr1 (ENSSFOG00015011579) #22	SYNE1 (ENSSFOG00015011197) #23	TULP4 (ENSSFOG00015011110)	slc18b1 (ENSSFOG00015011056)	MYB (ENSSFOG00015026908)	ahi1 (ENSSFOG00015010997)	cga (ENSSFOG00015010973)	SYNCRIP (ENSSFOG00015010922)	SNX14 (ENSSFOG00015010812)	HTR1D (ENSSFOG00015010780)	ENSSFOG00015010726	colec11 (ENSSFOG00015010703)	ENSSFOG00015010662	sox11a (ENSSFOG00015010614)	CMPK2 (ENSSFOG00015010604)	rsad2 (ENSSFOG00015010483)
P. kingsleyae	MODERN SPECIES	34	ENSPKIG00000017509	zbtb24 (ENSPKIG00000017544)	ddo (ENSPKIG00000017565)	UST (ENSPKIG00000017585)	SASH1 (ENSPKIG00000017613)	SAMD5 (ENSPKIG00000017642)	STXBP5 (ENSPKIG00000017744)	GRM1 (ENSPKIG00000017921)	SHPRH (ENSPKIG00000017964)	ENSPKIG00000018051	fbxo30a (ENSPKIG00000018074)	ENSPKIG00000018096	ENSPKIG00000018135	stx11a (ENSPKIG00000018148)	zbtb2a (ENSPKIG00000018172) #18	esr1 (ENSPKIG00000018298) #22	ENSPKIG00000018556 #23	ENSPKIG00000018656	ENSPKIG00000018696	ENSPKIG00000018887 ##23	TULP4 (ENSPKIG00000019154)	slc18b1 (ENSPKIG00000019233)	myb (ENSPKIG00000019287)	ahi1 (ENSPKIG00000019324)	OTOF (ENSPKIG00000019389)	mapre3a (ENSPKIG00000019457)	dnmt3ab (ENSPKIG00000019638)	RAB10 (ENSPKIG00000019774)	hadhab (ENSPKIG00000019822)	pacc1 (ENSPKIG00000019895)	nenf (ENSPKIG00000019926)
Spotted gar	MODERN SPECIES	647	KIF3C (ENSLOCG00000016321)	ASXL2 (ENSLOCG00000016319)	dtnbb (ENSLOCG00000016318)	dnmt3ab (ENSLOCG00000016317)	dpysl5a (ENSLOCG00000016314)	mapre3b (ENSLOCG00000016310)	tmem214 (ENSLOCG00000016307)	stx11a (ENSLOCG00000017995)	ENSLOCG00000016305	ENSLOCG00000016304	mthfd1l (ENSLOCG00000016297) #16	akap12b (ENSLOCG00000016296) #17	zbtb2b (ENSLOCG00000016295) #18	rmnd1 (ENSLOCG00000016293)	CCDC170 (ENSLOCG00000016291) #21	esr1 (ENSLOCG00000016285) #22	SYNE1 (ENSLOCG00000016272) #23	myct1a (ENSLOCG00000016271) #26	serac1 (ENSLOCG00000016268)	gtf2h5 (ENSLOCG00000016267)	tulp4a (ENSLOCG00000016263)	tmem181 (ENSLOCG00000016260)	DYNLT1 (ENSLOCG00000016258)	ENSLOCG00000016257	tbx18 (ENSLOCG00000016254)	irak1bp1 (ENSLOCG00000016253)	ENSLOCG00000016251	PHIP (ENSLOCG00000016244)	HMGN3 (ENSLOCG00000016243)	LCA5 (ENSLOCG00000016242)	sh3bgrl2 (ENSLOCG00000016240)
Reedfish	MODERN SPECIES	11	SOGA3 (ENSECRG00000002417)	ENSECRG00000002433	ECHDC1 (ENSECRG00000002449)	rnf146 (ENSECRG00000002462)	rspo3 (ENSECRG00000002476)	ENSECRG00000002489	trmt11 (ENSECRG00000002496)	ENSECRG00000002519	hint3 (ENSECRG00000002530)	mthfd1l (ENSECRG00000002561) #16	AKAP12 (ENSECRG00000002609) #17	zbtb2b (ENSECRG00000002618) #18	rmnd1 (ENSECRG00000002627)	armt1 (ENSECRG00000002644) #20	CCDC170 (ENSECRG00000002672) #21	esr1 (ENSECRG00000002701) #22	SYNE1 (ENSECRG00000002759) #23	myct1a (ENSECRG00000002842) #26	serac1 (ENSECRG00000002858)	gtf2h5 (ENSECRG00000002881)	tulp4a (ENSECRG00000002895)	tmem181 (ENSECRG00000002921)	DYNLT1 (ENSECRG00000002940)	tbx18 (ENSECRG00000002962)	irak1bp1 (ENSECRG00000003097)	ENSECRG00000003107	PHIP (ENSECRG00000003175)	ENSECRG00000003269	LCA5 (ENSECRG00000003287)	sh3bgrl2 (ENSECRG00000003312)	slc18b1 (ENSECRG00000003372)
Elephant shark	MODERN SPECIES	1519	rrbp1a (ENSCMIG00000007336)	ENSCMIG00000007318	tmed4 (ENSCMIG00000007315)	ENSCMIG00000007313	pcmt (ENSCMIG00000007310) #11	ENSCMIG00000007302 #12	ppp1r14c (ENSCMIG00000007295)	iyd (ENSCMIG00000007293) #14	PLEKHG1 (ENSCMIG00000007287) #15	mthfd1l (ENSCMIG00000007030) #16	ENSCMIG00000006916 #17	zbtb2b (ENSCMIG00000006914) #18	rmnd1 (ENSCMIG00000006908)	armt1 (ENSCMIG00000006901) #20	CCDC170 (ENSCMIG00000006895) #21	esr1 (ENSCMIG00000006851) #22	SYNE1 (ENSCMIG00000006500) #23	tmem178a (ENSCMIG00000006284)	MAP4K3 (ENSCMIG00000006116)	CDKL4 (ENSCMIG00000005992)	RDH13 (ENSCMIG00000005985)	sos2 (ENSCMIG00000005958)	ENSCMIG00000005936	morn2 (ENSCMIG00000005929)	DHX57 (ENSCMIG00000005915)	gemin6 (ENSCMIG00000005893)	ENSCMIG00000005889	ENSCMIG00000005886	galm (ENSCMIG00000005884)	ENSCMIG00000005852	atl2 (ENSCMIG00000005812)