Hystricomorpha_a	ANCESTRAL SPECIES	27	ENSGT00940000153304.B	ENSGT00390000002319	ENSGT00940000160820 #7	ENSGT00940000156487 #8	ENSGT00940000160091 #9	ENSGT00390000010439 #10	ENSGT00940000154832.m.a #11	ENSGT00940000155226.q.a.d #12	ENSGT00940000156899 #13	ENSGT00940000158583 #14	ENSGT00950000183050.b.a #17	ENSGT00390000013544 #18	ENSGT00940000155014 #19	ENSGT00390000012837 #20	ENSGT00390000006191 #21	ENSGT00390000005665 #22	ENSGT00390000001071 #23	ENSGT00390000008727.a.b #24	ENSGT00390000012816	ENSGT00910000144250 #25	ENSGT00550000074912 #26	ENSGT00940000156159 #28	ENSGT00940000160102.p ##30	ENSGT00390000012397	ENSGT00950000183181.B.a #31	ENSGT00940000156452 #33	ENSGT00950000182998.A	ENSGT00390000002032 #34	ENSGT00390000018097 #35	ENSGT00390000001277	ENSGT00940000155077.e.a #36
Hystricomorpha_b	ANCESTRAL SPECIES	46	ENSGT00940000153304.B	ENSGT00390000002319	ENSGT00940000160820 #7	ENSGT00940000156487 #8	ENSGT00940000160091 #9	ENSGT00390000010439 #10	ENSGT00940000154832.m.a #11	ENSGT00940000155226.q.a.d #12	ENSGT00940000156899 #13	ENSGT00940000158583 #14	ENSGT00950000183050.b.a #17	ENSGT00390000013544 #18	ENSGT00940000155014 #19	ENSGT00390000012837 #20	ENSGT00390000006191 #21	ENSGT00390000005665 #22	ENSGT00390000001071 #23	ENSGT00390000008727.a.b #24	ENSGT00390000012816	ENSGT00910000144250 #25	ENSGT00550000074912 #26	ENSGT00940000156159 #28	ENSGT00940000160102.o.a #30	ENSGT00390000012397	ENSGT00950000183181.B.a #31	ENSGT00940000156452 #33	ENSGT00950000182998.A	ENSGT00390000002032 #34	ENSGT00390000018097 #35	ENSGT00390000001277	ENSGT00940000155077.e.a #36
Degu	MODERN SPECIES	48	ENSODEG00000014677 #7	SIX1 (ENSODEG00000014839) #8	SIX6 (ENSODEG00000015945) #9	C14orf39 (ENSODEG00000013986) #10	PPM1A (ENSODEG00000013831) #11	DHRS7 (ENSODEG00000014507) #12	PCNX4 (ENSODEG00000014733) #13	LRRC9 (ENSODEG00000014066) #14	ENSODEG00000014825 #15	ENSODEG00000020144 #16	PELI2 (ENSODEG00000015305) #17	TMEM260 (ENSODEG00000014526) #18	OTX2 (ENSODEG00000016325) #19	ENSODEG00000014704 #20	AP5M1 (ENSODEG00000014310) #21	NAA30 (ENSODEG00000014442) #22	CCDC198 (ENSODEG00000015422) #23	SLC35F4 (ENSODEG00000014001) #24	ENSODEG00000014617 #25	ENSODEG00000014244 #26	ENSODEG00000014881 #27	ENSODEG00000014309 #28	ENSODEG00000014880 #29	ENSODEG00000014925 #30	DACT1 (ENSODEG00000014574) #31	ENSODEG00000015435 #32	DAAM1 (ENSODEG00000014128) #33	L3HYPDH (ENSODEG00000015887) #34	JKAMP (ENSODEG00000014669) #35	ENSODEG00000014803 #36	ENSODEG00000014970 #37
Long-tailed chinchilla	MODERN SPECIES	173	SIX1 (ENSCLAG00000003638) #8	SIX6 (ENSCLAG00000003715) #9	C14orf39 (ENSCLAG00000004039) #10	ENSCLAG00000004367 #11	ENSCLAG00000004431 ##12	ENSCLAG00000003437 #12	PCNX4 (ENSCLAG00000003900) #13	LRRC9 (ENSCLAG00000004301) #14	PELI2 (ENSCLAG00000005349) #17	ENSCLAG00000005588	TMEM260 (ENSCLAG00000004193) #18	ENSCLAG00000004270	OTX2 (ENSCLAG00000004839) #19	EXOC5 (ENSCLAG00000005217) #20	AP5M1 (ENSCLAG00000006373) #21	NAA30 (ENSCLAG00000002822) #22	CCDC198 (ENSCLAG00000002962) #23	SLC35F4 (ENSCLAG00000003156) #24	ARMH4 (ENSCLAG00000003534)	ACTR10 (ENSCLAG00000003957) #25	PSMA3 (ENSCLAG00000004169) #26	ENSCLAG00000003914 #28	TIMM9 (ENSCLAG00000004069) #30	KIAA0586 (ENSCLAG00000004355)	ENSCLAG00000005082	DACT1 (ENSCLAG00000005231) #31	DAAM1 (ENSCLAG00000005812) #33	GPR135 (ENSCLAG00000003808)	L3HYPDH (ENSCLAG00000003825) #34	JKAMP (ENSCLAG00000004418) #35	CCDC175 (ENSCLAG00000004873)