Mus_A	ANCESTRAL SPECIES	12	ENSGT00940000157933 #7	ENSGT00390000013481.c.a #8	ENSGT00390000002030 #9	ENSGT00940000161456 #10	ENSGT00730000111340.g #11	ENSGT00940000157224 #12	ENSGT00940000158652 #13	ENSGT00530000064222.b #14	ENSGT00390000011854 #15	ENSGT00940000158237 #16	ENSGT00950000183050.b.a #17	ENSGT00390000013544 #18	ENSGT00940000155014 #19	ENSGT00390000012837 #20	ENSGT00390000006191 #21	ENSGT00390000005665 #22	ENSGT00390000001071 #23	ENSGT00390000008727.a.b #24	ENSGT00390000012816 #25	ENSGT00940000162920 #26	ENSGT00940000163035 #28	ENSGT00940000159214.r #30	ENSGT00940000159214.q #31	ENSGT00940000162669 #32	ENSGT00940000163286 #33	ENSGT00940000162171 #34	ENSGT00940000164116 #35	ENSGT00940000162873.m #36	ENSGT00940000162873.n #37	ENSGT00940000163142	ENSGT00940000163302
Mus_B	ANCESTRAL SPECIES	11	ENSGT00940000157933 #7	ENSGT00390000013481.c.a #8	ENSGT00390000002030 #9	ENSGT00940000161456 #10	ENSGT00730000111340.g #11	ENSGT00940000157224 #12	ENSGT00940000158652 #13	ENSGT00530000064222.b.e #14	ENSGT00390000011854 #15	ENSGT00940000158237 #16	ENSGT00950000183050.b.a #17	ENSGT00390000013544 #18	ENSGT00940000155014 #19	ENSGT00390000012837 #20	ENSGT00390000006191 #21	ENSGT00390000005665 #22	ENSGT00390000001071 #23	ENSGT00390000008727.a.b #24	ENSGT00390000012816 #25	ENSGT00940000162920 #26	ENSGT00940000163035.v ##28	ENSGT00940000159214.q #31	ENSGT00940000162669 #32	ENSGT00940000163286 #33	ENSGT00940000162171 #34	ENSGT00940000164116 #35	ENSGT00940000162873.m #36	ENSGT00940000162873.n #37	ENSGT00940000163142	ENSGT00940000163302	ENSGT00940000163623
Mouse	MODERN SPECIES	5	Samd4 (ENSMUSG00000021838) #7	Gch1 (ENSMUSG00000037580) #8	Wdhd1 (ENSMUSG00000037572) #9	Socs4 (ENSMUSG00000048379) #10	Mapk1ip1l (ENSMUSG00000021840) #11	Lgals3 (ENSMUSG00000050335) #12	Dlgap5 (ENSMUSG00000037544) #13	Fbxo34 (ENSMUSG00000037536) #14	Atg14 (ENSMUSG00000037526) #15	Ktn1 (ENSMUSG00000021843) #16	Peli2 (ENSMUSG00000021846) #17	Tmem260 (ENSMUSG00000036339) #18	Otx2 (ENSMUSG00000021848) #19	Exoc5 (ENSMUSG00000061244) #20	Ap5m1 (ENSMUSG00000036291) #21	Naa30 (ENSMUSG00000036282) #22	ccdc198 (ENSMUSG00000021850) #23	Slc35f4 (ENSMUSG00000021852) #24	Armh4 (ENSMUSG00000036242) #25	Or4n5 (ENSMUSG00000048933) #26	Or4l1 (ENSMUSG00000093825) #27	Or4l15 (ENSMUSG00000096254) #28	Or4k15b (ENSMUSG00000068437) #29	Or4k15c (ENSMUSG00000060523) #30	Or4k15 (ENSMUSG00000059488) #31	Or4k1 (ENSMUSG00000050030) #32	Or4k5 (ENSMUSG00000049011) #33	Or4k2 (ENSMUSG00000109835) #34	Or4k6 (ENSMUSG00000048080) #35	Or4n4 (ENSMUSG00000091873) #36	Or4n4b (ENSMUSG00000090874) #37
Mus_C	ANCESTRAL SPECIES	26	ENSGT00940000157933 #7	ENSGT00390000013481.c.a #8	ENSGT00390000002030 #9	ENSGT00940000161456 #10	ENSGT00730000111340.g #11	ENSGT00940000157224 #12	ENSGT00940000158652 #13	ENSGT00530000064222.b.e #14	ENSGT00390000011854 #15	ENSGT00940000158237 #16	ENSGT00950000183050.b.a #17	ENSGT00390000013544 #18	ENSGT00940000155014 #19	ENSGT00390000012837 #20	ENSGT00390000006191 #21	ENSGT00390000005665 #22	ENSGT00390000001071 #23	ENSGT00390000008727.a.b #24	ENSGT00390000012816 #25	ENSGT00940000162920 #26	ENSGT00940000163035.v ##28	ENSGT00940000159214.q #31	ENSGT00940000162669 #32	ENSGT00940000163286 #33	ENSGT00940000162171 #34	ENSGT00940000164116 #35	ENSGT00940000162873.m #36	ENSGT00940000162873.n #37	ENSGT00940000163142	ENSGT00940000163302	ENSGT00940000163623
spretus	MODERN SPECIES	5	Samd4 (MGP_SPRETEiJ_G0020049) #7	Gch1 (MGP_SPRETEiJ_G0020050) #8	Wdhd1 (MGP_SPRETEiJ_G0020051) #9	Socs4 (MGP_SPRETEiJ_G0020052) #10	Mapk1ip1l (MGP_SPRETEiJ_G0020053) #11	Lgals3 (MGP_SPRETEiJ_G0020054) #12	Dlgap5 (MGP_SPRETEiJ_G0020055) #13	Fbxo34 (MGP_SPRETEiJ_G0020056) #14	Atg14 (MGP_SPRETEiJ_G0020057) #15	Ktn1 (MGP_SPRETEiJ_G0020058) #16	Peli2 (MGP_SPRETEiJ_G0020059) #17	Tmem260 (MGP_SPRETEiJ_G0020060) #18	Otx2 (MGP_SPRETEiJ_G0020061) #19	Exoc5 (MGP_SPRETEiJ_G0020062) #20	Ap5m1 (MGP_SPRETEiJ_G0020063) #21	Naa30 (MGP_SPRETEiJ_G0020064) #22	ccdc198 (MGP_SPRETEiJ_G0020065) #23	Slc35f4 (MGP_SPRETEiJ_G0020066) #24	Armh4 (MGP_SPRETEiJ_G0020067) #25	Or4n5 (MGP_SPRETEiJ_G0020068) #26	MGP_SPRETEiJ_G0020069 ##28	MGP_SPRETEiJ_G0020070 ##28	MGP_SPRETEiJ_G0020071 #31	MGP_SPRETEiJ_G0020072 #31	MGP_SPRETEiJ_G0020073 #31	Or4k1 (MGP_SPRETEiJ_G0020074) #32	Or4k5 (MGP_SPRETEiJ_G0020075) #33	Or4k2 (MGP_SPRETEiJ_G0020076) #34	Or4k6 (MGP_SPRETEiJ_G0020077) #35	Or4n4 (MGP_SPRETEiJ_G0020078) #36	Or4n4b (MGP_SPRETEiJ_G0020079) #37
Steppe mouse	MODERN SPECIES	3167									ENSMSIG00000012199	Ktn1 (ENSMSIG00000012321) #16	Peli2 (ENSMSIG00000023523) #17	Tmem260 (ENSMSIG00000023555) #18	Otx2 (ENSMSIG00000023705) #19	Exoc5 (ENSMSIG00000023755) #20	Ap5m1 (ENSMSIG00000023805) #21	Naa30 (ENSMSIG00000023819) #22	ccdc198 (ENSMSIG00000023832) #23	Slc35f4 (ENSMSIG00000023850) #24	Armh4 (ENSMSIG00000023914) #25	ENSMSIG00000023942	Or4n5 (ENSMSIG00000023960) #26
Ryukyu mouse	MODERN SPECIES	5	Samd4 (MGP_CAROLIEiJ_G0019161) #7	Gch1 (MGP_CAROLIEiJ_G0019162) #8	Wdhd1 (MGP_CAROLIEiJ_G0019163) #9	Socs4 (MGP_CAROLIEiJ_G0019164) #10	Mapk1ip1l (MGP_CAROLIEiJ_G0019165) #11	Lgals3 (MGP_CAROLIEiJ_G0019166) #12	Dlgap5 (MGP_CAROLIEiJ_G0019167) #13	Fbxo34 (MGP_CAROLIEiJ_G0019168) #14	Atg14 (MGP_CAROLIEiJ_G0019169) #15	Ktn1 (MGP_CAROLIEiJ_G0019170) #16	Peli2 (MGP_CAROLIEiJ_G0019171) #17	Tmem260 (MGP_CAROLIEiJ_G0019172) #18	Otx2 (MGP_CAROLIEiJ_G0019173) #19	Exoc5 (MGP_CAROLIEiJ_G0019174) #20	Ap5m1 (MGP_CAROLIEiJ_G0019175) #21	Naa30 (MGP_CAROLIEiJ_G0019176) #22	ccdc198 (MGP_CAROLIEiJ_G0019177) #23	Slc35f4 (MGP_CAROLIEiJ_G0019178) #24	Armh4 (MGP_CAROLIEiJ_G0019179) #25	Or4n5 (MGP_CAROLIEiJ_G0019180) #26	MGP_CAROLIEiJ_G0019181 #31	MGP_CAROLIEiJ_G0019182 #31	MGP_CAROLIEiJ_G0019183 #31	Or4k1 (MGP_CAROLIEiJ_G0019184) #32	Or4k5 (MGP_CAROLIEiJ_G0019185) #33	Or4k2 (MGP_CAROLIEiJ_G0019186) #34	Or4k6 (MGP_CAROLIEiJ_G0019187) #35	Or4n4 (MGP_CAROLIEiJ_G0019188) #36	Or4n4b (MGP_CAROLIEiJ_G0019189) #37	Or4m1 (MGP_CAROLIEiJ_G0019190)	Or4q3 (MGP_CAROLIEiJ_G0019191)