Euteleostomi	ANCESTRAL SPECIES	74	ENSGT00990000209385	ENSGT01030000234767	ENSGT00940000154799 #7	ENSGT00940000155702 #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00940000154639 #12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00390000017580 #17	ENSGT00940000166845	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00530000063770.d	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00940000158264.a	ENSGT00530000063698.a.b	ENSGT00940000166801	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00940000156220	ENSGT00940000155230	ENSGT00940000153607	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a	ENSGT00390000006950	ENSGT00390000016237	ENSGT00950000183154.b.a.b
Sarcopterygii	ANCESTRAL SPECIES	3	ENSGT00990000209385	ENSGT01030000234767	ENSGT00940000154799 #7	ENSGT00940000155702 #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00940000154639 #12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00390000017580 #17	ENSGT00940000166845	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00530000063770.d	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00940000158264.a	ENSGT00530000063698.a.b	ENSGT00940000166801	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00940000156220	ENSGT00940000155230	ENSGT00940000153607	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a	ENSGT00390000006950	ENSGT00390000016237	ENSGT00950000183154.b.a.b
Tetrapoda	ANCESTRAL SPECIES	1	ENSGT00990000209385	ENSGT01030000234767	ENSGT00940000154799 #7	ENSGT00940000155702 #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00940000154639 #12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00390000017580 #17	ENSGT00940000166845	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00530000063770.d	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00940000158264.a	ENSGT00530000063698.a.b	ENSGT00940000166801	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00940000156220	ENSGT00940000155230	ENSGT00940000153607	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a	ENSGT00390000006950	ENSGT00390000016237	ENSGT00950000183154.b.a.b
Amniota	ANCESTRAL SPECIES	3	ENSGT00390000005826.b	ENSGT00640000091492.a	ENSGT00940000154799 #7	ENSGT01030000234979	ENSGT00940000155702 #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00910000147048 #11	ENSGT00940000154639 #12	ENSGT00940000154742.a #15	ENSGT00390000017580 #17	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00530000063770.d	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00940000158264.a	ENSGT00530000063698.a.b	ENSGT00940000166801	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00560000078638	ENSGT00940000156220	ENSGT00940000155230	ENSGT00940000153607.c.b	ENSGT00940000153607.d	ENSGT00940000153607.c.a	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a
Mammalia	ANCESTRAL SPECIES	3	ENSGT00640000091492.a	ENSGT00940000154799 #7	ENSGT01030000234979	ENSGT00940000155702 #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00910000147048 #11	ENSGT00940000154639 #12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00390000017580 #17	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00530000063770.d	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00940000158264.a	ENSGT00530000063698.a.b	ENSGT00940000166801	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00560000078638	ENSGT00940000156220	ENSGT00940000155230	ENSGT00940000153607.c.b	ENSGT00940000153607.d	ENSGT00940000153607.c.a	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a
Theria	ANCESTRAL SPECIES	7	ENSGT00640000091492.a	ENSGT00940000154799 #7	ENSGT01030000234979	ENSGT00940000155702 #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00910000147048 #11	ENSGT00940000154639 #12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00390000017580 #17	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00530000063770.d	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00940000158264.a	ENSGT00530000063698.a.b	ENSGT00940000166801	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00560000078638	ENSGT00940000156220	ENSGT00940000155230	ENSGT00940000153607.c.b	ENSGT00940000153607.c.a	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a	ENSGT00390000006950.n
Eutheria	ANCESTRAL SPECIES	20	ENSGT00640000091492.a	ENSGT00940000154799 #7	ENSGT00940000163147 #8	ENSGT00940000155702 #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00910000147048 #11	ENSGT00940000154639 #12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00390000017580 #17	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00530000063770.d	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00940000158264.a	ENSGT00530000063698.a.b	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00560000078638	ENSGT00940000156220	ENSGT00940000155230	ENSGT00940000153607.c.b	ENSGT00940000153607.c.a	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a	ENSGT00390000006950.n	ENSGT00390000018386
Boreoeutheria	ANCESTRAL SPECIES	22	ENSGT01030000234979	ENSGT00940000154799 #7	ENSGT00940000163147 #8	ENSGT00940000155702 #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00910000147048 #11	ENSGT00940000154639 #12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00390000017580 #17	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00530000063770.d	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00940000158264.a	ENSGT00530000063698.a.b	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00560000078638	ENSGT00940000156220	ENSGT00900000143817	ENSGT00940000155230	ENSGT00940000153607.c.b	ENSGT00940000153607.c.a	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a	ENSGT00390000006950.n
Euarchontoglires	ANCESTRAL SPECIES	22	ENSGT01030000234979	ENSGT00940000154799 #7	ENSGT00940000163147 #8	ENSGT00940000155702 #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00910000147048 #11	ENSGT00940000154639 #12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00390000017580 #17	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00530000063770.d	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00940000158264.a	ENSGT00530000063698.a.b	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00560000078638	ENSGT00940000156220	ENSGT00900000143817	ENSGT00940000155230	ENSGT00940000153607.c.b	ENSGT00940000153607.c.a	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a	ENSGT00390000006950.n
Primates	ANCESTRAL SPECIES	24	ENSGT00640000091492.a	ENSGT01030000234979	ENSGT00940000154799 #7	ENSGT00940000163147 #8	ENSGT00940000155702 #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00910000147048 #11	ENSGT00940000154639 #12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00390000017580 #17	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00940000158264.a	ENSGT00530000063698.a.b	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00560000078638	ENSGT00940000156220	ENSGT00900000143817	ENSGT00940000155230	ENSGT00940000153607.c.b	ENSGT00940000153607.c.a	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a	ENSGT00390000006950.n
Haplorrhini	ANCESTRAL SPECIES	25	ENSGT00640000091492.a	ENSGT01030000234979	ENSGT00940000154799 #7	ENSGT00940000163147 #8	ENSGT00940000155702 #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00910000147048 #11	ENSGT00940000154639 #12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00390000017580 #17	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00940000158264.a	ENSGT00530000063698.a.b	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00560000078638	ENSGT00940000156220	ENSGT00900000143817	ENSGT00940000155230	ENSGT00940000153607.c.b	ENSGT00940000153607.c.a	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a	ENSGT00390000006950.n
Simiiformes	ANCESTRAL SPECIES	24	ENSGT00640000091492.a	ENSGT01030000234979	ENSGT00940000154799 #7	ENSGT00940000163147 #8	ENSGT00940000155702.k #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00910000147048 #11	ENSGT00940000154639 #12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00390000017580.`b #17	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00940000158264.a	ENSGT00530000063698.a.b	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00560000078638	ENSGT00940000156220	ENSGT00900000143817	ENSGT00940000155230.fd	ENSGT00940000153607.c.b	ENSGT00940000153607.c.a	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a	ENSGT00390000006950.n
Catarrhini	ANCESTRAL SPECIES	23	ENSGT00940000154799.sb #7	ENSGT01030000234979	ENSGT00940000154799.rb.a ##7	ENSGT00940000163147 #8	ENSGT00940000155702.k #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00910000147048 #11	ENSGT00940000154639.o #12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00390000017580.`b #17	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00910000146973 #23	ENSGT00940000158929 #25	ENSGT00940000158264.a	ENSGT00530000063698.a.b	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00560000078638	ENSGT00940000156220	ENSGT00900000143817	ENSGT00940000155230.fd	ENSGT00940000153607.c.b	ENSGT00940000153607.c.a	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a
Cercopithecidae	ANCESTRAL SPECIES	25	ENSGT00640000091492.a	ENSGT01030000234979	ENSGT00940000154799.sb #7	ENSGT00940000163147 #8	ENSGT00940000155702.k #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00910000147048 #11	ENSGT00940000154639.o #12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00390000017580.`b #17	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00910000146973 #23	ENSGT00940000158929 #25	ENSGT00940000158264.a	ENSGT00530000063698.a.b	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00560000078638	ENSGT00940000165227	ENSGT00940000156220	ENSGT00900000143817	ENSGT00940000155230.fd	ENSGT00940000153607.c.b	ENSGT00940000153607.c.a	ENSGT00910000148828	ENSGT00940000154982
Cercopithecinae	ANCESTRAL SPECIES	22	ENSGT00940000163147 #8	ENSGT00940000155702.k #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00940000154639.o.a #12	ENSGT00910000147048 #11	ENSGT00940000154639.o.b ##12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00910000146997 #14	ENSGT00940000154576.i.b #16	ENSGT00390000017580.`b #17	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00910000146973 #23	ENSGT00940000158929 #25	ENSGT00940000158264.a	ENSGT00530000063698.a.b	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00560000078638	ENSGT00940000165227	ENSGT00940000156220	ENSGT00900000143817	ENSGT00940000155230.fd	ENSGT00940000153607.c.b	ENSGT00940000153607.c.a	ENSGT00910000148828	ENSGT00940000154982
Cercopithecinae_a	ANCESTRAL SPECIES	21	ENSGT00940000163147 #8	ENSGT00940000155702.k #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00940000154639.o.a #12	ENSGT00910000147048 #11	ENSGT00940000154639.o.b ##12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00910000146997 #14	ENSGT00940000154576.i.b #16	ENSGT00390000017580.`b #17	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00910000146973 #23	ENSGT00940000158929 #25	ENSGT00940000158264.a	ENSGT00530000063698.a.b	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00560000078638	ENSGT00940000165227	ENSGT00940000156220	ENSGT00900000143817	ENSGT00940000155230.fd	ENSGT00940000153607.c.b	ENSGT00940000153607.c.a	ENSGT00910000148828	ENSGT00940000154982
Cercopithecinae_b	ANCESTRAL SPECIES	25	ENSGT00940000154799.sb #7	ENSGT00940000163147 #8	ENSGT00940000155702.k #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00910000147048 #11	ENSGT00940000154639.o.a #12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00910000146997 #14	ENSGT00940000154576.i.b #16	ENSGT00390000017580.`b #17	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00910000146973 #23	ENSGT00940000158929 #25	ENSGT00940000158264.a	ENSGT00530000063698.a.b	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00560000078638	ENSGT00940000165227	ENSGT00940000156220	ENSGT00900000143817	ENSGT00940000155230.fd	ENSGT00940000153607.c.b	ENSGT00940000153607.c.a	ENSGT00910000148828	ENSGT00940000154982
Cercopithecinae_d	ANCESTRAL SPECIES	150	ENSGT00940000154799.sb #7	ENSGT00940000163147 #8	ENSGT00940000155702.k #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00910000147048 #11	ENSGT00940000154639.o.a #12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00910000146997 #14	ENSGT00940000154576.i.b #16	ENSGT00390000017580.`b #17	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00910000146973 #23	ENSGT00940000158929 #25	ENSGT00950000182878.b.b.`b.a.b.a.b #24
Sooty mangabey	MODERN SPECIES	558	ENSCATG00000041440 #7	ENSCATG00000028844 #8	RAB31 (ENSCATG00000024109) #9	PPP4R1 (ENSCATG00000035633) #10	ENSCATG00000023166 #11	RALBP1 (ENSCATG00000039218) #12	TWSG1 (ENSCATG00000035098) #13	ENSCATG00000030747 #14	ANKRD12 (ENSCATG00000035145) #15	ENSCATG00000037904 #16	NDUFV2 (ENSCATG00000043204) #17	MTCL1 (ENSCATG00000038923) #18	RAB12 (ENSCATG00000037784) #19	PTPRM (ENSCATG00000029857) #20	LRRC30 (ENSCATG00000015672) #21	LAMA1 (ENSCATG00000032537) #22	ENSCATG00000033782 #23	ENSCATG00000029695 #24	ARHGAP28 (ENSCATG00000012934) #25
Drill	MODERN SPECIES	1139													ENSMLEG00000043581 #19	PTPRM (ENSMLEG00000039673) #20	LRRC30 (ENSMLEG00000008486) #21	LAMA1 (ENSMLEG00000036451) #22	ENSMLEG00000037591 #23	ARHGAP28 (ENSMLEG00000041123) #25
Olive baboon	DUPLICATION
Olive baboon	MODERN SPECIES	10	VAPA (ENSPANG00000007689) #7	TXNDC2 (ENSPANG00000021713) #8	RAB31 (ENSPANG00000041614) #9	PPP4R1 (ENSPANG00000015969) #10	RALBP1 (ENSPANG00000008472) #12	ENSPANG00000031821	TWSG1 (ENSPANG00000007236) #13	ANKRD12 (ENSPANG00000008897) #15	ENSPANG00000008383 #17	ENSPANG00000009266 ##16	ENSPANG00000049362	MTCL1 (ENSPANG00000011897) #18	RAB12 (ENSPANG00000009320) #19	PTPRM (ENSPANG00000005610) #20	LRRC30 (ENSPANG00000003355) #21	ENSPANG00000019970 #22	ENSPANG00000044570 #25	L3MBTL4 (ENSPANG00000008894)	TMEM200C (ENSPANG00000007851)	EPB41L3 (ENSPANG00000006867)	ZBTB14 (ENSPANG00000003128)	AKAIN1 (ENSPANG00000009807)	ENSPANG00000042694	DLGAP1 (ENSPANG00000019969)	TGIF1 (ENSPANG00000012318)	ENSPANG00000045052	MYL12A (ENSPANG00000014852)	MYOM1 (ENSPANG00000001638)	LPIN2 (ENSPANG00000010436)	ENSPANG00000041277	EMILIN2 (ENSPANG00000003125)
Olive baboon	MODERN SPECIES	126																ENSPANG00000045995 #22	ENSPANG00000045172 #25
Macaca	ANCESTRAL SPECIES	22	ENSGT00940000163147 #8	ENSGT00940000155702.k #9	ENSGT00950000182971.B.b.d.`b.a	ENSGT00950000183066.a.b.a.a #10	ENSGT00910000147048 #11	ENSGT00940000154639.o.b ##12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00910000146997 #14	ENSGT00940000154576.i.b #16	ENSGT00390000017580.`b #17	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00910000146973 #23	ENSGT00940000158929 #25	ENSGT00940000158264.a	ENSGT00530000063698.a.b	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00560000078638	ENSGT00940000165227	ENSGT00940000156220	ENSGT00900000143817	ENSGT00940000155230.fd	ENSGT00940000153607.c.a	ENSGT00940000154982	ENSGT01030000234866	ENSGT00940000156313
Pig-tailed macaque	MODERN SPECIES	554	TXNDC2 (ENSMNEG00000035714) #8	ENSMNEG00000039292	RAB31 (ENSMNEG00000031511) #9	PPP4R1 (ENSMNEG00000029461) #10	ENSMNEG00000001867 #11	ENSMNEG00000036996 ##12	TWSG1 (ENSMNEG00000030452) #13	ENSMNEG00000044863 #14	ANKRD12 (ENSMNEG00000036122) #15	ENSMNEG00000025379 #16	NDUFV2 (ENSMNEG00000025588) #17	MTCL1 (ENSMNEG00000039424) #18	RAB12 (ENSMNEG00000040853) #19	PTPRM (ENSMNEG00000033386) #20	LRRC30 (ENSMNEG00000013340) #21	LAMA1 (ENSMNEG00000039096) #22	ENSMNEG00000044993 #23	ENSMNEG00000002106 #24	ARHGAP28 (ENSMNEG00000043678) #25	L3MBTL4 (ENSMNEG00000036243)	TMEM200C (ENSMNEG00000009357)	EPB41L3 (ENSMNEG00000041544)	ZBTB14 (ENSMNEG00000040776)	AKAIN1 (ENSMNEG00000031689)	ENSMNEG00000045453	ENSMNEG00000033878	DLGAP1 (ENSMNEG00000036526)	TGIF1 (ENSMNEG00000035101)	MYL12A (ENSMNEG00000041223)	MYOM1 (ENSMNEG00000029047)	ENSMNEG00000027836
Macaca_a	ANCESTRAL SPECIES	21	ENSGT00640000091492.a	ENSGT00940000154799.sb #7	ENSGT00940000163147 #8	ENSGT00940000155702.k #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00940000154639.o.b ##12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00910000146997 #14	ENSGT00940000154576.j ##16	ENSGT00390000017580.ab ##17	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00940000158264.a	ENSGT00530000063698.a.b	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT01030000240171	ENSGT00560000078638	ENSGT00940000156220	ENSGT00940000155230.fd	ENSGT00940000153607.c.a	ENSGT00940000154982	ENSGT01030000234866	ENSGT00940000156313	ENSGT01030000234633.B.a	ENSGT00390000006950.n
Crab-eating macaque	MODERN SPECIES	9	ENSMFAG00000064107	RAB31 (ENSMFAG00000038727) #9	PPP4R1 (ENSMFAG00000041605) #10	ENSMFAG00000030310 ##12	TWSG1 (ENSMFAG00000034284) #13	ENSMFAG00000051039 #14	ANKRD12 (ENSMFAG00000034700) #15	ENSMFAG00000044523 ##16	ENSMFAG00000001487 ##17	ENSMFAG00000056421	MTCL1 (ENSMFAG00000044143) #18	RAB12 (ENSMFAG00000043551) #19	ENSMFAG00000053616	PTPRM (ENSMFAG00000002650) #20	LRRC30 (ENSMFAG00000028007) #21	LAMA1 (ENSMFAG00000007292) #22	ARHGAP28 (ENSMFAG00000003744) #25	L3MBTL4 (ENSMFAG00000041924)	ENSMFAG00000052294	EPB41L3 (ENSMFAG00000032905)	ZBTB14 (ENSMFAG00000031970)	ENSMFAG00000057315	AKAIN1 (ENSMFAG00000031861)	ENSMFAG00000065343	DLGAP1 (ENSMFAG00000031490)	TGIF1 (ENSMFAG00000003221)	MYL12A (ENSMFAG00000036992)	MYOM1 (ENSMFAG00000041420)	ENSMFAG00000044192	LPIN2 (ENSMFAG00000038540)	EMILIN2 (ENSMFAG00000037105)
Rhesus	MODERN SPECIES	9	ENSMMUG00000057139	VAPA (ENSMMUG00000062614) #7	TXNDC2 (ENSMMUG00000054108) #8	RAB31 (ENSMMUG00000052840) #9	PPP4R1 (ENSMMUG00000060986) #10	RALBP1 (ENSMMUG00000058728) ##12	TWSG1 (ENSMMUG00000052003) #13	ANKRD12 (ENSMMUG00000049523) #15	ENSMMUG00000055208 ##16	NDUFV2 (ENSMMUG00000049556) ##17	MTCL1 (ENSMMUG00000015761) #18	RAB12 (ENSMMUG00000062113) #19	PTPRM (ENSMMUG00000000768) #20	LRRC30 (ENSMMUG00000049108) #21	ENSMMUG00000062466	ENSMMUG00000011408 #22	ARHGAP28 (ENSMMUG00000014506) #25	L3MBTL4 (ENSMMUG00000016302)	TMEM200C (ENSMMUG00000055350)	EPB41L3 (ENSMMUG00000019418)	ZBTB14 (ENSMMUG00000022005)	ENSMMUG00000058439	AKAIN1 (ENSMMUG00000059913)	DLGAP1 (ENSMMUG00000001471)	TGIF1 (ENSMMUG00000005086)	ENSMMUG00000063768	ENSMMUG00000063593	MYL12B (ENSMMUG00000019893)	MYOM1 (ENSMMUG00000019892)	ENSMMUG00000061540	LPIN2 (ENSMMUG00000017548)
Vervet Monkey	DUPLICATION
Vervet Monkey	MODERN SPECIES	9	APCDD1 (ENSCSAG00000017546)	VAPA (ENSCSAG00000017549) #7	TXNDC2 (ENSCSAG00000017551) #8	RAB31 (ENSCSAG00000017553) #9	PPP4R1 (ENSCSAG00000017556) #10	RALBP1 (ENSCSAG00000017558) ##12	TWSG1 (ENSCSAG00000017560) #13	ANKRD12 (ENSCSAG00000017561) #15	ENSCSAG00000017562 #16	NDUFV2 (ENSCSAG00000017564) #17	MTCL1 (ENSCSAG00000017568) #18	RAB12 (ENSCSAG00000017569) #19	PTPRM (ENSCSAG00000017571) #20	LRRC30 (ENSCSAG00000018577) #21	ENSCSAG00000017573 #22	ENSCSAG00000017577 #22	ARHGAP28 (ENSCSAG00000017578) #25	L3MBTL4 (ENSCSAG00000017582)	TMEM200C (ENSCSAG00000018576)	EPB41L3 (ENSCSAG00000017587)	ZBTB14 (ENSCSAG00000017588)	AKAIN1 (ENSCSAG00000017591)	ENSCSAG00000017594	DLGAP1 (ENSCSAG00000017596)	TGIF1 (ENSCSAG00000017597)	MYL12B (ENSCSAG00000017599)	MYL12A (ENSCSAG00000017601)	MYOM1 (ENSCSAG00000017602)	LPIN2 (ENSCSAG00000017604)	EMILIN2 (ENSCSAG00000017605)	SMCHD1 (ENSCSAG00000017608)
Vervet Monkey	MODERN SPECIES	9	NAPG (ENSCSAG00000017545)	APCDD1 (ENSCSAG00000017546)	VAPA (ENSCSAG00000017549) #7	TXNDC2 (ENSCSAG00000017551) #8	RAB31 (ENSCSAG00000017553) #9	PPP4R1 (ENSCSAG00000017556) #10	RALBP1 (ENSCSAG00000017558) ##12	TWSG1 (ENSCSAG00000017560) #13	ANKRD12 (ENSCSAG00000017561) #15	ENSCSAG00000017562 #16	NDUFV2 (ENSCSAG00000017564) #17	MTCL1 (ENSCSAG00000017568) #18	RAB12 (ENSCSAG00000017569) #19	PTPRM (ENSCSAG00000017571) #20	LRRC30 (ENSCSAG00000018577) #21	ENSCSAG00000017573 #22	ENSCSAG00000017577 #22	ARHGAP28 (ENSCSAG00000017578) #25	L3MBTL4 (ENSCSAG00000017582)	TMEM200C (ENSCSAG00000018576)	EPB41L3 (ENSCSAG00000017587)	ZBTB14 (ENSCSAG00000017588)	AKAIN1 (ENSCSAG00000017591)	ENSCSAG00000017594	DLGAP1 (ENSCSAG00000017596)	TGIF1 (ENSCSAG00000017597)	MYL12B (ENSCSAG00000017599)	MYL12A (ENSCSAG00000017601)	MYOM1 (ENSCSAG00000017602)	LPIN2 (ENSCSAG00000017604)	EMILIN2 (ENSCSAG00000017605)
Rhinopithecus	ANCESTRAL SPECIES	196	ENSGT01030000234979	ENSGT00940000154799.sb #7	ENSGT00940000163147 #8	ENSGT00940000155702.k #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00940000154639.o #12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00910000146997 #14	ENSGT00940000154576.i.b #16	ENSGT00390000017580.`b #17	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00910000146973 #23	ENSGT00940000158929 #25	ENSGT00940000158264.a	ENSGT00530000063698.a.b	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00560000078638
Black snub-nosed monkey	MODERN SPECIES	2611					PPP4R1 (ENSRBIG00000042079) #10	RALBP1 (ENSRBIG00000014842) #12	TWSG1 (ENSRBIG00000039097) #13	ANKRD12 (ENSRBIG00000030143) #15	ENSRBIG00000029906 #14	ENSRBIG00000043838 #16	ENSRBIG00000039620 ##17	MTCL1 (ENSRBIG00000041198) #18	RAB12 (ENSRBIG00000028760) #19	PTPRM (ENSRBIG00000037946) #20	LRRC30 (ENSRBIG00000029811) #21	LAMA1 (ENSRBIG00000032038) #22	ENSRBIG00000033307 #23
Golden snub-nosed monkey	MODERN SPECIES	1740	ENSRROG00000030485 #7	TXNDC2 (ENSRROG00000029697) #8	RAB31 (ENSRROG00000027824) #9	PPP4R1 (ENSRROG00000028801) #10	RALBP1 (ENSRROG00000029961) #12	TWSG1 (ENSRROG00000045634) #13	ENSRROG00000041587 #14	ANKRD12 (ENSRROG00000029328) #15	ENSRROG00000028802 ##16	NDUFV2 (ENSRROG00000040789) #17	MTCL1 (ENSRROG00000045370) #18	RAB12 (ENSRROG00000019249) #19	ENSRROG00000035341	PTPRM (ENSRROG00000037638) #20	LRRC30 (ENSRROG00000018176) #21	LAMA1 (ENSRROG00000031656) #22	ENSRROG00000036253 #23	ENSRROG00000042304 ##24	ARHGAP28 (ENSRROG00000042703) #25	L3MBTL4 (ENSRROG00000042453)	TMEM200C (ENSRROG00000020933)	EPB41L3 (ENSRROG00000042750)	ZBTB14 (ENSRROG00000029019)	AKAIN1 (ENSRROG00000036584)
Hominoidea	ANCESTRAL SPECIES	24	ENSGT00940000154799.sb #7	ENSGT01030000234979	ENSGT00940000154799.rb.a ##7	ENSGT00940000163147 #8	ENSGT00940000155702.k #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00910000147048 #11	ENSGT00940000154639.o #12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00390000017580.`b #17	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00910000146973 #23	ENSGT00940000158929 #25	ENSGT00940000158264.a	ENSGT00530000063698.a.b	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00560000078638	ENSGT00940000156220	ENSGT00900000143817	ENSGT00940000155230.fd	ENSGT00940000153607.c.b	ENSGT00940000153607.c.a	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a
Hominidae	ANCESTRAL SPECIES	24	ENSGT00640000091492.a	ENSGT00940000154799.rb.a ##7	ENSGT00940000163147 #8	ENSGT00940000155702.k #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00910000147048 #11	ENSGT00940000154639.o #12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00390000017580.`b #17	ENSGT00390000017580.ab ##17	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00910000146973 #23	ENSGT00940000158929 #25	ENSGT00940000158264.a	ENSGT00530000063698.a.b	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00560000078638	ENSGT00940000156220	ENSGT00900000143817	ENSGT00940000155230.fd	ENSGT00940000153607.c.b	ENSGT00940000153607.c.a	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	26	ENSGT00940000154799.rb.a ##7	ENSGT00940000163147 #8	ENSGT00940000155702.k #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00910000147048 #11	ENSGT00940000154639.o #12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00910000146997 #14	ENSGT00390000017580.ab ##17	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT00940000155622.e.a.a	ENSGT00940000157124 #22	ENSGT00910000146973 #23	ENSGT00940000158929 #25	ENSGT00940000158264.a	ENSGT00530000063698.a.b	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00560000078638	ENSGT00940000156220	ENSGT00900000143817	ENSGT00940000155230.fd	ENSGT00940000153607.c.b	ENSGT00940000153607.c.a	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a
Homo/Pan group	ANCESTRAL SPECIES	25	ENSGT00940000154799.rb.a ##7	ENSGT00940000163147 #8	ENSGT00940000155702.k #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00910000147048 #11	ENSGT00940000154639.o #12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00910000146997 #14	ENSGT00390000017580.ab ##17	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT00940000155622.e.a.a	ENSGT00940000157124 #22	ENSGT00910000146973 #23	ENSGT00940000158929 #25	ENSGT00940000158264.a	ENSGT00530000063698.a.b	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00560000078638	ENSGT00940000156220	ENSGT00900000143817	ENSGT00940000155230.fd	ENSGT00940000153607.c.b	ENSGT00940000153607.c.a	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a
Pan	ANCESTRAL SPECIES	24	ENSGT00940000154799.rb.a ##7	ENSGT00940000163147 #8	ENSGT00940000155702.k #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00910000147048 #11	ENSGT00940000154639.o #12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00910000146997 #14	ENSGT00390000017580.ab ##17	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT00940000155622.e.a.a	ENSGT00940000157124 #22	ENSGT00910000146973 #23	ENSGT00940000158929 #25	ENSGT00940000158264.a	ENSGT00530000063698.a.b	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00560000078638	ENSGT00940000156220	ENSGT00900000143817	ENSGT00940000155230.fd	ENSGT00940000153607.c.b	ENSGT00940000153607.c.a	ENSGT00940000154982	ENSGT00940000156313	ENSGT00940000154174.t
Bonobo	MODERN SPECIES	9	ENSPPAG00000020801 #7	ENSPPAG00000021252	RAB31 (ENSPPAG00000023672) #9	PPP4R1 (ENSPPAG00000027340) #10	RALBP1 (ENSPPAG00000029236) #12	ENSPPAG00000032624 #11	TWSG1 (ENSPPAG00000028505) #13	ANKRD12 (ENSPPAG00000029691) #15	ENSPPAG00000031748 #14	ENSPPAG00000032489 ##17	MTCL1 (ENSPPAG00000034933) #18	ENSPPAG00000009152 #19	PTPRM (ENSPPAG00000022548) #20	LRRC30 (ENSPPAG00000032601) #21	ENSPPAG00000029118	LAMA1 (ENSPPAG00000031074) #22	ENSPPAG00000041462 #23	ARHGAP28 (ENSPPAG00000027220) #25	ENSPPAG00000017617	TMEM200C (ENSPPAG00000026280)	EPB41L3 (ENSPPAG00000031576)	ZBTB14 (ENSPPAG00000023957)	ENSPPAG00000030574	DLGAP1 (ENSPPAG00000032706)	ENSPPAG00000036002	ENSPPAG00000034209	MYL12B (ENSPPAG00000016699)	MYL12A (ENSPPAG00000037395)	MYOM1 (ENSPPAG00000037926)	LPIN2 (ENSPPAG00000036687)	ENSPPAG00000043766
Chimpanzee	MODERN SPECIES	9	APCDD1 (ENSPTRG00000009865)	VAPA (ENSPTRG00000052052) ##7	TXNDC2 (ENSPTRG00000023734) #8	RAB31 (ENSPTRG00000046336) #9	PPP4R1 (ENSPTRG00000009860) #10	RALBP1 (ENSPTRG00000009859) #12	ENSPTRG00000049443 #11	TWSG1 (ENSPTRG00000009858) #13	ANKRD12 (ENSPTRG00000009857) #15	ENSPTRG00000044424 #14	NDUFV2 (ENSPTRG00000009856) ##17	MTCL1 (ENSPTRG00000009854) #18	RAB12 (ENSPTRG00000009853) #19	PTPRM (ENSPTRG00000009851) #20	LRRC30 (ENSPTRG00000029358) #21	LAMA1 (ENSPTRG00000009849) #22	ENSPTRG00000050179 #23	ARHGAP28 (ENSPTRG00000009847) #25	L3MBTL4 (ENSPTRG00000009845)	TMEM200C (ENSPTRG00000029353)	EPB41L3 (ENSPTRG00000009844)	ZBTB14 (ENSPTRG00000029352)	AKAIN1 (ENSPTRG00000052521)	DLGAP1 (ENSPTRG00000009839)	ENSPTRG00000044604	TGIF1 (ENSPTRG00000009838)	MYL12B (ENSPTRG00000009836)	MYL12A (ENSPTRG00000009835)	MYOM1 (ENSPTRG00000009834)	LPIN2 (ENSPTRG00000009833)	ENSPTRG00000048371
Human	MODERN SPECIES	9	PIEZO2 (ENSG00000154864)	NAPG (ENSG00000134265)	APCDD1 (ENSG00000154856)	VAPA (ENSG00000101558) ##7	TXNDC2 (ENSG00000168454) #8	RAB31 (ENSG00000168461) #9	PPP4R1 (ENSG00000154845) #10	RALBP1 (ENSG00000017797) #12	TWSG1 (ENSG00000128791) #13	ANKRD12 (ENSG00000101745) #15	NDUFV2 (ENSG00000178127) #17	MTCL1 (ENSG00000168502) #18	RAB12 (ENSG00000206418) #19	PTPRM (ENSG00000173482) #20	LRRC30 (ENSG00000206422) #21	LAMA1 (ENSG00000101680) #22	ARHGAP28 (ENSG00000088756) #25	L3MBTL4 (ENSG00000154655)	TMEM200C (ENSG00000206432)	EPB41L3 (ENSG00000082397)	ZBTB14 (ENSG00000198081)	AKAIN1 (ENSG00000231824)	DLGAP1 (ENSG00000170579)	TGIF1 (ENSG00000177426)	MYL12B (ENSG00000118680)	MYL12A (ENSG00000101608)	MYOM1 (ENSG00000101605)	LPIN2 (ENSG00000101577)	EMILIN2 (ENSG00000132205)	SMCHD1 (ENSG00000101596)	NDC80 (ENSG00000080986)
Gorilla	MODERN SPECIES	9	ENSGGOG00000007700 #8	ENSGGOG00000025907	RAB31 (ENSGGOG00000000250) #9	PPP4R1 (ENSGGOG00000006330) #10	RALBP1 (ENSGGOG00000023120) #12	ENSGGOG00000036487 #11	TWSG1 (ENSGGOG00000004433) #13	ANKRD12 (ENSGGOG00000015949) #15	ENSGGOG00000037333 #14	ENSGGOG00000028489 ##17	MTCL1 (ENSGGOG00000016277) #18	ENSGGOG00000002654 #19	PTPRM (ENSGGOG00000003702) #20	LRRC30 (ENSGGOG00000028005) #21	ENSGGOG00000042265	LAMA1 (ENSGGOG00000016323) #22	ENSGGOG00000042094 #23	ARHGAP28 (ENSGGOG00000000529) #25	L3MBTL4 (ENSGGOG00000015056)	ENSGGOG00000026491	EPB41L3 (ENSGGOG00000012450)	ZBTB14 (ENSGGOG00000024397)	AKAIN1 (ENSGGOG00000040105)	DLGAP1 (ENSGGOG00000034891)	ENSGGOG00000012694	MYL12B (ENSGGOG00000004051)	MYL12A (ENSGGOG00000011429)	MYOM1 (ENSGGOG00000044057)	LPIN2 (ENSGGOG00000000330)	EMILIN2 (ENSGGOG00000000329)	SMCHD1 (ENSGGOG00000017005)
Orangutan	MODERN SPECIES	9	NAPG (ENSPPYG00000009004)	APCDD1 (ENSPPYG00000009005)	VAPA (ENSPPYG00000009006) ##7	ENSPPYG00000009007 #8	RAB31 (ENSPPYG00000009008) #9	PPP4R1 (ENSPPYG00000009009) #10	RALBP1 (ENSPPYG00000009010) #12	TWSG1 (ENSPPYG00000009011) #13	ANKRD12 (ENSPPYG00000009012) #15	ENSPPYG00000033372	NDUFV2 (ENSPPYG00000009013) #17	MTCL1 (ENSPPYG00000009014) #18	RAB12 (ENSPPYG00000009015) #19	PTPRM (ENSPPYG00000009016) #20	LRRC30 (ENSPPYG00000009018) #21	LAMA1 (ENSPPYG00000009019) #22	ARHGAP28 (ENSPPYG00000009021) #25	L3MBTL4 (ENSPPYG00000009022)	TMEM200C (ENSPPYG00000009023)	EPB41L3 (ENSPPYG00000009024)	ZBTB14 (ENSPPYG00000009025)	AKAIN1 (ENSPPYG00000037539)	DLGAP1 (ENSPPYG00000009027)	ENSPPYG00000009030	MYL12B (ENSPPYG00000009032)	MYL12A (ENSPPYG00000009033)	MYOM1 (ENSPPYG00000009034)	LPIN2 (ENSPPYG00000009036)	ENSPPYG00000035335	SMCHD1 (ENSPPYG00000009037)	NDC80 (ENSPPYG00000009039)
Gibbon	MODERN SPECIES	19	APCDD1 (ENSNLEG00000035005)	ENSNLEG00000034712	VAPA (ENSNLEG00000032272) ##7	ENSNLEG00000006963 #8	RAB31 (ENSNLEG00000006959) #9	PPP4R1 (ENSNLEG00000006952) #10	ENSNLEG00000032605 #11	RALBP1 (ENSNLEG00000006950) #12	TWSG1 (ENSNLEG00000006949) #13	ANKRD12 (ENSNLEG00000006948) #15	NDUFV2 (ENSNLEG00000006944) #17	MTCL1 (ENSNLEG00000006940) #18	ENSNLEG00000006939 #19	PTPRM (ENSNLEG00000006934) #20	LRRC30 (ENSNLEG00000018547) #21	LAMA1 (ENSNLEG00000006930) #22	ARHGAP28 (ENSNLEG00000006927) #25	L3MBTL4 (ENSNLEG00000006925)	TMEM200C (ENSNLEG00000006924)	EPB41L3 (ENSNLEG00000006919)	ZBTB14 (ENSNLEG00000006918)	AKAIN1 (ENSNLEG00000028125)	ENSNLEG00000006916	ENSNLEG00000035249	DLGAP1 (ENSNLEG00000006910)	ENSNLEG00000028451	MYL12B (ENSNLEG00000032335)	MYL12A (ENSNLEG00000026933)	MYOM1 (ENSNLEG00000006889)	ENSNLEG00000032827	LPIN2 (ENSNLEG00000006886)
Platyrrhini	ANCESTRAL SPECIES	26	ENSGT00640000091492.a	ENSGT01030000234979	ENSGT00940000154799 #7	ENSGT00940000163147 #8	ENSGT00940000155702.k #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00910000147048 #11	ENSGT00940000154639 #12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00390000017580.`b #17	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00940000158264.a	ENSGT00530000063698.a.b	ENSGT00940000157047.i	ENSGT00940000158052.a.f	ENSGT00560000078638	ENSGT00940000156220	ENSGT00940000155230.fd.a	ENSGT00940000153607.c.b	ENSGT00940000153607.c.a	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a	ENSGT00390000006950.n	ENSGT00390000018386
Cebidae	ANCESTRAL SPECIES	28	ENSGT00940000154456	ENSGT00390000005826.b	ENSGT00640000091492.a	ENSGT00940000154799 #7	ENSGT00940000163147 #8	ENSGT00940000155702.k #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00940000154639 #12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00390000017580.ab ##17	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00940000158264.a	ENSGT00530000063698.a.b	ENSGT00940000157047.i	ENSGT00940000158052.a.f	ENSGT00560000078638	ENSGT00940000156220	ENSGT00940000155230.fd.a	ENSGT00940000153607.c.b	ENSGT00940000153607.c.a	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a	ENSGT00390000006950.n	ENSGT00390000018386
Cebidae_a	ANCESTRAL SPECIES	23	ENSGT00940000154456	ENSGT00390000005826.b	ENSGT00640000091492.a	ENSGT00940000154799 #7	ENSGT00940000163147 #8	ENSGT00940000155702.k #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00940000154639 #12	ENSGT00390000007058 #13	ENSGT00940000154742.a.o #15	ENSGT00390000017580.`b #17	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00940000158264.a	ENSGT00530000063698.a.b	ENSGT00940000157047.i	ENSGT00940000158052.a.f	ENSGT00560000078638	ENSGT00940000156220	ENSGT00910000148299	ENSGT00940000155230.fd.a	ENSGT00940000153607.c.b	ENSGT00940000153607.c.a	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a	ENSGT00390000006950.n
Bolivian squirrel monkey	MODERN SPECIES	53	ENSSBOG00000035847	VAPA (ENSSBOG00000035191) #7	TXNDC2 (ENSSBOG00000024428) #8	RAB31 (ENSSBOG00000024722) #9	PPP4R1 (ENSSBOG00000033012) #10	RALBP1 (ENSSBOG00000024870) #12	TWSG1 (ENSSBOG00000035288) #13	ENSSBOG00000029909 #15	NDUFV2 (ENSSBOG00000035610) #17	ENSSBOG00000025300	MTCL1 (ENSSBOG00000031217) #18	RAB12 (ENSSBOG00000021125) #19	PTPRM (ENSSBOG00000035977) #20	LRRC30 (ENSSBOG00000009092) #21	ENSSBOG00000018693	LAMA1 (ENSSBOG00000033137) #22	ENSSBOG00000036132	ARHGAP28 (ENSSBOG00000031680) #25	L3MBTL4 (ENSSBOG00000023649)	TMEM200C (ENSSBOG00000034209)	ENSSBOG00000025802	EPB41L3 (ENSSBOG00000024756)	ZBTB14 (ENSSBOG00000034371)	AKAIN1 (ENSSBOG00000031954)	ENSSBOG00000035366	ENSSBOG00000031178	DLGAP1 (ENSSBOG00000031193)	TGIF1 (ENSSBOG00000036056)	ENSSBOG00000022177	MYL12A (ENSSBOG00000019169)	MYOM1 (ENSSBOG00000036143)
Capuchin	MODERN SPECIES	162					PPP4R1 (ENSCCAG00000023335) #10	ENSCCAG00000037472	RALBP1 (ENSCCAG00000023709) #12	TWSG1 (ENSCCAG00000015677) #13	ANKRD12 (ENSCCAG00000027145) #15	NDUFV2 (ENSCCAG00000025556) #17	ENSCCAG00000032300	MTCL1 (ENSCCAG00000034435) #18	RAB12 (ENSCCAG00000022862) #19	PTPRM (ENSCCAG00000030484) #20	LRRC30 (ENSCCAG00000032058) #21	LAMA1 (ENSCCAG00000024596) #22	ARHGAP28 (ENSCCAG00000020308) #25	L3MBTL4 (ENSCCAG00000022099)	ENSCCAG00000037663	EPB41L3 (ENSCCAG00000009201)	ENSCCAG00000035725	AKAIN1 (ENSCCAG00000026295)
Marmoset	MODERN SPECIES	4	ENSCJAG00000085038 #8	RAB31 (ENSCJAG00000048382) #9	PPP4R1 (ENSCJAG00000004459) #10	RALBP1 (ENSCJAG00000004430) #12	ENSCJAG00000080850	TWSG1 (ENSCJAG00000040675) #13	ANKRD12 (ENSCJAG00000045973) #15	ENSCJAG00000004307 ##17	ENSCJAG00000071832	ENSCJAG00000052694	MTCL1 (ENSCJAG00000004279) #18	RAB12 (ENSCJAG00000015468) #19	PTPRM (ENSCJAG00000015472) #20	ENSCJAG00000077078	LRRC30 (ENSCJAG00000015552) #21	LAMA1 (ENSCJAG00000015553) #22	ARHGAP28 (ENSCJAG00000015612) #25	ENSCJAG00000082622	ENSCJAG00000023104	L3MBTL4 (ENSCJAG00000015716)	TMEM200C (ENSCJAG00000038374)	ENSCJAG00000085204	ENSCJAG00000081743	ENSCJAG00000015728	ZBTB14 (ENSCJAG00000048541)	AKAIN1 (ENSCJAG00000042385)	ENSCJAG00000085054	ENSCJAG00000064609	ENSCJAG00000080111	ENSCJAG00000080148	ENSCJAG00000049819
Mas night monkey	MODERN SPECIES	627	ENSANAG00000036920	VAPA (ENSANAG00000032678) #7	TXNDC2 (ENSANAG00000027352) #8	RAB31 (ENSANAG00000035727) #9	PPP4R1 (ENSANAG00000025812) #10	ENSANAG00000029139 #11	RALBP1 (ENSANAG00000028016) #12	ENSANAG00000019879	TWSG1 (ENSANAG00000029741) #13	ANKRD12 (ENSANAG00000029102) #15	NDUFV2 (ENSANAG00000021943) #17	MTCL1 (ENSANAG00000014340) #18	RAB12 (ENSANAG00000021061) #19	PTPRM (ENSANAG00000034856) #20	LRRC30 (ENSANAG00000020024) #21	LAMA1 (ENSANAG00000028013) #22	ARHGAP28 (ENSANAG00000036554) #25	L3MBTL4 (ENSANAG00000025058)	TMEM200C (ENSANAG00000023265)	ENSANAG00000035230	EPB41L3 (ENSANAG00000020372)	ENSANAG00000035293	AKAIN1 (ENSANAG00000025419)	ENSANAG00000007877	DLGAP1 (ENSANAG00000021635)	ENSANAG00000037343	TGIF1 (ENSANAG00000020401)	ENSANAG00000029379	MYL12B (ENSANAG00000028363)	ENSANAG00000019883	MYOM1 (ENSANAG00000023556)
Tarsier	MODERN SPECIES	2813																LAMA1 (ENSTSYG00000001396) #22	ARHGAP28 (ENSTSYG00000000817) #25
Strepsirrhini	ANCESTRAL SPECIES	22	ENSGT00640000091492.a	ENSGT01030000234979	ENSGT00940000154799 #7	ENSGT00940000163147 #8	ENSGT00940000155702 #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00910000147048 #11	ENSGT00940000154639 #12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00390000017580 #17	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00940000158264.a	ENSGT00530000063698.a.b	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00560000078638	ENSGT00940000156220	ENSGT00940000155230	ENSGT00940000153607.c.b	ENSGT00940000153607.c.a	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a	ENSGT00390000006950.n	ENSGT00390000018386
Lemuriformes	ANCESTRAL SPECIES	25	ENSGT00640000091492.a	ENSGT01030000234979	ENSGT00940000154799 #7	ENSGT00940000163147 #8	ENSGT00940000155702 #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00910000147048 #11	ENSGT00940000154639 #12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00390000017580 #17	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00940000158264.a	ENSGT00530000063698.a.b	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00560000078638	ENSGT00940000156220	ENSGT00940000155230	ENSGT00940000153607.c.b	ENSGT00940000153607.c.a	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a	ENSGT00390000006950.n	ENSGT00390000018386
Lemuriformes_a	ANCESTRAL SPECIES	32	ENSGT00390000005826.b	ENSGT00640000091492.a	ENSGT00940000154799 #7	ENSGT00940000163147 #8	ENSGT00940000155702 #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00910000147048 #11	ENSGT00940000154639 #12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00390000017580 #17	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00940000158264.a	ENSGT00530000063698.a.b	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00560000078638	ENSGT00940000156220	ENSGT00940000155230	ENSGT00940000153607.c.b	ENSGT00940000153607.c.a	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a	ENSGT00390000006950.n	ENSGT00390000018386
Greater bamboo lemur	MODERN SPECIES	538	RAB31 (ENSPSMG00000022758) #9	ENSPSMG00000022766	ENSPSMG00000022770	PPP4R1 (ENSPSMG00000022826) #10	ENSPSMG00000022838 #11	RALBP1 (ENSPSMG00000022869) #12	ENSPSMG00000022885	TWSG1 (ENSPSMG00000022900) #13	ANKRD12 (ENSPSMG00000022951) #15	NDUFV2 (ENSPSMG00000023001) #17	ENSPSMG00000023016	MTCL1 (ENSPSMG00000023040) #18	RAB12 (ENSPSMG00000023054) #19	PTPRM (ENSPSMG00000023340) #20	LRRC30 (ENSPSMG00000023649) #21	LAMA1 (ENSPSMG00000023703) #22	ARHGAP28 (ENSPSMG00000023792) #25	L3MBTL4 (ENSPSMG00000023858)
Coquerels sifaka	MODERN SPECIES	522																LAMA1 (ENSPCOG00000010084) #22	ARHGAP28 (ENSPCOG00000018113) #25	ENSPCOG00000021962	ENSPCOG00000026051	TMEM200C (ENSPCOG00000020142)	ENSPCOG00000014927	EPB41L3 (ENSPCOG00000007637)	ZBTB14 (ENSPCOG00000027135)	AKAIN1 (ENSPCOG00000003655)	DLGAP1 (ENSPCOG00000025011)	TGIF1 (ENSPCOG00000013428)	MYL12B (ENSPCOG00000028244)	MYL12A (ENSPCOG00000018571)	MYOM1 (ENSPCOG00000019999)	LPIN2 (ENSPCOG00000027455)	EMILIN2 (ENSPCOG00000023410)
Mouse lemur	MODERN SPECIES	10	ENSMICG00000047472	VAPA (ENSMICG00000002889) #7	ENSMICG00000002887 #8	RAB31 (ENSMICG00000002882) #9	PPP4R1 (ENSMICG00000003330) #10	RALBP1 (ENSMICG00000003325) #12	TWSG1 (ENSMICG00000036913) #13	ANKRD12 (ENSMICG00000003681) #15	NDUFV2 (ENSMICG00000038090) #17	ENSMICG00000046653	ENSMICG00000037928	MTCL1 (ENSMICG00000002310) #18	RAB12 (ENSMICG00000030661) #19	PTPRM (ENSMICG00000001715) #20	ENSMICG00000031748	LAMA1 (ENSMICG00000007685) #22	ARHGAP28 (ENSMICG00000009879) #25	L3MBTL4 (ENSMICG00000015626)	TMEM200C (ENSMICG00000047300)	EPB41L3 (ENSMICG00000015594)	ZBTB14 (ENSMICG00000034962)	AKAIN1 (ENSMICG00000034961)	DLGAP1 (ENSMICG00000001909)	TGIF1 (ENSMICG00000029611)	MYL12B (ENSMICG00000027780)	MYL12A (ENSMICG00000037011)	MYOM1 (ENSMICG00000017883)	LPIN2 (ENSMICG00000017575)	EMILIN2 (ENSMICG00000017574)	ENSMICG00000036843	SMCHD1 (ENSMICG00000012555)
Bushbaby	MODERN SPECIES	168	PAXIP1 (ENSOGAG00000000702)	HTR5A (ENSOGAG00000034672)	INSIG1 (ENSOGAG00000033732)	EN2 (ENSOGAG00000005579)	ENSOGAG00000005578	ENSOGAG00000029258	ENSOGAG00000024373	RBM33 (ENSOGAG00000032262)	ENSOGAG00000030068	RNF32 (ENSOGAG00000002082)	LMBR1 (ENSOGAG00000002085)	ENSOGAG00000033163	ENSOGAG00000028060	ENSOGAG00000028007	LRRC30 (ENSOGAG00000015239) #21	ENSOGAG00000026299 #22	ARHGAP28 (ENSOGAG00000000195) #25	ENSOGAG00000029999	L3MBTL4 (ENSOGAG00000006203)	TMEM200C (ENSOGAG00000027984)	EPB41L3 (ENSOGAG00000009686)	ZBTB14 (ENSOGAG00000009683)
Euarchontoglires_A	ANCESTRAL SPECIES	22	ENSGT00640000091492.a	ENSGT00940000154799 #7	ENSGT00940000163147 #8	ENSGT00940000155702 #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00910000147048 #11	ENSGT00940000154639 #12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00390000017580 #17	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00530000063770.d	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00940000158264.a	ENSGT00530000063698.a.b	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00560000078638	ENSGT00940000156220	ENSGT00900000143817	ENSGT00940000155230	ENSGT00940000153607.c.b	ENSGT00940000153607.c.a	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a	ENSGT00390000006950.n
Glires	ANCESTRAL SPECIES	23	ENSGT00640000091492.a	ENSGT00940000154799 #7	ENSGT00940000163147 #8	ENSGT00940000155702 #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00910000147048 #11	ENSGT00940000154639 #12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00390000017580 #17	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00530000063770.d	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00940000158264.a	ENSGT00530000063698.a.b	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00560000078638	ENSGT00940000156220	ENSGT00900000143817	ENSGT00940000155230	ENSGT00940000153607.c.b	ENSGT00940000153607.c.a	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a	ENSGT00390000006950.n
Rodentia	ANCESTRAL SPECIES	23	ENSGT00640000091492.a	ENSGT00940000154799 #7	ENSGT00940000163147 #8	ENSGT00940000155702 #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00910000147048 #11	ENSGT00940000154639 #12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00390000017580 #17	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00530000063770.d	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00940000158264.a	ENSGT00530000063698.a.b	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00560000078638	ENSGT00940000156220	ENSGT00900000143817	ENSGT00940000155230	ENSGT00940000153607.c.b	ENSGT00940000153607.c.a	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a	ENSGT00390000006950.n
Rodentia_A	ANCESTRAL SPECIES	23	ENSGT00390000005826.b	ENSGT00640000091492.a	ENSGT00940000154799 #7	ENSGT00940000163147 #8	ENSGT00940000155702 #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00940000154639 #12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00390000017580 #17	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00530000063770.d	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00940000158264.a	ENSGT00530000063698.a.b	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00560000078638	ENSGT00940000156220	ENSGT00940000155230	ENSGT00940000153607.c.b	ENSGT00940000153607.c.a	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a	ENSGT00390000006950.n	ENSGT00390000018386
Hystricomorpha	ANCESTRAL SPECIES	32	ENSGT00390000005826.b	ENSGT00640000091492.a	ENSGT00940000154799 #7	ENSGT00940000163147 #8	ENSGT00940000155702 #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00940000154639 #12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00390000017580 #17	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00530000063770.d	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00530000063698.a.b	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00560000078638	ENSGT00940000156220	ENSGT00940000155230	ENSGT00940000153607.c.b	ENSGT00940000153607.c.a	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a	ENSGT00390000006950.n	ENSGT00390000018386	ENSGT00390000016237
Hystricomorpha_a	ANCESTRAL SPECIES	26	ENSGT00390000005826.b	ENSGT00640000091492.a	ENSGT00940000154799 #7	ENSGT00940000163147 #8	ENSGT00940000155702 #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00940000154639 #12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00390000017580 #17	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00530000063770.d	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00530000063698.a.b	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00560000078638	ENSGT00940000156220	ENSGT00940000155230	ENSGT00940000153607.c.b	ENSGT00940000153607.c.a	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a	ENSGT00390000006950.n	ENSGT00390000018386	ENSGT00390000016237
Hystricomorpha_b	ANCESTRAL SPECIES	21	ENSGT00390000005826.b	ENSGT00640000091492.a	ENSGT00940000154799 #7	ENSGT00940000163147 #8	ENSGT00940000155702 #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00940000154639 #12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00390000017580 #17	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00530000063770.d	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00560000078638	ENSGT00940000156220	ENSGT00940000155230	ENSGT00940000153607.c.b	ENSGT00940000153607.c.a	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a	ENSGT00390000006950.n	ENSGT00390000018386	ENSGT00390000016237	ENSGT00950000183154.b.a.b
Long-tailed chinchilla	MODERN SPECIES	109	NAPG (ENSCLAG00000016459)	APCDD1 (ENSCLAG00000005986)	VAPA (ENSCLAG00000006573) #7	ENSCLAG00000006765 #8	RAB31 (ENSCLAG00000006992) #9	PPP4R1 (ENSCLAG00000008713) #10	RALBP1 (ENSCLAG00000008823) #12	TWSG1 (ENSCLAG00000010627) #13	ANKRD12 (ENSCLAG00000007955) #15	NDUFV2 (ENSCLAG00000008537) #17	MTCL1 (ENSCLAG00000010836) #18	RAB12 (ENSCLAG00000008683) #19	ENSCLAG00000011714	PTPRM (ENSCLAG00000012021) #20	LRRC30 (ENSCLAG00000017849) #21	LAMA1 (ENSCLAG00000016313) #22	ARHGAP28 (ENSCLAG00000009327) #25	EPB41L3 (ENSCLAG00000009191)	ZBTB14 (ENSCLAG00000015733)	AKAIN1 (ENSCLAG00000012253)	DLGAP1 (ENSCLAG00000007165)	TGIF1 (ENSCLAG00000008448)	MYL12B (ENSCLAG00000008854)	MYL12A (ENSCLAG00000011666)	MYOM1 (ENSCLAG00000009876)	LPIN2 (ENSCLAG00000016431)	EMILIN2 (ENSCLAG00000007221)	SMCHD1 (ENSCLAG00000008351)	NDC80 (ENSCLAG00000011120)	METTL4 (ENSCLAG00000011739)	ENSCLAG00000011958
Degu	MODERN SPECIES	116												MTCL1 (ENSODEG00000006449) #18	RAB12 (ENSODEG00000006414) #19	ENSODEG00000007064 #20	ENSODEG00000019415	LAMA1 (ENSODEG00000006017) #22	ENSODEG00000005712	ARHGAP28 (ENSODEG00000005750) #25	EPB41L3 (ENSODEG00000007473)	ZBTB14 (ENSODEG00000007228)	AKAIN1 (ENSODEG00000007027)	ENSODEG00000008032	DLGAP1 (ENSODEG00000006056)	TGIF1 (ENSODEG00000005910)	ENSODEG00000005356	MYL12A (ENSODEG00000006110)	MYOM1 (ENSODEG00000006774)	ENSODEG00000006584	LPIN2 (ENSODEG00000005432)	EMILIN2 (ENSODEG00000007278)	SMCHD1 (ENSODEG00000006113)
Guinea pig	MODERN SPECIES	82	NAPG (ENSCPOG00000005678)	APCDD1 (ENSCPOG00000001705)	ENSCPOG00000005484	VAPA (ENSCPOG00000006042) #7	RAB31 (ENSCPOG00000038304) #9	PPP4R1 (ENSCPOG00000001732) #10	RALBP1 (ENSCPOG00000001730) #12	TWSG1 (ENSCPOG00000025437) #13	ANKRD12 (ENSCPOG00000032722) #15	NDUFV2 (ENSCPOG00000037853) #17	MTCL1 (ENSCPOG00000013933) #18	RAB12 (ENSCPOG00000022689) #19	ENSCPOG00000025094	PTPRM (ENSCPOG00000038437) #20	ENSCPOG00000006937	LAMA1 (ENSCPOG00000013286) #22	ARHGAP28 (ENSCPOG00000013280) #25	TMEM200C (ENSCPOG00000038683)	EPB41L3 (ENSCPOG00000004412)	ZBTB14 (ENSCPOG00000025607)	ENSCPOG00000039039	DLGAP1 (ENSCPOG00000006550)	ENSCPOG00000040606	MYL12A (ENSCPOG00000037183)	MYOM1 (ENSCPOG00000012792)	LPIN2 (ENSCPOG00000023844)	EMILIN2 (ENSCPOG00000037480)	SMCHD1 (ENSCPOG00000001596)	NDC80 (ENSCPOG00000005838)	METTL4 (ENSCPOG00000005833)
Naked mole-rat female	MODERN SPECIES	9	VAPA (ENSHGLG00000032407) #7	ENSHGLG00000007585 #8	RAB31 (ENSHGLG00000042251) #9	PPP4R1 (ENSHGLG00000005129) #10	RALBP1 (ENSHGLG00000004677) #12	TWSG1 (ENSHGLG00000003871) #13	ANKRD12 (ENSHGLG00000007146) #15	ENSHGLG00000035728 #17	MTCL1 (ENSHGLG00000003546) #18	ENSHGLG00000042908	ENSHGLG00000006189 #19	ENSHGLG00000004688	PTPRM (ENSHGLG00000008461) #20	LRRC30 (ENSHGLG00000020514) #21	ENSHGLG00000042487	LAMA1 (ENSHGLG00000009921) #22	ARHGAP28 (ENSHGLG00000006823) #25	ENSHGLG00000020714	ENSHGLG00000034855	EPB41L3 (ENSHGLG00000010311)	ENSHGLG00000046379	ENSHGLG00000007011	ENSHGLG00000042885	ENSHGLG00000006262	ENSHGLG00000042452	ENSHGLG00000006158	ENSHGLG00000036933	TGIF1 (ENSHGLG00000018765)	MYL12B (ENSHGLG00000034781)	MYL12A (ENSHGLG00000040455)	MYOM1 (ENSHGLG00000014511)
Sciuridae	ANCESTRAL SPECIES	31										ENSGT00940000154742.a #15	ENSGT00390000017580 #17	ENSGT00950000182982.A #18	ENSGT00940000159325.n #19	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00940000158264.a	ENSGT00530000063698.a.b	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00560000078638	ENSGT00940000156220	ENSGT00940000155230	ENSGT00940000153607.c.b	ENSGT00940000153607.c.a	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a	ENSGT00390000006950.n	ENSGT00390000018386
Marmotini	ANCESTRAL SPECIES	31										ENSGT00940000154742.a #15	ENSGT00390000017580 #17	ENSGT00950000182982.A #18	ENSGT00940000159325.n #19	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00940000158264.a	ENSGT00530000063698.a.b	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00940000162721	ENSGT00560000078638	ENSGT00940000156220	ENSGT00940000155230	ENSGT00940000153607.c.b	ENSGT00940000153607.c.a	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a	ENSGT00390000006950.n
Marmotini_b	ANCESTRAL SPECIES	260										ENSGT00940000154742.a #15	ENSGT00390000017580 #17	ENSGT00950000182982.A #18	ENSGT00940000159325.n #19	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25
Arctic ground squirrel	MODERN SPECIES	400												ENSUPAG00010019536	ENSUPAG00010019530	PTPRM (ENSUPAG00010019306) #20	LRRC30 (ENSUPAG00010019298) #21	LAMA1 (ENSUPAG00010019246) #22	ARHGAP28 (ENSUPAG00010019203) #25	ENSUPAG00010019199
Squirrel	MODERN SPECIES	270									ENSSTOG00000029741	ANKRD12 (ENSSTOG00000019525) #15	NDUFV2 (ENSSTOG00000016259) #17	MTCL1 (ENSSTOG00000028712) #18	RAB12 (ENSSTOG00000025122) #19	PTPRM (ENSSTOG00000000908) #20	LRRC30 (ENSSTOG00000025260) #21	LAMA1 (ENSSTOG00000008515) #22	ARHGAP28 (ENSSTOG00000010858) #25
Alpin marmot	MODERN SPECIES	10						ANKRD12 (ENSMMMG00000013824) #15	NDUFV2 (ENSMMMG00000013810) #17	ENSMMMG00000013807	MTCL1 (ENSMMMG00000013768) #18	ENSMMMG00000013764	ENSMMMG00000013760	ENSMMMG00000013713 #19	ENSMMMG00000013697	PTPRM (ENSMMMG00000013579) #20	LRRC30 (ENSMMMG00000013552) #21	LAMA1 (ENSMMMG00000013463) #22	ARHGAP28 (ENSMMMG00000013408) #25	L3MBTL4 (ENSMMMG00000013328)	EPB41L3 (ENSMMMG00000012882)	ZBTB14 (ENSMMMG00000012859)	ENSMMMG00000012857	AKAIN1 (ENSMMMG00000012852)	DLGAP1 (ENSMMMG00000012118)	TGIF1 (ENSMMMG00000012104)	MYL12B (ENSMMMG00000012089)	MYL12A (ENSMMMG00000012076)	MYOM1 (ENSMMMG00000011990)	LPIN2 (ENSMMMG00000011908)	EMILIN2 (ENSMMMG00000011901)	SMCHD1 (ENSMMMG00000010857)	NDC80 (ENSMMMG00000010813)
Eurasian red squirrel	MODERN SPECIES	4	ENSSVLG00005016925	ENSSVLG00005017042	ENSSVLG00005017090	ENSSVLG00005017204	ENSSVLG00005017371	ENSSVLG00005017435	ENSSVLG00005017484	ENSSVLG00005017594	ENSSVLG00005017629	ENSSVLG00005017681	ENSSVLG00005017727 #24	ENSSVLG00005017768	PTPRM (ENSSVLG00005017846) #20	ENSSVLG00005017979	LRRC30 (ENSSVLG00005018021) #21	ENSSVLG00005018044 #22	ARHGAP28 (ENSSVLG00005018157) #25	L3MBTL4 (ENSSVLG00005018713)	TMEM200C (ENSSVLG00005018871)	EPB41L3 (ENSSVLG00005018950)	ZBTB14 (ENSSVLG00005019264)	ENSSVLG00005019313	AKAIN1 (ENSSVLG00005019389)	ENSSVLG00005019491	DLGAP1 (ENSSVLG00005019856)	TGIF1 (ENSSVLG00005020396)	MYL12B (ENSSVLG00005020487)	MYL12A (ENSSVLG00005020518)	MYOM1 (ENSSVLG00005020656)	LPIN2 (ENSSVLG00005021537)	EMILIN2 (ENSSVLG00005021595)
Rodentia_B	ANCESTRAL SPECIES	27	ENSGT00640000091492.a	ENSGT00940000154799 #7	ENSGT00940000163147 #8	ENSGT00940000155702 #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00910000147048 #11	ENSGT00940000154639 #12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00390000017580 #17	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00530000063770.d	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00940000158264.a	ENSGT00530000063698.a.b	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00560000078638	ENSGT00940000156220	ENSGT00900000143817	ENSGT00940000155230	ENSGT00940000153607.c.b	ENSGT00940000153607.c.a	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a	ENSGT00390000006950.n
Kangaroo rat	MODERN SPECIES	419	Psmg2 (ENSDORG00000010464)	ENSDORG00000005464	ENSDORG00000027729 ##24	Seh1l (ENSDORG00000005502)	ENSDORG00000029330	Ldlrad4 (ENSDORG00000023778)	Fam210a (ENSDORG00000027548)	Rnmt (ENSDORG00000016722)	Mc5r (ENSDORG00000006765)	ENSDORG00000028288	Mtcl1 (ENSDORG00000009301) #18	Rab12 (ENSDORG00000008920) #19	ENSDORG00000016414	Ptprm (ENSDORG00000015704) #20	ENSDORG00000027440	Lama1 (ENSDORG00000010869) #22	Arhgap28 (ENSDORG00000001783) #25	L3mbtl4 (ENSDORG00000013048)	Epb41l3 (ENSDORG00000014615)	Zbtb14 (ENSDORG00000026644)	Akain1 (ENSDORG00000024259)	Dlgap1 (ENSDORG00000012414)	Tgif1 (ENSDORG00000026503)	Myl12b (ENSDORG00000030160)	ENSDORG00000029581	Myom1 (ENSDORG00000009806)	Lpin2 (ENSDORG00000006891)	Emilin2 (ENSDORG00000028553)	Smchd1 (ENSDORG00000004508)	Ndc80 (ENSDORG00000000268)	Mettl4 (ENSDORG00000005216)
Myomorpha	ANCESTRAL SPECIES	45											ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00530000063770.d	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00940000158264.a	ENSGT00530000063698.a.b	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00560000078638	ENSGT00940000156220	ENSGT00900000143817	ENSGT00940000155230	ENSGT00940000153607.c.b	ENSGT00940000153607.c.a	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a	ENSGT00390000006950.n
Muroidea	ANCESTRAL SPECIES	46	ENSGT00940000163147 #8	ENSGT00940000155702 #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00910000147048 #11	ENSGT00940000154639 #12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00390000017580 #17	ENSGT00390000016717	ENSGT00950000182970.B	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00530000063770.d	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00940000158264.a	ENSGT00530000063698.a.b	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00560000078638	ENSGT00940000156220	ENSGT00900000143817	ENSGT00940000155230	ENSGT00940000153607.c.b	ENSGT00940000153607.c.a	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a	ENSGT00390000006950.n
Muroidea_A	ANCESTRAL SPECIES	19	ENSGT00940000163147 #8	ENSGT00940000155702 #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00910000147048 #11	ENSGT00940000154639 #12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00390000017580 #17	ENSGT00390000016717	ENSGT00950000182970.B	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00530000063770.d	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00940000158264.a	ENSGT00530000063698.a.b	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00560000078638	ENSGT00940000156220	ENSGT00900000143817	ENSGT00940000155230	ENSGT00940000153607.c.b	ENSGT00940000153607.c.a	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a	ENSGT00390000006950.n
Cricetidae	ANCESTRAL SPECIES	19	ENSGT00940000154799 #7	ENSGT00940000155702 #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00910000147048 #11	ENSGT00940000154639 #12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00390000017580 #17	ENSGT00390000016717	ENSGT00950000182970.B	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00530000063770.d	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00940000158264.a	ENSGT00530000063698.a.b	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00560000078638	ENSGT00940000156220	ENSGT00900000143817	ENSGT00940000155230	ENSGT00940000153607.c.b	ENSGT00940000153607.c.a	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a	ENSGT00390000006950.n
Cricetidae_B	ANCESTRAL SPECIES	62											ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00530000063770.d	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00940000158264.a	ENSGT00530000063698.a.b	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00560000078638	ENSGT00940000156220	ENSGT00900000143817	ENSGT00940000155230	ENSGT00940000153607.c.b	ENSGT00940000153607.c.a	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a	ENSGT00390000006950.n
Northern American deer mouse	MODERN SPECIES	4	Slco4c1 (ENSPEMG00000020395)	ENSPEMG00000030212	ENSPEMG00000017201	ENSPEMG00000014680	Pam (ENSPEMG00000008719)	Gin1 (ENSPEMG00000028100)	Ppip5k2 (ENSPEMG00000010567)	Macir (ENSPEMG00000027934)	Pdzph1 (ENSPEMG00000024409)	Nudt12 (ENSPEMG00000020321)	Mtcl1 (ENSPEMG00000021910) #18	Rab12 (ENSPEMG00000021032) #19	Themis3 (ENSPEMG00000021070)	Ptprm (ENSPEMG00000024155) #20	Lrrc30 (ENSPEMG00000003079) #21	Lama1 (ENSPEMG00000021586) #22	Arhgap28 (ENSPEMG00000020350) #25	L3mbtl4 (ENSPEMG00000001103)	Tmem200c (ENSPEMG00000026206)	Epb41l3 (ENSPEMG00000009758)	Zbtb14 (ENSPEMG00000016649)	Akain1 (ENSPEMG00000024985)	ENSPEMG00000025947	ENSPEMG00000027160	Dlgap1 (ENSPEMG00000020719)	ENSPEMG00000031236	ENSPEMG00000026379	Myl12b (ENSPEMG00000022144)	Myl12a (ENSPEMG00000021243)	Myom1 (ENSPEMG00000010271)	Lpin2 (ENSPEMG00000016819)
Prairie vole	MODERN SPECIES	103	ENSMOCG00000017885	Dlgap1 (ENSMOCG00000003521)	Akain1 (ENSMOCG00000012989)	Zbtb14 (ENSMOCG00000010611)	ENSMOCG00000003079	Epb41l3 (ENSMOCG00000000728)	Tmem200c (ENSMOCG00000011720)	ENSMOCG00000020294	ENSMOCG00000016924	Arhgap28 (ENSMOCG00000002311) #25	Mtcl1 (ENSMOCG00000007848) #18	Rab12 (ENSMOCG00000000452) #19	Themis3 (ENSMOCG00000009480)	Ptprm (ENSMOCG00000001682) #20	Lrrc30 (ENSMOCG00000022722) #21	Lama1 (ENSMOCG00000019094) #22
Cricetinae	ANCESTRAL SPECIES	3	ENSGT00390000014003	ENSGT00940000154799 #7	ENSGT00940000155702 #9	ENSGT00950000183066.a.b.a.a.o #10	ENSGT00940000154639 #12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00390000017580 #17	ENSGT00390000016717	ENSGT00950000182970.B	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00530000063770.d	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00940000158264.a	ENSGT00530000063698.a.b	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00560000078638	ENSGT00940000156220	ENSGT00940000155230	ENSGT00940000153607.c.b	ENSGT00940000153607.c.a	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a	ENSGT00390000006950.n	ENSGT00390000018386
Chinese hamster chok1gshd	MODERN SPECIES	1	Vapa (ENSCGRG00001011310) #7	Rab31 (ENSCGRG00001005767) #9	Ppp4r1 (ENSCGRG00001004272) #10	Ralbp1 (ENSCGRG00001004009) #12	Twsg1 (ENSCGRG00001004674) #13	Ankrd12 (ENSCGRG00001005010) #15	Ndufv2 (ENSCGRG00001011100) #17	Washc1 (ENSCGRG00001004739)	Ddx11 (ENSCGRG00001004560)	ENSCGRG00001010133	Mtcl1 (ENSCGRG00001004149) #18	Rab12 (ENSCGRG00001006958) #19	Themis3 (ENSCGRG00001011260)	Ptprm (ENSCGRG00001011796) #20	Lrrc30 (ENSCGRG00001010374) #21	Lama1 (ENSCGRG00001011536) #22	Arhgap28 (ENSCGRG00001005575) #25	L3mbtl4 (ENSCGRG00001011431)	Tmem200c (ENSCGRG00001010878)	Epb41l3 (ENSCGRG00001007547)	Zbtb14 (ENSCGRG00001011456)	Akain1 (ENSCGRG00001011277)	Dlgap1 (ENSCGRG00001010521)	Tgif1 (ENSCGRG00001007018)	Myl12b (ENSCGRG00001011388)	Myl12a (ENSCGRG00001011344)	Myom1 (ENSCGRG00001012204)	Lpin2 (ENSCGRG00001012322)	Emilin2 (ENSCGRG00001005288)	Smchd1 (ENSCGRG00001011971)	Ndc80 (ENSCGRG00001011888)
Golden Hamster	MODERN SPECIES	747										Mtcl1 (ENSMAUG00000014436) #18	Rab12 (ENSMAUG00000008371) #19	Themis3 (ENSMAUG00000011734)	ENSMAUG00000001486 #20	ENSMAUG00000013283 #20	Lrrc30 (ENSMAUG00000002146) #21	Lama1 (ENSMAUG00000000452) #22	Arhgap28 (ENSMAUG00000016331) #25	L3mbtl4 (ENSMAUG00000001573)	Tmem200c (ENSMAUG00000014507)	ENSMAUG00000019846	Epb41l3 (ENSMAUG00000011827)	Zbtb14 (ENSMAUG00000014139)	Akain1 (ENSMAUG00000020687)	Dlgap1 (ENSMAUG00000019471)	ENSMAUG00000018223	Myl12a (ENSMAUG00000018600)	Myom1 (ENSMAUG00000012755)	Lpin2 (ENSMAUG00000009579)	Emilin2 (ENSMAUG00000008934)	Smchd1 (ENSMAUG00000020732)	ENSMAUG00000009467
Murinae	ANCESTRAL SPECIES	9	ENSGT00940000154799 #7	ENSGT00940000163147 #8	ENSGT00940000155702 #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00940000154639 #12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00390000017580 #17	ENSGT00390000016717	ENSGT00950000182970.B	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00530000063770.d	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00940000158264.a	ENSGT00530000063698.a.b	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00560000078638	ENSGT00940000156220	ENSGT00940000155230	ENSGT00940000153607.c.b	ENSGT00940000153607.c.a	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a	ENSGT00390000006950.n	ENSGT00390000018386
Mus	ANCESTRAL SPECIES	16	ENSGT00940000154799 #7	ENSGT00940000163147 #8	ENSGT00940000155702 #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00940000154639 #12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00390000017580 #17	ENSGT00390000016717	ENSGT00950000182970.B	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00530000063770.d	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00940000158264.a	ENSGT00530000063698.a.b	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00560000078638	ENSGT00940000156220	ENSGT00940000155230	ENSGT00940000153607.c.b	ENSGT00940000153607.c.a	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a	ENSGT00390000006950.n	ENSGT00390000018386
Mus_A	ANCESTRAL SPECIES	10	ENSGT00940000154799 #7	ENSGT00940000163147 #8	ENSGT00940000155702 #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00940000154639 #12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00390000017580 #17	ENSGT00390000016717	ENSGT00950000182970.B	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00530000063770.d	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00940000158264.a	ENSGT00530000063698.a.b	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00560000078638	ENSGT00940000156220	ENSGT00940000155230	ENSGT00940000153607.c.b	ENSGT00940000153607.c.a	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a	ENSGT00390000006950.n	ENSGT00390000018386
Mus_B	ANCESTRAL SPECIES	9	ENSGT00940000154799 #7	ENSGT00940000163147 #8	ENSGT00940000155702 #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00940000154639 #12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00390000017580 #17	ENSGT00390000016717	ENSGT00950000182970.B	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00530000063770.d	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00940000158264.a	ENSGT00530000063698.a.b	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00560000078638	ENSGT00940000156220	ENSGT00940000155230	ENSGT00940000153607.c.b	ENSGT00940000153607.c.a	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a	ENSGT00390000006950.n	ENSGT00390000018386
Mouse	MODERN SPECIES	8	Vapa (ENSMUSG00000024091) #7	Txndc2 (ENSMUSG00000050612) #8	Rab31 (ENSMUSG00000056515) #9	Ppp4r1 (ENSMUSG00000061950) #10	Ralbp1 (ENSMUSG00000024096) #12	Twsg1 (ENSMUSG00000024098) #13	Ankrd12 (ENSMUSG00000034647) #15	Ndufv2 (ENSMUSG00000024099) #17	Washc1 (ENSMUSG00000024101)	Ddx11 (ENSMUSG00000035842)	Mtcl1 (ENSMUSG00000052105) #18	Rab12 (ENSMUSG00000023460) #19	Themis3 (ENSMUSG00000024105)	Ptprm (ENSMUSG00000033278) #20	Lrrc30 (ENSMUSG00000073375) #21	Lama1 (ENSMUSG00000032796) #22	Arhgap28 (ENSMUSG00000024043) #25	L3mbtl4 (ENSMUSG00000041565)	Tmem200c (ENSMUSG00000095407)	Epb41l3 (ENSMUSG00000024044)	Zbtb14 (ENSMUSG00000049672)	Akain1 (ENSMUSG00000091636)	Dlgap1 (ENSMUSG00000003279)	Tgif1 (ENSMUSG00000047407)	Myl12b (ENSMUSG00000034868)	Gm49909 (ENSMUSG00000117098)	Myl12a (ENSMUSG00000024048)	Myom1 (ENSMUSG00000024049)	Lpin2 (ENSMUSG00000024052)	Emilin2 (ENSMUSG00000024053)	Smchd1 (ENSMUSG00000024054)
Mus_C	ANCESTRAL SPECIES	9	ENSGT00940000154799 #7	ENSGT00940000163147 #8	ENSGT00940000155702 #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00940000154639 #12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00390000017580 #17	ENSGT00390000016717	ENSGT00950000182970.B	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00530000063770.d	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00940000158264.a	ENSGT00530000063698.a.b	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00560000078638	ENSGT00940000156220	ENSGT00940000155230	ENSGT00940000153607.c.b	ENSGT00940000153607.c.a	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a	ENSGT00390000006950.n	ENSGT00390000018386
Steppe mouse	MODERN SPECIES	3371	Rab31 (ENSMSIG00000030575) #9	Ppp4r1 (ENSMSIG00000030579) #10	Ralbp1 (ENSMSIG00000030582) #12	Twsg1 (ENSMSIG00000030587) #13	Ankrd12 (ENSMSIG00000030589) #15	Ndufv2 (ENSMSIG00000030594) #17	Washc1 (ENSMSIG00000000191)	Ddx11 (ENSMSIG00000000267)	ENSMSIG00000000501	ENSMSIG00000000510	Mtcl1 (ENSMSIG00000000559) #18	Rab12 (ENSMSIG00000000750) #19	Themis3 (ENSMSIG00000000792)	Ptprm (ENSMSIG00000000887) #20	Lrrc30 (ENSMSIG00000001839) #21	Lama1 (ENSMSIG00000001864) #22	Arhgap28 (ENSMSIG00000002010) #25	L3mbtl4 (ENSMSIG00000002227)	Tmem200c (ENSMSIG00000002319)	ENSMSIG00000002374	Zbtb14 (ENSMSIG00000002900)	ENSMSIG00000002940	Akain1 (ENSMSIG00000002956)	Dlgap1 (ENSMSIG00000003025)	ENSMSIG00000004094	ENSMSIG00000004136	Tgif1 (ENSMSIG00000004165)	ENSMSIG00000004215	Myl12b (ENSMSIG00000004224)	ENSMSIG00000004252	Myom1 (ENSMSIG00000004331)
spretus	MODERN SPECIES	8	Vapa (MGP_SPRETEiJ_G0022739) #7	MGP_SPRETEiJ_G0022740 #8	Rab31 (MGP_SPRETEiJ_G0022741) #9	Ppp4r1 (MGP_SPRETEiJ_G0022742) #10	Ralbp1 (MGP_SPRETEiJ_G0022743) #12	Twsg1 (MGP_SPRETEiJ_G0022744) #13	Ankrd12 (MGP_SPRETEiJ_G0022745) #15	Ndufv2 (MGP_SPRETEiJ_G0022746) #17	Washc1 (MGP_SPRETEiJ_G0022747)	Ddx11 (MGP_SPRETEiJ_G0022748)	Mtcl1 (MGP_SPRETEiJ_G0022749) #18	Rab12 (MGP_SPRETEiJ_G0022750) #19	Themis3 (MGP_SPRETEiJ_G0022751)	MGP_SPRETEiJ_G0022752 #20	Lrrc30 (MGP_SPRETEiJ_G0022753) #21	Lama1 (MGP_SPRETEiJ_G0022754) #22	Arhgap28 (MGP_SPRETEiJ_G0022755) #25	L3mbtl4 (MGP_SPRETEiJ_G0022756)	Tmem200c (MGP_SPRETEiJ_G0022757)	MGP_SPRETEiJ_G0022758	Akain1 (MGP_SPRETEiJ_G0022759)	Dlgap1 (MGP_SPRETEiJ_G0022760)	Tgif1 (MGP_SPRETEiJ_G0022761)	MGP_SPRETEiJ_G0022762	Myl12b (MGP_SPRETEiJ_G0022763)	Myl12a (MGP_SPRETEiJ_G0022764)	Myom1 (MGP_SPRETEiJ_G0022765)	Lpin2 (MGP_SPRETEiJ_G0022766)	Emilin2 (MGP_SPRETEiJ_G0022767)	Smchd1 (MGP_SPRETEiJ_G0022768)	MGP_SPRETEiJ_G0022769
Ryukyu mouse	MODERN SPECIES	8	Vapa (MGP_CAROLIEiJ_G0021828) #7	MGP_CAROLIEiJ_G0021829 #8	Rab31 (MGP_CAROLIEiJ_G0021830) #9	Ppp4r1 (MGP_CAROLIEiJ_G0021831) #10	Ralbp1 (MGP_CAROLIEiJ_G0021832) #12	Twsg1 (MGP_CAROLIEiJ_G0021833) #13	Ankrd12 (MGP_CAROLIEiJ_G0021834) #15	Ndufv2 (MGP_CAROLIEiJ_G0021835) #17	Washc1 (MGP_CAROLIEiJ_G0021836)	Ddx11 (MGP_CAROLIEiJ_G0021837)	Mtcl1 (MGP_CAROLIEiJ_G0021838) #18	Rab12 (MGP_CAROLIEiJ_G0021839) #19	Themis3 (MGP_CAROLIEiJ_G0021840)	Ptprm (MGP_CAROLIEiJ_G0021841) #20	Lrrc30 (MGP_CAROLIEiJ_G0021842) #21	Lama1 (MGP_CAROLIEiJ_G0021843) #22	Arhgap28 (MGP_CAROLIEiJ_G0021844) #25	L3mbtl4 (MGP_CAROLIEiJ_G0021845)	Tmem200c (MGP_CAROLIEiJ_G0021846)	MGP_CAROLIEiJ_G0021847	Zbtb14 (MGP_CAROLIEiJ_G0021848)	Akain1 (MGP_CAROLIEiJ_G0021849)	Dlgap1 (MGP_CAROLIEiJ_G0021850)	Tgif1 (MGP_CAROLIEiJ_G0021851)	Myl12b (MGP_CAROLIEiJ_G0021852)	Myl12a (MGP_CAROLIEiJ_G0021853)	Myom1 (MGP_CAROLIEiJ_G0021854)	Lpin2 (MGP_CAROLIEiJ_G0021855)	Emilin2 (MGP_CAROLIEiJ_G0021856)	MGP_CAROLIEiJ_G0021857	MGP_CAROLIEiJ_G0021858
Shrew mouse	MODERN SPECIES	9	Tmem232 (MGP_PahariEiJ_G0020815)	Vapa (MGP_PahariEiJ_G0020816) #7	Rab31 (MGP_PahariEiJ_G0020817) #9	Ppp4r1 (MGP_PahariEiJ_G0020818) #10	Ralbp1 (MGP_PahariEiJ_G0020819) #12	Twsg1 (MGP_PahariEiJ_G0020820) #13	Ankrd12 (MGP_PahariEiJ_G0020821) #15	Ndufv2 (MGP_PahariEiJ_G0020822) #17	Washc1 (MGP_PahariEiJ_G0020823)	Ddx11 (MGP_PahariEiJ_G0020824)	Mtcl1 (MGP_PahariEiJ_G0020825) #18	Rab12 (MGP_PahariEiJ_G0020826) #19	Themis3 (MGP_PahariEiJ_G0020827)	Ptprm (MGP_PahariEiJ_G0020828) #20	Lrrc30 (MGP_PahariEiJ_G0020829) #21	Lama1 (MGP_PahariEiJ_G0020830) #22	Arhgap28 (MGP_PahariEiJ_G0020831) #25	L3mbtl4 (MGP_PahariEiJ_G0020832)	Tmem200c (MGP_PahariEiJ_G0020833)	MGP_PahariEiJ_G0020834	Zbtb14 (MGP_PahariEiJ_G0020835)	Akain1 (MGP_PahariEiJ_G0020836)	Dlgap1 (MGP_PahariEiJ_G0020837)	Tgif1 (MGP_PahariEiJ_G0020838)	Myl12b (MGP_PahariEiJ_G0020839)	Myl12a (MGP_PahariEiJ_G0020840)	Myom1 (MGP_PahariEiJ_G0020841)	Lpin2 (MGP_PahariEiJ_G0020842)	Emilin2 (MGP_PahariEiJ_G0020843)	Smchd1 (MGP_PahariEiJ_G0020844)	MGP_PahariEiJ_G0020845
Rat	MODERN SPECIES	19	Ddx11 (ENSRNOG00000051528)	AABR07068650.1 (ENSRNOG00000031795)	LOC689520 (ENSRNOG00000065168)	ENSRNOG00000068893	LOC102555239 (ENSRNOG00000064088)	ENSRNOG00000071060	Washc1-ps2 (ENSRNOG00000064608)	ENSRNOG00000066428	ENSRNOG00000065763	Mtcl1 (ENSRNOG00000025527) #18	Rab12 (ENSRNOG00000019295) #19	AABR07039169.1 (ENSRNOG00000051198)	Themis3 (ENSRNOG00000012115)	Ptprm (ENSRNOG00000011700) #20	Lrrc30 (ENSRNOG00000030389) #21	Lama1 (ENSRNOG00000017237) #22	Arhgap28 (ENSRNOG00000017065) #25	Rps26-ps4 (ENSRNOG00000056280)	L3mbtl4 (ENSRNOG00000025273)	Tmem200c (ENSRNOG00000049880)	Epb41l3 (ENSRNOG00000016724)	Zfp161 (ENSRNOG00000016719)	Akain1 (ENSRNOG00000063808)	ENSRNOG00000069381	Dlgap1 (ENSRNOG00000016196)	Tgif1 (ENSRNOG00000015906)	Myl12b (ENSRNOG00000015278)	Myom1 (ENSRNOG00000057701)	Lpin2 (ENSRNOG00000014876)	Emilin2 (ENSRNOG00000014837)	Smchd1 (ENSRNOG00000014319)
Upper Galilee mountains blind mole rat	MODERN SPECIES	894	ENSNGAG00000017911 #10	ENSNGAG00000012168 #12	ENSNGAG00000021003	Twsg1 (ENSNGAG00000019546) #13	ENSNGAG00000018198	ENSNGAG00000014158 #15	ENSNGAG00000021873 #15	ENSNGAG00000018779 #17	Washc1 (ENSNGAG00000022286)	Ddx11 (ENSNGAG00000016888)	Mtcl1 (ENSNGAG00000022416) #18	ENSNGAG00000024103 #19	Themis3 (ENSNGAG00000021267)	Ptprm (ENSNGAG00000007608) #20	Lrrc30 (ENSNGAG00000009990) #21	Lama1 (ENSNGAG00000010298) #22	Arhgap28 (ENSNGAG00000018728) #25	ENSNGAG00000006931	L3mbtl4 (ENSNGAG00000014474)	Tmem200c (ENSNGAG00000010989)	ENSNGAG00000020627	ENSNGAG00000019412	Zbtb14 (ENSNGAG00000017654)	Akain1 (ENSNGAG00000014300)	Dlgap1 (ENSNGAG00000003251)	ENSNGAG00000017055	Myl12b (ENSNGAG00000015436)	Myl12a (ENSNGAG00000016011)	Myom1 (ENSNGAG00000024163)	Lpin2 (ENSNGAG00000023719)	ENSNGAG00000012685
Lesser Egyptian jerboa	MODERN SPECIES	93												Mtcl1 (ENSJJAG00000022910) #18	Rab12 (ENSJJAG00000019064) #19	Ptprm (ENSJJAG00000022917) #20	Lrrc30 (ENSJJAG00000014844) #21	Lama1 (ENSJJAG00000024150) #22	Arhgap28 (ENSJJAG00000017884) #25	L3mbtl4 (ENSJJAG00000011127)	Tmem200c (ENSJJAG00000007189)	Epb41l3 (ENSJJAG00000017223)	Zbtb14 (ENSJJAG00000015998)	Akain1 (ENSJJAG00000014944)	Dlgap1 (ENSJJAG00000012760)	Tgif1 (ENSJJAG00000009770)	ENSJJAG00000019202	ENSJJAG00000019155	ENSJJAG00000018032	Myom1 (ENSJJAG00000016402)	Lpin2 (ENSJJAG00000013799)	Emilin2 (ENSJJAG00000012081)	Smchd1 (ENSJJAG00000003619)
Lagomorpha	ANCESTRAL SPECIES	41			ENSGT01030000234979	ENSGT00940000154799 #7	ENSGT00940000163147 #8	ENSGT00940000155702 #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00940000154639 #12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00390000017580 #17	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00940000158264.a	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00940000162721	ENSGT00940000164798	ENSGT00560000078638	ENSGT00940000156220	ENSGT00940000155230	ENSGT00940000153607.c.b	ENSGT00940000153607.c.a	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a	ENSGT00390000006950.n.p
Rabbit	MODERN SPECIES	20	ENSOCUG00000039533	VAPA (ENSOCUG00000008615) #7	ENSOCUG00000008611 #8	PPP4R1 (ENSOCUG00000005021) #10	RALBP1 (ENSOCUG00000010172) #12	TWSG1 (ENSOCUG00000017549) #13	ANKRD12 (ENSOCUG00000025998) #15	NDUFV2 (ENSOCUG00000009899) #17	ENSOCUG00000026903	MTCL1 (ENSOCUG00000013230) #18	RAB12 (ENSOCUG00000025429) #19	ENSOCUG00000020940	PTPRM (ENSOCUG00000016125) #20	ENSOCUG00000032560	LRRC30 (ENSOCUG00000001704) #21	LAMA1 (ENSOCUG00000009424) #22	ARHGAP28 (ENSOCUG00000003323) #25	L3MBTL4 (ENSOCUG00000013013)	ENSOCUG00000037625	TMEM200C (ENSOCUG00000024350)	ENSOCUG00000032244	EPB41L3 (ENSOCUG00000021196)	ZBTB14 (ENSOCUG00000004131)	ENSOCUG00000023402	AKAIN1 (ENSOCUG00000035231)	DLGAP1 (ENSOCUG00000013763)	ENSOCUG00000029174	ENSOCUG00000037037	TGIF1 (ENSOCUG00000013752)	ENSOCUG00000021304	MYOM1 (ENSOCUG00000008571)
Pika	MODERN SPECIES	5336															ENSOPRG00000002801 #21	ENSOPRG00000002706 #22
Tree shrew	MODERN SPECIES	5784															ENSTBEG00000004138	LAMA1 (ENSTBEG00000003034) #22	ARHGAP28 (ENSTBEG00000002678) #25
Laurasiatheria	ANCESTRAL SPECIES	23	ENSGT01030000234979	ENSGT01030000234767	ENSGT00940000154799 #7	ENSGT00940000163147 #8	ENSGT00940000155702 #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00910000147048 #11	ENSGT00940000154639 #12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00390000017580 #17	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00940000158264.a	ENSGT00530000063698.a.b	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00560000078638	ENSGT00940000156220	ENSGT00900000143817	ENSGT00940000155230	ENSGT00940000153607.c.b	ENSGT00940000153607.c.a	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a	ENSGT00390000006950.n
Laurasiatheria_a	ANCESTRAL SPECIES	13	ENSGT01030000234979	ENSGT01030000234767	ENSGT00940000154799 #7	ENSGT00940000163147 #8	ENSGT00940000155702 #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00910000147048 #11	ENSGT00940000154639 #12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00390000017580 #17	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00940000158264.a	ENSGT00530000063698.a.b	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00560000078638	ENSGT00940000156220	ENSGT00900000143817	ENSGT00940000155230	ENSGT00940000153607.c.b	ENSGT00940000153607.c.a.d	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a	ENSGT00390000006950.n
Artiodactyla	ANCESTRAL SPECIES	17	ENSGT00390000005826.b	ENSGT00640000091492.a	ENSGT01030000234979	ENSGT00940000154799 #7	ENSGT00940000163147 #8	ENSGT00940000155702 #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00940000154639 #12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00390000017580 #17	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00940000158264.a	ENSGT00530000063698.a.b	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00560000078638	ENSGT00940000156220	ENSGT00900000143817	ENSGT00940000155230	ENSGT00940000153607.c.b	ENSGT00940000153607.c.a.d	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a	ENSGT00390000006950.n
Artiodactyla_a	ANCESTRAL SPECIES	17	ENSGT00390000005826.b	ENSGT00640000091492.a	ENSGT01030000234979	ENSGT00940000154799 #7	ENSGT00940000163147 #8	ENSGT00940000155702 #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00940000154639 #12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00390000017580 #17	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00940000158264.a	ENSGT00530000063698.a.b	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00560000078638	ENSGT00940000156220	ENSGT00900000143817	ENSGT00940000155230	ENSGT00940000153607.c.b	ENSGT00940000153607.c.a.d	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a	ENSGT00390000006950.n
Artiodactyla_b	ANCESTRAL SPECIES	10	ENSGT00390000005826.b	ENSGT00640000091492.a	ENSGT01030000234979	ENSGT00940000154799 #7	ENSGT00940000163147 #8	ENSGT00940000155702 #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00940000154639 #12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00390000017580 #17	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00940000158264.a	ENSGT00530000063698.a.b	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00560000078638	ENSGT00940000156220	ENSGT00900000143817	ENSGT00940000155230	ENSGT00940000153607.c.b	ENSGT00940000153607.c.a.d	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a	ENSGT00390000006950.n
Cetacea	ANCESTRAL SPECIES	11	ENSGT00390000005826.b	ENSGT00640000091492.a	ENSGT00940000154799 #7	ENSGT00940000163147 #8	ENSGT00940000155702 #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00940000154639 #12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00390000017580.bb #17	ENSGT00950000182982.A #18	ENSGT00390000016972.a.a.b.b.a	ENSGT00940000159325 #19	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00940000158264.a	ENSGT00530000063698.a.b	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT01010000224919	ENSGT00940000156220	ENSGT00940000155230	ENSGT00940000153607.c.b	ENSGT00940000153607.c.a.d	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a	ENSGT00390000006950.n	ENSGT00390000018386
Odontoceti	ANCESTRAL SPECIES	10	ENSGT00390000005826.b	ENSGT00640000091492.a	ENSGT00940000154799 #7	ENSGT00940000163147 #8	ENSGT00940000155702 #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00940000154639 #12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00390000017580.bb #17	ENSGT00950000182982.A #18	ENSGT00390000016972.a.a.b.b.a	ENSGT00940000159325 #19	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00940000158264.a	ENSGT00530000063698.a.b	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00940000162721	ENSGT00560000078638	ENSGT00550000074618.a.b.`b	ENSGT01010000224919	ENSGT00940000156220	ENSGT00940000155230	ENSGT00940000153607.c.b	ENSGT00940000153607.c.a.d	ENSGT00940000154982	ENSGT00940000156313
Odontoceti_a	ANCESTRAL SPECIES	9	ENSGT00940000154456.v	ENSGT00390000005826.b	ENSGT00640000091492.a	ENSGT00940000154799 #7	ENSGT00940000163147 #8	ENSGT00940000155702 #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00940000154639 #12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00390000017580.bb #17	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00940000155020 #20	ENSGT00940000164030	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00940000158264.a	ENSGT00530000063698.a.b	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00940000162721	ENSGT00560000078638	ENSGT01010000224919	ENSGT00940000156220	ENSGT00940000155230	ENSGT00940000153607.c.b	ENSGT00940000153607.c.a.d	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a
Odontoceti_b	ANCESTRAL SPECIES	10	ENSGT00640000091492.a	ENSGT00940000154799 #7	ENSGT00940000163147 #8	ENSGT00940000155702 #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00940000154639 #12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00390000017580.bb #17	ENSGT00390000016972.a.a.b.b.a	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT01090000260119.g	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00940000158264.a	ENSGT00530000063698.a.b	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00940000162721	ENSGT00560000078638	ENSGT01010000224919	ENSGT00940000156220	ENSGT00940000155230	ENSGT00940000153607.c.a.d	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a	ENSGT00390000006950.n
Monodontidae	ANCESTRAL SPECIES	8	ENSGT00940000154799 #7	ENSGT00940000163147 #8	ENSGT00940000155702 #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00940000154639 #12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00390000017580.bb #17	ENSGT00390000016972.a.a.b.b.a	ENSGT00950000182891.a.a.b.a.b.a.i	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT01090000260119.g	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00940000158264.a	ENSGT00530000063698.a.b	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00940000162721	ENSGT01010000224919	ENSGT00940000156220	ENSGT00940000155230	ENSGT00940000153607.c.a.d	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a	ENSGT00390000006950.n	ENSGT00390000018386
Beluga whale	MODERN SPECIES	60	VAPA (ENSDLEG00000019027) #7	TXNDC2 (ENSDLEG00000019018) #8	RAB31 (ENSDLEG00000019008) #9	PPP4R1 (ENSDLEG00000018972) #10	RALBP1 (ENSDLEG00000018964) #12	TWSG1 (ENSDLEG00000018954) #13	ANKRD12 (ENSDLEG00000018940) #15	NDUFV2 (ENSDLEG00000018918) #17	ENSDLEG00000018908	ENSDLEG00000018903	MTCL1 (ENSDLEG00000018871) #18	RAB12 (ENSDLEG00000018863) #19	PTPRM (ENSDLEG00000018839) #20	LRRC30 (ENSDLEG00000018835)	ENSDLEG00000018830	LAMA1 (ENSDLEG00000016968) #22	ARHGAP28 (ENSDLEG00000016628) #25	L3MBTL4 (ENSDLEG00000016582)	EPB41L3 (ENSDLEG00000016342)	ZBTB14 (ENSDLEG00000016304)	ENSDLEG00000016292	ENSDLEG00000016274	ENSDLEG00000016260	ENSDLEG00000016252	DLGAP1 (ENSDLEG00000016208)	TGIF1 (ENSDLEG00000016192)	MYL12B (ENSDLEG00000016178)	MYOM1 (ENSDLEG00000016123)	LPIN2 (ENSDLEG00000015907)	EMILIN2 (ENSDLEG00000015862)	SMCHD1 (ENSDLEG00000015395)
Narwhal	MODERN SPECIES	295	ENSMMNG00015000248 #8	RAB31 (ENSMMNG00015000217) #9	PPP4R1 (ENSMMNG00015000106) #10	RALBP1 (ENSMMNG00015000051) #12	TWSG1 (ENSMMNG00015000024) #13	ANKRD12 (ENSMMNG00015004552) #15	ENSMMNG00015004540 #17	ENSMMNG00015004533	ENSMMNG00015004524	ENSMMNG00015004519	MTCL1 (ENSMMNG00015004489) #18	RAB12 (ENSMMNG00015004463) #19	PTPRM (ENSMMNG00015004419) #20	LRRC30 (ENSMMNG00015004392) #21	ENSMMNG00015004377	LAMA1 (ENSMMNG00015004339) #22	ARHGAP28 (ENSMMNG00015004258) #25	L3MBTL4 (ENSMMNG00015004217)	TMEM200C (ENSMMNG00015004206)	EPB41L3 (ENSMMNG00015004048)	ZBTB14 (ENSMMNG00015003972)	ENSMMNG00015003965	ENSMMNG00015003955	ENSMMNG00015003932	ENSMMNG00015003912	ENSMMNG00015003903	DLGAP1 (ENSMMNG00015003747)	TGIF1 (ENSMMNG00015003660)	MYL12A (ENSMMNG00015003634)	MYOM1 (ENSMMNG00015003548)	LPIN2 (ENSMMNG00015003446)
Vaquita	MODERN SPECIES	5	VAPA (ENSPSNG00000017748) #7	ENSPSNG00000017718 #8	RAB31 (ENSPSNG00000017687) #9	PPP4R1 (ENSPSNG00000017624) #10	RALBP1 (ENSPSNG00000017573) #12	TWSG1 (ENSPSNG00000017506) #13	ANKRD12 (ENSPSNG00000017401) #15	ENSPSNG00000017339 #17	ENSPSNG00000017305	ENSPSNG00000017284	MTCL1 (ENSPSNG00000016975) #18	RAB12 (ENSPSNG00000016896) #19	PTPRM (ENSPSNG00000016821) #20	LRRC30 (ENSPSNG00000016795) #21	ENSPSNG00000016720	LAMA1 (ENSPSNG00000016083) #22	ARHGAP28 (ENSPSNG00000015095) #25	L3MBTL4 (ENSPSNG00000014623)	TMEM200C (ENSPSNG00000014585)	EPB41L3 (ENSPSNG00000012785)	ZBTB14 (ENSPSNG00000012511)	ENSPSNG00000012501	AKAIN1 (ENSPSNG00000012463)	ENSPSNG00000012425	ENSPSNG00000012382	ENSPSNG00000012349	ENSPSNG00000012311	DLGAP1 (ENSPSNG00000011076)	TGIF1 (ENSPSNG00000010898)	ENSPSNG00000010881	MYL12A (ENSPSNG00000010765)
Dolphin	MODERN SPECIES	3142																LAMA1 (ENSTTRG00000003209) #22
Sperm whale	MODERN SPECIES	10	VAPA (ENSPCTG00005022215) #7	ENSPCTG00005022222 #8	RAB31 (ENSPCTG00005022229) #9	PPP4R1 (ENSPCTG00005022253) #10	ENSPCTG00005022290	RALBP1 (ENSPCTG00005022298) #12	TWSG1 (ENSPCTG00005022308) #13	ANKRD12 (ENSPCTG00005022318) #15	ENSPCTG00005022333 #17	MTCL1 (ENSPCTG00005022346) #18	ENSPCTG00005009165	RAB12 (ENSPCTG00005009191) #19	PTPRM (ENSPCTG00005009359) #20	ENSPCTG00005010629	LRRC30 (ENSPCTG00005010734) #21	LAMA1 (ENSPCTG00005010960) #22	ARHGAP28 (ENSPCTG00005012161) #25	L3MBTL4 (ENSPCTG00005012962)	TMEM200C (ENSPCTG00005013590)	EPB41L3 (ENSPCTG00005013615)	ZBTB14 (ENSPCTG00005013701)	ENSPCTG00005013791	AKAIN1 (ENSPCTG00005013812)	ENSPCTG00005013869	ENSPCTG00005013911	DLGAP1 (ENSPCTG00005014046)	TGIF1 (ENSPCTG00005015886)	MYL12A (ENSPCTG00005015983)	MYOM1 (ENSPCTG00005016147)	LPIN2 (ENSPCTG00005016430)	EMILIN2 (ENSPCTG00005016847)
Blue whale	MODERN SPECIES	5	APCDD1 (ENSBMSG00010010870)	VAPA (ENSBMSG00010010893) #7	ENSBMSG00010010925	ENSBMSG00010010939 #8	RAB31 (ENSBMSG00010010953) #9	PPP4R1 (ENSBMSG00010010985) #10	RALBP1 (ENSBMSG00010011048) #12	TWSG1 (ENSBMSG00010011081) #13	ANKRD12 (ENSBMSG00010011117) #15	ENSBMSG00010011158 #17	MTCL1 (ENSBMSG00010011190) #18	ENSBMSG00010011213	RAB12 (ENSBMSG00010011218) #19	PTPRM (ENSBMSG00010011264) #20	LRRC30 (ENSBMSG00010011359) #21	LAMA1 (ENSBMSG00010011398) #22	ENSBMSG00010011459	ARHGAP28 (ENSBMSG00010011506) #25	L3MBTL4 (ENSBMSG00010011632)	TMEM200C (ENSBMSG00010011652)	EPB41L3 (ENSBMSG00010011724)	ENSBMSG00010011884	AKAIN1 (ENSBMSG00010011889)	ENSBMSG00010011894	ENSBMSG00010011908	ENSBMSG00010011932	ENSBMSG00010011936	DLGAP1 (ENSBMSG00010012009)	ENSBMSG00010012252	TGIF1 (ENSBMSG00010012268)	MYL12A (ENSBMSG00010012284)
Pecora	ANCESTRAL SPECIES	26	ENSGT00390000005826.b	ENSGT00640000091492.a	ENSGT01030000234979	ENSGT00940000154799 #7	ENSGT00940000163147 #8	ENSGT00940000155702 #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00940000154639 #12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00390000017580 #17	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00530000063698.a.b	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00560000078638	ENSGT00940000156220	ENSGT00900000143817	ENSGT00940000155230	ENSGT00940000153607.c.b	ENSGT00940000153607.c.a.d	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a	ENSGT00390000006950.n	ENSGT00390000018386
Percora_a	ANCESTRAL SPECIES	28	ENSGT00390000005826.b	ENSGT00640000091492.a	ENSGT01030000234979	ENSGT00940000154799 #7	ENSGT00940000163147 #8	ENSGT00940000155702 #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00940000154639 #12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00390000017580 #17	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00530000063698.a.b	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00560000078638	ENSGT00940000156220	ENSGT00900000143817	ENSGT00940000155230	ENSGT00940000153607.c.b	ENSGT00940000153607.c.a.d	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a	ENSGT00390000006950.n	ENSGT00390000018386
Bovidae	ANCESTRAL SPECIES	28	ENSGT00390000005826.b	ENSGT00640000091492.a	ENSGT01030000234979	ENSGT00940000154799 #7	ENSGT00940000163147 #8	ENSGT00940000155702 #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00940000154639 #12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00390000017580.fb.a #17	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00530000063698.a.b	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00560000078638	ENSGT00940000156220	ENSGT00900000143817	ENSGT00940000155230	ENSGT00940000153607.c.b	ENSGT00940000153607.c.a.d	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a	ENSGT00390000006950.n	ENSGT00390000018386
Bovinae	ANCESTRAL SPECIES	28	ENSGT00940000154456	ENSGT00390000005826.b	ENSGT00640000091492.a	ENSGT00940000154799 #7	ENSGT00940000163147 #8	ENSGT00940000155702 #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00940000154639 #12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00390000017580.fb.a #17	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00530000063698.a.b	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00560000078638	ENSGT00940000156220.i	ENSGT00900000143817	ENSGT00940000155230	ENSGT00940000153607.c.b	ENSGT00940000153607.c.a.d	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a	ENSGT00390000006950.n	ENSGT00390000018386
Bos	ANCESTRAL SPECIES	29	ENSGT00640000091492.a	ENSGT00940000154799 #7	ENSGT00940000163147 #8	ENSGT01100000263481.n.b.a.b.b.a.b	ENSGT00940000155702 #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00940000154639 #12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00390000017580.fb.a #17	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT01100000263481.n.a.a.a.b.a.a.a.a.b.a.b.b.a.b.b	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00530000063698.a.b	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00560000078638	ENSGT00940000156220.i	ENSGT00940000155230	ENSGT00940000153607.c.b	ENSGT00940000153607.c.a.d	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a	ENSGT00390000006950.n	ENSGT00390000018386	ENSGT00390000016237
Bos_a	ANCESTRAL SPECIES	28	ENSGT00640000091492.a	ENSGT00940000154799 #7	ENSGT00940000163147 #8	ENSGT01100000263481.n.b.a.b.b.a.b	ENSGT00940000155702 #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00940000154639 #12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00390000017580.fb.a #17	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT01100000263481.n.a.a.a.b.a.a.a.a.b.a.b.b.a.b.b	ENSGT00940000155020.q #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00560000078638	ENSGT01050000245099	ENSGT00940000156220.i	ENSGT00940000155230	ENSGT00940000153607.c.a.d	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a	ENSGT00390000006950.n	ENSGT00390000018386	ENSGT00390000016237	ENSGT00950000183154.b.a.b
Wild yak	MODERN SPECIES	604														ENSBMUG00000007989 #20	LRRC30 (ENSBMUG00000008336) #21	LAMA1 (ENSBMUG00000008387) #22	ARHGAP28 (ENSBMUG00000008436) #25	EPB41L3 (ENSBMUG00000008474)	ZBTB14 (ENSBMUG00000008482)	AKAIN1 (ENSBMUG00000008489)
Domestic yak	MODERN SPECIES	13	APCDD1 (ENSBGRG00000025967)	VAPA (ENSBGRG00000025948) #7	ENSBGRG00000025943 #8	ENSBGRG00000025938	RAB31 (ENSBGRG00000025923) #9	PPP4R1 (ENSBGRG00000025046) #10	ENSBGRG00000024943 #12	TWSG1 (ENSBGRG00000024927) #13	ANKRD12 (ENSBGRG00000024894) #15	NDUFV2 (ENSBGRG00000024870) #17	MTCL1 (ENSBGRG00000024711) #18	RAB12 (ENSBGRG00000024618) #19	ENSBGRG00000024579	PTPRM (ENSBGRG00000024466) #20	LRRC30 (ENSBGRG00000024420) #21	LAMA1 (ENSBGRG00000024286) #22	ARHGAP28 (ENSBGRG00000023924) #25	ENSBGRG00000023895	EPB41L3 (ENSBGRG00000023492)	ZBTB14 (ENSBGRG00000023412)	ENSBGRG00000023385	DLGAP1 (ENSBGRG00000022857)	TGIF1 (ENSBGRG00000022806)	ENSBGRG00000022793	MYL12A (ENSBGRG00000022681)	MYOM1 (ENSBGRG00000022019)	LPIN2 (ENSBGRG00000021549)	EMILIN2 (ENSBGRG00000021481)	ENSBGRG00000021468	SMCHD1 (ENSBGRG00000021081)	NDC80 (ENSBGRG00000021015)
Bos_b	ANCESTRAL SPECIES	34	ENSGT00390000005826.b	ENSGT00640000091492.a	ENSGT00940000154799 #7	ENSGT00940000163147 #8	ENSGT01100000263481.n.b.a.b.b.a.b	ENSGT00940000155702 #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00940000154639 #12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00390000017580.fb.a #17	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT01100000263481.n.a.a.a.b.a.a.a.a.b.a.b.b.a.b.b	ENSGT00940000155020 #20	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00530000063698.a.b	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00560000078638	ENSGT00940000156220.i	ENSGT00940000155230	ENSGT00940000153607.c.b	ENSGT00940000153607.c.a.d	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a	ENSGT00390000006950.n	ENSGT00390000018386	ENSGT00390000016237
Cow	MODERN SPECIES	16	APCDD1 (ENSBTAG00000005154)	VAPA (ENSBTAG00000017279) #7	TXNDC2 (ENSBTAG00000017276) #8	ENSBTAG00000051035	RAB31 (ENSBTAG00000046533) #9	PPP4R1 (ENSBTAG00000009822) #10	RALBP1 (ENSBTAG00000021250) #12	TWSG1 (ENSBTAG00000001805) #13	ANKRD12 (ENSBTAG00000002755) #15	NDUFV2 (ENSBTAG00000004871) #17	MTCL1 (ENSBTAG00000009459) #18	RAB12 (ENSBTAG00000010356) #19	PTPRM (ENSBTAG00000024015) #20	ENSBTAG00000048323	LRRC30 (ENSBTAG00000046046)	LAMA1 (ENSBTAG00000018160) #22	ARHGAP28 (ENSBTAG00000019036) #25	TMEM200C (ENSBTAG00000046396)	EPB41L3 (ENSBTAG00000019251)	ZBTB14 (ENSBTAG00000038970)	ENSBTAG00000053533	DLGAP1 (ENSBTAG00000005372)	TGIF1 (ENSBTAG00000007718)	MYL12B (ENSBTAG00000026266)	MYL12A (ENSBTAG00000016024)	MYOM1 (ENSBTAG00000019585)	LPIN2 (ENSBTAG00000012060)	EMILIN2 (ENSBTAG00000003880)	SMCHD1 (ENSBTAG00000003354)	NDC80 (ENSBTAG00000021673)	METTL4 (ENSBTAG00000021668)
Hybrid Bos Indicus	MODERN SPECIES	16	NAPG (ENSBIXG00005000927)	APCDD1 (ENSBIXG00005010715)	VAPA (ENSBIXG00005010793) #7	ENSBIXG00005000949 #8	ENSBIXG00005010813	RAB31 (ENSBIXG00005005810) #9	PPP4R1 (ENSBIXG00005000988) #10	RALBP1 (ENSBIXG00005005814) #12	TWSG1 (ENSBIXG00005001011) #13	ANKRD12 (ENSBIXG00005007098) #15	ENSBIXG00005011194 #17	MTCL1 (ENSBIXG00005011362) #18	RAB12 (ENSBIXG00005011412) #19	ENSBIXG00005006785	PTPRM (ENSBIXG00005011755) #20	LAMA1 (ENSBIXG00005011945) #22	ARHGAP28 (ENSBIXG00005012393) #25	TMEM200C (ENSBIXG00005005828)	ENSBIXG00005012473	EPB41L3 (ENSBIXG00005012607)	ZBTB14 (ENSBIXG00005012690)	AKAIN1 (ENSBIXG00005012720)	DLGAP1 (ENSBIXG00005013290)	TGIF1 (ENSBIXG00005006727)	MYL12B (ENSBIXG00005007006)	MYL12A (ENSBIXG00005013437)	MYOM1 (ENSBIXG00005013491)	LPIN2 (ENSBIXG00005013528)	EMILIN2 (ENSBIXG00005013554)	SMCHD1 (ENSBIXG00005013581)	NDC80 (ENSBIXG00005007711)
American bison	MODERN SPECIES	3313	ENSBBBG00000013167	NAPG (ENSBBBG00000013162)	ENSBBBG00000002652	ENSBBBG00000013141 #7	ENSBBBG00000013135 #8	RAB31 (ENSBBBG00000013125) #9	PPP4R1 (ENSBBBG00000002630) #10	RALBP1 (ENSBBBG00000007403) #12	TWSG1 (ENSBBBG00000013015) #13	ANKRD12 (ENSBBBG00000012995) #15	ENSBBBG00000009089 #17	MTCL1 (ENSBBBG00000002552) #18	RAB12 (ENSBBBG00000012908) #19	PTPRM (ENSBBBG00000012894) #20	LRRC30 (ENSBBBG00000008110) #21	LAMA1 (ENSBBBG00000002496) #22	ARHGAP28 (ENSBBBG00000002486) #25	EPB41L3 (ENSBBBG00000001808)	ZBTB14 (ENSBBBG00000008903)	AKAIN1 (ENSBBBG00000012712)
Caprinae	ANCESTRAL SPECIES	25	ENSGT00640000091492.a	ENSGT01030000234979	ENSGT00940000154799 #7	ENSGT00940000163147 #8	ENSGT00940000155702 #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00940000154639 #12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00390000017580.fb.a #17	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT00940000164030	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00530000063698.a.b	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00560000078638	ENSGT00940000156220	ENSGT00940000155230	ENSGT00940000153607.c.b	ENSGT00940000153607.c.a.d	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a	ENSGT00390000006950.n	ENSGT00390000018386	ENSGT00390000016237
Goat	MODERN SPECIES	16	NAPG (ENSCHIG00000000361)	APCDD1 (ENSCHIG00000000292)	ENSCHIG00000000256	VAPA (ENSCHIG00000000215) #7	RAB31 (ENSCHIG00000000146) #9	PPP4R1 (ENSCHIG00000017595) #10	RALBP1 (ENSCHIG00000015737) #12	TWSG1 (ENSCHIG00000026440) #13	ENSCHIG00000007393 #15	ENSCHIG00000013412 #15	ENSCHIG00000015681 #17	MTCL1 (ENSCHIG00000023205) #18	RAB12 (ENSCHIG00000016103) #19	PTPRM (ENSCHIG00000015240) #20	ENSCHIG00000010759	ENSCHIG00000005295 #22	ARHGAP28 (ENSCHIG00000022452) #25	TMEM200C (ENSCHIG00000004586)	EPB41L3 (ENSCHIG00000023908)	ZBTB14 (ENSCHIG00000004440)	DLGAP1 (ENSCHIG00000017982)	TGIF1 (ENSCHIG00000011164)	MYL12B (ENSCHIG00000009461)	MYL12A (ENSCHIG00000016398)	MYOM1 (ENSCHIG00000014135)	LPIN2 (ENSCHIG00000010140)	ENSCHIG00000000471	EMILIN2 (ENSCHIG00000000425)	SMCHD1 (ENSCHIG00000000392)	NDC80 (ENSCHIG00000000360)	METTL4 (ENSCHIG00000000254)
Siberian musk deer	MODERN SPECIES	132	APCDD1 (ENSMMSG00000013793)	ENSMMSG00000013822 #7	ENSMMSG00000013865 #8	RAB31 (ENSMMSG00000013877) #9	PPP4R1 (ENSMMSG00000013895) #10	RALBP1 (ENSMMSG00000013951) #12	TWSG1 (ENSMMSG00000013973) #13	ANKRD12 (ENSMMSG00000014011) #15	NDUFV2 (ENSMMSG00000014094) #17	MTCL1 (ENSMMSG00000014119) #18	RAB12 (ENSMMSG00000014211) #19	ENSMMSG00000014253	ENSMMSG00000014263	PTPRM (ENSMMSG00000014281) #20	LRRC30 (ENSMMSG00000014378) #21	LAMA1 (ENSMMSG00000014407) #22	ARHGAP28 (ENSMMSG00000014590) #25	TMEM200C (ENSMMSG00000015145)	EPB41L3 (ENSMMSG00000015156)	ZBTB14 (ENSMMSG00000015196)	AKAIN1 (ENSMMSG00000015213)	ENSMMSG00000015226	DLGAP1 (ENSMMSG00000015330)	ENSMMSG00000016560	TGIF1 (ENSMMSG00000016578)	MYL12A (ENSMMSG00000016648)	MYOM1 (ENSMMSG00000016741)	LPIN2 (ENSMMSG00000008712)	EMILIN2 (ENSMMSG00000008939)	SMCHD1 (ENSMMSG00000008985)	NDC80 (ENSMMSG00000009103)
Yarkand deer	MODERN SPECIES	19	ENSCHYG00000019818	PIEZO2 (ENSCHYG00000019969)	NAPG (ENSCHYG00000022395)	APCDD1 (ENSCHYG00000022475)	ENSCHYG00000022539	VAPA (ENSCHYG00000022578) #7	PPP4R1 (ENSCHYG00000022849) #10	RALBP1 (ENSCHYG00000022911) #12	TWSG1 (ENSCHYG00000022972) #13	ANKRD12 (ENSCHYG00000023012) #15	ENSCHYG00000023192 #17	MTCL1 (ENSCHYG00000023220) #18	RAB12 (ENSCHYG00000023329) #19	PTPRM (ENSCHYG00000023397) #20	LRRC30 (ENSCHYG00000024222) #21	LAMA1 (ENSCHYG00000024245) #22	ARHGAP28 (ENSCHYG00000024509) #25	EPB41L3 (ENSCHYG00000024994)	ENSCHYG00000025521	ZBTB14 (ENSCHYG00000025527)	AKAIN1 (ENSCHYG00000025549)	ENSCHYG00000025565	ENSCHYG00000025583	ENSCHYG00000025600	DLGAP1 (ENSCHYG00000025662)	TGIF1 (ENSCHYG00000025940)	MYL12B (ENSCHYG00000025995)	ENSCHYG00000026009	MYOM1 (ENSCHYG00000014067)	ENSCHYG00000014825	ENSCHYG00000014880
Camelidae	ANCESTRAL SPECIES	84	ENSGT00940000155271	ENSGT00940000154456	ENSGT00390000005826.b	ENSGT00640000091492.a	ENSGT00940000154799 #7	ENSGT00940000163147 #8	ENSGT00950000183066.a.b.a.a #10	ENSGT00940000154639 #12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00390000017580 #17	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00940000155020 #20	ENSGT00940000164030	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00940000158264.a	ENSGT00530000063698.a.b	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00560000078638	ENSGT00940000156220	ENSGT00940000155230	ENSGT00940000153607.c.a.d	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a	ENSGT00390000006950.n	ENSGT00390000018386	ENSGT00390000016237
Arabian camel	MODERN SPECIES	16	GNAL (ENSCDRG00005020405)	PIEZO2 (ENSCDRG00005016976)	NAPG (ENSCDRG00005016543)	APCDD1 (ENSCDRG00005016511)	ENSCDRG00005016399 #8	VAPA (ENSCDRG00005016224) #7	PPP4R1 (ENSCDRG00005015863) #10	RALBP1 (ENSCDRG00005015768) #12	TWSG1 (ENSCDRG00005015713) #13	ANKRD12 (ENSCDRG00005015595) #15	NDUFV2 (ENSCDRG00005015516) #17	MTCL1 (ENSCDRG00005015473) #18	RAB12 (ENSCDRG00005015408) #19	PTPRM (ENSCDRG00005014275) #20	ENSCDRG00005014205	LAMA1 (ENSCDRG00005013670) #22	ARHGAP28 (ENSCDRG00005013537) #25	L3MBTL4 (ENSCDRG00005013404)	EPB41L3 (ENSCDRG00005012623)	ZBTB14 (ENSCDRG00005012548)	AKAIN1 (ENSCDRG00005012508)	DLGAP1 (ENSCDRG00005010492)	TGIF1 (ENSCDRG00005010359)	MYL12A (ENSCDRG00005010206)	MYOM1 (ENSCDRG00005009826)	LPIN2 (ENSCDRG00005009560)	EMILIN2 (ENSCDRG00005009377)	SMCHD1 (ENSCDRG00005009045)	NDC80 (ENSCDRG00005008870)	METTL4 (ENSCDRG00005020546)	ADCYAP1 (ENSCDRG00005020536)
Alpaca	MODERN SPECIES	3079																LAMA1 (ENSVPAG00000004488) #22	ARHGAP28 (ENSVPAG00000004487) #25
Suina	ANCESTRAL SPECIES	40	ENSGT00940000154456	ENSGT00390000005826.b	ENSGT00640000091492.a	ENSGT00940000154799 #7	ENSGT00940000163147 #8	ENSGT00940000155702 #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00940000154639 #12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00390000017580 #17	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00530000063698.a.b	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00940000162721	ENSGT00560000078638	ENSGT00940000156220	ENSGT00940000155230	ENSGT00940000153607.c.b	ENSGT00940000153607.c.a.d	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a	ENSGT00390000006950.n	ENSGT00390000018386
Pig	MODERN SPECIES	14	PIEZO2 (ENSSSCG00000034765)	NAPG (ENSSSCG00000038533)	APCDD1 (ENSSSCG00000039797)	VAPA (ENSSSCG00000038465) #7	ENSSSCG00000062616 #8	RAB31 (ENSSSCG00000037264) #9	PPP4R1 (ENSSSCG00000003679) #10	RALBP1 (ENSSSCG00000003680) #12	TWSG1 (ENSSSCG00000039663) #13	ANKRD12 (ENSSSCG00000003682) #15	NDUFV2 (ENSSSCG00000038826) #17	MTCL1 (ENSSSCG00000003684) #18	RAB12 (ENSSSCG00000038026) #19	PTPRM (ENSSSCG00000028805) #20	ENSSSCG00000023672	LAMA1 (ENSSSCG00000034767) #22	ARHGAP28 (ENSSSCG00000021612) #25	TMEM200C (ENSSSCG00000039627)	ENSSSCG00000054462	EPB41L3 (ENSSSCG00000003687)	ENSSSCG00000036800	ZBTB14 (ENSSSCG00000033032)	AKAIN1 (ENSSSCG00000056207)	DLGAP1 (ENSSSCG00000003690)	TGIF1 (ENSSSCG00000024174)	MYL12B (ENSSSCG00000058470)	ENSSSCG00000003691	MYOM1 (ENSSSCG00000003693)	LPIN2 (ENSSSCG00000038494)	EMILIN2 (ENSSSCG00000003694)	SMCHD1 (ENSSSCG00000029030)
Chacoan peccary	MODERN SPECIES	862	PIEZO2 (ENSCWAG00000013720)	NAPG (ENSCWAG00000013521)	APCDD1 (ENSCWAG00000013473)	VAPA (ENSCWAG00000013399) #7	ENSCWAG00000013300 #8	RAB31 (ENSCWAG00000013267) #9	PPP4R1 (ENSCWAG00000013230) #10	RALBP1 (ENSCWAG00000013182) #12	TWSG1 (ENSCWAG00000013144) #13	ANKRD12 (ENSCWAG00000013063) #15	NDUFV2 (ENSCWAG00000012959) #17	MTCL1 (ENSCWAG00000012924) #18	RAB12 (ENSCWAG00000012826) #19	PTPRM (ENSCWAG00000012594) #20	LRRC30 (ENSCWAG00000012566) #21	LAMA1 (ENSCWAG00000012485) #22	ARHGAP28 (ENSCWAG00000012324) #25	TMEM200C (ENSCWAG00000012298)	EPB41L3 (ENSCWAG00000011105)	ZBTB14 (ENSCWAG00000011021)	ENSCWAG00000010946	AKAIN1 (ENSCWAG00000010892)	DLGAP1 (ENSCWAG00000008322)	TGIF1 (ENSCWAG00000008192)	MYL12A (ENSCWAG00000008049)	MYOM1 (ENSCWAG00000007790)	LPIN2 (ENSCWAG00000007732)	EMILIN2 (ENSCWAG00000007714)	SMCHD1 (ENSCWAG00000007610)	NDC80 (ENSCWAG00000007581)	METTL4 (ENSCWAG00000007542)
Laurasiatheria_b	ANCESTRAL SPECIES	13	ENSGT00390000005826.b	ENSGT00640000091492.a	ENSGT00940000154799 #7	ENSGT00940000163147 #8	ENSGT00940000155702 #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00910000147048 #11	ENSGT00940000154639 #12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00390000017580 #17	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00940000158264.a	ENSGT00530000063698.a.b	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00560000078638	ENSGT00940000156220	ENSGT00900000143817	ENSGT00940000155230	ENSGT00940000153607.c.b	ENSGT00940000153607.c.a.d	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a	ENSGT00390000006950.n
Carnivora	ANCESTRAL SPECIES	13	ENSGT00390000005826.b	ENSGT00640000091492.a	ENSGT00940000154799 #7	ENSGT00940000163147 #8	ENSGT00940000155702 #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00910000147048 #11	ENSGT00940000154639 #12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00390000017580 #17	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00940000158264.a	ENSGT00530000063698.a.b	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00560000078638	ENSGT00940000156220	ENSGT00900000143817	ENSGT00940000155230	ENSGT00940000153607.c.b	ENSGT00940000153607.c.a.d	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a	ENSGT00390000006950.n
Caniformia	ANCESTRAL SPECIES	9	ENSGT00390000005826.b	ENSGT00640000091492.a	ENSGT00940000154799 #7	ENSGT00940000163147 #8	ENSGT00940000155702 #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00910000147048 #11	ENSGT00940000154639 #12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00390000017580 #17	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00940000158264.a	ENSGT00530000063698.a.b	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00560000078638	ENSGT00940000156220	ENSGT00940000155230	ENSGT00940000153607.c.b	ENSGT00940000153607.c.a.d	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a	ENSGT00390000006950.n	ENSGT00390000018386
Caniformia_b	ANCESTRAL SPECIES	25	ENSGT00390000005826.b	ENSGT00640000091492.a	ENSGT00940000154799 #7	ENSGT00940000163147 #8	ENSGT00940000155702 #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00910000147048 #11	ENSGT00940000154639 #12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00390000017580 #17	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00940000158264.a	ENSGT00530000063698.a.b	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00560000078638	ENSGT00940000156220	ENSGT00940000155230	ENSGT00940000153607.c.b	ENSGT00940000153607.c.a.d	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a	ENSGT00390000006950.n	ENSGT00390000018386
Ursidae	ANCESTRAL SPECIES	23	ENSGT00950000182832.D.b	ENSGT00940000154456	ENSGT00390000005826.b	ENSGT00640000091492.a	ENSGT00940000155702 #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00910000147048 #11	ENSGT00940000154639 #12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00390000017580 #17	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00940000158264.a	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00560000078638	ENSGT00940000156220	ENSGT00940000155230	ENSGT00940000153607.c.b	ENSGT00940000153607.c.a.d	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a	ENSGT00390000006950.n	ENSGT00390000018386	ENSGT00390000016237
Ursus	ANCESTRAL SPECIES	25	ENSGT00390000005826.b	ENSGT00640000091492.a	ENSGT00940000154799 #7	ENSGT00940000163147 #8	ENSGT00940000155702 #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00910000147048 #11	ENSGT00940000154639 #12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00390000017580 #17	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00940000158264.a	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00560000078638	ENSGT00940000156220	ENSGT00940000155230	ENSGT00940000153607.c.b	ENSGT00940000153607.c.a.d	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a	ENSGT00390000006950.n	ENSGT00390000018386	ENSGT00390000016237
Polar bear	MODERN SPECIES	96	APCDD1 (ENSUMAG00000018616)	ENSUMAG00000018630	VAPA (ENSUMAG00000018637) #7	ENSUMAG00000018646 #8	RAB31 (ENSUMAG00000018654) #9	PPP4R1 (ENSUMAG00000018678) #10	ENSUMAG00000018685 #11	RALBP1 (ENSUMAG00000018688) #12	TWSG1 (ENSUMAG00000018695) #13	ANKRD12 (ENSUMAG00000018698) #15	NDUFV2 (ENSUMAG00000018713) #17	MTCL1 (ENSUMAG00000018721) #18	ENSUMAG00000018727 #19	PTPRM (ENSUMAG00000018739) #20	LRRC30 (ENSUMAG00000018751) #21	LAMA1 (ENSUMAG00000018773) #22	ARHGAP28 (ENSUMAG00000018815) #25	L3MBTL4 (ENSUMAG00000018879)	EPB41L3 (ENSUMAG00000018925)	ZBTB14 (ENSUMAG00000018942)	AKAIN1 (ENSUMAG00000018955)	DLGAP1 (ENSUMAG00000018976)	TGIF1 (ENSUMAG00000019091)	MYL12B (ENSUMAG00000019096)	MYL12A (ENSUMAG00000019097)	MYOM1 (ENSUMAG00000019140)	LPIN2 (ENSUMAG00000019544)	EMILIN2 (ENSUMAG00000019556)	SMCHD1 (ENSUMAG00000019575)	NDC80 (ENSUMAG00000019602)	METTL4 (ENSUMAG00000019651)
American black bear	MODERN SPECIES	5683																ENSUAMG00000000159 #22
Giant Panda	MODERN SPECIES	5	ENSAMEG00000027211	PIEZO2 (ENSAMEG00000007710)	NAPG (ENSAMEG00000007651)	APCDD1 (ENSAMEG00000007627)	ENSAMEG00000007605 #9	ENSAMEG00000031168 #8	PPP4R1 (ENSAMEG00000007530) #10	ENSAMEG00000007499 #12	TWSG1 (ENSAMEG00000028641) #13	ANKRD12 (ENSAMEG00000007392) #15	NDUFV2 (ENSAMEG00000007415) #17	MTCL1 (ENSAMEG00000007437) #18	RAB12 (ENSAMEG00000007452) #19	PTPRM (ENSAMEG00000007456) #20	LRRC30 (ENSAMEG00000018805) #21	LAMA1 (ENSAMEG00000007475) #22	ARHGAP28 (ENSAMEG00000006845) #25	L3MBTL4 (ENSAMEG00000006857)	EPB41L3 (ENSAMEG00000000602)	ZBTB14 (ENSAMEG00000020014)	AKAIN1 (ENSAMEG00000020013)	DLGAP1 (ENSAMEG00000012677)	TGIF1 (ENSAMEG00000012674)	MYL12B (ENSAMEG00000028707)	MYL12A (ENSAMEG00000026960)	MYOM1 (ENSAMEG00000010570)	LPIN2 (ENSAMEG00000009951)	EMILIN2 (ENSAMEG00000009998)	SMCHD1 (ENSAMEG00000010022)	NDC80 (ENSAMEG00000010069)	METTL4 (ENSAMEG00000010116)
Mustelinae	ANCESTRAL SPECIES	5	ENSGT00390000005826.b	ENSGT00640000091492.a	ENSGT00940000154799 #7	ENSGT00940000163147 #8	ENSGT00940000155702 #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00910000147048 #11	ENSGT00940000154639 #12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00390000017580 #17	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00940000158264.a	ENSGT00530000063698.a.b	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00560000078638	ENSGT00940000156220	ENSGT00940000155230	ENSGT00940000153607.c.b	ENSGT00940000153607.c.a.d	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a	ENSGT00390000006950.n	ENSGT00390000018386
American mink	MODERN SPECIES	31	VAPA (ENSNVIG00000010179) #7	ENSNVIG00000010200 #8	RAB31 (ENSNVIG00000010213) #9	ENSNVIG00000010236	PPP4R1 (ENSNVIG00000010254) #10	ENSNVIG00000010325 #11	ENSNVIG00000010328 #12	ENSNVIG00000010341	TWSG1 (ENSNVIG00000010343) #13	ANKRD12 (ENSNVIG00000010366) #15	NDUFV2 (ENSNVIG00000010419) #17	MTCL1 (ENSNVIG00000010451) #18	RAB12 (ENSNVIG00000010489) #19	PTPRM (ENSNVIG00000010512) #20	LRRC30 (ENSNVIG00000010703) #21	LAMA1 (ENSNVIG00000010722) #22	ARHGAP28 (ENSNVIG00000010825) #25	L3MBTL4 (ENSNVIG00000010862)	EPB41L3 (ENSNVIG00000010941)	ZBTB14 (ENSNVIG00000011093)	AKAIN1 (ENSNVIG00000011118)	ENSNVIG00000011129	DLGAP1 (ENSNVIG00000011137)	TGIF1 (ENSNVIG00000011316)	MYL12B (ENSNVIG00000011345)	MYL12A (ENSNVIG00000011359)	MYOM1 (ENSNVIG00000011397)	LPIN2 (ENSNVIG00000011608)	EMILIN2 (ENSNVIG00000011628)	SMCHD1 (ENSNVIG00000011639)	NDC80 (ENSNVIG00000011663)
Ferret	MODERN SPECIES	170	APCDD1 (ENSMPUG00000004609)	VAPA (ENSMPUG00000004616) #7	ENSMPUG00000004625 #8	RAB31 (ENSMPUG00000004630) #9	PPP4R1 (ENSMPUG00000004641) #10	RALBP1 (ENSMPUG00000004662) #12	TWSG1 (ENSMPUG00000004674) #13	ANKRD12 (ENSMPUG00000004696) #15	NDUFV2 (ENSMPUG00000004710) #17	MTCL1 (ENSMPUG00000004784) #18	ENSMPUG00000004794	ENSMPUG00000004833	RAB12 (ENSMPUG00000004836) #19	PTPRM (ENSMPUG00000004846) #20	LRRC30 (ENSMPUG00000019881) #21	LAMA1 (ENSMPUG00000004879) #22	ARHGAP28 (ENSMPUG00000004917) #25	ENSMPUG00000004930	ENSMPUG00000004959	L3MBTL4 (ENSMPUG00000004964)	ENSMPUG00000019882	EPB41L3 (ENSMPUG00000004981)	ZBTB14 (ENSMPUG00000004990)	DLGAP1 (ENSMPUG00000004995)	TGIF1 (ENSMPUG00000005004)	MYL12B (ENSMPUG00000005011)	ENSMPUG00000005055	MYL12A (ENSMPUG00000005057)	MYOM1 (ENSMPUG00000005090)	LPIN2 (ENSMPUG00000005110)	EMILIN2 (ENSMPUG00000005128)
Canidae	ANCESTRAL SPECIES	1	ENSGT00940000154456	ENSGT00390000005826.b	ENSGT00640000091492.a	ENSGT00940000154799 #7	ENSGT00940000163147 #8	ENSGT00940000155702 #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00940000154639 #12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00390000017580 #17	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00940000158264.a	ENSGT00530000063698.a.b	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00560000078638	ENSGT00940000156220	ENSGT00940000155230	ENSGT00940000153607.c.b	ENSGT00940000153607.c.a.d	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a	ENSGT00390000006950.n	ENSGT00390000018386
Canis_lupus	ANCESTRAL SPECIES	4	ENSGT00940000154456	ENSGT00390000005826.b	ENSGT00640000091492.a	ENSGT00940000154799 #7	ENSGT00940000163147 #8	ENSGT00940000155702 #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00940000154639 #12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00390000017580 #17	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00940000158264.a	ENSGT00530000063698.a.b	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00560000078638	ENSGT00940000156220	ENSGT00940000155230	ENSGT00940000155458.pc	ENSGT00940000153607.c.b	ENSGT00940000153607.c.a.d	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a	ENSGT00390000006950.n
Dingo	DUPLICATION
Dingo	DUPLICATION
Dingo	MODERN SPECIES	271	ENSCAFG00020023786	ENSCAFG00020023785	PPP4R1 (ENSCAFG00020023782) #10	RALBP1 (ENSCAFG00020023780) #12	ENSCAFG00020023779	TWSG1 (ENSCAFG00020023775) #13	ENSCAFG00020023774 #15	ENSCAFG00020023769 #15	NDUFV2 (ENSCAFG00020023766) #17	MTCL1 (ENSCAFG00020023727) #18	RAB12 (ENSCAFG00020023721) #19	PTPRM (ENSCAFG00020022563) #20	LRRC30 (ENSCAFG00020022537) #21	ENSCAFG00020022536	ENSCAFG00020022535 #22	ENSCAFG00020022531 #22	ENSCAFG00020022530 #25	ENSCAFG00020022528	ENSCAFG00020022527	L3MBTL4 (ENSCAFG00020022524)	EPB41L3 (ENSCAFG00020021170)	ENSCAFG00020021069	ZBTB14 (ENSCAFG00020021068)	ENSCAFG00020021066	ENSCAFG00020021056	DLGAP1 (ENSCAFG00020020947)	TGIF1 (ENSCAFG00020020919)	ENSCAFG00020020914	MYL12B (ENSCAFG00020020908)	ENSCAFG00020020906	MYOM1 (ENSCAFG00020020583)
Dingo	MODERN SPECIES	271	ENSCAFG00020023787 #9	ENSCAFG00020023786	ENSCAFG00020023785	PPP4R1 (ENSCAFG00020023782) #10	RALBP1 (ENSCAFG00020023780) #12	ENSCAFG00020023779	TWSG1 (ENSCAFG00020023775) #13	ENSCAFG00020023774 #15	ENSCAFG00020023769 #15	NDUFV2 (ENSCAFG00020023766) #17	MTCL1 (ENSCAFG00020023727) #18	RAB12 (ENSCAFG00020023721) #19	PTPRM (ENSCAFG00020022563) #20	LRRC30 (ENSCAFG00020022537) #21	ENSCAFG00020022536	ENSCAFG00020022535 #22	ENSCAFG00020022531 #22	ENSCAFG00020022530 #25	ENSCAFG00020022528	ENSCAFG00020022527	L3MBTL4 (ENSCAFG00020022524)	EPB41L3 (ENSCAFG00020021170)	ENSCAFG00020021069	ZBTB14 (ENSCAFG00020021068)	ENSCAFG00020021066	ENSCAFG00020021056	DLGAP1 (ENSCAFG00020020947)	TGIF1 (ENSCAFG00020020919)	ENSCAFG00020020914	MYL12B (ENSCAFG00020020908)	ENSCAFG00020020906
Dingo	MODERN SPECIES	350																ENSCAFG00020008989 #22
Dog	MODERN SPECIES	35	VAPA (ENSCAFG00845004692) #7	ENSCAFG00845004677 #8	RAB31 (ENSCAFG00845004662) #9	PPP4R1 (ENSCAFG00845004616) #10	RALBP1 (ENSCAFG00845004603) #12	TWSG1 (ENSCAFG00845004527) #13	ENSCAFG00845004503	ANKRD12 (ENSCAFG00845004481) #15	NDUFV2 (ENSCAFG00845004461) #17	ENSCAFG00845004451	MTCL1 (ENSCAFG00845004330) #18	RAB12 (ENSCAFG00845004291) #19	PTPRM (ENSCAFG00845004181) #20	LRRC30 (ENSCAFG00845004098) #21	ENSCAFG00845004087	LAMA1 (ENSCAFG00845004002) #22	ENSCAFG00845003930	ARHGAP28 (ENSCAFG00845003916) #25	L3MBTL4 (ENSCAFG00845003867)	TMEM200C (ENSCAFG00845003836)	EPB41L3 (ENSCAFG00845003573)	ZBTB14 (ENSCAFG00845003431)	AKAIN1 (ENSCAFG00845003415)	DLGAP1 (ENSCAFG00845003202)	TGIF1 (ENSCAFG00845003025)	ENSCAFG00845003014	MYL12B (ENSCAFG00845003004)	ENSCAFG00845002989	MYOM1 (ENSCAFG00845002811)	LPIN2 (ENSCAFG00845002673)	EMILIN2 (ENSCAFG00845002641)
Red fox	MODERN SPECIES	55	VAPA (ENSVVUG00000011865) #7	ENSVVUG00000011863 #8	RAB31 (ENSVVUG00000011854) #9	PPP4R1 (ENSVVUG00000011841) #10	ENSVVUG00000011839	RALBP1 (ENSVVUG00000011826) #12	TWSG1 (ENSVVUG00000011819) #13	ENSVVUG00000011816	ANKRD12 (ENSVVUG00000011805) #15	NDUFV2 (ENSVVUG00000011795) #17	MTCL1 (ENSVVUG00000011763) #18	RAB12 (ENSVVUG00000011748) #19	PTPRM (ENSVVUG00000011599) #20	LRRC30 (ENSVVUG00000011556) #21	ENSVVUG00000011552	LAMA1 (ENSVVUG00000010548) #22	ENSVVUG00000010487	ARHGAP28 (ENSVVUG00000010346) #25	L3MBTL4 (ENSVVUG00000010230)	ENSVVUG00000010208	EPB41L3 (ENSVVUG00000010125)	ZBTB14 (ENSVVUG00000010107)	DLGAP1 (ENSVVUG00000009317)	TGIF1 (ENSVVUG00000009272)	MYL12B (ENSVVUG00000009238)	ENSVVUG00000009225	MYOM1 (ENSVVUG00000008791)	LPIN2 (ENSVVUG00000008689)	EMILIN2 (ENSVVUG00000008678)	SMCHD1 (ENSVVUG00000007320)	ENSVVUG00000007254
Felidae	ANCESTRAL SPECIES	24	ENSGT00940000154456	ENSGT00390000005826.b	ENSGT00640000091492.a	ENSGT00940000154799 #7	ENSGT00940000163147 #8	ENSGT00940000155702 #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00940000154639 #12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00390000017580 #17	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00940000158264.a	ENSGT00530000063698.a.b	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00560000078638	ENSGT00940000156220	ENSGT00900000143817	ENSGT00940000155230	ENSGT00940000153607.c.b	ENSGT00940000153607.c.a.d	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a	ENSGT00390000006950.n
Panthera	ANCESTRAL SPECIES	24	ENSGT00390000005826.b	ENSGT00640000091492.a	ENSGT01030000234767	ENSGT00940000154799 #7	ENSGT00940000163147 #8	ENSGT00940000155702 #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00940000154639 #12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00390000017580 #17	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00940000158264.a	ENSGT00530000063698.a.b	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00560000078638	ENSGT00940000156220	ENSGT00940000155230	ENSGT00940000153607.c.b	ENSGT00940000153607.c.a.d	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a	ENSGT00390000006950.n	ENSGT00390000018386
Panthera_a	ANCESTRAL SPECIES	26	ENSGT00390000005826.b	ENSGT00640000091492.a	ENSGT01030000234767	ENSGT00940000154799 #7	ENSGT00940000163147 #8	ENSGT00940000155702 #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00940000154639 #12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00390000017580 #17	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00940000158264.a	ENSGT00530000063698.a.b	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00560000078638	ENSGT00940000156220	ENSGT00940000155230	ENSGT00940000153607.c.a.d	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a	ENSGT00390000006950.n	ENSGT00390000018386	ENSGT00390000016237
leopard	MODERN SPECIES	74	NAPG (ENSPPRG00000013221)	APCDD1 (ENSPPRG00000014812)	ENSPPRG00000014861	VAPA (ENSPPRG00000015004) #7	ENSPPRG00000020344 #8	RAB31 (ENSPPRG00000015082) #9	PPP4R1 (ENSPPRG00000015699) #10	RALBP1 (ENSPPRG00000018300) #12	TWSG1 (ENSPPRG00000018563) #13	ANKRD12 (ENSPPRG00000018986) #15	NDUFV2 (ENSPPRG00000019611) #17	MTCL1 (ENSPPRG00000024571) #18	RAB12 (ENSPPRG00000024521) #19	PTPRM (ENSPPRG00000023610) #20	LRRC30 (ENSPPRG00000020824) #21	LAMA1 (ENSPPRG00000023072) #22	ARHGAP28 (ENSPPRG00000001666) #25	L3MBTL4 (ENSPPRG00000002728)	EPB41L3 (ENSPPRG00000003607)	ZBTB14 (ENSPPRG00000003993)	AKAIN1 (ENSPPRG00000004032)	DLGAP1 (ENSPPRG00000004760)	TGIF1 (ENSPPRG00000005045)	ENSPPRG00000005105	MYL12B (ENSPPRG00000005198)	MYL12A (ENSPPRG00000005441)	MYOM1 (ENSPPRG00000007760)	LPIN2 (ENSPPRG00000008144)	EMILIN2 (ENSPPRG00000008241)	SMCHD1 (ENSPPRG00000009812)	NDC80 (ENSPPRG00000010568)
lion	MODERN SPECIES	12	NAPG (ENSPLOG00000020727)	APCDD1 (ENSPLOG00000020761)	VAPA (ENSPLOG00000020790) #7	ENSPLOG00000020823 #8	RAB31 (ENSPLOG00000020843) #9	PPP4R1 (ENSPLOG00000020861) #10	RALBP1 (ENSPLOG00000020884) #12	TWSG1 (ENSPLOG00000011103) #13	ANKRD12 (ENSPLOG00000011193) #15	NDUFV2 (ENSPLOG00000011256) #17	ENSPLOG00000011275	MTCL1 (ENSPLOG00000011328) #18	RAB12 (ENSPLOG00000011564) #19	PTPRM (ENSPLOG00000011634) #20	LRRC30 (ENSPLOG00000011938) #21	LAMA1 (ENSPLOG00000011989) #22	ARHGAP28 (ENSPLOG00000012502) #25	L3MBTL4 (ENSPLOG00000012623)	TMEM200C (ENSPLOG00000012856)	EPB41L3 (ENSPLOG00000012964)	ZBTB14 (ENSPLOG00000013682)	AKAIN1 (ENSPLOG00000013714)	ENSPLOG00000013749	DLGAP1 (ENSPLOG00000013859)	TGIF1 (ENSPLOG00000014893)	MYL12A (ENSPLOG00000014986)	MYOM1 (ENSPLOG00000015128)	LPIN2 (ENSPLOG00000015556)	EMILIN2 (ENSPLOG00000015733)	SMCHD1 (ENSPLOG00000015887)	ENSPLOG00000016223
Tiger	MODERN SPECIES	185			NAPG (ENSPTIG00000010713)	APCDD1 (ENSPTIG00000010569)	ENSPTIG00000010442	VAPA (ENSPTIG00000009847) #7	RAB31 (ENSPTIG00000008864) #9	PPP4R1 (ENSPTIG00000007010) #10	RALBP1 (ENSPTIG00000005839) #12	TWSG1 (ENSPTIG00000003919) #13	ANKRD12 (ENSPTIG00000000040) #15	NDUFV2 (ENSPTIG00000019842) #17	ENSPTIG00000017373 #19	PTPRM (ENSPTIG00000015243) #20	LRRC30 (ENSPTIG00000000900) #21	LAMA1 (ENSPTIG00000011371) #22
Cat	MODERN SPECIES	243	NAPG (ENSFCAG00000031754)	APCDD1 (ENSFCAG00000021944)	VAPA (ENSFCAG00000022314) #7	TXNDC2 (ENSFCAG00000041623) #8	RAB31 (ENSFCAG00000044912) #9	PPP4R1 (ENSFCAG00000003997) #10	RALBP1 (ENSFCAG00000023203) #12	ENSFCAG00000047199	TWSG1 (ENSFCAG00000024696) #13	ANKRD12 (ENSFCAG00000043867) #15	NDUFV2 (ENSFCAG00000036877) #17	MTCL1 (ENSFCAG00000005803) #18	RAB12 (ENSFCAG00000027710) #19	PTPRM (ENSFCAG00000013023) #20	LRRC30 (ENSFCAG00000003109) #21	LAMA1 (ENSFCAG00000008650) #22	ARHGAP28 (ENSFCAG00000015368) #25	L3MBTL4 (ENSFCAG00000031842)	TMEM200C (ENSFCAG00000043742)	EPB41L3 (ENSFCAG00000011079)	ZBTB14 (ENSFCAG00000023573)	AKAIN1 (ENSFCAG00000041689)	DLGAP1 (ENSFCAG00000011418)	ENSFCAG00000047431	TGIF1 (ENSFCAG00000029898)	MYL12A (ENSFCAG00000022871)	MYOM1 (ENSFCAG00000001020)	LPIN2 (ENSFCAG00000027974)	EMILIN2 (ENSFCAG00000027624)	SMCHD1 (ENSFCAG00000029639)	NDC80 (ENSFCAG00000030389)
Laurasiatheria_c	ANCESTRAL SPECIES	24	ENSGT00390000005826.b	ENSGT00640000091492.a	ENSGT00940000154799 #7	ENSGT00940000163147 #8	ENSGT00940000155702 #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00910000147048 #11	ENSGT00940000154639 #12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00390000017580 #17	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00940000158264.a	ENSGT00530000063698.a.b	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00940000162721	ENSGT00940000164798	ENSGT01020000231229	ENSGT00940000162359	ENSGT00390000002886.b.b	ENSGT00390000004226	ENSGT00560000078638	ENSGT00940000156220	ENSGT00940000155230	ENSGT00940000153607.c.b
Equus	ANCESTRAL SPECIES	68	ENSGT00390000005826.b	ENSGT00640000091492.a	ENSGT00940000154799 #7	ENSGT00940000163147 #8	ENSGT00940000155702 #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00910000147048 #11	ENSGT00940000154639 #12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00390000017580 #17	ENSGT00940000159325 #19	ENSGT00940000175881	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00530000063698.a.b	ENSGT00940000157047
Horse	MODERN SPECIES	29	ENSECAG00000048178	ENSECAG00000049364	ENSECAG00000054259	ENSECAG00000043310	TWSG1 (ENSECAG00000018189) #13	ENSECAG00000046812	ANKRD12 (ENSECAG00000013901) #15	NDUFV2 (ENSECAG00000009904) #17	RAB12 (ENSECAG00000007384) #19	MTCL1 (ENSECAG00000029756)	ENSECAG00000033766	ENSECAG00000058510	PTPRM (ENSECAG00000022845) #20	LRRC30 (ENSECAG00000044023) #21	ENSECAG00000029485	LAMA1 (ENSECAG00000018061) #22	ARHGAP28 (ENSECAG00000013547) #25	TMEM200C (ENSECAG00000031743)	EPB41L3 (ENSECAG00000014474)	ENSECAG00000059945	ENSECAG00000051513	ENSECAG00000050486	ENSECAG00000058298	ANHX (ENSECAG00000013669)	ZNF268 (ENSECAG00000012298)	ENSECAG00000053544	ZNF10 (ENSECAG00000012277)	ZNF140 (ENSECAG00000041750)	ZNF84 (ENSECAG00000008278)	ZNF891 (ENSECAG00000012025)	ZNF26 (ENSECAG00000005421)
Donkey	MODERN SPECIES	27	NAPG (ENSEASG00005001265)	APCDD1 (ENSEASG00005001263)	VAPA (ENSEASG00005001256) #7	ENSEASG00005031565 #8	RAB31 (ENSEASG00005001249) #9	PPP4R1 (ENSEASG00005001236) #10	ENSEASG00005001229 #11	RALBP1 (ENSEASG00005001224) #12	ENSEASG00005001213 #13	ENSEASG00005001206 #15	NDUFV2 (ENSEASG00005001191) #17	ENSEASG00005035592 #19	ENSEASG00005002944	PTPRM (ENSEASG00005020034) #20	LRRC30 (ENSEASG00005038624) #21	LAMA1 (ENSEASG00005019622) #22	ENSEASG00005019429 #25	ENSEASG00005019406	ENSEASG00005027632	ENSEASG00005012235	IRF4 (ENSEASG00005012225)	EXOC2 (ENSEASG00005012215)	FOXF2 (ENSEASG00005012206)	ENSEASG00005031584	GMDS (ENSEASG00005012197)	MYLK4 (ENSEASG00005012193)	WRNIP1 (ENSEASG00005012190)	SERPINB1 (ENSEASG00005012189)	SERPINB9 (ENSEASG00005012183)	ENSEASG00005012179	NQO2 (ENSEASG00005012177)
Chiroptera	ANCESTRAL SPECIES	26	ENSGT00390000005826.b	ENSGT00640000091492.a	ENSGT00940000154799 #7	ENSGT00940000163147 #8	ENSGT00940000155702 #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00940000154639 #12	ENSGT00910000147048 #11	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00390000017580 #17	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00940000158264.a	ENSGT00530000063698.a.b	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00940000162721	ENSGT00940000164798	ENSGT01020000231229	ENSGT00940000162359	ENSGT00390000002886.b.b	ENSGT00390000004226	ENSGT00560000078638	ENSGT00940000156220	ENSGT00940000155230	ENSGT00940000153607.c.b
Megabat	MODERN SPECIES	3536															ENSPVAG00000001644	LAMA1 (ENSPVAG00000001641) #22	ARHGAP28 (ENSPVAG00000001634) #25
Microchiroptera	ANCESTRAL SPECIES	26	ENSGT00390000005826.b	ENSGT00640000091492.a	ENSGT00940000154799 #7	ENSGT00940000163147 #8	ENSGT00940000155702 #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00940000154639 #12	ENSGT00910000147048 #11	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00390000017580 #17	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00940000158264.a	ENSGT00530000063698.a.b	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00940000162721	ENSGT00940000164798	ENSGT01020000231229	ENSGT00940000162359	ENSGT00560000078638	ENSGT00940000156220	ENSGT00940000155230	ENSGT00940000153607.c.b	ENSGT00940000153607.d	ENSGT00940000154982
Microbat	MODERN SPECIES	995	APCDD1 (ENSMLUG00000001906)	ENSMLUG00000027481	VAPA (ENSMLUG00000008965) #7	ENSMLUG00000007658 #8	RAB31 (ENSMLUG00000013590) #9	PPP4R1 (ENSMLUG00000013859) #10	RALBP1 (ENSMLUG00000013853) #12	TWSG1 (ENSMLUG00000013848) #13	ANKRD12 (ENSMLUG00000008632) #15	NDUFV2 (ENSMLUG00000013503) #17	ENSMLUG00000013891	MTCL1 (ENSMLUG00000002889) #18	RAB12 (ENSMLUG00000002883) #19	PTPRM (ENSMLUG00000016507) #20	LRRC30 (ENSMLUG00000004630) #21	LAMA1 (ENSMLUG00000004002) #22	ARHGAP28 (ENSMLUG00000005314) #25	ENSMLUG00000023508	L3MBTL4 (ENSMLUG00000002011)	EPB41L3 (ENSMLUG00000016125)	ZBTB14 (ENSMLUG00000016123)	ENSMLUG00000030528	DLGAP1 (ENSMLUG00000012142)	TGIF1 (ENSMLUG00000025199)	MYL12B (ENSMLUG00000005189)	MYOM1 (ENSMLUG00000003417)	ENSMLUG00000029548	LPIN2 (ENSMLUG00000003403)	EMILIN2 (ENSMLUG00000003397)	SMCHD1 (ENSMLUG00000003378)	NDC80 (ENSMLUG00000003354)
Greater horseshoe bat	MODERN SPECIES	10	VAPA (ENSRFEG00010016518) #7	ENSRFEG00010016552 #8	RAB31 (ENSRFEG00010016775) #9	PPP4R1 (ENSRFEG00010016839) #10	RALBP1 (ENSRFEG00010016953) #12	ENSRFEG00010017006 #11	TWSG1 (ENSRFEG00010017042) #13	ENSRFEG00010017125	ANKRD12 (ENSRFEG00010017178) #15	NDUFV2 (ENSRFEG00010017276) #17	ENSRFEG00010017327	ENSRFEG00010010493	RAB12 (ENSRFEG00010010724) #19	PTPRM (ENSRFEG00010010873) #20	LRRC30 (ENSRFEG00010011243) #21	LAMA1 (ENSRFEG00010011271) #22	ARHGAP28 (ENSRFEG00010011354) #25	ENSRFEG00010011861	L3MBTL4 (ENSRFEG00010011944)	TMEM200C (ENSRFEG00010012187)	ENSRFEG00010012203	EPB41L3 (ENSRFEG00010012327)	ZBTB14 (ENSRFEG00010013973)	ENSRFEG00010014022	AKAIN1 (ENSRFEG00010014046)	DLGAP1 (ENSRFEG00010014146)	TGIF1 (ENSRFEG00010014659)	MYL12B (ENSRFEG00010014767)	ENSRFEG00010014795	MYOM1 (ENSRFEG00010014872)	LPIN2 (ENSRFEG00010016004)
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00940000157124 #22
Common shrew	MODERN SPECIES	215																LAMA1 (ENSSARG00000014198) #22
Hedgehog	MODERN SPECIES	565																LAMA1 (ENSEEUG00000007010) #22
Atlantogenata	ANCESTRAL SPECIES	22	ENSGT00940000154456	ENSGT00390000005826.b	ENSGT00640000091492.a	ENSGT00940000154799 #7	ENSGT00940000163147 #8	ENSGT00940000155702 #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00940000154639 #12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00390000017580 #17	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00940000158264.a	ENSGT00530000063698.a.b	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00940000156220	ENSGT00940000155230	ENSGT00940000153607.c.b	ENSGT00940000153607.c.a	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a	ENSGT00390000006950.n	ENSGT00390000018386	ENSGT00390000016237
Xenarthra	ANCESTRAL SPECIES	933																ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00940000158264.a	ENSGT00530000063698.a.b	ENSGT00940000157047
Sloth	MODERN SPECIES	415																LAMA1 (ENSCHOG00000009530) #22
Armadillo	MODERN SPECIES	2370															ENSDNOG00000011024	LAMA1 (ENSDNOG00000003351) #22	ARHGAP28 (ENSDNOG00000008802) #25	L3MBTL4 (ENSDNOG00000006559)	ENSDNOG00000046856	EPB41L3 (ENSDNOG00000003614)	ENSDNOG00000042531	ENSDNOG00000044549
Afrotheria	ANCESTRAL SPECIES	132	ENSGT00940000154456	ENSGT00390000005826.b	ENSGT00640000091492.a	ENSGT00940000154799 #7	ENSGT00940000163147 #8	ENSGT00940000155702 #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00940000154639 #12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00390000017580 #17	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22
Tenrec	MODERN SPECIES	12528																ENSETEG00000016648 #22
Afrotheria_a	ANCESTRAL SPECIES	135	ENSGT00940000154456	ENSGT00390000005826.b	ENSGT00640000091492.a	ENSGT00940000154799 #7	ENSGT00940000163147 #8	ENSGT00940000155702 #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00940000154639 #12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00390000017580 #17	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22
Elephant	MODERN SPECIES	375	NAPG (ENSLAFG00000005705)	APCDD1 (ENSLAFG00000010829)	VAPA (ENSLAFG00000008024) #7	ENSLAFG00000027236 #8	RAB31 (ENSLAFG00000014945) #9	PPP4R1 (ENSLAFG00000012326) #10	RALBP1 (ENSLAFG00000032643) #12	TWSG1 (ENSLAFG00000001054) #13	ANKRD12 (ENSLAFG00000010524) #15	NDUFV2 (ENSLAFG00000010520) #17	MTCL1 (ENSLAFG00000003048) #18	ENSLAFG00000020748 #19	ENSLAFG00000028095	PTPRM (ENSLAFG00000008057) #20	LRRC30 (ENSLAFG00000029684) #21	LAMA1 (ENSLAFG00000012697) #22	ENSLAFG00000029660	TYMS (ENSLAFG00000014910)	ENOSF1 (ENSLAFG00000014922)	YES1 (ENSLAFG00000002384)	ADCYAP1 (ENSLAFG00000014384)	METTL4 (ENSLAFG00000004505)	NDC80 (ENSLAFG00000004506)	ENSLAFG00000009375	ENSLAFG00000009381	EMILIN2 (ENSLAFG00000023146)	LPIN2 (ENSLAFG00000009393)	MYOM1 (ENSLAFG00000014655)	MYL12A (ENSLAFG00000011627)	MYL12B (ENSLAFG00000004353)	ENSLAFG00000030231
Hyrax	MODERN SPECIES	365																LAMA1 (ENSPCAG00000000638) #22
Marsupialia	ANCESTRAL SPECIES	1	ENSGT00390000005826.b.l	ENSGT00640000091492.a	ENSGT00390000015513.a.a.a.b	ENSGT01030000234979	ENSGT00940000154799 #7	ENSGT00940000155702 #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00940000154639 #12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00390000017580 #17	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00940000155020 #20	ENSGT00940000161019.b #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00940000158264.a	ENSGT00530000063698.a.b	ENSGT00940000166801	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00560000078638	ENSGT00940000156220	ENSGT00940000155230	ENSGT00940000153607.c.b	ENSGT00940000153607.c.a	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a	ENSGT00390000006950.n
Marsupialia_b	ANCESTRAL SPECIES	2	ENSGT00390000005826.b.l	ENSGT00640000091492.a	ENSGT00390000015513.a.a.a.b	ENSGT01030000234979	ENSGT00940000154799 #7	ENSGT00940000155702 #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00940000154639 #12	ENSGT00390000007058 #13	ENSGT00940000154742.a.j #15	ENSGT00390000017580 #17	ENSGT00950000182982.A #18	ENSGT00940000159325.j #19	ENSGT00940000155020 #20	ENSGT00940000161019.b #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00940000158264.a	ENSGT00530000063698.a.b	ENSGT00940000166801	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00560000078638	ENSGT00940000156220	ENSGT00940000155230	ENSGT00940000153607.c.b	ENSGT00940000153607.c.a	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a	ENSGT00390000006950.n
Diprotodontia	ANCESTRAL SPECIES	1	ENSGT00390000005826.b.l	ENSGT00640000091492.a	ENSGT00390000015513.a.a.a.b	ENSGT01030000234979	ENSGT00940000154799 #7	ENSGT00940000155702 #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00940000154639 #12	ENSGT00390000007058 #13	ENSGT00940000154742.a.j #15	ENSGT00390000017580 #17	ENSGT00950000182982.A #18	ENSGT00940000159325.j #19	ENSGT00940000155020 #20	ENSGT00940000161019.b #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00940000158264.a	ENSGT00530000063698.a.b	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00560000078638	ENSGT00940000156220	ENSGT00940000155230	ENSGT00940000153607.c.a	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a	ENSGT00390000006950.n	ENSGT00390000018386	ENSGT00390000016237
Diprotodontia_a	ANCESTRAL SPECIES		ENSGT00940000154456.a.a	ENSGT00390000005826.b.l	ENSGT00640000091492.a	ENSGT00390000015513.a.a.a.b	ENSGT00940000154799 #7	ENSGT00940000155702 #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00940000154639 #12	ENSGT00390000007058 #13	ENSGT00940000154742.a.j #15	ENSGT00390000017580 #17	ENSGT00950000182982.A #18	ENSGT00940000159325.j #19	ENSGT00940000155020 #20	ENSGT00940000161019.b #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00940000158264.a	ENSGT00530000063698.a.b	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00560000078638	ENSGT00940000156220	ENSGT00940000155230	ENSGT00940000153607.c.a	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a	ENSGT00390000006950.n	ENSGT00390000018386	ENSGT00390000016237
Common wonbat	DUPLICATION
Common wonbat	MODERN SPECIES	1048	ENSVURG00010022388	ENSVURG00010022390	ENSVURG00010022396 #7	ENSVURG00010022400 #9	ENSVURG00010022406	ENSVURG00010022412 #10	ENSVURG00010022422 #12	ENSVURG00010022425	ENSVURG00010022431 #13	ENSVURG00010022438 #15	ENSVURG00010022449 #17	ENSVURG00010022463 #18	ENSVURG00010022474 #19	ENSVURG00010022483 #20	ENSVURG00010022493 #21	ENSVURG00010022545 #22	ENSVURG00010022667 #25	ENSVURG00010022676	ENSVURG00010022705	ENSVURG00010022745	ENSVURG00010022752	ENSVURG00010022798	ENSVURG00010023018	ENSVURG00010023030	ENSVURG00010023043	ENSVURG00010023064	ENSVURG00010023083	ENSVURG00010023117	ENSVURG00010023124	ENSVURG00010023131	ENSVURG00010023135
Common wonbat	MODERN SPECIES	1199	ENSVURG00010013344	ENSVURG00010013334	ENSVURG00010013324 #7	ENSVURG00010013313	ENSVURG00010013304 #9	ENSVURG00010013286 #10	ENSVURG00010013272 #12	ENSVURG00010013266	ENSVURG00010013255 #13	ENSVURG00010013243 #15	ENSVURG00010013231 #17	ENSVURG00010013218 #18	ENSVURG00010013209 #19	ENSVURG00010013160 #20	ENSVURG00010013130 #21	ENSVURG00010012770 #22	ENSVURG00010012663 #25	ENSVURG00010012610	ENSVURG00010012515	ENSVURG00010012467	ENSVURG00010012456	ENSVURG00010011423	ENSVURG00010011329	ENSVURG00010011282	MYOM1 (ENSVURG00010011183)	ENSVURG00010011130	ENSVURG00010011114	ENSVURG00010010980	ENSVURG00010010920	ENSVURG00010010889	ENSVURG00010010870
koala	MODERN SPECIES	264															LRRC30 (ENSPCIG00000007623) #21	LAMA1 (ENSPCIG00000025035) #22	ENSPCIG00000024998 #25	L3MBTL4 (ENSPCIG00000037269)	TMEM200C (ENSPCIG00000020181)	ENSPCIG00000020168	ZBTB14 (ENSPCIG00000011912)	AKAIN1 (ENSPCIG00000011914)
Wallaby	MODERN SPECIES	1126																LAMA1 (ENSMEUG00000000373) #22
Tasmanian devil	MODERN SPECIES		PIEZO2 (ENSSHAG00000014301)	ENSSHAG00000030840	NAPG (ENSSHAG00000013907)	APCDD1 (ENSSHAG00000029831)	ENSSHAG00000012919	ENSSHAG00000028720 #9	PPP4R1 (ENSSHAG00000002365) #10	RALBP1 (ENSSHAG00000000984) #12	TWSG1 (ENSSHAG00000032243) #13	ANKRD12 (ENSSHAG00000004861) #15	NDUFV2 (ENSSHAG00000021984) #17	MTCL1 (ENSSHAG00000005041) #18	RAB12 (ENSSHAG00000030836) #19	PTPRM (ENSSHAG00000007526) #20	LRRC30 (ENSSHAG00000011744) #21	LAMA1 (ENSSHAG00000009924) #22	ENSSHAG00000009354 #25	ENSSHAG00000024209 #25	L3MBTL4 (ENSSHAG00000012679)	TMEM200C (ENSSHAG00000021490)	ENSSHAG00000028600	EPB41L3 (ENSSHAG00000007294)	AKAIN1 (ENSSHAG00000021908)	ENSSHAG00000024123	DLGAP1 (ENSSHAG00000012019)	TGIF1 (ENSSHAG00000030511)	MYL12B (ENSSHAG00000023112)	MYL12A (ENSSHAG00000025915)	MYOM1 (ENSSHAG00000008942)	LPIN2 (ENSSHAG00000007520)	EMILIN2 (ENSSHAG00000006785)
Opossum	MODERN SPECIES	2	ENSMODG00000037817	ENSMODG00000038609	ENSMODG00000021442 #7	ENSMODG00000021443 #9	PPP4R1 (ENSMODG00000021444) #10	ENSMODG00000021445 #12	TWSG1 (ENSMODG00000021446) #13	ANKRD12 (ENSMODG00000021447) #15	NDUFV2 (ENSMODG00000021448) #17	ENSMODG00000029344	MTCL1 (ENSMODG00000021451) #18	RAB12 (ENSMODG00000021452) #19	ENSMODG00000049583	PTPRM (ENSMODG00000021453) #20	ENSMODG00000024716	LAMA1 (ENSMODG00000021454) #22	ARHGAP28 (ENSMODG00000021455) #25	L3MBTL4 (ENSMODG00000021457)	TMEM200C (ENSMODG00000024724)	ENSMODG00000027341	EPB41L3 (ENSMODG00000021459)	ZBTB14 (ENSMODG00000021460)	ENSMODG00000048916	ENSMODG00000046796	ENSMODG00000043430	ENSMODG00000029291	DLGAP1 (ENSMODG00000021461)	ENSMODG00000021462	ENSMODG00000049373	MYL12B (ENSMODG00000043700)	MYL12A (ENSMODG00000049524)
Platypus	MODERN SPECIES	16	GNAL (ENSOANG00000044236)	PIEZO2 (ENSOANG00000015755)	NAPG (ENSOANG00000050761)	APCDD1 (ENSOANG00000014843)	VAPA (ENSOANG00000045710) #7	RAB31 (ENSOANG00000037899) #9	PPP4R1 (ENSOANG00000012079) #10	RALBP1 (ENSOANG00000012879) #12	TWSG1 (ENSOANG00000040519) #13	ANKRD12 (ENSOANG00000012877) #15	NDUFV2 (ENSOANG00000005310) #17	MTCL1 (ENSOANG00000015008) #18	RAB12 (ENSOANG00000038672) #19	PTPRM (ENSOANG00000002405) #20	LRRC30 (ENSOANG00000014739) #21	LAMA1 (ENSOANG00000000432) #22	ENSOANG00000000436 #25	ENSOANG00000044493 #25	L3MBTL4 (ENSOANG00000043216)	ENSOANG00000051289	ENSOANG00000041734	EPB41L3 (ENSOANG00000003826)	ZBTB14 (ENSOANG00000037703)	AKAIN1 (ENSOANG00000046211)	ENSOANG00000002065	DLGAP1 (ENSOANG00000036705)	TGIF1 (ENSOANG00000014153)	ENSOANG00000048757	MYOM1 (ENSOANG00000039529)	LPIN2 (ENSOANG00000008912)	EMILIN2 (ENSOANG00000008916)
Sauria	ANCESTRAL SPECIES		ENSGT00390000005826.b	ENSGT00640000091492.a	ENSGT01030000234979	ENSGT00940000154799 #7	ENSGT00940000155702 #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00940000154639 #12	ENSGT00910000147048 #11	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00390000017580 #17	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00530000063698.a.b	ENSGT00940000166801	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00560000078638	ENSGT00940000156220	ENSGT00940000155230	ENSGT00940000153607.c.b	ENSGT00940000153607.d	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a	ENSGT00390000006950.n	ENSGT00390000018386
Archelosauria	ANCESTRAL SPECIES	5	ENSGT00390000005826.b	ENSGT00640000091492.a	ENSGT01030000234979	ENSGT00940000154799 #7	ENSGT00940000155702 #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00910000147048 #11	ENSGT00940000154639 #12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00390000017580 #17	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00530000063698.a.b	ENSGT00940000166801	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00560000078638	ENSGT00940000156220	ENSGT00940000155230	ENSGT00940000153607.c.b	ENSGT00940000153607.d	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a	ENSGT00390000006950.n	ENSGT00390000018386
Archosauria	ANCESTRAL SPECIES		ENSGT00390000005826.b	ENSGT00640000091492.a	ENSGT01030000234979	ENSGT00940000154799 #7	ENSGT00940000155702 #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00910000147048 #11	ENSGT00940000154639 #12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00390000017580 #17	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00530000063698.a.b	ENSGT00940000166801	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00560000078638	ENSGT00940000156220	ENSGT00940000155230	ENSGT00940000153607.c.b	ENSGT00940000153607.d	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a	ENSGT00390000006950.n	ENSGT00390000018386
Aves	ANCESTRAL SPECIES	9	ENSGT00390000005826.b	ENSGT00640000091492.a	ENSGT01030000234979	ENSGT00940000154799 #7	ENSGT00940000155702 #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00910000147048 #11	ENSGT00940000154639 #12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00390000017580 #17	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00530000063698.a.b	ENSGT00940000166801	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00560000078638	ENSGT00940000156220	ENSGT00990000213402	ENSGT00940000155230	ENSGT00940000153607.c.b	ENSGT00940000153607.d	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a	ENSGT00390000006950.n
Neognathae	ANCESTRAL SPECIES		ENSGT00390000005826.b	ENSGT00640000091492.a	ENSGT01030000234979	ENSGT00940000154799 #7	ENSGT00940000155702 #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00910000147048 #11	ENSGT00940000154639 #12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00390000017580 #17	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00940000155020.f #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00530000063698.a.b	ENSGT00940000166801	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00560000078638	ENSGT00940000156220	ENSGT00990000213402	ENSGT00940000155230	ENSGT00940000153607.c.b	ENSGT00940000153607.d	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a	ENSGT00390000006950.n
Neognathae_b	ANCESTRAL SPECIES	3	ENSGT00640000091492.a	ENSGT01030000234979	ENSGT00940000154799 #7	ENSGT00940000155702 #9	ENSGT00950000183066.a.b.a.a #10	ENSGT01100000266228	ENSGT00940000154639 #12	ENSGT00910000147048 #11	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00390000017580 #17	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00940000155020.f #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00530000063698.a.b	ENSGT00940000166801	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00560000078638	ENSGT00940000156220	ENSGT00940000155230	ENSGT00940000153607.d	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a	ENSGT00390000006950.n	ENSGT00390000018386	ENSGT00390000016237
Neognathae_c	ANCESTRAL SPECIES	1	ENSGT00640000091492.a	ENSGT01030000234979	ENSGT00940000154799 #7	ENSGT00940000155702 #9	ENSGT00950000183066.a.b.a.a #10	ENSGT01100000266228	ENSGT00940000154639 #12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00390000017580 #17	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00940000155020.f #20	ENSGT00940000155020.e.a #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00530000063698.a.b	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00560000078638	ENSGT00940000156220	ENSGT00940000155230	ENSGT00940000153607.d	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a	ENSGT00390000006950.n	ENSGT00390000018386	ENSGT00390000016237	ENSGT00950000183154.b.a.b
Golden eagle	MODERN SPECIES	20	PIEZO2 (ENSACCG00020011060)	NAPG (ENSACCG00020010554)	APCDD1 (ENSACCG00020010538)	ENSACCG00020010527	VAPA (ENSACCG00020010508) #7	RAB31 (ENSACCG00020010493) #9	PPP4R1 (ENSACCG00020010427) #10	RALBP1 (ENSACCG00020010402) #12	NDUFV2 (ENSACCG00020010393) #17	ANKRD12 (ENSACCG00020010370) #15	TWSG1 (ENSACCG00020010347) #13	MTCL1 (ENSACCG00020010301) #18	RAB12 (ENSACCG00020010245) #19	PTPRM (ENSACCG00020010146) #20	LRRC30 (ENSACCG00020010026) #21	LAMA1 (ENSACCG00020010001) #22	ARHGAP28 (ENSACCG00020009953) #25	TMEM200C (ENSACCG00020009922)	EPB41L3 (ENSACCG00020008915)	ZBTB14 (ENSACCG00020007885)	AKAIN1 (ENSACCG00020007871)	DLGAP1 (ENSACCG00020007855)	TGIF1 (ENSACCG00020007830)	ENSACCG00020007822	MYOM1 (ENSACCG00020007787)	ENSACCG00020007754	LPIN2 (ENSACCG00020007735)	EMILIN2 (ENSACCG00020007675)	SMCHD1 (ENSACCG00020007610)	NDC80 (ENSACCG00020007587)	METTL4 (ENSACCG00020007504)
Kakapo	MODERN SPECIES		MBP (ENSSHBG00005002306)	ZNF236 (ENSSHBG00005002251)	ZNF516 (ENSSHBG00005002233)	TSHZ1 (ENSSHBG00005002225)	PTGR3 (ENSSHBG00005002221)	ENSSHBG00005002206	CNDP1 (ENSSHBG00005002189)	CNDP2 (ENSSHBG00005002177)	DIPK1C (ENSSHBG00005002169)	C18orf63 (ENSSHBG00005002153)	CYB5A (ENSSHBG00005002134)	TIMM21 (ENSSHBG00005000597)	FBXO15 (ENSSHBG00005000593)	ENSSHBG00005000569 #20	LRRC30 (ENSSHBG00005000506) #21	LAMA1 (ENSSHBG00005000448) #22	ARHGAP28 (ENSSHBG00005010310) #25	TMEM200C (ENSSHBG00005010241)	EPB41L3 (ENSSHBG00005010140)	ZBTB14 (ENSSHBG00005010118)	ENSSHBG00005010107	ENSSHBG00005010098	DLGAP1 (ENSSHBG00005010073)	TGIF1 (ENSSHBG00005010058)	ENSSHBG00005010016	MYOM1 (ENSSHBG00005009940)	LPIN2 (ENSSHBG00005009886)	EMILIN2 (ENSSHBG00005009847)	SMCHD1 (ENSSHBG00005009701)	NDC80 (ENSSHBG00005009637)	METTL4 (ENSSHBG00005009622)
Passeriformes	ANCESTRAL SPECIES		ENSGT00940000154456	ENSGT00390000005826.b	ENSGT00640000091492.a	ENSGT00940000154799 #7	ENSGT00940000155702 #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00940000154639 #12	ENSGT00910000147048 #11	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00390000017580 #17	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00940000155020.f #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00530000063698.a.b	ENSGT00940000166801	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00560000078638	ENSGT00940000156220	ENSGT00940000155230	ENSGT00940000153607.d	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a	ENSGT00390000006950.n	ENSGT00390000018386	ENSGT00390000016237
Great tit	MODERN SPECIES	11	GNAL (ENSPMJG00000014368)	PIEZO2 (ENSPMJG00000014371)	NAPG (ENSPMJG00000014612)	APCDD1 (ENSPMJG00000014613)	VAPA (ENSPMJG00000014615) #7	RAB31 (ENSPMJG00000014619) #9	PPP4R1 (ENSPMJG00000014620) #10	RALBP1 (ENSPMJG00000014621) #12	TWSG1 (ENSPMJG00000014623) #13	ANKRD12 (ENSPMJG00000014626) #15	NDUFV2 (ENSPMJG00000014627) #17	MTCL1 (ENSPMJG00000014629) #18	RAB12 (ENSPMJG00000014630) #19	PTPRM (ENSPMJG00000014635) #20	LRRC30 (ENSPMJG00000014646) #21	LAMA1 (ENSPMJG00000014647) #22	ARHGAP28 (ENSPMJG00000014648) #25	TMEM200C (ENSPMJG00000014650)	ENSPMJG00000014651	EPB41L3 (ENSPMJG00000014653)	ZBTB14 (ENSPMJG00000014654)	AKAIN1 (ENSPMJG00000014655)	DLGAP1 (ENSPMJG00000014657)	TGIF1 (ENSPMJG00000014660)	ENSPMJG00000014661	MYOM1 (ENSPMJG00000014662)	LPIN2 (ENSPMJG00000014663)	EMILIN2 (ENSPMJG00000014664)	ENSPMJG00000014665	ENSPMJG00000014666	METTL4 (ENSPMJG00000014667)
Passeriformes_d	ANCESTRAL SPECIES		ENSGT00940000154456	ENSGT00390000005826.b	ENSGT00640000091492.a	ENSGT00940000154799 #7	ENSGT00940000155702 #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00940000154639 #12	ENSGT00910000147048 #11	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00390000017580 #17	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00940000155020.f #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00530000063698.a.b	ENSGT00940000166801	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00560000078638	ENSGT00940000156220	ENSGT00940000155230	ENSGT00940000153607.d	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a	ENSGT00390000006950.n	ENSGT00390000018386	ENSGT00390000016237
Passeriformes_g	ANCESTRAL SPECIES	3	ENSGT00940000154456	ENSGT00390000005826.b	ENSGT00640000091492.a	ENSGT00940000154799 #7	ENSGT00940000155702 #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00940000154639 #12	ENSGT00910000147048 #11	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00390000017580 #17	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00940000155020.f #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00530000063698.a.b	ENSGT00940000166801	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00560000078638	ENSGT00940000156220	ENSGT00940000155230	ENSGT00940000153607.c.b	ENSGT00940000153607.d	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a	ENSGT00390000006950.n	ENSGT00390000018386
Passeroidea	ANCESTRAL SPECIES	2	ENSGT00940000155271	ENSGT00940000154456	ENSGT00390000005826.b	ENSGT00640000091492.a	ENSGT00940000154799 #7	ENSGT00940000155702 #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00940000154639 #12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00390000017580 #17	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00940000155020.f #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00530000063698.a.b	ENSGT00940000166801	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00560000078638	ENSGT00940000156220	ENSGT00940000155230	ENSGT00940000153607.d	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a	ENSGT00390000006950.n	ENSGT00390000018386	ENSGT00390000016237
Common canary	DUPLICATION
Common canary	MODERN SPECIES		ENSSCAG00000009093	NAPG (ENSSCAG00000009097)	APCDD1 (ENSSCAG00000009127)	VAPA (ENSSCAG00000009130) #7	RAB31 (ENSSCAG00000009138) #9	PPP4R1 (ENSSCAG00000009166) #10	RALBP1 (ENSSCAG00000009172) #12	TWSG1 (ENSSCAG00000009178) #13	ANKRD12 (ENSSCAG00000009189) #15	NDUFV2 (ENSSCAG00000009198) #17	MTCL1 (ENSSCAG00000009233) #18	RAB12 (ENSSCAG00000009254) #19	PTPRM (ENSSCAG00000009314) #20	LRRC30 (ENSSCAG00000009384) #21	ENSSCAG00000009395 #22	ENSSCAG00000009417 #22	ARHGAP28 (ENSSCAG00000009422) #25	TMEM200C (ENSSCAG00000009443)	EPB41L3 (ENSSCAG00000009458)	ZBTB14 (ENSSCAG00000009472)	ENSSCAG00000009479	DLGAP1 (ENSSCAG00000009525)	TGIF1 (ENSSCAG00000009584)	ENSSCAG00000009591	ENSSCAG00000009601	MYOM1 (ENSSCAG00000009651)	LPIN2 (ENSSCAG00000009880)	EMILIN2 (ENSSCAG00000009886)	SMCHD1 (ENSSCAG00000009893)	NDC80 (ENSSCAG00000009901)	METTL4 (ENSSCAG00000009903)
Common canary	MODERN SPECIES		PIEZO2 (ENSSCAG00000008378)	ENSSCAG00000009093	NAPG (ENSSCAG00000009097)	APCDD1 (ENSSCAG00000009127)	VAPA (ENSSCAG00000009130) #7	RAB31 (ENSSCAG00000009138) #9	PPP4R1 (ENSSCAG00000009166) #10	RALBP1 (ENSSCAG00000009172) #12	TWSG1 (ENSSCAG00000009178) #13	ANKRD12 (ENSSCAG00000009189) #15	NDUFV2 (ENSSCAG00000009198) #17	MTCL1 (ENSSCAG00000009233) #18	RAB12 (ENSSCAG00000009254) #19	PTPRM (ENSSCAG00000009314) #20	LRRC30 (ENSSCAG00000009384) #21	ENSSCAG00000009395 #22	ENSSCAG00000009417 #22	ARHGAP28 (ENSSCAG00000009422) #25	TMEM200C (ENSSCAG00000009443)	EPB41L3 (ENSSCAG00000009458)	ZBTB14 (ENSSCAG00000009472)	ENSSCAG00000009479	DLGAP1 (ENSSCAG00000009525)	TGIF1 (ENSSCAG00000009584)	ENSSCAG00000009591	ENSSCAG00000009601	MYOM1 (ENSSCAG00000009651)	LPIN2 (ENSSCAG00000009880)	EMILIN2 (ENSSCAG00000009886)	SMCHD1 (ENSSCAG00000009893)	NDC80 (ENSSCAG00000009901)
Zebra finch	MODERN SPECIES	12	MPPE1 (ENSTGUG00000009690)	GNAL (ENSTGUG00000009707)	PIEZO2 (ENSTGUG00000009724)	NAPG (ENSTGUG00000009736)	APCDD1 (ENSTGUG00000009758)	VAPA (ENSTGUG00000009765) #7	RAB31 (ENSTGUG00000029323) #9	PPP4R1 (ENSTGUG00000009787) #10	RALBP1 (ENSTGUG00000009818) #12	TWSG1 (ENSTGUG00000009833) #13	ANKRD12 (ENSTGUG00000009842) #15	NDUFV2 (ENSTGUG00000009858) #17	MTCL1 (ENSTGUG00000009883) #18	RAB12 (ENSTGUG00000009889) #19	PTPRM (ENSTGUG00000009897) #20	ENSTGUG00000024157 #22	ARHGAP28 (ENSTGUG00000009964) #25	TMEM200C (ENSTGUG00000025257)	ENSTGUG00000025068	EPB41L3 (ENSTGUG00000009980)	ZBTB14 (ENSTGUG00000026034)	AKAIN1 (ENSTGUG00000026309)	DLGAP1 (ENSTGUG00000010015)	TGIF1 (ENSTGUG00000021525)	ENSTGUG00000010026	MYOM1 (ENSTGUG00000010031)	LPIN2 (ENSTGUG00000010074)	EMILIN2 (ENSTGUG00000019550)	SMCHD1 (ENSTGUG00000010092)	NDC80 (ENSTGUG00000010126)	METTL4 (ENSTGUG00000010144)
Medium ground finch	MODERN SPECIES	146												MTCL1 (ENSGFOG00000010378) #18	RAB12 (ENSGFOG00000010370) #19	PTPRM (ENSGFOG00000010180) #20	LRRC30 (ENSGFOG00000010154) #21	LAMA1 (ENSGFOG00000010119) #22	ARHGAP28 (ENSGFOG00000010100) #25	TMEM200C (ENSGFOG00000010094)	EPB41L3 (ENSGFOG00000010041)	ZBTB14 (ENSGFOG00000010027)	AKAIN1 (ENSGFOG00000010025)
Flycatcher	MODERN SPECIES	11	PIEZO2 (ENSFALG00000006414)	NAPG (ENSFALG00000025478)	ENSFALG00000006404	VAPA (ENSFALG00000006400) #7	RAB31 (ENSFALG00000024106) #9	PPP4R1 (ENSFALG00000006386) #10	RALBP1 (ENSFALG00000006384) #12	ENSFALG00000028225 #11	TWSG1 (ENSFALG00000027520) #13	ANKRD12 (ENSFALG00000006379) #15	NDUFV2 (ENSFALG00000006374) #17	MTCL1 (ENSFALG00000006370) #18	RAB12 (ENSFALG00000023640) #19	PTPRM (ENSFALG00000006343) #20	LRRC30 (ENSFALG00000014193) #21	LAMA1 (ENSFALG00000006330) #22	ARHGAP28 (ENSFALG00000006329) #25	TMEM200C (ENSFALG00000014191)	EPB41L3 (ENSFALG00000006324)	ZBTB14 (ENSFALG00000029022)	ENSFALG00000006321	DLGAP1 (ENSFALG00000006315)	TGIF1 (ENSFALG00000025737)	ENSFALG00000028607	MYOM1 (ENSFALG00000006302)	LPIN2 (ENSFALG00000006288)	EMILIN2 (ENSFALG00000006279)	SMCHD1 (ENSFALG00000006275)	ENSFALG00000006264	METTL4 (ENSFALG00000006257)	ADCYAP1 (ENSFALG00000028660)
Galloanserae	ANCESTRAL SPECIES		ENSGT00390000005826.b	ENSGT00640000091492.a	ENSGT00940000154799 #7	ENSGT00940000155702 #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00910000147048 #11	ENSGT00940000154639 #12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00390000017580 #17	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00940000155020.f #20	ENSGT00940000164558.b	ENSGT00940000163916	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00530000063698.a.b	ENSGT00940000166801	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00560000078638	ENSGT00940000156220	ENSGT00990000213402	ENSGT00940000155230	ENSGT00940000153607.c.b	ENSGT00940000153607.d	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a	ENSGT00390000006950.n
Anatidae	ANCESTRAL SPECIES	3	ENSGT00940000154456	ENSGT00390000005826.b	ENSGT00640000091492.a	ENSGT00940000154799 #7	ENSGT00940000155702 #9	ENSGT00950000183066.a.b.a.a #10	ENSGT01100000266228	ENSGT00940000154639 #12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00390000017580 #17	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00940000155020.f #20	ENSGT00940000164558.b	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00530000063698.a.b	ENSGT00940000166801	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT01050000245099	ENSGT00560000078638	ENSGT00940000156220	ENSGT00940000155230	ENSGT00940000153607.c.b	ENSGT00940000153607.d	ENSGT00940000153607.c.a	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a
Pink-footed goose	MODERN SPECIES	139		NAPG (ENSABRG00000018525)	APCDD1 (ENSABRG00000018516)	VAPA (ENSABRG00000018514) #7	RAB31 (ENSABRG00000018512) #9	PPP4R1 (ENSABRG00000018491) #10	RALBP1 (ENSABRG00000018487) #12	TWSG1 (ENSABRG00000018483) #13	ANKRD12 (ENSABRG00000018479) #15	NDUFV2 (ENSABRG00000018476) #17	ENSABRG00000018472	ENSABRG00000018465	RAB12 (ENSABRG00000018458) #19	PTPRM (ENSABRG00000018396) #20	ENSABRG00000018371	LAMA1 (ENSABRG00000018340) #22	ARHGAP28 (ENSABRG00000018327) #25	TMEM200C (ENSABRG00000018323)	ENSABRG00000018317	EPB41L3 (ENSABRG00000018301)	ZBTB14 (ENSABRG00000018298)
Duck	MODERN SPECIES	10	PIEZO2 (ENSAPLG00000013228)	NAPG (ENSAPLG00000006422)	APCDD1 (ENSAPLG00000006589)	VAPA (ENSAPLG00000024122) #7	RAB31 (ENSAPLG00000006861) #9	PPP4R1 (ENSAPLG00000007154) #10	ENSAPLG00000024125	RALBP1 (ENSAPLG00000007469) #12	TWSG1 (ENSAPLG00000007766) #13	ANKRD12 (ENSAPLG00000024129) #15	NDUFV2 (ENSAPLG00000008082) #17	MTCL1 (ENSAPLG00000008150) #18	RAB12 (ENSAPLG00000008252) #19	PTPRM (ENSAPLG00000008518) #20	ENSAPLG00000011628	LAMA1 (ENSAPLG00000010343) #22	ARHGAP28 (ENSAPLG00000011853) #25	TMEM200C (ENSAPLG00000027090)	ENSAPLG00000025812	EPB41L3 (ENSAPLG00000012505)	ZBTB14 (ENSAPLG00000011548)	ENSAPLG00000022695	DLGAP1 (ENSAPLG00000010212)	TGIF1 (ENSAPLG00000010541)	MYL12B (ENSAPLG00000022070)	ENSAPLG00000010564	MYOM1 (ENSAPLG00000010648)	LPIN2 (ENSAPLG00000012547)	EMILIN2 (ENSAPLG00000013210)	SMCHD1 (ENSAPLG00000013237)	NDC80 (ENSAPLG00000014505)
Phasianidae	ANCESTRAL SPECIES	1	ENSGT00940000155271	ENSGT00940000154456	ENSGT00390000005826.b	ENSGT00640000091492.a	ENSGT00940000154799 #7	ENSGT00940000155702 #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00940000154639.v #12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00390000017580 #17	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00940000155020.f #20	ENSGT00940000163916	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00530000063698.a.b	ENSGT00940000166801	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00560000078638	ENSGT00940000156220	ENSGT00990000213402	ENSGT00940000155230	ENSGT00940000153607.c.b	ENSGT00940000153607.d	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a	ENSGT00390000006950.n
Phasianidae_b	ANCESTRAL SPECIES	1	ENSGT00940000154456	ENSGT00390000005826.b	ENSGT00940000153527.c.b.b.d	ENSGT00640000091492.a	ENSGT00940000154799 #7	ENSGT00940000155702 #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00940000154639.v #12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00390000017580 #17	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00940000155020.f #20	ENSGT00940000163916	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00530000063698.a.b	ENSGT00940000166801	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00560000078638	ENSGT00940000156220	ENSGT00940000155230	ENSGT00940000153607.c.b	ENSGT00940000153607.d	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a	ENSGT00390000006950.n	ENSGT00390000018386
Chicken	MODERN SPECIES	11	PIEZO2 (ENSGALG00010001666)	NAPG (ENSGALG00010001681)	ENSGALG00010001729	APCDD1 (ENSGALG00010001754)	VAPA (ENSGALG00010001749) #7	RAB31 (ENSGALG00010002357) #9	PPP4R1 (ENSGALG00010001803) #10	RALBP1 (ENSGALG00010001823) #12	TWSG1 (ENSGALG00010001836) #13	ANKRD12 (ENSGALG00010001845) #15	NDUFV2 (ENSGALG00010001849) #17	MTCL1 (ENSGALG00010001880) #18	RAB12 (ENSGALG00010001892) #19	PTPRM (ENSGALG00010001940) #20	LRRC30 (ENSGALG00010002027)	LAMA1 (ENSGALG00010001967) #22	ARHGAP28 (ENSGALG00010002017) #25	ENSGALG00010001211	TMEM200C (ENSGALG00010001172)	ENSGALG00010001175	EPB41L3 (ENSGALG00010001556)	ZBTB14 (ENSGALG00010001586)	AKAIN1 (ENSGALG00010001595)	DLGAP1 (ENSGALG00010001274)	TGIF1 (ENSGALG00010001288)	MYL12B (ENSGALG00010002352)	MYL12A (ENSGALG00010001297)	MYOM1 (ENSGALG00010001347)	LPIN2 (ENSGALG00010001279)	EMILIN2 (ENSGALG00010001313)	SMCHD1 (ENSGALG00010001364)
Turkey	MODERN SPECIES	22	ENSMGAG00000009700	ENSMGAG00000009739	SMCHD1 (ENSMGAG00000009642)	ENSMGAG00000009591	ENSMGAG00000009626	MYOM1 (ENSMGAG00000009512)	ENSMGAG00000009505	ENSMGAG00000017748	ENSMGAG00000009471	ENSMGAG00000016772	ENSMGAG00000015827	ENSMGAG00000009404	ENSMGAG00000021318	ENSMGAG00000017603	ENSMGAG00000017963	ENSMGAG00000021670 #22	ENSMGAG00000009369 #25	ENSMGAG00000015823	ENSMGAG00000009315 #20	ENSMGAG00000017771 #20	ENSMGAG00000009204	ENSMGAG00000009197 #19	ENSMGAG00000009171 #18	ENSMGAG00000009155 #17	ENSMGAG00000020695	ENSMGAG00000009143 #15	ENSMGAG00000009128 #13	ENSMGAG00000009049 #10	ENSMGAG00000009097 #12	RAB31 (ENSMGAG00000022029) #9	ENSMGAG00000009004
Japanese quail	MODERN SPECIES	11	PIEZO2 (ENSCJPG00005007948)	NAPG (ENSCJPG00005008205)	APCDD1 (ENSCJPG00005008252)	VAPA (ENSCJPG00005008261) #7	RAB31 (ENSCJPG00005008269) #9	PPP4R1 (ENSCJPG00005008271) #10	ENSCJPG00005008278 #11	ENSCJPG00005008280 #12	TWSG1 (ENSCJPG00005008281) #13	ANKRD12 (ENSCJPG00005008318) #15	NDUFV2 (ENSCJPG00005008319) #17	MTCL1 (ENSCJPG00005008322) #18	RAB12 (ENSCJPG00005008327) #19	PTPRM (ENSCJPG00005008402) #20	ENSCJPG00005008449	LAMA1 (ENSCJPG00005008450) #22	ARHGAP28 (ENSCJPG00005008455) #25	TMEM200C (ENSCJPG00005008574)	ENSCJPG00005008599	EPB41L3 (ENSCJPG00005008600)	ZBTB14 (ENSCJPG00005008602)	ENSCJPG00005008659	DLGAP1 (ENSCJPG00005008680)	ENSCJPG00005008706	TGIF1 (ENSCJPG00005008716)	ENSCJPG00005008717	MYOM1 (ENSCJPG00005008718)	ENSCJPG00005008948	ENSCJPG00005008949	EMILIN2 (ENSCJPG00005008950)	ENSCJPG00005009036
African ostrich	MODERN SPECIES	328			APCDD1 (ENSSCUG00000005637)	ENSSCUG00000005636	VAPA (ENSSCUG00000005635) #7	RAB31 (ENSSCUG00000005633) #9	PPP4R1 (ENSSCUG00000005629) #10	RALBP1 (ENSSCUG00000005627) #12	TWSG1 (ENSSCUG00000005625) #13	ANKRD12 (ENSSCUG00000005624) #15	NDUFV2 (ENSSCUG00000005623) #17	MTCL1 (ENSSCUG00000005621) #18	ENSSCUG00000005620 #19	PTPRM (ENSSCUG00000005616) #20	LRRC30 (ENSSCUG00000005611) #21	LAMA1 (ENSSCUG00000005573) #22	ARHGAP28 (ENSSCUG00000005535) #25	ENSSCUG00000005532	TMEM200C (ENSSCUG00000005530)	EPB41L3 (ENSSCUG00000005503)	ZBTB14 (ENSSCUG00000005497)	ENSSCUG00000005495	ENSSCUG00000005492	DLGAP1 (ENSSCUG00000005488)	ENSSCUG00000005485	TGIF1 (ENSSCUG00000005480)	MYL12B (ENSSCUG00000005477)	ENSSCUG00000005474	MYOM1 (ENSSCUG00000005467)	LPIN2 (ENSSCUG00000005459)	EMILIN2 (ENSSCUG00000005455)
Australian saltwater crocodile	MODERN SPECIES		ENSCPRG00005009475	ENSCPRG00005009501	APCDD1 (ENSCPRG00005009506)	VAPA (ENSCPRG00005009507) #7	RAB31 (ENSCPRG00005009524) #9	PPP4R1 (ENSCPRG00005009531) #10	ENSCPRG00005009546	RALBP1 (ENSCPRG00005009551) #12	TWSG1 (ENSCPRG00005009562) #13	ANKRD12 (ENSCPRG00005009565) #15	NDUFV2 (ENSCPRG00005009576) #17	MTCL1 (ENSCPRG00005009652) #18	RAB12 (ENSCPRG00005009666) #19	PTPRM (ENSCPRG00005009709) #20	ENSCPRG00005009745	LAMA1 (ENSCPRG00005009801) #22	ARHGAP28 (ENSCPRG00005010248) #25	TMEM200C (ENSCPRG00005010341)	EPB41L3 (ENSCPRG00005010517)	ZBTB14 (ENSCPRG00005011530)	ENSCPRG00005011531	DLGAP1 (ENSCPRG00005011650)	TGIF1 (ENSCPRG00005011653)	ENSCPRG00005011726	ENSCPRG00005011730	MYOM1 (ENSCPRG00005011737)	LPIN2 (ENSCPRG00005011838)	EMILIN2 (ENSCPRG00005011842)	SMCHD1 (ENSCPRG00005011951)	NDC80 (ENSCPRG00005012579)	METTL4 (ENSCPRG00005012598)
Cryptodira	ANCESTRAL SPECIES	7	ENSGT00940000155271	ENSGT00940000154456	ENSGT00390000005826.b	ENSGT00640000091492.a	ENSGT00940000154799 #7	ENSGT00940000155702 #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00940000154639 #12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00390000017580 #17	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00530000063698.a.b	ENSGT00940000166801	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00560000078638	ENSGT00940000156220	ENSGT00940000155230	ENSGT00940000153607.d	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a	ENSGT00390000006950.n	ENSGT00390000018386.k	ENSGT00390000016237
Testudinoidea	ANCESTRAL SPECIES		ENSGT00940000155271	ENSGT00940000154456	ENSGT00390000005826.b	ENSGT00640000091492.a	ENSGT00940000154799 #7	ENSGT00940000155702 #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00940000154639 #12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00390000017580 #17	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00530000063698.a.b	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00560000078638	ENSGT00940000156220	ENSGT00940000155230	ENSGT00940000153607.d	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a	ENSGT00390000006950.n	ENSGT00390000018386.k	ENSGT00390000016237	ENSGT00950000183154.b.a.b
Emydidae	ANCESTRAL SPECIES		ENSGT00940000155271	ENSGT00940000154456	ENSGT00390000005826.b	ENSGT00640000091492.a	ENSGT00940000154799 #7	ENSGT00940000155702 #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00940000154639 #12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00390000017580 #17	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00530000063698.a.b	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00560000078638	ENSGT00940000156220	ENSGT00940000155230	ENSGT00940000153607.d	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a	ENSGT00390000006950.n	ENSGT00390000018386.k	ENSGT00390000016237	ENSGT00950000183154.b.a.b
painted turtle	MODERN SPECIES	7	BAG4 (ENSCPBG00000006574)	ENSCPBG00000006578	DDHD2 (ENSCPBG00000006582)	PLPP5 (ENSCPBG00000006595)	NSD3 (ENSCPBG00000006622)	LETM2 (ENSCPBG00000006662)	FGFR1 (ENSCPBG00000006675)	MARCHF6 (ENSCPBG00000006716)	ENSCPBG00000006735	ENSCPBG00000006739	ENSCPBG00000006745	SBK2 (ENSCPBG00000006752)	CCT5 (ENSCPBG00000006758)	ATPSCKMT (ENSCPBG00000006764)	ENSCPBG00000006778	LAMA1 (ENSCPBG00000006787) #22	ARHGAP28 (ENSCPBG00000006810) #25	TMEM200C (ENSCPBG00000006823)	EPB41L3 (ENSCPBG00000006846)	ZBTB14 (ENSCPBG00000006929)	AKAIN1 (ENSCPBG00000006937)	DLGAP1 (ENSCPBG00000006952)	TGIF1 (ENSCPBG00000006961)	ENSCPBG00000006966	ENSCPBG00000006970	MYOM1 (ENSCPBG00000007000)	PPP1R3A (ENSCPBG00000007087)	FOXP2 (ENSCPBG00000007098)	MDFIC (ENSCPBG00000007111)	TFEC (ENSCPBG00000007125)	TES (ENSCPBG00000007139)
Three-toed box turtle	MODERN SPECIES	24	GNAL (ENSTMTG00000009478)	PIEZO2 (ENSTMTG00000009633)	NAPG (ENSTMTG00000010715)	APCDD1 (ENSTMTG00000010748)	VAPA (ENSTMTG00000010778) #7	RAB31 (ENSTMTG00000010797) #9	PPP4R1 (ENSTMTG00000010819) #10	RALBP1 (ENSTMTG00000010879) #12	TWSG1 (ENSTMTG00000010901) #13	ANKRD12 (ENSTMTG00000010924) #15	NDUFV2 (ENSTMTG00000010988) #17	MTCL1 (ENSTMTG00000011018) #18	RAB12 (ENSTMTG00000011054) #19	PTPRM (ENSTMTG00000011085) #20	LRRC30 (ENSTMTG00000011191) #21	LAMA1 (ENSTMTG00000011348) #22	ENSTMTG00000013806 #25	ENSTMTG00000013814	TMEM200C (ENSTMTG00000013816)	EPB41L3 (ENSTMTG00000014178)	ZBTB14 (ENSTMTG00000019697)	ENSTMTG00000019702	DLGAP1 (ENSTMTG00000019718)	TGIF1 (ENSTMTG00000019792)	ENSTMTG00000019802	MYOM1 (ENSTMTG00000019821)	LPIN2 (ENSTMTG00000019888)	EMILIN2 (ENSTMTG00000019915)	SMCHD1 (ENSTMTG00000020008)	NDC80 (ENSTMTG00000020470)	METTL4 (ENSTMTG00000020489)
Testudinidae	ANCESTRAL SPECIES	4	ENSGT00940000154456	ENSGT00390000005826.b	ENSGT00640000091492.a	ENSGT00940000154799 #7	ENSGT00940000155702 #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00940000154639 #12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00390000017580 #17	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00940000155020.d #20	ENSGT00940000155020.c #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00530000063698.a.b	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00560000078638	ENSGT01050000245099	ENSGT00940000156220	ENSGT00940000155230	ENSGT00940000153607.d	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a	ENSGT00390000006950.n	ENSGT00390000018386.k	ENSGT00390000016237
Goode s thornscrub tortoise	MODERN SPECIES	11	NAPG (ENSGEVG00005018499)	APCDD1 (ENSGEVG00005018582)	VAPA (ENSGEVG00005018613) #7	ENSGEVG00005018647	RAB31 (ENSGEVG00005018667) #9	PPP4R1 (ENSGEVG00005018709) #10	RALBP1 (ENSGEVG00005018755) #12	TWSG1 (ENSGEVG00005018772) #13	ANKRD12 (ENSGEVG00005018799) #15	NDUFV2 (ENSGEVG00005018841) #17	ENSGEVG00005018881 #18	RAB12 (ENSGEVG00005018901) #19	ENSGEVG00005018962 #20	ENSGEVG00005018990 #20	LRRC30 (ENSGEVG00005019064) #21	LAMA1 (ENSGEVG00005019087) #22	ARHGAP28 (ENSGEVG00005019229) #25	TMEM200C (ENSGEVG00005019313)	EPB41L3 (ENSGEVG00005019335)	ZBTB14 (ENSGEVG00005019369)	ENSGEVG00005019379	DLGAP1 (ENSGEVG00005019404)	TGIF1 (ENSGEVG00005019490)	ENSGEVG00005019498	ENSGEVG00005019502	MYOM1 (ENSGEVG00005019599)	LPIN2 (ENSGEVG00005020051)	EMILIN2 (ENSGEVG00005020109)	SMCHD1 (ENSGEVG00005020243)	NDC80 (ENSGEVG00005020277)	METTL4 (ENSGEVG00005020306)
Abingdon island giant tortoise	MODERN SPECIES	173														ENSCABG00000017236	ENSCABG00000017234	LAMA1 (ENSCABG00000017223) #22	ARHGAP28 (ENSCABG00000017218) #25
Chinese turtle	MODERN SPECIES	2237															ENSPSIG00000001677	LAMA1 (ENSPSIG00000017271) #22	ARHGAP28 (ENSPSIG00000005238) #25	TMEM200C (ENSPSIG00000001683)	ENSPSIG00000005265	EPB41L3 (ENSPSIG00000005287)	ZBTB14 (ENSPSIG00000005537)	ENSPSIG00000001687	DLGAP1 (ENSPSIG00000005548)	TGIF1 (ENSPSIG00000005650)	ENSPSIG00000005662	ENSPSIG00000005666	MYOM1 (ENSPSIG00000005684)	LPIN2 (ENSPSIG00000005769)	EMILIN2 (ENSPSIG00000006081)	SMCHD1 (ENSPSIG00000006146)	NDC80 (ENSPSIG00000006812)
Lepidosauria	ANCESTRAL SPECIES	2	ENSGT00390000005826.b	ENSGT00640000091492.a	ENSGT01030000234979	ENSGT00940000154799 #7	ENSGT00940000155702 #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00910000147048 #11	ENSGT00940000154639 #12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00390000017580 #17	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00530000063698.a.b	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT01050000245099	ENSGT00940000156220	ENSGT00940000155230	ENSGT00940000153607.d	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a	ENSGT00390000006950.n	ENSGT00390000018386	ENSGT00390000016237	ENSGT00950000183154.b.a.b
tuatara	MODERN SPECIES	1593	RALBP1 (ENSSPUG00000003301) #12	TWSG1 (ENSSPUG00000003286) #13	ENSSPUG00000003273	ENSSPUG00000003259 #15	ENSSPUG00000003252 #15	ENSSPUG00000003247 #15	NDUFV2 (ENSSPUG00000003242) #17	ENSSPUG00000003238 #18	ENSSPUG00000003233 #18	RAB12 (ENSSPUG00000003222) #19	ENSSPUG00000003205 #20	ENSSPUG00000003196 #20	ENSSPUG00000003110 #20	LRRC30 (ENSSPUG00000003097) #21	ENSSPUG00000003084	LAMA1 (ENSSPUG00000002950) #22	ARHGAP28 (ENSSPUG00000002896) #25
Episquamata	ANCESTRAL SPECIES	1	ENSGT00390000005826.b	ENSGT00640000091492.a	ENSGT01030000234979	ENSGT00940000154799 #7	ENSGT00940000155702 #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00910000147048 #11	ENSGT00940000154639 #12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00390000017580 #17	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00530000063698.a.b	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT01050000245099	ENSGT00940000156220	ENSGT00940000155230	ENSGT00940000153607.d	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a	ENSGT00390000006950.n	ENSGT00390000018386	ENSGT00390000016237	ENSGT00950000183154.b.a.b
Laterata	ANCESTRAL SPECIES	5	ENSGT00390000005826.b	ENSGT00640000091492.a	ENSGT00940000154799 #7	ENSGT00940000155702 #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00940000154639 #12	ENSGT00390000007058 #13	ENSGT00940000154742.a.h #15	ENSGT00940000154742.a.g #15	ENSGT00390000017580 #17	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00940000155020 #20	ENSGT00940000163916	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00530000063698.a.b	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT01050000245099	ENSGT00940000156220	ENSGT00940000155230	ENSGT00940000153607.d	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a	ENSGT00390000006950.n	ENSGT00390000018386	ENSGT00390000016237	ENSGT00950000183154.b.a.b
Common wall lizard	MODERN SPECIES	15	ENSPMRG00000007184	APCDD1 (ENSPMRG00000007172)	VAPA (ENSPMRG00000007162) #7	RAB31 (ENSPMRG00000007148) #9	PPP4R1 (ENSPMRG00000006707) #10	RALBP1 (ENSPMRG00000006610) #12	ENSPMRG00000006603 #15	ENSPMRG00000006590 #15	NDUFV2 (ENSPMRG00000006583) #17	MTCL1 (ENSPMRG00000006568) #18	RAB12 (ENSPMRG00000006557) #19	ENSPMRG00000006553	PTPRM (ENSPMRG00000006368) #20	ENSPMRG00000006335	LRRC30 (ENSPMRG00000006332) #21	LAMA1 (ENSPMRG00000006273) #22	ENSPMRG00000006253 #25	ENSPMRG00000006249	ENSPMRG00000006246 #25	ENSPMRG00000006240	TMEM200C (ENSPMRG00000006235)	EPB41L3 (ENSPMRG00000006201)	ZBTB14 (ENSPMRG00000006191)	ENSPMRG00000006183	DLGAP1 (ENSPMRG00000006151)	TGIF1 (ENSPMRG00000006145)	ENSPMRG00000006141	ENSPMRG00000006137	MYOM1 (ENSPMRG00000006111)	ENSPMRG00000006094	LPIN2 (ENSPMRG00000006055)
Argentine black and white tegu	MODERN SPECIES	4	VAPA (ENSSMRG00000002104) #7	RAB31 (ENSSMRG00000002095) #9	PPP4R1 (ENSSMRG00000002081) #10	RALBP1 (ENSSMRG00000000378) #12	ENSSMRG00000000346 #13	ANKRD12 (ENSSMRG00000000334) #15	ENSSMRG00000000320	ENSSMRG00000000311	ENSSMRG00000000290	NDUFV2 (ENSSMRG00000000263) #17	MTCL1 (ENSSMRG00000000059) #18	RAB12 (ENSSMRG00000000028) #19	ENSSMRG00000017150	PTPRM (ENSSMRG00000017110) #20	ENSSMRG00000017057	LAMA1 (ENSSMRG00000016637) #22	ARHGAP28 (ENSSMRG00000016636) #25	TMEM200C (ENSSMRG00000016635)	EPB41L3 (ENSSMRG00000016633)	ZBTB14 (ENSSMRG00000016632)	ENSSMRG00000016631	DLGAP1 (ENSSMRG00000016629)	ENSSMRG00000016628	TGIF1 (ENSSMRG00000016627)	ENSSMRG00000016626	MYOM1 (ENSSMRG00000016623)	LPIN2 (ENSSMRG00000016622)	EMILIN2 (ENSSMRG00000016621)	SMCHD1 (ENSSMRG00000016617)	ENSSMRG00000016615	METTL4 (ENSSMRG00000016614)
Toxicofera	ANCESTRAL SPECIES	8	ENSGT00390000005826.b	ENSGT00640000091492.a	ENSGT01030000234979	ENSGT00940000154799 #7	ENSGT00940000155702 #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00910000147048 #11	ENSGT00940000154639 #12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00390000017580 #17	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00530000063698.a.b	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT01050000245099	ENSGT00940000156220	ENSGT00940000155230	ENSGT00940000153607.d	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a	ENSGT00390000006950.n	ENSGT00390000018386	ENSGT00390000016237	ENSGT00950000183154.b.a.b
Elapidae	ANCESTRAL SPECIES	8	ENSGT00390000005826.b	ENSGT00640000091492.a	ENSGT01030000234979	ENSGT00940000154799 #7	ENSGT00940000155702 #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00910000147048 #11	ENSGT00940000154639 #12	ENSGT00390000007058 #13	ENSGT00940000154742.a.e #15	ENSGT00390000017580 #17	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00530000063698.a.b	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT01050000245099	ENSGT00940000156220	ENSGT00940000155230	ENSGT00940000153607.d	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a	ENSGT00390000006950.m.a	ENSGT00390000018386	ENSGT00390000016237	ENSGT00950000183154.b.a.b
Elapidae_a	ANCESTRAL SPECIES	14	ENSGT00390000005826.b	ENSGT00640000091492.a	ENSGT01030000234979	ENSGT00940000154799 #7	ENSGT00940000155702 #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00910000147048 #11	ENSGT00940000154639 #12	ENSGT00390000007058 #13	ENSGT00940000154742.a.e #15	ENSGT00390000017580 #17	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00530000063698.a.b	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT01050000245099	ENSGT00940000156220	ENSGT00940000155230	ENSGT00940000153607.d	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a	ENSGT00390000006950.m.a	ENSGT00390000018386	ENSGT00390000016237	ENSGT00950000183154.b.a.b
Acanthophiinae	ANCESTRAL SPECIES	16	ENSGT00390000005826.b	ENSGT00640000091492.a	ENSGT01030000234979	ENSGT00940000154799 #7	ENSGT00940000155702 #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00910000147048 #11	ENSGT00940000154639 #12	ENSGT00390000007058 #13	ENSGT00940000154742.a.e #15	ENSGT00390000017580 #17	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00530000063698.a.b	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT01050000245099	ENSGT00940000156220	ENSGT00940000155230	ENSGT00940000153607.d	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a	ENSGT00390000006950.m.a	ENSGT00390000018386	ENSGT00390000016237	ENSGT00950000183154.b.a.b
Eastern brown snake	MODERN SPECIES	11	ENSPTXG00000017020	NAPG (ENSPTXG00000017016)	APCDD1 (ENSPTXG00000017013)	VAPA (ENSPTXG00000017012) #7	RAB31 (ENSPTXG00000017009) #9	PPP4R1 (ENSPTXG00000017003) #10	ENSPTXG00000017002 #11	RALBP1 (ENSPTXG00000016997) #12	TWSG1 (ENSPTXG00000016993) #13	ANKRD12 (ENSPTXG00000016991) #15	NDUFV2 (ENSPTXG00000016989) #17	MTCL1 (ENSPTXG00000016987) #18	RAB12 (ENSPTXG00000016984) #19	PTPRM (ENSPTXG00000008487) #20	LRRC30 (ENSPTXG00000008477) #21	LAMA1 (ENSPTXG00000008476) #22	ARHGAP28 (ENSPTXG00000007868) #25	TMEM200C (ENSPTXG00000007865)	EPB41L3 (ENSPTXG00000007862)	ZBTB14 (ENSPTXG00000007859)	ENSPTXG00000007858	DLGAP1 (ENSPTXG00000007834)	TGIF1 (ENSPTXG00000007832)	ENSPTXG00000007831	MYOM1 (ENSPTXG00000007247)	LPIN2 (ENSPTXG00000007245)	EMILIN2 (ENSPTXG00000007041)	ENSPTXG00000007040	SMCHD1 (ENSPTXG00000007039)	NDC80 (ENSPTXG00000007038)	METTL4 (ENSPTXG00000007037)
Mainland tiger snake	MODERN SPECIES	40	APCDD1 (ENSNSUG00000009208)	ENSNSUG00000009207	VAPA (ENSNSUG00000009206) #7	RAB31 (ENSNSUG00000009205) #9	PPP4R1 (ENSNSUG00000008188) #10	ENSNSUG00000008187 #11	RALBP1 (ENSNSUG00000008186) #12	TWSG1 (ENSNSUG00000008185) #13	ENSNSUG00000008184 #15	ENSNSUG00000008183 #15	NDUFV2 (ENSNSUG00000008182) #17	MTCL1 (ENSNSUG00000008181) #18	RAB12 (ENSNSUG00000008180) #19	PTPRM (ENSNSUG00000008179) #20	ENSNSUG00000008177	LAMA1 (ENSNSUG00000008176) #22	ENSNSUG00000008163 #25	ENSNSUG00000008162	TMEM200C (ENSNSUG00000008159)	EPB41L3 (ENSNSUG00000008154)	ZBTB14 (ENSNSUG00000008152)	ENSNSUG00000008151	DLGAP1 (ENSNSUG00000008145)	TGIF1 (ENSNSUG00000008144)	ENSNSUG00000008143	MYOM1 (ENSNSUG00000008142)	LPIN2 (ENSNSUG00000008141)	EMILIN2 (ENSNSUG00000008072)
Blue-lipped sea krait	MODERN SPECIES	1506																ENSLLTG00000001966 #22	ENSLLTG00000001977 #25
Indian cobra	MODERN SPECIES	2	PIEZO2 (ENSNNAG00000013542)	NAPG (ENSNNAG00000015040)	APCDD1 (ENSNNAG00000015070)	VAPA (ENSNNAG00000015087) #7	ENSNNAG00000015122	RAB31 (ENSNNAG00000015134) #9	PPP4R1 (ENSNNAG00000015155) #10	RALBP1 (ENSNNAG00000015264) #12	TWSG1 (ENSNNAG00000015277) #13	ANKRD12 (ENSNNAG00000015307) #15	NDUFV2 (ENSNNAG00000015337) #17	MTCL1 (ENSNNAG00000015366) #18	RAB12 (ENSNNAG00000015414) #19	PTPRM (ENSNNAG00000015463) #20	LRRC30 (ENSNNAG00000015764) #21	LAMA1 (ENSNNAG00000015780) #22	ARHGAP28 (ENSNNAG00000015909) #25	TMEM200C (ENSNNAG00000015955)	EPB41L3 (ENSNNAG00000015972)	ZBTB14 (ENSNNAG00000015997)	ENSNNAG00000016002	DLGAP1 (ENSNNAG00000016020)	TGIF1 (ENSNNAG00000016102)	EMILIN2 (ENSNNAG00000016113)	MYOM1 (ENSNNAG00000016151)	LPIN2 (ENSNNAG00000016225)	ENSNNAG00000016346	NDC80 (ENSNNAG00000017213)	METTL4 (ENSNNAG00000017245)	ADCYAP1 (ENSNNAG00000017250)	YES1 (ENSNNAG00000017256)
Lizard	DUPLICATION
Lizard	DUPLICATION
Lizard	MODERN SPECIES	1043														ENSACAG00000010005 #20	LRRC30 (ENSACAG00000010004) #21	ENSACAG00000009954 #22	ENSACAG00000035920	ENSACAG00000036376 #22	ENSACAG00000042335 #22	ARHGAP28 (ENSACAG00000009897) #25	ENSACAG00000037468	ENSACAG00000040775
Lizard	MODERN SPECIES	1043												ENSACAG00000010005 #20	LRRC30 (ENSACAG00000010004) #21	ENSACAG00000009954 #22	ENSACAG00000035920	ENSACAG00000036376 #22	ENSACAG00000042335 #22	ARHGAP28 (ENSACAG00000009897) #25	ENSACAG00000037468	ENSACAG00000040775
Lizard	MODERN SPECIES	1043											ENSACAG00000010005 #20	LRRC30 (ENSACAG00000010004) #21	ENSACAG00000009954 #22	ENSACAG00000035920	ENSACAG00000036376 #22	ENSACAG00000042335 #22	ARHGAP28 (ENSACAG00000009897) #25	ENSACAG00000037468	ENSACAG00000040775
Anura	ANCESTRAL SPECIES	1	ENSGT00390000005826.b	ENSGT00640000091492.a	ENSGT00990000209385	ENSGT00940000154799 #7	ENSGT00940000155702 #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00940000154639 #12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00390000017580 #17	ENSGT00940000166845	ENSGT00950000182982.A #18	ENSGT00940000159325 #19	ENSGT00940000155020 #20	ENSGT00940000163916	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00530000063698.a.b	ENSGT00940000157047	ENSGT00940000158052.a	ENSGT00940000156220	ENSGT00940000155230	ENSGT00940000153607	ENSGT00940000154982	ENSGT00940000156313	ENSGT01030000234633.B.a	ENSGT00390000006950	ENSGT00390000016237	ENSGT00950000183154.b.a.b	ENSGT00940000154920	ENSGT00390000014290
Frog	MODERN SPECIES	6	ndufv2 (ENSXETG00000004051) #17	ankrd12 (ENSXETG00000004049) #15	twsg1 (ENSXETG00000037642) #13	ralbp1 (ENSXETG00000004047) #12	ppp4r1 (ENSXETG00000004042) #10	rab31 (ENSXETG00000031309) #9	vapa (ENSXETG00000004038) #7	ENSXETG00000037029	apcdd1 (ENSXETG00000026893)	ENSXETG00000047385	acss2.2 (ENSXETG00000004291)	MTCL1 (ENSXETG00000004290) #18	rab12 (ENSXETG00000004289) #19	ptprm (ENSXETG00000004287) #20	lrrc30 (ENSXETG00000025023)	lama1 (ENSXETG00000004956) #22	ENSXETG00000004957 #25	ENSXETG00000043421	tmem200c (ENSXETG00000037936)	ENSXETG00000049119	epb41l3 (ENSXETG00000004959)	zbtb14 (ENSXETG00000002279)	ENSXETG00000043658	dlgap1 (ENSXETG00000033741)	tgif1 (ENSXETG00000046401)	myl12b (ENSXETG00000025009)	myom1 (ENSXETG00000001619)	lpin2 (ENSXETG00000001617)	emilin2 (ENSXETG00000001613)	smchd1 (ENSXETG00000001609)	mettl4 (ENSXETG00000037053)
Leishan spiny toad	MODERN SPECIES	8	PPP4R1 (ENSLLEG00000022923) #10	RALBP1 (ENSLLEG00000022784) #12	ENSLLEG00000022761	ENSLLEG00000022714	TWSG1 (ENSLLEG00000022613) #13	ANKRD12 (ENSLLEG00000022517) #15	ENSLLEG00000022262 #17	ENSLLEG00000021888	MTCL1 (ENSLLEG00000021321) #18	RAB12 (ENSLLEG00000021068) #19	ENSLLEG00000021038	PTPRM (ENSLLEG00000016096) #20	ENSLLEG00000015845	ENSLLEG00000015826	ENSLLEG00000015799	LAMA1 (ENSLLEG00000015205) #22	ARHGAP28 (ENSLLEG00000014865) #25	TMEM200C (ENSLLEG00000014826)	ENSLLEG00000014770	ENSLLEG00000014682	ENSLLEG00000014630	ENSLLEG00000025986	ENSLLEG00000025963	EPB41L3 (ENSLLEG00000024445)	ZBTB14 (ENSLLEG00000024248)	ENSLLEG00000024225	ENSLLEG00000024211	ENSLLEG00000024169	DLGAP1 (ENSLLEG00000023955)	TGIF1 (ENSLLEG00000023912)	ENSLLEG00000023887
Coelacanth	MODERN SPECIES	2743																LAMA1 (ENSLACG00000000208) #22
Actinopterygii	ANCESTRAL SPECIES	150	ENSGT00640000091492.a	ENSGT00990000209385	ENSGT01030000234767	ENSGT00940000154799 #7	ENSGT00940000155702 #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00940000154639 #12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00390000017580 #17	ENSGT00940000166845	ENSGT00950000182982.A.b #18	ENSGT00940000159325 #19	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00940000158264.a	ENSGT00530000063698.a.b.c	ENSGT00940000166801	ENSGT00530000063698.a.b.d	ENSGT00940000157047	ENSGT00940000158052.a.g
Reedfish	MODERN SPECIES	14	APCDD1 (ENSECRG00000006241)	vapal (ENSECRG00000006247) #7	ENSECRG00000006255	RAB31 (ENSECRG00000006267) #9	ppp4r1 (ENSECRG00000006295) #10	ralbp1 (ENSECRG00000006339) #12	twsg1a (ENSECRG00000006349) #13	ankrd12 (ENSECRG00000006369) #15	ndufv2 (ENSECRG00000006403) #17	acss2l (ENSECRG00000006456)	ENSECRG00000006510	MTCL1 (ENSECRG00000006525) #18	rab12 (ENSECRG00000006552) #19	PTPRM (ENSECRG00000006573) #20	ENSECRG00000006622	lama1 (ENSECRG00000006648) #22	ARHGAP28 (ENSECRG00000006699) #25	L3MBTL4 (ENSECRG00000006730)	TMEM200C (ENSECRG00000006756)	ENSECRG00000006761	ENSECRG00000006768	epb41l3a (ENSECRG00000006784)	ZBTB14 (ENSECRG00000006817)	ENSECRG00000006824	dlgap1a (ENSECRG00000006841)	tgif1 (ENSECRG00000006865)	myl12.1 (ENSECRG00000006872)	myom1a (ENSECRG00000006894)	LPIN2 (ENSECRG00000006917)	EMILIN2 (ENSECRG00000006948)	SMCHD1 (ENSECRG00000006977)
Neopterygii	ANCESTRAL SPECIES	143	ENSGT00640000091492.a.d	ENSGT00990000209385	ENSGT00640000091492.a.c	ENSGT00940000154799 #7	ENSGT00940000155702 #9	ENSGT00950000183066.a.b.a.a #10	ENSGT00940000154639 #12	ENSGT00390000007058 #13	ENSGT00940000154742.a #15	ENSGT00390000017580 #17	ENSGT00940000166845	ENSGT00950000182982.A.b #18	ENSGT00940000159325 #19	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00940000158264.a	ENSGT00530000063698.a.b.c	ENSGT00940000166801	ENSGT00530000063698.a.b.d	ENSGT00940000157047	ENSGT00940000158052.a.g
Spotted gar	MODERN SPECIES	675	ENSLOCG00000002322	napga (ENSLOCG00000002353)	APCDD1 (ENSLOCG00000002365)	vapal (ENSLOCG00000002404) #7	RAB31 (ENSLOCG00000002436) #9	PPP4R1 (ENSLOCG00000002460) #10	ralbp1 (ENSLOCG00000002522) #12	twsg1a (ENSLOCG00000002541) #13	ankrd12 (ENSLOCG00000002556) #15	ndufv2 (ENSLOCG00000002593) #17	acss2l (ENSLOCG00000002610)	MTCL1 (ENSLOCG00000002658) #18	rab12 (ENSLOCG00000002680) #19	PTPRM (ENSLOCG00000002692) #20	lrrc30a (ENSLOCG00000002842) #21	lama1 (ENSLOCG00000002854) #22	ARHGAP28 (ENSLOCG00000002975) #25	L3MBTL4 (ENSLOCG00000003008)	TMEM200C (ENSLOCG00000003032)	ENSLOCG00000003043	epb41l3b (ENSLOCG00000003075)	ZBTB14 (ENSLOCG00000017810)	dlgap1a (ENSLOCG00000003107)	tgif1 (ENSLOCG00000003162)	ptf1a (ENSLOCG00000003186)	ENSLOCG00000003208	OTUD1 (ENSLOCG00000003243)	KIAA1217 (ENSLOCG00000003260)	ARHGAP21 (ENSLOCG00000003296)	prtfdc1b (ENSLOCG00000003364)	ENSLOCG00000003406
Osteoglossocephalai	ANCESTRAL SPECIES	254					ENSGT00940000154992.a.a	ENSGT01100000263681	ENSGT00940000160677	ENSGT00940000156210.d	ENSGT01000000214434.D	ENSGT00940000174963	ENSGT00390000010557	ENSGT00940000159301	ENSGT00940000165403	ENSGT00940000155020 #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00950000183019.f.a.c.a	ENSGT00940000158227	ENSGT00940000155281	ENSGT00940000166821.a	ENSGT00390000020445	ENSGT00940000158304	ENSGT00940000156280.a.b
Osteoglossiformes	DUPLICATION
Osteoglossiformes	ANCESTRAL SPECIES	218	ENSGT00940000154621.a.b.b.b	ENSGT00940000154607.b.b	ENSGT00940000158377.b.i.b	ENSGT00530000063779.B.a	ENSGT00950000183072.a.a.a	ENSGT00390000008686.c.c	ENSGT00920000149157	ENSGT01100000264618	ENSGT00940000154992.a.a.e	ENSGT00940000156210.c	ENSGT00940000161049	ENSGT00940000159301.b	ENSGT00940000165403	ENSGT00940000155020.s #20	ENSGT00940000177454	ENSGT00940000157124.a #22	ENSGT00940000158929.m #25	ENSGT00940000158264.a.a	ENSGT00530000063698.a.b.c	ENSGT00940000157047.k.a	ENSGT00940000158052.a.g
Asian bonytongue	MODERN SPECIES	22	map3k22 (ENSSFOG00015000353)	oxsr1a (ENSSFOG00015000285)	ENSSFOG00015000129	xirp1 (ENSSFOG00015023838)	csrnp1b (ENSSFOG00015024752)	gorasp1a (ENSSFOG00015023816)	wdr48b (ENSSFOG00015023810)	ENSSFOG00015030878	scn12aa (ENSSFOG00015023802)	ACVR2B (ENSSFOG00015023798)	WDR86 (ENSSFOG00015023794)	ENSSFOG00015024720	ENSSFOG00015023790	PTPRM (ENSSFOG00015023781) #20	ENSSFOG00015023778	lama1 (ENSSFOG00015023767) #22	ENSSFOG00015032940	ARHGAP28 (ENSSFOG00015023762) #25	L3MBTL4 (ENSSFOG00015023758)	TMEM200C (ENSSFOG00015023751)	epb41l3b (ENSSFOG00015012844)	zbtb14 (ENSSFOG00015013037)	APCDD1 (ENSSFOG00015031302)	ENSSFOG00015013094	vapal (ENSSFOG00015013064) #7	RAB31 (ENSSFOG00015033241) #9	ralbp1 (ENSSFOG00015013129) #12	twsg1a (ENSSFOG00015033116) #13	ankrd12 (ENSSFOG00015013199) #15	ndufv2 (ENSSFOG00015013251) #17	acss2l (ENSSFOG00015013300)
P. kingsleyae	MODERN SPECIES	199	ENSPKIG00000014658	oxsr1a (ENSPKIG00000014520)	ENSPKIG00000014445	ENSPKIG00000014432	xirp1 (ENSPKIG00000014417)	csrnp1b (ENSPKIG00000014397)	gorasp1a (ENSPKIG00000014356)	wdr48b (ENSPKIG00000014276)	ENSPKIG00000014233	scn12aa (ENSPKIG00000014181)	ACVR2B (ENSPKIG00000014125)	WDR86 (ENSPKIG00000014071)	CRYGN (ENSPKIG00000014021)	ENSPKIG00000013982	PTPRM (ENSPKIG00000013882) #20	lama1 (ENSPKIG00000013642) #22	ARHGAP28 (ENSPKIG00000013524) #25	L3MBTL4 (ENSPKIG00000013455)
Osteoglossiformes	ANCESTRAL SPECIES	295						ENSGT00940000154992.a.a.f	ENSGT01100000263681	ENSGT00940000160677	ENSGT00940000156210.d	ENSGT01000000214434.D	ENSGT00940000174963	ENSGT00390000010557	ENSGT00940000159301.a	ENSGT00940000155020.t #20	ENSGT00940000161019 #21	ENSGT00940000157124.b #22	ENSGT00940000158929.n #25	ENSGT00940000158264.a.b	ENSGT00940000157047.k.b	ENSGT00940000155006.f	ENSGT00940000154799.b #7	ENSGT01030000234767.a.a	ENSGT00940000154799.a.b #7	ENSGT00950000183066.a.b.a.a #10
P. kingsleyae	DUPLICATION
P. kingsleyae	DUPLICATION
P. kingsleyae	MODERN SPECIES	20				SCN10A (ENSPKIG00000002070)	ENSPKIG00000002313	EXOG (ENSPKIG00000002329)	acvr2ba (ENSPKIG00000002363)	xylb (ENSPKIG00000002438)	ENSPKIG00000002525	ENSPKIG00000002539	CRYGN (ENSPKIG00000002566)	PTPRM (ENSPKIG00000002591) #20	lrrc30a (ENSPKIG00000002651) #21	ENSPKIG00000002665 #22	ENSPKIG00000002689 #22	ENSPKIG00000002718 #22	ENSPKIG00000002752 #25	L3MBTL4 (ENSPKIG00000002776)	ENSPKIG00000002835	top1mt (ENSPKIG00000002868)	APCDD1 (ENSPKIG00000002906)	ENSPKIG00000002935	vapal (ENSPKIG00000002952) #7	ppp4r1 (ENSPKIG00000002980) #10	RALBP1 (ENSPKIG00000003030) #12	clocka (ENSPKIG00000003050)	tmem165 (ENSPKIG00000003086)	srd5a3 (ENSPKIG00000003108)	kdr (ENSPKIG00000003143)	kitb (ENSPKIG00000003235)	ENSPKIG00000003262
P. kingsleyae	MODERN SPECIES	20						SCN10A (ENSPKIG00000002070)	ENSPKIG00000002313	EXOG (ENSPKIG00000002329)	acvr2ba (ENSPKIG00000002363)	xylb (ENSPKIG00000002438)	ENSPKIG00000002525	ENSPKIG00000002539	CRYGN (ENSPKIG00000002566)	PTPRM (ENSPKIG00000002591) #20	lrrc30a (ENSPKIG00000002651) #21	ENSPKIG00000002665 #22	ENSPKIG00000002689 #22	ENSPKIG00000002718 #22	ENSPKIG00000002752 #25	L3MBTL4 (ENSPKIG00000002776)	ENSPKIG00000002835	top1mt (ENSPKIG00000002868)	APCDD1 (ENSPKIG00000002906)	ENSPKIG00000002935	vapal (ENSPKIG00000002952) #7	ppp4r1 (ENSPKIG00000002980) #10	RALBP1 (ENSPKIG00000003030) #12	clocka (ENSPKIG00000003050)	tmem165 (ENSPKIG00000003086)	srd5a3 (ENSPKIG00000003108)	kdr (ENSPKIG00000003143)
P. kingsleyae	MODERN SPECIES	20					SCN10A (ENSPKIG00000002070)	ENSPKIG00000002313	EXOG (ENSPKIG00000002329)	acvr2ba (ENSPKIG00000002363)	xylb (ENSPKIG00000002438)	ENSPKIG00000002525	ENSPKIG00000002539	CRYGN (ENSPKIG00000002566)	PTPRM (ENSPKIG00000002591) #20	lrrc30a (ENSPKIG00000002651) #21	ENSPKIG00000002665 #22	ENSPKIG00000002689 #22	ENSPKIG00000002718 #22	ENSPKIG00000002752 #25	L3MBTL4 (ENSPKIG00000002776)	ENSPKIG00000002835	top1mt (ENSPKIG00000002868)	APCDD1 (ENSPKIG00000002906)	ENSPKIG00000002935	vapal (ENSPKIG00000002952) #7	ppp4r1 (ENSPKIG00000002980) #10	RALBP1 (ENSPKIG00000003030) #12	clocka (ENSPKIG00000003050)	tmem165 (ENSPKIG00000003086)	srd5a3 (ENSPKIG00000003108)	kdr (ENSPKIG00000003143)	kitb (ENSPKIG00000003235)
Asian bonytongue	MODERN SPECIES	10	avl9 (ENSSFOG00015010037)	lsm5 (ENSSFOG00015025687)	RNF31 (ENSSFOG00015010121)	irf9 (ENSSFOG00015010147)	ENSSFOG00015010162	ENSSFOG00015010187	ENSSFOG00015032454	GPT (ENSSFOG00015010217)	foxh1 (ENSSFOG00015010282)	oplah (ENSSFOG00015010333)	xylb (ENSSFOG00015010417)	NUB1 (ENSSFOG00015010430)	crygn1 (ENSSFOG00015010440)	PTPRM (ENSSFOG00015010468) #20	ENSSFOG00015010548	lama1 (ENSSFOG00015032690) #22	ENSSFOG00015010650	top1mt (ENSSFOG00015010700)	ENSSFOG00015010866 #7	ENSSFOG00015010883	ppp4r1 (ENSSFOG00015010949) #10	ENSSFOG00015027232 ##18	napga (ENSSFOG00015011101)	ENSSFOG00015011144	ENSSFOG00015011343	impa2 (ENSSFOG00015011629)	mppe1 (ENSSFOG00015011651)	gnal (ENSSFOG00015011854)	elovl2 (ENSSFOG00015011890)	gcm2 (ENSSFOG00015028312)	tmem14ca (ENSSFOG00015011951)
Clupeocephala	ANCESTRAL SPECIES	375														ENSGT00940000155020.u.b #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00940000158264.a	ENSGT00530000063698.a.b.c	ENSGT00940000157047.m.b	ENSGT00940000158052.a.g	ENSGT00940000155006.f	ENSGT00640000091492.a.c	ENSGT00990000209385	ENSGT00950000183066.a.b.a.a #10
Otomorpha	ANCESTRAL SPECIES	183	ENSGT00390000005979.a	ENSGT00390000008686.c.d	ENSGT00920000149157.d	ENSGT00940000163423.C.h	ENSGT01100000263681	ENSGT00940000154992.a.b	ENSGT00940000160677	ENSGT00940000156210.d	ENSGT01000000214434.D	ENSGT00940000174963	ENSGT00390000010557	ENSGT00940000159301.c.a	ENSGT00940000165403	ENSGT00940000155020.u.a.b #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00940000158264.a	ENSGT00530000063698.a.b.c	ENSGT00940000157047.m.b
Clupeiformes	ANCESTRAL SPECIES	89	ENSGT00940000156390	ENSGT00400000022103.a	ENSGT00940000155450.d	ENSGT00390000009127	ENSGT00950000182881.a.a.a	ENSGT00940000156056.B.c.b	ENSGT00950000182910.a.b.b	ENSGT00940000164265.C	ENSGT00390000010557	ENSGT00940000159301.c.a	ENSGT00940000165403	ENSGT00940000155020.u.a.b #20	ENSGT00940000161019 #21	ENSGT00940000165300.a	ENSGT00940000163916	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00940000158264.a	ENSGT00530000063698.a.b.c	ENSGT00940000157047.m.b	ENSGT00940000158052.a.g	ENSGT00940000155006.f	ENSGT00640000091492.a.c	ENSGT00390000005826.b.e	ENSGT00940000154456.hb.b	ENSGT00940000160536	ENSGT00390000013236	ENSGT00940000155271	ENSGT01050000244838.C.a	ENSGT00390000006777.b	ENSGT00940000156581.h.a
Atlantic herring	MODERN SPECIES	8	ENSCHAG00000007752	ENSCHAG00000007810	ssr1 (ENSCHAG00000007847)	ENSCHAG00000008203	rmc1 (ENSCHAG00000016946)	ENSCHAG00000017102	ENSCHAG00000017127	ENSCHAG00000017146	tmeff1b (ENSCHAG00000017164)	cavin4b (ENSCHAG00000017170)	ENSCHAG00000017198	ENSCHAG00000018825	crygn2 (ENSCHAG00000018839)	PTPRM (ENSCHAG00000019218) #20	ENSCHAG00000025463	lama1 (ENSCHAG00000025578) #22	ARHGAP28 (ENSCHAG00000026980) #25	L3MBTL4 (ENSCHAG00000026990)	TMEM200C (ENSCHAG00000026999)	epb41l3a (ENSCHAG00000027024)	zbtb14 (ENSCHAG00000027278)	top1mt (ENSCHAG00000027291)	ENSCHAG00000027348	VAPA (ENSCHAG00000027351) #7	ENSCHAG00000027353	gcm2 (ENSCHAG00000027360)	napga (ENSCHAG00000027361)	ENSCHAG00000027424	psme1 (ENSCHAG00000027548)	ENSCHAG00000027550	ENSCHAG00000027572
Denticle herring	MODERN SPECIES	11	MSC (ENSDCDG00000030487)	eya1 (ENSDCDG00000028283)	xkr9 (ENSDCDG00000028233)	tram1 (ENSDCDG00000028230)	ncoa2 (ENSDCDG00000028223)	prdm14 (ENSDCDG00000028213)	SLCO5A1 (ENSDCDG00000028211)	ENSDCDG00000028097	tmeff1b (ENSDCDG00000028080)	cavin4b (ENSDCDG00000028078)	ENSDCDG00000027986	crygn2 (ENSDCDG00000027976)	ENSDCDG00000027975	PTPRM (ENSDCDG00000016924) #20	lrrc30a (ENSDCDG00000016720) #21	lama1 (ENSDCDG00000014515) #22	ARHGAP28 (ENSDCDG00000013565) #25	L3MBTL4 (ENSDCDG00000013516)	TMEM200C (ENSDCDG00000013425)	epb41l3a (ENSDCDG00000004806)	zbtb14 (ENSDCDG00000004679)	ENSDCDG00000004394	ENSDCDG00000004383	ENSDCDG00000004382	VAPA (ENSDCDG00000004381) #7	PPP4R1 (ENSDCDG00000003261) #10	TWSG1 (ENSDCDG00000002956) #13	napga (ENSDCDG00000002787)	PIEZO2 (ENSDCDG00000002623)	impa2 (ENSDCDG00000002596)	mppe1 (ENSDCDG00000002593)
Otophysi	ANCESTRAL SPECIES	126	ENSGT01030000234528.B.b.a.a.b	ENSGT00390000005979.a	ENSGT00390000008686.c.d	ENSGT00920000149157.d	ENSGT00940000163423.C.h	ENSGT00940000154992.a.b	ENSGT00940000160677	ENSGT00940000156210.d	ENSGT01000000214434.D	ENSGT00940000174963	ENSGT00390000010557	ENSGT00940000159301.c.a	ENSGT00940000165403	ENSGT00940000155020.u.a.b #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00940000158264.a	ENSGT00530000063698.a.b.c	ENSGT00940000157047.m.b	ENSGT00940000158052.a.g	ENSGT00940000167650	ENSGT00990000209385
Characiphysae	ANCESTRAL SPECIES		ENSGT00940000160959	ENSGT00940000167861	ENSGT01030000234528.B.b.a.a.b	ENSGT00390000005979.a	ENSGT00920000149157.d	ENSGT00940000154992.a.b	ENSGT00940000160677	ENSGT00940000156210.d	ENSGT01000000214434.D	ENSGT00940000174963	ENSGT00390000010557	ENSGT00940000159301.c.a	ENSGT00940000165403	ENSGT00940000155020.u.a.b #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00940000158264.a	ENSGT00530000063698.a.b.c	ENSGT00940000157047.m.b	ENSGT00940000158052.a.g	ENSGT00940000167650	ENSGT00640000091492.a.c	ENSGT00940000154799 #7	ENSGT00950000183066.a.b.a.a #10	ENSGT00940000164430.a.b.b	ENSGT00400000022103.a.g	ENSGT00450000040262.i	ENSGT00940000165572	ENSGT00550000074892	ENSGT00390000014244
Channel catfish	MODERN SPECIES		ENSIPUG00000024773	ttc21a (ENSIPUG00000024770)	wdr48 (ENSIPUG00000024758)	scn5lab (ENSIPUG00000024742)	exog (ENSIPUG00000024721)	acvr2b (ENSIPUG00000024714)	ENSIPUG00000024709	xylb (ENSIPUG00000024699)	ENSIPUG00000024584	ENSIPUG00000024578	ENSIPUG00000024574	crygn2 (ENSIPUG00000024570)	ENSIPUG00000024568	Ptprm (ENSIPUG00000024537) #20	ENSIPUG00000024517	lama1 (ENSIPUG00000024514) #22	ENSIPUG00000024513 #25	L3MBTL4 (ENSIPUG00000024456)	tmem200c (ENSIPUG00000024455)	epb41l3a (ENSIPUG00000024443)	ENSIPUG00000024435	ZBTB14 (ENSIPUG00000024433)	ENSIPUG00000024429	apcdd1 (ENSIPUG00000024428)	vapa (ENSIPUG00000024426) #7	ppp4r1 (ENSIPUG00000024324) #10	TWSG1 (ENSIPUG00000024320) #13	ssr1 (ENSIPUG00000024317)	ENSIPUG00000024316	ENSIPUG00000024314	prune1 (ENSIPUG00000024312)
Characiphysae_b	ANCESTRAL SPECIES	2	ENSGT00940000160959	ENSGT00940000167861	ENSGT01030000234528.B.b.a.a.b	ENSGT00390000005979.a	ENSGT00920000149157.d	ENSGT00940000154992.a.b	ENSGT00940000160677	ENSGT00940000156210.d	ENSGT01000000214434.D	ENSGT00940000174963	ENSGT00390000010557	ENSGT00940000159301.c.a	ENSGT00940000165403	ENSGT00940000155020.u.a.b #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00940000158264.a	ENSGT00530000063698.a.b.c	ENSGT00940000157047.m.b	ENSGT00940000158052.a.g	ENSGT00940000167650	ENSGT00640000091492.a.c	ENSGT00940000154799 #7	ENSGT01030000234767.b.b	ENSGT00950000183066.a.b.a.a #10	ENSGT00940000164430.a.b.b	ENSGT00400000022103.a.g	ENSGT01100000263505.b.b.a.a.a.a.b.a	ENSGT00450000040262.i	ENSGT00940000165572
Characoidei	ANCESTRAL SPECIES	95	ENSGT00940000160959	ENSGT00940000167861	ENSGT01030000234528.B.b.a.a.b	ENSGT00390000005979.a	ENSGT00920000149157.d	ENSGT00940000154992.a.b	ENSGT00940000160677	ENSGT00940000156210.d	ENSGT01000000214434.D	ENSGT00940000174963	ENSGT00390000010557	ENSGT00940000159301.c.a	ENSGT00940000165403	ENSGT00940000155020.u.a.b #20	ENSGT00940000161019.`c #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00940000158264.a	ENSGT00530000063698.a.b.c	ENSGT00940000157047.m.b	ENSGT00940000158052.a.g	ENSGT00940000167650	ENSGT00640000091492.a.c	ENSGT00940000154799 #7	ENSGT01030000234767.b.b	ENSGT00950000183066.a.b.a.a #10	ENSGT00940000164430.a.b.b.a	ENSGT00400000022103.a.g	ENSGT01100000263505.b.b.a.a.a.a.b.a	ENSGT00450000040262.i	ENSGT00940000165572
Red-bellied piranha	MODERN SPECIES	123									xylb (ENSPNAG00000026809)	ENSPNAG00000026737	ENSPNAG00000026720	crygn2 (ENSPNAG00000004729)	ENSPNAG00000004728	PTPRM (ENSPNAG00000026591) #20	lrrc30a (ENSPNAG00000005893) #21	lama1 (ENSPNAG00000025967) #22	ARHGAP28 (ENSPNAG00000007129) #25	L3MBTL4 (ENSPNAG00000025642)	TMEM200C (ENSPNAG00000025590)	epb41l3a (ENSPNAG00000005092)	zbtb14 (ENSPNAG00000025465)	ENSPNAG00000025450	ENSPNAG00000003910	VAPA (ENSPNAG00000025360) #7	ENSPNAG00000025299	ppp4r1 (ENSPNAG00000025272) #10	TWSG1 (ENSPNAG00000025247) #13	ENSPNAG00000025130	ssr1 (ENSPNAG00000025080)	ENSPNAG00000005946	prune (ENSPNAG00000025015)
Mexicana tetra	MODERN SPECIES	1	ENSAMXG00000042181	etfb (ENSAMXG00000042160)	ENSAMXG00000036279	ENSAMXG00000035808	lim2.5 (ENSAMXG00000009562)	ENSAMXG00000043716	ENSAMXG00000033097	ENSAMXG00000002408	ENSAMXG00000002707	ENSAMXG00000032488	ENSAMXG00000033376	ENSAMXG00000029130	tssk6 (ENSAMXG00000025084)	PTPRM (ENSAMXG00000018077) #20	lrrc30a (ENSAMXG00000031926) #21	lama1 (ENSAMXG00000018112) #22	ARHGAP28 (ENSAMXG00000018184) #25	L3MBTL4 (ENSAMXG00000018187)	selenbp1 (ENSAMXG00000032326)	pi4kb (ENSAMXG00000021819)	myo1eb (ENSAMXG00000021820)	prune (ENSAMXG00000034359)	ENSAMXG00000037631	SSR1 (ENSAMXG00000033224)	ENSAMXG00000021825	ENSAMXG00000021826	dnali1 (ENSAMXG00000033147)	TWSG1 (ENSAMXG00000012010) #13	ppp4r1 (ENSAMXG00000021829) #10	ENSAMXG00000029330	VAPA (ENSAMXG00000021830) #7
Electric eel	MODERN SPECIES	5									xylb (ENSEEEG00000002955)	ENSEEEG00000002946	ENSEEEG00000002944	crygn2 (ENSEEEG00000002942)	ENSEEEG00000002939	PTPRM (ENSEEEG00000000902) #20	ENSEEEG00000000631	lama1 (ENSEEEG00000000421) #22	ARHGAP28 (ENSEEEG00000000311) #25	L3MBTL4 (ENSEEEG00000000301)	TMEM200C (ENSEEEG00000000249)	epb41l3a (ENSEEEG00000000165)	zbtb14 (ENSEEEG00000000054)	ENSEEEG00000000041	ENSEEEG00000000034	ENSEEEG00000023320	VAPA (ENSEEEG00000023318) #7	ppp4r1 (ENSEEEG00000023110) #10	TWSG1 (ENSEEEG00000023097) #13	ssr1 (ENSEEEG00000023096)	ENSEEEG00000023095	prune (ENSEEEG00000023092)	myo1eb (ENSEEEG00000023089)
Cyprinoidei	ANCESTRAL SPECIES	90	ENSGT00390000005979.a	ENSGT00390000008686.c.d	ENSGT00920000149157.d	ENSGT00940000163423.C.h	ENSGT00940000154992.a.b	ENSGT00940000160677	ENSGT00940000156210.d	ENSGT01000000214434.D	ENSGT00390000010557	ENSGT00940000159301.c.a	ENSGT00940000165403	ENSGT00940000155020.u.a.a.a #20	ENSGT00940000177454	ENSGT00940000155020.u.a.b #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00940000158264.a	ENSGT00530000063698.a.b.c	ENSGT00940000157047.m.b
Cyprininae	ANCESTRAL SPECIES	226	ENSGT00920000149157.d.c.a	ENSGT00940000154992.a.b.e	ENSGT00940000156210.d.b	ENSGT00920000149157.d.d	ENSGT00940000154992.a.b.f	ENSGT00940000160677	ENSGT00940000156210.d.a	ENSGT01000000214434.D	ENSGT00390000010557.p	ENSGT00940000159301.c.a	ENSGT00940000165403	ENSGT00940000155020.u.a.a.a.b #20	ENSGT00940000161019 #21	ENSGT00940000158929.o #25	ENSGT00940000177454	ENSGT00940000157124 #22	ENSGT00940000158929.p #25	ENSGT00940000158264.a	ENSGT00530000063698.a.b.c	ENSGT00940000157047.m.b.a	ENSGT00940000157047.m.b.b	ENSGT00940000158052.a.g	ENSGT00940000167650	ENSGT00990000209385	ENSGT00940000155006.f	ENSGT00640000091492.a.c	ENSGT00940000154799.r #7	ENSGT00950000183066.a.b.a.a #10	ENSGT00390000007058.f #13	ENSGT00940000164430.a.b.b	ENSGT00400000022103.a
Goldfish	MODERN SPECIES	58	scn5lab (ENSCARG00000061875)	EXOG (ENSCARG00000061833)	acvr2ba (ENSCARG00000061469)	ENSCARG00000061411	ENSCARG00000061325	ENSCARG00000061252	ENSCARG00000061231	ENSCARG00000061185	ENSCARG00000061166	ENSCARG00000061120	ENSCARG00000061066	xylb (ENSCARG00000060858)	crygn2 (ENSCARG00000060803)	ENSCARG00000060785	PTPRM (ENSCARG00000046051) #20	lama1 (ENSCARG00000045085) #22	ENSCARG00000045058	zgc:162895 (ENSCARG00000045017)	ENSCARG00000044978	ENSCARG00000044835	ssr1 (ENSCARG00000044788)	ENSCARG00000044769	TWSG1 (ENSCARG00000044750) #13	ppp4r1 (ENSCARG00000043253) #10	ENSCARG00000043117 #7	ENSCARG00000043108	zbtb14 (ENSCARG00000043095)	epb41l3a (ENSCARG00000042206)	TMEM200C (ENSCARG00000042103)	ENSCARG00000042091	L3MBTL4 (ENSCARG00000041992)
Cyprininae_a	ANCESTRAL SPECIES	288	ENSGT00940000159846.a.b.c.b	ENSGT00940000159742.sb.r	ENSGT00940000167861	ENSGT00920000149157.d.c.a	ENSGT00940000154992.a.b.f	ENSGT00940000160677	ENSGT00940000156210.d.a	ENSGT01090000260029.a.b.b.b.a.a.b.b.a.a.b.b.b.a	ENSGT01000000214434.D	ENSGT00390000010557.p	ENSGT00940000159301.d	ENSGT00940000165403.c	ENSGT00940000155020.u.a.a.a.b #20	ENSGT00940000161019 #21	ENSGT00940000177454	ENSGT00940000157124 #22	ENSGT00940000158929.p #25	ENSGT00940000158264.a	ENSGT00530000063698.a.b.c	ENSGT00940000157047.m.b.a	ENSGT00940000157047.m.b.b	ENSGT00940000158052.a.g	ENSGT00640000091492.a.c	ENSGT00940000154799.r #7	ENSGT00950000183066.a.b.a.a #10	ENSGT00390000007058.f #13	ENSGT00940000164430.a.b.b	ENSGT00400000022103.a	ENSGT00940000156390	ENSGT00940000154775.c.b.c.b.a	ENSGT00940000161026.i
Common carp reference	MODERN SPECIES	14	WDR48 (ENSCCRG00000028696)	ENSCCRG00000063657	scn5lab (ENSCCRG00000078504)	EXOG (ENSCCRG00000045254)	acvr2ba (ENSCCRG00000045243)	ENSCCRG00000012515	ENSCCRG00000082527	ENSCCRG00000041296	ENSCCRG00000068837	xylb (ENSCCRG00000051954)	ENSCCRG00000051962	crygn2 (ENSCCRG00000053996)	ENSCCRG00000051964	PTPRM (ENSCCRG00000057990) #20	ENSCCRG00000079253	lama1 (ENSCCRG00000073645) #22	ARHGAP28 (ENSCCRG00000065819) #25	L3MBTL4 (ENSCCRG00000051360)	TMEM200C (ENSCCRG00000014081)	epb41l3a (ENSCCRG00000039229)	zbtb14 (ENSCCRG00000080819)	ENSCCRG00000052442	ENSCCRG00000074030 #7	PPP4R1 (ENSCCRG00000080430) #10	ENSCCRG00000006255 #13	ENSCCRG00000012904	ENSCCRG00000012899	ENSCCRG00000063548	ENSCCRG00000053838	ENSCCRG00000080895	ENSCCRG00000011354
Golden-line barbel	DUPLICATION
Golden-line barbel	DUPLICATION
Golden-line barbel	DUPLICATION
Golden-line barbel	MODERN SPECIES	681											ENSSGRG00000034963	srsf4 (ENSSGRG00000034962)	zfpm2b (ENSSGRG00000034960)	lrp12 (ENSSGRG00000034958)	ENSSGRG00000034140	lama1 (ENSSGRG00000034103) #22	ENSSGRG00000034099 #22	ARHGAP28 (ENSSGRG00000034097) #25	TMEM200C (ENSSGRG00000034094)	epb41l3a (ENSSGRG00000034067)	ENSSGRG00000034066
Golden-line barbel	MODERN SPECIES	681										ENSSGRG00000034963	srsf4 (ENSSGRG00000034962)	zfpm2b (ENSSGRG00000034960)	lrp12 (ENSSGRG00000034958)	ENSSGRG00000034140	lama1 (ENSSGRG00000034103) #22	ENSSGRG00000034099 #22	ARHGAP28 (ENSSGRG00000034097) #25	TMEM200C (ENSSGRG00000034094)	epb41l3a (ENSSGRG00000034067)	ENSSGRG00000034066
Golden-line barbel	MODERN SPECIES	1510																ENSSGRG00000019170 #22	ARHGAP28 (ENSSGRG00000019169) #25	L3MBTL4 (ENSSGRG00000019163)	TMEM200C (ENSSGRG00000019162)
Golden-line barbel	MODERN SPECIES	2594																ENSSGRG00000009409 #22
Zebrafish	MODERN SPECIES	16	ENSDARG00000103837	cebp1 (ENSDARG00000101096)	ENSDARG00000116146	gorasp1b (ENSDARG00000101928)	wdr48a (ENSDARG00000102734)	scn5lab (ENSDARG00000102312)	acvr2ba (ENSDARG00000044422)	xylb (ENSDARG00000043260)	ENSDARG00000061417	crygn2 (ENSDARG00000030411)	ENSDARG00000090213	ENSDARG00000114762 #20	ENSDARG00000100053 #20	ENSDARG00000098841	lrrc30a (ENSDARG00000029710) #21	lama1 (ENSDARG00000102277) #22	ENSDARG00000101350 #25	TMEM200C (ENSDARG00000101172)	epb41l3a (ENSDARG00000002255)	zbtb14 (ENSDARG00000098273)	top1mt (ENSDARG00000104809)	ppp4r1 (ENSDARG00000101316) #10	ENSDARG00000027824 #7	ssr1 (ENSDARG00000101627)	ahrra (ENSDARG00000099702)	pigm (ENSDARG00000024277)	snx16 (ENSDARG00000046072)	WWP1 (ENSDARG00000097537)	rmdn1 (ENSDARG00000074507)	serpinb1l3 (ENSDARG00000014556)
Euteleosteomorpha	ANCESTRAL SPECIES	46	ENSGT00940000155252.fb.b	ENSGT00940000153601.a.b.d	ENSGT00940000163532	ENSGT00940000163518	ENSGT00940000154802	ENSGT00940000154535.D.vb.b.b	ENSGT00940000156998.j.b	ENSGT00950000182886.a.a.a.d	ENSGT00940000155624.a.b	ENSGT00950000183110.b.b.k.b	ENSGT00940000156210.c	ENSGT00940000159301.c.b	ENSGT00940000165403.b.b	ENSGT00940000155020.u.a.b #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000164558.j.a	ENSGT00940000155020.u.b #20	ENSGT00530000063698.a.b.d.a	ENSGT00940000157047.m.a.b	ENSGT00940000158052.b	ENSGT00940000178275	ENSGT00640000091492.a.d	ENSGT00990000209385	ENSGT00530000063698.a.b.c	ENSGT00940000157047.m.b	ENSGT00940000158052.a.g	ENSGT00940000155006.f	ENSGT00640000091492.a.c	ENSGT00940000154799 #7	ENSGT00950000183066.a.b.a.a #10
Protacanthopterygii	ANCESTRAL SPECIES	80	ENSGT00940000159947	ENSGT00940000156304.d	ENSGT00940000156304.c.b	ENSGT00920000149157.d	ENSGT00940000154992.a.b	ENSGT01100000263681	ENSGT00940000160677	ENSGT00940000156210.d	ENSGT01000000214434.D	ENSGT00940000174963	ENSGT00390000010557	ENSGT00940000159301.c.a	ENSGT00940000165403.b.b	ENSGT00940000155020.u.a.b #20	ENSGT00940000161019 #21	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00940000158264.a	ENSGT00530000063698.a.b.c	ENSGT00940000157047.m.b	ENSGT00940000158052.a.g	ENSGT00940000155006.f	ENSGT00640000091492.a.c	ENSGT00990000209385	ENSGT00950000183066.a.b.a.a #10	ENSGT00940000155271.kb.a	ENSGT01050000244838.C.a	ENSGT00530000063859.a	ENSGT00390000006777.b	ENSGT00940000156581.h.a	ENSGT00940000154772.a.b.c
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	43	ENSGT00940000157008.h	ENSGT00940000159947.x	ENSGT00940000156304.d.f	ENSGT00920000149157.d.f	ENSGT00940000154992.a.b.a	ENSGT01100000263681	ENSGT00940000160677	ENSGT00940000156210.d.c	ENSGT01000000214434.D	ENSGT00940000174963.b	ENSGT00390000010557.r	ENSGT00940000159301.c.a.g	ENSGT00940000165403.b.b.a.a	ENSGT00940000155020.u.a.b.a.a #20	ENSGT00940000161019 #21	ENSGT00940000157124.e #22	ENSGT00940000158929.v.b #25	ENSGT00940000158264.a.c	ENSGT00530000063698.a.b.c.h	ENSGT00940000157047.m.b.c	ENSGT00940000158052.a.g.a	ENSGT00640000091492.a.c.d	ENSGT00940000154799.u.a.b #7	ENSGT00950000183066.a.b.a.a.g #10	ENSGT00390000007058.r.b #13	ENSGT00390000005826.b.e.a	ENSGT00940000154456.hb.b.s	ENSGT00940000160536.s.b	ENSGT00940000160536.s.a.a	ENSGT00390000013236.k.a	ENSGT00940000155271.kb.b
Salmoninae_a	ANCESTRAL SPECIES	35	ENSGT00940000159947.x	ENSGT00940000156304.d.f	ENSGT00940000156304.c.b	ENSGT00920000149157.d.f	ENSGT00940000154992.a.b.a	ENSGT01100000263681.e	ENSGT00940000160677	ENSGT00940000156210.d.c	ENSGT01000000214434.D	ENSGT00940000174963.b	ENSGT00390000010557.r	ENSGT00940000159301.c.a.g	ENSGT00940000165403.b.b.a.a	ENSGT00940000155020.u.a.b.a.a #20	ENSGT00940000161019.vb.a #21	ENSGT00940000157124.e #22	ENSGT00940000158929.v.b #25	ENSGT00940000158264.a.c	ENSGT00530000063698.a.b.c.h	ENSGT00940000157047.m.b.c	ENSGT00940000158052.a.g.a	ENSGT00640000091492.a.c.d	ENSGT00940000154799.u.a.b #7	ENSGT00950000183066.a.b.a.a.g #10	ENSGT00390000007058.r.b #13	ENSGT00390000005826.b.e.a	ENSGT00940000154456.hb.b.s	ENSGT00940000160536.s.a.a	ENSGT00390000013236.k.a	ENSGT00940000155271.kb.b	ENSGT01050000244838.C.a.d
Salmo	ANCESTRAL SPECIES	34	ENSGT00390000009127.h	ENSGT00940000157008.h	ENSGT00940000159947.x	ENSGT00940000156304.c.b	ENSGT00920000149157.d.f	ENSGT00940000154992.a.b.a	ENSGT00940000160677	ENSGT00940000156210.d.c	ENSGT01000000214434.D	ENSGT00940000174963.b	ENSGT00390000010557.r	ENSGT00940000159301.c.a.g	ENSGT00940000165403.b.b.a.a	ENSGT00940000155020.u.a.b.a.a #20	ENSGT00940000161019.vb.a #21	ENSGT00940000157124.e #22	ENSGT00940000158929.v.b #25	ENSGT00940000158264.a.c	ENSGT00530000063698.a.b.c.h	ENSGT00940000157047.m.b.c	ENSGT00940000158052.a.g.a	ENSGT00640000091492.a.c.d	ENSGT00940000154799.u.a.b #7	ENSGT00990000209385.c	ENSGT00950000183066.a.b.a.a.g #10	ENSGT00390000007058.r.b #13	ENSGT00390000005826.b.e.a	ENSGT00940000154456.hb.b.s	ENSGT00940000160536.s.a.a	ENSGT00390000013236.k.a	ENSGT00940000155271.kb.b
Atlantic salmon	MODERN SPECIES	21	ENSSSAG00000078732	ENSSSAG00000078635	ENSSSAG00000078631	ENSSSAG00000078545	WDR48 (ENSSSAG00000078227)	scn5lab (ENSSSAG00000075916)	EXOG (ENSSSAG00000104970)	acvr2ba (ENSSSAG00000074707)	xylb (ENSSSAG00000074638)	ENSSSAG00000085480	ENSSSAG00000074618	crygn2 (ENSSSAG00000074611)	ENSSSAG00000084013	PTPRM (ENSSSAG00000086566) #20	lrrc30a (ENSSSAG00000068889) #21	lama1 (ENSSSAG00000067113) #22	ARHGAP28 (ENSSSAG00000066995) #25	L3MBTL4 (ENSSSAG00000066988)	TMEM200C (ENSSSAG00000066985)	ENSSSAG00000101522	epb41l3a (ENSSSAG00000063278)	zbtb14 (ENSSSAG00000085644)	ENSSSAG00000063225	ENSSSAG00000063222	ENSSSAG00000063216 #7	PPP4R1 (ENSSSAG00000058855) #10	tws1a (ENSSSAG00000058724) #13	napga (ENSSSAG00000058415)	ENSSSAG00000056690	impa2 (ENSSSAG00000056621)	mppe1 (ENSSSAG00000056609)
River trout	MODERN SPECIES	36	riok3 (ENSSTUG00000023792)	CLVS1 (ENSSTUG00000024576)	ENSSTUG00000024619	WDR48 (ENSSTUG00000025337)	scn5lab (ENSSTUG00000025875)	ENSSTUG00000026118	ENSSTUG00000026144	EXOG (ENSSTUG00000026153)	acvr2ba (ENSSTUG00000026188)	xylb (ENSSTUG00000026669)	ENSSTUG00000026758	ENSSTUG00000026766	crygn2 (ENSSTUG00000026784)	PTPRM (ENSSTUG00000026907) #20	ENSSTUG00000035156	lama1 (ENSSTUG00000035205) #22	ARHGAP28 (ENSSTUG00000036603) #25	L3MBTL4 (ENSSTUG00000036673)	epb41l3a (ENSSTUG00000036735)	zbtb14 (ENSSTUG00000037385)	ENSSTUG00000037390	ENSSTUG00000037410 #7	ENSSTUG00000037431	ppp4r1 (ENSSTUG00000037508) #10	TWSG1 (ENSSTUG00000040032) #13	napga (ENSSTUG00000040052)	ENSSTUG00000040172	impa2 (ENSSTUG00000040416)	mppe1 (ENSSTUG00000040440)	gnal (ENSSTUG00000040469)	elovl2 (ENSSTUG00000041356)
Oncorhynchus	ANCESTRAL SPECIES	27	ENSGT00940000159947.x	ENSGT00940000156304.d.f	ENSGT00940000156304.c.b	ENSGT00920000149157.d.f	ENSGT00940000154992.a.b.a	ENSGT01100000263681.e	ENSGT00940000160677	ENSGT00940000156210.d.c	ENSGT01000000214434.D	ENSGT00940000174963.b	ENSGT00390000010557.r	ENSGT00940000159301.c.a.g	ENSGT00940000165403.b.b.a.a	ENSGT00940000155020.u.a.b.a.a #20	ENSGT00940000161019.vb.a #21	ENSGT00940000157124.e #22	ENSGT00940000158929.v.b #25	ENSGT00940000158264.a.c	ENSGT00530000063698.a.b.c.h	ENSGT00940000157047.m.b.c	ENSGT00940000158052.a.g.a	ENSGT00640000091492.a.c.d	ENSGT00940000154799.u.a.b #7	ENSGT00950000183066.a.b.a.a.g #10	ENSGT00390000007058.r.b #13	ENSGT00390000005826.b.e.a	ENSGT00940000154456.hb.b.s	ENSGT00940000160536.s.b	ENSGT00940000155271.kb.b	ENSGT01050000244838.C.a.d	ENSGT00530000063859.a
Oncorhynchus_a	ANCESTRAL SPECIES	27	ENSGT00940000157008.h	ENSGT00940000159947.x	ENSGT00940000156304.d.f	ENSGT00920000149157.d.f	ENSGT00940000154992.a.b.a	ENSGT01100000263681.e	ENSGT00940000160677	ENSGT00940000156210.d.c	ENSGT01000000214434.D	ENSGT00940000174963.b	ENSGT00390000010557.r	ENSGT00940000159301.c.a.g	ENSGT00940000165403.b.b.a.a	ENSGT00940000155020.u.a.b.a.a #20	ENSGT00940000161019.vb.a #21	ENSGT00940000157124.e #22	ENSGT00940000158929.v.b #25	ENSGT00940000158264.a.c	ENSGT00530000063698.a.b.c.h	ENSGT00940000157047.m.b.c	ENSGT00940000158052.a.g.a	ENSGT00640000091492.a.c.d	ENSGT00940000154799.u.a.b #7	ENSGT00950000183066.a.b.a.a.g #10	ENSGT00390000007058.r.b #13	ENSGT00390000005826.b.e.a	ENSGT00940000154456.hb.b.s	ENSGT00940000160536.s.b	ENSGT01000000220259	ENSGT00940000155271.kb.b	ENSGT01050000244838.C.a.d
Coho salmon	MODERN SPECIES	2	RIOK3 (ENSOKIG00005050270)	CLVS1 (ENSOKIG00005050266)	ENSOKIG00005050261	ASPH (ENSOKIG00005050253)	WDR48 (ENSOKIG00005050242)	scn5lab (ENSOKIG00005050235)	ENSOKIG00005050232	EXOG (ENSOKIG00005050231)	acvr2ba (ENSOKIG00005050094)	xylb (ENSOKIG00005049984)	ENSOKIG00005049942	ENSOKIG00005049939	crygn2 (ENSOKIG00005049932)	PTPRM (ENSOKIG00005048663) #20	lrrc30a (ENSOKIG00005048411) #21	lama1 (ENSOKIG00005047783) #22	ARHGAP28 (ENSOKIG00005047614) #25	L3MBTL4 (ENSOKIG00005047581)	TMEM200C (ENSOKIG00005047574)	epb41l3a (ENSOKIG00005047458)	zbtb14 (ENSOKIG00005047427)	ENSOKIG00005047416	VAPA (ENSOKIG00005047406) #7	PPP4R1 (ENSOKIG00005047187) #10	TWSG1 (ENSOKIG00005047162) #13	napga (ENSOKIG00005047141)	PIEZO2 (ENSOKIG00005046672)	impa2 (ENSOKIG00005046589)	ENSOKIG00005046575	gnal (ENSOKIG00005046513)	elovl2 (ENSOKIG00005046496)
Chinook salmon	MODERN SPECIES	21	ASPH (ENSOTSG00005028936)	WDR48 (ENSOTSG00005032900)	scn5lab (ENSOTSG00005032960)	ENSOTSG00005033041	ENSOTSG00005033042	EXOG (ENSOTSG00005033043)	acvr2ba (ENSOTSG00005033044)	xylb (ENSOTSG00005035352)	ENSOTSG00005035355	ENSOTSG00005035357	ENSOTSG00005035358	crygn2 (ENSOTSG00005035360)	ENSOTSG00005035361	PTPRM (ENSOTSG00005035458) #20	lrrc30a (ENSOTSG00005044535) #21	lama1 (ENSOTSG00005044566) #22	ARHGAP28 (ENSOTSG00005046574) #25	L3MBTL4 (ENSOTSG00005046575)	epb41l3a (ENSOTSG00005046588)	zbtb14 (ENSOTSG00005046947)	ENSOTSG00005046948	VAPA (ENSOTSG00005046949) #7	ppp4r1 (ENSOTSG00005046964) #10	TWSG1 (ENSOTSG00005047387) #13	napga (ENSOTSG00005047389)	PIEZO2 (ENSOTSG00005047397)	impa2 (ENSOTSG00005047398)	ENSOTSG00005047399	gnal (ENSOTSG00005047410)	elovl2 (ENSOTSG00005047490)	SYCP2L (ENSOTSG00005047491)
Rainbow trout	MODERN SPECIES	6	ENSOMYG00000027768	ENSOMYG00000029682	ENSOMYG00000031013	ENSOMYG00000031134	WDR48 (ENSOMYG00000031750)	scn5lab (ENSOMYG00000032231)	ENSOMYG00000032722	EXOG (ENSOMYG00000032729)	actriib (ENSOMYG00000032825)	xylb (ENSOMYG00000033223)	ENSOMYG00000034312	ENSOMYG00000034316	crygn2 (ENSOMYG00000034497)	PTPRM (ENSOMYG00000034829) #20	lrrc30a (ENSOMYG00000035667) #21	lama1 (ENSOMYG00000036140) #22	ARHGAP28 (ENSOMYG00000037402) #25	L3MBTL4 (ENSOMYG00000037489)	epb41l3a (ENSOMYG00000037689)	ENSOMYG00000066889	zbtb14 (ENSOMYG00000037884)	ENSOMYG00000037888	ENSOMYG00000037986 #7	PPP4R1 (ENSOMYG00000038673) #10	ENSOMYG00000042269 #13	ENSOMYG00000042286	ENSOMYG00000042412	gnal (ENSOMYG00000043508)	ENSOMYG00000043275	elovl2 (ENSOMYG00000044354)	gcm2 (ENSOMYG00000003636)
Huchen	MODERN SPECIES	65					scn5lab (ENSHHUG00000042958)	ENSHHUG00000042964	EXOG (ENSHHUG00000042965)	acvr2ba (ENSHHUG00000042966)	xylb (ENSHHUG00000043449)	ENSHHUG00000043467	ENSHHUG00000043475	crygn2 (ENSHHUG00000043512)	ENSHHUG00000043524	PTPRM (ENSHHUG00000043577) #20	ENSHHUG00000045091	lama1 (ENSHHUG00000045107) #22	ENSHHUG00000045727	ARHGAP28 (ENSHHUG00000045728) #25	L3MBTL4 (ENSHHUG00000045742)	TMEM200C (ENSHHUG00000045745)	epb41l3a (ENSHHUG00000045761)	zbtb14 (ENSHHUG00000045956)	ENSHHUG00000045960	ENSHHUG00000045977	ENSHHUG00000045991 #7	ppp4r1 (ENSHHUG00000046038) #10	TWSG1 (ENSHHUG00000046168) #13	napga (ENSHHUG00000046172)	ENSHHUG00000046189	impa2 (ENSHHUG00000046319)	gnal (ENSHHUG00000046327)
Salmoninae	ANCESTRAL SPECIES	1138															ENSGT00940000164558.j.b	ENSGT00940000157124.f #22	ENSGT00940000158929.v.a #25	ENSGT00940000158264.a.d
Huchen	MODERN SPECIES	1988														ENSHHUG00000010014	ENSHHUG00000010010	lama1 (ENSHHUG00000009581) #22	ENSHHUG00000009568 #25	ENSHHUG00000009560 #25
Salmoninae_a	ANCESTRAL SPECIES	32	ENSGT00400000022103.a.i	ENSGT00940000154775.c.b.k.b	ENSGT00940000161026.e	ENSGT00940000155633.D	ENSGT00530000063834.e.a.d	ENSGT00530000063843.b.e	ENSGT00940000153694.B.f	ENSGT00940000158957	ENSGT00940000156210.d.d	ENSGT00990000213957	ENSGT00940000174963.a	ENSGT00390000010557.q	ENSGT00940000159301.c.a.h	ENSGT00940000155020.u.a.b.a.b #20	ENSGT00940000161019.vb.b #21	ENSGT00940000157124.f #22	ENSGT00940000158929.v.a #25	ENSGT00940000158264.a.d	ENSGT00530000063698.a.b.c.g	ENSGT00940000157047.m.b.d	ENSGT00940000158052.a.g.b	ENSGT00940000155006.f	ENSGT00640000091492.a.c.c	ENSGT00990000209385	ENSGT00940000154799.u.a.a #7	ENSGT00950000183066.a.b.a.a.h #10	ENSGT00390000007058.r.a #13	ENSGT00390000005826.b.e.b	ENSGT00940000154456.hb.b.t	ENSGT00940000160536.t	ENSGT00390000013236.k.b
Salmo	ANCESTRAL SPECIES	3	ENSGT00390000009127.g	ENSGT00940000157008.g	ENSGT00950000182977.A.i.b.a.b.b.b.b.g	ENSGT00940000159947.w	ENSGT00940000156304.d.e	ENSGT00920000149157.d.e	ENSGT00940000154992.a.b.b	ENSGT01100000263681.f	ENSGT00940000156210.d.d	ENSGT00990000213957	ENSGT00940000174963.a	ENSGT00390000010557.q	ENSGT00940000159301.c.a.h	ENSGT00940000155020.u.a.b.a.b #20	ENSGT00940000161019.vb.b #21	ENSGT00940000157124.f #22	ENSGT00940000158929.v.a #25	ENSGT00940000158264.a.d	ENSGT00530000063698.a.b.c.g	ENSGT00940000157047.m.b.d	ENSGT00940000158052.a.g.b	ENSGT00940000155006.f	ENSGT00640000091492.a.c.c	ENSGT00990000209385.d	ENSGT00940000154799.u.a.a #7	ENSGT00950000183066.a.b.a.a.h #10	ENSGT00390000007058.r.a #13	ENSGT00390000005826.b.e.b	ENSGT00940000154456.hb.b.t	ENSGT00940000160536.t	ENSGT00940000160536.s.a.b
River trout	MODERN SPECIES	11	riok3 (ENSSTUG00000026586)	ENSSTUG00000026576	CLVS1 (ENSSTUG00000026563)	ASPH (ENSSTUG00000024035)	WDR48 (ENSSTUG00000023742)	ENSSTUG00000023719	scn5lab (ENSSTUG00000023534)	acvr2ba (ENSSTUG00000023035)	ENSSTUG00000023015	ENSSTUG00000023004	ENSSTUG00000022989	crygn2 (ENSSTUG00000022902)	ENSSTUG00000022892	PTPRM (ENSSTUG00000017692) #20	lrrc30a (ENSSTUG00000017562) #21	lama1 (ENSSTUG00000016493) #22	ARHGAP28 (ENSSTUG00000016251) #25	L3MBTL4 (ENSSTUG00000016213)	ENSSTUG00000016208	ENSSTUG00000016190	TMEM200C (ENSSTUG00000016175)	epb41l3a (ENSSTUG00000014270)	zbtb14 (ENSSTUG00000014222)	top1mt (ENSSTUG00000013231)	ENSSTUG00000013194	ENSSTUG00000013187	ENSSTUG00000013163 #7	ppp4r1 (ENSSTUG00000012329) #10	TWSG1 (ENSSTUG00000012283) #13	napga (ENSSTUG00000012214)	PIEZO2 (ENSSTUG00000011957)
Atlantic salmon	MODERN SPECIES	10	ENSSSAG00000018443	ENSSSAG00000018552	ENSSSAG00000019881	WDR48 (ENSSSAG00000039315)	SCN10A (ENSSSAG00000040203)	ENSSSAG00000049543	acvr2ba (ENSSSAG00000049721)	ENSSSAG00000111768	ENSSSAG00000055371	ENSSSAG00000055375	ENSSSAG00000105985	nub1 (ENSSSAG00000055379)	PTPRM (ENSSSAG00000091974) #20	ENSSSAG00000103970	ENSSSAG00000095497	lama1 (ENSSSAG00000073014) #22	ARHGAP28 (ENSSSAG00000075126) #25	L3MBTL4 (ENSSSAG00000075217)	TMEM200C (ENSSSAG00000075225)	ENSSSAG00000092693	epb41l3a (ENSSSAG00000075276)	zbtb14 (ENSSSAG00000076360)	top1mt (ENSSSAG00000076385)	ENSSSAG00000076686	VAPA (ENSSSAG00000076689) #7	PPP4R1 (ENSSSAG00000076754) #10	ENSSSAG00000078115 #13	ENSSSAG00000094276	ENSSSAG00000078125	ENSSSAG00000078178	ENSSSAG00000092044
Oncorhynchus	ANCESTRAL SPECIES	28	ENSGT00390000009127.g	ENSGT00940000157008.g	ENSGT01000000217476.a	ENSGT00940000159947.w	ENSGT00940000156304.d.e	ENSGT00920000149157.d.e	ENSGT01100000263681.f	ENSGT00940000154992.a.b.b	ENSGT00940000156210.d.d	ENSGT00990000213957	ENSGT00940000174963.a	ENSGT00390000010557.q	ENSGT00940000159301.c.a.h	ENSGT00940000155020.u.a.b.a.b #20	ENSGT00940000161019.vb.b #21	ENSGT00940000157124.f #22	ENSGT00940000158929.v.a #25	ENSGT00940000158264.a.d	ENSGT00530000063698.a.b.c.g	ENSGT00940000157047.m.b.d	ENSGT00940000158052.a.g.b	ENSGT00940000155006.f	ENSGT00640000091492.a.c.c	ENSGT00990000209385	ENSGT00940000154799.u.a.a #7	ENSGT00950000183066.a.b.a.a.h #10	ENSGT00390000007058.r.a #13	ENSGT00390000005826.b.e.b	ENSGT00940000154456.hb.b.t	ENSGT00940000160536.t	ENSGT00390000013236.k.b
Oncorhynchus_a	ANCESTRAL SPECIES	23	ENSGT00940000155450.d.a	ENSGT00390000009127.g	ENSGT00940000157008.g	ENSGT01000000217476.a	ENSGT00940000159947.w	ENSGT00940000156304.d.e	ENSGT00920000149157.d.e	ENSGT01100000263681.f	ENSGT00940000154992.a.b.b	ENSGT00940000156210.d.d	ENSGT00940000174963.a	ENSGT00390000010557.q	ENSGT00940000159301.c.a.h	ENSGT00940000155020.u.a.b.a.b #20	ENSGT00940000161019.vb.b #21	ENSGT00940000157124.f #22	ENSGT00940000158929.v.a #25	ENSGT00940000158264.a.d	ENSGT00530000063698.a.b.c.g	ENSGT00940000157047.m.b.d	ENSGT00940000158052.a.g.b	ENSGT00940000155006.f	ENSGT00640000091492.a.c.c	ENSGT00940000154799.u.a.a #7	ENSGT00990000209385	ENSGT00950000183066.a.b.a.a.h #10	ENSGT00390000007058.r.a #13	ENSGT00390000005826.b.e.b	ENSGT00940000154456.hb.b.t	ENSGT00940000160536.t	ENSGT00390000013236.k.b
Coho salmon	MODERN SPECIES	9	ENSOKIG00005009436	rmc1 (ENSOKIG00005009506)	riok3 (ENSOKIG00005010803)	ENSOKIG00005010996	CLVS1 (ENSOKIG00005011004)	ASPH (ENSOKIG00005011065)	WDR48 (ENSOKIG00005012361)	scn5lab (ENSOKIG00005013325)	ENSOKIG00005013578	acvr2ba (ENSOKIG00005013622)	ENSOKIG00005014392	ENSOKIG00005014408	crygn2 (ENSOKIG00005014423)	PTPRM (ENSOKIG00005014502) #20	lrrc30a (ENSOKIG00005014958) #21	lama1 (ENSOKIG00005015023) #22	ARHGAP28 (ENSOKIG00005015686) #25	L3MBTL4 (ENSOKIG00005015813)	TMEM200C (ENSOKIG00005015856)	epb41l3a (ENSOKIG00005015935)	zbtb14 (ENSOKIG00005018266)	top1mt (ENSOKIG00005018294)	ENSOKIG00005019031	ENSOKIG00005019055 #7	ENSOKIG00005019076	ppp4r1 (ENSOKIG00005019109) #10	TWSG1 (ENSOKIG00005019416) #13	napga (ENSOKIG00005019426)	PIEZO2 (ENSOKIG00005019541)	ENSOKIG00005021420	impa2 (ENSOKIG00005021426)
Chinook salmon	MODERN SPECIES	7	ENSOTSG00005036980	rmc1 (ENSOTSG00005036939)	riok3 (ENSOTSG00005036555)	ENSOTSG00005036551	CLVS1 (ENSOTSG00005036549)	ASPH (ENSOTSG00005034673)	WDR48 (ENSOTSG00005034602)	ENSOTSG00005034600	scn5lab (ENSOTSG00005034347)	acvr2ba (ENSOTSG00005032004)	ENSOTSG00005032002	ENSOTSG00005032001	crygn2 (ENSOTSG00005032000)	PTPRM (ENSOTSG00005029936) #20	ENSOTSG00005029931	lama1 (ENSOTSG00005029203) #22	ARHGAP28 (ENSOTSG00005029189) #25	L3MBTL4 (ENSOTSG00005029179)	TMEM200C (ENSOTSG00005029177)	epb41l3a (ENSOTSG00005029167)	zbtb14 (ENSOTSG00005029162)	ENSOTSG00005026813	ENSOTSG00005026802	ENSOTSG00005026799 #7	ppp4r1 (ENSOTSG00005006466) #10	ENSOTSG00005006442	TWSG1 (ENSOTSG00005006435) #13	napga (ENSOTSG00005006378)	PIEZO2 (ENSOTSG00005006368)	impa2 (ENSOTSG00005006365)	ENSOTSG00005006363
Rainbow trout	MODERN SPECIES	2	ENSOMYG00000058859	ENSOMYG00000014808	ENSOMYG00000014798	ENSOMYG00000014768	WDR48 (ENSOMYG00000014541)	scn5lab (ENSOMYG00000014354)	ENSOMYG00000051120	acvr2ba (ENSOMYG00000013080)	ENSOMYG00000071251	ENSOMYG00000012937	ENSOMYG00000073625	ENSOMYG00000012921	crygn2 (ENSOMYG00000012902)	PTPRM (ENSOMYG00000012874) #20	lrrc30a (ENSOMYG00000012832) #21	lama1 (ENSOMYG00000012170) #22	ARHGAP28 (ENSOMYG00000012019) #25	ENSOMYG00000048592	L3MBTL4 (ENSOMYG00000011964)	TMEM200C (ENSOMYG00000011950)	epb41l3a (ENSOMYG00000010200)	zbtb14 (ENSOMYG00000009482)	top1mt (ENSOMYG00000008985)	ENSOMYG00000008740	ENSOMYG00000008675	vapa (ENSOMYG00000008655) #7	PPP4R1 (ENSOMYG00000008288) #10	ENSOMYG00000007804 #13	napga (ENSOMYG00000007732)	ENSOMYG00000053414	ENSOMYG00000007247
Northern pike	MODERN SPECIES	20	ENSELUG00000031347	CLVS1 (ENSELUG00000017699)	ENSELUG00000017985	wdr48a (ENSELUG00000018099)	scn5lab (ENSELUG00000018230)	ENSELUG00000018115	EXOG (ENSELUG00000032084)	acvr2ba (ENSELUG00000018293)	xylb (ENSELUG00000018308)	ENSELUG00000018316	ENSELUG00000018335	crygn2 (ENSELUG00000018367)	PTPRM (ENSELUG00000018485) #20	ENSELUG00000026483	lrrc30a (ENSELUG00000018510) #21	lama1 (ENSELUG00000019009) #22	ARHGAP28 (ENSELUG00000019101) #25	L3MBTL4 (ENSELUG00000019164)	TMEM200C (ENSELUG00000019176)	epb41l3a (ENSELUG00000019244)	zbtb14 (ENSELUG00000019277)	top1mt (ENSELUG00000019336)	ENSELUG00000019372	vapa (ENSELUG00000019481) #7	ENSELUG00000019386	ppp4r1 (ENSELUG00000019558) #10	TWSG1 (ENSELUG00000019599) #13	napga (ENSELUG00000019664)	PIEZO2 (ENSELUG00000019832)	impa2 (ENSELUG00000019876)	mppe1 (ENSELUG00000019887)
Acanthomorphata	ANCESTRAL SPECIES	211					ENSGT00940000160677	ENSGT00940000156210.d	ENSGT01000000214434.D	ENSGT00940000179410	ENSGT00390000010557	ENSGT00940000155281.bb.b	ENSGT00390000020445	ENSGT00940000158304	ENSGT00390000001844.a.a	ENSGT00940000155020.u.a.b #20	ENSGT00940000164558.j.b	ENSGT00940000157124 #22	ENSGT00940000158929 #25	ENSGT00940000158264.a	ENSGT00530000063698.a.b.d.b	ENSGT00940000157047.m.a.a	ENSGT00940000158052.a.g	ENSGT00530000063859.a	ENSGT00390000006777.b
Cod	MODERN SPECIES	15	ENSGMOG00000027734	plxdc2b (ENSGMOG00000004882)	ENSGMOG00000006751	arl8 (ENSGMOG00000033264)	NPHP3 (ENSGMOG00000010120)	UBA5 (ENSGMOG00000010107)	ACAD11 (ENSGMOG00000010092)	ACKR4 (ENSGMOG00000026042)	U2SURP (ENSGMOG00000002641)	pcolce2b (ENSGMOG00000002613)	trpc1 (ENSGMOG00000002586)	CHST2 (ENSGMOG00000026024)	dipk2ab (ENSGMOG00000014692)	plod2 (ENSGMOG00000017076)	ENSGMOG00000036880 #20	LAMA1 (ENSGMOG00000031073) #22	ARHGAP28 (ENSGMOG00000022688) #25	L3MBTL4 (ENSGMOG00000012699)	ENSGMOG00000002334	ENSGMOG00000030613	ENSGMOG00000023929	ENSGMOG00000036160	ENSGMOG00000006315	ENSGMOG00000023226	ENSGMOG00000031124	ENSGMOG00000026732	ENSGMOG00000023731	ENSGMOG00000027257	ENSGMOG00000013724	ENSGMOG00000022989	ENSGMOG00000027475
Euacanthomorphacea	ANCESTRAL SPECIES	106														ENSGT00940000155020.u.a.b #20	ENSGT00940000164558.j.b	ENSGT00940000157124 #22	ENSGT00390000006777.b	ENSGT00530000063859.a	ENSGT00940000158052.a.g	ENSGT00940000158929 #25	ENSGT00940000158264.a	ENSGT00530000063698.a.b.d.b	ENSGT00940000157047.m.a.a	ENSGT00950000182774.b.a.b.a.b.a.a.a.b.b.c.b	ENSGT00940000162287.A.i.b	ENSGT00940000161979.B.o.cb	ENSGT00390000001844.a.a	ENSGT00390000020445	ENSGT00940000155281.bb.b	ENSGT00390000010557	ENSGT00940000179410
Pinecone sodierfish	MODERN SPECIES	12	ENSMMDG00005003730	ENSMMDG00005003741	ENSMMDG00005003768	ENSMMDG00005003772	ENSMMDG00005003786 #25	zbtb14 (ENSMMDG00005003800)	ENSMMDG00005003916	ENSMMDG00005003922	napga (ENSMMDG00005003926)	ENSMMDG00005003935	gcm2 (ENSMMDG00005003947)	ENSMMDG00005004140	ENSMMDG00005004151 #20	ENSMMDG00005004168	ENSMMDG00005004175	lama1 (ENSMMDG00005004354) #22	actr3b (ENSMMDG00005005668)	ENSMMDG00005005930	ENSMMDG00005005933	ENSMMDG00005005943	ENSMMDG00005005968	ENSMMDG00005005971	ENSMMDG00005005972	ENSMMDG00005005975	galnt11 (ENSMMDG00005005986)	ENSMMDG00005006159	ENSMMDG00005006162	ENSMMDG00005006168	PRKAG2 (ENSMMDG00005006170)	ENSMMDG00005006309	ENSMMDG00005014218
Percomorphaceae	ANCESTRAL SPECIES	155														ENSGT00940000155020.u.a.b #20	ENSGT00940000164558.j.b	ENSGT00940000157124 #22	ENSGT00940000157047.m.a.a	ENSGT00530000063698.a.b.d.b
Tiger tail seahorse	DUPLICATION
Tiger tail seahorse	MODERN SPECIES	355															ENSHCOG00000008039 #22	ENSHCOG00000008063 #22	ENSHCOG00000008095	zbtb14 (ENSHCOG00000008115)	ENSHCOG00000008124 #25	ENSHCOG00000008141	ENSHCOG00000008173	ENSHCOG00000008260	gnal (ENSHCOG00000008286)	ENSHCOG00000008295	ENSHCOG00000008570 #20	ENSHCOG00000008604	ENSHCOG00000008619	ENSHCOG00000008629	ENSHCOG00000008644	galnt11 (ENSHCOG00000008667)	ENSHCOG00000008678
Tiger tail seahorse	MODERN SPECIES	355																ENSHCOG00000008039 #22	ENSHCOG00000008063 #22	ENSHCOG00000008095	zbtb14 (ENSHCOG00000008115)	ENSHCOG00000008124 #25	ENSHCOG00000008141	ENSHCOG00000008173	ENSHCOG00000008260	gnal (ENSHCOG00000008286)	ENSHCOG00000008295	ENSHCOG00000008570 #20	ENSHCOG00000008604	ENSHCOG00000008619	ENSHCOG00000008629	ENSHCOG00000008644	galnt11 (ENSHCOG00000008667)
Percomorphaceae_B	ANCESTRAL SPECIES	20																ENSGT00940000157124 #22	ENSGT00940000157047.m.a.a	ENSGT00530000063698.a.b.d.b	ENSGT00940000158264.a	ENSGT00940000158929 #25	ENSGT00940000158052.a.g	ENSGT00940000177091	ENSGT00530000063859.a	ENSGT00390000006777.b	ENSGT00940000164558.j.b	ENSGT00940000155020.u.a.b #20	ENSGT00940000155274	ENSGT00390000001844.a.a	ENSGT00940000158227	ENSGT00940000177274	ENSGT00970000193497
Percomorphaceae_C	ANCESTRAL SPECIES	21																ENSGT00940000157124 #22	ENSGT00940000157047.m.a.a	ENSGT00940000154456.hb.b	ENSGT00530000063698.a.b.d.b	ENSGT00940000158264.a	ENSGT00940000158929 #25	ENSGT00940000158052.a.g	ENSGT00940000177091	ENSGT00530000063859.a	ENSGT00390000006777.b	ENSGT00940000164558.j.b	ENSGT00940000155020.u.a.b #20	ENSGT00940000155274	ENSGT00390000001844.a.a	ENSGT00940000158227	ENSGT00940000177274
Percomorphaceae_D	ANCESTRAL SPECIES	33																ENSGT00940000157124 #22	ENSGT00940000157047.m.a.a	ENSGT00940000154456.hb.b	ENSGT00530000063698.a.b.d.b	ENSGT00940000158264.a	ENSGT00940000158929 #25	ENSGT00940000158052.a.g	ENSGT00940000177091	ENSGT00530000063859.a	ENSGT00390000006777.b	ENSGT00940000164558.j.b	ENSGT00940000155020.u.a.b #20	ENSGT00940000155274	ENSGT00390000001844.a.a	ENSGT00940000158227	ENSGT00970000193497
Carangaria	ANCESTRAL SPECIES	39																ENSGT00940000157124 #22	ENSGT00940000157047.m.a.a	ENSGT00940000154456.hb.b	ENSGT00530000063698.a.b.d.b	ENSGT00940000158264.a	ENSGT00940000158929 #25	ENSGT00940000158052.a.g	ENSGT00940000177091	ENSGT00530000063859.a	ENSGT00390000006777.b	ENSGT00940000164558.j.b	ENSGT00940000155020.u.a.b #20	ENSGT00940000155274	ENSGT00390000001844.a.a	ENSGT00940000158227	ENSGT01090000260003.a.b.b.a.a.b.a.b.a
Pleuronectoidei	ANCESTRAL SPECIES	81																ENSGT00940000157124 #22	ENSGT00940000157047.m.a.a	ENSGT00940000154456.hb.b	ENSGT00940000158264.a	ENSGT00940000158929 #25	ENSGT00940000158052.a.g	ENSGT00940000177091	ENSGT00940000155271.lb	ENSGT00530000063859.a	ENSGT00390000006777.b	ENSGT00940000164558.j.b	ENSGT00940000155020.u.a.b #20	ENSGT00940000161979.B.o.cb	ENSGT00390000001844.a.a	ENSGT00940000158227	ENSGT00390000020445
Turbot	MODERN SPECIES	13																ENSSMAG00000037051 #22	ENSSMAG00000023006	ENSSMAG00000030479	L3MBTL4 (ENSSMAG00000023160)	ENSSMAG00000011359 #25	ENSSMAG00000011335	ENSSMAG00000011294	ENSSMAG00000011266	ENSSMAG00000024680	ENSSMAG00000011194 #20	ENSSMAG00000032990	ENSSMAG00000011158	ENSSMAG00000011135	ENSSMAG00000030847	ENSSMAG00000011102	ENSSMAG00000034151
Tongue sole	MODERN SPECIES		ENSCSEG00000014702	ENSCSEG00000014714	ENSCSEG00000014719	cd248a (ENSCSEG00000014734)	ENSCSEG00000014741	ENSCSEG00000014756	MBLAC1 (ENSCSEG00000014784)	mpdu1b (ENSCSEG00000014788)	sox19b (ENSCSEG00000014795)	eif4a1a (ENSCSEG00000014807)	senp3b (ENSCSEG00000014837)	acox3 (ENSCSEG00000014849)	ENSCSEG00000014882	ache (ENSCSEG00000014888)	rgn (ENSCSEG00000014899)	lama1 (ENSCSEG00000014941) #22	ENSCSEG00000015125	ENSCSEG00000015134	ENSCSEG00000015144	ENSCSEG00000015174	ENSCSEG00000015187	ENSCSEG00000015203 #25	ttc1 (ENSCSEG00000015243)	pfdn1 (ENSCSEG00000006737)	mat2b (ENSCSEG00000006745)	MOGAT1 (ENSCSEG00000006754)	ENSCSEG00000006771	ENSCSEG00000006787	ENSCSEG00000006799	ENSCSEG00000006811	NAT16 (ENSCSEG00000006819)
Carangaria_A	ANCESTRAL SPECIES	94						ENSGT01060000249006	ENSGT00390000020445	ENSGT00940000158304	ENSGT01090000260003.a.b.b.a.a.b.a.b.a	ENSGT01000000214731	ENSGT00940000165841	ENSGT00390000001844.a.a	ENSGT00940000155274	ENSGT00940000155020.u.a.b #20	ENSGT00940000164558.j.b	ENSGT00940000157124 #22	ENSGT01090000260059.a.b.b.a.a.a.a.b.b.a.a	ENSGT00390000006777.b	ENSGT00530000063859.a	ENSGT00940000177091	ENSGT00940000158052.a.g	ENSGT00940000158929 #25	ENSGT00940000158264.a	ENSGT00530000063698.a.b.d.b	ENSGT00940000154456.hb.b	ENSGT00940000157047.m.a.a
Seriola	ANCESTRAL SPECIES	138																ENSGT00940000157124 #22	ENSGT00940000157047.m.a.a	ENSGT00940000154456.hb.b	ENSGT00530000063698.a.b.d.b	ENSGT00940000158264.a	ENSGT00940000158929 #25	ENSGT00940000158052.a.g	ENSGT00940000177091	ENSGT00390000006777.b	ENSGT00530000063859.a	ENSGT00940000155020.u.a.b #20	ENSGT00940000155274	ENSGT00390000001844.a.a	ENSGT00940000165841	ENSGT01000000214731.d	ENSGT01090000260003.a.b.b.a.a.b.a.b.a
Greater amberjack	DUPLICATION
Greater amberjack	DUPLICATION
Greater amberjack	MODERN SPECIES	185																ENSSDUG00000009547 #22	ENSSDUG00000009582 #22	ENSSDUG00000009636 #22	ENSSDUG00000009727	ENSSDUG00000009766	ENSSDUG00000009795	L3MBTL4 (ENSSDUG00000009827)	ENSSDUG00000009869 #25	zbtb14 (ENSSDUG00000009948)	ENSSDUG00000009985	ENSSDUG00000010019	gcm2 (ENSSDUG00000010050)	ENSSDUG00000010083	lrrc30a (ENSSDUG00000010156) #21	PTPRM (ENSSDUG00000010187) #20	ENSSDUG00000010305
Greater amberjack	MODERN SPECIES	185														ENSSDUG00000009547 #22	ENSSDUG00000009582 #22	ENSSDUG00000009636 #22	ENSSDUG00000009727	ENSSDUG00000009766	ENSSDUG00000009795	L3MBTL4 (ENSSDUG00000009827)	ENSSDUG00000009869 #25	zbtb14 (ENSSDUG00000009948)	ENSSDUG00000009985	ENSSDUG00000010019	gcm2 (ENSSDUG00000010050)	ENSSDUG00000010083	lrrc30a (ENSSDUG00000010156) #21	PTPRM (ENSSDUG00000010187) #20	ENSSDUG00000010305	chodl (ENSSDUG00000010315)	galnt11 (ENSSDUG00000010344)
Greater amberjack	MODERN SPECIES	185															ENSSDUG00000009547 #22	ENSSDUG00000009582 #22	ENSSDUG00000009636 #22	ENSSDUG00000009727	ENSSDUG00000009766	ENSSDUG00000009795	L3MBTL4 (ENSSDUG00000009827)	ENSSDUG00000009869 #25	zbtb14 (ENSSDUG00000009948)	ENSSDUG00000009985	ENSSDUG00000010019	gcm2 (ENSSDUG00000010050)	ENSSDUG00000010083	lrrc30a (ENSSDUG00000010156) #21	PTPRM (ENSSDUG00000010187) #20	ENSSDUG00000010305	chodl (ENSSDUG00000010315)
Yellowtail amberjack	MODERN SPECIES	3232																lama1 (ENSSLDG00000007241) #22	ENSSLDG00000007526	ENSSLDG00000007571	ENSSLDG00000007615	ENSSLDG00000007667	ENSSLDG00000007699	ENSSLDG00000007727	ARHGAP28 (ENSSLDG00000007779) #25	zbtb14 (ENSSLDG00000007826)	ENSSLDG00000007866	ENSSLDG00000007894	gcm2 (ENSSLDG00000007921)	ENSSLDG00000007971	lrrc30a (ENSSLDG00000007986) #21	PTPRM (ENSSLDG00000008021) #20	ENSSLDG00000008094
Barramundi perch	MODERN SPECIES	424														PTPRM (ENSLCAG00010016863) #20	ENSLCAG00010016522	lama1 (ENSLCAG00010016435) #22	ENSLCAG00010016397	ENSLCAG00010016256	ENSLCAG00010016242 #25	zbtb14 (ENSLCAG00010016230)	ENSLCAG00010016227	ENSLCAG00010016219	ENSLCAG00010016214	gcm2 (ENSLCAG00010016210)	ENSLCAG00010016209	ENSLCAG00010016208	chodl (ENSLCAG00010016204)	galnt11 (ENSLCAG00010016198)	ENSLCAG00010016193	ENSLCAG00010016188	ENSLCAG00010016187
Anabantaria	ANCESTRAL SPECIES	98																ENSGT00940000157124 #22	ENSGT00940000157047.m.a.a
Anabantoidei	ANCESTRAL SPECIES	88																ENSGT00940000157124 #22	ENSGT00940000157047.m.a.a
Climbing perch	MODERN SPECIES	11	pudp (ENSATEG00000012775)	nlgn4xa (ENSATEG00000012873)	ENSATEG00000012902	PRKX (ENSATEG00000025575)	MXRA5 (ENSATEG00000028724)	gyg2 (ENSATEG00000013132)	cd99 (ENSATEG00000013440)	dhrsx (ENSATEG00000013588)	ENSATEG00000013636	cep70 (ENSATEG00000025864)	adarb1a (ENSATEG00000013653)	slx9 (ENSATEG00000026147)	ENSATEG00000013684	cnot9 (ENSATEG00000013696)	ENSATEG00000013711	ENSATEG00000013779 #22	ENSATEG00000014107	ENSATEG00000026007	ENSATEG00000026583	ENSATEG00000014144	ENSATEG00000014176	ENSATEG00000014215 #25	ENSATEG00000014252	ENSATEG00000014346	ENSATEG00000028647	ENSATEG00000014379	ENSATEG00000014414	ENSATEG00000014434	ENSATEG00000014439	ENSATEG00000014446	ENSATEG00000014503 #20
Siamese fighting fish	MODERN SPECIES	15	gamt (ENSBSLG00000010571)	dazap1 (ENSBSLG00000010541)	dpp9 (ENSBSLG00000009815)	ANGPTL4 (ENSBSLG00000009723)	kank3 (ENSBSLG00000009686)	MAST3 (ENSBSLG00000009091)	ndufa7 (ENSBSLG00000009047)	ENSBSLG00000009013	ENSBSLG00000008989	B3GNT3 (ENSBSLG00000008981)	B3GNT3 (ENSBSLG00000008968)	B3GNT3 (ENSBSLG00000008950)	ENSBSLG00000008930	ENSBSLG00000008901	B3GNT3 (ENSBSLG00000008786)	lama1 (ENSBSLG00000007979) #22	ENSBSLG00000007865	ENSBSLG00000007823	ENSBSLG00000007804	ENSBSLG00000007789	ENSBSLG00000013928	ENSBSLG00000013895	actr3b (ENSBSLG00000013597)	ENSBSLG00000013547	GALNT11 (ENSBSLG00000013425)	chodl (ENSBSLG00000013393)	PTPRM (ENSBSLG00000012738) #20	ENSBSLG00000012716	TMEM200C (ENSBSLG00000012646)	ENSBSLG00000012617	ARHGAP28 (ENSBSLG00000012597) #25
Zig-zag eel	MODERN SPECIES	12	ENSMAMG00000018385	ENSMAMG00000018427	ENSMAMG00000018495	ENSMAMG00000018513	ENSMAMG00000018536	ENSMAMG00000018543	ENSMAMG00000018591	ENSMAMG00000018607	ENSMAMG00000018617	ENSMAMG00000018656	ENSMAMG00000018677 #25	L3MBTL4 (ENSMAMG00000018706)	ENSMAMG00000018727	ENSMAMG00000018749 #20	ENSMAMG00000018910	ENSMAMG00000019000 #22	ENSMAMG00000025061
Eupercaria	ANCESTRAL SPECIES	34																ENSGT00940000157124 #22	ENSGT00940000157047.m.a.a	ENSGT00940000154456.hb.b	ENSGT00530000063698.a.b.d.b	ENSGT00940000158264.a	ENSGT00940000158929 #25	ENSGT00940000158052.a.g	ENSGT00940000177091	ENSGT00530000063859.a	ENSGT00390000006777.b	ENSGT00940000164558.j.b	ENSGT00940000155020.u.a.b #20	ENSGT00940000155274	ENSGT00390000001844.a.a	ENSGT01090000260003.a.b.b.a.a.b.a.b.a	ENSGT00940000158304
Tetraodontidae	ANCESTRAL SPECIES	298																ENSGT00940000157124 #22	ENSGT00940000157047.m.a.a	ENSGT00940000154456.hb.b
Tetraodon	MODERN SPECIES	19	ENSTNIG00000001702	sbno1 (ENSTNIG00000013506)	kmt5aa (ENSTNIG00000013507)	RILPL1 (ENSTNIG00000013508)	HIP1R (ENSTNIG00000013509)	denr (ENSTNIG00000013510)	ENSTNIG00000013511	ENSTNIG00000013512	bcl7a (ENSTNIG00000013513)	eif2b1 (ENSTNIG00000013514)	ddx55 (ENSTNIG00000013515)	dipk1c (ENSTNIG00000005803)	tubb6 (ENSTNIG00000013517)	zgc:162895 (ENSTNIG00000013518)	tmed2 (ENSTNIG00000013520)	lama1 (ENSTNIG00000013519) #22	ENSTNIG00000013521	ENSTNIG00000011225	ENSTNIG00000013522	ENSTNIG00000013523	pitpnb (ENSTNIG00000013524)	NAA25 (ENSTNIG00000013525)	brap (ENSTNIG00000013526)	tor4aa (ENSTNIG00000013527)	zgc:56235 (ENSTNIG00000013528)	cluap1 (ENSTNIG00000013529)	SLC25A1 (ENSTNIG00000013530)	pi4kaa (ENSTNIG00000013531)	MARVELD2 (ENSTNIG00000013532)	oclna (ENSTNIG00000013533)	ENSTNIG00000013534
Eupecaria_A	ANCESTRAL SPECIES	19																ENSGT00940000157124 #22	ENSGT00940000157047.m.a.a	ENSGT00940000154456.hb.b	ENSGT00530000063698.a.b.d.b	ENSGT00940000158264.a	ENSGT00940000158929 #25	ENSGT00940000158052.a.g	ENSGT00940000177091	ENSGT00530000063859.a	ENSGT00390000006777.b	ENSGT00940000164558.j.b	ENSGT00940000155020.u.a.b #20	ENSGT00940000155274	ENSGT00390000001844.a.a	ENSGT01090000260003.a.b.b.a.a.b.a.b.a	ENSGT00940000158304
Ballan wrasse	MODERN SPECIES	1379																lama1 (ENSLBEG00000002309) #22
Eupecaria_B	ANCESTRAL SPECIES	37																ENSGT00940000157124 #22	ENSGT00940000157047.m.a.a	ENSGT00940000154456.hb.b	ENSGT00530000063698.a.b.d.b	ENSGT00940000158264.a	ENSGT00940000158929 #25	ENSGT00940000158052.a.g	ENSGT00940000177091	ENSGT00530000063859.a	ENSGT00390000006777.b	ENSGT00940000164558.j.b	ENSGT00940000155020.u.a.b #20	ENSGT00940000155274	ENSGT00390000001844.a.a	ENSGT00940000165841	ENSGT00940000155281.cb
Eupecaria_C	ANCESTRAL SPECIES	62																ENSGT00940000157124 #22	ENSGT00940000157047.m.a.a	ENSGT00940000154456.hb.b	ENSGT00530000063698.a.b.d.b	ENSGT00940000158264.a	ENSGT00940000158929 #25	ENSGT00940000158052.a.g	ENSGT00390000006777.b	ENSGT00940000155020.u.a.b #20	ENSGT00940000155274	ENSGT00940000161979.B.o.cb	ENSGT00390000001844.a.a	ENSGT00940000165841
Gilthead seabream	MODERN SPECIES	10	dtnbp1a (ENSSAUG00010024339)	ENSSAUG00010024340	ENSSAUG00010024342	ENSSAUG00010024344	ENSSAUG00010024346	ENSSAUG00010024347	ENSSAUG00010024349	ENSSAUG00010024350	ENSSAUG00010024351	chodl (ENSSAUG00010024353)	ENSSAUG00010024354	zbtb14 (ENSSAUG00010024358)	ARHGAP28 (ENSSAUG00010024361) #25	ENSSAUG00010024363	TMEM200C (ENSSAUG00010024365)	lama1 (ENSSAUG00010002704) #22	ENSSAUG00010003330	ENSSAUG00010003383	ENSSAUG00010007159	ENSSAUG00010007167	ENOX1 (ENSSAUG00010007330)	ENSSAUG00010007332
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	80																ENSGT00940000157124 #22	ENSGT00940000157047.m.a.a	ENSGT00940000154456.hb.b	ENSGT00530000063698.a.b.d.b	ENSGT00940000158264.a	ENSGT00940000158929 #25	ENSGT00940000158052.a.g	ENSGT00390000006777.b	ENSGT00940000155020.u.a.b #20	ENSGT00940000155274	ENSGT00940000161979.B.o.cb	ENSGT00390000001844.a.a	ENSGT00940000165841	ENSGT00390000020445	ENSGT00940000158304.h	ENSGT01090000260003.a.b.b.a.a.b.a.b.a
European seabass	MODERN SPECIES	20	ENSDLAG00005015336	ENSDLAG00005034477	ENSDLAG00005029700	ENSDLAG00005014294	ENSDLAG00005033976	ENSDLAG00005014185	ENSDLAG00005032350	ENSDLAG00005004109	ENSDLAG00005015376	ENSDLAG00005017294	ENSDLAG00005015314	ENSDLAG00005030661	ENSDLAG00005017373	ENSDLAG00005011162	ENSDLAG00005033947	ENSDLAG00005031544 #22	EPB41L3 (ENSDLAG00005034082)	ENSDLAG00005031450	TMEM200C (ENSDLAG00005002720)	L3MBTL4 (ENSDLAG00005002333)	ENSDLAG00005005807	ARHGAP28 (ENSDLAG00005027073) #25	ENSDLAG00005014685	ENSDLAG00005029451	ENSDLAG00005033428	ENSDLAG00005028169	ENSDLAG00005029535	ENSDLAG00005028407	ENSDLAG00005016042	ENSDLAG00005029358 #20	ENSDLAG00005016728
Large yellow croaker	MODERN SPECIES	480	ENSLCRG00005004651	xpo7 (ENSLCRG00005003644)	pbdc1 (ENSLCRG00005003631)	dmtn (ENSLCRG00005003630)	ppp3ccb (ENSLCRG00005003155)	MYL5 (ENSLCRG00005003106)	hpse (ENSLCRG00005003105)	ENSLCRG00005003103	ENSLCRG00005003070	ENSLCRG00005003055	galnt11 (ENSLCRG00005003033)	gcm2 (ENSLCRG00005003026)	ENSLCRG00005003020	ENSLCRG00005002240	zbtb14 (ENSLCRG00005002230)	lama1 (ENSLCRG00005001291) #22	ENSLCRG00005001261	ENSLCRG00005001188	ENSLCRG00005001069	ENSLCRG00005001028	ENSLCRG00005001019	ENSLCRG00005001015	PTPRM (ENSLCRG00005000531) #20	ENSLCRG00005000520	TMEM200C (ENSLCRG00005000519)	ENSLCRG00005000435	ARHGAP28 (ENSLCRG00005000424) #25	PCDH20 (ENSLCRG00005000421)	tdrd3 (ENSLCRG00005000399)	diaph3 (ENSLCRG00005000351)	pcdh17 (ENSLCRG00005000307)
Perciformes	ANCESTRAL SPECIES	55	ENSGT00940000165841	ENSGT00940000155281.cb	ENSGT00390000020445	ENSGT00940000158304.h	ENSGT01090000260003.a.b.b.a.a.b.a.b.a	ENSGT00390000001844.a.a	ENSGT00940000155274	ENSGT00940000155020.u.a.b #20	ENSGT00940000164558.j.b	ENSGT00390000006777.b	ENSGT00940000177091	ENSGT00940000158052.a.g	ENSGT00940000158929 #25	ENSGT00940000158264.a	ENSGT00530000063698.a.b.d.b	ENSGT00940000157124 #22	ENSGT00940000157047.m.a.a	ENSGT00940000154456.hb.b
Cottioidei	ANCESTRAL SPECIES																	ENSGT00940000157124 #22
Lumpfish	DUPLICATION
Lumpfish	DUPLICATION
Lumpfish	MODERN SPECIES	12	cyb5a (ENSCLMG00005009847)	ENSCLMG00005009845	dipk1c (ENSCLMG00005009842)	ENSCLMG00005008079	ENSCLMG00005008044	cavin4b (ENSCLMG00005008041)	ENSCLMG00005008039	eci2 (ENSCLMG00005008037)	inhbaa (ENSCLMG00005007978)	sugct (ENSCLMG00005007895)	crygn2 (ENSCLMG00005007891)	ENSCLMG00005007889	xylb (ENSCLMG00005007882)	acvr2ba (ENSCLMG00005007207)	ENSCLMG00005007195 #22	ENSCLMG00005007193 #22	ENSCLMG00005007192 #22	ENSCLMG00005007190	ENSCLMG00005007186	ENSCLMG00005006993	ENSCLMG00005006986 #25	zbtb14 (ENSCLMG00005006983)	ENSCLMG00005006980	ENSCLMG00005006977	ENSCLMG00005006622	gcm2 (ENSCLMG00005006618)	LRRC30 (ENSCLMG00005006615) #21	ENSCLMG00005006614	PTPRM (ENSCLMG00005005671) #20	ENSCLMG00005005618	ENSCLMG00005005617
Lumpfish	MODERN SPECIES	12	ENSCLMG00005009845	dipk1c (ENSCLMG00005009842)	ENSCLMG00005008079	ENSCLMG00005008044	cavin4b (ENSCLMG00005008041)	ENSCLMG00005008039	eci2 (ENSCLMG00005008037)	inhbaa (ENSCLMG00005007978)	sugct (ENSCLMG00005007895)	crygn2 (ENSCLMG00005007891)	ENSCLMG00005007889	xylb (ENSCLMG00005007882)	acvr2ba (ENSCLMG00005007207)	ENSCLMG00005007195 #22	ENSCLMG00005007193 #22	ENSCLMG00005007192 #22	ENSCLMG00005007190	ENSCLMG00005007186	ENSCLMG00005006993	ENSCLMG00005006986 #25	zbtb14 (ENSCLMG00005006983)	ENSCLMG00005006980	ENSCLMG00005006977	ENSCLMG00005006622	gcm2 (ENSCLMG00005006618)	LRRC30 (ENSCLMG00005006615) #21	ENSCLMG00005006614	PTPRM (ENSCLMG00005005671) #20	ENSCLMG00005005618	ENSCLMG00005005617	ENSCLMG00005005616
Lumpfish	MODERN SPECIES	12	ENSCLMG00005009848	cyb5a (ENSCLMG00005009847)	ENSCLMG00005009845	dipk1c (ENSCLMG00005009842)	ENSCLMG00005008079	ENSCLMG00005008044	cavin4b (ENSCLMG00005008041)	ENSCLMG00005008039	eci2 (ENSCLMG00005008037)	inhbaa (ENSCLMG00005007978)	sugct (ENSCLMG00005007895)	crygn2 (ENSCLMG00005007891)	ENSCLMG00005007889	xylb (ENSCLMG00005007882)	acvr2ba (ENSCLMG00005007207)	ENSCLMG00005007195 #22	ENSCLMG00005007193 #22	ENSCLMG00005007192 #22	ENSCLMG00005007190	ENSCLMG00005007186	ENSCLMG00005006993	ENSCLMG00005006986 #25	zbtb14 (ENSCLMG00005006983)	ENSCLMG00005006980	ENSCLMG00005006977	ENSCLMG00005006622	gcm2 (ENSCLMG00005006618)	LRRC30 (ENSCLMG00005006615) #21	ENSCLMG00005006614	PTPRM (ENSCLMG00005005671) #20	ENSCLMG00005005618
Perciformes_a	ANCESTRAL SPECIES	108												ENSGT00940000158052.a.g	ENSGT00940000158929 #25	ENSGT00940000158264.a	ENSGT00530000063698.a.b.d.b	ENSGT00940000157124 #22	ENSGT00940000157047.m.a.a	ENSGT00940000154456.hb.b
Pike perch	MODERN SPECIES	310											ENSSLUG00000006844	zbtb14 (ENSSLUG00000006859)	ENSSLUG00000006897 #25	ENSSLUG00000006955	ENSSLUG00000007007	lama1 (ENSSLUG00000007182) #22	ENSSLUG00000008834	ENSSLUG00000008868
Channel bull blenny	DUPLICATION
Channel bull blenny	MODERN SPECIES	75																lama1 (ENSCGOG00000018641) #22	ENSCGOG00000017781
Channel bull blenny	MODERN SPECIES	283															ENSCGOG00000012280	ENSCGOG00000012250 #22
Ovalentaria	ANCESTRAL SPECIES	30																ENSGT00940000157124 #22	ENSGT00940000157047.m.a.a	ENSGT00940000154456.hb.b	ENSGT00530000063698.a.b.d.b	ENSGT00940000158264.a	ENSGT00940000158929 #25	ENSGT00940000158052.a.g	ENSGT00940000177091	ENSGT00530000063859.a	ENSGT00390000006777.b	ENSGT00940000164558.j.b	ENSGT00940000155020.u.a.b #20	ENSGT00940000155274	ENSGT00390000001844.a.a	ENSGT00940000158227	ENSGT01060000249006
Ovalentaria_B	ANCESTRAL SPECIES	47																ENSGT00940000157124 #22	ENSGT00940000157047.m.a.a	ENSGT00940000154456.hb.b	ENSGT00530000063698.a.b.d.b	ENSGT00940000158264.a	ENSGT00940000158929 #25	ENSGT00940000158052.a.g	ENSGT00940000177091	ENSGT00530000063859.a	ENSGT00390000006777.b	ENSGT00940000164558.j.b	ENSGT00940000155020.u.a.b #20	ENSGT00940000161979.B.o.cb.e	ENSGT01100000263489.a.a.b.a.a.b.b.b.b.b.b.a	ENSGT00940000171629	ENSGT00940000155274
Pomacentridae	ANCESTRAL SPECIES	155		ENSGT00940000165841	ENSGT00390000001844.a.a	ENSGT00940000155274	ENSGT00940000155020.u.a.b #20	ENSGT00940000164558.j.b	ENSGT00390000006777.b	ENSGT00530000063859.a	ENSGT00940000177091	ENSGT00940000158052.a.g	ENSGT00940000158929 #25	ENSGT00940000158264.a	ENSGT00530000063698.a.b.d.b	ENSGT00940000154456.hb.b	ENSGT00940000157047.m.a.a	ENSGT00940000157124 #22	ENSGT00950000183019.f.a.c.a	ENSGT01090000260003.a.b.b.a.a.b.a.b.a	ENSGT00940000158304	ENSGT00390000020445
Bicolor damselfish	DUPLICATION
Bicolor damselfish	DUPLICATION
Bicolor damselfish	MODERN SPECIES	2554														ENSSPAG00000000841	ENSSPAG00000000898 #22	ENSSPAG00000000957 #22	ENSSPAG00000001040 #22
Bicolor damselfish	MODERN SPECIES	2554															ENSSPAG00000000841	ENSSPAG00000000898 #22	ENSSPAG00000000957 #22	ENSSPAG00000001040 #22
Bicolor damselfish	MODERN SPECIES	2554													ENSSPAG00000000841	ENSSPAG00000000898 #22	ENSSPAG00000000957 #22	ENSSPAG00000001040 #22
Pomacentridae_A	ANCESTRAL SPECIES	254														ENSGT00940000154456.hb.b	ENSGT00940000157047.m.a.a	ENSGT00940000157124 #22	ENSGT00950000183019.f.a.c.a	ENSGT01090000260003.a.b.b.a.a.b.a.b.a	ENSGT00940000158304	ENSGT00390000020445
Amphiprion	ANCESTRAL SPECIES	223				ENSGT00940000155020.u.a.b #20	ENSGT00940000164558.j.b	ENSGT00390000006777.b	ENSGT00940000158052.a.g	ENSGT00940000158929.q.a #25	ENSGT00940000158929.q.b #25	ENSGT00940000158264.a	ENSGT00530000063698.a.b.d.b	ENSGT00940000154456.hb.b	ENSGT00390000016119	ENSGT00390000001763	ENSGT00940000157047.m.a.a	ENSGT00940000157124 #22	ENSGT00950000183019.f.a.c.a	ENSGT01090000260003.a.b.b.a.a.b.a.b.a	ENSGT00940000158304	ENSGT00390000020445
Orange clownfish	DUPLICATION
Orange clownfish	DUPLICATION
Orange clownfish	MODERN SPECIES	14	ENSAPEG00000000826	ENSAPEG00000000790	zbtb14 (ENSAPEG00000000754)	ARHGAP28 (ENSAPEG00000000702) #25	ENSAPEG00000000659	ENSAPEG00000000650	ENSAPEG00000000600	ENSAPEG00000000498	selenok (ENSAPEG00000000477)	actr8 (ENSAPEG00000000422)	ENSAPEG00000000318	ENSAPEG00000024828	ENSAPEG00000024827	ENSAPEG00000024826 #22	ENSAPEG00000024825 #22	ENSAPEG00000024824 #22	ENSAPEG00000024823	ENSAPEG00000024821	actr3b (ENSAPEG00000024820)	ENSAPEG00000024819	ENSAPEG00000024818	ENSAPEG00000024817	ENSAPEG00000024816	ENSAPEG00000024814	ENSAPEG00000024813	ENSAPEG00000024812	cavin4b (ENSAPEG00000024810)	ENSAPEG00000024803 #20	ENSAPEG00000024797	ENSAPEG00000024795	chodl (ENSAPEG00000024787)
Orange clownfish	MODERN SPECIES	14	ENSAPEG00000000974	ENSAPEG00000000867	ENSAPEG00000000826	ENSAPEG00000000790	zbtb14 (ENSAPEG00000000754)	ARHGAP28 (ENSAPEG00000000702) #25	ENSAPEG00000000659	ENSAPEG00000000650	ENSAPEG00000000600	ENSAPEG00000000498	selenok (ENSAPEG00000000477)	actr8 (ENSAPEG00000000422)	ENSAPEG00000000318	ENSAPEG00000024828	ENSAPEG00000024827	ENSAPEG00000024826 #22	ENSAPEG00000024825 #22	ENSAPEG00000024824 #22	ENSAPEG00000024823	ENSAPEG00000024821	actr3b (ENSAPEG00000024820)	ENSAPEG00000024819	ENSAPEG00000024818	ENSAPEG00000024817	ENSAPEG00000024816	ENSAPEG00000024814	ENSAPEG00000024813	ENSAPEG00000024812	cavin4b (ENSAPEG00000024810)	ENSAPEG00000024803 #20	ENSAPEG00000024797
Orange clownfish	MODERN SPECIES	14	ENSAPEG00000000867	ENSAPEG00000000826	ENSAPEG00000000790	zbtb14 (ENSAPEG00000000754)	ARHGAP28 (ENSAPEG00000000702) #25	ENSAPEG00000000659	ENSAPEG00000000650	ENSAPEG00000000600	ENSAPEG00000000498	selenok (ENSAPEG00000000477)	actr8 (ENSAPEG00000000422)	ENSAPEG00000000318	ENSAPEG00000024828	ENSAPEG00000024827	ENSAPEG00000024826 #22	ENSAPEG00000024825 #22	ENSAPEG00000024824 #22	ENSAPEG00000024823	ENSAPEG00000024821	actr3b (ENSAPEG00000024820)	ENSAPEG00000024819	ENSAPEG00000024818	ENSAPEG00000024817	ENSAPEG00000024816	ENSAPEG00000024814	ENSAPEG00000024813	ENSAPEG00000024812	cavin4b (ENSAPEG00000024810)	ENSAPEG00000024803 #20	ENSAPEG00000024797	ENSAPEG00000024795
Clown anemonefish	DUPLICATION
Clown anemonefish	MODERN SPECIES	3390															ENSAOCG00000009898	lama1 (ENSAOCG00000009822) #22	ENSAOCG00000009712 #22	ENSAOCG00000009686	ENSAOCG00000009653
Clown anemonefish	MODERN SPECIES	3390														ENSAOCG00000009898	lama1 (ENSAOCG00000009822) #22	ENSAOCG00000009712 #22	ENSAOCG00000009686	ENSAOCG00000009653
Spiny chromis	MODERN SPECIES	1471														ENSAPOG00000005143	ENSAPOG00000005254	lama1 (ENSAPOG00000005460) #22	ENSAPOG00000006000	ENSAPOG00000006095	actr3b (ENSAPOG00000006165)	ENSAPOG00000006191
Cichlidae	ANCESTRAL SPECIES	59	ENSGT00940000159246	ENSGT00940000160233	ENSGT00390000008042.A.a.a	ENSGT00390000002579	ENSGT00940000154539.a.a	ENSGT00390000012668.g.a	ENSGT00950000182955.a.a.a.g	ENSGT00940000159827.f	ENSGT00940000161762	ENSGT00940000155331.A.e	ENSGT00940000170561.b	ENSGT00940000161639.e	ENSGT00940000158676	ENSGT00390000016416	ENSGT00940000155299.A	ENSGT00940000157124 #22	ENSGT00940000157047.m.a.a	ENSGT00530000063698.a.b.d.b	ENSGT00940000158264.a	ENSGT00940000158929 #25	ENSGT00530000063186.b.a	ENSGT00390000015821	ENSGT00940000154014.a	ENSGT00940000158294.g.a	ENSGT01090000260052.b.b.b.i	ENSGT01090000260052.b.b.b.j	ENSGT00940000153769.B	ENSGT00520000055637.B	ENSGT00940000161826.B	ENSGT00390000007109
Pseudocrenilabrinae	ANCESTRAL SPECIES	40										ENSGT00940000155331.A.e	ENSGT00940000170561.b	ENSGT00940000161639.e	ENSGT00940000158676	ENSGT00390000016416	ENSGT00940000155299.A	ENSGT00940000157124 #22	ENSGT00940000157047.m.a.a	ENSGT00530000063698.a.b.d.b	ENSGT00940000158264.a	ENSGT00940000158929 #25	ENSGT00530000063186.b.a	ENSGT00390000015821	ENSGT00940000154014.a	ENSGT00940000158294.g.a	ENSGT01090000260052.b.b.b.i	ENSGT01090000260052.b.b.b.j	ENSGT00940000153769.B	ENSGT00520000055637.B	ENSGT00940000161826.B	ENSGT00390000007109	ENSGT00950000183207.a
Nile tilapia	MODERN SPECIES	21	ENSONIG00000037900	ENSONIG00000030819	ENSONIG00000041105	vstm2a (ENSONIG00000028028)	ENSONIG00000028425	ENSONIG00000028426	ENSONIG00000041920	ENSONIG00000037540	ENSONIG00000033206	ENSONIG00000032178	C1QL3 (ENSONIG00000035713)	RSU1 (ENSONIG00000015101)	ENSONIG00000036182	trdmt1 (ENSONIG00000033090)	CUBN (ENSONIG00000015103)	lama1 (ENSONIG00000015109) #22	ENSONIG00000041365	EPB41L3 (ENSONIG00000015117)	TMEM200C (ENSONIG00000015119)	L3MBTL4 (ENSONIG00000015120)	ARHGAP28 (ENSONIG00000015121) #25	lancl2 (ENSONIG00000015123)	vopp1 (ENSONIG00000015127)	stk17a (ENSONIG00000015129)	ENSONIG00000032486	HECW1 (ENSONIG00000015132)	ENSONIG00000040946	ENSONIG00000040862	ENSONIG00000040180	ENSONIG00000038333	SLC12A7 (ENSONIG00000003786)
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	52										ENSGT00940000155331.A.e	ENSGT00940000170561.b	ENSGT00940000161639.e	ENSGT00940000158676	ENSGT00390000016416	ENSGT00940000155299.A	ENSGT00940000157124 #22	ENSGT00940000157047.m.a.a	ENSGT00530000063698.a.b.d.b	ENSGT00940000158264.a	ENSGT00940000158929 #25	ENSGT00530000063186.b.a	ENSGT00390000015821	ENSGT00940000154014.a	ENSGT00940000158294.g.a	ENSGT01090000260052.b.b.b.i	ENSGT01090000260052.b.b.b.j	ENSGT00940000153769.B	ENSGT00520000055637.B	ENSGT00940000161826.B	ENSGT00390000007109	ENSGT00950000183207.a
Lyretail cichlid	DUPLICATION
Lyretail cichlid	MODERN SPECIES	365									ENSNBRG00000015928	ENSNBRG00000016038	C1QL3 (ENSNBRG00000016053)	RSU1 (ENSNBRG00000016085)	trdmt1 (ENSNBRG00000016114)	CUBN (ENSNBRG00000016186)	ENSNBRG00000016498 #22	ENSNBRG00000016544 #22	EPB41L3 (ENSNBRG00000016568)	ENSNBRG00000016607	ENSNBRG00000016648 #25	ENSNBRG00000016678	HECW1 (ENSNBRG00000016700)	ENSNBRG00000016779	ENSNBRG00000016801	ENSNBRG00000016821	ENSNBRG00000017124	ENSNBRG00000017151	ENSNBRG00000017216	ift74 (ENSNBRG00000017236)	aoc1 (ENSNBRG00000017266)	ENSNBRG00000017324	ENSNBRG00000017400
Lyretail cichlid	MODERN SPECIES	365										ENSNBRG00000015928	ENSNBRG00000016038	C1QL3 (ENSNBRG00000016053)	RSU1 (ENSNBRG00000016085)	trdmt1 (ENSNBRG00000016114)	CUBN (ENSNBRG00000016186)	ENSNBRG00000016498 #22	ENSNBRG00000016544 #22	EPB41L3 (ENSNBRG00000016568)	ENSNBRG00000016607	ENSNBRG00000016648 #25	ENSNBRG00000016678	HECW1 (ENSNBRG00000016700)	ENSNBRG00000016779	ENSNBRG00000016801	ENSNBRG00000016821	ENSNBRG00000017124	ENSNBRG00000017151	ENSNBRG00000017216	ift74 (ENSNBRG00000017236)	aoc1 (ENSNBRG00000017266)	ENSNBRG00000017324
Haplochromini	ANCESTRAL SPECIES	87										ENSGT00940000155331.A.e	ENSGT00940000170561.b	ENSGT00940000161639.e	ENSGT00940000158676	ENSGT00390000016416	ENSGT00940000155299.A	ENSGT00940000157124 #22	ENSGT00940000157047.m.a.a	ENSGT00530000063698.a.b.d.b	ENSGT00940000158264.a	ENSGT00940000158929 #25	ENSGT00530000063186.b.a	ENSGT00390000015821	ENSGT00940000154014.a	ENSGT00940000158294.g.a
Burton s mouthbrooder	MODERN SPECIES	577									ENSHBUG00000006719	ENSHBUG00000006737	ENSHBUG00000006745	C1QL3 (ENSHBUG00000006757)	RSU1 (ENSHBUG00000006791)	trdmt1 (ENSHBUG00000006822)	CUBN (ENSHBUG00000006868)	lama1 (ENSHBUG00000008075) #22	EPB41L3 (ENSHBUG00000008236)	TMEM200C (ENSHBUG00000008257)	L3MBTL4 (ENSHBUG00000008332)	ARHGAP28 (ENSHBUG00000008464) #25	lancl2 (ENSHBUG00000008532)	ENSHBUG00000008543	stk17a (ENSHBUG00000008567)	HECW1 (ENSHBUG00000008660)
Haplochromini_A	ANCESTRAL SPECIES	92										ENSGT00940000155331.A.e	ENSGT00940000170561.b	ENSGT00940000161639.e	ENSGT00940000158676	ENSGT00390000016416	ENSGT00940000155299.A	ENSGT00940000157124 #22	ENSGT00940000157047.m.a.a	ENSGT00530000063698.a.b.d.b	ENSGT00940000158264.a	ENSGT00940000158929 #25	ENSGT00530000063186.b.a	ENSGT00390000015821	ENSGT00940000154014.a	ENSGT00940000158294.g.a
Haplochromini_B	ANCESTRAL SPECIES	113											ENSGT00940000170561.b	ENSGT00940000161639.e	ENSGT00940000158676	ENSGT00390000016416	ENSGT00940000155299.A	ENSGT00940000157124 #22	ENSGT00940000157047.m.a.a	ENSGT00530000063698.a.b.d.b	ENSGT00940000158264.a	ENSGT00940000158929 #25	ENSGT00530000063186.b.a	ENSGT00390000015821	ENSGT00940000154014.a	ENSGT00940000158294.g.a
Zebra mbuna	DUPLICATION
Zebra mbuna	DUPLICATION
Zebra mbuna	MODERN SPECIES	792															ENSMZEG00005028368 #22	ENSMZEG00005028372 #22
Zebra mbuna	MODERN SPECIES	792																ENSMZEG00005028368 #22	ENSMZEG00005028372 #22
Zebra mbuna	MODERN SPECIES	1112	ARHGAP12 (ENSMZEG00005016532)	zeb1b (ENSMZEG00005016493)	znf438 (ENSMZEG00005016471)	ENSMZEG00005016456	MAP3K8 (ENSMZEG00005016425)	MTPAP (ENSMZEG00005016416)	ENSMZEG00005016403	bambia (ENSMZEG00005016371)	waca (ENSMZEG00005016365)	ENSMZEG00005016353	ENSMZEG00005016344	C1QL3 (ENSMZEG00005016340)	RSU1 (ENSMZEG00005016326)	trdmt1 (ENSMZEG00005016311)	CUBN (ENSMZEG00005016230)	lama1 (ENSMZEG00005015854) #22	EPB41L3 (ENSMZEG00005015754)	L3MBTL4 (ENSMZEG00005015727)	ENSMZEG00005015707 #25	lancl2 (ENSMZEG00005015694)	ENSMZEG00005015689	stk17a (ENSMZEG00005015675)	HECW1 (ENSMZEG00005015641)	RECK (ENSMZEG00005015596)	hccsb (ENSMZEG00005015572)	ptbp2a (ENSMZEG00005015545)	ENSMZEG00005015536	ENSMZEG00005015523	ENSMZEG00005015514	ENSMZEG00005015504	ENSMZEG00005015500
Eastern happy	MODERN SPECIES	21	MAP3K8 (ENSACLG00000009926)	ENSACLG00000009888	znf438 (ENSACLG00000009882)	zeb1b (ENSACLG00000009867)	ARHGAP12 (ENSACLG00000009770)	KIF5B (ENSACLG00000009432)	GFOD1 (ENSACLG00000009421)	SLC12A7 (ENSACLG00000009248)	ENSACLG00000008889	ENSACLG00000008573	ENSACLG00000007996	C1QL3 (ENSACLG00000007983)	RSU1 (ENSACLG00000007951)	trdmt1 (ENSACLG00000007922)	CUBN (ENSACLG00000007540)	lama1 (ENSACLG00000007435) #22	EPB41L3 (ENSACLG00000007329)	TMEM200C (ENSACLG00000007313)	L3MBTL4 (ENSACLG00000007292)	ARHGAP28 (ENSACLG00000007223) #25	lancl2 (ENSACLG00000007204)	ENSACLG00000007172	stk17a (ENSACLG00000007150)	HECW1 (ENSACLG00000007102)	ENSACLG00000006970	ENSACLG00000006966	ENSACLG00000006558	ENSACLG00000006548	ENSACLG00000006543	ENSACLG00000006538	ENSACLG00000006293
P. nyererei	MODERN SPECIES	493									ENSPNYG00000004175	ENSPNYG00000004216	C1QL3 (ENSPNYG00000004233)	RSU1 (ENSPNYG00000004253)	trdmt1 (ENSPNYG00000004287)	CUBN (ENSPNYG00000004325)	ENSPNYG00000004499	lama1 (ENSPNYG00000004701) #22	ENSPNYG00000005746	ENSPNYG00000005759	ARHGAP28 (ENSPNYG00000005788) #25	lancl2 (ENSPNYG00000005867)	VOPP1 (ENSPNYG00000005905)	stk17a (ENSPNYG00000005932)	HECW1 (ENSPNYG00000005969)
Midas cichlid	MODERN SPECIES	746	f3a (ENSACIG00000022649)	ENSACIG00000022660	abcd3a (ENSACIG00000022677)	ENSACIG00000022695	neurod6a (ENSACIG00000022701)	ENSACIG00000022708	ENSACIG00000022719	ENSACIG00000022726	ENSACIG00000022736	ENSACIG00000022746	C1QL3 (ENSACIG00000022751)	ENSACIG00000022757	RSU1 (ENSACIG00000022767)	trdmt1 (ENSACIG00000022773)	CUBN (ENSACIG00000022789)	lama1 (ENSACIG00000022855) #22	ENSACIG00000022897	EPB41L3 (ENSACIG00000022917)	L3MBTL4 (ENSACIG00000022942)	ARHGAP28 (ENSACIG00000022957) #25	ENSACIG00000022969	lancl2 (ENSACIG00000022978)	VOPP1 (ENSACIG00000022990)	stk17a (ENSACIG00000023007)	HECW1 (ENSACIG00000023048)
Atherinomorphae	ANCESTRAL SPECIES	19																ENSGT00940000157124 #22	ENSGT00940000157047.m.a.a	ENSGT00530000063698.a.b.d.b	ENSGT00940000158264.a	ENSGT00940000158929 #25	ENSGT00940000158052.a.g	ENSGT00940000177091	ENSGT00390000006777.b	ENSGT00940000164558.j.b	ENSGT00940000155020.u.a.b #20	ENSGT00940000155274	ENSGT00390000001844.a.a	ENSGT00940000158227	ENSGT00940000158304	ENSGT00390000020445	ENSGT00940000156210.d
Cyprinodontiformes	ANCESTRAL SPECIES	73																ENSGT00940000157124 #22	ENSGT00940000157047.m.a.a	ENSGT00530000063698.a.b.d.b	ENSGT00940000158264.a	ENSGT00940000158929 #25	ENSGT00940000158052.a.g	ENSGT00940000177091	ENSGT00390000006777.b	ENSGT00940000164558.j.b	ENSGT00940000155020.u.a.b #20	ENSGT00940000171629	ENSGT00940000155274	ENSGT00390000001844.a.a	ENSGT00940000165841	ENSGT00940000158304	ENSGT00390000020445
Aplocheiloidei	ANCESTRAL SPECIES																	ENSGT00940000157124 #22
Mangrove rivulus	MODERN SPECIES	818																ENSKMAG00000021970 #22
Cyprinodontoidei	ANCESTRAL SPECIES	83																ENSGT00940000157124 #22	ENSGT00940000157047.m.a.a	ENSGT00530000063698.a.b.d.b	ENSGT00940000158264.a	ENSGT00940000158929 #25	ENSGT00940000158052.a.g	ENSGT00940000177091	ENSGT00530000063859.a	ENSGT01090000260059.a.b.a.a.a	ENSGT00390000006777.b	ENSGT00940000164558.j.b	ENSGT00940000155020.u.a.b #20	ENSGT00940000171629	ENSGT00940000155274	ENSGT00390000001844.a.a	ENSGT00940000165841
Poeciliinae	ANCESTRAL SPECIES	33	ENSGT00940000157289.a	ENSGT01030000236335	ENSGT00940000163747	ENSGT00940000156770	ENSGT00390000007627	ENSGT00390000006452.a	ENSGT00940000159977	ENSGT00940000157116.f	ENSGT00940000157866	ENSGT00940000156210.d	ENSGT01000000214434.D	ENSGT00390000010557	ENSGT00940000159301.c.a	ENSGT00940000159945	ENSGT00940000155105	ENSGT00940000157124 #22	ENSGT00940000157047.m.a.a	ENSGT00530000063698.a.b.d.b	ENSGT00940000158264.a	ENSGT00940000158929 #25	ENSGT00940000158052.a.g	ENSGT00940000177091	ENSGT01090000260059.a.b.a.a.a.a	ENSGT00530000063859.a	ENSGT00390000006777.b	ENSGT00940000164558.j.b	ENSGT00940000155020.u.a.b #20	ENSGT00940000165633	ENSGT00940000155274	ENSGT00390000001844.a.a	ENSGT00940000165841
Platyfish	DUPLICATION
Platyfish	MODERN SPECIES	13	ENSXMAG00000026874	NRN1 (ENSXMAG00000022317)	fars2 (ENSXMAG00000027185)	LYRM4 (ENSXMAG00000018189)	cyb5a (ENSXMAG00000001579)	ENSXMAG00000001582	dipk1c (ENSXMAG00000025556)	inhbaa (ENSXMAG00000019496)	sugct (ENSXMAG00000023171)	acvr2ba (ENSXMAG00000014092)	xylb (ENSXMAG00000014136)	ENSXMAG00000014164	crygn2 (ENSXMAG00000021585)	eci2 (ENSXMAG00000021451)	ENSXMAG00000029204	ENSXMAG00000025858 #22	ENSXMAG00000029359 #22	EPB41L3 (ENSXMAG00000014334)	TMEM200C (ENSXMAG00000023390)	L3MBTL4 (ENSXMAG00000014347)	ARHGAP28 (ENSXMAG00000014359) #25	zbtb14 (ENSXMAG00000023917)	ENSXMAG00000006035	ENSXMAG00000014378	ENSXMAG00000020349	ENSXMAG00000002726	lrrc30a (ENSXMAG00000002735) #21	ENSXMAG00000002749 #20	ENSXMAG00000008079	ENSXMAG00000009291	galnt11 (ENSXMAG00000009292)
Platyfish	MODERN SPECIES	13	NRN1 (ENSXMAG00000022317)	fars2 (ENSXMAG00000027185)	LYRM4 (ENSXMAG00000018189)	cyb5a (ENSXMAG00000001579)	ENSXMAG00000001582	dipk1c (ENSXMAG00000025556)	inhbaa (ENSXMAG00000019496)	sugct (ENSXMAG00000023171)	acvr2ba (ENSXMAG00000014092)	xylb (ENSXMAG00000014136)	ENSXMAG00000014164	crygn2 (ENSXMAG00000021585)	eci2 (ENSXMAG00000021451)	ENSXMAG00000029204	ENSXMAG00000025858 #22	ENSXMAG00000029359 #22	EPB41L3 (ENSXMAG00000014334)	TMEM200C (ENSXMAG00000023390)	L3MBTL4 (ENSXMAG00000014347)	ARHGAP28 (ENSXMAG00000014359) #25	zbtb14 (ENSXMAG00000023917)	ENSXMAG00000006035	ENSXMAG00000014378	ENSXMAG00000020349	ENSXMAG00000002726	lrrc30a (ENSXMAG00000002735) #21	ENSXMAG00000002749 #20	ENSXMAG00000008079	ENSXMAG00000009291	galnt11 (ENSXMAG00000009292)	ENSXMAG00000007096
Poecilia	ANCESTRAL SPECIES	60	ENSGT00940000158071	ENSGT00940000168147	ENSGT01030000236335	ENSGT00940000163747	ENSGT00940000156770	ENSGT00390000007627	ENSGT00390000006452.a	ENSGT00940000159115	ENSGT00940000157116.f	ENSGT00940000157866	ENSGT01000000214434.D	ENSGT00390000010557	ENSGT00940000159301.c.a	ENSGT00940000159945	ENSGT00940000155105	ENSGT00940000157124 #22	ENSGT00940000157047.m.a.a	ENSGT00530000063698.a.b.d.b	ENSGT00940000158264.a	ENSGT00940000158929 #25	ENSGT00940000158052.a.g	ENSGT00940000177091	ENSGT01090000260059.a.b.a.a.a.a	ENSGT00530000063859.a	ENSGT00390000006777.b	ENSGT00940000164558.j.b	ENSGT00940000155020.u.a.b #20	ENSGT00940000165633	ENSGT00940000155274	ENSGT00390000001844.a.a	ENSGT00940000165841
Guppy	DUPLICATION
Guppy	MODERN SPECIES	6					ENSPREG00000009649	ENSPREG00000009656	ENSPREG00000009665	inhbaa (ENSPREG00000009685)	ENSPREG00000009703	sugct (ENSPREG00000009712)	xylb (ENSPREG00000009743)	ENSPREG00000009829	crygn (ENSPREG00000009878)	eci2 (ENSPREG00000009973)	ENSPREG00000010017 #22	ENSPREG00000010107 #22	ENSPREG00000010139	TMEM200C (ENSPREG00000010242)	ENSPREG00000010262	ARHGAP28 (ENSPREG00000010289) #25	ENSPREG00000010312	ENSPREG00000010324	ENSPREG00000010339	gnal (ENSPREG00000010351)	ENSPREG00000010361	ENSPREG00000010383	ENSPREG00000010408	ENSPREG00000010452	ENSPREG00000010480 #20	ENSPREG00000010499	chodl (ENSPREG00000010529)
Guppy	MODERN SPECIES	6						ENSPREG00000009649	ENSPREG00000009656	ENSPREG00000009665	inhbaa (ENSPREG00000009685)	ENSPREG00000009703	sugct (ENSPREG00000009712)	xylb (ENSPREG00000009743)	ENSPREG00000009829	crygn (ENSPREG00000009878)	eci2 (ENSPREG00000009973)	ENSPREG00000010017 #22	ENSPREG00000010107 #22	ENSPREG00000010139	TMEM200C (ENSPREG00000010242)	ENSPREG00000010262	ARHGAP28 (ENSPREG00000010289) #25	ENSPREG00000010312	ENSPREG00000010324	ENSPREG00000010339	gnal (ENSPREG00000010351)	ENSPREG00000010361	ENSPREG00000010383	ENSPREG00000010408	ENSPREG00000010452	ENSPREG00000010480 #20	ENSPREG00000010499
NAME_6	ANCESTRAL SPECIES	212				ENSGT00940000163747	ENSGT00940000156770	ENSGT00390000007627	ENSGT00390000006452.a	ENSGT00940000159977	ENSGT00940000157116.f	ENSGT00940000157866	ENSGT01000000214434.D	ENSGT00390000010557	ENSGT00940000159301.c.a	ENSGT00940000159945	ENSGT00940000155105	ENSGT00940000157124 #22	ENSGT00940000157047.m.a.a	ENSGT00530000063698.a.b.d.b	ENSGT00940000158264.a	ENSGT00940000158929 #25	ENSGT00940000158052.a.g	ENSGT00940000155271.lb	ENSGT00940000177091	ENSGT01090000260059.a.b.a.a.a.a	ENSGT00530000063859.a	ENSGT00390000006777.b	ENSGT00940000164558.j.b	ENSGT00940000155020.u.a.b #20
Sailfin molly	DUPLICATION
Sailfin molly	MODERN SPECIES	1367										sugct (ENSPLAG00000016604)	xylb (ENSPLAG00000016634)	NUB1 (ENSPLAG00000016649)	crygn2 (ENSPLAG00000016720)	RHEB (ENSPLAG00000016748)	eci2 (ENSPLAG00000016904)	lama1 (ENSPLAG00000017596) #22	ENSPLAG00000017669 #22	ENSPLAG00000017729	ENSPLAG00000017739
Sailfin molly	MODERN SPECIES	1367									sugct (ENSPLAG00000016604)	xylb (ENSPLAG00000016634)	NUB1 (ENSPLAG00000016649)	crygn2 (ENSPLAG00000016720)	RHEB (ENSPLAG00000016748)	eci2 (ENSPLAG00000016904)	lama1 (ENSPLAG00000017596) #22	ENSPLAG00000017669 #22	ENSPLAG00000017729	ENSPLAG00000017739
Amazon molly	MODERN SPECIES	654	ENSPFOG00000022924	dipk1c (ENSPFOG00000011631)	tubb6 (ENSPFOG00000011581)	ENSPFOG00000011527	ENSPFOG00000011519	inhbaa (ENSPFOG00000011489)	ENSPFOG00000011483	ENSPFOG00000024160	sugct (ENSPFOG00000011341)	xylb (ENSPFOG00000011144)	NUB1 (ENSPFOG00000011058)	crygn2 (ENSPFOG00000011019)	ENSPFOG00000023279	PRKAG2 (ENSPFOG00000010785)	eci2 (ENSPFOG00000010760)	lama1 (ENSPFOG00000009921) #22	EPB41L3 (ENSPFOG00000009502)	TMEM200C (ENSPFOG00000009479)	ARHGAP28 (ENSPFOG00000021914) #25	L3MBTL4 (ENSPFOG00000009224)	ARHGAP28 (ENSPFOG00000009104) #25	zbtb14 (ENSPFOG00000009055)	ENSPFOG00000008884	ENSPFOG00000008877	ENSPFOG00000008781	ENSPFOG00000008659	ENSPFOG00000024391 #20
NAME_4	ANCESTRAL SPECIES	335																ENSGT00940000157124 #22	ENSGT00940000157047.m.a.a	ENSGT00530000063698.a.b.d.b	ENSGT00940000158264.a.h	ENSGT00940000158929 #25	ENSGT00940000158052.a.g	ENSGT00940000177091	ENSGT01090000260059.a.b.a.a.a	ENSGT00390000006777.b
Mummichog	DUPLICATION
Mummichog	MODERN SPECIES	824										sugct (ENSFHEG00000007505)	acvr2ba (ENSFHEG00000007446)	xylb (ENSFHEG00000007397)	ENSFHEG00000007328	ENSFHEG00000007322	eci2 (ENSFHEG00000007309)	ENSFHEG00000007294 #22	ENSFHEG00000007243 #22	ENSFHEG00000007221
Mummichog	MODERN SPECIES	824									sugct (ENSFHEG00000007505)	acvr2ba (ENSFHEG00000007446)	xylb (ENSFHEG00000007397)	ENSFHEG00000007328	ENSFHEG00000007322	eci2 (ENSFHEG00000007309)	ENSFHEG00000007294 #22	ENSFHEG00000007243 #22	ENSFHEG00000007221
Sheepshead minnow	DUPLICATION
Sheepshead minnow	DUPLICATION
Sheepshead minnow	MODERN SPECIES	1518						sugct (ENSCVAG00000020437)	acvr2ba (ENSCVAG00000020474)	xylb (ENSCVAG00000020495)	ENSCVAG00000020508	ENSCVAG00000020516	ENSCVAG00000020522	ENSCVAG00000020580	crygn2 (ENSCVAG00000020614)	eci2 (ENSCVAG00000020650)	ENSCVAG00000020693 #22	ENSCVAG00000020736 #22
Sheepshead minnow	MODERN SPECIES	1518							sugct (ENSCVAG00000020437)	acvr2ba (ENSCVAG00000020474)	xylb (ENSCVAG00000020495)	ENSCVAG00000020508	ENSCVAG00000020516	ENSCVAG00000020522	ENSCVAG00000020580	crygn2 (ENSCVAG00000020614)	eci2 (ENSCVAG00000020650)	ENSCVAG00000020693 #22	ENSCVAG00000020736 #22
Sheepshead minnow	MODERN SPECIES	1135																ENSCVAG00000023253 #22	EPB41L3 (ENSCVAG00000023301)	ENSCVAG00000003122	ENSCVAG00000003129	ENSCVAG00000003140	ENSCVAG00000003147	ARHGAP28 (ENSCVAG00000004297) #25	ENSCVAG00000004344	ENSCVAG00000004378	ENSCVAG00000004385	ENSCVAG00000004422	ENSCVAG00000004453	ENSCVAG00000004474	ENSCVAG00000004480