Mus_A	ANCESTRAL SPECIES	9	ENSGT00390000001301 #7	ENSGT00940000155719.b #8	ENSGT00940000155116.b #9	ENSGT00950000183055.b.a #10	ENSGT00940000157323 #11	ENSGT00390000008458 #12	ENSGT00940000161583 #13	ENSGT00390000008984 #14	ENSGT00940000162309 #15	ENSGT00390000010494 #16	ENSGT00390000003555 #17	ENSGT00940000156842 #18	ENSGT00640000091487 #19	ENSGT01060000248588.a.c.b #20	ENSGT00390000012346 #21	ENSGT00940000155372 #22	ENSGT00950000183130.A #23	ENSGT01010000222815	ENSGT00860000136163 #24	ENSGT00940000155988 #25	ENSGT00950000183169.C #27	ENSGT00940000157312 #28	ENSGT00940000153661.a.a ##29	ENSGT00940000153661.b.b #29	ENSGT00940000156941 #30	ENSGT00940000154552.b #31	ENSGT00940000156162.C.k #32	ENSGT00940000160614 #33	ENSGT00940000154384.h.b.f #34	ENSGT00950000183189.a.b.a #35	ENSGT00390000015010 #36
Ryukyu mouse	MODERN SPECIES	12	Intu (MGP_CAROLIEiJ_G0024956) #7	Fat4 (MGP_CAROLIEiJ_G0024955) #8	Ankrd50 (MGP_CAROLIEiJ_G0024954) #9	Spry1 (MGP_CAROLIEiJ_G0024952) #10	Spata5 (MGP_CAROLIEiJ_G0024951) #11	Nudt6 (MGP_CAROLIEiJ_G0024950) #12	Fgf2 (MGP_CAROLIEiJ_G0024949) #13	Bbs12 (MGP_CAROLIEiJ_G0024948) #14	Cetn4 (MGP_CAROLIEiJ_G0024947) #15	Il21 (MGP_CAROLIEiJ_G0024946) #16	Il2 (MGP_CAROLIEiJ_G0024945) #17	Adad1 (MGP_CAROLIEiJ_G0024944) #18	Bltp1 (MGP_CAROLIEiJ_G0024943) #19	Trpc3 (MGP_CAROLIEiJ_G0024942) #20	Bbs7 (MGP_CAROLIEiJ_G0024941) #21	Ccna2 (MGP_CAROLIEiJ_G0024940) #22	Exosc9 (MGP_CAROLIEiJ_G0024939) #23	MGP_CAROLIEiJ_G0024938 #24	Anxa5 (MGP_CAROLIEiJ_G0024937) #25	Qrfpr (MGP_CAROLIEiJ_G0024936) #26	Zfp267 (MGP_CAROLIEiJ_G0024935) #27	MGP_CAROLIEiJ_G0024934 #28	MGP_CAROLIEiJ_G0024933 #29	Mccc1 (MGP_CAROLIEiJ_G0024932) #30	MGP_CAROLIEiJ_G0024931 #31	Atp11b (MGP_CAROLIEiJ_G0024930) #32	Sox2 (MGP_CAROLIEiJ_G0024929) #33	MGP_CAROLIEiJ_G0024928 #34	Fxr1 (MGP_CAROLIEiJ_G0024927) #35	Ccdc39 (MGP_CAROLIEiJ_G0024926) #36	Ttc14 (MGP_CAROLIEiJ_G0024925) #37
Mus_B	ANCESTRAL SPECIES	8	ENSGT00390000001301 #7	ENSGT00940000155719.b #8	ENSGT00940000155116.b #9	ENSGT00950000183055.b.a #10	ENSGT00940000157323 #11	ENSGT00390000008458 #12	ENSGT00940000161583 #13	ENSGT00390000008984 #14	ENSGT00940000162309 #15	ENSGT00390000010494 #16	ENSGT00390000003555 #17	ENSGT00940000156842 #18	ENSGT00640000091487 #19	ENSGT01060000248588.a.c.b #20	ENSGT00390000012346 #21	ENSGT00940000155372 #22	ENSGT00950000183130.A #23	ENSGT01010000222815	ENSGT00860000136163 #24	ENSGT00940000155988 #25	ENSGT00950000183169.C #27	ENSGT00940000157312 #28	ENSGT00940000153661.a.a ##29	ENSGT00940000156941 #30	ENSGT00940000154552.b #31	ENSGT00940000156162.C.k #32	ENSGT00940000160614 #33	ENSGT00940000154384.h.b.f #34	ENSGT00950000183189.a.b.a #35	ENSGT00390000015010 #36	ENSGT00390000013701 #37
Mus_C	ANCESTRAL SPECIES	6	ENSGT00940000160648	ENSGT00390000001301 #7	ENSGT00940000155116.b #9	ENSGT00950000183055.b.a #10	ENSGT00940000157323 #11	ENSGT00390000008458 #12	ENSGT00940000161583 #13	ENSGT00390000008984 #14	ENSGT00940000162309 #15	ENSGT00390000010494 #16	ENSGT00390000003555 #17	ENSGT00940000156842 #18	ENSGT00640000091487 #19	ENSGT01060000248588.a.c.b #20	ENSGT00390000012346 #21	ENSGT00940000155372 #22	ENSGT00950000183130.A #23	ENSGT01010000222815	ENSGT00860000136163 #24	ENSGT00940000155988 #25	ENSGT00950000183169.C #27	ENSGT00940000157312 #28	ENSGT00940000153661.a.a ##29	ENSGT00940000156941 #30	ENSGT00940000154552.b #31	ENSGT00940000156162.C.k #32	ENSGT00940000160614 #33	ENSGT00940000154384.h.b.f #34	ENSGT00950000183189.a.b.a #35	ENSGT00390000015010 #36	ENSGT00390000013701 #37
spretus	MODERN SPECIES	12	Intu (MGP_SPRETEiJ_G0025890) #7	Fat4 (MGP_SPRETEiJ_G0025889) #8	Ankrd50 (MGP_SPRETEiJ_G0025888) #9	Spry1 (MGP_SPRETEiJ_G0025886) #10	Spata5 (MGP_SPRETEiJ_G0025885) #11	Nudt6 (MGP_SPRETEiJ_G0025884) #12	Fgf2 (MGP_SPRETEiJ_G0025883) #13	Bbs12 (MGP_SPRETEiJ_G0025882) #14	Cetn4 (MGP_SPRETEiJ_G0025881) #15	Il21 (MGP_SPRETEiJ_G0025880) #16	Il2 (MGP_SPRETEiJ_G0025879) #17	MGP_SPRETEiJ_G0025878 #18	MGP_SPRETEiJ_G0025877 #19	Trpc3 (MGP_SPRETEiJ_G0025876) #20	Bbs7 (MGP_SPRETEiJ_G0025875) #21	Ccna2 (MGP_SPRETEiJ_G0025874) #22	Exosc9 (MGP_SPRETEiJ_G0025873) #23	MGP_SPRETEiJ_G0025872 #24	Anxa5 (MGP_SPRETEiJ_G0025871) #25	Qrfpr (MGP_SPRETEiJ_G0025870) #26	Zfp267 (MGP_SPRETEiJ_G0025869) #27	Acad9 (MGP_SPRETEiJ_G0025868) #28	MGP_SPRETEiJ_G0025867 ##29	Mccc1 (MGP_SPRETEiJ_G0025866) #30	MGP_SPRETEiJ_G0025865 #31	Atp11b (MGP_SPRETEiJ_G0025864) #32	Sox2 (MGP_SPRETEiJ_G0025863) #33	Dnajc19 (MGP_SPRETEiJ_G0025862) #34	Fxr1 (MGP_SPRETEiJ_G0025861) #35	Ccdc39 (MGP_SPRETEiJ_G0025860) #36	Ttc14 (MGP_SPRETEiJ_G0025859) #37
Steppe mouse	MODERN SPECIES	2979		Spry1 (ENSMSIG00000011699) #10	Spata5 (ENSMSIG00000011608) #11	Nudt6 (ENSMSIG00000011537) #12	Fgf2 (ENSMSIG00000011514) #13	ENSMSIG00000011508	Bbs12 (ENSMSIG00000011504) #14	ENSMSIG00000011420 #15	Il21 (ENSMSIG00000011385) #16	Il2 (ENSMSIG00000011366) #17	ENSMSIG00000011352	Adad1 (ENSMSIG00000011307) #18	Bltp1 (ENSMSIG00000010361) #19	Trpc3 (ENSMSIG00000010293) #20	Bbs7 (ENSMSIG00000010231) #21	Ccna2 (ENSMSIG00000010165) #22	Exosc9 (ENSMSIG00000010121) #23	Smim43 (ENSMSIG00000010117)	1810062G17Rik (ENSMSIG00000010099) #24	Anxa5 (ENSMSIG00000010071) #25
Mouse	MODERN SPECIES	12	Fat4 (ENSMUSG00000046743) #8	Ankrd50 (ENSMUSG00000044864) #9	Gm5148 (ENSMUSG00000058174)	Spry1 (ENSMUSG00000037211) #10	Spata5 (ENSMUSG00000027722) #11	Nudt6 (ENSMUSG00000050174) #12	Fgf2 (ENSMUSG00000037225) #13	Bbs12 (ENSMUSG00000051444) #14	Cetn4 (ENSMUSG00000045031) #15	Il21 (ENSMUSG00000027718) #16	Il2 (ENSMUSG00000027720) #17	Adad1 (ENSMUSG00000027719) #18	Bltp1 (ENSMUSG00000037270) #19	Trpc3 (ENSMUSG00000027716) #20	Bbs7 (ENSMUSG00000037325) #21	Ccna2 (ENSMUSG00000027715) #22	Exosc9 (ENSMUSG00000027714) #23	Smim43 (ENSMUSG00000085007)	1810062G17Rik (ENSMUSG00000027713) #24	Anxa5 (ENSMUSG00000027712) #25	Qrfpr (ENSMUSG00000058400) #26	Zfp267 (ENSMUSG00000033883) #27	Acad9 (ENSMUSG00000027710) #28	Ccdc144b (ENSMUSG00000047696) #29	Mccc1 (ENSMUSG00000027709) #30	Dcun1d1 (ENSMUSG00000027708) #31	Atp11b (ENSMUSG00000037400) #32	Sox2 (ENSMUSG00000074637) #33	Dnajc19 (ENSMUSG00000027679) #34	Fxr1 (ENSMUSG00000027680) #35	Ccdc39 (ENSMUSG00000027676) #36