Murinae	ANCESTRAL SPECIES	5	ENSGT00390000001301	ENSGT00940000155719.b #7	ENSGT00940000155116.b #8	ENSGT00950000183055.b.a #10	ENSGT00940000157323 #11	ENSGT00390000008458 #12	ENSGT00940000161583 #13	ENSGT00390000008984 #14	ENSGT00940000162309 #15	ENSGT00390000010494 #16	ENSGT00390000003555 #17	ENSGT00940000156842 #18	ENSGT00640000091487 #19	ENSGT01060000248588.a.c.b #20	ENSGT00390000012346 #21	ENSGT00940000155372 #22	ENSGT00950000183130.A #23	ENSGT01010000222815 #24	ENSGT00940000155988 #26	ENSGT00950000183169.C #28	ENSGT00940000157312 #29	ENSGT00940000153661.a.a ##30	ENSGT00940000156941 #31	ENSGT00940000154552.b #32	ENSGT00940000156162.C.k #33	ENSGT00940000160614 #34	ENSGT00940000154384.h.b.f #35	ENSGT00950000183189.a.b.a #36	ENSGT00390000015010 #37	ENSGT00390000013701	ENSGT00940000155931
Mus	ANCESTRAL SPECIES	7	ENSGT00390000001301	ENSGT00940000155719.b #7	ENSGT00940000155116.b #8	ENSGT00950000183055.b.a #10	ENSGT00940000157323 #11	ENSGT00390000008458 #12	ENSGT00940000161583 #13	ENSGT00390000008984 #14	ENSGT00940000162309 #15	ENSGT00390000010494 #16	ENSGT00390000003555 #17	ENSGT00940000156842 #18	ENSGT00640000091487 #19	ENSGT01060000248588.a.c.b #20	ENSGT00390000012346 #21	ENSGT00940000155372 #22	ENSGT00950000183130.A #23	ENSGT01010000222815 #24	ENSGT00860000136163 #25	ENSGT00940000155988 #26	ENSGT00950000183169.C #28	ENSGT00940000157312 #29	ENSGT00940000153661.a.a ##30	ENSGT00940000156941 #31	ENSGT00940000154552.b #32	ENSGT00940000156162.C.k #33	ENSGT00940000160614 #34	ENSGT00940000154384.h.b.f #35	ENSGT00950000183189.a.b.a #36	ENSGT00390000015010 #37	ENSGT00390000013701
Mus_A	ANCESTRAL SPECIES	9	ENSGT00390000001301	ENSGT00940000155719.b #7	ENSGT00940000155116.b #8	ENSGT00950000183055.b.a #10	ENSGT00940000157323 #11	ENSGT00390000008458 #12	ENSGT00940000161583 #13	ENSGT00390000008984 #14	ENSGT00940000162309 #15	ENSGT00390000010494 #16	ENSGT00390000003555 #17	ENSGT00940000156842 #18	ENSGT00640000091487 #19	ENSGT01060000248588.a.c.b #20	ENSGT00390000012346 #21	ENSGT00940000155372 #22	ENSGT00950000183130.A #23	ENSGT01010000222815 #24	ENSGT00860000136163 #25	ENSGT00940000155988 #26	ENSGT00950000183169.C #28	ENSGT00940000157312 #29	ENSGT00940000153661.a.a ##30	ENSGT00940000153661.b.b #30	ENSGT00940000156941 #31	ENSGT00940000154552.b #32	ENSGT00940000156162.C.k #33	ENSGT00940000160614 #34	ENSGT00940000154384.h.b.f #35	ENSGT00950000183189.a.b.a #36	ENSGT00390000015010 #37
Mus_B	ANCESTRAL SPECIES	8	ENSGT00390000001301	ENSGT00940000155719.b #7	ENSGT00940000155116.b #8	ENSGT00950000183055.b.a #10	ENSGT00940000157323 #11	ENSGT00390000008458 #12	ENSGT00940000161583 #13	ENSGT00390000008984 #14	ENSGT00940000162309 #15	ENSGT00390000010494 #16	ENSGT00390000003555 #17	ENSGT00940000156842 #18	ENSGT00640000091487 #19	ENSGT01060000248588.a.c.b #20	ENSGT00390000012346 #21	ENSGT00940000155372 #22	ENSGT00950000183130.A #23	ENSGT01010000222815 #24	ENSGT00860000136163 #25	ENSGT00940000155988 #26	ENSGT00950000183169.C #28	ENSGT00940000157312 #29	ENSGT00940000153661.a.a ##30	ENSGT00940000156941 #31	ENSGT00940000154552.b #32	ENSGT00940000156162.C.k #33	ENSGT00940000160614 #34	ENSGT00940000154384.h.b.f #35	ENSGT00950000183189.a.b.a #36	ENSGT00390000015010 #37	ENSGT00390000013701
Mouse	MODERN SPECIES	12	Fat4 (ENSMUSG00000046743) #7	Ankrd50 (ENSMUSG00000044864) #8	Gm5148 (ENSMUSG00000058174) #9	Spry1 (ENSMUSG00000037211) #10	Spata5 (ENSMUSG00000027722) #11	Nudt6 (ENSMUSG00000050174) #12	Fgf2 (ENSMUSG00000037225) #13	Bbs12 (ENSMUSG00000051444) #14	Cetn4 (ENSMUSG00000045031) #15	Il21 (ENSMUSG00000027718) #16	Il2 (ENSMUSG00000027720) #17	Adad1 (ENSMUSG00000027719) #18	Bltp1 (ENSMUSG00000037270) #19	Trpc3 (ENSMUSG00000027716) #20	Bbs7 (ENSMUSG00000037325) #21	Ccna2 (ENSMUSG00000027715) #22	Exosc9 (ENSMUSG00000027714) #23	Smim43 (ENSMUSG00000085007) #24	1810062G17Rik (ENSMUSG00000027713) #25	Anxa5 (ENSMUSG00000027712) #26	Qrfpr (ENSMUSG00000058400) #27	Zfp267 (ENSMUSG00000033883) #28	Acad9 (ENSMUSG00000027710) #29	Ccdc144b (ENSMUSG00000047696) #30	Mccc1 (ENSMUSG00000027709) #31	Dcun1d1 (ENSMUSG00000027708) #32	Atp11b (ENSMUSG00000037400) #33	Sox2 (ENSMUSG00000074637) #34	Dnajc19 (ENSMUSG00000027679) #35	Fxr1 (ENSMUSG00000027680) #36	Ccdc39 (ENSMUSG00000027676) #37
Mus_C	ANCESTRAL SPECIES	6	ENSGT00940000160648	ENSGT00390000001301	ENSGT00940000155116.b #8	ENSGT00950000183055.b.a #10	ENSGT00940000157323 #11	ENSGT00390000008458 #12	ENSGT00940000161583 #13	ENSGT00390000008984 #14	ENSGT00940000162309 #15	ENSGT00390000010494 #16	ENSGT00390000003555 #17	ENSGT00940000156842 #18	ENSGT00640000091487 #19	ENSGT01060000248588.a.c.b #20	ENSGT00390000012346 #21	ENSGT00940000155372 #22	ENSGT00950000183130.A #23	ENSGT01010000222815 #24	ENSGT00860000136163 #25	ENSGT00940000155988 #26	ENSGT00950000183169.C #28	ENSGT00940000157312 #29	ENSGT00940000153661.a.a ##30	ENSGT00940000156941 #31	ENSGT00940000154552.b #32	ENSGT00940000156162.C.k #33	ENSGT00940000160614 #34	ENSGT00940000154384.h.b.f #35	ENSGT00950000183189.a.b.a #36	ENSGT00390000015010 #37	ENSGT00390000013701
spretus	MODERN SPECIES	12	Intu (MGP_SPRETEiJ_G0025890)	Fat4 (MGP_SPRETEiJ_G0025889) #7	Ankrd50 (MGP_SPRETEiJ_G0025888) #8	Spry1 (MGP_SPRETEiJ_G0025886) #10	Spata5 (MGP_SPRETEiJ_G0025885) #11	Nudt6 (MGP_SPRETEiJ_G0025884) #12	Fgf2 (MGP_SPRETEiJ_G0025883) #13	Bbs12 (MGP_SPRETEiJ_G0025882) #14	Cetn4 (MGP_SPRETEiJ_G0025881) #15	Il21 (MGP_SPRETEiJ_G0025880) #16	Il2 (MGP_SPRETEiJ_G0025879) #17	MGP_SPRETEiJ_G0025878 #18	MGP_SPRETEiJ_G0025877 #19	Trpc3 (MGP_SPRETEiJ_G0025876) #20	Bbs7 (MGP_SPRETEiJ_G0025875) #21	Ccna2 (MGP_SPRETEiJ_G0025874) #22	Exosc9 (MGP_SPRETEiJ_G0025873) #23	MGP_SPRETEiJ_G0025872 #25	Anxa5 (MGP_SPRETEiJ_G0025871) #26	Qrfpr (MGP_SPRETEiJ_G0025870) #27	Zfp267 (MGP_SPRETEiJ_G0025869) #28	Acad9 (MGP_SPRETEiJ_G0025868) #29	MGP_SPRETEiJ_G0025867 ##30	Mccc1 (MGP_SPRETEiJ_G0025866) #31	MGP_SPRETEiJ_G0025865 #32	Atp11b (MGP_SPRETEiJ_G0025864) #33	Sox2 (MGP_SPRETEiJ_G0025863) #34	Dnajc19 (MGP_SPRETEiJ_G0025862) #35	Fxr1 (MGP_SPRETEiJ_G0025861) #36	Ccdc39 (MGP_SPRETEiJ_G0025860) #37	Ttc14 (MGP_SPRETEiJ_G0025859)
Steppe mouse	MODERN SPECIES	2979		Spry1 (ENSMSIG00000011699) #10	Spata5 (ENSMSIG00000011608) #11	Nudt6 (ENSMSIG00000011537) #12	Fgf2 (ENSMSIG00000011514) #13	ENSMSIG00000011508	Bbs12 (ENSMSIG00000011504) #14	ENSMSIG00000011420 #15	Il21 (ENSMSIG00000011385) #16	Il2 (ENSMSIG00000011366) #17	ENSMSIG00000011352	Adad1 (ENSMSIG00000011307) #18	Bltp1 (ENSMSIG00000010361) #19	Trpc3 (ENSMSIG00000010293) #20	Bbs7 (ENSMSIG00000010231) #21	Ccna2 (ENSMSIG00000010165) #22	Exosc9 (ENSMSIG00000010121) #23	Smim43 (ENSMSIG00000010117) #24	1810062G17Rik (ENSMSIG00000010099) #25	Anxa5 (ENSMSIG00000010071) #26
Ryukyu mouse	MODERN SPECIES	12	Intu (MGP_CAROLIEiJ_G0024956)	Fat4 (MGP_CAROLIEiJ_G0024955) #7	Ankrd50 (MGP_CAROLIEiJ_G0024954) #8	Spry1 (MGP_CAROLIEiJ_G0024952) #10	Spata5 (MGP_CAROLIEiJ_G0024951) #11	Nudt6 (MGP_CAROLIEiJ_G0024950) #12	Fgf2 (MGP_CAROLIEiJ_G0024949) #13	Bbs12 (MGP_CAROLIEiJ_G0024948) #14	Cetn4 (MGP_CAROLIEiJ_G0024947) #15	Il21 (MGP_CAROLIEiJ_G0024946) #16	Il2 (MGP_CAROLIEiJ_G0024945) #17	Adad1 (MGP_CAROLIEiJ_G0024944) #18	Bltp1 (MGP_CAROLIEiJ_G0024943) #19	Trpc3 (MGP_CAROLIEiJ_G0024942) #20	Bbs7 (MGP_CAROLIEiJ_G0024941) #21	Ccna2 (MGP_CAROLIEiJ_G0024940) #22	Exosc9 (MGP_CAROLIEiJ_G0024939) #23	MGP_CAROLIEiJ_G0024938 #25	Anxa5 (MGP_CAROLIEiJ_G0024937) #26	Qrfpr (MGP_CAROLIEiJ_G0024936) #27	Zfp267 (MGP_CAROLIEiJ_G0024935) #28	MGP_CAROLIEiJ_G0024934 #29	MGP_CAROLIEiJ_G0024933 #30	Mccc1 (MGP_CAROLIEiJ_G0024932) #31	MGP_CAROLIEiJ_G0024931 #32	Atp11b (MGP_CAROLIEiJ_G0024930) #33	Sox2 (MGP_CAROLIEiJ_G0024929) #34	MGP_CAROLIEiJ_G0024928 #35	Fxr1 (MGP_CAROLIEiJ_G0024927) #36	Ccdc39 (MGP_CAROLIEiJ_G0024926) #37	Ttc14 (MGP_CAROLIEiJ_G0024925)
Shrew mouse	MODERN SPECIES	17	Intu (MGP_PahariEiJ_G0026396)	Fat4 (MGP_PahariEiJ_G0026395) #7	Ankrd50 (MGP_PahariEiJ_G0026394) #8	Spry1 (MGP_PahariEiJ_G0026392) #10	Spata5 (MGP_PahariEiJ_G0026391) #11	Nudt6 (MGP_PahariEiJ_G0026390) #12	Fgf2 (MGP_PahariEiJ_G0026389) #13	Bbs12 (MGP_PahariEiJ_G0026388) #14	Cetn4 (MGP_PahariEiJ_G0026387) #15	Il21 (MGP_PahariEiJ_G0026386) #16	Il2 (MGP_PahariEiJ_G0026385) #17	Adad1 (MGP_PahariEiJ_G0026384) #18	Bltp1 (MGP_PahariEiJ_G0026383) #19	Trpc3 (MGP_PahariEiJ_G0026382) #20	Bbs7 (MGP_PahariEiJ_G0026381) #21	Ccna2 (MGP_PahariEiJ_G0026380) #22	Exosc9 (MGP_PahariEiJ_G0026379) #23	MGP_PahariEiJ_G0026378 #25	Anxa5 (MGP_PahariEiJ_G0026377) #26	Qrfpr (MGP_PahariEiJ_G0026376) #27	Zfp267 (MGP_PahariEiJ_G0026375) #28	MGP_PahariEiJ_G0026374 #32	Sox2 (MGP_PahariEiJ_G0026373) #34	Dnajc19 (MGP_PahariEiJ_G0026372) #35	Fxr1 (MGP_PahariEiJ_G0026371) #36	MGP_PahariEiJ_G0026370	Pex5l (MGP_PahariEiJ_G0026369)	Usp13 (MGP_PahariEiJ_G0026368)	Ndufb5 (MGP_PahariEiJ_G0026367)	Mrpl47 (MGP_PahariEiJ_G0026366)	Actl6a (MGP_PahariEiJ_G0026365)
Rat	MODERN SPECIES	11	Fat4 (ENSRNOG00000028335) #7	Ankrd50 (ENSRNOG00000010534) #8	ENSRNOG00000067850	Spry1 (ENSRNOG00000025371) #10	Spata5 (ENSRNOG00000017462) #11	Nudt6 (ENSRNOG00000017420) #12	Fgf2 (ENSRNOG00000017392) #13	Bbs12 (ENSRNOG00000068263) #14	Cetn4 (ENSRNOG00000026162) #15	Il21 (ENSRNOG00000017376) #16	Il2 (ENSRNOG00000017348) #17	Adad1 (ENSRNOG00000017246) #18	Bltp1 (ENSRNOG00000038436) #19	Trpc3 (ENSRNOG00000016070) #20	Bbs7 (ENSRNOG00000015816) #21	Ccna2 (ENSRNOG00000015423) #22	Exosc9 (ENSRNOG00000014674) #23	Smim43 (ENSRNOG00000070831) #24	Anxa5 (ENSRNOG00000014453) #26	Qrfpr (ENSRNOG00000014414) #27	Arsl (ENSRNOG00000028350)	ENSRNOG00000066024	Zfp267 (ENSRNOG00000042283) #28	Acad9 (ENSRNOG00000014178) #29	ENSRNOG00000065565	Ccdc144b (ENSRNOG00000056177) ##30	Mccc1 (ENSRNOG00000013293) #31	Dcun1d1 (ENSRNOG00000012734) #32	Atp11b (ENSRNOG00000052116) #33	Sox2 (ENSRNOG00000012199) #34	Dnajc19 (ENSRNOG00000049819) #35