Rodentia_A	ANCESTRAL SPECIES	24	ENSGT00390000001301	ENSGT00940000155719.b	ENSGT00940000155116.b	ENSGT00950000183055.b.a #10	ENSGT00940000157323 #11	ENSGT00390000008458 #12	ENSGT00940000161583 #13	ENSGT00390000008984 #14	ENSGT00940000162309 #15	ENSGT00390000010494 #16	ENSGT00390000003555 #17	ENSGT00940000156842 #18	ENSGT00640000091487 #19	ENSGT01060000248588.a.c.b #20	ENSGT00390000012346 #21	ENSGT00940000155372 #22	ENSGT00950000183130.A #23	ENSGT01010000222815	ENSGT00940000155988 #24	ENSGT01070000253744.a.b	ENSGT00510000046908.a.a.b	ENSGT00390000007586.a.b	ENSGT00940000158340	ENSGT00940000153395.a	ENSGT00940000155475	ENSGT00800000124172	ENSGT00530000064570	ENSGT00940000156337	ENSGT00950000183027.b	ENSGT00950000183054.a.a.a	ENSGT00950000182924.A.b.a.b
Hystricomorpha	ANCESTRAL SPECIES	38	ENSGT00390000001301	ENSGT00940000155719.b	ENSGT00940000155116.b	ENSGT00950000183055.b.a #10	ENSGT00940000157323 #11	ENSGT00390000008458 #12	ENSGT00940000161583 #13	ENSGT00390000008984 #14	ENSGT00940000162309 #15	ENSGT00390000010494 #16	ENSGT00390000003555 #17	ENSGT00940000156842 #18	ENSGT00640000091487 #19	ENSGT01060000248588.a.c.b #20	ENSGT00390000012346 #21	ENSGT00940000155372 #22	ENSGT00950000183130.A #23	ENSGT01010000222815	ENSGT00940000155988 #24	ENSGT01070000253744.a.b	ENSGT00510000046908.a.a.b	ENSGT00390000007586.a.b	ENSGT00940000158340	ENSGT00940000153395.a	ENSGT00940000155475	ENSGT00800000124172	ENSGT00530000064570	ENSGT00940000156337	ENSGT00950000183027.b	ENSGT00950000183054.a.a.a	ENSGT00950000182924.A.b.a.b
Hystricomorpha_a	ANCESTRAL SPECIES	34	ENSGT00390000001301	ENSGT00940000155719.b	ENSGT00940000155116.b	ENSGT00950000183055.b.a #10	ENSGT00940000157323 #11	ENSGT00390000008458 #12	ENSGT00940000161583 #13	ENSGT00390000008984 #14	ENSGT00940000162309 #15	ENSGT00390000010494 #16	ENSGT00390000003555 #17	ENSGT00940000156842 #18	ENSGT00640000091487 #19	ENSGT01060000248588.a.c.b #20	ENSGT00390000012346 #21	ENSGT00940000155372 #22	ENSGT00950000183130.A #23	ENSGT00940000155988 #24	ENSGT01070000253744.a.b	ENSGT00510000046908.a.a.b	ENSGT00390000007586.a.b	ENSGT00940000158340	ENSGT00940000153395.a	ENSGT00940000155475	ENSGT00800000124172	ENSGT00530000064570	ENSGT00940000156337	ENSGT00950000183027.b	ENSGT00950000183054.a.a.a	ENSGT00950000182924.A.b.a.b	ENSGT00550000075003
Hystricomorpha_b	ANCESTRAL SPECIES	75	ENSGT00390000001301	ENSGT00940000155719.b	ENSGT00940000155116.b	ENSGT00950000183055.b.a #10	ENSGT00940000157323 #11	ENSGT00390000008458 #12	ENSGT00940000161583 #13	ENSGT00390000008984 #14	ENSGT00940000162309 #15	ENSGT00390000010494 #16	ENSGT00390000003555 #17	ENSGT00940000156842 #18	ENSGT00640000091487 #19	ENSGT01060000248588.a.c.b #20	ENSGT00390000012346 #21	ENSGT00940000155372 #22	ENSGT00950000183130.A #23	ENSGT00940000155988 #24	ENSGT01070000253744.a.b	ENSGT00510000046908.a.a.b	ENSGT00390000007586.a.b	ENSGT00940000158340	ENSGT00940000153395.a	ENSGT00940000155475	ENSGT00800000124172	ENSGT00530000064570	ENSGT00940000156337	ENSGT00950000183027.b	ENSGT00950000183054.a.a.a	ENSGT00950000182924.A.b.a.b	ENSGT00550000075003
Degu	MODERN SPECIES	297				SPRY1 (ENSODEG00000000325) #10	SPATA5 (ENSODEG00000000401) #11	NUDT6 (ENSODEG00000000982) #12	FGF2 (ENSODEG00000001008) #13	BBS12 (ENSODEG00000001051) #14	ENSODEG00000001131 #15	IL21 (ENSODEG00000001146) #16	IL2 (ENSODEG00000001158) #17	ADAD1 (ENSODEG00000001197) #18	BLTP1 (ENSODEG00000001505) #19	TRPC3 (ENSODEG00000001237) #20	BBS7 (ENSODEG00000001786) #21	CCNA2 (ENSODEG00000002082) #22	EXOSC9 (ENSODEG00000000589) #23	ANXA5 (ENSODEG00000000798) #24
Long-tailed chinchilla	MODERN SPECIES	135	INTU (ENSCLAG00000004954)	FAT4 (ENSCLAG00000006183)	ANKRD50 (ENSCLAG00000003314)	SPRY1 (ENSCLAG00000003787) #10	SPATA5 (ENSCLAG00000005265) #11	NUDT6 (ENSCLAG00000006306) #12	FGF2 (ENSCLAG00000003340) #13	ENSCLAG00000008111 #15	BBS12 (ENSCLAG00000017705) #14	IL21 (ENSCLAG00000009098) #16	IL2 (ENSCLAG00000009317) #17	ADAD1 (ENSCLAG00000004688) #18	BLTP1 (ENSCLAG00000007818) #19	TRPC3 (ENSCLAG00000003574) #20	BBS7 (ENSCLAG00000004340) #21	CCNA2 (ENSCLAG00000003880) #22	EXOSC9 (ENSCLAG00000004644) #23	ANXA5 (ENSCLAG00000004278) #24	ENSCLAG00000005382	QRFPR (ENSCLAG00000006789)	TNIP3 (ENSCLAG00000004304)	NDNF (ENSCLAG00000004819)	PRDM5 (ENSCLAG00000005392)	ENSCLAG00000003295	MAD2L1 (ENSCLAG00000003756)	PDE5A (ENSCLAG00000004806)	FABP2 (ENSCLAG00000004293)	C4orf3 (ENSCLAG00000005064)	USP53 (ENSCLAG00000005403)	MYOZ2 (ENSCLAG00000003567)	SYNPO2 (ENSCLAG00000004412)
Guinea pig	MODERN SPECIES	7	INTU (ENSCPOG00000001974)	FAT4 (ENSCPOG00000003631)	ANKRD50 (ENSCPOG00000012841)	SPRY1 (ENSCPOG00000035769) #10	SPATA5 (ENSCPOG00000005397) #11	ENSCPOG00000030140 #12	FGF2 (ENSCPOG00000005386) #13	BBS12 (ENSCPOG00000005539) #14	ENSCPOG00000021793 #15	IL21 (ENSCPOG00000012431) #16	IL2 (ENSCPOG00000008265) #17	ADAD1 (ENSCPOG00000014455) #18	BLTP1 (ENSCPOG00000010581) #19	TRPC3 (ENSCPOG00000001231) #20	BBS7 (ENSCPOG00000001229) #21	CCNA2 (ENSCPOG00000010373) #22	EXOSC9 (ENSCPOG00000034344) #23	ANXA5 (ENSCPOG00000038586) #24	QRFPR (ENSCPOG00000001530)	TNIP3 (ENSCPOG00000003813)	NDNF (ENSCPOG00000009703)	PRDM5 (ENSCPOG00000012883)	MAD2L1 (ENSCPOG00000030145)	PDE5A (ENSCPOG00000008756)	FABP2 (ENSCPOG00000008750)	C4orf3 (ENSCPOG00000021561)	ENSCPOG00000001323	MYOZ2 (ENSCPOG00000007291)	SYNPO2 (ENSCPOG00000020548)	SEC24D (ENSCPOG00000004621)	METTL14 (ENSCPOG00000037880)
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	14	ENSHGLG00000038666	OR9I1 (ENSHGLG00000038340)	ENSHGLG00000035281	OR9Q2 (ENSHGLG00000019956)	ENSHGLG00000020138	ENSHGLG00000044886	ENSHGLG00000033600	ENSHGLG00000036719	ENSHGLG00000020231	OR5B17 (ENSHGLG00000045759)	ENSHGLG00000049454	ENSHGLG00000042677	ENSHGLG00000037266	ENSHGLG00000046469	ENSHGLG00000037157	ENSHGLG00000046158 #22	ENSHGLG00000050170	ENSHGLG00000046303	ENSHGLG00000043701	OR5B2 (ENSHGLG00000038754)	LPXN (ENSHGLG00000005443)	ENSHGLG00000004685	CNTF (ENSHGLG00000037191)	ENSHGLG00000044293	ENSHGLG00000034597	ENSHGLG00000034438	ENSHGLG00000003602	ENSHGLG00000050943	ENSHGLG00000034936	GLYAT (ENSHGLG00000007196)	ENSHGLG00000048064
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	22	ENSHGLG00000044181	ENSHGLG00000035137	ENSHGLG00000039446	ENSHGLG00000018796	ENSHGLG00000002030 #16	ENSHGLG00000041196 #14	SPATA5 (ENSHGLG00000002665) #11	NUDT6 (ENSHGLG00000040807) #12	ENSHGLG00000032095 #10	ANKRD50 (ENSHGLG00000010124)	ENSHGLG00000010627	ENSHGLG00000047556	ENSHGLG00000003394 #19	ENSHGLG00000003167 #20	BBS7 (ENSHGLG00000002879) #21	ENSHGLG00000002599 #22	EXOSC9 (ENSHGLG00000002467) #23	SMIM43 (ENSHGLG00000036790)	ENSHGLG00000035708 #24	ENSHGLG00000038676	ENSHGLG00000002280	ENSHGLG00000004934	ENSHGLG00000033298	TNIP3 (ENSHGLG00000003668)	NDNF (ENSHGLG00000003417)	PRDM5 (ENSHGLG00000003010)	ENSHGLG00000040170	ENSHGLG00000004064	ENSHGLG00000047434	ENSHGLG00000000181	ENSHGLG00000049304
Naked mole-rat female	MODERN SPECIES	24	ENSHGLG00000002410	ANKRD42 (ENSHGLG00000007952)	ENSHGLG00000014010	ENSHGLG00000043756	ENSHGLG00000046380	ENSHGLG00000042096	DLG2 (ENSHGLG00000004449)	ENSHGLG00000037235	ENSHGLG00000003500	ENSHGLG00000003233	CREBZF (ENSHGLG00000003083)	CCDC89 (ENSHGLG00000037872)	ENSHGLG00000002340	CCDC83 (ENSHGLG00000036065)	PICALM (ENSHGLG00000001052)	ENSHGLG00000001667 #22	EED (ENSHGLG00000001511)	ENSHGLG00000041908	CCDC81 (ENSHGLG00000001095)	ENSHGLG00000038302	ENSHGLG00000001103	ME3 (ENSHGLG00000001044)	ENSHGLG00000000902	PRSS23 (ENSHGLG00000047569)	FZD4 (ENSHGLG00000000698)	ENSHGLG00000032437	ENSHGLG00000043753	TMEM135 (ENSHGLG00000001739)	ENSHGLG00000045425	ENSHGLG00000034306	RAB38 (ENSHGLG00000041890)
Sciuridae	ANCESTRAL SPECIES	38	ENSGT00390000001301	ENSGT00940000155719.b	ENSGT00940000155116.b	ENSGT00950000183055.b.a #10	ENSGT00940000157323 #11	ENSGT00390000008458 #12	ENSGT00940000161583 #13	ENSGT00390000008984 #14	ENSGT00940000162309 #15	ENSGT00390000010494 #16	ENSGT00390000003555 #17	ENSGT00940000156842 #18	ENSGT00640000091487 #19	ENSGT01060000248588.a.c.b #20	ENSGT00390000012346 #21	ENSGT00940000155372 #22	ENSGT00950000183130.A #23	ENSGT01010000222815	ENSGT00940000155988 #24	ENSGT01070000253744.a.b	ENSGT00510000046908.a.a.b	ENSGT00390000007586.a.b	ENSGT00940000158340	ENSGT00940000153395.a	ENSGT00940000155475	ENSGT00800000124172	ENSGT00940000156337	ENSGT00950000183027.b	ENSGT00950000183054.a.a.a	ENSGT01060000248649.a	ENSGT00950000182924.A.b.a.b
Marmotini	ANCESTRAL SPECIES	45	ENSGT00390000001301	ENSGT00940000155719.b	ENSGT00940000155116.b	ENSGT00950000183055.b.a #10	ENSGT00940000157323 #11	ENSGT00390000008458 #12	ENSGT00940000161583 #13	ENSGT00390000008984 #14	ENSGT00940000162309 #15	ENSGT00390000010494 #16	ENSGT00390000003555 #17	ENSGT00940000156842 #18	ENSGT00640000091487 #19	ENSGT01060000248588.a.c.b #20	ENSGT00390000012346 #21	ENSGT00940000155372 #22	ENSGT00950000183130.A #23	ENSGT01010000222815	ENSGT00940000155988 #24	ENSGT01070000253744.a.b	ENSGT00510000046908.a.a.b	ENSGT00390000007586.a.b	ENSGT00940000158340	ENSGT00940000153395.a
Marmotini_b	ANCESTRAL SPECIES	148	ENSGT00390000001301	ENSGT00940000155719.b	ENSGT00940000155116.b	ENSGT00950000183055.b.a #10	ENSGT00940000157323 #11	ENSGT00390000008458 #12	ENSGT00940000161583 #13	ENSGT00390000008984 #14	ENSGT00940000162309 #15	ENSGT00390000010494 #16	ENSGT00390000003555 #17	ENSGT00940000156842 #18	ENSGT00640000091487 #19	ENSGT01060000248588.a.c.b #20	ENSGT00390000012346 #21	ENSGT00940000155372 #22	ENSGT00950000183130.A #23	ENSGT01010000222815	ENSGT00940000155988 #24	ENSGT01070000253744.a.b	ENSGT00510000046908.a.a.b	ENSGT00390000007586.a.b	ENSGT00940000158340	ENSGT00940000153395.a
Squirrel	MODERN SPECIES	262		FAT4 (ENSSTOG00000010020)	ANKRD50 (ENSSTOG00000020609)	SPRY1 (ENSSTOG00000019856) #10	SPATA5 (ENSSTOG00000016252) #11	NUDT6 (ENSSTOG00000020437) #12	FGF2 (ENSSTOG00000028359) #13	BBS12 (ENSSTOG00000010337) #14	ENSSTOG00000024309 #15	IL21 (ENSSTOG00000012108) #16	IL2 (ENSSTOG00000016100) #17	ADAD1 (ENSSTOG00000027523) #18	BLTP1 (ENSSTOG00000016095) #19	TRPC3 (ENSSTOG00000014731) #20	BBS7 (ENSSTOG00000026947) #21	CCNA2 (ENSSTOG00000008011) #22	EXOSC9 (ENSSTOG00000007984) #23	ANXA5 (ENSSTOG00000015236) #24	QRFPR (ENSSTOG00000011128)	ENSSTOG00000002218	NDNF (ENSSTOG00000026308)	PRDM5 (ENSSTOG00000004741)	MAD2L1 (ENSSTOG00000025410)
Arctic ground squirrel	MODERN SPECIES	504														TRPC3 (ENSUPAG00010003020) #20	BBS7 (ENSUPAG00010003036) #21	CCNA2 (ENSUPAG00010003078) #22	EXOSC9 (ENSUPAG00010003098) #23	SMIM43 (ENSUPAG00010003133)	ANXA5 (ENSUPAG00010003144) #24	QRFPR (ENSUPAG00010003178)	ENSUPAG00010003212	NDNF (ENSUPAG00010003281)	PRDM5 (ENSUPAG00010003287)	MAD2L1 (ENSUPAG00010003371)
Alpin marmot	MODERN SPECIES	5	FAT4 (ENSMMMG00000014294)	ANKRD50 (ENSMMMG00000014280)	SPRY1 (ENSMMMG00000014257) #10	SPATA5 (ENSMMMG00000014189) #11	ENSMMMG00000014177 #12	FGF2 (ENSMMMG00000014167) #13	BBS12 (ENSMMMG00000014165) #14	ENSMMMG00000014128 #15	ENSMMMG00000014115	IL21 (ENSMMMG00000014088) #16	IL2 (ENSMMMG00000014074) #17	ADAD1 (ENSMMMG00000014047) #18	BLTP1 (ENSMMMG00000013870) #19	TRPC3 (ENSMMMG00000013843) #20	BBS7 (ENSMMMG00000013792) #21	CCNA2 (ENSMMMG00000013774) #22	EXOSC9 (ENSMMMG00000013752) #23	ANXA5 (ENSMMMG00000013732) #24	QRFPR (ENSMMMG00000013643)	ENSMMMG00000013612	NDNF (ENSMMMG00000013604)	PRDM5 (ENSMMMG00000013584)	MAD2L1 (ENSMMMG00000013561)
Eurasian red squirrel	MODERN SPECIES	18	FAT4 (ENSSVLG00005016900)	ANKRD50 (ENSSVLG00005016833)	SPRY1 (ENSSVLG00005016820) #10	SPATA5 (ENSSVLG00005016625) #11	NUDT6 (ENSSVLG00005016540) #12	FGF2 (ENSSVLG00005016503) #13	BBS12 (ENSSVLG00005016487) #14	ENSSVLG00005016460 #15	ENSSVLG00005016447	IL21 (ENSSVLG00005016343) #16	IL2 (ENSSVLG00005016296) #17	ENSSVLG00005016021 #18	BLTP1 (ENSSVLG00005015963) #19	TRPC3 (ENSSVLG00005015770) #20	BBS7 (ENSSVLG00005015419) #21	CCNA2 (ENSSVLG00005015372) #22	ENSSVLG00005015214 #23	SMIM43 (ENSSVLG00005015189)	ANXA5 (ENSSVLG00005014980) #24	ENSSVLG00005014925	QRFPR (ENSSVLG00005014858)	NDNF (ENSSVLG00005014362)	PRDM5 (ENSSVLG00005014293)	MAD2L1 (ENSSVLG00005014204)	ENSSVLG00005014083	PDE5A (ENSSVLG00005013841)	FABP2 (ENSSVLG00005013640)	USP53 (ENSSVLG00005013592)	MYOZ2 (ENSSVLG00005013483)	ENSSVLG00005013417	SEC24D (ENSSVLG00005013288)