Rodentia_A ANCESTRAL SPECIES 24 ENSGT00390000001301 ENSGT00940000155719.b ENSGT00940000155116.b ENSGT00950000183055.b.a ENSGT00940000157323 ENSGT00390000008458 ENSGT00940000161583 ENSGT00390000008984 ENSGT00940000162309 ENSGT00390000010494 ENSGT00390000003555 ENSGT00940000156842 ENSGT00640000091487 ENSGT01060000248588.a.c.b #20 ENSGT00390000012346 #21 ENSGT00940000155372 #22 ENSGT00950000183130.A #23 ENSGT01010000222815 #24 ENSGT00940000155988 #25 ENSGT01070000253744.a.b #26 ENSGT00510000046908.a.a.b #27 ENSGT00390000007586.a.b #28 ENSGT00940000158340 #29 ENSGT00940000153395.a #30 ENSGT00940000155475 ENSGT00800000124172 ENSGT00530000064570 ENSGT00940000156337 ENSGT00950000183027.b ENSGT00950000183054.a.a.a ENSGT00950000182924.A.b.a.b Sciuridae ANCESTRAL SPECIES 38 ENSGT00390000001301 ENSGT00940000155719.b ENSGT00940000155116.b ENSGT00950000183055.b.a ENSGT00940000157323 ENSGT00390000008458 ENSGT00940000161583 ENSGT00390000008984 ENSGT00940000162309 ENSGT00390000010494 ENSGT00390000003555 ENSGT00940000156842 ENSGT00640000091487 ENSGT01060000248588.a.c.b #20 ENSGT00390000012346 #21 ENSGT00940000155372 #22 ENSGT00950000183130.A #23 ENSGT01010000222815 #24 ENSGT00940000155988 #25 ENSGT01070000253744.a.b #26 ENSGT00510000046908.a.a.b #27 ENSGT00390000007586.a.b #28 ENSGT00940000158340 #29 ENSGT00940000153395.a #30 ENSGT00940000155475 ENSGT00800000124172 ENSGT00940000156337 ENSGT00950000183027.b ENSGT00950000183054.a.a.a ENSGT01060000248649.a ENSGT00950000182924.A.b.a.b Marmotini ANCESTRAL SPECIES 45 ENSGT00390000001301 ENSGT00940000155719.b ENSGT00940000155116.b ENSGT00950000183055.b.a ENSGT00940000157323 ENSGT00390000008458 ENSGT00940000161583 ENSGT00390000008984 ENSGT00940000162309 ENSGT00390000010494 ENSGT00390000003555 ENSGT00940000156842 ENSGT00640000091487 ENSGT01060000248588.a.c.b #20 ENSGT00390000012346 #21 ENSGT00940000155372 #22 ENSGT00950000183130.A #23 ENSGT01010000222815 #24 ENSGT00940000155988 #25 ENSGT01070000253744.a.b #26 ENSGT00510000046908.a.a.b #27 ENSGT00390000007586.a.b #28 ENSGT00940000158340 #29 ENSGT00940000153395.a #30 Marmotini_b ANCESTRAL SPECIES 148 ENSGT00390000001301 ENSGT00940000155719.b ENSGT00940000155116.b ENSGT00950000183055.b.a ENSGT00940000157323 ENSGT00390000008458 ENSGT00940000161583 ENSGT00390000008984 ENSGT00940000162309 ENSGT00390000010494 ENSGT00390000003555 ENSGT00940000156842 ENSGT00640000091487 ENSGT01060000248588.a.c.b #20 ENSGT00390000012346 #21 ENSGT00940000155372 #22 ENSGT00950000183130.A #23 ENSGT01010000222815 #24 ENSGT00940000155988 #25 ENSGT01070000253744.a.b #26 ENSGT00510000046908.a.a.b #27 ENSGT00390000007586.a.b #28 ENSGT00940000158340 #29 ENSGT00940000153395.a #30 Arctic ground squirrel MODERN SPECIES 504 TRPC3 (ENSUPAG00010003020) #20 BBS7 (ENSUPAG00010003036) #21 CCNA2 (ENSUPAG00010003078) #22 EXOSC9 (ENSUPAG00010003098) #23 SMIM43 (ENSUPAG00010003133) #24 ANXA5 (ENSUPAG00010003144) #25 QRFPR (ENSUPAG00010003178) #26 ENSUPAG00010003212 #27 NDNF (ENSUPAG00010003281) #28 PRDM5 (ENSUPAG00010003287) #29 MAD2L1 (ENSUPAG00010003371) #30 Squirrel MODERN SPECIES 262 FAT4 (ENSSTOG00000010020) ANKRD50 (ENSSTOG00000020609) SPRY1 (ENSSTOG00000019856) SPATA5 (ENSSTOG00000016252) NUDT6 (ENSSTOG00000020437) FGF2 (ENSSTOG00000028359) BBS12 (ENSSTOG00000010337) ENSSTOG00000024309 IL21 (ENSSTOG00000012108) IL2 (ENSSTOG00000016100) ADAD1 (ENSSTOG00000027523) BLTP1 (ENSSTOG00000016095) TRPC3 (ENSSTOG00000014731) #20 BBS7 (ENSSTOG00000026947) #21 CCNA2 (ENSSTOG00000008011) #22 EXOSC9 (ENSSTOG00000007984) #23 ANXA5 (ENSSTOG00000015236) #25 QRFPR (ENSSTOG00000011128) #26 ENSSTOG00000002218 #27 NDNF (ENSSTOG00000026308) #28 PRDM5 (ENSSTOG00000004741) #29 MAD2L1 (ENSSTOG00000025410) #30 Alpin marmot MODERN SPECIES 5 FAT4 (ENSMMMG00000014294) ANKRD50 (ENSMMMG00000014280) SPRY1 (ENSMMMG00000014257) SPATA5 (ENSMMMG00000014189) ENSMMMG00000014177 FGF2 (ENSMMMG00000014167) BBS12 (ENSMMMG00000014165) ENSMMMG00000014128 ENSMMMG00000014115 IL21 (ENSMMMG00000014088) IL2 (ENSMMMG00000014074) ADAD1 (ENSMMMG00000014047) BLTP1 (ENSMMMG00000013870) TRPC3 (ENSMMMG00000013843) #20 BBS7 (ENSMMMG00000013792) #21 CCNA2 (ENSMMMG00000013774) #22 EXOSC9 (ENSMMMG00000013752) #23 ANXA5 (ENSMMMG00000013732) #25 QRFPR (ENSMMMG00000013643) #26 ENSMMMG00000013612 #27 NDNF (ENSMMMG00000013604) #28 PRDM5 (ENSMMMG00000013584) #29 MAD2L1 (ENSMMMG00000013561) #30 Eurasian red squirrel MODERN SPECIES 18 FAT4 (ENSSVLG00005016900) ANKRD50 (ENSSVLG00005016833) SPRY1 (ENSSVLG00005016820) SPATA5 (ENSSVLG00005016625) NUDT6 (ENSSVLG00005016540) FGF2 (ENSSVLG00005016503) BBS12 (ENSSVLG00005016487) ENSSVLG00005016460 ENSSVLG00005016447 IL21 (ENSSVLG00005016343) IL2 (ENSSVLG00005016296) ENSSVLG00005016021 BLTP1 (ENSSVLG00005015963) TRPC3 (ENSSVLG00005015770) #20 BBS7 (ENSSVLG00005015419) #21 CCNA2 (ENSSVLG00005015372) #22 ENSSVLG00005015214 #23 SMIM43 (ENSSVLG00005015189) #24 ANXA5 (ENSSVLG00005014980) #25 ENSSVLG00005014925 QRFPR (ENSSVLG00005014858) #26 NDNF (ENSSVLG00005014362) #28 PRDM5 (ENSSVLG00005014293) #29 MAD2L1 (ENSSVLG00005014204) #30 ENSSVLG00005014083 PDE5A (ENSSVLG00005013841) FABP2 (ENSSVLG00005013640) USP53 (ENSSVLG00005013592) MYOZ2 (ENSSVLG00005013483) ENSSVLG00005013417 SEC24D (ENSSVLG00005013288) Hystricomorpha ANCESTRAL SPECIES 38 ENSGT00390000001301 ENSGT00940000155719.b ENSGT00940000155116.b ENSGT00950000183055.b.a ENSGT00940000157323 ENSGT00390000008458 ENSGT00940000161583 ENSGT00390000008984 ENSGT00940000162309 ENSGT00390000010494 ENSGT00390000003555 ENSGT00940000156842 ENSGT00640000091487 ENSGT01060000248588.a.c.b #20 ENSGT00390000012346 #21 ENSGT00940000155372 #22 ENSGT00950000183130.A #23 ENSGT01010000222815 #24 ENSGT00940000155988 #25 ENSGT01070000253744.a.b #26 ENSGT00510000046908.a.a.b #27 ENSGT00390000007586.a.b #28 ENSGT00940000158340 #29 ENSGT00940000153395.a #30 ENSGT00940000155475 ENSGT00800000124172 ENSGT00530000064570 ENSGT00940000156337 ENSGT00950000183027.b ENSGT00950000183054.a.a.a ENSGT00950000182924.A.b.a.b Hystricomorpha_a ANCESTRAL SPECIES 34 ENSGT00390000001301 ENSGT00940000155719.b ENSGT00940000155116.b ENSGT00950000183055.b.a ENSGT00940000157323 ENSGT00390000008458 ENSGT00940000161583 ENSGT00390000008984 ENSGT00940000162309 ENSGT00390000010494 ENSGT00390000003555 ENSGT00940000156842 ENSGT00640000091487 ENSGT01060000248588.a.c.b #20 ENSGT00390000012346 #21 ENSGT00940000155372 #22 ENSGT00950000183130.A #23 ENSGT00940000155988 #25 ENSGT01070000253744.a.b #26 ENSGT00510000046908.a.a.b #27 ENSGT00390000007586.a.b #28 ENSGT00940000158340 #29 ENSGT00940000153395.a #30 ENSGT00940000155475 ENSGT00800000124172 ENSGT00530000064570 ENSGT00940000156337 ENSGT00950000183027.b ENSGT00950000183054.a.a.a ENSGT00950000182924.A.b.a.b ENSGT00550000075003 Hystricomorpha_b ANCESTRAL SPECIES 75 ENSGT00390000001301 ENSGT00940000155719.b ENSGT00940000155116.b ENSGT00950000183055.b.a ENSGT00940000157323 ENSGT00390000008458 ENSGT00940000161583 ENSGT00390000008984 ENSGT00940000162309 ENSGT00390000010494 ENSGT00390000003555 ENSGT00940000156842 ENSGT00640000091487 ENSGT01060000248588.a.c.b #20 ENSGT00390000012346 #21 ENSGT00940000155372 #22 ENSGT00950000183130.A #23 ENSGT00940000155988 #25 ENSGT01070000253744.a.b #26 ENSGT00510000046908.a.a.b #27 ENSGT00390000007586.a.b #28 ENSGT00940000158340 #29 ENSGT00940000153395.a #30 ENSGT00940000155475 ENSGT00800000124172 ENSGT00530000064570 ENSGT00940000156337 ENSGT00950000183027.b ENSGT00950000183054.a.a.a ENSGT00950000182924.A.b.a.b ENSGT00550000075003 Long-tailed chinchilla MODERN SPECIES 135 INTU (ENSCLAG00000004954) FAT4 (ENSCLAG00000006183) ANKRD50 (ENSCLAG00000003314) SPRY1 (ENSCLAG00000003787) SPATA5 (ENSCLAG00000005265) NUDT6 (ENSCLAG00000006306) FGF2 (ENSCLAG00000003340) ENSCLAG00000008111 BBS12 (ENSCLAG00000017705) IL21 (ENSCLAG00000009098) IL2 (ENSCLAG00000009317) ADAD1 (ENSCLAG00000004688) BLTP1 (ENSCLAG00000007818) TRPC3 (ENSCLAG00000003574) #20 BBS7 (ENSCLAG00000004340) #21 CCNA2 (ENSCLAG00000003880) #22 EXOSC9 (ENSCLAG00000004644) #23 ANXA5 (ENSCLAG00000004278) #25 ENSCLAG00000005382 QRFPR (ENSCLAG00000006789) #26 TNIP3 (ENSCLAG00000004304) #27 NDNF (ENSCLAG00000004819) #28 PRDM5 (ENSCLAG00000005392) #29 ENSCLAG00000003295 MAD2L1 (ENSCLAG00000003756) #30 PDE5A (ENSCLAG00000004806) FABP2 (ENSCLAG00000004293) C4orf3 (ENSCLAG00000005064) USP53 (ENSCLAG00000005403) MYOZ2 (ENSCLAG00000003567) SYNPO2 (ENSCLAG00000004412) Degu MODERN SPECIES 297 SPRY1 (ENSODEG00000000325) SPATA5 (ENSODEG00000000401) NUDT6 (ENSODEG00000000982) FGF2 (ENSODEG00000001008) BBS12 (ENSODEG00000001051) ENSODEG00000001131 IL21 (ENSODEG00000001146) IL2 (ENSODEG00000001158) ADAD1 (ENSODEG00000001197) BLTP1 (ENSODEG00000001505) TRPC3 (ENSODEG00000001237) #20 BBS7 (ENSODEG00000001786) #21 CCNA2 (ENSODEG00000002082) #22 EXOSC9 (ENSODEG00000000589) #23 ANXA5 (ENSODEG00000000798) #25 Guinea pig MODERN SPECIES 7 INTU (ENSCPOG00000001974) FAT4 (ENSCPOG00000003631) ANKRD50 (ENSCPOG00000012841) SPRY1 (ENSCPOG00000035769) SPATA5 (ENSCPOG00000005397) ENSCPOG00000030140 FGF2 (ENSCPOG00000005386) BBS12 (ENSCPOG00000005539) ENSCPOG00000021793 IL21 (ENSCPOG00000012431) IL2 (ENSCPOG00000008265) ADAD1 (ENSCPOG00000014455) BLTP1 (ENSCPOG00000010581) TRPC3 (ENSCPOG00000001231) #20 BBS7 (ENSCPOG00000001229) #21 CCNA2 (ENSCPOG00000010373) #22 EXOSC9 (ENSCPOG00000034344) #23 ANXA5 (ENSCPOG00000038586) #25 QRFPR (ENSCPOG00000001530) #26 TNIP3 (ENSCPOG00000003813) #27 NDNF (ENSCPOG00000009703) #28 PRDM5 (ENSCPOG00000012883) #29 MAD2L1 (ENSCPOG00000030145) #30 PDE5A (ENSCPOG00000008756) FABP2 (ENSCPOG00000008750) C4orf3 (ENSCPOG00000021561) ENSCPOG00000001323 MYOZ2 (ENSCPOG00000007291) SYNPO2 (ENSCPOG00000020548) SEC24D (ENSCPOG00000004621) METTL14 (ENSCPOG00000037880) Naked mole-rat female DUPLICATION Naked mole-rat female MODERN SPECIES 14 ENSHGLG00000038666 OR9I1 (ENSHGLG00000038340) ENSHGLG00000035281 OR9Q2 (ENSHGLG00000019956) ENSHGLG00000020138 ENSHGLG00000044886 ENSHGLG00000033600 ENSHGLG00000036719 ENSHGLG00000020231 OR5B17 (ENSHGLG00000045759) ENSHGLG00000049454 ENSHGLG00000042677 ENSHGLG00000037266 ENSHGLG00000046469 ENSHGLG00000037157 ENSHGLG00000046158 #22 ENSHGLG00000050170 ENSHGLG00000046303 ENSHGLG00000043701 OR5B2 (ENSHGLG00000038754) LPXN (ENSHGLG00000005443) ENSHGLG00000004685 CNTF (ENSHGLG00000037191) ENSHGLG00000044293 ENSHGLG00000034597 ENSHGLG00000034438 ENSHGLG00000003602 ENSHGLG00000050943 ENSHGLG00000034936 GLYAT (ENSHGLG00000007196) ENSHGLG00000048064 Naked mole-rat female DUPLICATION Naked mole-rat female MODERN SPECIES 22 ENSHGLG00000044181 ENSHGLG00000035137 ENSHGLG00000039446 ENSHGLG00000018796 ENSHGLG00000002030 ENSHGLG00000041196 SPATA5 (ENSHGLG00000002665) NUDT6 (ENSHGLG00000040807) ENSHGLG00000032095 ANKRD50 (ENSHGLG00000010124) ENSHGLG00000010627 ENSHGLG00000047556 ENSHGLG00000003394 ENSHGLG00000003167 #20 BBS7 (ENSHGLG00000002879) #21 ENSHGLG00000002599 #22 EXOSC9 (ENSHGLG00000002467) #23 SMIM43 (ENSHGLG00000036790) #24 ENSHGLG00000035708 #25 ENSHGLG00000038676 ENSHGLG00000002280 ENSHGLG00000004934 #26 ENSHGLG00000033298 TNIP3 (ENSHGLG00000003668) #27 NDNF (ENSHGLG00000003417) #28 PRDM5 (ENSHGLG00000003010) #29 ENSHGLG00000040170 ENSHGLG00000004064 ENSHGLG00000047434 #30 ENSHGLG00000000181 ENSHGLG00000049304 Naked mole-rat female MODERN SPECIES 24 ENSHGLG00000002410 ANKRD42 (ENSHGLG00000007952) ENSHGLG00000014010 ENSHGLG00000043756 ENSHGLG00000046380 ENSHGLG00000042096 DLG2 (ENSHGLG00000004449) ENSHGLG00000037235 ENSHGLG00000003500 ENSHGLG00000003233 CREBZF (ENSHGLG00000003083) CCDC89 (ENSHGLG00000037872) ENSHGLG00000002340 CCDC83 (ENSHGLG00000036065) PICALM (ENSHGLG00000001052) ENSHGLG00000001667 #22 EED (ENSHGLG00000001511) ENSHGLG00000041908 CCDC81 (ENSHGLG00000001095) ENSHGLG00000038302 ENSHGLG00000001103 ME3 (ENSHGLG00000001044) ENSHGLG00000000902 PRSS23 (ENSHGLG00000047569) FZD4 (ENSHGLG00000000698) ENSHGLG00000032437 ENSHGLG00000043753 TMEM135 (ENSHGLG00000001739) ENSHGLG00000045425 ENSHGLG00000034306 RAB38 (ENSHGLG00000041890)