Sarcopterygii	ANCESTRAL SPECIES	95	ENSGT00720000108822	ENSGT00940000153969.b	ENSGT00940000165503	ENSGT00940000161996	ENSGT00940000157440	ENSGT00390000016151	ENSGT00940000154486.b.a.a.b	ENSGT00940000154486.b.b	ENSGT00940000155311.B	ENSGT00940000161997.a	ENSGT00940000166348	ENSGT00940000155126 #19	ENSGT00940000168433	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000157137 #24	ENSGT00940000154695 #26	ENSGT00390000005983	ENSGT00940000157192 #27	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447 #33	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000159094 #37	ENSGT00940000156307.b	ENSGT00390000012547.b
Tetrapoda	ANCESTRAL SPECIES	6	ENSGT00940000156462.C	ENSGT00940000156462.B	ENSGT00950000183138.a.b	ENSGT00950000185272	ENSGT00940000161839	ENSGT00530000063564.b	ENSGT00940000165690	ENSGT00940000159224	ENSGT00940000154349	ENSGT00940000163794	ENSGT00940000166348	ENSGT00940000155126 #19	ENSGT00940000168433	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000157137 #24	ENSGT00940000154695 #26	ENSGT00390000005983	ENSGT00940000157192 #27	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447 #33	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000159094 #37	ENSGT00940000156307.b	ENSGT00390000012547.b
Amniota	ANCESTRAL SPECIES	6	ENSGT00940000156462.B	ENSGT00950000183138.a.b	ENSGT00390000005489	ENSGT00940000161839	ENSGT00530000063564.b	ENSGT00940000165690	ENSGT00390000016508	ENSGT00940000159224	ENSGT00940000154349	ENSGT00940000163794	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00940000168433	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447 #33	ENSGT01030000235330	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000159094 #37	ENSGT00940000156307.b
Mammalia	ANCESTRAL SPECIES	6											ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00940000168433	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447 #33	ENSGT01030000235330	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000159094 #37	ENSGT00940000156307.b
Theria	ANCESTRAL SPECIES	5	ENSGT00940000155400.B	ENSGT00390000000539 #7	ENSGT00940000155890 #8	ENSGT00940000158542 #9	ENSGT00390000016988.a.b ##11	ENSGT00940000157608 #12	ENSGT00940000158179 #13	ENSGT00940000153239.A #14	ENSGT00390000015276 #16	ENSGT00940000156882 #17	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00940000168433	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447 #33	ENSGT01030000235330	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000159094 #37	ENSGT00940000156307.b
Eutheria	ANCESTRAL SPECIES	10	ENSGT00940000155400.B	ENSGT00390000000539 #7	ENSGT00940000155890 #8	ENSGT00940000158542 #9	ENSGT00390000016988.a.b ##11	ENSGT00940000157608 #12	ENSGT00940000158179 #13	ENSGT00940000153239.A #14	ENSGT00390000015276 #16	ENSGT00940000156882 #17	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00940000168433	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447 #33	ENSGT01030000235330	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000159094 #37	ENSGT00940000156307.b
Boreoeutheria	ANCESTRAL SPECIES	14	ENSGT00940000155400.B	ENSGT00390000000539 #7	ENSGT00940000155890 #8	ENSGT00940000158542 #9	ENSGT00390000016988.a.b ##11	ENSGT00940000157608 #12	ENSGT00940000158179 #13	ENSGT00940000153239.A #14	ENSGT00390000015276 #16	ENSGT00940000156882 #17	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00940000168433	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00390000002231.d.b	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447 #33	ENSGT01030000235330	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000159094 #37
Euarchontoglires	ANCESTRAL SPECIES	14	ENSGT00940000155400.B	ENSGT00390000000539 #7	ENSGT00940000155890 #8	ENSGT00940000158542 #9	ENSGT00390000016988.a.b ##11	ENSGT00940000157608 #12	ENSGT00940000158179 #13	ENSGT00940000153239.A #14	ENSGT00390000015276 #16	ENSGT00940000156882 #17	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00940000168433	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00390000002231.d.b	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447 #33	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000159094 #37	ENSGT00940000156307.b
Primates	ANCESTRAL SPECIES	13	ENSGT00940000154044.a.b	ENSGT00940000155400.B	ENSGT00390000000539 #7	ENSGT00940000155890 #8	ENSGT00940000158542 #9	ENSGT00390000016988.a.b ##11	ENSGT00940000157608 #12	ENSGT00940000158179 #13	ENSGT00940000153239.A #14	ENSGT00390000015276 #16	ENSGT00940000156882 #17	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00390000002231.d.b	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447 #33	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000159094 #37	ENSGT00940000156307.b
Strepsirrhini	ANCESTRAL SPECIES	10	ENSGT00940000155400.B	ENSGT00390000000539 #7	ENSGT00940000155890 #8	ENSGT00940000158542 #9	ENSGT00390000016988.a.b ##11	ENSGT00390000016988.b #11	ENSGT00940000157608 #12	ENSGT00940000158179 #13	ENSGT00940000153239.A #14	ENSGT00390000015276 #16	ENSGT00940000156882 #17	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00390000004553 #20	ENSGT00940000157295.e #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00390000002231.d.b	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447 #33	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000159094 #37	ENSGT00940000156307.b
Bushbaby	MODERN SPECIES	128	TNP1 (ENSOGAG00000008996) #7	IGFBP5 (ENSOGAG00000024780) #8	IGFBP2 (ENSOGAG00000003363) #9	ENSOGAG00000031606 #10	ENSOGAG00000000817 #11	SMARCAL1 (ENSOGAG00000001980) #12	MARCHF4 (ENSOGAG00000028676) #13	XRCC5 (ENSOGAG00000001977) #14	ENSOGAG00000032096 #15	TMEM169 (ENSOGAG00000004438) #16	PECR (ENSOGAG00000004437) #17	MREG (ENSOGAG00000002252) #18	FN1 (ENSOGAG00000005042) #19	ATIC (ENSOGAG00000005039) #20	ABCA12 (ENSOGAG00000016828) #21	BARD1 (ENSOGAG00000009078) #22	VWC2L (ENSOGAG00000004042) #23	IKZF2 (ENSOGAG00000016680) #24	ENSOGAG00000010768 #25	ENSOGAG00000028178 #26	CPS1 (ENSOGAG00000005623) #27	LANCL1 (ENSOGAG00000005620) #28	MYL1 (ENSOGAG00000009848) #29	ENSOGAG00000027184 #30	ACADL (ENSOGAG00000009844) #31	KANSL1L (ENSOGAG00000002780) #32	ENSOGAG00000002778 #33	UNC80 (ENSOGAG00000002771) #34	ENSOGAG00000025605 #35	ENSOGAG00000024989 #36	PTH2R (ENSOGAG00000007106) #37
Lemuriformes	ANCESTRAL SPECIES	5	ENSGT00940000155400.B	ENSGT00390000000539 #7	ENSGT00940000155890 #8	ENSGT00940000158542 #9	ENSGT00390000016988.a.b ##11	ENSGT00390000016988.b #11	ENSGT00940000157608 #12	ENSGT00940000158179 #13	ENSGT00940000153239.A #14	ENSGT00390000015276 #16	ENSGT00940000156882 #17	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00390000004553 #20	ENSGT00940000157295.e #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00390000002231.d.b	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447 #33	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000159094 #37	ENSGT00940000156307.b
Mouse lemur	MODERN SPECIES	30	TNS1 (ENSMICG00000017467)	ENSMICG00000035435	TNP1 (ENSMICG00000045994) #7	IGFBP5 (ENSMICG00000028205) #8	IGFBP2 (ENSMICG00000008989) #9	RPL37A (ENSMICG00000008988) #11	SMARCAL1 (ENSMICG00000008967) #12	MARCHF4 (ENSMICG00000027749) #13	XRCC5 (ENSMICG00000008946) #14	TMEM169 (ENSMICG00000044265) #16	PECR (ENSMICG00000036951) #17	MREG (ENSMICG00000033346) #18	FN1 (ENSMICG00000014594) #19	ENSMICG00000044310 #20	ABCA12 (ENSMICG00000014502) #21	BARD1 (ENSMICG00000014488) #22	VWC2L (ENSMICG00000034610) #23	SPAG16 (ENSMICG00000013876)	ENSMICG00000043031	ATIC (ENSMICG00000014573) #20	IKZF2 (ENSMICG00000013862) #24	ENSMICG00000037305	ERBB4 (ENSMICG00000036699) #26	CPS1 (ENSMICG00000010886) #27	LANCL1 (ENSMICG00000033807) #28	MYL1 (ENSMICG00000010008) #29	ACADL (ENSMICG00000009991) #31	KANSL1L (ENSMICG00000009963) #32	ENSMICG00000009953 #33	UNC80 (ENSMICG00000009921) #34	MAP2 (ENSMICG00000009887) #35
Lemuriformes_a	ANCESTRAL SPECIES	15	ENSGT00390000000539 #7	ENSGT00940000155890 #8	ENSGT00940000158542 #9	ENSGT00390000016988.a.b ##11	ENSGT00390000016988.b #11	ENSGT00940000157608 #12	ENSGT00940000158179 #13	ENSGT00940000153239.A #14	ENSGT00390000015276 #16	ENSGT00940000156882 #17	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00390000004553 #20	ENSGT00940000157295.e #21	ENSGT00940000157295.f ##21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00390000002231.d.b	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447 #33	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000159094 #37	ENSGT00940000156307.b
Greater bamboo lemur	MODERN SPECIES	1162													ENSPSMG00000001279	ENSPSMG00000001301 ##21	ENSPSMG00000001319	BARD1 (ENSPSMG00000001538) #22	VWC2L (ENSPSMG00000001684) #23	SPAG16 (ENSPSMG00000001710)	IKZF2 (ENSPSMG00000001774) #24	ENSPSMG00000001924	ERBB4 (ENSPSMG00000002053) #26	ENSPSMG00000002194
Coquerels sifaka	MODERN SPECIES	500								MARCHF4 (ENSPCOG00000021290) #13	ENSPCOG00000013913 #14	TMEM169 (ENSPCOG00000013793) #16	PECR (ENSPCOG00000014454) #17	MREG (ENSPCOG00000016864) #18	FN1 (ENSPCOG00000024595) #19	ATIC (ENSPCOG00000024839) #20	ABCA12 (ENSPCOG00000022336) ##21	BARD1 (ENSPCOG00000001956) #22	VWC2L (ENSPCOG00000001080) #23
Haplorrhini	ANCESTRAL SPECIES	10	ENSGT00940000154044.a.b	ENSGT00940000155400.B	ENSGT00390000000539 #7	ENSGT00940000155890 #8	ENSGT00940000158542 #9	ENSGT00390000016988.a.b ##11	ENSGT00940000157608 #12	ENSGT00940000158179 #13	ENSGT00940000153239.A #14	ENSGT00390000015276 #16	ENSGT00940000156882 #17	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00390000002231.d.b	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447 #33	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000159094 #37	ENSGT00940000156307.b
Simiiformes	ANCESTRAL SPECIES	15	ENSGT00390000000539 #7	ENSGT00940000155890 #8	ENSGT00940000158542 #9	ENSGT00390000016988.b #11	ENSGT00550000074820.h.cb	ENSGT00390000016988.a.b ##11	ENSGT00940000157608 #12	ENSGT00940000158179 #13	ENSGT00940000153239.A #14	ENSGT00390000015276 #16	ENSGT00940000156882 #17	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00390000002231.d.b	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00910000147691	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447 #33	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000159094 #37
Catarrhini	ANCESTRAL SPECIES	16	ENSGT00390000000539 #7	ENSGT00940000155890 #8	ENSGT00940000158542 #9	ENSGT00390000016988.a.a.a.a.a.b.d ##11	ENSGT00550000074820.h.cb	ENSGT00390000016988.a.b ##11	ENSGT00940000157608 #12	ENSGT00940000158179 #13	ENSGT00940000153239.A #14	ENSGT00390000015276 #16	ENSGT00940000156882 #17	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00390000002231.d.b	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00910000147691	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00910000147420	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447.p.b #33	ENSGT00640000091496 #34	ENSGT00940000156597.b #35
Hominoidea	ANCESTRAL SPECIES	15	ENSGT00940000155890 #8	ENSGT00940000158542 #9	ENSGT00550000074820.h.bb.b.b	ENSGT00390000016988.b #11	ENSGT00550000074820.h.cb	ENSGT00390000016988.a.b ##11	ENSGT00940000157608 #12	ENSGT00940000158179 #13	ENSGT00940000153239.A #14	ENSGT00390000015276 #16	ENSGT00940000156882 #17	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00390000002231.d.b	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00910000147420	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447.p.b #33	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000159094 #37
Hominidae	ANCESTRAL SPECIES	17	ENSGT00560000078504	ENSGT00390000000539 #7	ENSGT00940000155890 #8	ENSGT00940000158542 #9	ENSGT00550000074820.h.cb	ENSGT00390000016988.a.b ##11	ENSGT00940000157608 #12	ENSGT00940000158179 #13	ENSGT00940000153239.A #14	ENSGT00390000015276 #16	ENSGT00940000156882 #17	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00390000002231.d.b	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00910000147420	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447.q #33	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000159094 #37
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	14	ENSGT00390000000539 #7	ENSGT00940000155890 #8	ENSGT00940000158542 #9	ENSGT00390000016988.a.b ##11	ENSGT00550000074820.h.cb	ENSGT00390000016988.b #11	ENSGT00940000157608 #12	ENSGT00940000158179 #13	ENSGT00940000153239.A #14	ENSGT00390000015276.i #16	ENSGT00940000156882 #17	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00910000148020	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00910000147420	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447.q #33	ENSGT00390000001447.p.b #33	ENSGT00640000091496 #34	ENSGT00940000156597.b #35
Homo/Pan group	ANCESTRAL SPECIES	13	ENSGT00390000000539 #7	ENSGT00940000155890 #8	ENSGT00940000158542 #9	ENSGT00390000016988.a.b ##11	ENSGT00550000074820.h.cb	ENSGT00390000016988.b #11	ENSGT00940000157608 #12	ENSGT00940000158179 #13	ENSGT00940000153239.A #14	ENSGT00390000015276.i #16	ENSGT00940000156882 #17	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00910000148020	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00910000147420	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447.p.b #33	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000159094 #37
Pan	ANCESTRAL SPECIES	12	ENSGT00560000078504	ENSGT00390000000539 #7	ENSGT00940000155890 #8	ENSGT00940000158542 #9	ENSGT00550000074820.h.cb	ENSGT00390000016988.b #11	ENSGT00940000157608 #12	ENSGT00940000158179 #13	ENSGT00940000153239.A #14	ENSGT00390000015276.i #16	ENSGT00940000156882 #17	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00910000148020	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00910000147420	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447.p.b #33	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000159094 #37
Bonobo	MODERN SPECIES	15	TNS1 (ENSPPAG00000040585)	TNP1 (ENSPPAG00000026261) #7	IGFBP5 (ENSPPAG00000026552) #8	ENSPPAG00000025854 #9	ENSPPAG00000026236	ENSPPAG00000027287 #11	SMARCAL1 (ENSPPAG00000042500) #12	MARCHF4 (ENSPPAG00000035784) #13	XRCC5 (ENSPPAG00000032493) #14	TMEM169 (ENSPPAG00000043337) #16	PECR (ENSPPAG00000040758) #17	MREG (ENSPPAG00000024976) #18	FN1 (ENSPPAG00000041188) #19	ATIC (ENSPPAG00000031346) #20	ABCA12 (ENSPPAG00000027092) #21	BARD1 (ENSPPAG00000043112) #22	VWC2L (ENSPPAG00000037418) #23	SPAG16 (ENSPPAG00000043643)	IKZF2 (ENSPPAG00000041873) #24	ENSPPAG00000023325	ERBB4 (ENSPPAG00000041527) #26	CPS1 (ENSPPAG00000037514) #27	LANCL1 (ENSPPAG00000039753) #28	MYL1 (ENSPPAG00000032667) #29	ENSPPAG00000009402	ACADL (ENSPPAG00000035916) #31	KANSL1L (ENSPPAG00000038917) #32	ENSPPAG00000034521 #33	UNC80 (ENSPPAG00000038207) #34	MAP2 (ENSPPAG00000042145) #35	PTH2R (ENSPPAG00000000087) #37
Chimpanzee	MODERN SPECIES	15	ENSPTRG00000041548	TNP1 (ENSPTRG00000012904) #7	IGFBP5 (ENSPTRG00000012903) #8	IGFBP2 (ENSPTRG00000012901) #9	ENSPTRG00000012900	ENSPTRG00000050901 #11	SMARCAL1 (ENSPTRG00000012898) #12	MARCHF4 (ENSPTRG00000012897) #13	XRCC5 (ENSPTRG00000012896) #14	TMEM169 (ENSPTRG00000012895) #16	PECR (ENSPTRG00000012894) #17	MREG (ENSPTRG00000012893) #18	FN1 (ENSPTRG00000012892) #19	ATIC (ENSPTRG00000012891) #20	ABCA12 (ENSPTRG00000012889) #21	BARD1 (ENSPTRG00000012888) #22	VWC2L (ENSPTRG00000012886) #23	SPAG16 (ENSPTRG00000012885)	IKZF2 (ENSPTRG00000048797) #24	ENSPTRG00000050921	ERBB4 (ENSPTRG00000012883) #26	CPS1 (ENSPTRG00000012881) #27	LANCL1 (ENSPTRG00000012880) #28	MYL1 (ENSPTRG00000012879) #29	ENSPTRG00000044780	ACADL (ENSPTRG00000012876) #31	ENSPTRG00000043540	KANSL1L (ENSPTRG00000012875) #32	ENSPTRG00000048818 #33	UNC80 (ENSPTRG00000012873) #34	MAP2 (ENSPTRG00000012869) #35
Human	MODERN SPECIES	11	RUFY4 (ENSG00000188282)	TNS1 (ENSG00000079308)	TNP1 (ENSG00000118245) #7	IGFBP5 (ENSG00000115461) #8	IGFBP2 (ENSG00000115457) #9	RPL37A (ENSG00000197756) ##11	SMARCAL1 (ENSG00000138375) #12	MARCHF4 (ENSG00000144583) #13	XRCC5 (ENSG00000079246) #14	TMEM169 (ENSG00000163449) #16	PECR (ENSG00000115425) #17	MREG (ENSG00000118242) #18	FN1 (ENSG00000115414) #19	ATIC (ENSG00000138363) #20	ABCA12 (ENSG00000144452) #21	BARD1 (ENSG00000138376) #22	VWC2L (ENSG00000174453) #23	SPAG16 (ENSG00000144451)	IKZF2 (ENSG00000030419) #24	ERBB4 (ENSG00000178568) #26	CPS1 (ENSG00000021826) #27	LANCL1 (ENSG00000115365) #28	MYL1 (ENSG00000168530) #29	ACADL (ENSG00000115361) #31	KANSL1L (ENSG00000144445) #32	RPE (ENSG00000197713) #33	UNC80 (ENSG00000144406) #34	MAP2 (ENSG00000078018) #35	PTH2R (ENSG00000144407) #37	PIKFYVE (ENSG00000115020)	IDH1 (ENSG00000138413)
Gorilla	MODERN SPECIES	15	ENSGGOG00000022571	IGFBP5 (ENSGGOG00000016946) #8	IGFBP2 (ENSGGOG00000011721) #9	ENSGGOG00000026130	RPL37A (ENSGGOG00000014827) #11	SMARCAL1 (ENSGGOG00000014815) #12	MARCHF4 (ENSGGOG00000000174) #13	XRCC5 (ENSGGOG00000011471) #14	TMEM169 (ENSGGOG00000011466) #16	ENSGGOG00000041701 #16	PECR (ENSGGOG00000015630) #17	MREG (ENSGGOG00000027103) #18	FN1 (ENSGGOG00000015010) #19	ATIC (ENSGGOG00000007916) #20	ABCA12 (ENSGGOG00000011952) #21	BARD1 (ENSGGOG00000014597) #22	VWC2L (ENSGGOG00000016106) #23	SPAG16 (ENSGGOG00000043689)	IKZF2 (ENSGGOG00000011301) #24	ENSGGOG00000039432	ERBB4 (ENSGGOG00000014309) #26	CPS1 (ENSGGOG00000028226) #27	LANCL1 (ENSGGOG00000041237) #28	MYL1 (ENSGGOG00000011991) #29	ENSGGOG00000036486	ACADL (ENSGGOG00000006541) #31	KANSL1L (ENSGGOG00000011150) #32	ENSGGOG00000043889 #33	UNC80 (ENSGGOG00000010917) #34	MAP2 (ENSGGOG00000027310) #35	ENSGGOG00000028471 #36
Orangutan	MODERN SPECIES	15	ENSPPYG00000033641	TNP1 (ENSPPYG00000013158) #7	ENSPPYG00000032583 #8	IGFBP2 (ENSPPYG00000013156) #9	ENSPPYG00000035590	RPL37A (ENSPPYG00000025878) ##11	SMARCAL1 (ENSPPYG00000013155) #12	MARCHF4 (ENSPPYG00000013154) #13	XRCC5 (ENSPPYG00000013152) #14	TMEM169 (ENSPPYG00000037480) #16	PECR (ENSPPYG00000013150) #17	MREG (ENSPPYG00000013149) #18	FN1 (ENSPPYG00000013148) #19	ATIC (ENSPPYG00000013146) #20	ABCA12 (ENSPPYG00000013145) #21	BARD1 (ENSPPYG00000013144) #22	VWC2L (ENSPPYG00000013143) #23	ENSPPYG00000034405	SPAG16 (ENSPPYG00000013141)	IKZF2 (ENSPPYG00000013139) #24	ENSPPYG00000035873	ERBB4 (ENSPPYG00000013138) #26	CPS1 (ENSPPYG00000013137) #27	LANCL1 (ENSPPYG00000033825) #28	MYL1 (ENSPPYG00000013135) #29	ENSPPYG00000013134	ACADL (ENSPPYG00000037453) #31	KANSL1L (ENSPPYG00000013133) #32	RPE (ENSPPYG00000030957) #33	UNC80 (ENSPPYG00000013131) #34	MAP2 (ENSPPYG00000013128) #35
Gibbon	MODERN SPECIES	14	TNP1 (ENSNLEG00000007281) #7	IGFBP5 (ENSNLEG00000007279) #8	IGFBP2 (ENSNLEG00000007277) #9	ENSNLEG00000028695	ENSNLEG00000007276 #11	SMARCAL1 (ENSNLEG00000007272) #12	MARCHF4 (ENSNLEG00000007271) #13	ENSNLEG00000033854	XRCC5 (ENSNLEG00000007267) #14	TMEM169 (ENSNLEG00000034416) #16	PECR (ENSNLEG00000007265) #17	MREG (ENSNLEG00000007262) #18	FN1 (ENSNLEG00000007224) #19	ATIC (ENSNLEG00000007215) #20	ABCA12 (ENSNLEG00000007208) #21	BARD1 (ENSNLEG00000007205) #22	VWC2L (ENSNLEG00000007204) #23	SPAG16 (ENSNLEG00000007201)	IKZF2 (ENSNLEG00000031188) #24	ERBB4 (ENSNLEG00000007195) #26	CPS1 (ENSNLEG00000007187) #27	LANCL1 (ENSNLEG00000007182) #28	MYL1 (ENSNLEG00000007180) #29	ENSNLEG00000007179	ACADL (ENSNLEG00000007175) #31	ENSNLEG00000007174 #32	ENSNLEG00000027381 #33	UNC80 (ENSNLEG00000007162) #34	MAP2 (ENSNLEG00000007156) #35	ENSNLEG00000035981 #36	PTH2R (ENSNLEG00000007155) #37
Cercopithecidae	ANCESTRAL SPECIES	13	ENSGT00940000155890 #8	ENSGT00940000158542 #9	ENSGT00390000016988.a.b ##11	ENSGT00550000074820.h.cb	ENSGT00390000016988.b #11	ENSGT00940000157608 #12	ENSGT00940000158179 #13	ENSGT00910000147196	ENSGT00940000153239.A #14	ENSGT00390000015276 #16	ENSGT00940000156882 #17	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00390000002231.d.b	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00910000147691	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00910000147420	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447.q #33	ENSGT00390000001447.p.b #33	ENSGT00640000091496 #34
Cercopithecinae	ANCESTRAL SPECIES	11	ENSGT00910000147575	ENSGT00390000000539 #7	ENSGT00940000155890 #8	ENSGT00940000158542 #9	ENSGT00390000016988.a.b ##11	ENSGT00940000157608 #12	ENSGT00940000158179 #13	ENSGT00910000147196	ENSGT00940000153239.A #14	ENSGT00390000015276 #16	ENSGT00940000156882 #17	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00390000002231.d.b	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447.q #33	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00390000015257.s.a	ENSGT00940000159094 #37
Cercopithecinae_a	ANCESTRAL SPECIES	16	ENSGT00910000147575	ENSGT00390000000539 #7	ENSGT00940000155890 #8	ENSGT00940000158542 #9	ENSGT00390000016988.a.b ##11	ENSGT00940000157608 #12	ENSGT00940000158179 #13	ENSGT00910000147196	ENSGT00940000153239.A #14	ENSGT00390000015276 #16	ENSGT00940000156882 #17	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00390000002231.d.b	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00910000148013	ENSGT00390000001447.p.b #33	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00390000015257.s.a
Macaca	ANCESTRAL SPECIES	15	ENSGT00560000078504	ENSGT00910000147575	ENSGT00940000155890 #8	ENSGT00940000158542 #9	ENSGT00390000016988.a.b ##11	ENSGT00940000157608 #12	ENSGT00940000158179 #13	ENSGT00910000147196	ENSGT00940000153239.A #14	ENSGT00390000015276 #16	ENSGT00940000156882 #17	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00910000148013	ENSGT00390000001447.p.b #33	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00950000183099.u.a.e.i.a	ENSGT00940000159094 #37
Macaca_a	ANCESTRAL SPECIES	17	ENSGT00940000154044.a.b	ENSGT00940000155400.B	ENSGT01100000263539.b.b.b.b.a.a.a.b.b.b	ENSGT00910000147575	ENSGT00940000155890 #8	ENSGT00940000158542 #9	ENSGT00390000016988.a.b ##11	ENSGT00940000157608 #12	ENSGT00940000158179 #13	ENSGT00940000153239.A #14	ENSGT00390000015276 #16	ENSGT00940000156882 #17	ENSGT00940000155126 #19	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00390000002231.d.b	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00530000063688.a #32	ENSGT00390000001447.q #33	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00950000183099.u.a.e.i.a	ENSGT00960000191503.d	ENSGT00940000159094 #37
Rhesus	MODERN SPECIES	3	ENSMMUG00000065034	TNP1 (ENSMMUG00000019257) #7	ENSMMUG00000063058	IGFBP5 (ENSMMUG00000041480) #8	IGFBP2 (ENSMMUG00000054183) #9	RPL37A (ENSMMUG00000019544) ##11	ENSMMUG00000006818	SMARCAL1 (ENSMMUG00000019539) #12	MARCHF4 (ENSMMUG00000020824) #13	XRCC5 (ENSMMUG00000001927) #14	TMEM169 (ENSMMUG00000053869) #16	PECR (ENSMMUG00000017964) #17	FN1 (ENSMMUG00000012321) #19	ATIC (ENSMMUG00000012318) #20	ABCA12 (ENSMMUG00000014813) #21	BARD1 (ENSMMUG00000005700) #22	VWC2L (ENSMMUG00000054519) #23	ENSMMUG00000065281	ENSMMUG00000064880	SPAG16 (ENSMMUG00000000382)	IKZF2 (ENSMMUG00000000381) #24	ENSMMUG00000061342	ENSMMUG00000058114	ERBB4 (ENSMMUG00000001674) #26	CPS1 (ENSMMUG00000010508) #27	LANCL1 (ENSMMUG00000054937) #28	MYL1 (ENSMMUG00000010519) #29	KANSL1L (ENSMMUG00000010515) #32	RPE (ENSMMUG00000010513) #33	UNC80 (ENSMMUG00000002809) #34	MAP2 (ENSMMUG00000018741) #35
Crab-eating macaque	MODERN SPECIES	3	ENSMFAG00000060168	ENSMFAG00000042551	IGFBP5 (ENSMFAG00000040116) #8	IGFBP2 (ENSMFAG00000040045) #9	RPL37A (ENSMFAG00000043631) ##11	SMARCAL1 (ENSMFAG00000034369) #12	MARCHF4 (ENSMFAG00000045960) #13	XRCC5 (ENSMFAG00000039293) #14	TMEM169 (ENSMFAG00000055690) #16	PECR (ENSMFAG00000003448) #17	ENSMFAG00000063886	ENSMFAG00000055847	FN1 (ENSMFAG00000032168) #19	ATIC (ENSMFAG00000044630) #20	ABCA12 (ENSMFAG00000041527) #21	BARD1 (ENSMFAG00000032566) #22	VWC2L (ENSMFAG00000004450) #23	ENSMFAG00000056823	SPAG16 (ENSMFAG00000036303)	IKZF2 (ENSMFAG00000049387) #24	ENSMFAG00000059453	ENSMFAG00000047331	ERBB4 (ENSMFAG00000042352) #26	CPS1 (ENSMFAG00000044079) #27	LANCL1 (ENSMFAG00000041765) #28	MYL1 (ENSMFAG00000031549) #29	KANSL1L (ENSMFAG00000031878) #32	ENSMFAG00000001492 #33	UNC80 (ENSMFAG00000038823) #34	MAP2 (ENSMFAG00000037191) #35	ENSMFAG00000040051
Pig-tailed macaque	MODERN SPECIES	570	ENSMNEG00000011932	ENSMNEG00000031022	IGFBP5 (ENSMNEG00000035172) #8	IGFBP2 (ENSMNEG00000040591) #9	RPL37A (ENSMNEG00000031830) ##11	SMARCAL1 (ENSMNEG00000036205) #12	MARCHF4 (ENSMNEG00000033537) #13	ENSMNEG00000006764	XRCC5 (ENSMNEG00000015360) #14	TMEM169 (ENSMNEG00000034924) #16	PECR (ENSMNEG00000043315) #17	MREG (ENSMNEG00000029517) #18	FN1 (ENSMNEG00000029457) #19	ATIC (ENSMNEG00000033660) #20	ABCA12 (ENSMNEG00000031040) #21	BARD1 (ENSMNEG00000042003) #22	VWC2L (ENSMNEG00000044264) #23	SPAG16 (ENSMNEG00000033132)	IKZF2 (ENSMNEG00000031320) #24	ERBB4 (ENSMNEG00000041797) #26	ENSMNEG00000017162	ENSMNEG00000034167	CPS1 (ENSMNEG00000035547) #27	LANCL1 (ENSMNEG00000029637) #28	MYL1 (ENSMNEG00000036767) #29	ACADL (ENSMNEG00000012188) #31	ENSMNEG00000014156	KANSL1L (ENSMNEG00000035464) #32	ENSMNEG00000040500 #33	UNC80 (ENSMNEG00000035845) #34	MAP2 (ENSMNEG00000038593) #35
Cercopithecinae_b	ANCESTRAL SPECIES	10	ENSGT00390000000539 #7	ENSGT00940000155890 #8	ENSGT00940000158542 #9	ENSGT00390000016988.a.a.a.a.a.b.d ##11	ENSGT00390000016988.b #11	ENSGT00940000157608 #12	ENSGT00940000158179 #13	ENSGT00910000147196	ENSGT00940000153239.A #14	ENSGT00390000015276 #16	ENSGT00940000156882 #17	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00530000063186.b.b #28	ENSGT00510000046986.n.a.d.b	ENSGT01030000234570.d.a #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00910000148013	ENSGT00390000001447.p.b #33	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00390000015257.s.a
Olive baboon	MODERN SPECIES	1	TNS1 (ENSPANG00000009910)	TNP1 (ENSPANG00000037114) #7	IGFBP5 (ENSPANG00000050266) #8	IGFBP2 (ENSPANG00000024435) #9	ENSPANG00000036088 ##11	SMARCAL1 (ENSPANG00000017812) #12	MARCHF4 (ENSPANG00000022150) #13	XRCC5 (ENSPANG00000016342) #14	TMEM169 (ENSPANG00000018887) #16	ENSPANG00000042211	PECR (ENSPANG00000009641) #17	ENSPANG00000041320	FN1 (ENSPANG00000005725) #19	ATIC (ENSPANG00000012147) #20	ABCA12 (ENSPANG00000005668) #21	BARD1 (ENSPANG00000019723) #22	VWC2L (ENSPANG00000046744) #23	ENSPANG00000037591	SPAG16 (ENSPANG00000011416)	IKZF2 (ENSPANG00000016694) #24	ENSPANG00000050738	ENSPANG00000048059	ERBB4 (ENSPANG00000020599) #26	CPS1 (ENSPANG00000008478) #27	LANCL1 (ENSPANG00000043351) #28	ENSPANG00000050010	MYL1 (ENSPANG00000005181) #29	KANSL1L (ENSPANG00000000746) #32	ENSPANG00000005182 #33	UNC80 (ENSPANG00000024759) #34	MAP2 (ENSPANG00000019944) #35
Cercopithecinae_d	ANCESTRAL SPECIES		ENSGT00560000078504	ENSGT00910000147575	ENSGT00940000155890 #8	ENSGT00940000158542 #9	ENSGT00390000016988.b #11	ENSGT00940000157608 #12	ENSGT00940000158179 #13	ENSGT00910000147196	ENSGT00940000153239.A #14	ENSGT00390000015276 #16	ENSGT00940000156882 #17	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00940000154695 #26	ENSGT00910000147161	ENSGT00910000147691	ENSGT00940000157192 #27	ENSGT00530000063186.b.b #28	ENSGT00510000046986.n.a.d.b	ENSGT01030000234570.d.a #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00910000148013	ENSGT00390000001447.p.b #33	ENSGT00640000091496 #34
Drill	MODERN SPECIES	1551															ABCA12 (ENSMLEG00000034879) #21	BARD1 (ENSMLEG00000031483) #22	VWC2L (ENSMLEG00000030943) #23
Sooty mangabey	MODERN SPECIES	570													FN1 (ENSCATG00000034092) #19	ATIC (ENSCATG00000033414) #20	ABCA12 (ENSCATG00000042293) #21	BARD1 (ENSCATG00000043060) #22	VWC2L (ENSCATG00000039480) #23	SPAG16 (ENSCATG00000032997)	IKZF2 (ENSCATG00000029418) #24	ERBB4 (ENSCATG00000043272) #26	ENSCATG00000003304	CPS1 (ENSCATG00000033305) #27	LANCL1 (ENSCATG00000038900) #28	ENSCATG00000031803	MYL1 (ENSCATG00000044624) #29	ACADL (ENSCATG00000041550) #31	ENSCATG00000006457	KANSL1L (ENSCATG00000043995) #32	ENSCATG00000043868 #33	UNC80 (ENSCATG00000041534) #34	MAP2 (ENSCATG00000042916) #35
Vervet Monkey	MODERN SPECIES	1	RUFY4 (ENSCSAG00000008961)	TNS1 (ENSCSAG00000008987)	ENSCSAG00000009002	ENSCSAG00000009019	TNP1 (ENSCSAG00000009030) #7	IGFBP5 (ENSCSAG00000009041) #8	IGFBP2 (ENSCSAG00000009048) #9	SMARCAL1 (ENSCSAG00000009061) #12	MARCHF4 (ENSCSAG00000009072) #13	XRCC5 (ENSCSAG00000009095) #14	TMEM169 (ENSCSAG00000009111) #16	PECR (ENSCSAG00000009122) #17	MREG (ENSCSAG00000009131) #18	FN1 (ENSCSAG00000009162) #19	ABCA12 (ENSCSAG00000009303) #21	BARD1 (ENSCSAG00000009338) #22	VWC2L (ENSCSAG00000009346) #23	ENSCSAG00000009388	IKZF2 (ENSCSAG00000009405) #24	ENSCSAG00000009457 #26	ENSCSAG00000009490 #26	CPS1 (ENSCSAG00000009759) #27	LANCL1 (ENSCSAG00000009844) #28	MYL1 (ENSCSAG00000009850) #29	ACADL (ENSCSAG00000009898) #31	KANSL1L (ENSCSAG00000009924) #32	ENSCSAG00000009931 #33	UNC80 (ENSCSAG00000009965) #34	MAP2 (ENSCSAG00000009974) #35	ENSCSAG00000009983 #36	ENSCSAG00000018772
Rhinopithecus	ANCESTRAL SPECIES	313	ENSGT00910000147575	ENSGT00940000155890 #8	ENSGT00940000158542 #9	ENSGT00550000074820.h.cb	ENSGT00390000016988.b #11	ENSGT00940000157608 #12	ENSGT00940000158179 #13	ENSGT00910000147196	ENSGT00940000153239.A #14	ENSGT00390000015276 #16	ENSGT00940000156882 #17	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00390000004553.k #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23
Black snub-nosed monkey	MODERN SPECIES	1830																BARD1 (ENSRBIG00000043580) #22	VWC2L (ENSRBIG00000036468) #23
Golden snub-nosed monkey	MODERN SPECIES	1649													FN1 (ENSRROG00000034811) #19	ENSRROG00000024282 #20	ABCA12 (ENSRROG00000045065) #21	BARD1 (ENSRROG00000028323) #22	VWC2L (ENSRROG00000001986) #23
Platyrrhini	ANCESTRAL SPECIES	9	ENSGT00940000155890 #8	ENSGT00390000002752.x.d	ENSGT00940000158542 #9	ENSGT00390000016988.b #11	ENSGT00550000074820.h.cb	ENSGT00390000016988.a.b ##11	ENSGT00940000157608 #12	ENSGT00940000158179 #13	ENSGT00940000153239.A.a #14	ENSGT00390000015276 #16	ENSGT00940000156882 #17	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00390000004553.m.a.b #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00910000147691	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447 #33	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000159094 #37	ENSGT00940000156307.b
Cebidae	ANCESTRAL SPECIES	11	ENSGT00940000155890 #8	ENSGT00390000002752.x.d	ENSGT00940000158542 #9	ENSGT00390000016988.b #11	ENSGT00550000074820.h.cb	ENSGT00390000016988.a.b ##11	ENSGT00940000157608 #12	ENSGT00940000158179 #13	ENSGT00940000153239.A.a #14	ENSGT00390000015276 #16	ENSGT00940000156882 #17	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00390000004553.m.a.b #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00530000063688.a #32	ENSGT00390000001447 #33	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000159094 #37	ENSGT00940000156307.b	ENSGT00390000012547.b.b.a	ENSGT00940000156150.f.a
Cebidae_a	ANCESTRAL SPECIES	16	ENSGT00390000000539 #7	ENSGT00940000155890 #8	ENSGT00390000002752.x.d	ENSGT00940000158542 #9	ENSGT00550000074820.h.cb	ENSGT00390000016988.a.b ##11	ENSGT00940000157608 #12	ENSGT00940000158179 #13	ENSGT00940000153239.A.a #14	ENSGT00390000015276 #16	ENSGT00940000156882 #17	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00390000004553.m.a.b #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00530000063688.a #32	ENSGT00390000001447 #33	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000159094 #37	ENSGT00940000156307.b	ENSGT00390000012547.b.b.a	ENSGT00940000156150.f.a
Capuchin	MODERN SPECIES	89	ENSCCAG00000020405	ENSCCAG00000021500 ##11	SMARCAL1 (ENSCCAG00000022646) #12	ASNA1 (ENSCCAG00000020440)	MARCHF4 (ENSCCAG00000031877) #13	XRCC5 (ENSCCAG00000027147) #14	ENSCCAG00000020388	TMEM169 (ENSCCAG00000030518) #16	PECR (ENSCCAG00000028783) #17	ENSCCAG00000031458	MREG (ENSCCAG00000034986) #18	FN1 (ENSCCAG00000021281) #19	ENSCCAG00000022620 #20	ABCA12 (ENSCCAG00000029993) #21	ENSCCAG00000020726	BARD1 (ENSCCAG00000021151) #22	VWC2L (ENSCCAG00000021422) #23	SPAG16 (ENSCCAG00000027929)	IKZF2 (ENSCCAG00000029869) #24	ENSCCAG00000016584	ERBB4 (ENSCCAG00000036465) #26
Bolivian squirrel monkey	MODERN SPECIES	56	TNP1 (ENSSBOG00000033620) #7	IGFBP5 (ENSSBOG00000019704) #8	ENSSBOG00000030539	ENSSBOG00000019110 #9	ENSSBOG00000021060	RPL37A (ENSSBOG00000032570) ##11	SMARCAL1 (ENSSBOG00000023338) #12	MARCHF4 (ENSSBOG00000031621) #13	XRCC5 (ENSSBOG00000029325) #14	TMEM169 (ENSSBOG00000035035) #16	ENSSBOG00000022001	MREG (ENSSBOG00000030269) #18	FN1 (ENSSBOG00000030941) #19	ATIC (ENSSBOG00000035246) #20	ABCA12 (ENSSBOG00000021012) #21	BARD1 (ENSSBOG00000024817) #22	VWC2L (ENSSBOG00000027487) #23	SPAG16 (ENSSBOG00000028079)	IKZF2 (ENSSBOG00000020703) #24	ERBB4 (ENSSBOG00000030062) #26	CPS1 (ENSSBOG00000001070) #27	LANCL1 (ENSSBOG00000020922) #28	MYL1 (ENSSBOG00000033791) #29	KANSL1L (ENSSBOG00000033776) #32	ENSSBOG00000019098 #33	UNC80 (ENSSBOG00000036149) #34	MAP2 (ENSSBOG00000036242) #35	ENSSBOG00000025322	PTH2R (ENSSBOG00000022880) #37	PIKFYVE (ENSSBOG00000031867)	ENSSBOG00000025738
Marmoset	MODERN SPECIES	18	IGFBP5 (ENSCJAG00000062900) #8	IGFBP2 (ENSCJAG00000012426) #9	ENSCJAG00000057313 #11	SMARCAL1 (ENSCJAG00000012377) #12	MARCHF4 (ENSCJAG00000012374) #13	XRCC5 (ENSCJAG00000012291) #14	TMEM169 (ENSCJAG00000068065) #16	PECR (ENSCJAG00000012258) #17	MREG (ENSCJAG00000037790) #18	ENSCJAG00000083626	FN1 (ENSCJAG00000011714) #19	ENSCJAG00000011695 #20	ENSCJAG00000072179	ABCA12 (ENSCJAG00000011510) #21	ENSCJAG00000082638	BARD1 (ENSCJAG00000011473) #22	ENSCJAG00000040361	VWC2L (ENSCJAG00000052055) #23	ENSCJAG00000083858	ENSCJAG00000058419	ENSCJAG00000075827	ENSCJAG00000057539	SPAG16 (ENSCJAG00000011448)	IKZF2 (ENSCJAG00000043858) #24	ENSCJAG00000055705	ENSCJAG00000074375	ERBB4 (ENSCJAG00000011307) #26	CPS1 (ENSCJAG00000010985) #27	LANCL1 (ENSCJAG00000038860) #28	MYL1 (ENSCJAG00000010924) #29	KANSL1L (ENSCJAG00000010851) #32
Mas night monkey	MODERN SPECIES	357	IGFBP5 (ENSANAG00000025346) #8	ENSANAG00000037097	IGFBP2 (ENSANAG00000024221) #9	ENSANAG00000034888	ENSANAG00000033950 ##11	SMARCAL1 (ENSANAG00000034980) #12	MARCHF4 (ENSANAG00000027574) #13	ENSANAG00000035228	XRCC5 (ENSANAG00000028373) #14	TMEM169 (ENSANAG00000022360) #16	PECR (ENSANAG00000020624) #17	ENSANAG00000026766 #18	FN1 (ENSANAG00000027282) #19	ENSANAG00000020375 #20	ABCA12 (ENSANAG00000035285) #21	BARD1 (ENSANAG00000026965) #22	ENSANAG00000034992	VWC2L (ENSANAG00000022669) #23	SPAG16 (ENSANAG00000021194)	IKZF2 (ENSANAG00000020083) #24	ERBB4 (ENSANAG00000034026) #26	CPS1 (ENSANAG00000036815) #27	ENSANAG00000036535	ENSANAG00000033281 #28	MYL1 (ENSANAG00000032098) #29	ACADL (ENSANAG00000034362) #31	KANSL1L (ENSANAG00000028662) #32	ENSANAG00000021491 #33	UNC80 (ENSANAG00000022890) #34	MAP2 (ENSANAG00000031569) #35	ENSANAG00000036032
Tarsier	MODERN SPECIES	879																ENSTSYG00000006130 #22
Euarchontoglires_A	ANCESTRAL SPECIES	13	ENSGT00940000155400.B	ENSGT00390000000539 #7	ENSGT00940000155890 #8	ENSGT00940000158542 #9	ENSGT00390000016988.a.b ##11	ENSGT00940000157608 #12	ENSGT00940000158179 #13	ENSGT00940000153239.A #14	ENSGT00390000015276 #16	ENSGT00940000156882 #17	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00940000168433	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00390000002231.d.b	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447 #33	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000159094 #37	ENSGT00940000156307.b
Tree shrew	MODERN SPECIES	1847																BARD1 (ENSTBEG00000015473) #22
Glires	ANCESTRAL SPECIES	14	ENSGT00940000155400.B	ENSGT00390000000539 #7	ENSGT00940000155890 #8	ENSGT00940000158542 #9	ENSGT00390000016988.a.b ##11	ENSGT00940000157608 #12	ENSGT00940000158179 #13	ENSGT00940000153239.A #14	ENSGT00390000015276 #16	ENSGT00940000156882 #17	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00940000168433	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00390000002231.d.b	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447 #33	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000159094 #37	ENSGT00940000156307.b
Lagomorpha	ANCESTRAL SPECIES	13	ENSGT01050000244848.A.a.g.a	ENSGT00940000154044.a.b	ENSGT00940000155400.B	ENSGT00940000155890 #8	ENSGT00940000158542 #9	ENSGT00390000016988.a.b ##11	ENSGT00940000157608 #12	ENSGT00940000158179 #13	ENSGT00940000153239.A #14	ENSGT00390000015276 #16	ENSGT00940000156882 #17	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00390000002231.d.b	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00530000063186.b.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447 #33	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000158720.c.b #36	ENSGT00940000156307.b
Rabbit	MODERN SPECIES	18	ENSOCUG00000008561 #9	ENSOCUG00000035553 ##11	ENSOCUG00000039089	SMARCAL1 (ENSOCUG00000009891) #12	MARCHF4 (ENSOCUG00000025107) #13	XRCC5 (ENSOCUG00000006642) #14	TMEM169 (ENSOCUG00000004684) #16	PECR (ENSOCUG00000006636) #17	MREG (ENSOCUG00000006632) #18	ENSOCUG00000031308	ENSOCUG00000037486	ENSOCUG00000031511	FN1 (ENSOCUG00000010104) #19	ATIC (ENSOCUG00000001121) #20	ABCA12 (ENSOCUG00000017926) #21	BARD1 (ENSOCUG00000001552) #22	VWC2L (ENSOCUG00000014302) #23	ENSOCUG00000032906	SPAG16 (ENSOCUG00000014285)	ENSOCUG00000037270	IKZF2 (ENSOCUG00000007309) #24	ENSOCUG00000034291	ENSOCUG00000036328	ERBB4 (ENSOCUG00000009790) #26	ENSOCUG00000021317	ENSOCUG00000034876	CPS1 (ENSOCUG00000017716) #27	LANCL1 (ENSOCUG00000017711) #28	MYL1 (ENSOCUG00000014182) #29	KANSL1L (ENSOCUG00000017001) #32	ENSOCUG00000016995 #33
Pika	MODERN SPECIES	1563															ABCA12 (ENSOPRG00000009094) #21	BARD1 (ENSOPRG00000009077) #22
Rodentia	ANCESTRAL SPECIES	14	ENSGT00940000155400.B	ENSGT00390000000539 #7	ENSGT00940000155890 #8	ENSGT00940000158542 #9	ENSGT00390000016988.a.b ##11	ENSGT00940000157608 #12	ENSGT00940000158179 #13	ENSGT00940000153239.A #14	ENSGT00390000015276 #16	ENSGT00940000156882 #17	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00940000168433	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00390000002231.d.b	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447 #33	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000163272.a.a	ENSGT00940000159094 #37
Rodentia_A	ANCESTRAL SPECIES	13	ENSGT00940000154044.a.b	ENSGT00940000155400.B	ENSGT00390000000539 #7	ENSGT00940000155890 #8	ENSGT00940000158542 #9	ENSGT00390000016988.a.b ##11	ENSGT00940000157608 #12	ENSGT00940000158179 #13	ENSGT00940000153239.A #14	ENSGT00390000015276 #16	ENSGT00940000156882 #17	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447 #33	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000163272.a.a	ENSGT00940000159094 #37	ENSGT00940000156307.b
Hystricomorpha	ANCESTRAL SPECIES	28	ENSGT00940000154044.a.b	ENSGT00940000155400.B	ENSGT00390000000539 #7	ENSGT00940000155890 #8	ENSGT00940000158542 #9	ENSGT00390000016988.a.b ##11	ENSGT00940000157608 #12	ENSGT00940000158179 #13	ENSGT00940000153239.A #14	ENSGT00390000015276 #16	ENSGT00940000156882 #17	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447 #33	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000159094 #37	ENSGT00940000156307.b	ENSGT00390000012547.b.c
Hystricomorpha_a	ANCESTRAL SPECIES	67												ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447 #33	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000159094 #37	ENSGT00940000156307.b	ENSGT00390000012547.b.d
Guinea pig	MODERN SPECIES	13												MREG (ENSCPOG00000038481) #18	FN1 (ENSCPOG00000012808) #19	ATIC (ENSCPOG00000012802) #20	ABCA12 (ENSCPOG00000005978) #21	BARD1 (ENSCPOG00000011499) #22	VWC2L (ENSCPOG00000013515) #23	IKZF2 (ENSCPOG00000013506) #24	ERBB4 (ENSCPOG00000011232) #26	ENSCPOG00000035740	CPS1 (ENSCPOG00000004146) #27	LANCL1 (ENSCPOG00000009439) #28	MYL1 (ENSCPOG00000009446) #29	ACADL (ENSCPOG00000009871) #31	KANSL1L (ENSCPOG00000001503) #32	ENSCPOG00000001502 #33	UNC80 (ENSCPOG00000008641) #34	ENSCPOG00000040677 #35	PTH2R (ENSCPOG00000027198) #37	PIKFYVE (ENSCPOG00000003863)	IDH1 (ENSCPOG00000013587)
Hystricomorpha_b	ANCESTRAL SPECIES	52												ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447 #33	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000159094 #37	ENSGT00940000156307.b	ENSGT00390000012547.b.d
Degu	MODERN SPECIES	57										ENSODEG00000007346 #18	ENSODEG00000007771	ENSODEG00000007722	FN1 (ENSODEG00000008281) #19	ENSODEG00000008301 #20	ABCA12 (ENSODEG00000012235) #21	ENSODEG00000008221 #22	ENSODEG00000009279	VWC2L (ENSODEG00000008549) #23	ENSODEG00000007901	ENSODEG00000008353	ENSODEG00000008509	IKZF2 (ENSODEG00000008010) #24	ERBB4 (ENSODEG00000009033) #26	ENSODEG00000013776	ENSODEG00000008980	CPS1 (ENSODEG00000007917) #27	ENSODEG00000008576	LANCL1 (ENSODEG00000013138) #28	MYL1 (ENSODEG00000007814) #29	ACADL (ENSODEG00000008088) #31	KANSL1L (ENSODEG00000008832) #32
Long-tailed chinchilla	MODERN SPECIES	164												MREG (ENSCLAG00000005783) #18	FN1 (ENSCLAG00000004804) #19	ATIC (ENSCLAG00000008276) #20	ABCA12 (ENSCLAG00000006672) #21	BARD1 (ENSCLAG00000007649) #22	VWC2L (ENSCLAG00000004321) #23	ENSCLAG00000004744	IKZF2 (ENSCLAG00000003632) #24	ERBB4 (ENSCLAG00000006948) #26	CPS1 (ENSCLAG00000003104) #27	LANCL1 (ENSCLAG00000005272) #28	MYL1 (ENSCLAG00000004096) #29	ACADL (ENSCLAG00000004230) #31	KANSL1L (ENSCLAG00000005749) #32	ENSCLAG00000003444 #33	UNC80 (ENSCLAG00000004587) #34	MAP2 (ENSCLAG00000003473) #35	ENSCLAG00000003083	PTH2R (ENSCLAG00000003358) #37	PIKFYVE (ENSCLAG00000005225)
Naked mole-rat female	MODERN SPECIES	17	MARCHF4 (ENSHGLG00000016985) #13	XRCC5 (ENSHGLG00000015924) #14	ENSHGLG00000016206 #17	TMEM169 (ENSHGLG00000043207) #16	ENSHGLG00000038070	ENSHGLG00000032001	ENSHGLG00000041086	ENSHGLG00000045074	MREG (ENSHGLG00000040698) #18	FN1 (ENSHGLG00000004089) #19	ATIC (ENSHGLG00000004192) #20	ENSHGLG00000004264	ENSHGLG00000004335	ABCA12 (ENSHGLG00000004765) #21	ENSHGLG00000049209	BARD1 (ENSHGLG00000048952) #22	VWC2L (ENSHGLG00000006216) #23	ENSHGLG00000045998	ENSHGLG00000007634	ENSHGLG00000032302	IKZF2 (ENSHGLG00000015317) #24	ENSHGLG00000042334	ENSHGLG00000049981	ENSHGLG00000036818	ERBB4 (ENSHGLG00000015379) #26	ENSHGLG00000039921	CPS1 (ENSHGLG00000017911) #27	LANCL1 (ENSHGLG00000036257) #28	MYL1 (ENSHGLG00000048085) #29	ENSHGLG00000004628 #31	KANSL1L (ENSHGLG00000005747) #32
Sciuridae	ANCESTRAL SPECIES	10	ENSGT00940000154044.a.b	ENSGT00940000155400.B	ENSGT00390000000539 #7	ENSGT00940000155890 #8	ENSGT00940000158542 #9	ENSGT00390000016988.a.b ##11	ENSGT00940000157608 #12	ENSGT00940000158179 #13	ENSGT00940000153239.A #14	ENSGT00390000015276 #16	ENSGT00940000156882 #17	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447 #33	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000163272.a.a	ENSGT00940000159094 #37	ENSGT00940000156307.b
Marmotini	ANCESTRAL SPECIES	2	ENSGT00940000154044.a.b	ENSGT00940000155400.B	ENSGT00390000000539 #7	ENSGT00940000155890 #8	ENSGT00940000158542 #9	ENSGT00390000016988.a.b ##11	ENSGT00940000157608 #12	ENSGT00940000158179 #13	ENSGT00940000153239.A #14	ENSGT00390000015276 #16	ENSGT00940000156882 #17	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447 #33	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000163272.a.a	ENSGT00940000159094 #37	ENSGT00940000156307.b
Marmotini_b	ANCESTRAL SPECIES	167			ENSGT00390000000539 #7	ENSGT00940000155890 #8	ENSGT00940000158542 #9	ENSGT00390000016988.a.b ##11	ENSGT00940000157608 #12	ENSGT00940000158179 #13	ENSGT00940000153239.A #14	ENSGT00390000015276 #16	ENSGT00940000156882 #17	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447 #33	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000163272.a.a
Squirrel	MODERN SPECIES	186			TNP1 (ENSSTOG00000024911) #7	IGFBP5 (ENSSTOG00000029182) #8	IGFBP2 (ENSSTOG00000011217) #9	RPL37A (ENSSTOG00000030968) ##11	SMARCAL1 (ENSSTOG00000015621) #12	MARCHF4 (ENSSTOG00000033181) #13	XRCC5 (ENSSTOG00000006478) #14	TMEM169 (ENSSTOG00000006471) #16	PECR (ENSSTOG00000013870) #17	MREG (ENSSTOG00000009936) #18	FN1 (ENSSTOG00000002709) #19	ATIC (ENSSTOG00000002687) #20	ABCA12 (ENSSTOG00000022176) #21	BARD1 (ENSSTOG00000002413) #22	VWC2L (ENSSTOG00000011936) #23	ENSSTOG00000029346	ENSSTOG00000011925	IKZF2 (ENSSTOG00000011683) #24	ERBB4 (ENSSTOG00000000187) #26	CPS1 (ENSSTOG00000000128) #27	LANCL1 (ENSSTOG00000022397) #28	MYL1 (ENSSTOG00000003469) #29
Arctic ground squirrel	MODERN SPECIES	265				RPL37A (ENSUPAG00010005317) ##11	SMARCAL1 (ENSUPAG00010005292) #12	ENSUPAG00010005289	MARCHF4 (ENSUPAG00010005287) #13	XRCC5 (ENSUPAG00010005275) #14	TMEM169 (ENSUPAG00010005270) #16	PECR (ENSUPAG00010005257) #17	MREG (ENSUPAG00010005248) #18	FN1 (ENSUPAG00010004397) #19	ATIC (ENSUPAG00010004349) #20	ABCA12 (ENSUPAG00010004294) #21	ENSUPAG00010004290	BARD1 (ENSUPAG00010004260) #22	VWC2L (ENSUPAG00010004248) #23	ENSUPAG00010004229
Alpin marmot	MODERN SPECIES	8	TNS1 (ENSMMMG00000018087)	TNP1 (ENSMMMG00000018045) #7	IGFBP5 (ENSMMMG00000018026) #8	IGFBP2 (ENSMMMG00000018011) #9	ENSMMMG00000017973	RPL37A (ENSMMMG00000017968) ##11	SMARCAL1 (ENSMMMG00000017898) #12	MARCHF4 (ENSMMMG00000017890) #13	XRCC5 (ENSMMMG00000017867) #14	TMEM169 (ENSMMMG00000017863) #16	PECR (ENSMMMG00000017844) #17	MREG (ENSMMMG00000017833) #18	FN1 (ENSMMMG00000016529) #19	ATIC (ENSMMMG00000016514) #20	ABCA12 (ENSMMMG00000016481) #21	BARD1 (ENSMMMG00000016460) #22	VWC2L (ENSMMMG00000016430) #23	ENSMMMG00000016401	IKZF2 (ENSMMMG00000016182) #24	ENSMMMG00000016161	ENSMMMG00000016149	ENSMMMG00000016133 #26	CPS1 (ENSMMMG00000016097) #27	LANCL1 (ENSMMMG00000016069) #28	MYL1 (ENSMMMG00000016062) #29	ACADL (ENSMMMG00000015744) #31	KANSL1L (ENSMMMG00000015671) #32	ENSMMMG00000015656 #33	UNC80 (ENSMMMG00000015490) #34	MAP2 (ENSMMMG00000015268) #35	ENSMMMG00000015249
Eurasian red squirrel	MODERN SPECIES	12	CXCR2 (ENSSVLG00005010719)	RUFY4 (ENSSVLG00005009621)	TNS1 (ENSSVLG00005009290)	TNP1 (ENSSVLG00005009189) #7	IGFBP5 (ENSSVLG00005009167) #8	IGFBP2 (ENSSVLG00005009134) #9	ENSSVLG00005008994 #11	MARCHF4 (ENSSVLG00005008624) #13	XRCC5 (ENSSVLG00005008576) #14	TMEM169 (ENSSVLG00005008550) #16	PECR (ENSSVLG00005008529) #17	MREG (ENSSVLG00005008491) #18	FN1 (ENSSVLG00005008290) #19	ATIC (ENSSVLG00005008052) #20	ABCA12 (ENSSVLG00005007547) #21	BARD1 (ENSSVLG00005007225) #22	VWC2L (ENSSVLG00005007108) #23	SPAG16 (ENSSVLG00005007010)	ENSSVLG00005006962	IKZF2 (ENSSVLG00005006796) #24	ENSSVLG00005006732	ENSSVLG00005006704	ERBB4 (ENSSVLG00005006250) #26	CPS1 (ENSSVLG00005005630) #27	ENSSVLG00005005520 #28	MYL1 (ENSSVLG00005005436) #29	ENSSVLG00005005403	HNRNPA2B1 (ENSSVLG00005005387)	ACADL (ENSSVLG00005005352) #31	KANSL1L (ENSSVLG00005005286) #32	ENSSVLG00005005150 #33
Rodentia_B	ANCESTRAL SPECIES	12	ENSGT00940000155400.B	ENSGT00390000000539 #7	ENSGT00940000155890 #8	ENSGT00940000158542 #9	ENSGT00390000016988.a.b ##11	ENSGT00940000157608 #12	ENSGT00940000158179 #13	ENSGT00940000153239.A #14	ENSGT00390000015276 #16	ENSGT00940000156882 #17	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00940000168433	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00390000002231.d.b	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447 #33	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000159094 #37	ENSGT00940000156307.b
Myomorpha	ANCESTRAL SPECIES	10	ENSGT00940000155400.B	ENSGT00390000000539 #7	ENSGT00940000155890 #8	ENSGT00940000158542 #9	ENSGT00390000016988.a.b ##11	ENSGT00940000157608 #12	ENSGT00940000158179 #13	ENSGT00940000153239.A #14	ENSGT00390000015276 #16	ENSGT00940000156882 #17	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00940000168433	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00390000002231.d.b	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447 #33	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000159094 #37	ENSGT00940000156307.b
Muroidea	ANCESTRAL SPECIES	20	ENSGT00940000155400.B	ENSGT00390000000539 #7	ENSGT00940000155890 #8	ENSGT00940000158542 #9	ENSGT00390000016988.a.b ##11	ENSGT00940000157608 #12	ENSGT00940000158179 #13	ENSGT00940000153239.A #14	ENSGT00390000015276 #16	ENSGT00940000156882 #17	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00940000168433	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00390000002231.d.b	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447 #33	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000159094 #37	ENSGT00940000156307.b
Muroidea_A	ANCESTRAL SPECIES	19	ENSGT00940000154044.a.b	ENSGT00940000155400.B	ENSGT00390000000539 #7	ENSGT00940000155890 #8	ENSGT00940000158542 #9	ENSGT00390000016988.a.b ##11	ENSGT00940000157608 #12	ENSGT00940000158179 #13	ENSGT00940000153239.A #14	ENSGT00390000015276 #16	ENSGT00940000156882 #17	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00390000002231.d.b	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447 #33	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000159094 #37	ENSGT00940000156307.b
Cricetidae	ANCESTRAL SPECIES	19	ENSGT00940000154044.a.b	ENSGT00940000155400.B	ENSGT00390000000539 #7	ENSGT00940000155890 #8	ENSGT00940000158542 #9	ENSGT00390000016988.a.b ##11	ENSGT00940000157608 #12	ENSGT00940000158179 #13	ENSGT00940000153239.A #14	ENSGT00390000015276 #16	ENSGT00940000156882 #17	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00390000002231.d.b	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447 #33	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000159094 #37	ENSGT00940000156307.b
Cricetinae	ANCESTRAL SPECIES	3	ENSGT00940000154044.a.b	ENSGT00940000155400.B	ENSGT00390000000539 #7	ENSGT00940000155890 #8	ENSGT00940000158542 #9	ENSGT00390000016988.a.b ##11	ENSGT00940000157608 #12	ENSGT00940000158179 #13	ENSGT00940000153239.A #14	ENSGT00390000015276 #16	ENSGT00940000156882 #17	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447 #33	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000159094 #37	ENSGT00940000156307.b	ENSGT00390000012547.b
Chinese hamster chok1gshd	MODERN SPECIES	1	Rufy4 (ENSCGRG00001019715)	Tns1 (ENSCGRG00001019432)	Tnp1 (ENSCGRG00001024576) #7	Igfbp5 (ENSCGRG00001021151) #8	Igfbp2 (ENSCGRG00001020105) #9	Rpl37a (ENSCGRG00001018703) ##11	Smarcal1 (ENSCGRG00001024685) #12	Marchf4 (ENSCGRG00001020474) #13	Xrcc5 (ENSCGRG00001022536) #14	Tmem169 (ENSCGRG00001022364) #16	Pecr (ENSCGRG00001020645) #17	Mreg (ENSCGRG00001019227) #18	Fn1 (ENSCGRG00001023892) #19	Atic (ENSCGRG00001019907) #20	Abca12 (ENSCGRG00001018994) #21	Bard1 (ENSCGRG00001019211) #22	Vwc2l (ENSCGRG00001022705) #23	ENSCGRG00001018870	Ikzf2 (ENSCGRG00001020531) #24	Erbb4 (ENSCGRG00001023006) #26	Cps1 (ENSCGRG00001019583) #27	Lancl1 (ENSCGRG00001018654) #28	Myl1 (ENSCGRG00001018385) #29	Acadl (ENSCGRG00001020753) #31	Kansl1l (ENSCGRG00001021527) #32	Rpe (ENSCGRG00001018221) #33	Unc80 (ENSCGRG00001024763) #34	Map2 (ENSCGRG00001019179) #35	ENSCGRG00001017914	Pth2r (ENSCGRG00001020290) #37	Pikfyve (ENSCGRG00001019851)
Golden Hamster	MODERN SPECIES	640	Rufy4 (ENSMAUG00000011433)	ENSMAUG00000006666	Tns1 (ENSMAUG00000019800)	Tnp1 (ENSMAUG00000021536) #7	Igfbp5 (ENSMAUG00000001698) #8	Igfbp2 (ENSMAUG00000016997) #9	Rpl37a (ENSMAUG00000020042) ##11	Smarcal1 (ENSMAUG00000021316) #12	Marchf4 (ENSMAUG00000014893) #13	Xrcc5 (ENSMAUG00000006680) #14	Tmem169 (ENSMAUG00000014332) #16	Pecr (ENSMAUG00000009535) #17	Fn1 (ENSMAUG00000001872) #19	Atic (ENSMAUG00000013188) #20	Abca12 (ENSMAUG00000011442) #21	Bard1 (ENSMAUG00000005663) #22	ENSMAUG00000009590	Vwc2l (ENSMAUG00000009036) #23	ENSMAUG00000010536	Ikzf2 (ENSMAUG00000017775) #24	Erbb4 (ENSMAUG00000021336) #26	Cps1 (ENSMAUG00000010923) #27	Lancl1 (ENSMAUG00000013753) #28	Myl1 (ENSMAUG00000018186) #29	Acadl (ENSMAUG00000018703) #31	Kansl1l (ENSMAUG00000013611) #32	Rpe (ENSMAUG00000011547) #33	ENSMAUG00000009679	ENSMAUG00000019100 #34	Map2 (ENSMAUG00000012012) #35	ENSMAUG00000015143
Cricetidae_B	ANCESTRAL SPECIES	20	ENSGT00940000154044.a.b	ENSGT00940000155400.B	ENSGT00390000000539 #7	ENSGT00940000155890 #8	ENSGT00940000158542 #9	ENSGT00390000016988.a.b ##11	ENSGT00940000157608 #12	ENSGT00940000158179 #13	ENSGT00940000153239.A #14	ENSGT00390000015276 #16	ENSGT00940000156882 #17	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00390000002231.d.b	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447 #33	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000159094 #37	ENSGT00940000156307.b
Prairie vole	MODERN SPECIES	354	Agxt (ENSMOCG00000002293)	Kif1a (ENSMOCG00000003062)	Aqp12 (ENSMOCG00000005420)	Capn10 (ENSMOCG00000016869)	Rnpepl1 (ENSMOCG00000001687)	Dusp28 (ENSMOCG00000020145)	Ankmy1 (ENSMOCG00000001016)	Gpc1 (ENSMOCG00000000952)	Otos (ENSMOCG00000009370)	ENSMOCG00000010518	ENSMOCG00000020221	Fn1 (ENSMOCG00000022262) #19	Atic (ENSMOCG00000015771) #20	ENSMOCG00000003338	Abca12 (ENSMOCG00000014923) #21	Bard1 (ENSMOCG00000017289) #22	Vwc2l (ENSMOCG00000007279) #23	Spag16 (ENSMOCG00000017743)	ENSMOCG00000000249	Ikzf2 (ENSMOCG00000011868) #24	Erbb4 (ENSMOCG00000016854) #26	Cps1 (ENSMOCG00000009767) #27	Lancl1 (ENSMOCG00000017471) #28	Myl1 (ENSMOCG00000021319) #29	Acadl (ENSMOCG00000022401) #31	Kansl1l (ENSMOCG00000020578) #32	Rpe (ENSMOCG00000013941) #33	Unc80 (ENSMOCG00000014746) #34	ENSMOCG00000006121	ENSMOCG00000017798 #35	ENSMOCG00000022246
Northern American deer mouse	MODERN SPECIES	4	Rufy4 (ENSPEMG00000022881)	Tns1 (ENSPEMG00000017420)	Tnp1 (ENSPEMG00000013633) #7	Igfbp5 (ENSPEMG00000024920) #8	Igfbp2 (ENSPEMG00000018165) #9	Rpl37a (ENSPEMG00000008580) ##11	Smarcal1 (ENSPEMG00000013063) #12	Marchf4 (ENSPEMG00000005987) #13	Xrcc5 (ENSPEMG00000012102) #14	Tmem169 (ENSPEMG00000026340) #16	Pecr (ENSPEMG00000007409) #17	Mreg (ENSPEMG00000007185) #18	Fn1 (ENSPEMG00000018184) #19	Atic (ENSPEMG00000014807) #20	Abca12 (ENSPEMG00000016577) #21	Bard1 (ENSPEMG00000009105) #22	Vwc2l (ENSPEMG00000018139) #23	ENSPEMG00000018844	Ikzf2 (ENSPEMG00000011886) #24	ENSPEMG00000024657	Erbb4 (ENSPEMG00000017090) #26	Cps1 (ENSPEMG00000010458) #27	Lancl1 (ENSPEMG00000020372) #28	Myl1 (ENSPEMG00000016490) #29	Acadl (ENSPEMG00000012977) #31	Kansl1l (ENSPEMG00000000580) #32	Rpe (ENSPEMG00000021162) #33	Unc80 (ENSPEMG00000020306) #34	Map2 (ENSPEMG00000020588) #35	ENSPEMG00000024512	ENSPEMG00000024519
Murinae	ANCESTRAL SPECIES	9	ENSGT00940000155400.B	ENSGT00390000000539 #7	ENSGT00940000155890 #8	ENSGT00940000158542 #9	ENSGT00390000016988.a.b ##11	ENSGT00940000157608 #12	ENSGT00940000158179 #13	ENSGT00940000153239.A #14	ENSGT00390000015276 #16	ENSGT00940000156882 #17	ENSGT00390000008926 #18	ENSGT01050000247708	ENSGT00940000155126 #19	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00390000002231.d.b	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447 #33	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000163272.a.a	ENSGT00940000159094 #37
Mus	ANCESTRAL SPECIES	5	ENSGT00390000000539 #7	ENSGT00940000155890 #8	ENSGT00940000158542 #9	ENSGT00390000016988.a.b ##11	ENSGT00680000100065	ENSGT00940000157608 #12	ENSGT00940000158179 #13	ENSGT00940000153239.A #14	ENSGT00390000015276 #16	ENSGT00940000156882 #17	ENSGT00390000008926 #18	ENSGT01050000247708	ENSGT00940000155126 #19	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00390000002231.d.b	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447 #33	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000163272.a.a.i	ENSGT00940000159094 #37
Mus_A	ANCESTRAL SPECIES	5	ENSGT00390000000539 #7	ENSGT00940000155890 #8	ENSGT00940000158542 #9	ENSGT00390000016988.a.b ##11	ENSGT00680000100065	ENSGT00940000157608 #12	ENSGT00940000158179 #13	ENSGT00940000153239.A #14	ENSGT00390000015276 #16	ENSGT00940000156882 #17	ENSGT00390000008926 #18	ENSGT01050000247708	ENSGT00940000155126 #19	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00390000002231.d.b	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447 #33	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000163272.a.a.i	ENSGT00940000159094 #37
Mus_B	ANCESTRAL SPECIES	7	ENSGT00390000000539 #7	ENSGT00940000155890 #8	ENSGT00940000158542 #9	ENSGT00390000016988.a.b ##11	ENSGT00680000100065	ENSGT00940000157608 #12	ENSGT00940000158179 #13	ENSGT00940000153239.A #14	ENSGT00390000015276 #16	ENSGT00940000156882 #17	ENSGT00390000008926 #18	ENSGT01050000247708	ENSGT00940000155126 #19	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00390000002231.d.b	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447 #33	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000163272.a.a.i	ENSGT00940000159094 #37
Mouse	MODERN SPECIES		Tns1 (ENSMUSG00000055322)	Tnp1 (ENSMUSG00000026182) #7	Igfbp5 (ENSMUSG00000026185) #8	Igfbp2 (ENSMUSG00000039323) #9	Rpl37a (ENSMUSG00000046330) ##11	Ankar (ENSMUSG00000039342)	Smarcal1 (ENSMUSG00000039354) #12	Marchf4 (ENSMUSG00000039372) #13	Xrcc5 (ENSMUSG00000026187) #14	Tmem169 (ENSMUSG00000026188) #16	Pecr (ENSMUSG00000026189) #17	Mreg (ENSMUSG00000039395) #18	Fn1 (ENSMUSG00000026193) #19	Atic (ENSMUSG00000026192) #20	Abca12 (ENSMUSG00000050296) #21	Bard1 (ENSMUSG00000026196) #22	Vwc2l (ENSMUSG00000045648) #23	Spag16 (ENSMUSG00000053153)	Ikzf2 (ENSMUSG00000025997) #24	Erbb4 (ENSMUSG00000062209) #26	Cps1 (ENSMUSG00000025991) #27	Lancl1 (ENSMUSG00000026000) #28	Myl1 (ENSMUSG00000061816) #29	Acadl (ENSMUSG00000026003) #31	Kansl1l (ENSMUSG00000026004) #32	Rpe (ENSMUSG00000026005) #33	Unc80 (ENSMUSG00000055567) #34	Map2 (ENSMUSG00000015222) #35	Crygf (ENSMUSG00000025945)	Pth2r (ENSMUSG00000025946) #37	Pikfyve (ENSMUSG00000025949)
Mus_C	ANCESTRAL SPECIES	1	ENSGT00940000155400.B	ENSGT00390000000539 #7	ENSGT00940000155890 #8	ENSGT00940000158542 #9	ENSGT00390000016988.a.b ##11	ENSGT00940000157608 #12	ENSGT00940000158179 #13	ENSGT00940000153239.A #14	ENSGT00390000015276 #16	ENSGT00940000156882 #17	ENSGT00390000008926 #18	ENSGT01050000247708	ENSGT00940000155126 #19	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00390000002231.d.b	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447 #33	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000163272.a.a.i	ENSGT00940000159094 #37
spretus	MODERN SPECIES		Rufy4 (MGP_SPRETEiJ_G0015058)	Tns1 (MGP_SPRETEiJ_G0015057)	Tnp1 (MGP_SPRETEiJ_G0015056) #7	Igfbp5 (MGP_SPRETEiJ_G0015055) #8	Igfbp2 (MGP_SPRETEiJ_G0015054) #9	Rpl37a (MGP_SPRETEiJ_G0015053) ##11	Smarcal1 (MGP_SPRETEiJ_G0015052) #12	Marchf4 (MGP_SPRETEiJ_G0015051) #13	Xrcc5 (MGP_SPRETEiJ_G0015050) #14	Tmem169 (MGP_SPRETEiJ_G0015049) #16	Pecr (MGP_SPRETEiJ_G0015048) #17	Mreg (MGP_SPRETEiJ_G0015047) #18	Fn1 (MGP_SPRETEiJ_G0015046) #19	Atic (MGP_SPRETEiJ_G0015045) #20	Abca12 (MGP_SPRETEiJ_G0015044) #21	Bard1 (MGP_SPRETEiJ_G0015043) #22	Vwc2l (MGP_SPRETEiJ_G0015042) #23	Spag16 (MGP_SPRETEiJ_G0015041)	Ikzf2 (MGP_SPRETEiJ_G0015040) #24	Erbb4 (MGP_SPRETEiJ_G0015039) #26	Cps1 (MGP_SPRETEiJ_G0015038) #27	Lancl1 (MGP_SPRETEiJ_G0015037) #28	Myl1 (MGP_SPRETEiJ_G0015036) #29	Acadl (MGP_SPRETEiJ_G0015035) #31	Kansl1l (MGP_SPRETEiJ_G0015034) #32	Rpe (MGP_SPRETEiJ_G0015033) #33	Unc80 (MGP_SPRETEiJ_G0015032) #34	Map2 (MGP_SPRETEiJ_G0015031) #35	Crygf (MGP_SPRETEiJ_G0015030)	Pth2r (MGP_SPRETEiJ_G0015029) #37	Pikfyve (MGP_SPRETEiJ_G0015028)
Steppe mouse	MODERN SPECIES	2739															Abca12 (ENSMSIG00000032128) #21	Bard1 (ENSMSIG00000032127) #22	ENSMSIG00000032126	Vwc2l (ENSMSIG00000032125) #23
Ryukyu mouse	MODERN SPECIES		Tns1 (MGP_CAROLIEiJ_G0014251)	Tnp1 (MGP_CAROLIEiJ_G0014250) #7	Igfbp5 (MGP_CAROLIEiJ_G0014249) #8	Igfbp2 (MGP_CAROLIEiJ_G0014248) #9	Rpl37a (MGP_CAROLIEiJ_G0014247) ##11	Ankar (MGP_CAROLIEiJ_G0014246)	Smarcal1 (MGP_CAROLIEiJ_G0014245) #12	Marchf4 (MGP_CAROLIEiJ_G0014244) #13	Xrcc5 (MGP_CAROLIEiJ_G0014243) #14	Tmem169 (MGP_CAROLIEiJ_G0014242) #16	Pecr (MGP_CAROLIEiJ_G0014241) #17	Mreg (MGP_CAROLIEiJ_G0014240) #18	Fn1 (MGP_CAROLIEiJ_G0014239) #19	Atic (MGP_CAROLIEiJ_G0014238) #20	Abca12 (MGP_CAROLIEiJ_G0014237) #21	Bard1 (MGP_CAROLIEiJ_G0014236) #22	Vwc2l (MGP_CAROLIEiJ_G0014235) #23	Spag16 (MGP_CAROLIEiJ_G0014234)	Ikzf2 (MGP_CAROLIEiJ_G0014233) #24	Erbb4 (MGP_CAROLIEiJ_G0014232) #26	Cps1 (MGP_CAROLIEiJ_G0014231) #27	Lancl1 (MGP_CAROLIEiJ_G0014230) #28	Myl1 (MGP_CAROLIEiJ_G0014229) #29	Acadl (MGP_CAROLIEiJ_G0014228) #31	Kansl1l (MGP_CAROLIEiJ_G0014227) #32	Rpe (MGP_CAROLIEiJ_G0014226) #33	Unc80 (MGP_CAROLIEiJ_G0014225) #34	Map2 (MGP_CAROLIEiJ_G0014224) #35	Crygf (MGP_CAROLIEiJ_G0014223)	Pth2r (MGP_CAROLIEiJ_G0014222) #37	Pikfyve (MGP_CAROLIEiJ_G0014221)
Shrew mouse	MODERN SPECIES	18	Tns1 (MGP_PahariEiJ_G0027489)	Tnp1 (MGP_PahariEiJ_G0027488) #7	Igfbp5 (MGP_PahariEiJ_G0027487) #8	Igfbp2 (MGP_PahariEiJ_G0027486) #9	Rpl37a (MGP_PahariEiJ_G0027485) ##11	Ankar (MGP_PahariEiJ_G0027484)	Smarcal1 (MGP_PahariEiJ_G0027483) #12	Marchf4 (MGP_PahariEiJ_G0027482) #13	Xrcc5 (MGP_PahariEiJ_G0027481) #14	Tmem169 (MGP_PahariEiJ_G0027480) #16	Pecr (MGP_PahariEiJ_G0027479) #17	Mreg (MGP_PahariEiJ_G0027478) #18	Fn1 (MGP_PahariEiJ_G0027477) #19	Atic (MGP_PahariEiJ_G0027476) #20	Abca12 (MGP_PahariEiJ_G0027475) #21	Bard1 (MGP_PahariEiJ_G0027474) #22	Vwc2l (MGP_PahariEiJ_G0027473) #23	Spag16 (MGP_PahariEiJ_G0027472)	Ikzf2 (MGP_PahariEiJ_G0027471) #24	Erbb4 (MGP_PahariEiJ_G0027470) #26	Cps1 (MGP_PahariEiJ_G0027469) #27	Lancl1 (MGP_PahariEiJ_G0027468) #28	Myl1 (MGP_PahariEiJ_G0027467) #29	Acadl (MGP_PahariEiJ_G0027466) #31	Kansl1l (MGP_PahariEiJ_G0027465) #32	Rpe (MGP_PahariEiJ_G0027464) #33	Unc80 (MGP_PahariEiJ_G0027463) #34	Map2 (MGP_PahariEiJ_G0027462) #35	MGP_PahariEiJ_G0027461	MGP_PahariEiJ_G0027460 #37	Pikfyve (MGP_PahariEiJ_G0027459)
Rat	MODERN SPECIES	19	Tnp1 (ENSRNOG00000017611) #7	Igfbp5 (ENSRNOG00000017206) #8	Igfbp2 (ENSRNOG00000016957) #9	ENSRNOG00000063418 #11	Smarcal1 (ENSRNOG00000016503) #12	ENSRNOG00000063848	Marchf4 (ENSRNOG00000016472) #13	Xrcc5 (ENSRNOG00000016105) #14	Tmem169 (ENSRNOG00000016091) #16	Pecr (ENSRNOG00000055295) #17	Mreg (ENSRNOG00000015774) #18	AABR07068042.1 (ENSRNOG00000037894)	Fn1 (ENSRNOG00000014288) #19	Atic (ENSRNOG00000015511) #20	Abca12 (ENSRNOG00000015248) #21	Bard1 (ENSRNOG00000014960) #22	Vwc2l (ENSRNOG00000027400) #23	ENSRNOG00000069358	LOC102550841 (ENSRNOG00000054475)	Ikzf2 (ENSRNOG00000027430) #24	RGD1562431 (ENSRNOG00000032306)	Erbb4 (ENSRNOG00000014248) #26	Cps1 (ENSRNOG00000013704) #27	Lancl1 (ENSRNOG00000013557) #28	Myl1 (ENSRNOG00000013262) #29	Acadl (ENSRNOG00000012966) #31	Kansl1l (ENSRNOG00000028149) #32	Rpe (ENSRNOG00000038085) #33	Unc80 (ENSRNOG00000028362) #34	Map2 (ENSRNOG00000011841) #35	ENSRNOG00000068845
Upper Galilee mountains blind mole rat	MODERN SPECIES	1887	ENSNGAG00000020111	Igfbp5 (ENSNGAG00000015689) #8	Igfbp2 (ENSNGAG00000014418) #9	Rpl37a (ENSNGAG00000012401) ##11	Smarcal1 (ENSNGAG00000016128) #12	Marchf4 (ENSNGAG00000007981) #13	Xrcc5 (ENSNGAG00000023190) #14	Tmem169 (ENSNGAG00000022271) #16	Pecr (ENSNGAG00000003949) #17	Mreg (ENSNGAG00000002348) #18	ENSNGAG00000011565 #19	ENSNGAG00000024366	Atic (ENSNGAG00000018746) #20	Abca12 (ENSNGAG00000022702) #21	ENSNGAG00000013362	Bard1 (ENSNGAG00000023844) #22	Vwc2l (ENSNGAG00000010373) #23
Lesser Egyptian jerboa	MODERN SPECIES	52							Tmem169 (ENSJJAG00000011204) #16	Pecr (ENSJJAG00000012989) #17	Mreg (ENSJJAG00000000628) #18	ENSJJAG00000022139	ENSJJAG00000013500	ENSJJAG00000016483	Fn1 (ENSJJAG00000021114) #19	Atic (ENSJJAG00000020485) #20	Abca12 (ENSJJAG00000014262) #21	ENSJJAG00000015311 #22	Vwc2l (ENSJJAG00000020624) #23	Spag16 (ENSJJAG00000000768)	Ikzf2 (ENSJJAG00000015254) #24	Erbb4 (ENSJJAG00000021464) #26	ENSJJAG00000013028	ENSJJAG00000008457	Cps1 (ENSJJAG00000023728) #27	Lancl1 (ENSJJAG00000005677) #28	Myl1 (ENSJJAG00000000461) #29	Acadl (ENSJJAG00000021820) #31	Kansl1l (ENSJJAG00000020367) #32	ENSJJAG00000012686 #33	Unc80 (ENSJJAG00000015201) #34	Map2 (ENSJJAG00000014034) #35	Pth2r (ENSJJAG00000009843) #37
Kangaroo rat	MODERN SPECIES	320	Tns1 (ENSDORG00000013017)	ENSDORG00000000281	Igfbp5 (ENSDORG00000008699) #8	Igfbp2 (ENSDORG00000008698) #9	Rpl37a (ENSDORG00000027793) ##11	Smarcal1 (ENSDORG00000013944) #12	Marchf4 (ENSDORG00000002802) #13	Xrcc5 (ENSDORG00000011417) #14	Tmem169 (ENSDORG00000011415) #16	Pecr (ENSDORG00000015456) #17	Mreg (ENSDORG00000008365) #18	ENSDORG00000023313 #19	ENSDORG00000028093	Atic (ENSDORG00000010127) #20	Abca12 (ENSDORG00000005459) #21	ENSDORG00000015439 #22	Vwc2l (ENSDORG00000010438) #23	ENSDORG00000025882	Ikzf2 (ENSDORG00000007539) #24	ENSDORG00000028919	ENSDORG00000023387	Erbb4 (ENSDORG00000013025) #26	Cps1 (ENSDORG00000007835) #27	Lancl1 (ENSDORG00000009233) #28	Myl1 (ENSDORG00000027836) #29	ENSDORG00000024057	Acadl (ENSDORG00000005849) #31	Kansl1l (ENSDORG00000005847) #32	Rpe (ENSDORG00000005846) #33	Unc80 (ENSDORG00000005840) #34	Map2 (ENSDORG00000005837) #35
Laurasiatheria	ANCESTRAL SPECIES	12	ENSGT00940000154044.a.b	ENSGT00940000155400.B	ENSGT00390000000539 #7	ENSGT00940000155890 #8	ENSGT00940000158542 #9	ENSGT00390000016988.a.b ##11	ENSGT00940000157608 #12	ENSGT00940000158179 #13	ENSGT00940000153239.A #14	ENSGT00390000015276 #16	ENSGT00940000156882 #17	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00390000002231.d.b	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447 #33	ENSGT01030000235330	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000159094 #37
Laurasiatheria_a	ANCESTRAL SPECIES	16	ENSGT00940000154044.a.b	ENSGT00940000155400.B	ENSGT00390000000539 #7	ENSGT00940000155890 #8	ENSGT00940000158542 #9	ENSGT00390000016988.a.b ##11	ENSGT00940000157608 #12	ENSGT00940000158179 #13	ENSGT00940000153239.A #14	ENSGT00390000015276 #16	ENSGT00940000156882 #17	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00390000002231.d.b	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447 #33	ENSGT01030000235330	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000159094 #37
Artiodactyla	ANCESTRAL SPECIES	13	ENSGT00940000154044.a.b	ENSGT00940000155400.B	ENSGT00390000000539 #7	ENSGT00940000155890 #8	ENSGT00940000158542 #9	ENSGT00390000016988.a.b ##11	ENSGT00940000157608 #12	ENSGT00940000158179 #13	ENSGT00940000153239.A #14	ENSGT00390000015276 #16	ENSGT00940000156882 #17	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00390000002231.d.b	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447 #33	ENSGT01030000235330	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000159094 #37
Suina	ANCESTRAL SPECIES	3	ENSGT00940000154044.a.b	ENSGT00940000155400.B	ENSGT00390000000539 #7	ENSGT00940000155890 #8	ENSGT00940000158542 #9	ENSGT00390000016988.a.b ##11	ENSGT00940000157608 #12	ENSGT00940000158179 #13	ENSGT00940000153239.A #14	ENSGT00390000015276 #16	ENSGT00940000156882 #17	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00390000002231.d.b	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447 #33	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000158720.c.b #36	ENSGT00940000159094 #37
Chacoan peccary	MODERN SPECIES	940	RUFY4 (ENSCWAG00000005010)	TNS1 (ENSCWAG00000005123)	TNP1 (ENSCWAG00000006457) #7	IGFBP5 (ENSCWAG00000006483) #8	IGFBP2 (ENSCWAG00000006499) #9	RPL37A (ENSCWAG00000006536) ##11	SMARCAL1 (ENSCWAG00000006586) #12	MARCHF4 (ENSCWAG00000006660) #13	XRCC5 (ENSCWAG00000006688) #14	TMEM169 (ENSCWAG00000006756) #16	PECR (ENSCWAG00000006784) #17	MREG (ENSCWAG00000006855) #18	FN1 (ENSCWAG00000006968) #19	ATIC (ENSCWAG00000007355) #20	ABCA12 (ENSCWAG00000007483) #21	BARD1 (ENSCWAG00000008027) #22	VWC2L (ENSCWAG00000010304) #23	SPAG16 (ENSCWAG00000010324)	IKZF2 (ENSCWAG00000010504) #24	ENSCWAG00000010926	ERBB4 (ENSCWAG00000010989) #26	ENSCWAG00000011700	ENSCWAG00000011727	ENSCWAG00000011755	CPS1 (ENSCWAG00000011796) #27	LANCL1 (ENSCWAG00000012920) #28	MYL1 (ENSCWAG00000012965) #29	ACADL (ENSCWAG00000013051) #31	KANSL1L (ENSCWAG00000013105) #32	ENSCWAG00000013228 #33	UNC80 (ENSCWAG00000013389) #34
Pig	MODERN SPECIES	6	RUFY4 (ENSSSCG00000016182)	TNS1 (ENSSSCG00000027669)	TNP1 (ENSSSCG00000016179) #7	IGFBP5 (ENSSSCG00000025924) #8	IGFBP2 (ENSSSCG00000035392) #9	RPL37A (ENSSSCG00000036716) ##11	SMARCAL1 (ENSSSCG00000035501) #12	MARCHF4 (ENSSSCG00000016176) #13	XRCC5 (ENSSSCG00000016177) #14	TMEM169 (ENSSSCG00000057002) #16	PECR (ENSSSCG00000022758) #17	MREG (ENSSSCG00000016175) #18	FN1 (ENSSSCG00000016174) #19	ATIC (ENSSSCG00000016173) #20	ABCA12 (ENSSSCG00000034282) #21	BARD1 (ENSSSCG00000016170) #22	ENSSSCG00000048197	VWC2L (ENSSSCG00000016168) #23	ENSSSCG00000049911	SPAG16 (ENSSSCG00000016166)	IKZF2 (ENSSSCG00000016164) #24	ENSSSCG00000037703	ERBB4 (ENSSSCG00000016160) #26	CPS1 (ENSSSCG00000016159) #27	LANCL1 (ENSSSCG00000016158) #28	MYL1 (ENSSSCG00000016157) #29	ACADL (ENSSSCG00000016156) #31	ENSSSCG00000060126	KANSL1L (ENSSSCG00000022830) #32	ENSSSCG00000032311 #33	UNC80 (ENSSSCG00000016153) #34
Artiodactyla_a	ANCESTRAL SPECIES	13	ENSGT00940000154044.a.b	ENSGT00940000155400.B	ENSGT00390000000539 #7	ENSGT00940000155890 #8	ENSGT00940000158542 #9	ENSGT00390000016988.a.b ##11	ENSGT00940000157608 #12	ENSGT00940000158179 #13	ENSGT00940000153239.A #14	ENSGT00390000015276 #16	ENSGT00940000156882 #17	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00390000002231.d.b	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447 #33	ENSGT01030000235330	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000159094 #37
Artiodactyla_b	ANCESTRAL SPECIES	12	ENSGT00940000154044.a.b	ENSGT00940000155400.B	ENSGT00390000000539 #7	ENSGT00940000155890 #8	ENSGT00940000158542 #9	ENSGT00390000016988.a.b ##11	ENSGT00940000157608 #12	ENSGT00940000158179 #13	ENSGT00940000153239.A #14	ENSGT00390000015276 #16	ENSGT00940000156882 #17	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00390000002231.d.b	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447 #33	ENSGT01030000235330.d	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000159094 #37
Cetacea	ANCESTRAL SPECIES	14	ENSGT00940000154044.a.b	ENSGT00940000155400.B	ENSGT00390000000539 #7	ENSGT00940000155890 #8	ENSGT00940000158542 #9	ENSGT00390000016988.a.b ##11	ENSGT00940000157608 #12	ENSGT00940000158179 #13	ENSGT00940000153239.A #14	ENSGT00390000015276 #16	ENSGT00940000156882 #17	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00390000002231.d.b	ENSGT00940000154695 #26	ENSGT00530000065303.j	ENSGT00940000157192 #27	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447 #33	ENSGT01030000235330.d	ENSGT00640000091496 #34	ENSGT00940000156597.b #35
Odontoceti	ANCESTRAL SPECIES	13	ENSGT00940000154044.a.b	ENSGT00940000155400.B	ENSGT00390000000539 #7	ENSGT00940000155890 #8	ENSGT00940000158542 #9	ENSGT00390000016988.a.b ##11	ENSGT00940000157608 #12	ENSGT00940000158179 #13	ENSGT00940000153239.A #14	ENSGT00390000015276 #16	ENSGT00940000156882 #17	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00390000002231.d.b	ENSGT00940000154695 #26	ENSGT00530000065303.j	ENSGT00940000157192 #27	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447 #33	ENSGT01030000235330.d	ENSGT00640000091496 #34	ENSGT00940000156597.b #35
Odontoceti_a	ANCESTRAL SPECIES	10	ENSGT01050000244848.A.a.h.i	ENSGT00940000154044.a.b	ENSGT00940000155400.B	ENSGT00390000000539 #7	ENSGT00940000155890 #8	ENSGT00940000158542 #9	ENSGT00390000016988.a.b ##11	ENSGT00940000157608 #12	ENSGT00940000158179 #13	ENSGT00940000153239.A #14	ENSGT00390000015276 #16	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00390000002231.d.b	ENSGT00940000154695 #26	ENSGT00530000065303.j	ENSGT00940000157192 #27	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447 #33	ENSGT01030000235330.d	ENSGT00640000091496 #34	ENSGT00940000156597.b #35
Odontoceti_b	ANCESTRAL SPECIES	12	ENSGT01050000244848.A.a.h.i	ENSGT00940000154044.a.b	ENSGT00940000155400.B	ENSGT00390000000539 #7	ENSGT00940000155890 #8	ENSGT00940000158542 #9	ENSGT00390000016988.a.b ##11	ENSGT00940000157608 #12	ENSGT00940000158179 #13	ENSGT00940000153239.A #14	ENSGT00390000015276 #16	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00390000002231.d.b	ENSGT00940000154695 #26	ENSGT00530000065303.j	ENSGT00940000157192 #27	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447.qb #33	ENSGT01030000235330.d	ENSGT00640000091496 #34	ENSGT00940000156597.b #35
Monodontidae	ANCESTRAL SPECIES	10	ENSGT01050000244848.A.a.h.i	ENSGT00940000154044.a.b	ENSGT00940000155400.B	ENSGT00390000000539 #7	ENSGT00940000155890 #8	ENSGT00940000158542 #9	ENSGT00390000016988.a.b ##11	ENSGT00940000157608 #12	ENSGT00940000158179 #13	ENSGT00940000153239.A #14	ENSGT00390000015276 #16	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00940000154695 #26	ENSGT00530000065303.j	ENSGT00940000157192 #27	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447.qb #33	ENSGT01030000235330.d	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000158720.c.b.x #36
Narwhal	MODERN SPECIES	302	ENSMMNG00015006453	RUFY4 (ENSMMNG00015006488)	TNS1 (ENSMMNG00015006588)	TNP1 (ENSMMNG00015006732) #7	IGFBP5 (ENSMMNG00015006747) #8	IGFBP2 (ENSMMNG00015006761) #9	RPL37A (ENSMMNG00015006797) ##11	SMARCAL1 (ENSMMNG00015006849) #12	MARCHF4 (ENSMMNG00015006890) #13	XRCC5 (ENSMMNG00015006904) #14	TMEM169 (ENSMMNG00015006931) #16	MREG (ENSMMNG00015006946) #18	FN1 (ENSMMNG00015007016) #19	ATIC (ENSMMNG00015007140) #20	ABCA12 (ENSMMNG00015007237) #21	BARD1 (ENSMMNG00015007443) #22	VWC2L (ENSMMNG00015007616) #23	SPAG16 (ENSMMNG00015007641)	IKZF2 (ENSMMNG00015007711) #24	ERBB4 (ENSMMNG00015007770) #26	ENSMMNG00015007841	CPS1 (ENSMMNG00015007884) #27	LANCL1 (ENSMMNG00015008039) #28	MYL1 (ENSMMNG00015008068) #29	ENSMMNG00015008099	ACADL (ENSMMNG00015008110) #31	KANSL1L (ENSMMNG00015008134) #32	ENSMMNG00015008179 #33	UNC80 (ENSMMNG00015008270) #34	MAP2 (ENSMMNG00015008438) #35	ENSMMNG00015008487 #36
Beluga whale	MODERN SPECIES	84	CXCR2 (ENSDLEG00000011899)	RUFY4 (ENSDLEG00000011866)	TNS1 (ENSDLEG00000011725)	TNP1 (ENSDLEG00000011700) #7	IGFBP5 (ENSDLEG00000011691) #8	IGFBP2 (ENSDLEG00000011681) #9	RPL37A (ENSDLEG00000011670) #11	SMARCAL1 (ENSDLEG00000011642) #12	MARCHF4 (ENSDLEG00000011629) #13	XRCC5 (ENSDLEG00000011573) #14	TMEM169 (ENSDLEG00000011562) #16	MREG (ENSDLEG00000011537) #18	FN1 (ENSDLEG00000011437) #19	ATIC (ENSDLEG00000011357) #20	ABCA12 (ENSDLEG00000011292) #21	BARD1 (ENSDLEG00000011262) #22	VWC2L (ENSDLEG00000011244) #23	IKZF2 (ENSDLEG00000011195) #24	ERBB4 (ENSDLEG00000011065) #26	ENSDLEG00000011044	CPS1 (ENSDLEG00000010899) #27	LANCL1 (ENSDLEG00000010841) #28	ENSDLEG00000010817 #29	ACADL (ENSDLEG00000010802) #31	KANSL1L (ENSDLEG00000010779) #32	ENSDLEG00000010744 #33	ENSDLEG00000010732	UNC80 (ENSDLEG00000010609) #34	MAP2 (ENSDLEG00000010499) #35	ENSDLEG00000010475 #36	PTH2R (ENSDLEG00000010408) #37
Vaquita	MODERN SPECIES	18	ENSPSNG00000014184	RUFY4 (ENSPSNG00000014217)	TNS1 (ENSPSNG00000014473)	TNP1 (ENSPSNG00000015249) #7	IGFBP5 (ENSPSNG00000015299) #8	IGFBP2 (ENSPSNG00000015351) #9	RPL37A (ENSPSNG00000015410) ##11	SMARCAL1 (ENSPSNG00000015537) #12	MARCHF4 (ENSPSNG00000015751) #13	XRCC5 (ENSPSNG00000015841) #14	TMEM169 (ENSPSNG00000015908) #16	MREG (ENSPSNG00000015961) #18	FN1 (ENSPSNG00000016255) #19	ATIC (ENSPSNG00000016623) #20	ABCA12 (ENSPSNG00000016762) #21	BARD1 (ENSPSNG00000017308) #22	VWC2L (ENSPSNG00000017630) #23	ENSPSNG00000017666	SPAG16 (ENSPSNG00000017700)	IKZF2 (ENSPSNG00000017845) #24	ENSPSNG00000017988	ERBB4 (ENSPSNG00000018144) #26	ENSPSNG00000018762	CPS1 (ENSPSNG00000018881) #27	LANCL1 (ENSPSNG00000019514) #28	MYL1 (ENSPSNG00000019567) #29	ACADL (ENSPSNG00000019649) #31	KANSL1L (ENSPSNG00000019694) #32	ENSPSNG00000019741 #33	UNC80 (ENSPSNG00000020123) #34	MAP2 (ENSPSNG00000021466) #35
Dolphin	MODERN SPECIES	810																BARD1 (ENSTTRG00000007661) #22	VWC2L (ENSTTRG00000007658) #23	SPAG16 (ENSTTRG00000007630)
Sperm whale	MODERN SPECIES	11	VIL1 (ENSPCTG00005017833)	PNKD (ENSPCTG00005017792)	ENSPCTG00005017764	ENSPCTG00005017711	ENSPCTG00005017699	TNP1 (ENSPCTG00005017658) #7	RPL37A (ENSPCTG00005017558) ##11	MARCH4 (ENSPCTG00005017507) #13	XRCC5 (ENSPCTG00005017451) #14	TMEM169 (ENSPCTG00005017414) #16	PECR (ENSPCTG00005017315) #17	MREG (ENSPCTG00005017221) #18	FN1 (ENSPCTG00005010889) #19	ATIC (ENSPCTG00005010239) #20	ABCA12 (ENSPCTG00005009725) #21	BARD1 (ENSPCTG00005009198) #22	VWC2L (ENSPCTG00005009115) #23	SPAG16 (ENSPCTG00005009033)	IKZF2 (ENSPCTG00005008691) #24	ENSPCTG00005008634	ERBB4 (ENSPCTG00005008147) #26	ENSPCTG00005008116	CPS1 (ENSPCTG00005007806) #27	LANCL1 (ENSPCTG00005007711) #28	ENSPCTG00005007695 #29	ENSPCTG00005007683 #29	MYL1 (ENSPCTG00005007638) #29	ACADL (ENSPCTG00005007603) #31	KANSL1L (ENSPCTG00005007546) #32	RPE (ENSPCTG00005007416) #33	UNC80 (ENSPCTG00005006733) #34
Blue whale	MODERN SPECIES	18	RUFY4 (ENSBMSG00010004294)	TNS1 (ENSBMSG00010004143)	TNP1 (ENSBMSG00010004074) #7	IGFBP5 (ENSBMSG00010004065) #8	IGFBP2 (ENSBMSG00010004055) #9	RPL37A (ENSBMSG00010004043) ##11	ENSBMSG00010004033	SMARCAL1 (ENSBMSG00010004020) #12	MARCHF4 (ENSBMSG00010004007) #13	XRCC5 (ENSBMSG00010003999) #14	TMEM169 (ENSBMSG00010003988) #16	MREG (ENSBMSG00010003983) #18	FN1 (ENSBMSG00010003854) #19	ATIC (ENSBMSG00010003763) #20	ABCA12 (ENSBMSG00010003607) #21	BARD1 (ENSBMSG00010003318) #22	VWC2L (ENSBMSG00010003263) #23	ENSBMSG00010003250	ENSBMSG00010003241	SPAG16 (ENSBMSG00010003224)	IKZF2 (ENSBMSG00010003187) #24	ENSBMSG00010003157	ERBB4 (ENSBMSG00010003029) #26	ENSBMSG00010002996	CPS1 (ENSBMSG00010002893) #27	LANCL1 (ENSBMSG00010002864) #28	MYL1 (ENSBMSG00010002843) #29	ENSBMSG00010002831	ACADL (ENSBMSG00010002817) #31	KANSL1L (ENSBMSG00010002800) #32	ENSBMSG00010002786 #33
Pecora	ANCESTRAL SPECIES	16	ENSGT00940000154044.a.b	ENSGT00940000155400.B	ENSGT00390000000539 #7	ENSGT00940000155890 #8	ENSGT00940000158542 #9	ENSGT00390000016988.a.b ##11	ENSGT00940000157608 #12	ENSGT00940000158179 #13	ENSGT00940000153239.A #14	ENSGT00390000015276 #16	ENSGT00940000156882 #17	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447 #33	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000158720.c.b.t #36	ENSGT00940000159094 #37	ENSGT00940000156307.b
Yarkand deer	MODERN SPECIES	31	ENSCHYG00000002849	TNP1 (ENSCHYG00000002856) #7	IGFBP5 (ENSCHYG00000002877) #8	IGFBP2 (ENSCHYG00000002895) #9	RPL37A (ENSCHYG00000002919) ##11	SMARCAL1 (ENSCHYG00000002948) #12	MARCHF4 (ENSCHYG00000003004) #13	XRCC5 (ENSCHYG00000003017) #14	TMEM169 (ENSCHYG00000003059) #16	PECR (ENSCHYG00000003070) #17	MREG (ENSCHYG00000003092) #18	FN1 (ENSCHYG00000003158) #19	ATIC (ENSCHYG00000003528) #20	ENSCHYG00000003569	ABCA12 (ENSCHYG00000003601) #21	ENSCHYG00000003753 #22	VWC2L (ENSCHYG00000003794) #23	SPAG16 (ENSCHYG00000003817)	ENSCHYG00000003836	IKZF2 (ENSCHYG00000003879) #24	ERBB4 (ENSCHYG00000003952) #26	ENSCHYG00000004056	ENSCHYG00000004063	ENSCHYG00000004069	CPS1 (ENSCHYG00000004084) #27	LANCL1 (ENSCHYG00000004128) #28	ENSCHYG00000004138	MYL1 (ENSCHYG00000004152) #29	ACADL (ENSCHYG00000004178) #31	ENSCHYG00000004220	KANSL1L (ENSCHYG00000004240) #32
Percora_a	ANCESTRAL SPECIES	5	ENSGT00940000154044.a.b	ENSGT00940000155400.B	ENSGT00390000000539 #7	ENSGT00940000155890 #8	ENSGT00940000158542 #9	ENSGT00390000016988.a.b ##11	ENSGT00940000157608 #12	ENSGT00940000158179 #13	ENSGT00940000153239.A #14	ENSGT00390000015276 #16	ENSGT00940000156882 #17	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447 #33	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000158720.c.b.t #36	ENSGT00940000159094 #37	ENSGT00940000156307.b
Bovidae	DUPLICATION
Bovidae	ANCESTRAL SPECIES	8	ENSGT00940000154044.a.b	ENSGT00940000155400.B	ENSGT00390000000539 #7	ENSGT00940000155890 #8	ENSGT00940000158542 #9	ENSGT00390000016988.a.b ##11	ENSGT00940000157608 #12	ENSGT00940000158179 #13	ENSGT00940000153239.A #14	ENSGT00390000015276 #16	ENSGT00940000156882 #17	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532.k #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447 #33	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000158720.c.b.t #36	ENSGT00940000159094 #37	ENSGT00940000156307.b
Caprinae	DUPLICATION
Caprinae	ANCESTRAL SPECIES	5	ENSGT00940000154044.a.b	ENSGT00940000155400.B	ENSGT00390000000539 #7	ENSGT00940000155890 #8	ENSGT00940000158542 #9	ENSGT00940000167978	ENSGT00940000157608 #12	ENSGT00940000158179 #13	ENSGT00940000153239.A #14	ENSGT00390000015276 #16	ENSGT00940000156882 #17	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532.k.a #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00940000154695 #26	ENSGT01010000228811	ENSGT00940000157192 #27	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447.lb.a #33	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000158720.c.b.t #36	ENSGT00940000159094 #37
Goat	MODERN SPECIES	11	ENSCHIG00000024380	TNS1 (ENSCHIG00000014628)	TNP1 (ENSCHIG00000024932) #7	IGFBP5 (ENSCHIG00000011607) #8	IGFBP2 (ENSCHIG00000025360) #9	ENSCHIG00000009863	SMARCAL1 (ENSCHIG00000025342) #12	MARCHF4 (ENSCHIG00000025938) #13	XRCC5 (ENSCHIG00000022047) #14	TMEM169 (ENSCHIG00000023199) #16	PECR (ENSCHIG00000025963) #17	MREG (ENSCHIG00000024433) #18	FN1 (ENSCHIG00000021438) #19	ATIC (ENSCHIG00000018659) #20	ABCA12 (ENSCHIG00000019371) #21	ENSCHIG00000021676 #22	VWC2L (ENSCHIG00000023299) #23	ENSCHIG00000024996	ENSCHIG00000025009	IKZF2 (ENSCHIG00000008623) #24	ENSCHIG00000025711 #26	ENSCHIG00000015255	CPS1 (ENSCHIG00000025029) #27	LANCL1 (ENSCHIG00000015499) #28	MYL1 (ENSCHIG00000016096) #29	ACADL (ENSCHIG00000012492) #31	KANSL1L (ENSCHIG00000025531) #32	ENSCHIG00000017628 #33	UNC80 (ENSCHIG00000023318) #34	MAP2 (ENSCHIG00000000510) #35	ENSCHIG00000015978 #36
Rambouillet Sheep	MODERN SPECIES	11	ENSOARG00020025597	RUFY4 (ENSOARG00020025590)	TNS1 (ENSOARG00020025486)	TNP1 (ENSOARG00020025444) #7	IGFBP5 (ENSOARG00020025439) #8	RPL37A (ENSOARG00020025429) ##11	IGFBP2 (ENSOARG00020025420) #9	SMARCAL1 (ENSOARG00020025380) #12	MARCHF4 (ENSOARG00020025369) #13	XRCC5 (ENSOARG00020025342) #14	PECR (ENSOARG00020025327) #17	MREG (ENSOARG00020025322) #18	FN1 (ENSOARG00020024839) #19	ATIC (ENSOARG00020024672) #20	ABCA12 (ENSOARG00020024186) #21	ENSOARG00020023630 #22	VWC2L (ENSOARG00020023565) #23	SPAG16 (ENSOARG00020023425)	IKZF2 (ENSOARG00020023289) #24	ERBB4 (ENSOARG00020022203) #26	ENSOARG00020022121	ENSOARG00020022071	ENSOARG00020022058	CPS1 (ENSOARG00020021614) #27	LANCL1 (ENSOARG00020021560) #28	MYL1b (ENSOARG00020021419) #29	ACADL (ENSOARG00020021309) #31	KANSL1L (ENSOARG00020021126) #32	RPE (ENSOARG00020021044) #33	UNC80 (ENSOARG00020019570) #34	MAP2 (ENSOARG00020019287) #35
Caprinae	ANCESTRAL SPECIES																	ENSGT00940000156532.k.b #22
Rambouillet Sheep	MODERN SPECIES	4	ENSOARG00020010596	APBB1IP (ENSOARG00020010637)	CCNY (ENSOARG00020010831)	ENSOARG00020011089	CREM (ENSOARG00020011207)	CUL2 (ENSOARG00020014397)	ENSOARG00020014597	PARD3 (ENSOARG00020014835)	NRP1 (ENSOARG00020022479)	ITGB1 (ENSOARG00020022585)	ARL5B (ENSOARG00020022913)	ENSOARG00020022950	PLXDC2 (ENSOARG00020023004)	ENSOARG00020023295	NEBL (ENSOARG00020023328)	ENSOARG00020023735 #22	ENSOARG00020023745	SKIDA1 (ENSOARG00020023795)	MLLT10 (ENSOARG00020023844)	DNAJC1 (ENSOARG00020024307)	ENSOARG00020024323	COMMD3 (ENSOARG00020024334)	BMI1 (ENSOARG00020024353)	SPAG6 (ENSOARG00020024405)	PIP4K2A (ENSOARG00020024466)	ARMC3 (ENSOARG00020024507)	MSRB2 (ENSOARG00020024574)	PTF1A (ENSOARG00020024582)	ENSOARG00020024601	OTUD1 (ENSOARG00020024691)	KIAA1217 (ENSOARG00020024750)
Bovinae	ANCESTRAL SPECIES	5	ENSGT00940000154044.a.b	ENSGT00940000155400.B	ENSGT00390000000539 #7	ENSGT00940000155890 #8	ENSGT00940000158542 #9	ENSGT00390000016988.a.b ##11	ENSGT00940000157608 #12	ENSGT00940000158179 #13	ENSGT00940000153239.A #14	ENSGT00390000015276 #16	ENSGT00940000156882 #17	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532.k #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447 #33	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000158720.c.b.t #36	ENSGT00940000159094 #37	ENSGT00950000182965.b
Bos	ANCESTRAL SPECIES	6	ENSGT00940000154044.a.b	ENSGT00940000155400.B	ENSGT00390000000539 #7	ENSGT00940000155890 #8	ENSGT00940000158542 #9	ENSGT00390000016988.a.b ##11	ENSGT00940000157608 #12	ENSGT00940000158179 #13	ENSGT00940000153239.A #14	ENSGT00390000015276 #16	ENSGT00940000156882 #17	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532.k #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447 #33	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000158720.c.b.t #36	ENSGT00940000159094 #37	ENSGT00940000156307.b
Bos_a	ANCESTRAL SPECIES	4	ENSGT00940000154044.a.b	ENSGT00940000155400.B	ENSGT00390000000539 #7	ENSGT00940000155890 #8	ENSGT00940000158542 #9	ENSGT00390000016988.a.b ##11	ENSGT00940000157608 #12	ENSGT00940000158179 #13	ENSGT00940000153239.A #14	ENSGT00390000015276 #16	ENSGT00940000156882 #17	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532.k #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447 #33	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000158720.c.b.t #36	ENSGT00940000159094 #37	ENSGT00940000156307.b
Wild yak	MODERN SPECIES	2452													FN1 (ENSBMUG00000023102) #19	ATIC (ENSBMUG00000022748) #20	ABCA12 (ENSBMUG00000022714) #21	ENSBMUG00000022648 #22	VWC2L (ENSBMUG00000022543) #23
Domestic yak	MODERN SPECIES	11	TNS1 (ENSBGRG00000001914)	ENSBGRG00000002184	TNP1 (ENSBGRG00000002189) #7	ENSBGRG00000002217	IGFBP5 (ENSBGRG00000002228) #8	IGFBP2 (ENSBGRG00000002242) #9	RPL37A (ENSBGRG00000002272) ##11	SMARCAL1 (ENSBGRG00000002323) #12	MARCHF4 (ENSBGRG00000002448) #13	XRCC5 (ENSBGRG00000002486) #14	TMEM169 (ENSBGRG00000002710) #16	PECR (ENSBGRG00000002736) #17	FN1 (ENSBGRG00000002811) #19	ATIC (ENSBGRG00000002957) #20	ABCA12 (ENSBGRG00000003073) #21	BARD1 (ENSBGRG00000003261) #22	VWC2L (ENSBGRG00000003498) #23	SPAG16 (ENSBGRG00000003519)	IKZF2 (ENSBGRG00000003601) #24	ENSBGRG00000003764	ERBB4 (ENSBGRG00000003801) #26	CPS1 (ENSBGRG00000004265) #27	LANCL1 (ENSBGRG00000004687) #28	MYL1 (ENSBGRG00000004749) #29	ACADL (ENSBGRG00000004885) #31	KANSL1L (ENSBGRG00000004930) #32	ENSBGRG00000005051 #33	UNC80 (ENSBGRG00000005202) #34	MAP2 (ENSBGRG00000005995) #35	ENSBGRG00000006119 #36	PTH2R (ENSBGRG00000006150) #37
Bos_b	ANCESTRAL SPECIES	20	ENSGT00940000155400.B	ENSGT00390000000539 #7	ENSGT00940000155890 #8	ENSGT00940000158542 #9	ENSGT00390000016988.a.b ##11	ENSGT00940000157608 #12	ENSGT00940000158179 #13	ENSGT00940000153239.A #14	ENSGT00390000015276 #16	ENSGT00940000156882 #17	ENSGT01050000247862	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532.k #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29
Cow	MODERN SPECIES	11	TNS1 (ENSBTAG00000002485)	TNP1 (ENSBTAG00000019003) #7	IGFBP5 (ENSBTAG00000054218) #8	IGFBP2 (ENSBTAG00000005596) #9	RPL37A (ENSBTAG00000051254) ##11	SMARCAL1 (ENSBTAG00000003843) #12	MARCHF4 (ENSBTAG00000049897) #13	XRCC5 (ENSBTAG00000010426) #14	PECR (ENSBTAG00000006821) #17	TMEM169 (ENSBTAG00000010413) #16	MREG (ENSBTAG00000013215) #18	FN1 (ENSBTAG00000008300) #19	ATIC (ENSBTAG00000019274) #20	ABCA12 (ENSBTAG00000003472) #21	ENSBTAG00000051517	BARD1 (ENSBTAG00000033690) #22	VWC2L (ENSBTAG00000053460) #23	ENSBTAG00000052399	ENSBTAG00000018549	IKZF2 (ENSBTAG00000037804) #24	ENSBTAG00000053477 #26	ENSBTAG00000005239	ERBB4 (ENSBTAG00000012647) #26	CPS1 (ENSBTAG00000016662) #27	LANCL1 (ENSBTAG00000015066) #28	MYL1 (ENSBTAG00000009707) #29	ENSBTAG00000010722	ACADL (ENSBTAG00000010579) #31	KANSL1L (ENSBTAG00000021600) #32	RPE (ENSBTAG00000054647) #33	UNC80 (ENSBTAG00000015415) #34
Hybrid Bos Indicus	MODERN SPECIES	11	ENSBIXG00005024424	TNP1 (ENSBIXG00005024456) #7	IGFBP5 (ENSBIXG00005004180) #8	IGFBP2 (ENSBIXG00005004188) #9	ENSBIXG00005024536	RPL37A (ENSBIXG00005024599) ##11	SMARCAL1 (ENSBIXG00005024785) #12	MARCHF4 (ENSBIXG00005024854) #13	XRCC5 (ENSBIXG00005024910) #14	TMEM169 (ENSBIXG00005024972) #16	PECR (ENSBIXG00005025092) #17	ENSBIXG00005004282	FN1 (ENSBIXG00005025569) #19	ATIC (ENSBIXG00005025675) #20	ABCA12 (ENSBIXG00005025713) #21	ENSBIXG00005005782 #22	VWC2L (ENSBIXG00005004449) #23	SPAG16 (ENSBIXG00005004460)	IKZF2 (ENSBIXG00005004492) #24	ENSBIXG00005026391	ENSBIXG00005026408	ENSBIXG00005026433	ENSBIXG00005007409	ERBB4 (ENSBIXG00005026738) #26	CPS1 (ENSBIXG00005027520) #27	LANCL1 (ENSBIXG00005027712) #28	MYL1 (ENSBIXG00005027778) #29	ENSBIXG00005004776	ENSBIXG00005027813	ENSBIXG00005027821	ACADL (ENSBIXG00005027851) #31
American bison	MODERN SPECIES	3330	TNS1 (ENSBBBG00000009746)	TNP1 (ENSBBBG00000001609) #7	ENSBBBG00000001612 #8	IGFBP2 (ENSBBBG00000009764) #9	RPL37A (ENSBBBG00000009773) ##11	SMARCAL1 (ENSBBBG00000009787) #12	MARCHF4 (ENSBBBG00000009795) #13	XRCC5 (ENSBBBG00000009803) #14	TMEM169 (ENSBBBG00000009808) #16	PECR (ENSBBBG00000008537) #17	MREG (ENSBBBG00000001636) #18	FN1 (ENSBBBG00000010079) #19	ATIC (ENSBBBG00000010156) #20	ABCA12 (ENSBBBG00000010212) #21	ENSBBBG00000010218	BARD1 (ENSBBBG00000010253) #22	VWC2L (ENSBBBG00000000125) #23	SPAG16 (ENSBBBG00000000106)	IKZF2 (ENSBBBG00000000044) #24	ERBB4 (ENSBBBG00000010300) #26	CPS1 (ENSBBBG00000010353) #27	LANCL1 (ENSBBBG00000010389) #28	MYL1 (ENSBBBG00000010407) #29	ACADL (ENSBBBG00000001806) #31	KANSL1L (ENSBBBG00000010441) #32	ENSBBBG00000007586 #33	UNC80 (ENSBBBG00000010561) #34	MAP2 (ENSBBBG00000010617) #35	ENSBBBG00000010626 #36	PTH2R (ENSBBBG00000010642) #37	ENSBBBG00000010646
Bovidae	ANCESTRAL SPECIES																	ENSGT00940000156532.l #22
Bovinae	ANCESTRAL SPECIES																	ENSGT00940000156532.l #22
Bos	ANCESTRAL SPECIES																	ENSGT00940000156532.l #22
Bos_b	ANCESTRAL SPECIES	9	ENSGT00550000074867	ENSGT00940000161424	ENSGT00550000075024	ENSGT00530000063425.a.b	ENSGT00940000159118	ENSGT00390000006820	ENSGT00940000158817	ENSGT00940000163055	ENSGT00940000157364.C	ENSGT00950000183010.a.b.a.a.a.a.a.b.b.i.a.a.a	ENSGT00940000158952	ENSGT00940000154292.a.b	ENSGT00940000163627	ENSGT00940000153431.a.l.a	ENSGT00940000159080	ENSGT00940000156532.l #22	ENSGT00390000003855.a	ENSGT00530000063603.B	ENSGT00390000007723	ENSGT00390000011433	ENSGT00390000011103.A	ENSGT00940000162821.h	ENSGT00390000005045	ENSGT00940000154864.b	ENSGT00940000155564	ENSGT00940000156568	ENSGT00950000183166.a.a.a.b	ENSGT00940000165870	ENSGT00900000141103	ENSGT00440000033965	ENSGT00940000155559.b
Hybrid Bos Indicus	MODERN SPECIES	2	PPP1R21 (ENSBIXG00005020937)	STON1 (ENSBIXG00005020833)	GTF2A1L (ENSBIXG00005020773)	LHCGR (ENSBIXG00005020676)	ENSBIXG00005020568	ENSBIXG00005007156	FSHR (ENSBIXG00005020542)	NRXN1 (ENSBIXG00005020353)	ENSBIXG00005019055	ENSBIXG00005019035	ENSBIXG00005019024	ENSBIXG00005018993	ENSBIXG00005018968	ENSBIXG00005018960	ASB3 (ENSBIXG00005018919)	ENSBIXG00005018883 #22	CHAC2 (ENSBIXG00005018860)	ERLEC1 (ENSBIXG00005018839)	GPR75 (ENSBIXG00005018758)	PSME4 (ENSBIXG00005018741)	ENSBIXG00005018704	C2orf73 (ENSBIXG00005018616)	SPTBN1 (ENSBIXG00005003004)	EML6 (ENSBIXG00005018364)	RTN4 (ENSBIXG00005018220)	CLHC1 (ENSBIXG00005018120)	ENSBIXG00005018073	MTIF2 (ENSBIXG00005002925)	ENSBIXG00005017989	CCDC88A (ENSBIXG00005017956)	CFAP36 (ENSBIXG00005017832)
Cow	MODERN SPECIES	2	MSH6 (ENSBTAG00000001424)	FBXO11 (ENSBTAG00000001425)	FOXN2 (ENSBTAG00000015151)	PPP1R21 (ENSBTAG00000002570)	STON1 (ENSBTAG00000004168)	GTF2A1L (ENSBTAG00000023999)	LHCGR (ENSBTAG00000016573)	ENSBTAG00000027015	FSHR (ENSBTAG00000032424)	NRXN1 (ENSBTAG00000046199)	NRXN1 (ENSBTAG00000024021)	ENSBTAG00000052116	ENSBTAG00000027786	ENSBTAG00000002943	ASB3 (ENSBTAG00000019458)	ENSBTAG00000051601 #22	CHAC2 (ENSBTAG00000019459)	ERLEC1 (ENSBTAG00000008068)	GPR75 (ENSBTAG00000000102)	PSME4 (ENSBTAG00000020262)	ENSBTAG00000024019	ACYP2 (ENSBTAG00000006852)	ENSBTAG00000046563	C11H2orf73 (ENSBTAG00000006861)	SPTBN1 (ENSBTAG00000006995)	EML6 (ENSBTAG00000011101)	RTN4 (ENSBTAG00000011104)	CLHC1 (ENSBTAG00000000295)	RPS27A (ENSBTAG00000015473)	MTIF2 (ENSBTAG00000015481)	PRORSD1 (ENSBTAG00000017460)
Bos_a	ANCESTRAL SPECIES																	ENSGT00940000156532.l #22
Wild yak	MODERN SPECIES	2263															ENSBMUG00000024771	ENSBMUG00000024762 #22	ASB3 (ENSBMUG00000024758)	CHAC2 (ENSBMUG00000024738)
Caprinae	ANCESTRAL SPECIES	3	ENSGT00940000163651.l	ENSGT00940000164306	ENSGT00940000163783	ENSGT00940000162241	ENSGT00940000154619.g.b.a.a.a	ENSGT00940000154619.g.a.b.a	ENSGT00940000163945.a	ENSGT00940000163945.b	ENSGT00940000162532	ENSGT00940000163044.d	ENSGT00940000163044.c	ENSGT00440000039287	ENSGT00950000182755.b.a.a.a.a.a.a.a.b.b.a.b	ENSGT00950000182755.b.a.a.a.a.a.a.b.i	ENSGT00950000182755.b.a.a.a.a.a.a.b.j	ENSGT00940000156532.l #22	ENSGT01030000234638.b.a.a	ENSGT00390000002121	ENSGT00940000159016	ENSGT00390000008063	ENSGT01100000263497.E.a.a	ENSGT00390000006806	ENSGT00940000156708.a.a	ENSGT00390000012267	ENSGT00390000003817	ENSGT00940000161361	ENSGT00940000160152	ENSGT00940000161195	ENSGT00940000155828	ENSGT00870000137755	ENSGT00390000010768
Rambouillet Sheep	MODERN SPECIES	21	ENSOARG00020000670	ENSOARG00020000655	OR7D2 (ENSOARG00020000640)	ENSOARG00020000630	ZNF317 (ENSOARG00020000578)	ENSOARG00020000555	ENSOARG00020000513	ENSOARG00020000501	ENSOARG00020000490	ENSOARG00020000485	OR1M1 (ENSOARG00020000458)	ENSOARG00020000435	ENSOARG00020000419	ENSOARG00020000407	ENSOARG00020000232	ENSOARG00020013719 #22	MAN2B1 (ENSOARG00020012993)	WDR83OS (ENSOARG00020012900)	WDR83 (ENSOARG00020012835)	DHPS (ENSOARG00020012703)	ENSOARG00020012653	FBXW9 (ENSOARG00020012297)	TNPO2 (ENSOARG00020012156)	TRIR (ENSOARG00020012000)	ASNA1 (ENSOARG00020011930)	BEST2 (ENSOARG00020011833)	JUNB (ENSOARG00020011427)	PRDX2 (ENSOARG00020011331)	THSD8 (ENSOARG00020011281)	RNASEH2A (ENSOARG00020011239)	RTBDN (ENSOARG00020011079)
Goat	MODERN SPECIES	26	ENSCHIG00000026561	ENSCHIG00000001750	ENSCHIG00000008158	ZNF317 (ENSCHIG00000015369)	ENSCHIG00000021713	ENSCHIG00000023752	ENSCHIG00000016520	ENSCHIG00000022442	ENSCHIG00000004140	ENSCHIG00000004337	ENSCHIG00000026471	ENSCHIG00000021101	ENSCHIG00000020779	ENSCHIG00000008992	ENSCHIG00000019636	ENSCHIG00000016295 #22	MAN2B1 (ENSCHIG00000001921)	WDR83OS (ENSCHIG00000020903)	WDR83 (ENSCHIG00000025793)	DHPS (ENSCHIG00000011017)	ENSCHIG00000018933	FBXW9 (ENSCHIG00000027225)	TNPO2 (ENSCHIG00000011718)	TRIR (ENSCHIG00000017848)	GET3 (ENSCHIG00000023078)	BEST2 (ENSCHIG00000009210)	HOOK2 (ENSCHIG00000017730)	JUNB (ENSCHIG00000007846)	ENSCHIG00000008839	RNASEH2A (ENSCHIG00000014460)	RTBDN (ENSCHIG00000018795)
Siberian musk deer	MODERN SPECIES	352	RUFY4 (ENSMMSG00000016588)	TNS1 (ENSMMSG00000015987)	TNP1 (ENSMMSG00000015890) #7	IGFBP5 (ENSMMSG00000015864) #8	IGFBP2 (ENSMMSG00000015853) #9	RPL37A (ENSMMSG00000015781) ##11	SMARCAL1 (ENSMMSG00000015705) #12	MARCHF4 (ENSMMSG00000015684) #13	XRCC5 (ENSMMSG00000015657) #14	TMEM169 (ENSMMSG00000024214) #16	PECR (ENSMMSG00000024210) #17	ENSMMSG00000024206	FN1 (ENSMMSG00000022388) #19	ATIC (ENSMMSG00000022097) #20	ABCA12 (ENSMMSG00000021923) #21	BARD1 (ENSMMSG00000021660) #22	VWC2L (ENSMMSG00000021613) #23	SPAG16 (ENSMMSG00000021415)	IKZF2 (ENSMMSG00000021166) #24	ENSMMSG00000021126	ERBB4 (ENSMMSG00000020665) #26	ENSMMSG00000020623	CPS1 (ENSMMSG00000020103) #27	LANCL1 (ENSMMSG00000020057) #28	MYL1 (ENSMMSG00000019985) #29	ACADL (ENSMMSG00000019943) #31	ENSMMSG00000019930	KANSL1L (ENSMMSG00000019864) #32	ENSMMSG00000019805 #33	UNC80 (ENSMMSG00000019152) #34	MAP2 (ENSMMSG00000018946) #35
Camelidae	ANCESTRAL SPECIES	58													ENSGT00940000155126 #19	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00390000002231.d.b	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447 #33	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000159094 #37	ENSGT00940000156307.b
Arabian camel	MODERN SPECIES	31	SLC40A1 (ENSCDRG00005006998)	ASDURF (ENSCDRG00005007145)	ASNSD1 (ENSCDRG00005007073)	ANKAR (ENSCDRG00005007243)	OSGEPL1 (ENSCDRG00005007378)	ORMDL1 (ENSCDRG00005007425)	PMS1 (ENSCDRG00005007488)	MSTN (ENSCDRG00005007742)	C2orf88 (ENSCDRG00005007770)	HIBCH (ENSCDRG00005007807)	INPP1 (ENSCDRG00005007903)	MFSD6 (ENSCDRG00005007954)	FN1 (ENSCDRG00005008111) #19	ATIC (ENSCDRG00005009297) #20	ABCA12 (ENSCDRG00005009551) #21	BARD1 (ENSCDRG00005010435) #22	VWC2L (ENSCDRG00005010599) #23	SPAG16 (ENSCDRG00005010669)	IKZF2 (ENSCDRG00005010931) #24	ENSCDRG00005011221	ERBB4 (ENSCDRG00005011281) #26	ENSCDRG00005011902	CPS1 (ENSCDRG00005011935) #27	LANCL1 (ENSCDRG00005012357) #28	MYL1 (ENSCDRG00005012450) #29	ACADL (ENSCDRG00005012612) #31	KANSL1L (ENSCDRG00005012697) #32	ENSCDRG00005012826 #33	UNC80 (ENSCDRG00005012995) #34	MAP2 (ENSCDRG00005014163) #35	ENSCDRG00005014776 #36
Alpaca	MODERN SPECIES	2225															ABCA12 (ENSVPAG00000004266) #21	BARD1 (ENSVPAG00000004265) #22	VWC2L (ENSVPAG00000004264) #23	SPAG16 (ENSVPAG00000004263)	IKZF2 (ENSVPAG00000004262) #24	ERBB4 (ENSVPAG00000004261) #26
Laurasiatheria_b	ANCESTRAL SPECIES	16	ENSGT00940000154044.a.b	ENSGT00940000155400.B	ENSGT00390000000539 #7	ENSGT00940000155890 #8	ENSGT00940000158542 #9	ENSGT00390000016988.a.b ##11	ENSGT00940000157608 #12	ENSGT00940000158179 #13	ENSGT00940000153239.A #14	ENSGT00390000015276 #16	ENSGT00940000156882 #17	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447 #33	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000159094 #37	ENSGT00940000156307.b	ENSGT00390000012547.b
Laurasiatheria_c	ANCESTRAL SPECIES	18	ENSGT00940000154044.a.b	ENSGT00940000155400.B	ENSGT00390000000539 #7	ENSGT00940000155890 #8	ENSGT00940000158542 #9	ENSGT00390000016988.a.b ##11	ENSGT00940000157608 #12	ENSGT00940000158179 #13	ENSGT00940000153239.A #14	ENSGT00390000015276 #16	ENSGT00940000156882 #17	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652.f #31	ENSGT00530000063688.a #32	ENSGT00390000001447 #33	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000159094 #37	ENSGT00940000156307.b	ENSGT00390000012547.b
Chiroptera	ANCESTRAL SPECIES	11	ENSGT00940000155400.B	ENSGT00390000000539 #7	ENSGT00940000155890 #8	ENSGT00940000158542 #9	ENSGT00390000016988.b #11	ENSGT00390000016988.a.b ##11	ENSGT00940000157608 #12	ENSGT00940000158179 #13	ENSGT00940000153239.A #14	ENSGT00390000015276 #16	ENSGT00940000156882 #17	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652.f #31	ENSGT00530000063688.a #32	ENSGT00390000001447 #33	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000159094 #37	ENSGT00940000156307.b	ENSGT00390000012547.b
Microchiroptera	ANCESTRAL SPECIES	15	ENSGT00940000155400.B	ENSGT00390000000539 #7	ENSGT00940000155890 #8	ENSGT00940000158542 #9	ENSGT00390000016988.b #11	ENSGT00390000016988.a.b ##11	ENSGT00940000157608 #12	ENSGT00940000158179 #13	ENSGT00940000153239.A #14	ENSGT00390000015276 #16	ENSGT00940000156882 #17	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652.f #31	ENSGT00530000063688.a #32	ENSGT00390000001447 #33	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000159094 #37	ENSGT00940000156307.b	ENSGT00390000012547.b
Greater horseshoe bat	MODERN SPECIES	26	TNS1 (ENSRFEG00010012495)	TNP1 (ENSRFEG00010013265) #7	IGFBP5 (ENSRFEG00010013314) #8	IGFBP2 (ENSRFEG00010013360) #9	ENSRFEG00010013429	RPL37A (ENSRFEG00010013449) ##11	SMARCAL1 (ENSRFEG00010013666) #12	MARCHF4 (ENSRFEG00010013760) #13	XRCC5 (ENSRFEG00010013923) #14	TMEM169 (ENSRFEG00010014015) #16	PECR (ENSRFEG00010014067) #17	MREG (ENSRFEG00010014124) #18	FN1 (ENSRFEG00010014248) #19	ATIC (ENSRFEG00010014882) #20	ABCA12 (ENSRFEG00010014979) #21	BARD1 (ENSRFEG00010016379) #22	VWC2L (ENSRFEG00010017204) #23	SPAG16 (ENSRFEG00010017261)	ENSRFEG00010017326	IKZF2 (ENSRFEG00010017362) #24	ENSRFEG00010017533	ENSRFEG00010017581	ERBB4 (ENSRFEG00010017623) #26	ENSRFEG00010018450	CPS1 (ENSRFEG00010018496) #27	LANCL1 (ENSRFEG00010018871) #28	MYL1 (ENSRFEG00010018919) #29	ACADL (ENSRFEG00010019011) #31	KANSL1L (ENSRFEG00010019059) #32	ENSRFEG00010019086 #33	UNC80 (ENSRFEG00010019184) #34
Microbat	MODERN SPECIES	940	TNS1 (ENSMLUG00000007467)	TNP1 (ENSMLUG00000000771) #7	IGFBP5 (ENSMLUG00000025891) #8	IGFBP2 (ENSMLUG00000000766) #9	ENSMLUG00000000762 #11	SMARCAL1 (ENSMLUG00000001370) #12	ENSMLUG00000025408	MARCHF4 (ENSMLUG00000013680) #13	XRCC5 (ENSMLUG00000013661) #14	TMEM169 (ENSMLUG00000009531) #16	PECR (ENSMLUG00000013650) #17	MREG (ENSMLUG00000013643) #18	FN1 (ENSMLUG00000001838) #19	ATIC (ENSMLUG00000001830) #20	ABCA12 (ENSMLUG00000014147) #21	BARD1 (ENSMLUG00000014140) #22	VWC2L (ENSMLUG00000004050) #23	ENSMLUG00000004039	ENSMLUG00000024505 #24	IKZF2 (ENSMLUG00000012494) #24	ENSMLUG00000023988 #26	ENSMLUG00000022171 #26	ENSMLUG00000016092 #26	CPS1 (ENSMLUG00000015090) #27	LANCL1 (ENSMLUG00000002650) #28	MYL1 (ENSMLUG00000002641) #29	ENSMLUG00000017730	ACADL (ENSMLUG00000014508) #31	KANSL1L (ENSMLUG00000014487) #32	ENSMLUG00000014477 #33	UNC80 (ENSMLUG00000014442) #34
Megabat	MODERN SPECIES	848															ABCA12 (ENSPVAG00000002287) #21	BARD1 (ENSPVAG00000002286) #22
Equus	ANCESTRAL SPECIES	51	ENSGT00940000154044.a.b	ENSGT00940000155400.B	ENSGT00390000000539 #7	ENSGT00940000155890 #8	ENSGT00940000158542 #9	ENSGT00390000016988.a.b ##11	ENSGT00940000157608 #12	ENSGT00940000158179 #13	ENSGT00940000153239.A #14	ENSGT00390000015276 #16	ENSGT00940000156882 #17	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652.e #31	ENSGT00530000063688.a #32	ENSGT00390000001447 #33	ENSGT00640000091496 #34	ENSGT00940000156597.b #35
Horse	MODERN SPECIES	27	TNS1 (ENSECAG00000014711)	TNP1 (ENSECAG00000014618) #7	ENSECAG00000054451	IGFBP5 (ENSECAG00000013425) #8	IGFBP2 (ENSECAG00000035279) #9	RPL37A (ENSECAG00000030892) ##11	SMARCAL1 (ENSECAG00000007683) #12	MARCHF4 (ENSECAG00000007360) #13	XRCC5 (ENSECAG00000015940) #14	TMEM169 (ENSECAG00000015399) #16	PECR (ENSECAG00000013131) #17	MREG (ENSECAG00000052438) #18	FN1 (ENSECAG00000000701) #19	ATIC (ENSECAG00000014653) #20	ABCA12 (ENSECAG00000009468) #21	BARD1 (ENSECAG00000002113) #22	VWC2L (ENSECAG00000001965) #23	ENSECAG00000056274	SPAG16 (ENSECAG00000000274)	IKZF2 (ENSECAG00000032639) #24	ENSECAG00000039974	ERBB4 (ENSECAG00000022865) #26	CPS1 (ENSECAG00000028289) #27	ENSECAG00000049241	LANCL1 (ENSECAG00000009197) #28	MYL1 (ENSECAG00000005145) #29	ENSECAG00000044963 #31	ENSECAG00000057220	KANSL1L (ENSECAG00000000018) #32	ENSECAG00000030135 #33	UNC80 (ENSECAG00000024348) #34
Donkey	MODERN SPECIES	10	ENSEASG00005012541	ENSEASG00005025318 #7	ENSEASG00005012566 #8	IGFBP2 (ENSEASG00005012571) #9	ENSEASG00005030571	RPL37A (ENSEASG00005012575) ##11	SMARCAL1 (ENSEASG00005012579) #12	MARCHF4 (ENSEASG00005012582) #13	XRCC5 (ENSEASG00005012633) #14	TMEM169 (ENSEASG00005035772) #16	PECR (ENSEASG00005012695) #17	MREG (ENSEASG00005028536) #18	FN1 (ENSEASG00005012814) #19	ATIC (ENSEASG00005013331) #20	ABCA12 (ENSEASG00005013342) #21	BARD1 (ENSEASG00005013363) #22	VWC2L (ENSEASG00005013364) #23	ENSEASG00005013370	IKZF2 (ENSEASG00005013374) #24	ENSEASG00005013381 #26
Carnivora	ANCESTRAL SPECIES	17	ENSGT00940000154044.a.b	ENSGT00940000155400.B	ENSGT00390000000539 #7	ENSGT00940000155890 #8	ENSGT00940000158542 #9	ENSGT00390000016988.a.b ##11	ENSGT00940000157608 #12	ENSGT00940000158179 #13	ENSGT00940000153239.A #14	ENSGT00390000015276 #16	ENSGT00940000156882 #17	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447 #33	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000159094 #37	ENSGT00940000156307.b	ENSGT00390000012547.b
Caniformia	ANCESTRAL SPECIES	14	ENSGT00940000154044.a.b	ENSGT00940000155400.B	ENSGT00390000000539 #7	ENSGT00940000155890 #8	ENSGT00940000158542 #9	ENSGT00390000016988.a.b ##11	ENSGT00940000157608 #12	ENSGT00940000158179 #13	ENSGT00940000153239.A #14	ENSGT00390000015276 #16	ENSGT00940000156882 #17	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447 #33	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000159094 #37	ENSGT00940000156307.b	ENSGT00390000012547.b
Caniformia_b	ANCESTRAL SPECIES	13	ENSGT00940000154044.a.b	ENSGT00940000155400.B	ENSGT00390000000539 #7	ENSGT00940000155890 #8	ENSGT00940000158542 #9	ENSGT00390000016988.a.b ##11	ENSGT00940000157608 #12	ENSGT00940000158179 #13	ENSGT00940000153239.A #14	ENSGT00390000015276 #16	ENSGT00940000156882.l #17	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447 #33	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000159094 #37	ENSGT00940000156307.b	ENSGT00390000012547.b
Ursidae	ANCESTRAL SPECIES	7	ENSGT00940000154044.a.b	ENSGT00940000155400.B	ENSGT00390000000539 #7	ENSGT00940000155890 #8	ENSGT00940000158542 #9	ENSGT00390000016988.a.b ##11	ENSGT00940000157608 #12	ENSGT00940000158179 #13	ENSGT00940000153239.A #14	ENSGT00390000015276 #16	ENSGT00940000156882.l #17	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a.c.b #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447 #33	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000158720.c.b.cb #36	ENSGT00940000159094 #37	ENSGT00940000156307.b
Ursus	ANCESTRAL SPECIES	12	ENSGT00940000154044.a.b	ENSGT00940000155400.B	ENSGT00390000000539 #7	ENSGT00940000155890 #8	ENSGT00940000158542 #9	ENSGT00390000016988.a.b ##11	ENSGT00940000157608 #12	ENSGT00940000158179 #13	ENSGT00940000153239.A #14	ENSGT00390000015276 #16	ENSGT00940000156882.l #17	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23
American black bear	MODERN SPECIES	5314																BARD1 (ENSUAMG00000007688) #22
Polar bear	MODERN SPECIES	169	RUFY4 (ENSUMAG00000019692)	TNS1 (ENSUMAG00000019767)	TNP1 (ENSUMAG00000020130) #7	IGFBP5 (ENSUMAG00000020139) #8	IGFBP2 (ENSUMAG00000020155) #9	RPL37A (ENSUMAG00000020158) ##11	SMARCAL1 (ENSUMAG00000020164) #12	MARCHF4 (ENSUMAG00000020173) #13	XRCC5 (ENSUMAG00000020179) #14	TMEM169 (ENSUMAG00000000084) #16	PECR (ENSUMAG00000000160) #17	MREG (ENSUMAG00000000450) #18	FN1 (ENSUMAG00000000466) #19	ATIC (ENSUMAG00000000497) #20	ABCA12 (ENSUMAG00000000511) #21	BARD1 (ENSUMAG00000000925) #22	VWC2L (ENSUMAG00000001034) #23
Giant Panda	MODERN SPECIES	11	ENSAMEG00000024718	TNS1 (ENSAMEG00000003235)	TNP1 (ENSAMEG00000003356) #7	IGFBP5 (ENSAMEG00000027149) #8	IGFBP2 (ENSAMEG00000003374) #9	RPL37A (ENSAMEG00000003377) ##11	SMARCAL1 (ENSAMEG00000003379) #12	MARCHF4 (ENSAMEG00000003418) #13	XRCC5 (ENSAMEG00000003422) #14	TMEM169 (ENSAMEG00000026744) #16	PECR (ENSAMEG00000003490) #17	MREG (ENSAMEG00000026110) #18	FN1 (ENSAMEG00000003517) #19	ATIC (ENSAMEG00000003629) #20	ABCA12 (ENSAMEG00000003679) #21	BARD1 (ENSAMEG00000003804) #22	VWC2L (ENSAMEG00000003842) #23	SPAG16 (ENSAMEG00000008081)	IKZF2 (ENSAMEG00000008058) #24	ERBB4 (ENSAMEG00000007301) #26	CPS1 (ENSAMEG00000005080) #27	LANCL1 (ENSAMEG00000005046) #28	MYL1 (ENSAMEG00000005031) #29	ACADL (ENSAMEG00000004978) #31	KANSL1L (ENSAMEG00000004973) #32	ENSAMEG00000004965 #33	UNC80 (ENSAMEG00000004864) #34	MAP2 (ENSAMEG00000014971) #35	ENSAMEG00000030710 #36	PTH2R (ENSAMEG00000015327) #37	PIKFYVE (ENSAMEG00000015268)
Mustelinae	ANCESTRAL SPECIES	44												ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053.lb	ENSGT00940000157137 #24	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447 #33	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000159094 #37	ENSGT00940000156307.b	ENSGT00390000012547.b
Ferret	MODERN SPECIES	289												MREG (ENSMPUG00000007637) #18	FN1 (ENSMPUG00000007652) #19	ATIC (ENSMPUG00000007676) #20	ABCA12 (ENSMPUG00000007789) #21	BARD1 (ENSMPUG00000007816) #22	ENSMPUG00000019824	VWC2L (ENSMPUG00000007822) #23	ENSMPUG00000007826	ENSMPUG00000007834	IKZF2 (ENSMPUG00000007839) #24	ENSMPUG00000007887	ERBB4 (ENSMPUG00000007892) #26	CPS1 (ENSMPUG00000007909) #27	LANCL1 (ENSMPUG00000007928) #28	MYL1 (ENSMPUG00000007933) #29	ACADL (ENSMPUG00000007937) #31	KANSL1L (ENSMPUG00000007941) #32	ENSMPUG00000007948 #33	UNC80 (ENSMPUG00000008005) #34	MAP2 (ENSMPUG00000008039) #35
American mink	MODERN SPECIES	107												ENSNVIG00000011301 #18	FN1 (ENSNVIG00000010336) #19	PUR9 (ENSNVIG00000010219) #20	ABCA12 (ENSNVIG00000010058) #21	BARD1 (ENSNVIG00000009921) #22	VWC2L (ENSNVIG00000009906) #23	SPAG16 (ENSNVIG00000009863)	IKZF2 (ENSNVIG00000009778) #24	ERBB4 (ENSNVIG00000009625) #26	ENSNVIG00000009597	CPS1 (ENSNVIG00000009449) #27	LANCL1 (ENSNVIG00000009403) #28	MYL1 (ENSNVIG00000009358) #29	ACADL (ENSNVIG00000009328) #31	KANSL1L (ENSNVIG00000009283) #32	ENSNVIG00000009250 #33	UNC80 (ENSNVIG00000009127) #34
Canidae	ANCESTRAL SPECIES	20	ENSGT00940000154044.a.b	ENSGT00940000155400.B	ENSGT00390000000539 #7	ENSGT00940000155890 #8	ENSGT00940000158542 #9	ENSGT00940000167978	ENSGT00940000157608 #12	ENSGT00940000158179 #13	ENSGT00940000153239.A #14	ENSGT00390000015276.m #16	ENSGT00940000156882.i #17	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00390000004553.u #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447 #33	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000159094 #37	ENSGT00940000156307.b	ENSGT00390000012547.b
Canis_lupus	DUPLICATION
Canis_lupus	ANCESTRAL SPECIES	32	ENSGT00940000154044.a.b	ENSGT00940000155400.B	ENSGT00390000000539 #7	ENSGT00940000155890 #8	ENSGT00940000158542 #9	ENSGT00940000167978	ENSGT00940000157608 #12	ENSGT00940000158179 #13	ENSGT00940000153239.A #14	ENSGT00390000015276.m #16	ENSGT00940000156882.i.a #17	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00390000004553.u #20	ENSGT00940000157295 #21	ENSGT00940000156532.m #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00940000154695 #26	ENSGT01030000235022.a.b	ENSGT00940000157192 #27	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447 #33	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000159094 #37	ENSGT00940000156307.b
Dog	MODERN SPECIES	30	RUFY4 (ENSCAFG00845026363)	TNS1 (ENSCAFG00845025209)	TNP1 (ENSCAFG00845025043) #7	IGFBP5 (ENSCAFG00845024936) #8	IGFBP2 (ENSCAFG00845024863) #9	RPL37A (ENSCAFG00845024724)	SMARCAL1 (ENSCAFG00845024403) #12	MARCHF4 (ENSCAFG00845024325) #13	XRCC5 (ENSCAFG00845023719) #14	TMEM169 (ENSCAFG00845023607) #16	PECR (ENSCAFG00845023539) #17	MREG (ENSCAFG00845023465) #18	FN1 (ENSCAFG00845021985) #19	ATIC (ENSCAFG00845021597) #20	ABCA12 (ENSCAFG00845020774) #21	ENSCAFG00845020407 #22	VWC2L (ENSCAFG00845020176) #23	SPAG16 (ENSCAFG00845020068)	IKZF2 (ENSCAFG00845019777) #24	ERBB4 (ENSCAFG00845018700) #26	ENSCAFG00845018409	ENSCAFG00845018381	LANCL1 (ENSCAFG00845018274) #28	CPS1 (ENSCAFG00845017752) #27	MYL1 (ENSCAFG00845017241) #29	ENSCAFG00845017145	ACADL (ENSCAFG00845017093) #31	KANSL1L (ENSCAFG00845016965) #32	RPE (ENSCAFG00845016841) #33	ENSCAFG00845026723	UNC80 (ENSCAFG00845024595) #34
Dingo	MODERN SPECIES	398	ENSCAFG00020027115	ENSCAFG00020027127	TNP1 (ENSCAFG00020027140) #7	IGFBP5 (ENSCAFG00020027142) #8	IGFBP2 (ENSCAFG00020027144) #9	ENSCAFG00020027145	SMARCAL1 (ENSCAFG00020027146) #12	MARCHF4 (ENSCAFG00020027147) #13	XRCC5 (ENSCAFG00020027148) #14	ENSCAFG00020027149 #16	ENSCAFG00020027150 #17	MREG (ENSCAFG00020027154) #18	FN1 (ENSCAFG00020027194) #19	ENSCAFG00020027231 #20	ABCA12 (ENSCAFG00020027288) #21	ENSCAFG00020027297 #22	VWC2L (ENSCAFG00020027301) #23	ENSCAFG00020027302	IKZF2 (ENSCAFG00020027304) #24	ERBB4 (ENSCAFG00020027318) #26	ENSCAFG00020027327	CPS1 (ENSCAFG00020027329) #27	LANCL1 (ENSCAFG00020027334) #28	MYL1 (ENSCAFG00020027336) #29	ACADL (ENSCAFG00020027340) #31	KANSL1L (ENSCAFG00020027344) #32	ENSCAFG00020027348 #33	UNC80 (ENSCAFG00020027361) #34	MAP2 (ENSCAFG00020027372) #35	ENSCAFG00020027373 #36	PTH2R (ENSCAFG00020027375) #37
Canis_lupus	ANCESTRAL SPECIES	8	ENSGT00940000162840.C	ENSGT00940000162524.A	ENSGT00940000165763	ENSGT00940000153130.a.a.a.c.b	ENSGT00900000140957.A.b	ENSGT00940000153130.a.b.a.b	ENSGT00950000184977	ENSGT00940000163717	ENSGT00900000140957.A.a.b	ENSGT00940000153073.b.b.b.b.o.c	ENSGT00940000163708	ENSGT00940000163052	ENSGT00940000153073.b.b.b.b.o.d	ENSGT00940000153130.a.a.b	ENSGT00940000163906	ENSGT00940000156532.n #22	ENSGT00900000140957.A.a.a.w.b	ENSGT00940000154455.b.i.a.a.b.a	ENSGT00940000154455.b.i.a.b.a	ENSGT00900000140957.A.a.a.w.a.b.a	ENSGT00900000140957.A.a.a.w.a.a.b.b	ENSGT00940000154455.b.j.b.a	ENSGT00940000154455.b.i.a.b.b	ENSGT00940000159469.a.a	ENSGT00900000140957.A.a.a.w.a.a.b.a	ENSGT00940000154455.b.j.a	ENSGT00900000140957.A.a.a.x.a	ENSGT00940000154455.b.i.b.a	ENSGT00900000140957.A.a.a.w.a.b.b	ENSGT00940000154455.b.i.a.a.a	ENSGT00900000140957.A.a.a.x.b
Dingo	MODERN SPECIES	161	ENSCAFG00020007919	TRAV34 (ENSCAFG00020007927)	ENSCAFG00020007960	ENSCAFG00020007962	TRAV29DV5 (ENSCAFG00020007963)	ENSCAFG00020007964	ENSCAFG00020007967	ENSCAFG00020007969	ENSCAFG00020007974	ENSCAFG00020007976	TRAV21 (ENSCAFG00020007979)	ENSCAFG00020007981	ENSCAFG00020007982	ENSCAFG00020007984	TRAV10 (ENSCAFG00020007986)	ENSCAFG00020007994 #22	ENSCAFG00020008001	ENSCAFG00020008009	ENSCAFG00020008019	ENSCAFG00020008021	ENSCAFG00020008024	ENSCAFG00020008036	ENSCAFG00020008043	ENSCAFG00020008046	ENSCAFG00020008056	ENSCAFG00020008061	ENSCAFG00020008064	ENSCAFG00020008066	ENSCAFG00020008072	ENSCAFG00020008080	ENSCAFG00020008083
Dog	MODERN SPECIES	36	ENSCAFG00845001612	ENSCAFG00845001603	ENSCAFG00845001593	TRAV34 (ENSCAFG00845001585)	TRAV26-2 (ENSCAFG00845001576)	ENSCAFG00845001567	TRAV29DV5 (ENSCAFG00845001559)	ENSCAFG00845001543	ENSCAFG00845001533	TRAV24 (ENSCAFG00845001524)	ENSCAFG00845001516	ENSCAFG00845001508	TRAV21 (ENSCAFG00845001499)	ENSCAFG00845001490	ENSCAFG00845001473	ENSCAFG00845023473 #22	ENSCAFG00845023410	ENSCAFG00845023380	ENSCAFG00845023334	ENSCAFG00845023303	ENSCAFG00845023257	ENSCAFG00845023233	ENSCAFG00845023209	ENSCAFG00845023134	ENSCAFG00845023113	ENSCAFG00845023083	ENSCAFG00845023042	ENSCAFG00845023022	ENSCAFG00845022989	ENSCAFG00845022956	ENSCAFG00845022920
Red fox	MODERN SPECIES	39	TNS1 (ENSVVUG00000007426)	TNP1 (ENSVVUG00000007592) #7	IGFBP5 (ENSVVUG00000007604) #8	IGFBP2 (ENSVVUG00000007623) #9	ENSVVUG00000007642	SMARCAL1 (ENSVVUG00000007658) #12	MARCH4 (ENSVVUG00000007709) #13	XRCC5 (ENSVVUG00000007761) #14	TMEM169 (ENSVVUG00000008962) #16	ENSVVUG00000008964 #17	MREG (ENSVVUG00000008966) #18	ENSVVUG00000008967	FN1 (ENSVVUG00000008974) #19	ATIC (ENSVVUG00000008989) #20	ABCA12 (ENSVVUG00000009005) #21	BARD1 (ENSVVUG00000009080) #22	VWC2L (ENSVVUG00000009113) #23	ENSVVUG00000009126	IKZF2 (ENSVVUG00000009142) #24	ERBB4 (ENSVVUG00000009194) #26	ENSVVUG00000009222	CPS1 (ENSVVUG00000009235) #27	LANCL1 (ENSVVUG00000009273) #28	ENSVVUG00000009278	MYL1 (ENSVVUG00000009295) #29	ACADL (ENSVVUG00000009345) #31	KANSL1L (ENSVVUG00000009477) #32	RPE (ENSVVUG00000009490) #33	UNC80 (ENSVVUG00000009630) #34	MAP2 (ENSVVUG00000009866) #35	PTH2R (ENSVVUG00000009949) #37
Felidae	ANCESTRAL SPECIES	15	ENSGT00940000154044.a.b	ENSGT00940000155400.B	ENSGT00390000000539 #7	ENSGT00940000155890 #8	ENSGT00940000158542 #9	ENSGT00390000016988.a.b ##11	ENSGT00940000157608 #12	ENSGT00940000158179 #13	ENSGT00940000153239.A #14	ENSGT00390000015276 #16	ENSGT00940000156882 #17	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00390000004553.w #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447 #33	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000158720.c.b.`b #36	ENSGT00940000159094 #37	ENSGT00940000156307.b
Panthera	ANCESTRAL SPECIES	9	ENSGT00940000154044.a.b	ENSGT00940000155400.B	ENSGT00390000000539 #7	ENSGT00940000155890 #8	ENSGT00940000158542 #9	ENSGT00390000016988.a.b ##11	ENSGT00940000157608 #12	ENSGT00940000158179 #13	ENSGT00940000153239.A #14	ENSGT00390000015276 #16	ENSGT00940000156882 #17	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00390000004553.w #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447 #33	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000158720.c.b.`b #36	ENSGT00940000159094 #37	ENSGT00940000156307.b
Panthera_a	ANCESTRAL SPECIES	6	ENSGT00940000154044.a.b	ENSGT00940000155400.B	ENSGT00390000000539 #7	ENSGT00940000155890 #8	ENSGT00940000158542 #9	ENSGT00390000016988.a.b ##11	ENSGT00940000157608 #12	ENSGT00940000158179 #13	ENSGT00940000153239.A #14	ENSGT00390000015276 #16	ENSGT00940000156882 #17	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00390000004553.w #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447 #33	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000159094 #37	ENSGT00940000156307.b	ENSGT00390000012547.b
leopard	MODERN SPECIES	12	TNS1 (ENSPPRG00000016737)	TNP1 (ENSPPRG00000013133) #7	IGFBP5 (ENSPPRG00000013098) #8	IGFBP2 (ENSPPRG00000012975) #9	RPL37A (ENSPPRG00000012681) ##11	SMARCAL1 (ENSPPRG00000012487) #12	MARCHF4 (ENSPPRG00000011970) #13	XRCC5 (ENSPPRG00000011769) #14	TMEM169 (ENSPPRG00000010457) #16	ENSPPRG00000010418 #17	ENSPPRG00000010384 #17	MREG (ENSPPRG00000010221) #18	FN1 (ENSPPRG00000009716) #19	ENSPPRG00000002551 #20	ABCA12 (ENSPPRG00000002284) #21	BARD1 (ENSPPRG00000000936) #22	VWC2L (ENSPPRG00000000428) #23	SPAG16 (ENSPPRG00000000338)	IKZF2 (ENSPPRG00000022962) #24	ERBB4 (ENSPPRG00000021619) #26	CPS1 (ENSPPRG00000017782) #27	LANCL1 (ENSPPRG00000014545) #28	MYL1 (ENSPPRG00000014175) #29	ACADL (ENSPPRG00000014114) #31	KANSL1L (ENSPPRG00000013126) #32	ENSPPRG00000012984 #33	UNC80 (ENSPPRG00000012259) #34	MAP2 (ENSPPRG00000010961) #35	ENSPPRG00000009415 #36	PTH2R (ENSPPRG00000009093) #37	PIKFYVE (ENSPPRG00000008871)
lion	MODERN SPECIES	8	TNS1 (ENSPLOG00000021451)	ENSPLOG00000021740	TNP1 (ENSPLOG00000021749) #7	IGFBP5 (ENSPLOG00000021770) #8	IGFBP2 (ENSPLOG00000021792) #9	RPL37A (ENSPLOG00000021827) ##11	SMARCAL1 (ENSPLOG00000021859) #12	MARCHF4 (ENSPLOG00000022004) #13	XRCC5 (ENSPLOG00000022030) #14	TMEM169 (ENSPLOG00000022080) #16	PECR (ENSPLOG00000022096) #17	MREG (ENSPLOG00000022108) #18	FN1 (ENSPLOG00000022449) #19	ATIC (ENSPLOG00000022715) #20	ABCA12 (ENSPLOG00000022719) #21	BARD1 (ENSPLOG00000022720) #22	ENSPLOG00000022721	VWC2L (ENSPLOG00000022722) #23	SPAG16 (ENSPLOG00000022723)	IKZF2 (ENSPLOG00000022726) #24	ERBB4 (ENSPLOG00000022728) #26	CPS1 (ENSPLOG00000022730) #27	LANCL1 (ENSPLOG00000022731) #28	MYL1 (ENSPLOG00000022732) #29	ACADL (ENSPLOG00000005365) #31	KANSL1L (ENSPLOG00000005446) #32	ENSPLOG00000005504 #33	UNC80 (ENSPLOG00000005686) #34	MAP2 (ENSPLOG00000006126) #35	ENSPLOG00000006284 #36	ENSPLOG00000006368 ##36
Tiger	MODERN SPECIES	240	RUFY4 (ENSPTIG00000016982)	TNS1 (ENSPTIG00000004935)	TNP1 (ENSPTIG00000003475) #7	IGFBP5 (ENSPTIG00000001085) #8	IGFBP2 (ENSPTIG00000022009) #9	RPL37A (ENSPTIG00000021853) ##11	SMARCAL1 (ENSPTIG00000020732) #12	MARCHF4 (ENSPTIG00000020170) #13	XRCC5 (ENSPTIG00000016510) #14	TMEM169 (ENSPTIG00000015999) #16	PECR (ENSPTIG00000015470) #17	MREG (ENSPTIG00000014793) #18	FN1 (ENSPTIG00000019902) #19	ATIC (ENSPTIG00000015356) #20	ABCA12 (ENSPTIG00000006592) #21	BARD1 (ENSPTIG00000002607) #22	VWC2L (ENSPTIG00000022118) #23	SPAG16 (ENSPTIG00000022030)	IKZF2 (ENSPTIG00000021209) #24	ERBB4 (ENSPTIG00000007031) #26	CPS1 (ENSPTIG00000013483) #27	LANCL1 (ENSPTIG00000012768) #28	MYL1 (ENSPTIG00000012214) #29	ACADL (ENSPTIG00000009876) #31	KANSL1L (ENSPTIG00000004021) #32	ENSPTIG00000020548 #33	UNC80 (ENSPTIG00000017745) #34	MAP2 (ENSPTIG00000011771) #35	PTH2R (ENSPTIG00000010836) #37
Cat	MODERN SPECIES	239	RUFY4 (ENSFCAG00000002367)	TNS1 (ENSFCAG00000001073)	TNP1 (ENSFCAG00000036860) #7	IGFBP5 (ENSFCAG00000021980) #8	IGFBP2 (ENSFCAG00000004465) #9	ENSFCAG00000037481 ##11	SMARCAL1 (ENSFCAG00000009377) #12	MARCHF4 (ENSFCAG00000009376) #13	XRCC5 (ENSFCAG00000019248) #14	TMEM169 (ENSFCAG00000038551) #16	PECR (ENSFCAG00000029466) #17	MREG (ENSFCAG00000042915) #18	FN1 (ENSFCAG00000009217) #19	ATIC (ENSFCAG00000009216) #20	ABCA12 (ENSFCAG00000009215) #21	BARD1 (ENSFCAG00000010312) #22	VWC2L (ENSFCAG00000015156) #23	ENSFCAG00000034149	ENSFCAG00000032010	SPAG16 (ENSFCAG00000015155)	ENSFCAG00000048148	IKZF2 (ENSFCAG00000036602) #24	ERBB4 (ENSFCAG00000027902) #26	CPS1 (ENSFCAG00000027460) #27	LANCL1 (ENSFCAG00000023129) #28	MYL1 (ENSFCAG00000036039) #29	ACADL (ENSFCAG00000024046) #31	KANSL1L (ENSFCAG00000027585) #32	ENSFCAG00000009135 #33	UNC80 (ENSFCAG00000031298) #34	MAP2 (ENSFCAG00000024249) #35
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00940000156532 #22
Hedgehog	MODERN SPECIES	3597																BARD1 (ENSEEUG00000005440) #22
Common shrew	MODERN SPECIES	2715																ENSSARG00000012409 #22
Atlantogenata	ANCESTRAL SPECIES	9	ENSGT00940000154044.a.b	ENSGT00940000155400.B	ENSGT00390000000539 #7	ENSGT00940000155890 #8	ENSGT00940000158542 #9	ENSGT00390000016988.b #11	ENSGT00940000157608 #12	ENSGT00940000158179 #13	ENSGT00940000153239.A #14	ENSGT00390000015276 #16	ENSGT00940000156882 #17	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447 #33	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000159094 #37	ENSGT00940000156307.b	ENSGT00390000012547.b
Afrotheria	ANCESTRAL SPECIES	1	ENSGT00940000154044.a.b	ENSGT00940000155400.B	ENSGT00390000000539 #7	ENSGT00940000155890 #8	ENSGT00940000158542 #9	ENSGT00390000016988.b #11	ENSGT00940000157608 #12	ENSGT00940000158179 #13	ENSGT00940000153239.A #14	ENSGT00390000015276 #16	ENSGT00940000156882 #17	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447 #33	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000159094 #37	ENSGT00940000156307.b	ENSGT00390000012547.b
Afrotheria_a	ANCESTRAL SPECIES	1	ENSGT00940000154044.a.b	ENSGT00940000155400.B	ENSGT00390000000539 #7	ENSGT00940000155890 #8	ENSGT00940000158542 #9	ENSGT00390000016988.b #11	ENSGT00940000157608 #12	ENSGT00940000158179 #13	ENSGT00940000153239.A #14	ENSGT00390000015276 #16	ENSGT00940000156882 #17	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447 #33	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000159094 #37	ENSGT00940000156307.b	ENSGT00390000012547.b
Elephant	MODERN SPECIES	301	TNS1 (ENSLAFG00000000579)	TNP1 (ENSLAFG00000032172) #7	ENSLAFG00000030968	IGFBP5 (ENSLAFG00000027482) #8	IGFBP2 (ENSLAFG00000028294) #9	ENSLAFG00000006849 #11	SMARCAL1 (ENSLAFG00000006842) #12	MARCHF4 (ENSLAFG00000010549) #13	XRCC5 (ENSLAFG00000010544) #14	TMEM169 (ENSLAFG00000010543) #16	PECR (ENSLAFG00000001417) #17	MREG (ENSLAFG00000018636) #18	FN1 (ENSLAFG00000016024) #19	ATIC (ENSLAFG00000002520) #20	ABCA12 (ENSLAFG00000005158) #21	BARD1 (ENSLAFG00000000546) #22	VWC2L (ENSLAFG00000010991) #23	ENSLAFG00000010985	IKZF2 (ENSLAFG00000008236) #24	ENSLAFG00000032609 #26	ENSLAFG00000030559 #26	ENSLAFG00000006617 #26	CPS1 (ENSLAFG00000005505) #27	LANCL1 (ENSLAFG00000018697) #28	MYL1 (ENSLAFG00000005451) #29	ACADL (ENSLAFG00000015099) #31	KANSL1L (ENSLAFG00000014134) #32	ENSLAFG00000014127 #33	UNC80 (ENSLAFG00000008065) #34	MAP2 (ENSLAFG00000027965) #35	PTH2R (ENSLAFG00000009988) #37
Hyrax	MODERN SPECIES	2836																BARD1 (ENSPCAG00000015190) #22
Tenrec	MODERN SPECIES	3459																BARD1 (ENSETEG00000009948) #22
Xenarthra	ANCESTRAL SPECIES	462										ENSGT00390000015276 #16	ENSGT00940000156882 #17	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24
Sloth	MODERN SPECIES	3157																BARD1 (ENSCHOG00000005543) #22
Armadillo	MODERN SPECIES	4534										TMEM169 (ENSDNOG00000017604) #16	PECR (ENSDNOG00000011608) #17	ENSDNOG00000031149 #18	FN1 (ENSDNOG00000000626) #19	ATIC (ENSDNOG00000006098) #20	ABCA12 (ENSDNOG00000010676) #21	BARD1 (ENSDNOG00000037382) #22	ENSDNOG00000047897	VWC2L (ENSDNOG00000009235) #23	ENSDNOG00000030608	ENSDNOG00000041597	ENSDNOG00000033836	ENSDNOG00000039194 #24
Marsupialia	ANCESTRAL SPECIES	8	ENSGT00940000154044.a.b	ENSGT00940000155400.B	ENSGT00390000000539 #7	ENSGT00940000155890 #8	ENSGT00940000158542 #9	ENSGT00390000016988.a.b ##11	ENSGT00940000157608 #12	ENSGT00940000158179 #13	ENSGT00940000153239.A #14	ENSGT00390000015276 #16	ENSGT00940000156882 #17	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447 #33	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000159094 #37	ENSGT00940000156307.b	ENSGT00390000012547.b
Marsupialia_b	ANCESTRAL SPECIES	7	ENSGT00940000154044.a.b	ENSGT00940000155400.B	ENSGT00390000000539 #7	ENSGT00940000155890 #8	ENSGT00940000158542 #9	ENSGT00390000016988.a.b ##11	ENSGT00940000157608 #12	ENSGT00940000158179 #13	ENSGT00940000153239.A #14	ENSGT00390000015276 #16	ENSGT00940000156882 #17	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447 #33	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000159094 #37	ENSGT00940000156307.b	ENSGT00390000012547.b
Diprotodontia	ANCESTRAL SPECIES	31	ENSGT00940000155400.B	ENSGT00390000000539 #7	ENSGT00940000155890 #8	ENSGT00940000158542 #9	ENSGT00390000016988.a.b ##11	ENSGT00940000157608 #12	ENSGT00940000158179 #13	ENSGT00940000153239.A #14	ENSGT00940000156882.a #17	ENSGT00390000015276 #16	ENSGT00940000156882.b #17	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447 #33	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000159094 #37	ENSGT00940000156307.b	ENSGT00390000012547.b
Diprotodontia_a	ANCESTRAL SPECIES	30	ENSGT00940000155400.B	ENSGT00390000000539 #7	ENSGT00940000155890 #8	ENSGT00940000158542 #9	ENSGT00390000016988.a.b ##11	ENSGT00940000157608 #12	ENSGT00940000158179 #13	ENSGT00940000153239.A #14	ENSGT00940000156882.a #17	ENSGT00390000015276 #16	ENSGT00940000156882.b #17	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447 #33	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000159094 #37	ENSGT00940000156307.b	ENSGT00390000012547.b
Common wonbat	MODERN SPECIES	1038	ENSVURG00010002744	ENSVURG00010002759	IGFBP5 (ENSVURG00010002789) #8	IGFBP2 (ENSVURG00010002805) #9	RPL37A (ENSVURG00010002818) ##11	SMARCAL1 (ENSVURG00010002845) #12	MARCHF4 (ENSVURG00010002862) #13	XRCC5 (ENSVURG00010002898) #14	ENSVURG00010002961 #17	TMEM169 (ENSVURG00010003001) #16	ENSVURG00010003025 #17	MREG (ENSVURG00010003034) #18	FN1 (ENSVURG00010003070) #19	ATIC (ENSVURG00010003185) #20	ABCA12 (ENSVURG00010003222) #21	BARD1 (ENSVURG00010003327) #22	VWC2L (ENSVURG00010003348) #23	ENSVURG00010003372	ENSVURG00010003388	IKZF2 (ENSVURG00010003422) #24	ERBB4 (ENSVURG00010003549) #26	CPS1 (ENSVURG00010003725) #27	LANCL1 (ENSVURG00010003810) #28	MYL1 (ENSVURG00010003828) #29	ACADL (ENSVURG00010003860) #31	KANSL1L (ENSVURG00010003874) #32	ENSVURG00010003917 #33	UNC80 (ENSVURG00010003993) #34	ENSVURG00010004218 #35	PTH2R (ENSVURG00010004279) #37	ENSVURG00010004334
koala	MODERN SPECIES	98	TNS1 (ENSPCIG00000021440)	TNP1 (ENSPCIG00000029428) #7	IGFBP5 (ENSPCIG00000029430) #8	ENSPCIG00000031078 #9	RPL37A (ENSPCIG00000016481) ##11	SMARCAL1 (ENSPCIG00000022514) #12	MARCHF4 (ENSPCIG00000022525) #13	XRCC5 (ENSPCIG00000007362) #14	ENSPCIG00000008673 #17	TMEM169 (ENSPCIG00000035665) #16	ENSPCIG00000022540 #17	MREG (ENSPCIG00000022546) #18	FN1 (ENSPCIG00000022559) #19	ATIC (ENSPCIG00000008126) #20	ABCA12 (ENSPCIG00000008985) #21	BARD1 (ENSPCIG00000022589) #22	VWC2L (ENSPCIG00000022591) #23
Tasmanian devil	MODERN SPECIES	2	TNP1 (ENSSHAG00000023054) #7	IGFBP5 (ENSSHAG00000028603) #8	IGFBP2 (ENSSHAG00000012420) #9	RPL37A (ENSSHAG00000013417) #11	SMARCAL1 (ENSSHAG00000013538) #12	MARCHF4 (ENSSHAG00000014010) #13	XRCC5 (ENSSHAG00000014688) #14	ENSSHAG00000015328 #17	TMEM169 (ENSSHAG00000000555) #16	ENSSHAG00000001503 #17	MREG (ENSSHAG00000026386) #18	FN1 (ENSSHAG00000009319) #19	ATIC (ENSSHAG00000010108) #20	ENSSHAG00000022770	ABCA12 (ENSSHAG00000011632) #21	BARD1 (ENSSHAG00000012998) #22	VWC2L (ENSSHAG00000014665) #23	ENSSHAG00000025155	ENSSHAG00000004079	IKZF2 (ENSSHAG00000001687) #24	ERBB4 (ENSSHAG00000014078) #26	ENSSHAG00000025581	CPS1 (ENSSHAG00000017472) #27	LANCL1 (ENSSHAG00000021780) #28	MYL1 (ENSSHAG00000017951) #29	ACADL (ENSSHAG00000024844) #31	KANSL1L (ENSSHAG00000001897) #32	ENSSHAG00000025167 #33	UNC80 (ENSSHAG00000029699) #34	MAP2 (ENSSHAG00000008479) #35	ENSSHAG00000003999 #37
Opossum	MODERN SPECIES	6	ENSMODG00000038409	ENSMODG00000015536 #8	IGFBP2 (ENSMODG00000015540) #9	RPL37A (ENSMODG00000039748) ##11	SMARCAL1 (ENSMODG00000015544) #12	MARCHF4 (ENSMODG00000015546) #13	XRCC5 (ENSMODG00000015556) #14	PECR (ENSMODG00000015562) #17	ENSMODG00000029452	TMEM169 (ENSMODG00000037001) #16	MREG (ENSMODG00000015571) #18	ENSMODG00000028517	FN1 (ENSMODG00000015605) #19	ATIC (ENSMODG00000015612) #20	ABCA12 (ENSMODG00000015628) #21	BARD1 (ENSMODG00000015631) #22	VWC2L (ENSMODG00000015633) #23	ENSMODG00000042235	ENSMODG00000008370	ENSMODG00000048388	ENSMODG00000015663	ENSMODG00000025486	IKZF2 (ENSMODG00000015683) #24	ERBB4 (ENSMODG00000015755) #26	ENSMODG00000028496	CPS1 (ENSMODG00000015793) #27	LANCL1 (ENSMODG00000015804) #28	MYL1 (ENSMODG00000015807) #29	ACADL (ENSMODG00000015819) #31	KANSL1L (ENSMODG00000015823) #32	ENSMODG00000015827 #33
Platypus	MODERN SPECIES	18	PIKFYVE (ENSOANG00000008007)	MAP2 (ENSOANG00000007871) #35	UNC80 (ENSOANG00000028875) #34	ENSOANG00000041439 #33	KANSL1L (ENSOANG00000000302) #32	ACADL (ENSOANG00000013488) #31	MYL1 (ENSOANG00000006278) #29	LANCL1 (ENSOANG00000011057) #28	CPS1 (ENSOANG00000011059) #27	ERBB4 (ENSOANG00000007021) #26	ENSOANG00000015675	MREG (ENSOANG00000036014) #18	FN1 (ENSOANG00000006836) #19	ATIC (ENSOANG00000005769) #20	ABCA12 (ENSOANG00000012250) #21	BARD1 (ENSOANG00000048485) #22	VWC2L (ENSOANG00000012633) #23	ENSOANG00000050142	ENSOANG00000029131	IKZF2 (ENSOANG00000009330) #24	SH3BP4 (ENSOANG00000012552)	AGAP1 (ENSOANG00000013415)	GBX2 (ENSOANG00000039901)	ASB18 (ENSOANG00000002384)	ACKR3 (ENSOANG00000003999)	COPS8 (ENSOANG00000047446)	COL6A3 (ENSOANG00000011917)	ENSOANG00000001294	ENSOANG00000014727	RAB17 (ENSOANG00000011498)	ENSOANG00000011499
Sauria	ANCESTRAL SPECIES	32	ENSGT00940000156462.C	ENSGT00940000156462.B	ENSGT00950000183138.a.b	ENSGT00390000005489.a	ENSGT00940000161839	ENSGT00530000063564.b	ENSGT00940000165690	ENSGT00390000016508	ENSGT00940000159224	ENSGT00940000154349	ENSGT00940000163794	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447 #33	ENSGT01030000235330	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000159094 #37	ENSGT00940000156307.b
Archelosauria	ANCESTRAL SPECIES	8	ENSGT00940000156462.C	ENSGT00940000156462.B	ENSGT00950000183138.a.b	ENSGT00390000005489.a	ENSGT00940000161839	ENSGT00530000063564.b	ENSGT00940000165690	ENSGT00390000016508	ENSGT00940000159224	ENSGT00940000154349	ENSGT00940000163794	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00960000189051	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447 #33	ENSGT01030000235330	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000159094 #37
Archosauria	ANCESTRAL SPECIES	6	ENSGT01090000260051.b.b	ENSGT00390000000977	ENSGT00940000156462.C	ENSGT00950000183138.a.b	ENSGT00390000005489.a	ENSGT00940000161839	ENSGT00530000063564.b	ENSGT00940000165690	ENSGT00940000159224	ENSGT00940000154349	ENSGT00940000163794	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00960000189051	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447 #33	ENSGT01030000235330	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000159094 #37
Aves	ANCESTRAL SPECIES	8	ENSGT01090000260051.b.b	ENSGT00390000000977	ENSGT00940000156462.C	ENSGT00950000183138.a.b	ENSGT00390000005489.a	ENSGT00940000161839	ENSGT00530000063564.b	ENSGT00940000165690	ENSGT00940000159224	ENSGT00940000154349	ENSGT00940000163794	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00960000189051	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447 #33	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000159094 #37	ENSGT00940000156307.b
Neognathae	ANCESTRAL SPECIES	6	ENSGT00390000000977	ENSGT00940000156462.C	ENSGT00950000183138.a.b	ENSGT00390000005489.a	ENSGT00940000161839	ENSGT00530000063564.b	ENSGT00940000165690	ENSGT00940000159224	ENSGT00940000154349	ENSGT00390000014310	ENSGT00940000163794	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00960000189051	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447 #33	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000160494	ENSGT00390000016619.a
Neognathae_b	ANCESTRAL SPECIES	7	ENSGT00390000000977	ENSGT00940000156462.C	ENSGT00950000183138.a.b	ENSGT00390000005489.a	ENSGT00940000161839	ENSGT00530000063564.b	ENSGT00940000165690	ENSGT00940000159224	ENSGT00940000154349	ENSGT00390000014310	ENSGT00940000163794	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00960000189051	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447 #33	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000160494	ENSGT00390000016619.a
Passeriformes	ANCESTRAL SPECIES	6	ENSGT00940000160596.a.a.b	ENSGT00940000156462.C	ENSGT00950000183138.a.b	ENSGT00390000005489.a	ENSGT00940000161839	ENSGT00530000063564.b	ENSGT00940000165690	ENSGT00940000159224	ENSGT00940000154349	ENSGT00390000014310	ENSGT00940000163794	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00960000189051	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447 #33	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000160494	ENSGT00390000016619.a
Passeriformes_d	ANCESTRAL SPECIES	8	ENSGT00940000156462.C	ENSGT00950000183138.a.b	ENSGT00390000005489.a	ENSGT00940000161839	ENSGT00530000063564.b	ENSGT00940000165690	ENSGT00940000159224	ENSGT00940000154349	ENSGT00960000189419	ENSGT00390000014310	ENSGT00940000163794	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00960000189051	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447 #33	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000160494	ENSGT00390000016619.a
Passeriformes_g	ANCESTRAL SPECIES	9	ENSGT00940000156462.C	ENSGT00950000183138.a.b	ENSGT00390000005489.a	ENSGT00940000161839	ENSGT00530000063564.b	ENSGT00940000177452	ENSGT00940000159224	ENSGT00940000154349	ENSGT00960000189419	ENSGT00390000014310	ENSGT00940000163794	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00960000189051	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447 #33	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000160494	ENSGT00390000016619.a
Medium ground finch	DUPLICATION
Medium ground finch	MODERN SPECIES	210				COL6A3 (ENSGFOG00000012948)	MLPH (ENSGFOG00000012976)	ENSGFOG00000012982	RAB17 (ENSGFOG00000012985)	LRRFIP1 (ENSGFOG00000012997)	UBE2F (ENSGFOG00000013028)	ENSGFOG00000013036	ENSGFOG00000013046	MREG (ENSGFOG00000013048) #18	FN1 (ENSGFOG00000013058) #19	ATIC (ENSGFOG00000013117) #20	ABCA12 (ENSGFOG00000013179) #21	ENSGFOG00000013222 #22	ENSGFOG00000013224 #22	VWC2L (ENSGFOG00000013225) #23	SPAG16 (ENSGFOG00000013227)
Medium ground finch	MODERN SPECIES	210			COL6A3 (ENSGFOG00000012948)	MLPH (ENSGFOG00000012976)	ENSGFOG00000012982	RAB17 (ENSGFOG00000012985)	LRRFIP1 (ENSGFOG00000012997)	UBE2F (ENSGFOG00000013028)	ENSGFOG00000013036	ENSGFOG00000013046	MREG (ENSGFOG00000013048) #18	FN1 (ENSGFOG00000013058) #19	ATIC (ENSGFOG00000013117) #20	ABCA12 (ENSGFOG00000013179) #21	ENSGFOG00000013222 #22	ENSGFOG00000013224 #22	VWC2L (ENSGFOG00000013225) #23	SPAG16 (ENSGFOG00000013227)
Passeroidea	ANCESTRAL SPECIES	8	ENSGT00940000160596.a.a.b.a	ENSGT00940000156462.C	ENSGT00950000183138.a.b	ENSGT00390000005489.a	ENSGT00940000161839	ENSGT00530000063564.b	ENSGT00940000177452	ENSGT00940000159224	ENSGT00940000154349	ENSGT00390000014310	ENSGT00940000163794	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00960000189051	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447 #33	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000160494	ENSGT00390000016619.a
Zebra finch	MODERN SPECIES	29	ASB1 (ENSTGUG00000023179)	TRAF3IP1 (ENSTGUG00000003177)	USP40 (ENSTGUG00000003153)	ENSTGUG00000029203	ENSTGUG00000029766	ENSTGUG00000018428	ENSTGUG00000020846	ENSTGUG00000003102	SH3BP4 (ENSTGUG00000003098)	ENSTGUG00000003884	SMC1A (ENSTGUG00000029662)	ENSTGUG00000020568	FN1 (ENSTGUG00000002978) #19	ATIC (ENSTGUG00000002942) #20	ABCA12 (ENSTGUG00000002904) #21	BARD1 (ENSTGUG00000002894) #22	VWC2L (ENSTGUG00000002893) #23	SPAG16 (ENSTGUG00000002887)	IKZF2 (ENSTGUG00000002874) #24	ENSTGUG00000020929
Common canary	MODERN SPECIES	8	COPS8 (ENSSCAG00000008963)	COL6A3 (ENSSCAG00000008871)	MLPH (ENSSCAG00000008835)	PRLH (ENSSCAG00000008829)	RAB17 (ENSSCAG00000008822)	ENSSCAG00000008808	ENSSCAG00000008802	RAMP1 (ENSSCAG00000008799)	UBE2F (ENSSCAG00000008788)	ENSSCAG00000008781	ENSSCAG00000008776	MREG (ENSSCAG00000008744) #18	FN1 (ENSSCAG00000005638) #19	ATIC (ENSSCAG00000004622) #20	ABCA12 (ENSSCAG00000004519) #21	BARD1 (ENSSCAG00000004510) #22	VWC2L (ENSSCAG00000004500) #23	ENSSCAG00000004494	ENSSCAG00000004487	IKZF2 (ENSSCAG00000004479) #24	ERBB4 (ENSSCAG00000004444) #26	CPS1 (ENSSCAG00000004414) #27	ENSSCAG00000004409	LANCL1 (ENSSCAG00000004404) #28	MYL1 (ENSSCAG00000004398) #29	ACADL (ENSSCAG00000004392) #31	KANSL1L (ENSSCAG00000004376) #32	ENSSCAG00000004371 #33	UNC80 (ENSSCAG00000004263) #34	ENSSCAG00000004229 ##35	ENSSCAG00000004208 #35
Flycatcher	MODERN SPECIES	26	COPS8 (ENSFALG00000026238)	COL6A3 (ENSFALG00000012704)	MLPH (ENSFALG00000012767)	PRLH (ENSFALG00000027013)	RAB17 (ENSFALG00000012783)	LRRFIP1 (ENSFALG00000028055)	ENSFALG00000023851	RAMP1 (ENSFALG00000025699)	ENSFALG00000012804	ENSFALG00000012817	ENSFALG00000012826	MREG (ENSFALG00000012834) #18	FN1 (ENSFALG00000012845) #19	ATIC (ENSFALG00000012874) #20	ABCA12 (ENSFALG00000012901) #21	BARD1 (ENSFALG00000012920) #22	VWC2L (ENSFALG00000012931) #23	SPAG16 (ENSFALG00000012936)	IKZF2 (ENSFALG00000012948) #24	ERBB4 (ENSFALG00000012969) #26	CPS1 (ENSFALG00000013028) #27	ENSFALG00000027439	LANCL1 (ENSFALG00000013076) #28	MYL1 (ENSFALG00000013083) #29	ACADL (ENSFALG00000013095) #31	KANSL1L (ENSFALG00000013107) #32	ENSFALG00000013112 #33	UNC80 (ENSFALG00000013122) #34	MAP2 (ENSFALG00000024297) #35	FRZB (ENSFALG00000013151)	NCKAP1 (ENSFALG00000013164)
Great tit	MODERN SPECIES	27	COL6A3 (ENSPMJG00000006699)	MLPH (ENSPMJG00000006731)	PRLH (ENSPMJG00000006757)	RAB17 (ENSPMJG00000006759)	LRRFIP1 (ENSPMJG00000006762)	ENSPMJG00000006782	RAMP1 (ENSPMJG00000006785)	UBE2F (ENSPMJG00000006786)	ENSPMJG00000006792	ENSPMJG00000006799	MREG (ENSPMJG00000006864) #18	FN1 (ENSPMJG00000006873) #19	ATIC (ENSPMJG00000006902) #20	ENSPMJG00000006908	ABCA12 (ENSPMJG00000006911) #21	BARD1 (ENSPMJG00000006924) #22	VWC2L (ENSPMJG00000006927) #23	SPAG16 (ENSPMJG00000006964)	IKZF2 (ENSPMJG00000006973) #24	ENSPMJG00000006993	ERBB4 (ENSPMJG00000007008) #26	CPS1 (ENSPMJG00000007044) #27	LANCL1 (ENSPMJG00000007791) #28	MYL1 (ENSPMJG00000007793) #29	ACADL (ENSPMJG00000007795) #31	KANSL1L (ENSPMJG00000007796) #32	ENSPMJG00000007800 #33	UNC80 (ENSPMJG00000007818) #34	MAP2 (ENSPMJG00000007838) #35	FRZB (ENSPMJG00000007853)	NCKAP1 (ENSPMJG00000007857)
Neognathae_c	ANCESTRAL SPECIES	9	ENSGT01090000260051.b.b	ENSGT00390000000977	ENSGT00940000156462.C	ENSGT00950000183138.a.b	ENSGT00390000005489.a	ENSGT00940000161839	ENSGT00530000063564.b	ENSGT00940000159224	ENSGT00940000154349	ENSGT00390000014310	ENSGT00940000163794	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00960000189051	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447 #33	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000160494	ENSGT00390000016619.a
Kakapo	DUPLICATION
Kakapo	MODERN SPECIES	22	ZNF804A (ENSSHBG00005020501)	NUP35 (ENSSHBG00005020510)	DUSP19 (ENSSHBG00005020518)	NCKAP1 (ENSSHBG00005020521)	FRZB (ENSSHBG00005020525)	RAMP1 (ENSSHBG00005020526)	UBE2F (ENSSHBG00005020530)	ENSSHBG00005020534	ENSSHBG00005000192	ENSSHBG00005000202	MREG (ENSSHBG00005000212) #18	FN1 (ENSSHBG00005000531) #19	ATIC (ENSSHBG00005000641) #20	ABCA12 (ENSSHBG00005000642) #21	ENSSHBG00005000643 #22	ENSSHBG00005000645 #22	VWC2L (ENSSHBG00005000646) #23	SPAG16 (ENSSHBG00005000647)	IKZF2 (ENSSHBG00005000648) #24	ENSSHBG00005020164	ENSSHBG00005020192	PAOX (ENSSHBG00005020246)	MTG1 (ENSSHBG00005020254)	ECHS1 (ENSSHBG00005020259)	ENSSHBG00005020262	ZNF511 (ENSSHBG00005020265)	ENSSHBG00005020269	ADAM8 (ENSSHBG00005020273)	ERLIN1 (ENSSHBG00005020279)	CHUK (ENSSHBG00005020303)	CWF19L1 (ENSSHBG00005020349)
Kakapo	MODERN SPECIES	22	ENSSHBG00005020497	ZNF804A (ENSSHBG00005020501)	NUP35 (ENSSHBG00005020510)	DUSP19 (ENSSHBG00005020518)	NCKAP1 (ENSSHBG00005020521)	FRZB (ENSSHBG00005020525)	RAMP1 (ENSSHBG00005020526)	UBE2F (ENSSHBG00005020530)	ENSSHBG00005020534	ENSSHBG00005000192	ENSSHBG00005000202	MREG (ENSSHBG00005000212) #18	FN1 (ENSSHBG00005000531) #19	ATIC (ENSSHBG00005000641) #20	ABCA12 (ENSSHBG00005000642) #21	ENSSHBG00005000643 #22	ENSSHBG00005000645 #22	VWC2L (ENSSHBG00005000646) #23	SPAG16 (ENSSHBG00005000647)	IKZF2 (ENSSHBG00005000648) #24	ENSSHBG00005020164	ENSSHBG00005020192	PAOX (ENSSHBG00005020246)	MTG1 (ENSSHBG00005020254)	ECHS1 (ENSSHBG00005020259)	ENSSHBG00005020262	ZNF511 (ENSSHBG00005020265)	ENSSHBG00005020269	ADAM8 (ENSSHBG00005020273)	ERLIN1 (ENSSHBG00005020279)	CHUK (ENSSHBG00005020303)
Golden eagle	MODERN SPECIES	22	COL6A3 (ENSACCG00020014569)	ENSACCG00020014628	MLPH (ENSACCG00020014641)	PRLH (ENSACCG00020014655)	RAB17 (ENSACCG00020014666)	LRRFIP1 (ENSACCG00020014774)	RAMP1 (ENSACCG00020014879)	UBE2F (ENSACCG00020014904)	ENSACCG00020014939	ENSACCG00020014957	MREG (ENSACCG00020014972) #18	ENSACCG00020015012 #19	ENSACCG00020015079 #19	ATIC (ENSACCG00020015119) #20	ABCA12 (ENSACCG00020015186) #21	BARD1 (ENSACCG00020015244) #22	VWC2L (ENSACCG00020015266) #23	SPAG16 (ENSACCG00020015279)	IKZF2 (ENSACCG00020015298) #24	ERBB4 (ENSACCG00020015334) #26	CPS1 (ENSACCG00020015419) #27	ENSACCG00020015465	LANCL1 (ENSACCG00020015474) #28	MYL1 (ENSACCG00020015555) #29	ACADL (ENSACCG00020015590) #31	KANSL1L (ENSACCG00020015606) #32	ENSACCG00020015621 #33	UNC80 (ENSACCG00020015792) #34	MAP2 (ENSACCG00020015943) #35	FRZB (ENSACCG00020015976)	NCKAP1 (ENSACCG00020016001)
Galloanserae	ANCESTRAL SPECIES	7	ENSGT00390000000977	ENSGT00940000156462.C	ENSGT00950000183138.a.b	ENSGT00390000005489.a	ENSGT00940000161839	ENSGT00530000063564.b	ENSGT00940000165690	ENSGT00940000159224	ENSGT00940000154349	ENSGT00390000014310	ENSGT00940000163794	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00960000189051	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447 #33	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000160494	ENSGT00390000016619.a
Anatidae	ANCESTRAL SPECIES	10	ENSGT00390000000977	ENSGT00940000156462.C	ENSGT00950000183138.a.b	ENSGT00390000005489.a	ENSGT00940000161839	ENSGT00530000063564.b	ENSGT00940000165690	ENSGT00940000159224	ENSGT00940000154349	ENSGT00390000014310	ENSGT00940000163794	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00960000189051	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447 #33	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000160494	ENSGT00390000016619.a
Pink-footed goose	MODERN SPECIES	18	COPS8 (ENSABRG00000022248)	COL6A3 (ENSABRG00000022232)	MLPH (ENSABRG00000022201)	PRLH (ENSABRG00000022194)	ENSABRG00000022192	RAB17 (ENSABRG00000022190)	LRRFIP1 (ENSABRG00000022185)	ENSABRG00000022183	RAMP1 (ENSABRG00000022182)	UBE2F (ENSABRG00000022177)	ENSABRG00000022171	MREG (ENSABRG00000022165) #18	FN1 (ENSABRG00000021857) #19	ATIC (ENSABRG00000021637) #20	ABCA12 (ENSABRG00000021521) #21	BARD1 (ENSABRG00000021511) #22	VWC2L (ENSABRG00000021509) #23	SPAG16 (ENSABRG00000021506)	IKZF2 (ENSABRG00000021503) #24	ERBB4 (ENSABRG00000020899) #26	CPS1 (ENSABRG00000020606) #27	LANCL1 (ENSABRG00000020550) #28	MYL1 (ENSABRG00000020537) #29	ACADL (ENSABRG00000020530) #31	KANSL1L (ENSABRG00000020507) #32	ENSABRG00000020485 #33	UNC80 (ENSABRG00000020422) #34	MAP2 (ENSABRG00000020231) #35	FRZB (ENSABRG00000020214)	NCKAP1 (ENSABRG00000020208)	DUSP19 (ENSABRG00000020205)
Duck	MODERN SPECIES	25	COPS8 (ENSAPLG00000016947)	COL6A3 (ENSAPLG00000005511)	MLPH (ENSAPLG00000005150)	PRLH (ENSAPLG00000023643)	RAB17 (ENSAPLG00000004880)	ENSAPLG00000004640	ENSAPLG00000024288	RAMP1 (ENSAPLG00000004363)	ENSAPLG00000004341	ENSAPLG00000012522	ENSAPLG00000012593	MREG (ENSAPLG00000012631) #18	FN1 (ENSAPLG00000012652) #19	ATIC (ENSAPLG00000014306) #20	ABCA12 (ENSAPLG00000014859) #21	BARD1 (ENSAPLG00000015564) #22	VWC2L (ENSAPLG00000015890) #23	SPAG16 (ENSAPLG00000015934)	IKZF2 (ENSAPLG00000001291) #24	ERBB4 (ENSAPLG00000001331) #26	ENSAPLG00000026809	CPS1 (ENSAPLG00000002474) #27	ENSAPLG00000022497	LANCL1 (ENSAPLG00000004144) #28	MYL1 (ENSAPLG00000004615) #29	ACADL (ENSAPLG00000004832) #31	KANSL1L (ENSAPLG00000005351) #32	ENSAPLG00000005752 #33	UNC80 (ENSAPLG00000005783) #34	MAP2 (ENSAPLG00000022767) #35	NCKAP1 (ENSAPLG00000008045)
Phasianidae	ANCESTRAL SPECIES	8	ENSGT00390000000977	ENSGT00940000156462.C	ENSGT00950000183138.a.b	ENSGT00390000005489.a	ENSGT00940000161839	ENSGT00530000063564.b	ENSGT00940000177452	ENSGT00940000159224	ENSGT00940000154349	ENSGT00390000014310	ENSGT00940000163794	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00960000189051	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a.l #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447 #33	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000160494	ENSGT00390000016619.a
Phasianidae_b	ANCESTRAL SPECIES	8	ENSGT00390000000977	ENSGT00940000156462.C	ENSGT00950000183138.a.b	ENSGT00950000185272	ENSGT00940000161839	ENSGT00530000063564.b	ENSGT00940000177452	ENSGT00940000159224	ENSGT00940000154349	ENSGT00390000014310	ENSGT00940000163794	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000157452.s.a.c.a.b	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00960000189051	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a.l #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447 #33	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000160494
Chicken	MODERN SPECIES	36	COL6A3 (ENSGALG00010012362)	MLPH (ENSGALG00010012325)	PRLH (ENSGALG00010012236)	RAB17 (ENSGALG00010012215)	LRRFIP1 (ENSGALG00010012194)	ENSGALG00010012120	UBE2F (ENSGALG00010012100)	IFNL3 (ENSGALG00010012050)	ENSGALG00010012045	IFNL3A (ENSGALG00010012030)	ENSGALG00010012015	MREG (ENSGALG00010012007) #18	FN1 (ENSGALG00010011984) #19	ATIC (ENSGALG00010011965) #20	ABCA12 (ENSGALG00010011949) #21	BARD1 (ENSGALG00010011923) #22	VWC2L (ENSGALG00010011894) #23	ENSGALG00010015237	SPAG16 (ENSGALG00010011850)	IKZF2 (ENSGALG00010011720) #24	ERBB4 (ENSGALG00010011625) #26	LANCL1 (ENSGALG00010011539) #28	MYL1 (ENSGALG00010011505) #29	CPS1 (ENSGALG00010011469) #27	ACADL (ENSGALG00010011424) #31	KANSL1L (ENSGALG00010011412) #32	ENSGALG00010011374 #33	UNC80 (ENSGALG00010011357) #34	MAP2 (ENSGALG00010011321) #35	FRZB (ENSGALG00010011251)	NCKAP1 (ENSGALG00010011212)
Turkey	MODERN SPECIES	27	COL6A3 (ENSMGAG00000002889)	MLPH (ENSMGAG00000003050)	RAB17 (ENSMGAG00000003135)	PRLH (ENSMGAG00000018152)	ENSMGAG00000019302	ENSMGAG00000003145	ENSMGAG00000003218	RAMP1 (ENSMGAG00000003225)	ENSMGAG00000003229	ENSMGAG00000003250	ENSMGAG00000003269	MREG (ENSMGAG00000003298) #18	FN1 (ENSMGAG00000003306) #19	ATIC (ENSMGAG00000003456) #20	ABCA12 (ENSMGAG00000003510) #21	BARD1 (ENSMGAG00000003641) #22	VWC2L (ENSMGAG00000003667) #23	ENSMGAG00000003687	ENSMGAG00000003672	ENSMGAG00000022263	ENSMGAG00000003697 #24	ERBB4 (ENSMGAG00000003739) #26	CPS1 (ENSMGAG00000003847) #27	ENSMGAG00000019418	LANCL1 (ENSMGAG00000004068) #28	MYL1 (ENSMGAG00000004000) #29	ACADL (ENSMGAG00000004045) #31	KANSL1L (ENSMGAG00000004128) #32	ENSMGAG00000020115 #33	UNC80 (ENSMGAG00000004158) #34	ENSMGAG00000004244 #35
Japanese quail	MODERN SPECIES	25	MOB4 (ENSCJPG00005014148)	ENSCJPG00005014146	COL6A3 (ENSCJPG00005014145)	MLPH (ENSCJPG00005014101)	PRLH (ENSCJPG00005014089)	RAB17 (ENSCJPG00005014087)	LRRFIP1 (ENSCJPG00005014059)	RAMP1 (ENSCJPG00005014050)	UBE2F (ENSCJPG00005014047)	ENSCJPG00005014041	ENSCJPG00005014038	MREG (ENSCJPG00005014036) #18	FN1 (ENSCJPG00005014024) #19	ATIC (ENSCJPG00005014023) #20	ABCA12 (ENSCJPG00005014021) #21	BARD1 (ENSCJPG00005014019) #22	VWC2L (ENSCJPG00005014018) #23	SPAG16 (ENSCJPG00005014016)	IKZF2 (ENSCJPG00005014015) #24	ERBB4 (ENSCJPG00005014005) #26	CPS1 (ENSCJPG00005013844) #27	LANCL1 (ENSCJPG00005013843) #28	MYL1 (ENSCJPG00005013841) #29	ACADL (ENSCJPG00005013840) #31	KANSL1L (ENSCJPG00005013839) #32	ENSCJPG00005013838 #33	UNC80 (ENSCJPG00005013837) #34	ENSCJPG00005013836 #35	FRZB (ENSCJPG00005013834)	NCKAP1 (ENSCJPG00005013833)	DUSP19 (ENSCJPG00005013832)
African ostrich	MODERN SPECIES	1071															ABCA12 (ENSSCUG00000013363) #21	BARD1 (ENSSCUG00000013356) #22	VWC2L (ENSSCUG00000013355) #23	SPAG16 (ENSSCUG00000013354)	IKZF2 (ENSSCUG00000013350) #24	ERBB4 (ENSSCUG00000013317) #26	CPS1 (ENSSCUG00000013255) #27	LANCL1 (ENSSCUG00000013218) #28	MYL1 (ENSSCUG00000013213) #29	ACADL (ENSSCUG00000013211) #31	KANSL1L (ENSSCUG00000013205) #32	ENSSCUG00000013202 #33	UNC80 (ENSSCUG00000013197) #34	MAP2 (ENSSCUG00000013191) #35	PTH2R (ENSSCUG00000013187) #37	PIKFYVE (ENSSCUG00000013177)	IDH1 (ENSSCUG00000013175)
Australian saltwater crocodile	MODERN SPECIES	66	TRAF3IP1 (ENSCPRG00005005553)	ASB1 (ENSCPRG00005005514)	ENSCPRG00005005465	TWIST2 (ENSCPRG00005005461)	HDAC4 (ENSCPRG00005005400)	NDUFA10 (ENSCPRG00005005367)	ENSCPRG00005005355	ENSCPRG00005005331	ENSCPRG00005005317	ENSCPRG00005005314	ENSCPRG00005005309	MREG (ENSCPRG00005005306) #18	FN1 (ENSCPRG00005003637) #19	ATIC (ENSCPRG00005003393) #20	ABCA12 (ENSCPRG00005003342) #21	BARD1 (ENSCPRG00005003336) #22	VWC2L (ENSCPRG00005003332) #23	ENSCPRG00005003324	ENSCPRG00005003312	ENSCPRG00005003294	IKZF2 (ENSCPRG00005003290) #24	ERBB4 (ENSCPRG00005003197) #26	CPS1 (ENSCPRG00005002612) #27	LANCL1 (ENSCPRG00005002510) #28	MYL1 (ENSCPRG00005002506) #29	ACADL (ENSCPRG00005002494) #31	KANSL1L (ENSCPRG00005002482) #32	ENSCPRG00005002478 #33	ENSCPRG00005002476	UNC80 (ENSCPRG00005002350) #34	ENSCPRG00005002217 #35
Cryptodira	ANCESTRAL SPECIES	5	ENSGT00940000156462.B	ENSGT00950000183138.a.b	ENSGT00390000005489.a	ENSGT00940000161839	ENSGT00530000063564.b	ENSGT00390000016508	ENSGT00940000159224	ENSGT00940000154349	ENSGT00520000055666.b	ENSGT00390000014310.b	ENSGT00940000163794	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00960000189051	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447 #33	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000159094 #37	ENSGT00940000156307.b
Testudinoidea	ANCESTRAL SPECIES	11	ENSGT00950000183138.a.b	ENSGT00390000005489.a	ENSGT00940000161839	ENSGT00530000063564.b	ENSGT00390000016508	ENSGT00940000159224	ENSGT00940000154349	ENSGT00520000055666.b	ENSGT00390000014310.b.b	ENSGT00390000014310.a	ENSGT00940000163794	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00960000189051	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447 #33	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000159094 #37	ENSGT00940000156307.b
Emydidae	ANCESTRAL SPECIES	4										ENSGT00390000014310.a	ENSGT00940000163794	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447 #33	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000159094 #37	ENSGT00940000156307.b	ENSGT00390000012547.b
painted turtle	DUPLICATION
painted turtle	MODERN SPECIES	1596																ENSCPBG00000004972 #22
painted turtle	MODERN SPECIES	1066																ENSCPBG00000011799 #22	VWC2L (ENSCPBG00000011780) #23	ENSCPBG00000011770
Three-toed box turtle	MODERN SPECIES	25												MREG (ENSTMTG00000003191) #18	FN1 (ENSTMTG00000003016) #19	ATIC (ENSTMTG00000002987) #20	ABCA12 (ENSTMTG00000002947) #21	BARD1 (ENSTMTG00000002934) #22	VWC2L (ENSTMTG00000002929) #23	ENSTMTG00000002921	ENSTMTG00000002912	IKZF2 (ENSTMTG00000002878) #24	ERBB4 (ENSTMTG00000002803) #26	CPS1 (ENSTMTG00000002766) #27	LANCL1 (ENSTMTG00000002758) #28	MYL1 (ENSTMTG00000002746) #29	ACADL (ENSTMTG00000002733) #31	KANSL1L (ENSTMTG00000002723) #32	ENSTMTG00000002718 #33	UNC80 (ENSTMTG00000002568) #34	ENSTMTG00000002484 #35	PTH2R (ENSTMTG00000002463) #37	PIKFYVE (ENSTMTG00000001522)
Testudinidae	ANCESTRAL SPECIES	8					ENSGT00940000159224	ENSGT00940000154349	ENSGT00520000055666.b	ENSGT00390000014310.b.b.a	ENSGT00390000014310.a	ENSGT00940000163794.bb	ENSGT00940000163794.cb	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00960000189051	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447 #33	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000159094 #37	ENSGT00940000156307.b
Goode s thornscrub tortoise	MODERN SPECIES	2	ENSGEVG00005012923	ENSGEVG00005012964	ENSGEVG00005013041	ENSGEVG00005013250	RAMP1 (ENSGEVG00005013278)	UBE2F (ENSGEVG00005013338)	SPATC1L (ENSGEVG00005013387)	ENSGEVG00005013545	ENSGEVG00005013598	ENSGEVG00005013629	MREG (ENSGEVG00005013661) #18	ENSGEVG00005013700 #19	ENSGEVG00005013790 #19	ATIC (ENSGEVG00005013845) #20	ABCA12 (ENSGEVG00005013908) #21	BARD1 (ENSGEVG00005014357) #22	VWC2L (ENSGEVG00005014438) #23	ENSGEVG00005014460	ENSGEVG00005014540	IKZF2 (ENSGEVG00005014648) #24	ERBB4 (ENSGEVG00005015015) #26	CPS1 (ENSGEVG00005015920) #27	ENSGEVG00005016107	LANCL1 (ENSGEVG00005016202) #28	MYL1 (ENSGEVG00005016236) #29	ACADL (ENSGEVG00005016296) #31	KANSL1L (ENSGEVG00005016332) #32	ENSGEVG00005016355 #33	UNC80 (ENSGEVG00005004294) #34	ENSGEVG00005004848 #35	PTH2R (ENSGEVG00005005111) #37
Abingdon island giant tortoise	MODERN SPECIES	2320					UBE2F (ENSCABG00000021104)	ENSCABG00000021100	ENSCABG00000021098	ENSCABG00000021095	ENSCABG00000021094	ENSCABG00000021092	MREG (ENSCABG00000021090) #18	ENSCABG00000021086	FN1 (ENSCABG00000018238) #19	ATIC (ENSCABG00000018118) #20	ABCA12 (ENSCABG00000018106) #21	BARD1 (ENSCABG00000018074) #22
Chinese turtle	MODERN SPECIES	1375	COL6A3 (ENSPSIG00000017427)	MLPH (ENSPSIG00000017140)	PRLH (ENSPSIG00000017065)	RAB17 (ENSPSIG00000016995)	LRRFIP1 (ENSPSIG00000016774)	ENSPSIG00000016767	RAMP1 (ENSPSIG00000016764)	UBE2F (ENSPSIG00000016759)	ENSPSIG00000016742	ENSPSIG00000016707	ENSPSIG00000016701	MREG (ENSPSIG00000016698) #18	FN1 (ENSPSIG00000015987) #19	ATIC (ENSPSIG00000015711) #20	ABCA12 (ENSPSIG00000015309) #21	BARD1 (ENSPSIG00000015299) #22	VWC2L (ENSPSIG00000015244) #23	ENSPSIG00000015060	ENSPSIG00000001304	ENSPSIG00000015030	IKZF2 (ENSPSIG00000014940) #24	ERBB4 (ENSPSIG00000013711) #26	ENSPSIG00000013508 #27	ENSPSIG00000013503 #27	LANCL1 (ENSPSIG00000013378) #28	MYL1 (ENSPSIG00000013292) #29	ACADL (ENSPSIG00000012661) #31	KANSL1L (ENSPSIG00000012588) #32	ENSPSIG00000012534 #33	UNC80 (ENSPSIG00000010780) #34	MAP2 (ENSPSIG00000010770) #35
Lepidosauria	ANCESTRAL SPECIES	7	ENSGT01090000260051.b.b	ENSGT00390000000977	ENSGT00940000156462.C	ENSGT00950000183138.a.b	ENSGT00390000005489.a	ENSGT00940000161839	ENSGT00530000063564.b	ENSGT00940000165690	ENSGT00940000159224	ENSGT00940000154349	ENSGT00940000163794	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00990000210950	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447 #33	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000159094 #37	ENSGT00940000156307.b
tuatara	DUPLICATION
tuatara	MODERN SPECIES	572														ABCA12 (ENSSPUG00000010159) #21	ENSSPUG00000010144 #22	ENSSPUG00000010124 #22
tuatara	MODERN SPECIES	572															ABCA12 (ENSSPUG00000010159) #21	ENSSPUG00000010144 #22	ENSSPUG00000010124 #22
Episquamata	ANCESTRAL SPECIES		ENSGT00940000159677.c.b.a.b	ENSGT00940000163820	ENSGT00940000157267	ENSGT00720000108822	ENSGT00940000153969.b	ENSGT00940000161996	ENSGT00940000157440	ENSGT00530000063564.b	ENSGT00940000165690	ENSGT00940000159224	ENSGT00940000154349	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00990000210950	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447 #33	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000159094 #37	ENSGT00940000156307.b
Toxicofera	ANCESTRAL SPECIES		ENSGT00940000159677.d	ENSGT00940000157267	ENSGT00720000108822	ENSGT00940000153969.b	ENSGT00940000161996	ENSGT00940000165503	ENSGT00940000157440	ENSGT00530000063564.b	ENSGT00940000165690	ENSGT00940000159224	ENSGT00940000154349	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00990000210950	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447 #33	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000159094 #37	ENSGT00940000156307.b
Elapidae	DUPLICATION
Elapidae	ANCESTRAL SPECIES																	ENSGT00940000156532.i #22
Indian cobra	MODERN SPECIES		TRPM8 (ENSNNAG00000014583)	ARL4C (ENSNNAG00000016424)	SH3BP4 (ENSNNAG00000016430)	ENSNNAG00000016434	UGT1A1 (ENSNNAG00000016458)	ENSNNAG00000016536	HDAC4 (ENSNNAG00000016586)	RAMP1 (ENSNNAG00000016973)	LRRFIP1 (ENSNNAG00000016996)	UBE2F (ENSNNAG00000017117)	FN1 (ENSNNAG00000017132) #19	ATIC (ENSNNAG00000017270) #20	ENSNNAG00000003837 #21	ENSNNAG00000003847 #21	ENSNNAG00000003892 #21	BARD1 (ENSNNAG00000003981) #22	ENSNNAG00000004003	ENSNNAG00000004042	ENSNNAG00000004078	IKZF2 (ENSNNAG00000004094) #24	ENSNNAG00000004158	ERBB4 (ENSNNAG00000004204) #26	CPS1 (ENSNNAG00000004686) #27	ENSNNAG00000004905	LANCL1 (ENSNNAG00000004916) #28	MYL1 (ENSNNAG00000004947) #29	ACADL (ENSNNAG00000005029) #31	KANSL1L (ENSNNAG00000005103) #32	ENSNNAG00000005141 #33	UNC80 (ENSNNAG00000005183) #34	ENSNNAG00000005292 #35
Elapidae_a	ANCESTRAL SPECIES																	ENSGT00940000156532.i #22
Blue-lipped sea krait	MODERN SPECIES	10950																ENSLLTG00000009361 #22
Elapidae	ANCESTRAL SPECIES		ENSGT00970000197610.A	ENSGT00940000160270	ENSGT00940000160639	ENSGT00390000013151.a.a	ENSGT00940000178952.b	ENSGT00940000159677.c.b.b	ENSGT00940000165503	ENSGT00940000157440	ENSGT00940000159224	ENSGT00940000165690	ENSGT00530000063564.b	ENSGT00940000154349	ENSGT00940000155126 #19	ENSGT00390000004553 #20	ENSGT00940000157295.g #21	ENSGT00940000156532.j #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137.e #24	ENSGT00940000157137.f #24	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00990000210950	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447 #33	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000159094 #37
Elapidae_a	ANCESTRAL SPECIES	39	ENSGT00970000197610.A	ENSGT00940000160270	ENSGT00940000160639	ENSGT00390000013151.a.a	ENSGT00940000178952.b	ENSGT00940000159677.c.b.b.c	ENSGT00940000165503	ENSGT00940000157440	ENSGT00940000159224	ENSGT00940000165690	ENSGT00530000063564.b	ENSGT00940000154349	ENSGT00940000155126 #19	ENSGT00390000004553 #20	ENSGT00940000157295.g #21	ENSGT00940000156532.j #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137.e #24	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00990000210950	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447 #33	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000159094 #37	ENSGT00940000156307.b.g
Acanthophiinae	ANCESTRAL SPECIES	39	ENSGT00970000197610.A	ENSGT00940000160270	ENSGT00940000160639	ENSGT00390000013151.a.a	ENSGT00940000178952.b	ENSGT00940000159677.c.b.b.c	ENSGT00940000165503	ENSGT00940000157440	ENSGT00940000159224	ENSGT00940000165690	ENSGT00530000063564.b	ENSGT00940000154349	ENSGT00940000155126 #19	ENSGT00390000004553 #20	ENSGT00940000157295.g #21	ENSGT00940000156532.j #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137.e #24	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00990000210950	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00990000211987	ENSGT00390000001447 #33	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00940000159094 #37
Eastern brown snake	MODERN SPECIES	36	ENSPTXG00000003401	TRPM8 (ENSPTXG00000003411)	ARL4C (ENSPTXG00000006245)	SH3BP4 (ENSPTXG00000006246)	ENSPTXG00000006247	UGT1A1 (ENSPTXG00000006248)	ENSPTXG00000006459	HDAC4 (ENSPTXG00000006466)	RAMP1 (ENSPTXG00000007137)	LRRFIP1 (ENSPTXG00000007138)	UBE2F (ENSPTXG00000007143)	FN1 (ENSPTXG00000007144) #19	ENSPTXG00000007146	ATIC (ENSPTXG00000007147) #20	ABCA12 (ENSPTXG00000007148) #21	ENSPTXG00000007149 #22	VWC2L (ENSPTXG00000007150) #23	SPAG16 (ENSPTXG00000007151)	IKZF2 (ENSPTXG00000007156) #24	ERBB4 (ENSPTXG00000007162) #26	CPS1 (ENSPTXG00000007248) #27	ENSPTXG00000007250	LANCL1 (ENSPTXG00000007251) #28	MYL1 (ENSPTXG00000007252) #29	ACADL (ENSPTXG00000007253) #31	KANSL1L (ENSPTXG00000007254) #32	ENSPTXG00000007255	ENSPTXG00000007256 #33	UNC80 (ENSPTXG00000007262) #34	ENSPTXG00000007270 #35	PTH2R (ENSPTXG00000007351) #37
Mainland tiger snake	MODERN SPECIES	50						HDAC4 (ENSNSUG00000004025)	RAMP1 (ENSNSUG00000004047)	ENSNSUG00000004051	ENSNSUG00000004053	ENSNSUG00000004057	UBE2F (ENSNSUG00000004058)	ENSNSUG00000004060 #19	ENSNSUG00000004070 #19	ATIC (ENSNSUG00000004072) #20	ABCA12 (ENSNSUG00000004082) #21	ENSNSUG00000004101 #22	VWC2L (ENSNSUG00000004152) #23	ENSNSUG00000004154	ENSNSUG00000004165	IKZF2 (ENSNSUG00000004175) #24	ENSNSUG00000004221	ERBB4 (ENSNSUG00000004236) #26	CPS1 (ENSNSUG00000004536) #27	ENSNSUG00000004700	LANCL1 (ENSNSUG00000004707) #28	MYL1 (ENSNSUG00000004715) #29	ACADL (ENSNSUG00000004717) #31	KANSL1L (ENSNSUG00000004719) #32	ENSNSUG00000004721	ENSNSUG00000004723 #33	UNC80 (ENSNSUG00000004726) #34
Blue-lipped sea krait	MODERN SPECIES	1163																ENSLLTG00000011726 #22
Lizard	MODERN SPECIES		ENSACAG00000036597	KCTD18 (ENSACAG00000016086)	SPATS2L (ENSACAG00000016043)	ENSACAG00000037481	maip1 (ENSACAG00000035749)	ENSACAG00000035190	TYW5 (ENSACAG00000036776)	ENSACAG00000015939	ENSACAG00000026010	ENSACAG00000040605	ENSACAG00000015931	MREG (ENSACAG00000015921) #18	FN1 (ENSACAG00000015637) #19	ATIC (ENSACAG00000015527) #20	ABCA12 (ENSACAG00000015468) #21	BARD1 (ENSACAG00000015438) #22	VWC2L (ENSACAG00000015435) #23	ENSACAG00000042550	SPAG16 (ENSACAG00000009635)	ENSACAG00000041259	IKZF2 (ENSACAG00000025864) #24	ENSACAG00000038851	ENSACAG00000038179	ENSACAG00000043707	ERBB4 (ENSACAG00000009921) #26	CPS1 (ENSACAG00000010170) #27	LANCL1 (ENSACAG00000010566) #28	MYL1 (ENSACAG00000010643) #29	ACADL (ENSACAG00000010677) #31	KANSL1L (ENSACAG00000010727) #32	ENSACAG00000010750 #33
Laterata	ANCESTRAL SPECIES	13	ENSGT00940000159677.c.b.a.b	ENSGT00940000163820	ENSGT00940000157267	ENSGT00720000108822	ENSGT00940000153969.b	ENSGT00940000161996	ENSGT00940000157440	ENSGT00530000063564.b	ENSGT00940000165690	ENSGT00940000159224	ENSGT00940000154349	ENSGT00390000008926 #18	ENSGT00940000155126 #19	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00940000154695 #26	ENSGT00940000157192 #27	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447 #33	ENSGT00640000091496 #34	ENSGT00940000156597.b #35
Common wall lizard	MODERN SPECIES		ENSPMRG00000002607	ENSPMRG00000002610	TWIST2 (ENSPMRG00000002615)	ENSPMRG00000002621	HDAC4 (ENSPMRG00000002624)	LRRFIP1 (ENSPMRG00000002645)	ENSPMRG00000002666	RAMP1 (ENSPMRG00000002672)	UBE2F (ENSPMRG00000002680)	MREG (ENSPMRG00000002696) #18	ENSPMRG00000002705	ENSPMRG00000002711	FN1 (ENSPMRG00000003085) #19	ATIC (ENSPMRG00000004219) #20	ABCA12 (ENSPMRG00000004583) #21	BARD1 (ENSPMRG00000004748) #22	ENSPMRG00000004754	VWC2L (ENSPMRG00000004758) #23	ENSPMRG00000004761	ENSPMRG00000004762	SPAG16 (ENSPMRG00000004767)	ENSPMRG00000004772 #24	ENSPMRG00000004776 #24	ERBB4 (ENSPMRG00000004787) #26	ENSPMRG00000004805	CPS1 (ENSPMRG00000004877) #27	LANCL1 (ENSPMRG00000006481) #28	MYL1 (ENSPMRG00000006498) #29	ENSPMRG00000006524 #31	ENSPMRG00000006588 #33	UNC80 (ENSPMRG00000006650) #34
Argentine black and white tegu	MODERN SPECIES	12	USP40 (ENSSMRG00000020847)	TRAF3IP1 (ENSSMRG00000020846)	ASB1 (ENSSMRG00000020845)	TWIST2 (ENSSMRG00000020843)	HDAC4 (ENSSMRG00000020842)	ENSSMRG00000020841	LRRFIP1 (ENSSMRG00000020840)	ENSSMRG00000020838	ENSSMRG00000020837	ENSSMRG00000020836	UBE2F (ENSSMRG00000020835)	MREG (ENSSMRG00000020834) #18	FN1 (ENSSMRG00000020833) #19	ATIC (ENSSMRG00000020832) #20	ABCA12 (ENSSMRG00000020831) #21	BARD1 (ENSSMRG00000020830) #22	VWC2L (ENSSMRG00000020829) #23	ENSSMRG00000020827	ENSSMRG00000020826	IKZF2 (ENSSMRG00000020825) #24	ENSSMRG00000020823	ERBB4 (ENSSMRG00000020822) #26	CPS1 (ENSSMRG00000020820) #27	LANCL1 (ENSSMRG00000020819) #28	MYL1 (ENSSMRG00000020818) #29	ACADL (ENSSMRG00000020817) #31	KANSL1L (ENSSMRG00000020816) #32	ENSSMRG00000020815 #33	UNC80 (ENSSMRG00000020808) #34	ENSSMRG00000020807 #35	ENSSMRG00000020804
Anura	ANCESTRAL SPECIES	7	ENSGT00940000166277	ENSGT00940000171532.a	ENSGT00940000156462.C	ENSGT00950000183138.a.b	ENSGT00950000185272	ENSGT00940000161839	ENSGT00530000063564.b	ENSGT00940000177452	ENSGT00940000159224	ENSGT00940000154349	ENSGT00940000163794.y	ENSGT00940000166348	ENSGT00940000155126 #19	ENSGT00390000004553 #20	ENSGT00940000157295 #21	ENSGT00940000156532 #22	ENSGT00720000108792.B #23	ENSGT00940000155053	ENSGT00940000157137 #24	ENSGT00940000154695 #26	ENSGT00390000005983	ENSGT00940000157192 #27	ENSGT00530000063186.b.b #28	ENSGT01030000234570.d.a #29	ENSGT00940000157652 #31	ENSGT00530000063688.a #32	ENSGT00390000001447 #33	ENSGT00640000091496 #34	ENSGT00940000156597.b #35	ENSGT00390000007989	ENSGT00940000155992
Frog	MODERN SPECIES	9	gbx2.1 (ENSXETG00000003290)	agap1 (ENSXETG00000003280)	trpm8 (ENSXETG00000026873)	trpm8b (ENSXETG00000003271)	arl4c (ENSXETG00000043177)	sh3bp4 (ENSXETG00000010910)	ugt1a6 (ENSXETG00000004890)	ramp1 (ENSXETG00000010906)	ube2f (ENSXETG00000010905)	XB5811292 [provisional] (ENSXETG00000031863)	mreg (ENSXETG00000010902)	fn1 (ENSXETG00000010898) #19	atic (ENSXETG00000025087) #20	ENSXETG00000038463 #21	abca12 (ENSXETG00000014244) #21	bard1 (ENSXETG00000014241) #22	ENSXETG00000045433	spag16 (ENSXETG00000038570)	vwc2l (ENSXETG00000014240) #23	ikzf2 (ENSXETG00000003127) #24	ENSXETG00000044441	erbb4 (ENSXETG00000000413) #26	ENSXETG00000042388	cps1 (ENSXETG00000006919) #27	lancl1 (ENSXETG00000006918) #28	myl1 (ENSXETG00000006917) #29	kansl1l (ENSXETG00000001088) #32	acadl (ENSXETG00000001085) #31	dpepe (ENSXETG00000001084)	nme9 (ENSXETG00000001083)	rab5d (ENSXETG00000001082)
Coelacanth	MODERN SPECIES	627				ENSLACG00000005882	ENSLACG00000008603	ENSLACG00000009797	LSS (ENSLACG00000010380)	MCM3AP (ENSLACG00000010838)	YBEY (ENSLACG00000011567)	C21orf58 (ENSLACG00000011823)	hnmt (ENSLACG00000012024)	ENSLACG00000022203	FTCD (ENSLACG00000012351)	ENSLACG00000012612	ABCA12 (ENSLACG00000014253) #21	ENSLACG00000014837 #22	VWC2L (ENSLACG00000015603) #23