Eupecaria_A	ANCESTRAL SPECIES	2	ENSGT01060000248564.a.b #8	ENSGT00940000158787 #9	ENSGT00940000159442 #10	ENSGT01030000235133	ENSGT01090000260070.C.a #11	ENSGT00390000017974.nb #12	ENSGT00950000183031.A.a.a #13	ENSGT00940000165372 #14	ENSGT00390000005813 #15	ENSGT00950000183028.a.b.a #16	ENSGT00940000158871 #17	ENSGT00810000125524 #18	ENSGT00390000003012 #19	ENSGT00940000156553 #20	ENSGT00940000159398 #21	ENSGT00950000182941.a.a.b.e.a.b #22	ENSGT00950000183163.a.a.ab #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.b #25	ENSGT00950000182986.b #26	ENSGT00390000004808.e #27	ENSGT00940000166129 #28	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00530000068429 #31	ENSGT00940000159465 #32	ENSGT00940000155107.a.a.a #33	ENSGT00990000204035 #34	ENSGT00940000156762 #35	ENSGT00940000157291 #36	ENSGT00390000015364.b #37
Eupecaria_B	ANCESTRAL SPECIES	4	ENSGT00530000063881.a.b #7	ENSGT01060000248564.a.b #8	ENSGT00940000158787 #9	ENSGT00940000159442 #10	ENSGT01090000260070.C.a #11	ENSGT00390000017974.nb #12	ENSGT00950000183031.A.a.a #13	ENSGT00940000165372 #14	ENSGT00390000005813 #15	ENSGT00950000183028.a.b.a #16	ENSGT00940000158871 #17	ENSGT00810000125524 #18	ENSGT00390000003012 #19	ENSGT00940000156553 #20	ENSGT00940000159398 #21	ENSGT00950000182941.a.a.b.e.a.b #22	ENSGT00950000183163.a.a.ab #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.b #25	ENSGT00950000182986.b #26	ENSGT00390000004808.e #27	ENSGT00940000166129 #28	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00530000068429 #31	ENSGT00940000159465 #32	ENSGT00940000155107.a.a.a #33	ENSGT00990000204035 #34	ENSGT00940000156762 #35	ENSGT00940000157291 #36	ENSGT00390000015364.b #37
Perciformes	ANCESTRAL SPECIES	3	ENSGT00530000063881.a.b #7	ENSGT01060000248564.a.b #8	ENSGT00940000158787 #9	ENSGT00940000159442 #10	ENSGT01090000260070.C.a #11	ENSGT00390000017974.nb #12	ENSGT00950000183031.A.a.a #13	ENSGT00940000165372 #14	ENSGT00390000005813 #15	ENSGT00950000183028.a.b.a #16	ENSGT00940000158871 #17	ENSGT00810000125524 #18	ENSGT00390000003012 #19	ENSGT00940000156553 #20	ENSGT00940000159398 #21	ENSGT00950000182941.a.a.b.e.a.b #22	ENSGT00950000183163.a.a.ab #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.b #25	ENSGT00950000182986.b #26	ENSGT00390000004808.e #27	ENSGT00940000166129 #28	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00530000068429 #31	ENSGT00940000159465 #32	ENSGT00940000155107.a.a.a #33	ENSGT00990000204035 #34	ENSGT00940000156762 #35	ENSGT00940000157291 #36	ENSGT00390000015364.b #37
Perciformes_a	ANCESTRAL SPECIES	3	ENSGT00940000154450.uc	ENSGT00530000063881.a.b #7	ENSGT01060000248564.a.b #8	ENSGT00940000158787 #9	ENSGT00940000159442 #10	ENSGT01090000260070.C.a #11	ENSGT00390000017974.nb #12	ENSGT00940000165372 #14	ENSGT00390000005813 #15	ENSGT00950000183028.a.b.a #16	ENSGT00940000158871 #17	ENSGT00810000125524 #18	ENSGT00390000003012 #19	ENSGT00940000156553 #20	ENSGT00940000159398 #21	ENSGT00950000182941.a.a.b.e.a.b #22	ENSGT00950000183163.a.a.ab #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.b #25	ENSGT00950000182986.b #26	ENSGT00390000004808.e #27	ENSGT00940000166129 #28	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #32	ENSGT00940000155107.a.a.a #33	ENSGT00940000156762 #35	ENSGT00940000157291 #36	ENSGT00390000015364.b #37	ENSGT00390000016054.b.i	ENSGT00940000153295.a.a
Pike perch	MODERN SPECIES	116													dnali1 (ENSSLUG00000005235) #19	snip1 (ENSSLUG00000005225)	MAP3K6 (ENSSLUG00000003332) #21	MAP7D1 (ENSSLUG00000002922) #22	THRAP3 (ENSSLUG00000002906) #23	sh3d21 (ENSSLUG00000002896) #24	eva1ba (ENSSLUG00000002889) #25	STK40 (ENSSLUG00000002877) #26	OSCP1 (ENSSLUG00000002865) #27	ENSSLUG00000002857 #28	mrps15 (ENSSLUG00000023350) #29	csf3r (ENSSLUG00000023341) #30	GRIK3 (ENSSLUG00000023219) #32	ENSSLUG00000023196	ZC3H12A (ENSSLUG00000023191) #33	ENSSLUG00000023188	INPP5B (ENSSLUG00000021701) #35	mtf1 (ENSSLUG00000021588) #36	yrdc (ENSSLUG00000021583) #37
Cottioidei	ANCESTRAL SPECIES	7	ENSGT00940000154450.uc	ENSGT00530000063881.a.b #7	ENSGT01060000248564.a.b #8	ENSGT00940000158787 #9	ENSGT00940000159442 #10	ENSGT01090000260070.C.a #11	ENSGT00390000017974.nb #12	ENSGT00950000183031.A.a.a #13	ENSGT00940000165372 #14	ENSGT00390000005813 #15	ENSGT00950000183028.a.b.a #16	ENSGT00940000158871 #17	ENSGT00810000125524 #18	ENSGT00390000003012 #19	ENSGT00940000159398 #21	ENSGT00950000182941.a.a.b.e.a.b #22	ENSGT00950000183163.a.a.ab #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.b #25	ENSGT00950000182986.b #26	ENSGT00390000004808.e #27	ENSGT00940000166129 #28	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00530000068429 #31	ENSGT00940000159465 #32	ENSGT00940000155107.a.a.a #33	ENSGT00990000204035 #34	ENSGT00940000156762 #35	ENSGT00940000157291 #36	ENSGT00390000015364.b #37
Stickleback	DUPLICATION
Stickleback	MODERN SPECIES	19	pnrc2 (ENSGACG00000013653) #7	cnr2 (ENSGACG00000013656) #8	akirin1 (ENSGACG00000013657) #9	rhbdl2 (ENSGACG00000013668) #10	GJA9 (ENSGACG00000013675) #11	ENSGACG00000013676 #12	rragca (ENSGACG00000013678) #13	pou3f1 (ENSGACG00000013679) #14	utp11 (ENSGACG00000013680) #15	FHL3 (ENSGACG00000013685) #16	rspo1 (ENSGACG00000013691) #17	gnl2 (ENSGACG00000013692) #18	dnali1 (ENSGACG00000013717) #19	snip1 (ENSGACG00000013718)	MAP3K6 (ENSGACG00000013722) #21	ENSGACG00000013737 #22	ENSGACG00000013740 #22	THRAP3 (ENSGACG00000013745) #23	sh3d21 (ENSGACG00000013749) #24	eva1ba (ENSGACG00000013751) #25	STK40 (ENSGACG00000013752) #26	OSCP1 (ENSGACG00000013774) #27	mrps15 (ENSGACG00000013792) #29	csf3r (ENSGACG00000013795) #30	ENSGACG00000013798 #31	GRIK3 (ENSGACG00000013802) #32	ZC3H12A (ENSGACG00000013859) #33	ENSGACG00000013863 #34	INPP5B (ENSGACG00000013866) #35	mtf1 (ENSGACG00000013875) #36	yrdc (ENSGACG00000013878) #37
Stickleback	MODERN SPECIES	19	cnr2 (ENSGACG00000013656) #8	akirin1 (ENSGACG00000013657) #9	rhbdl2 (ENSGACG00000013668) #10	GJA9 (ENSGACG00000013675) #11	ENSGACG00000013676 #12	rragca (ENSGACG00000013678) #13	pou3f1 (ENSGACG00000013679) #14	utp11 (ENSGACG00000013680) #15	FHL3 (ENSGACG00000013685) #16	rspo1 (ENSGACG00000013691) #17	gnl2 (ENSGACG00000013692) #18	dnali1 (ENSGACG00000013717) #19	snip1 (ENSGACG00000013718)	MAP3K6 (ENSGACG00000013722) #21	ENSGACG00000013737 #22	ENSGACG00000013740 #22	THRAP3 (ENSGACG00000013745) #23	sh3d21 (ENSGACG00000013749) #24	eva1ba (ENSGACG00000013751) #25	STK40 (ENSGACG00000013752) #26	OSCP1 (ENSGACG00000013774) #27	mrps15 (ENSGACG00000013792) #29	csf3r (ENSGACG00000013795) #30	ENSGACG00000013798 #31	GRIK3 (ENSGACG00000013802) #32	ZC3H12A (ENSGACG00000013859) #33	ENSGACG00000013863 #34	INPP5B (ENSGACG00000013866) #35	mtf1 (ENSGACG00000013875) #36	yrdc (ENSGACG00000013878) #37	ENSGACG00000013885
Lumpfish	MODERN SPECIES	7	pnrc2 (ENSCLMG00005009430) #7	cnr2 (ENSCLMG00005009429) #8	akirin1 (ENSCLMG00005009427) #9	rhbdl2 (ENSCLMG00005009374) #10	GJA9 (ENSCLMG00005009373) #11	ENSCLMG00005009372 #12	rragca (ENSCLMG00005009371) #13	pou3f1 (ENSCLMG00005009370) #14	utp11 (ENSCLMG00005009369) #15	FHL3 (ENSCLMG00005009368) #16	rspo1 (ENSCLMG00005009363) #17	gnl2 (ENSCLMG00005009359) #18	dnali1 (ENSCLMG00005009357) #19	snip1 (ENSCLMG00005009356)	MAP3K6 (ENSCLMG00005009166) #21	MAP7D1 (ENSCLMG00005009165) #22	THRAP3 (ENSCLMG00005009163) #23	sh3d21 (ENSCLMG00005009162) #24	eva1ba (ENSCLMG00005009161) #25	STK40 (ENSCLMG00005009160) #26	OSCP1 (ENSCLMG00005009149) #27	ENSCLMG00005009147 #28	mrps15 (ENSCLMG00005009146) #29	csf3r (ENSCLMG00005009144) #30	GRIK3 (ENSCLMG00005008787) #32	ZC3H12A (ENSCLMG00005008781) #33	INPP5B (ENSCLMG00005007032) #35	mtf1 (ENSCLMG00005007022) #36	yrdc (ENSCLMG00005007021) #37	MANEAL (ENSCLMG00005007019)	LIN28A (ENSCLMG00005007018)
Eupecaria_C	ANCESTRAL SPECIES	2	ENSGT00940000154450.uc	ENSGT00530000063881.a.b #7	ENSGT01060000248564.a.b #8	ENSGT00940000158787 #9	ENSGT00940000159442 #10	ENSGT01090000260070.C.a #11	ENSGT00390000017974.nb #12	ENSGT00950000183031.A.a.a #13	ENSGT00940000165372 #14	ENSGT00390000005813 #15	ENSGT00950000183028.a.b.a #16	ENSGT00940000158871 #17	ENSGT00810000125524 #18	ENSGT00390000003012 #19	ENSGT00940000159398 #21	ENSGT00950000182941.a.a.b.e.a.b #22	ENSGT00950000183163.a.a.ab #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.b #25	ENSGT00950000182986.b #26	ENSGT00390000004808.e #27	ENSGT00940000166129 #28	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #32	ENSGT00940000155107.a.a.a #33	ENSGT00990000204035 #34	ENSGT00940000156762 #35	ENSGT00940000157291 #36	ENSGT00390000015364.b #37	ENSGT00390000016054.b.i
Gilthead seabream	MODERN SPECIES	8	pnrc2 (ENSSAUG00010015052) #7	cnr2 (ENSSAUG00010015051) #8	akirin1 (ENSSAUG00010015045) #9	rhbdl2 (ENSSAUG00010015042) #10	GJA9 (ENSSAUG00010015040) #11	ENSSAUG00010015039 #12	rragca (ENSSAUG00010015034) #13	pou3f1 (ENSSAUG00010015032) #14	utp11 (ENSSAUG00010015030) #15	FHL3 (ENSSAUG00010015024) #16	rspo1 (ENSSAUG00010015022) #17	gnl2 (ENSSAUG00010015013) #18	dnali1 (ENSSAUG00010015007) #19	snip1 (ENSSAUG00010015005)	MAP3K6 (ENSSAUG00010020734) #21	MAP7D1 (ENSSAUG00010020726) #22	THRAP3 (ENSSAUG00010020723) #23	sh3d21 (ENSSAUG00010020721) #24	eva1ba (ENSSAUG00010020720) #25	STK40 (ENSSAUG00010020718) #26	OSCP1 (ENSSAUG00010020717) #27	ENSSAUG00010020716 #28	mrps15 (ENSSAUG00010020715) #29	csf3r (ENSSAUG00010020713) #30	GRIK3 (ENSSAUG00010017988) #32	ZC3H12A (ENSSAUG00010017948) #33	ENSSAUG00010017943 #34	INPP5B (ENSSAUG00010017637) #35	mtf1 (ENSSAUG00010017599) #36	yrdc (ENSSAUG00010017597) #37	MANEAL (ENSSAUG00010017595)
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	2	ENSGT00940000164147.a	ENSGT00940000154450.uc	ENSGT00530000063881.a.b #7	ENSGT01060000248564.a.b #8	ENSGT00940000158787 #9	ENSGT00940000159442 #10	ENSGT01090000260070.C.a #11	ENSGT00390000017974.nb #12	ENSGT00940000165372 #14	ENSGT00390000005813 #15	ENSGT00950000183028.a.b.a #16	ENSGT00940000158871 #17	ENSGT00810000125524 #18	ENSGT00390000003012 #19	ENSGT00940000159398 #21	ENSGT00950000182941.a.a.b.e.a.b #22	ENSGT00950000183163.a.a.ab #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.b #25	ENSGT00950000182986.b #26	ENSGT00390000004808.e #27	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #32	ENSGT00940000155107.a.a.a #33	ENSGT00990000204035 #34	ENSGT00940000156762 #35	ENSGT00940000157291 #36	ENSGT00390000015364.b #37	ENSGT00390000016054.b.i	ENSGT00940000153295.a.a
European seabass	MODERN SPECIES	6	pnrc2 (ENSDLAG00005027869) #7	ENSDLAG00005007393	SRSF10 (ENSDLAG00005029184)	cnr2 (ENSDLAG00005033223) #8	rhbdl2 (ENSDLAG00005007466) #10	GJA9 (ENSDLAG00005007475) #11	ENSDLAG00005029266 #12	rragca (ENSDLAG00005007481) #13	pou3f1 (ENSDLAG00005029296) #14	utp11 (ENSDLAG00005007490) #15	FHL3 (ENSDLAG00005007500) #16	rspo1 (ENSDLAG00005007510) #17	gnl2 (ENSDLAG00005007540) #18	dnali1 (ENSDLAG00005034656) #19	ENSDLAG00005008475 #21	MAP7D1 (ENSDLAG00005009499) #22	THRAP3 (ENSDLAG00005009555) #23	sh3d21 (ENSDLAG00005009583) #24	eva1ba (ENSDLAG00005029823) #25	STK40 (ENSDLAG00005009633) #26	OSCP1 (ENSDLAG00005009654) #27	mrps15 (ENSDLAG00005030986) #29	csf3r (ENSDLAG00005009735) #30	GRIK3 (ENSDLAG00005009845) #32	ZC3H12A (ENSDLAG00005011869) #33	ENSDLAG00005032500 #34	INPP5B (ENSDLAG00005011892) #35	mtf1 (ENSDLAG00005012917) #36	MANEAL (ENSDLAG00005027752)	yrdc (ENSDLAG00005013053) #37	ENSDLAG00005034052
Large yellow croaker	MODERN SPECIES	484	scn1ba (ENSLCRG00005010222)	ENSLCRG00005010153	si:ch211-225p5.8 (ENSLCRG00005010109)	KCNE1 (ENSLCRG00005010097)	dnajc28 (ENSLCRG00005010096)	ENSLCRG00005010093	rragca (ENSLCRG00005010089) #13	pou3f1 (ENSLCRG00005010081) #14	utp11 (ENSLCRG00005010070) #15	FHL3 (ENSLCRG00005010057) #16	rspo1 (ENSLCRG00005010051) #17	gnl2 (ENSLCRG00005010011) #18	dnali1 (ENSLCRG00005009982) #19	snip1 (ENSLCRG00005009965)	ENSLCRG00005006336 #21	MAP7D1 (ENSLCRG00005005931) #22	THRAP3 (ENSLCRG00005005916) #23	sh3d21 (ENSLCRG00005005906) #24	eva1ba (ENSLCRG00005005900) #25	STK40 (ENSLCRG00005005869) #26	OSCP1 (ENSLCRG00005005741) #27	ENSLCRG00005005712	mrps15 (ENSLCRG00005005702) #29	csf3r (ENSLCRG00005005672) #30	GRIK3 (ENSLCRG00005005377) #32	ZC3H12A (ENSLCRG00005005327) #33	ENSLCRG00005005318 #34	INPP5B (ENSLCRG00005003620) #35	mtf1 (ENSLCRG00005003083) #36	yrdc (ENSLCRG00005002976) #37	MANEAL (ENSLCRG00005012059)
Ballan wrasse	MODERN SPECIES	58	akirin1 (ENSLBEG00000008199) #9	rhbdl2 (ENSLBEG00000008248) #10	ENSLBEG00000008283	GJA9 (ENSLBEG00000008301) #11	ENSLBEG00000008336	rragca (ENSLBEG00000008360) #13	pou3f1 (ENSLBEG00000008388) #14	utp11 (ENSLBEG00000008407) #15	FHL3 (ENSLBEG00000008447) #16	rspo1 (ENSLBEG00000008477) #17	gnl2 (ENSLBEG00000008518) #18	dnali1 (ENSLBEG00000008589) #19	ENSLBEG00000008632	ENSLBEG00000008644 #21	ENSLBEG00000008678 #21	MAP7D1 (ENSLBEG00000008723) #22	THRAP3 (ENSLBEG00000008813) #23	sh3d21 (ENSLBEG00000008879) #24	eva1ba (ENSLBEG00000008911) #25	ENSLBEG00000008935	STK40 (ENSLBEG00000008958) #26	OSCP1 (ENSLBEG00000009007) #27	ENSLBEG00000009056 #28	mrps15 (ENSLBEG00000009087) #29	CSF3R (ENSLBEG00000009161) #30	GRIK3 (ENSLBEG00000009256) #32