Gnathostomata	DUPLICATION
Gnathostomata	ANCESTRAL SPECIES	379																ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b #25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT01030000235168	ENSGT00390000001737 #29
Euteleostomi	ANCESTRAL SPECIES	146																ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.b #25	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00940000161202	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00990000203803	ENSGT00390000015257	ENSGT00940000156553 #20
Actinopterygii	ANCESTRAL SPECIES	153													ENSGT00940000163282	ENSGT00940000157531	ENSGT00940000159398 #21	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.b #25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00940000161202	ENSGT01050000244848.B.b	ENSGT01050000244848.B.a.b	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00990000203803	ENSGT00810000125524 #18
Neopterygii	ANCESTRAL SPECIES	56															ENSGT00940000159398 #21	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.b #25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00940000171263	ENSGT00510000047886.b	ENSGT00950000183199.a.b	ENSGT00940000163576	ENSGT00940000161202	ENSGT01050000244848.B.b	ENSGT01050000244848.B.a.b	ENSGT00940000160262	ENSGT00940000162179.e.a.b
Osteoglossocephalai	DUPLICATION
Osteoglossocephalai	DUPLICATION
Osteoglossocephalai	ANCESTRAL SPECIES	4												ENSGT00940000166920	ENSGT00390000003012 #19	ENSGT00940000156553 #20	ENSGT00940000159398 #21	ENSGT00950000182941.a.a.b.e.a #22	ENSGT00950000183163.a.a.ab #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.b #25	ENSGT00950000182986.b #26	ENSGT00390000004808.e #27	ENSGT01030000235168	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00990000203803	ENSGT00810000125524 #18	ENSGT00940000158871 #17	ENSGT00950000183028.a.b.a #16	ENSGT00390000005813 #15
Clupeocephala	DUPLICATION
Clupeocephala	ANCESTRAL SPECIES		ENSGT01060000248564.a.b #9	ENSGT00940000158787 #10	ENSGT00940000159442 #11	ENSGT01030000235133	ENSGT01090000260070.C.a #12	ENSGT00390000017974.nb #13	ENSGT00950000183031.A.a.a	ENSGT00940000165372 #14	ENSGT00390000005813 #15	ENSGT00950000183028.a.b.a #16	ENSGT00940000158871 #17	ENSGT00810000125524 #18	ENSGT00390000003012 #19	ENSGT00940000156553 #20	ENSGT00940000159398 #21	ENSGT00950000182941.a.a.b.e.a.b #22	ENSGT00950000183163.a.a.ab #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.b #25	ENSGT00950000182986.b #26	ENSGT00390000004808.e #27	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a.a #32	ENSGT00990000203803	ENSGT00940000156762 #34	ENSGT00940000157291 #35	ENSGT00390000015364.b #36	ENSGT00390000016054.b.i #37	ENSGT00940000153295.a.a
Euteleosteomorpha	ANCESTRAL SPECIES	13	ENSGT01060000248564.a.b #9	ENSGT00940000158787 #10	ENSGT00940000159442 #11	ENSGT01030000235133	ENSGT01090000260070.C.a #12	ENSGT00390000017974.nb #13	ENSGT00950000183031.A.a.a	ENSGT00940000165372 #14	ENSGT00390000005813 #15	ENSGT00950000183028.a.b.a #16	ENSGT00940000158871 #17	ENSGT00810000125524 #18	ENSGT00390000003012 #19	ENSGT00940000156553 #20	ENSGT00940000159398 #21	ENSGT00950000182941.a.a.b.e.a.b #22	ENSGT00950000183163.a.a.ab #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.b #25	ENSGT00950000182986.b #26	ENSGT00390000004808.e #27	ENSGT01030000235168	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a.a #32	ENSGT00990000203803	ENSGT00940000156762 #34	ENSGT00940000157291 #35	ENSGT00390000015364.b #36	ENSGT00390000016054.b.i #37
Acanthomorphata	ANCESTRAL SPECIES	38	ENSGT00530000063881.a.b #8	ENSGT01060000248564.a.b #9	ENSGT00940000158787 #10	ENSGT00940000159442 #11	ENSGT01090000260070.C.a #12	ENSGT00390000017974.nb #13	ENSGT00950000183031.A.a.a	ENSGT00940000165372 #14	ENSGT00390000005813 #15	ENSGT00950000183028.a.b.a #16	ENSGT00940000158871 #17	ENSGT00810000125524 #18	ENSGT00390000003012 #19	ENSGT00940000156553 #20	ENSGT00940000159398 #21	ENSGT00950000182941.a.a.b.e.a.b #22	ENSGT00950000183163.a.a.ab #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.b #25	ENSGT00950000182986.b #26	ENSGT00390000004808.e #27	ENSGT01100000263479.H.c.b	ENSGT01100000263479.H.c.a.a	ENSGT01100000263479.G	ENSGT00950000183199.a.b	ENSGT00940000177028	ENSGT00940000163576	ENSGT00940000161202	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31
Euacanthomorphacea	ANCESTRAL SPECIES		ENSGT00530000063881.a.b #8	ENSGT01060000248564.a.b #9	ENSGT00940000158787 #10	ENSGT00940000159442 #11	ENSGT01090000260070.C.a #12	ENSGT00390000017974.nb #13	ENSGT00950000183031.A.a.a	ENSGT00940000165372 #14	ENSGT00390000005813 #15	ENSGT00950000183028.a.b.a #16	ENSGT00940000158871 #17	ENSGT00810000125524 #18	ENSGT00390000003012 #19	ENSGT00940000156553 #20	ENSGT00940000159398 #21	ENSGT00950000182941.a.a.b.e.a.b #22	ENSGT00950000183163.a.a.ab #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.b #25	ENSGT00950000182986.b #26	ENSGT00390000004808.e #27	ENSGT00940000166129 #28	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a.a #32	ENSGT00990000203803	ENSGT00940000156762 #34	ENSGT00940000157291 #35	ENSGT00390000015364.b #36	ENSGT00390000016054.b.i #37
Percomorphaceae	ANCESTRAL SPECIES		ENSGT00530000063881.a.b #8	ENSGT01060000248564.a.b #9	ENSGT00940000158787 #10	ENSGT00940000159442 #11	ENSGT01090000260070.C.a #12	ENSGT00390000017974.nb #13	ENSGT00950000183031.A.a.a	ENSGT00940000165372 #14	ENSGT00390000005813 #15	ENSGT00950000183028.a.b.a #16	ENSGT00940000158871 #17	ENSGT00810000125524 #18	ENSGT00390000003012 #19	ENSGT00940000156553 #20	ENSGT00940000159398 #21	ENSGT00950000182941.a.a.b.e.a.b #22	ENSGT00950000183163.a.a.ab #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.b #25	ENSGT00950000182986.b #26	ENSGT00390000004808.e #27	ENSGT00940000166129 #28	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a.a #32	ENSGT00990000203803	ENSGT00940000156762 #34	ENSGT00940000157291 #35	ENSGT00390000015364.b #36	ENSGT00390000016054.b.i #37
Percomorphaceae_B	ANCESTRAL SPECIES	1	ENSGT00530000063881.a.b #8	ENSGT01060000248564.a.b #9	ENSGT00940000158787 #10	ENSGT00940000159442 #11	ENSGT01090000260070.C.a #12	ENSGT00390000017974.nb #13	ENSGT00950000183031.A.a.a	ENSGT00940000165372 #14	ENSGT00390000005813 #15	ENSGT00950000183028.a.b.a #16	ENSGT00940000158871 #17	ENSGT00810000125524 #18	ENSGT00390000003012 #19	ENSGT00940000156553 #20	ENSGT00940000159398 #21	ENSGT00950000182941.a.a.b.e.a.b #22	ENSGT00950000183163.a.a.ab #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.b #25	ENSGT00950000182986.b #26	ENSGT00390000004808.e #27	ENSGT00940000166129 #28	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00530000068429	ENSGT00940000159465 #31	ENSGT00940000155107.a.a.a #32	ENSGT00990000204035 #33	ENSGT00940000156762 #34	ENSGT00940000157291 #35	ENSGT00390000015364.b #36
Ovalentaria	ANCESTRAL SPECIES	3	ENSGT00530000063881.a.b #8	ENSGT01060000248564.a.b #9	ENSGT00940000158787 #10	ENSGT00940000159442 #11	ENSGT01090000260070.C.a #12	ENSGT00390000017974.nb #13	ENSGT00950000183031.A.a.a	ENSGT00940000165372 #14	ENSGT00390000005813 #15	ENSGT00950000183028.a.b.a #16	ENSGT00940000158871 #17	ENSGT00810000125524 #18	ENSGT00390000003012 #19	ENSGT00940000156553 #20	ENSGT00940000159398 #21	ENSGT00950000182941.a.a.b.e.a.b #22	ENSGT00950000183163.a.a.ab #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.b #25	ENSGT00950000182986.b #26	ENSGT00390000004808.e #27	ENSGT00940000166129 #28	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00530000068429	ENSGT00940000159465 #31	ENSGT00940000155107.a.a.a #32	ENSGT00990000204035 #33	ENSGT00600000085609	ENSGT00990000203803	ENSGT00940000156762 #34
Atherinomorphae	ANCESTRAL SPECIES		ENSGT00530000063881.a.b #8	ENSGT01060000248564.a.b #9	ENSGT00940000158787 #10	ENSGT00940000159442 #11	ENSGT01090000260070.C.a #12	ENSGT00390000017974.nb #13	ENSGT00950000183031.A.a.a	ENSGT00940000165372 #14	ENSGT00390000005813 #15	ENSGT00950000183028.a.b.a #16	ENSGT00940000158871 #17	ENSGT00810000125524 #18	ENSGT00390000003012 #19	ENSGT00940000156553 #20	ENSGT00940000159398 #21	ENSGT00950000182941.a.a.b.e.a.b #22	ENSGT00950000183163.a.a.ab #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.b #25	ENSGT00950000182986.b #26	ENSGT00390000004808.e #27	ENSGT00940000166129 #28	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00530000068429	ENSGT00940000159465 #31	ENSGT00940000155107.a.a.a #32	ENSGT00990000204035 #33	ENSGT00600000085609	ENSGT00940000156762 #34	ENSGT00940000157291 #35
Oryzias	ANCESTRAL SPECIES	2	ENSGT00530000063881.a.b #8	ENSGT01060000248564.a.b #9	ENSGT00940000158787 #10	ENSGT00940000159442 #11	ENSGT01090000260070.C.a #12	ENSGT00390000017974.nb #13	ENSGT00950000183031.A.a.a	ENSGT00940000165372 #14	ENSGT00390000005813 #15	ENSGT00950000183028.a.b.a #16	ENSGT00940000158871 #17	ENSGT00810000125524 #18	ENSGT00390000003012 #19	ENSGT00940000156553 #20	ENSGT00940000159398 #21	ENSGT00950000182941.a.a.b.e.a.b #22	ENSGT00950000183163.a.a.ab #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.b #25	ENSGT00950000182986.b #26	ENSGT00390000004808.e #27	ENSGT00940000166129 #28	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a.a #32	ENSGT00990000204035 #33	ENSGT00940000156762 #34	ENSGT00940000157291 #35	ENSGT00390000015364.b #36	ENSGT00390000016054.b.i #37
Oryzias_b	ANCESTRAL SPECIES	1	ENSGT00940000164147.a #7	ENSGT00530000063881.a.b #8	ENSGT01060000248564.a.b #9	ENSGT00940000158787 #10	ENSGT00940000159442 #11	ENSGT01090000260070.C.a #12	ENSGT00390000017974.nb #13	ENSGT00940000165372 #14	ENSGT00390000005813 #15	ENSGT00950000183028.a.b.a #16	ENSGT00940000158871 #17	ENSGT00810000125524 #18	ENSGT00390000003012 #19	ENSGT00940000156553 #20	ENSGT00940000159398 #21	ENSGT00950000182941.a.a.b.e.a.b #22	ENSGT00950000183163.a.a.ab #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.b #25	ENSGT00950000182986.b #26	ENSGT00390000004808.e #27	ENSGT00940000166129 #28	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a.a #32	ENSGT00990000204035 #33	ENSGT00940000156762 #34	ENSGT00940000157291 #35	ENSGT00390000015364.b #36	ENSGT00390000016054.b.i #37
Javanese ricefish	MODERN SPECIES	7	pnrc2 (ENSOJAG00000008605) #8	cnr2 (ENSOJAG00000008565) #9	akirin1 (ENSOJAG00000008552) #10	rhbdl2 (ENSOJAG00000008540) #11	GJA9 (ENSOJAG00000008511) #12	MYCBP (ENSOJAG00000008501) #13	rragca (ENSOJAG00000008450)	pou3f1 (ENSOJAG00000008412) #14	utp11 (ENSOJAG00000008374) #15	FHL3 (ENSOJAG00000008350) #16	rspo1 (ENSOJAG00000008324) #17	gnl2 (ENSOJAG00000008221) #18	dnali1 (ENSOJAG00000008190) #19	SNIP1 (ENSOJAG00000008177) #20	ENSOJAG00000006023 #21	MAP7D1 (ENSOJAG00000005723) #22	ENSOJAG00000005706	THRAP3 (ENSOJAG00000005670) #23	sh3d21 (ENSOJAG00000005635) #24	eva1ba (ENSOJAG00000005620) #25	STK40 (ENSOJAG00000005584) #26	ENSOJAG00000005568 #28	OSCP1 (ENSOJAG00000005328) #27	CSF3R (ENSOJAG00000005292) #30	GRIK3 (ENSOJAG00000004802) #31	ENSOJAG00000004702	ZC3H12A (ENSOJAG00000004692) #32	ENSOJAG00000004681 #33	INPP5B (ENSOJAG00000003535) #34	mtf1 (ENSOJAG00000003279) #35	yrdc (ENSOJAG00000003259) #36
Indian medaka	MODERN SPECIES	5	pnrc2 (ENSOMEG00000019937) #8	cnr2 (ENSOMEG00000019931) #9	akirin1 (ENSOMEG00000019917) #10	rhbdl2 (ENSOMEG00000019884) #11	GJA9 (ENSOMEG00000019858) #12	ENSOMEG00000019842	MYCBP (ENSOMEG00000019821) #13	rragca (ENSOMEG00000000525)	FHL3 (ENSOMEG00000019712) #16	utp11 (ENSOMEG00000019654) #15	rspo1 (ENSOMEG00000019637) #17	gnl2 (ENSOMEG00000019611) #18	dnali1 (ENSOMEG00000019563) #19	snip1 (ENSOMEG00000019541)	MAP3K6 (ENSOMEG00000019496) #21	MAP7D1 (ENSOMEG00000019294) #22	THRAP3 (ENSOMEG00000019164) #23	sh3d21 (ENSOMEG00000019023) #24	eva1ba (ENSOMEG00000018998) #25	STK40 (ENSOMEG00000018961) #26	OSCP1 (ENSOMEG00000018874) #27	ENSOMEG00000018849	mrps15 (ENSOMEG00000000701) #29	csf3r (ENSOMEG00000000488) #30	GRIK3 (ENSOMEG00000018771) #31	ZC3H12A (ENSOMEG00000000483) #32	ENSOMEG00000018697 #33	INPP5B (ENSOMEG00000018665) #34	mtf1 (ENSOMEG00000018579) #35	yrdc (ENSOMEG00000018550) #36	MANEAL (ENSOMEG00000000478) #37
Oryzias_a	ANCESTRAL SPECIES	9	ENSGT00530000063881.a.b #8	ENSGT01060000248564.a.b #9	ENSGT00940000158787 #10	ENSGT00940000159442 #11	ENSGT01090000260070.C.a #12	ENSGT00390000017974.nb #13	ENSGT00950000183031.A.a.a	ENSGT00940000165372 #14	ENSGT00390000005813 #15	ENSGT00950000183028.a.b.a #16	ENSGT00940000158871 #17	ENSGT00810000125524 #18	ENSGT00390000003012 #19	ENSGT00940000156553 #20	ENSGT00940000159398 #21	ENSGT00950000182941.a.a.b.e.a.b #22	ENSGT00950000183163.a.a.ab #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.b #25	ENSGT00950000182986.b #26	ENSGT00390000004808.e #27	ENSGT00940000166129 #28	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a.a #32	ENSGT00990000204035 #33	ENSGT00940000156762 #34	ENSGT00940000157291 #35	ENSGT00390000015364.b #36	ENSGT00390000016054.b.i #37
Japanese Medaka HdrR	MODERN SPECIES	7	cnr2 (ENSORLG00000014779) #9	akirin1 (ENSORLG00000014770) #10	rhbdl2 (ENSORLG00000014754) #11	GJA9 (ENSORLG00000022080) #12	MYCBP (ENSORLG00000024478) #13	rragca (ENSORLG00000014739)	pou3f1 (ENSORLG00000014708) #14	utp11 (ENSORLG00000014702) #15	ENSORLG00000021906	FHL3 (ENSORLG00000014671) #16	rspo1 (ENSORLG00000014653) #17	gnl2 (ENSORLG00000014645) #18	ENSORLG00000014620 #19	SNIP1 (ENSORLG00000014602) #20	ENSORLG00000014582 #21	MAP7D1 (ENSORLG00000014562) #22	THRAP3 (ENSORLG00000014550) #23	sh3d21 (ENSORLG00000014532) #24	eva1ba (ENSORLG00000014522) #25	STK40 (ENSORLG00000014517) #26	OSCP1 (ENSORLG00000014500) #27	ENSORLG00000028871 #28	mrps15 (ENSORLG00000014487) #29	CSF3R (ENSORLG00000014472) #30	ENSORLG00000026090	GRIK3 (ENSORLG00000014461) #31	ZC3H12A (ENSORLG00000014448) #32	INPP5B (ENSORLG00000014438) #34	mtf1 (ENSORLG00000014411) #35	yrdc (ENSORLG00000014393) #36	MANEAL (ENSORLG00000014388) #37
Chinese medaka	MODERN SPECIES	1121									utp11 (ENSOSIG00000008439) #15	FHL3 (ENSOSIG00000008444) #16	rspo1 (ENSOSIG00000008445) #17	gnl2 (ENSOSIG00000008451) #18	dnali1 (ENSOSIG00000008453) #19	SNIP1 (ENSOSIG00000008454) #20	ENSOSIG00000008457 #21	MAP7D1 (ENSOSIG00000008559) #22	THRAP3 (ENSOSIG00000008565) #23	sh3d21 (ENSOSIG00000008569) #24	eva1ba (ENSOSIG00000008574) #25	STK40 (ENSOSIG00000008577) #26	OSCP1 (ENSOSIG00000008586) #27	ENSOSIG00000008733 #28	mrps15 (ENSOSIG00000008734) #29	csf3r (ENSOSIG00000008736) #30	GRIK3 (ENSOSIG00000008739) #31	ENSOSIG00000011075	ZC3H12A (ENSOSIG00000011076) #32	ENSOSIG00000011078 #33	INPP5B (ENSOSIG00000011093) #34	mtf1 (ENSOSIG00000012847) #35	yrdc (ENSOSIG00000012916) #36
Cyprinodontiformes	ANCESTRAL SPECIES		ENSGT00530000063881.a.b #8	ENSGT01060000248564.a.b #9	ENSGT00940000158787 #10	ENSGT00940000159442 #11	ENSGT01090000260070.C.a #12	ENSGT00390000017974.nb #13	ENSGT00950000183031.A.a.a	ENSGT00940000165372 #14	ENSGT00390000005813 #15	ENSGT00950000183028.a.b.a #16	ENSGT00940000158871 #17	ENSGT00810000125524 #18	ENSGT00390000003012 #19	ENSGT00940000156553 #20	ENSGT00940000159398 #21	ENSGT00950000182941.a.a.b.e.a.b #22	ENSGT00950000183163.a.a.ab #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.b #25	ENSGT00950000182986.b #26	ENSGT00390000004808.e #27	ENSGT00940000166129 #28	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00530000068429	ENSGT00940000159465 #31	ENSGT00940000155107.a.a.a #32	ENSGT00990000204035 #33	ENSGT00600000085609	ENSGT00940000156762 #34	ENSGT00940000157291 #35
Aplocheiloidei	ANCESTRAL SPECIES	2	ENSGT00940000164147.a #7	ENSGT00530000063881.a.b #8	ENSGT01060000248564.a.b #9	ENSGT00940000158787 #10	ENSGT00940000159442 #11	ENSGT00390000017974.nb #13	ENSGT00950000183031.A.a.a	ENSGT00940000165372 #14	ENSGT00390000005813 #15	ENSGT00950000183028.a.b.a #16	ENSGT00940000158871 #17	ENSGT00810000125524 #18	ENSGT00390000003012 #19	ENSGT00940000156553 #20	ENSGT00940000159398 #21	ENSGT00950000182941.a.a.b.e.a.b #22	ENSGT00950000183163.a.a.ab #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.b #25	ENSGT00950000182986.b #26	ENSGT00390000004808.e #27	ENSGT00940000166129 #28	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a.a #32	ENSGT00990000204035 #33	ENSGT00940000156762 #34	ENSGT00940000157291 #35	ENSGT00390000015364.b #36	ENSGT00390000016054.b.i #37
Mangrove rivulus	MODERN SPECIES	73	fabp10a (ENSKMAG00000019147) #7	pnrc2 (ENSKMAG00000019136) #8	cnr2 (ENSKMAG00000019129) #9	akirin1 (ENSKMAG00000019113) #10	rhbdl2 (ENSKMAG00000019086) #11	ENSKMAG00000019064 #13	rragca (ENSKMAG00000019035)	pou3f1 (ENSKMAG00000019017) #14	utp11 (ENSKMAG00000018988) #15	FHL3 (ENSKMAG00000018962) #16	rspo1 (ENSKMAG00000018927) #17	gnl2 (ENSKMAG00000018855) #18	dnali1 (ENSKMAG00000018825) #19	SNIP1 (ENSKMAG00000018806) #20	MAP3K6 (ENSKMAG00000018751) #21	ENSKMAG00000018674 #22	ENSKMAG00000018581	nampt2 (ENSKMAG00000018545)	LDLRAD2 (ENSKMAG00000018524)	ENSKMAG00000018496	ENSKMAG00000018456	camk1ga (ENSKMAG00000018425)	USP48 (ENSKMAG00000018330)	ENSKMAG00000018292	cyb561d1 (ENSKMAG00000018272)	atxn7l2a (ENSKMAG00000018254)	sypl2a (ENSKMAG00000018238)	fbxo2 (ENSKMAG00000018221)	svbp (ENSKMAG00000018202)
Turquoise killifish	MODERN SPECIES	1614	MYOM3 (ENSNFUG00015020150)	ENSNFUG00015020175	FABP10A (ENSNFUG00015020177) #7	PNRC2 (ENSNFUG00015020180) #8	cnr2 (ENSNFUG00015020184) #9	ENSNFUG00015020185	ENSNFUG00015020190	POU3F1 (ENSNFUG00015020193) #14	utp11 (ENSNFUG00015020196) #15	FHL3 (ENSNFUG00015020200) #16	RSPO1 (ENSNFUG00015020203) #17	GNL2 (ENSNFUG00015020230) #18	DNALI1 (ENSNFUG00015020891) #19	SNIP1 (ENSNFUG00015020894) #20	MAP3K6 (ENSNFUG00015000154) #21	MAP7D1 (ENSNFUG00015000327) #22	THRAP3 (ENSNFUG00015000347) #23	SH3D21 (ENSNFUG00015000370) #24	EVA1BA (ENSNFUG00015000393) #25	STK40 (ENSNFUG00015000432) #26	CNFN (ENSNFUG00015000488) #28	MRPS15 (ENSNFUG00015000499) #29	GRIK3 (ENSNFUG00015000661) #31	ZC3H12A (ENSNFUG00015000897) #32	ENSNFUG00015000899 #33	INPP5B (ENSNFUG00015000938) #34	MTF1 (ENSNFUG00015001054) #35	YRDC (ENSNFUG00015001069) #36	MANEAL (ENSNFUG00015001077) #37	LIN28A (ENSNFUG00015001082)	MECR (ENSNFUG00015001090)
Cyprinodontoidei	ANCESTRAL SPECIES		ENSGT00530000063881.a.b #8	ENSGT01060000248564.a.b #9	ENSGT00940000158787 #10	ENSGT00940000159442 #11	ENSGT01090000260070.C.a #12	ENSGT00390000017974.nb #13	ENSGT00950000183031.A.a.a	ENSGT00940000165372 #14	ENSGT00390000005813 #15	ENSGT00950000183028.a.b.a #16	ENSGT00940000158871 #17	ENSGT00810000125524 #18	ENSGT00390000003012 #19	ENSGT00940000156553 #20	ENSGT00940000159398 #21	ENSGT00950000182941.a.a.b.e.a.b #22	ENSGT00950000183163.a.a.ab #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.b #25	ENSGT00950000182986.b #26	ENSGT00390000004808.e #27	ENSGT00940000166129 #28	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00530000068429	ENSGT00940000159465 #31	ENSGT00940000155107.a.a.a #32	ENSGT00990000204035 #33	ENSGT00600000085609	ENSGT00940000156762 #34	ENSGT00940000157291 #35
NAME_4	ANCESTRAL SPECIES	55	ENSGT00530000063881.a.b #8	ENSGT01060000248564.a.b #9	ENSGT00940000158787 #10	ENSGT00940000159442 #11	ENSGT01090000260070.C.a #12	ENSGT00390000017974.nb #13	ENSGT00950000183031.A.a.a	ENSGT00940000165372 #14	ENSGT00390000005813 #15	ENSGT00950000183028.a.b.a #16	ENSGT00940000158871 #17	ENSGT00810000125524 #18	ENSGT00390000003012 #19	ENSGT00940000156553 #20	ENSGT00940000159398 #21	ENSGT00950000182941.a.a.b.e.a.b #22	ENSGT00950000183163.a.a.ab #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.b #25	ENSGT00950000182986.b #26	ENSGT00390000004808.e #27	ENSGT00940000171773	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a.a #32	ENSGT00990000204035 #33	ENSGT00940000156762 #34	ENSGT00940000157291 #35	ENSGT00390000015364.b #36	ENSGT00390000016054.b.i #37
Mummichog	MODERN SPECIES	2410																MAP7D1 (ENSFHEG00000000983) #22	THRAP3 (ENSFHEG00000000989) #23	sh3d21 (ENSFHEG00000000996) #24	eva1ba (ENSFHEG00000001000) #25	STK40 (ENSFHEG00000001002) #26	OSCP1 (ENSFHEG00000001008) #27	ENSFHEG00000001010	mrps15 (ENSFHEG00000001013) #29	csf3r (ENSFHEG00000001015) #30	GRIK3 (ENSFHEG00000001018) #31	ZC3H12A (ENSFHEG00000001019) #32	INPP5B (ENSFHEG00000001022) #34	mtf1 (ENSFHEG00000001026) #35	yrdc (ENSFHEG00000001029) #36	MANEAL (ENSFHEG00000001033) #37	ENSFHEG00000001035 #37
Sheepshead minnow	MODERN SPECIES	118	pnrc2 (ENSCVAG00000018099) #8	cnr2 (ENSCVAG00000018091) #9	akirin1 (ENSCVAG00000018071) #10	rhbdl2 (ENSCVAG00000018052) #11	GJA9 (ENSCVAG00000018024) #12	ENSCVAG00000018007 #13	rragca (ENSCVAG00000017979)	pou3f1 (ENSCVAG00000017958) #14	utp11 (ENSCVAG00000000900) #15	FHL3 (ENSCVAG00000017747) #16	rspo1 (ENSCVAG00000000459) #17	gnl2 (ENSCVAG00000017712) #18	dnali1 (ENSCVAG00000017701) #19	snip1 (ENSCVAG00000017689)	MAP3K6 (ENSCVAG00000017684) #21	MAP7D1 (ENSCVAG00000017671) #22	THRAP3 (ENSCVAG00000017634) #23	sh3d21 (ENSCVAG00000017624) #24	eva1ba (ENSCVAG00000017604) #25	STK40 (ENSCVAG00000017594) #26	OSCP1 (ENSCVAG00000017554) #27	ENSCVAG00000017521	mrps15 (ENSCVAG00000017500) #29	csf3r (ENSCVAG00000017491) #30	GRIK3 (ENSCVAG00000017478) #31	ZC3H12A (ENSCVAG00000017420) #32	ENSCVAG00000017412 #33	INPP5B (ENSCVAG00000017401) #34	mtf1 (ENSCVAG00000017389) #35	yrdc (ENSCVAG00000017355) #36	MANEAL (ENSCVAG00000017347) #37
Poeciliinae	ANCESTRAL SPECIES		ENSGT00940000164147.a #7	ENSGT00530000063881.a.b #8	ENSGT01060000248564.a.b #9	ENSGT00940000158787 #10	ENSGT00940000159442 #11	ENSGT00390000017974.nb #13	ENSGT00950000183031.A.a.a	ENSGT00940000165372 #14	ENSGT00390000005813 #15	ENSGT00950000183028.a.b.a #16	ENSGT00940000158871 #17	ENSGT00810000125524 #18	ENSGT00390000003012 #19	ENSGT00940000156553 #20	ENSGT00940000159398 #21	ENSGT00950000182941.a.a.b.e.a.b #22	ENSGT00950000183163.a.a.ab #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.b #25	ENSGT00950000182986.b #26	ENSGT00390000004808.e #27	ENSGT00940000166129 #28	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00530000068429	ENSGT00940000159465 #31	ENSGT00940000155107.a.a.a #32	ENSGT00990000204035 #33	ENSGT00600000085609	ENSGT00940000156762 #34	ENSGT00940000157291 #35
Poecilia	ANCESTRAL SPECIES		ENSGT00940000164147.a #7	ENSGT00530000063881.a.b #8	ENSGT01060000248564.a.b #9	ENSGT00940000158787 #10	ENSGT00940000159442 #11	ENSGT00390000017974.nb #13	ENSGT00950000183031.A.a.a	ENSGT00940000165372 #14	ENSGT00390000005813 #15	ENSGT00950000183028.a.b.a #16	ENSGT00940000158871 #17	ENSGT00810000125524 #18	ENSGT00390000003012 #19	ENSGT00940000156553 #20	ENSGT00940000159398 #21	ENSGT00950000182941.a.a.b.e.a.b #22	ENSGT00950000183163.a.a.ab #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.b #25	ENSGT00950000182986.b #26	ENSGT00390000004808.e #27	ENSGT00940000166129 #28	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00530000068429	ENSGT00940000159465 #31	ENSGT00940000155107.a.a.a #32	ENSGT00990000204035 #33	ENSGT00600000085609	ENSGT00940000156762 #34	ENSGT00940000157291 #35
NAME_6	ANCESTRAL SPECIES	152												ENSGT00810000125524 #18	ENSGT00390000003012 #19	ENSGT00940000156553 #20	ENSGT00940000159398 #21	ENSGT00950000182941.a.a.b.e.a.b #22	ENSGT00950000183163.a.a.ab #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.b #25	ENSGT00950000182986.b #26	ENSGT00390000004808.e #27	ENSGT00940000171773	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00530000068429	ENSGT00940000159465 #31	ENSGT00940000155107.a.a.a #32	ENSGT00990000204035 #33	ENSGT00600000085609	ENSGT00940000156762 #34	ENSGT00940000157291 #35
Amazon molly	MODERN SPECIES	337												gnl2 (ENSPFOG00000012893) #18	dnali1 (ENSPFOG00000012981) #19	SNIP1 (ENSPFOG00000013016) #20	MAP3K6 (ENSPFOG00000013047) #21	MAP7D1 (ENSPFOG00000013255) #22	THRAP3 (ENSPFOG00000013297) #23	sh3d21 (ENSPFOG00000013375) #24	eva1ba (ENSPFOG00000013421) #25	STK40 (ENSPFOG00000013431) #26	OSCP1 (ENSPFOG00000013493) #27	ENSPFOG00000013535	mrps15 (ENSPFOG00000013553) #29	csf3r (ENSPFOG00000013594) #30	ENSPFOG00000022696	GRIK3 (ENSPFOG00000013674) #31	ZC3H12A (ENSPFOG00000013935) #32	ENSPFOG00000013949 #33	ENSPFOG00000022057	INPP5B (ENSPFOG00000013954) #34	mtf1 (ENSPFOG00000013962) #35
Sailfin molly	MODERN SPECIES	684												gnl2 (ENSPLAG00000012483) #18	dnali1 (ENSPLAG00000000807) #19	SNIP1 (ENSPLAG00000012467) #20	MAP3K6 (ENSPLAG00000012456) #21	MAP7D1 (ENSPLAG00000000527) #22	THRAP3 (ENSPLAG00000000635) #23	sh3d21 (ENSPLAG00000012341) #24	eva1ba (ENSPLAG00000012312) #25	STK40 (ENSPLAG00000012294) #26
Guppy	MODERN SPECIES	446	fabp10a (ENSPREG00000006252) #7	pnrc2 (ENSPREG00000006242) #8	cnr2 (ENSPREG00000006231) #9	akirin1 (ENSPREG00000006214) #10	rhbdl2 (ENSPREG00000006169) #11	ENSPREG00000006142 #13	rragca (ENSPREG00000006113)	pou3f1 (ENSPREG00000006101) #14	utp11 (ENSPREG00000006068) #15	FHL3 (ENSPREG00000006051) #16	rspo1 (ENSPREG00000006040) #17	gnl2 (ENSPREG00000005988) #18	dnali1 (ENSPREG00000005961) #19	snip1 (ENSPREG00000005952)	MAP3K6 (ENSPREG00000005903) #21	MAP7D1 (ENSPREG00000005854) #22	THRAP3 (ENSPREG00000005816) #23	sh3d21 (ENSPREG00000005794) #24	eva1ba (ENSPREG00000005771) #25	STK40 (ENSPREG00000005733) #26	OSCP1 (ENSPREG00000005686) #27	ENSPREG00000005621 #28	mrps15 (ENSPREG00000005592) #29	csf3r (ENSPREG00000005562) #30	GRIK3 (ENSPREG00000005481) #31	ZC3H12A (ENSPREG00000005453) #32	ENSPREG00000005442 #33	INPP5B (ENSPREG00000005365) #34	mtf1 (ENSPREG00000005331) #35	yrdc (ENSPREG00000005285) #36	MANEAL (ENSPREG00000005276) #37
Platyfish	MODERN SPECIES	17	fabp10a (ENSXMAG00000025668) #7	pnrc2 (ENSXMAG00000019531) #8	cnr2 (ENSXMAG00000013232) #9	akirin1 (ENSXMAG00000013230) #10	rhbdl2 (ENSXMAG00000002343) #11	ENSXMAG00000013229 #13	rragca (ENSXMAG00000026290)	pou3f1 (ENSXMAG00000019529) #14	utp11 (ENSXMAG00000013219) #15	FHL3 (ENSXMAG00000029691) #16	rspo1 (ENSXMAG00000028817) #17	gnl2 (ENSXMAG00000014898) #18	dnali1 (ENSXMAG00000014886) #19	SNIP1 (ENSXMAG00000014885) #20	ENSXMAG00000014853 #21	MAP7D1 (ENSXMAG00000014815) #22	THRAP3 (ENSXMAG00000014797) #23	sh3d21 (ENSXMAG00000001593) #24	eva1ba (ENSXMAG00000001589) #25	STK40 (ENSXMAG00000029028) #26	OSCP1 (ENSXMAG00000014752) #27	ENSXMAG00000024500 #28	mrps15 (ENSXMAG00000028874) #29	csf3r (ENSXMAG00000014732) #30	GRIK3 (ENSXMAG00000014647) #31	ZC3H12A (ENSXMAG00000014646) #32	ENSXMAG00000021281 #33	INPP5B (ENSXMAG00000014629) #34	mtf1 (ENSXMAG00000014614) #35	yrdc (ENSXMAG00000014606) #36	MANEAL (ENSXMAG00000014596) #37
Ovalentaria_B	ANCESTRAL SPECIES	1	ENSGT00530000063881.a.b #8	ENSGT01060000248564.a.b #9	ENSGT00940000158787 #10	ENSGT00940000159442 #11	ENSGT01090000260070.C.a #12	ENSGT00390000017974.nb #13	ENSGT00950000183031.A.a.a	ENSGT00940000165372 #14	ENSGT00390000005813 #15	ENSGT00950000183028.a.b.a #16	ENSGT00940000158871 #17	ENSGT00810000125524 #18	ENSGT00390000003012 #19	ENSGT00940000156553 #20	ENSGT00940000159398 #21	ENSGT00950000182941.a.a.b.e.a.b #22	ENSGT00950000183163.a.a.ab #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.b #25	ENSGT00950000182986.b #26	ENSGT00390000004808.e #27	ENSGT00940000166129 #28	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a.a #32	ENSGT00990000204035 #33	ENSGT00600000085609	ENSGT00990000203803	ENSGT00940000156762 #34	ENSGT00940000157291 #35
Pomacentridae	ANCESTRAL SPECIES	35	ENSGT00530000063881.a.b #8	ENSGT01060000248564.a.b #9	ENSGT00940000158787 #10	ENSGT00940000159442 #11	ENSGT01090000260070.C.a #12	ENSGT00390000017974.nb #13	ENSGT00950000183031.A.a.a	ENSGT00940000165372 #14	ENSGT00390000005813 #15	ENSGT00950000183028.a.b.a #16	ENSGT00940000158871 #17	ENSGT00810000125524 #18	ENSGT00390000003012 #19	ENSGT00940000156553.f #20	ENSGT00940000159398 #21	ENSGT00950000182941.a.a.b.e.a.b #22	ENSGT00950000183163.a.a.ab #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.b #25	ENSGT00950000182986.b #26	ENSGT00390000004808.e #27	ENSGT00940000166129 #28	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a.a #32	ENSGT00990000203803	ENSGT00990000204035 #33	ENSGT00940000156762 #34	ENSGT00940000157291 #35	ENSGT00390000015364.b #36
Pomacentridae_A	ANCESTRAL SPECIES	16	ENSGT00530000063881.a.b #8	ENSGT01060000248564.a.b #9	ENSGT00940000158787 #10	ENSGT00940000159442 #11	ENSGT01090000260070.C.a #12	ENSGT00390000017974.nb #13	ENSGT00950000183031.A.a.a	ENSGT00940000165372 #14	ENSGT00390000005813 #15	ENSGT00950000183028.a.b.a #16	ENSGT00940000158871 #17	ENSGT00810000125524 #18	ENSGT00390000003012 #19	ENSGT00940000156553.f #20	ENSGT00940000159398 #21	ENSGT00950000182941.a.a.b.e.a.b #22	ENSGT00950000183163.a.a.ab #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.b #25	ENSGT00950000182986.b #26	ENSGT00390000004808.e #27	ENSGT00940000166129 #28	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a.a #32	ENSGT00990000204035 #33	ENSGT00940000156762 #34	ENSGT00940000157291 #35	ENSGT00390000015364.b #36	ENSGT00390000016054.b.i #37
Amphiprion	ANCESTRAL SPECIES	1	ENSGT00530000063881.a.b #8	ENSGT01060000248564.a.b #9	ENSGT00940000158787 #10	ENSGT00940000159442 #11	ENSGT01090000260070.C.a #12	ENSGT00390000017974.nb #13	ENSGT00950000183031.A.a.a	ENSGT00940000165372 #14	ENSGT00390000005813 #15	ENSGT00950000183028.a.b.a #16	ENSGT00940000158871 #17	ENSGT00810000125524 #18	ENSGT00390000003012 #19	ENSGT00940000156553.f #20	ENSGT00940000159398 #21	ENSGT00950000182941.a.a.b.e.a.b #22	ENSGT00950000183163.a.a.ab #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.b #25	ENSGT00950000182986.b #26	ENSGT00390000004808.e #27	ENSGT00940000166129 #28	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a.a #32	ENSGT00990000203803	ENSGT00990000204035 #33	ENSGT00940000156762 #34	ENSGT00940000157291 #35	ENSGT00390000015364.b #36
Clown anemonefish	MODERN SPECIES	1296										FHL3 (ENSAOCG00000014316) #16	rspo1 (ENSAOCG00000014341) #17	gnl2 (ENSAOCG00000014396) #18	dnali1 (ENSAOCG00000014444) #19	SNIP1 (ENSAOCG00000014455) #20	MAP3K6 (ENSAOCG00000014625) #21	MAP7D1 (ENSAOCG00000014698) #22	THRAP3 (ENSAOCG00000014738) #23	sh3d21 (ENSAOCG00000000988) #24	eva1ba (ENSAOCG00000014770) #25	STK40 (ENSAOCG00000000999) #26	OSCP1 (ENSAOCG00000001002) #27	ENSAOCG00000001009 #28	mrps15 (ENSAOCG00000014871) #29	csf3r (ENSAOCG00000014880) #30	GRIK3 (ENSAOCG00000002707) #31	ZC3H12A (ENSAOCG00000014937) #32	ENSAOCG00000001847	ENSAOCG00000014980	INPP5B (ENSAOCG00000014998) #34	mtf1 (ENSAOCG00000015058) #35
Orange clownfish	MODERN SPECIES	21	pnrc2 (ENSAPEG00000004927) #8	cnr2 (ENSAPEG00000004941) #9	akirin1 (ENSAPEG00000005009) #10	rhbdl2 (ENSAPEG00000005028) #11	GJA9 (ENSAPEG00000005061) #12	MYCBP (ENSAPEG00000005073) #13	rragca (ENSAPEG00000005106)	pou3f1 (ENSAPEG00000005174) #14	utp11 (ENSAPEG00000005214) #15	FHL3 (ENSAPEG00000005272) #16	rspo1 (ENSAPEG00000005307) #17	gnl2 (ENSAPEG00000005375) #18	dnali1 (ENSAPEG00000005453) #19	SNIP1 (ENSAPEG00000005542) #20	MAP3K6 (ENSAPEG00000005570) #21	MAP7D1 (ENSAPEG00000005614) #22	THRAP3 (ENSAPEG00000005696) #23	sh3d21 (ENSAPEG00000005738) #24	eva1ba (ENSAPEG00000005773) #25	STK40 (ENSAPEG00000005892) #26	OSCP1 (ENSAPEG00000005918) #27	ENSAPEG00000005981 #28	mrps15 (ENSAPEG00000005965) #29	csf3r (ENSAPEG00000005997) #30	GRIK3 (ENSAPEG00000006019) #31	ZC3H12A (ENSAPEG00000006072) #32	ENSAPEG00000006078 #33	INPP5B (ENSAPEG00000006094) #34	mtf1 (ENSAPEG00000006125) #35	yrdc (ENSAPEG00000006164) #36	MANEAL (ENSAPEG00000006178) #37
Spiny chromis	MODERN SPECIES		SRSF10 (ENSAPOG00000024544)	pnrc2 (ENSAPOG00000024543) #8	cnr2 (ENSAPOG00000024541) #9	akirin1 (ENSAPOG00000024540) #10	rhbdl2 (ENSAPOG00000024538) #11	MYCBP (ENSAPOG00000024534) #13	rragca (ENSAPOG00000024532)	pou3f1 (ENSAPOG00000024530) #14	utp11 (ENSAPOG00000024525) #15	FHL3 (ENSAPOG00000024520) #16	rspo1 (ENSAPOG00000024512) #17	gnl2 (ENSAPOG00000024507) #18	dnali1 (ENSAPOG00000024495) #19	SNIP1 (ENSAPOG00000024490) #20	MAP3K6 (ENSAPOG00000024486) #21	MAP7D1 (ENSAPOG00000024474) #22	THRAP3 (ENSAPOG00000024453) #23	sh3d21 (ENSAPOG00000024442) #24	eva1ba (ENSAPOG00000024432) #25	STK40 (ENSAPOG00000024423) #26	OSCP1 (ENSAPOG00000024408) #27	ENSAPOG00000024397	mrps15 (ENSAPOG00000024393) #29	csf3r (ENSAPOG00000024384) #30	GRIK3 (ENSAPOG00000024373) #31	ZC3H12A (ENSAPOG00000024328) #32	ENSAPOG00000024319 #33	INPP5B (ENSAPOG00000024312) #34	mtf1 (ENSAPOG00000024298) #35	yrdc (ENSAPOG00000024293) #36	MANEAL (ENSAPOG00000024286) #37
Bicolor damselfish	MODERN SPECIES	1002								pou3f1 (ENSSPAG00000017202) #14	utp11 (ENSSPAG00000017221) #15	FHL3 (ENSSPAG00000017252) #16	rspo1 (ENSSPAG00000017297) #17	gnl2 (ENSSPAG00000017473) #18	dnali1 (ENSSPAG00000017535) #19	SNIP1 (ENSSPAG00000017549) #20	MAP3K6 (ENSSPAG00000017562) #21	MAP7D1 (ENSSPAG00000017601) #22	ENSSPAG00000017651 #23	sh3d21 (ENSSPAG00000017676) #24	eva1ba (ENSSPAG00000017702) #25
Cichlidae	ANCESTRAL SPECIES	9	ENSGT00940000154450.uc	ENSGT00530000063881.a.b #8	ENSGT01060000248564.a.b #9	ENSGT00940000158787 #10	ENSGT00940000159442 #11	ENSGT00390000017974.nb #13	ENSGT00950000183031.A.a.a	ENSGT00940000165372 #14	ENSGT00390000005813 #15	ENSGT00950000183028.a.b.a #16	ENSGT00940000158871 #17	ENSGT00810000125524 #18	ENSGT00390000003012 #19	ENSGT00940000156553 #20	ENSGT00940000159398 #21	ENSGT00950000182941.a.a.b.e.a.b #22	ENSGT00950000183163.a.a.ab #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.b #25	ENSGT00950000182986.b #26	ENSGT00390000004808.e #27	ENSGT00940000166129 #28	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a.a #32	ENSGT00990000204035 #33	ENSGT00600000085609	ENSGT00940000178211	ENSGT00940000156762 #34	ENSGT00940000157291 #35
Pseudocrenilabrinae	ANCESTRAL SPECIES	2	ENSGT00940000154450.uc	ENSGT00530000063881.a.b #8	ENSGT01060000248564.a.b #9	ENSGT00940000158787 #10	ENSGT00940000159442 #11	ENSGT00390000017974.nb #13	ENSGT00950000183031.A.a.a	ENSGT00940000165372 #14	ENSGT00390000005813 #15	ENSGT00950000183028.a.b.a #16	ENSGT00940000158871 #17	ENSGT00810000125524 #18	ENSGT00390000003012 #19	ENSGT00940000156553 #20	ENSGT00940000159398 #21	ENSGT00950000182941.a.a.b.e.a.b #22	ENSGT00950000183163.a.a.ab #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.b #25	ENSGT00950000182986.b #26	ENSGT00390000004808.e #27	ENSGT00940000166129 #28	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a.a #32	ENSGT00990000204035 #33	ENSGT00600000085609	ENSGT00940000178211	ENSGT00940000156762 #34	ENSGT00940000157291 #35
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	1	ENSGT00940000154450.uc	ENSGT00530000063881.a.b #8	ENSGT01060000248564.a.b #9	ENSGT00940000158787 #10	ENSGT00940000159442 #11	ENSGT00390000017974.nb #13	ENSGT00950000183031.A.a.a	ENSGT00940000165372 #14	ENSGT00390000005813 #15	ENSGT00950000183028.a.b.a #16	ENSGT00940000158871 #17	ENSGT00810000125524 #18	ENSGT00390000003012 #19	ENSGT00940000156553 #20	ENSGT00940000159398 #21	ENSGT00950000182941.a.a.b.e.a.b #22	ENSGT00950000183163.a.a.ab #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.b #25	ENSGT00950000182986.b #26	ENSGT00390000004808.e #27	ENSGT00940000166129 #28	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a.a #32	ENSGT00990000204035 #33	ENSGT00940000156762 #34	ENSGT00940000157291 #35	ENSGT00390000015364.b #36	ENSGT00390000016054.b.i #37
Haplochromini	ANCESTRAL SPECIES	6	ENSGT00530000063881.a.b #8	ENSGT01060000248564.a.b #9	ENSGT00940000158787 #10	ENSGT00940000159442 #11	ENSGT00390000017974.nb #13	ENSGT00950000183031.A.a.a	ENSGT00940000165372 #14	ENSGT00390000005813 #15	ENSGT00950000183028.a.b.a #16	ENSGT00940000158871 #17	ENSGT00940000166920	ENSGT00810000125524 #18	ENSGT00390000003012 #19	ENSGT00940000156553 #20	ENSGT00940000159398 #21	ENSGT00950000182941.a.a.b.e.a.b #22	ENSGT00950000183163.a.a.ab #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.b #25	ENSGT00950000182986.b #26	ENSGT00390000004808.e #27	ENSGT00940000166129 #28	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a.a #32	ENSGT00990000204035 #33	ENSGT00940000156762 #34	ENSGT00940000157291 #35	ENSGT00390000015364.b #36	ENSGT00390000016054.b.i #37
Haplochromini_A	ANCESTRAL SPECIES	18	ENSGT00530000063881.a.b #8	ENSGT01060000248564.a.b #9	ENSGT00940000158787 #10	ENSGT00940000159442 #11	ENSGT00390000017974.nb #13	ENSGT00950000183031.A.a.a	ENSGT00940000165372 #14	ENSGT00390000005813 #15	ENSGT00950000183028.a.b.a #16	ENSGT00940000158871 #17	ENSGT00940000166920	ENSGT00810000125524 #18	ENSGT00390000003012 #19	ENSGT00940000156553 #20	ENSGT00940000159398 #21	ENSGT00950000182941.a.a.b.e.a.b #22	ENSGT00950000183163.a.a.ab #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.b #25	ENSGT00950000182986.b #26	ENSGT00390000004808.e #27	ENSGT00940000166129 #28	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a.a #32	ENSGT00990000204035 #33	ENSGT00940000156762 #34	ENSGT00940000157291 #35	ENSGT00390000015364.b #36	ENSGT00390000016054.b.i #37
P. nyererei	MODERN SPECIES	362	SRSF10 (ENSPNYG00000012923)	pnrc2 (ENSPNYG00000012942) #8	cnr2 (ENSPNYG00000012954) #9	akirin1 (ENSPNYG00000012970) #10	rhbdl2 (ENSPNYG00000013006) #11	MYCBP (ENSPNYG00000013028) #13	rragca (ENSPNYG00000013099)	pou3f1 (ENSPNYG00000013130) #14	utp11 (ENSPNYG00000013140) #15	FHL3 (ENSPNYG00000013162) #16	rspo1 (ENSPNYG00000013177) #17	ENSPNYG00000013195	dnali1 (ENSPNYG00000013211) #19	SNIP1 (ENSPNYG00000013230) #20	ENSPNYG00000013247 #21	MAP7D1 (ENSPNYG00000013285) #22	THRAP3 (ENSPNYG00000013314) #23	sh3d21 (ENSPNYG00000013339) #24	eva1ba (ENSPNYG00000013357) #25	STK40 (ENSPNYG00000013365) #26	ENSPNYG00000013399 #27	ENSPNYG00000013414 #28	mrps15 (ENSPNYG00000013431) #29	csf3r (ENSPNYG00000013467) #30	GRIK3 (ENSPNYG00000013498) #31	ZC3H12A (ENSPNYG00000013534) #32	ENSPNYG00000013556	INPP5B (ENSPNYG00000013593) #34	mtf1 (ENSPNYG00000013739) #35	yrdc (ENSPNYG00000013956) #36	MANEAL (ENSPNYG00000013969) #37
Haplochromini_B	ANCESTRAL SPECIES	6	ENSGT00530000063881.a.b #8	ENSGT01060000248564.a.b #9	ENSGT00940000158787 #10	ENSGT00940000159442 #11	ENSGT00390000017974.nb #13	ENSGT00950000183031.A.a.a	ENSGT00940000165372 #14	ENSGT00390000005813 #15	ENSGT00950000183028.a.b.a #16	ENSGT00940000158871 #17	ENSGT00940000166920	ENSGT00810000125524 #18	ENSGT00390000003012 #19	ENSGT00940000156553 #20	ENSGT00940000159398 #21	ENSGT00950000182941.a.a.b.e.a.b #22	ENSGT00950000183163.a.a.ab #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.b #25	ENSGT00950000182986.b #26	ENSGT00390000004808.e #27	ENSGT00940000166129 #28	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a.a #32	ENSGT00990000204035 #33	ENSGT00940000156762 #34	ENSGT00940000157291 #35	ENSGT00390000015364.b #36	ENSGT00390000016054.b.i #37
Zebra mbuna	MODERN SPECIES	1093	ENSMZEG00005007618	ENSMZEG00005007606	xrcc1 (ENSMZEG00005007596)	drd2l (ENSMZEG00005007578)	ethe1 (ENSMZEG00005007552)	ethe1 (ENSMZEG00005007535)	ENSMZEG00005007520	ENSMZEG00005007501	irgq2 (ENSMZEG00005007489)	ENSMZEG00005007454	cox5aa (ENSMZEG00005007429)	gnl2 (ENSMZEG00005007393) #18	dnali1 (ENSMZEG00005007377) #19	SNIP1 (ENSMZEG00005007365) #20	ENSMZEG00005007342 #21	MAP7D1 (ENSMZEG00005007251) #22	THRAP3 (ENSMZEG00005007212) #23	sh3d21 (ENSMZEG00005007196) #24	eva1ba (ENSMZEG00005007187) #25	STK40 (ENSMZEG00005007149) #26	OSCP1 (ENSMZEG00005007120) #27	ENSMZEG00005007095 #28	mrps15 (ENSMZEG00005007070) #29	csf3r (ENSMZEG00005007036) #30	GRIK3 (ENSMZEG00005007006) #31	ZC3H12A (ENSMZEG00005006997) #32	ENSMZEG00005006991 #33	ENSMZEG00005006982	INPP5B (ENSMZEG00005006964) #34	mtf1 (ENSMZEG00005006956) #35	yrdc (ENSMZEG00005006948) #36
Eastern happy	MODERN SPECIES	2	SRSF10 (ENSACLG00000000662)	pnrc2 (ENSACLG00000000649) #8	cnr2 (ENSACLG00000000646) #9	akirin1 (ENSACLG00000000618) #10	rhbdl2 (ENSACLG00000000595) #11	MYCBP (ENSACLG00000000565) #13	rragca (ENSACLG00000000534)	pou3f1 (ENSACLG00000000389) #14	utp11 (ENSACLG00000000339) #15	FHL3 (ENSACLG00000000312) #16	rspo1 (ENSACLG00000000298) #17	dnali1 (ENSACLG00000000265) #19	ENSACLG00000000115	SNIP1 (ENSACLG00000000108) #20	ENSACLG00000000084 #21	MAP7D1 (ENSACLG00000000048) #22	ENSACLG00000027855	THRAP3 (ENSACLG00000027851) #23	sh3d21 (ENSACLG00000027848) #24	eva1ba (ENSACLG00000027847) #25	STK40 (ENSACLG00000027839) #26	OSCP1 (ENSACLG00000027829) #27	ENSACLG00000027824 #28	mrps15 (ENSACLG00000027820) #29	csf3r (ENSACLG00000027809) #30	GRIK3 (ENSACLG00000027806) #31	ZC3H12A (ENSACLG00000027801) #32	ENSACLG00000027799 #33	INPP5B (ENSACLG00000027782) #34	mtf1 (ENSACLG00000027779) #35	yrdc (ENSACLG00000027775) #36
Burton s mouthbrooder	MODERN SPECIES	340	SRSF10 (ENSHBUG00000010070)	pnrc2 (ENSHBUG00000010043) #8	cnr2 (ENSHBUG00000010030) #9	akirin1 (ENSHBUG00000010024) #10	rhbdl2 (ENSHBUG00000009992) #11	MYCBP (ENSHBUG00000009957) #13	rragca (ENSHBUG00000009931)	pou3f1 (ENSHBUG00000009911) #14	utp11 (ENSHBUG00000009895) #15	FHL3 (ENSHBUG00000009864) #16	rspo1 (ENSHBUG00000009811) #17	ENSHBUG00000000835	dnali1 (ENSHBUG00000009777) #19	SNIP1 (ENSHBUG00000009756) #20	ENSHBUG00000009741 #21	MAP7D1 (ENSHBUG00000009652) #22	THRAP3 (ENSHBUG00000009602) #23	sh3d21 (ENSHBUG00000009579) #24	eva1ba (ENSHBUG00000009558) #25	STK40 (ENSHBUG00000009547) #26	OSCP1 (ENSHBUG00000009513) #27	ENSHBUG00000009469 #28	mrps15 (ENSHBUG00000009456) #29	csf3r (ENSHBUG00000009429) #30	GRIK3 (ENSHBUG00000009396) #31	ZC3H12A (ENSHBUG00000009356) #32	INPP5B (ENSHBUG00000009350) #34	mtf1 (ENSHBUG00000009314) #35	yrdc (ENSHBUG00000009298) #36	MANEAL (ENSHBUG00000009290) #37	LIN28A (ENSHBUG00000009265)
Lyretail cichlid	MODERN SPECIES	311	ENSNBRG00000010616	pnrc2 (ENSNBRG00000010605) #8	cnr2 (ENSNBRG00000010586) #9	akirin1 (ENSNBRG00000010549) #10	rhbdl2 (ENSNBRG00000010511) #11	MYCBP (ENSNBRG00000010493) #13	rragca (ENSNBRG00000010467)	pou3f1 (ENSNBRG00000010456) #14	utp11 (ENSNBRG00000010435) #15	FHL3 (ENSNBRG00000010416) #16	rspo1 (ENSNBRG00000010347) #17	gnl2 (ENSNBRG00000010291) #18	dnali1 (ENSNBRG00000010268) #19	SNIP1 (ENSNBRG00000010257) #20	ENSNBRG00000010049 #21	MAP7D1 (ENSNBRG00000010005) #22	THRAP3 (ENSNBRG00000009991) #23	sh3d21 (ENSNBRG00000009956) #24	eva1ba (ENSNBRG00000009946) #25	STK40 (ENSNBRG00000009915) #26	OSCP1 (ENSNBRG00000009883) #27	ENSNBRG00000009860 #28	mrps15 (ENSNBRG00000009851) #29	csf3r (ENSNBRG00000009712) #30	ENSNBRG00000009681	GRIK3 (ENSNBRG00000009631) #31	ZC3H12A (ENSNBRG00000009607) #32	ENSNBRG00000009581	ENSNBRG00000009571 #34	ENSNBRG00000009559 #34	mtf1 (ENSNBRG00000009532) #35
Nile tilapia	MODERN SPECIES	2	ENSONIG00000028387	cnr2 (ENSONIG00000016314) #9	akirin1 (ENSONIG00000039753) #10	rhbdl2 (ENSONIG00000016311) #11	MYCBP (ENSONIG00000035578) #13	rragc (ENSONIG00000032190)	pou3f1 (ENSONIG00000021113) #14	utp11 (ENSONIG00000033069) #15	fhl3 (ENSONIG00000013661) #16	rspo1 (ENSONIG00000016302) #17	ENSONIG00000016291	dnali1 (ENSONIG00000016300) #19	SNIP1 (ENSONIG00000016290) #20	ENSONIG00000041284	ENSONIG00000016285 #21	MAP7D1 (ENSONIG00000016283) #22	THRAP3 (ENSONIG00000016278) #23	sh3d21 (ENSONIG00000016273) #24	eva1b (ENSONIG00000042590) #25	STK40 (ENSONIG00000037285) #26	OSCP1 (ENSONIG00000016265) #27	ENSONIG00000043059 #28	mrps15 (ENSONIG00000016261) #29	csf3r (ENSONIG00000016254) #30	GRIK3 (ENSONIG00000016238) #31	ZC3H12A (ENSONIG00000016235) #32	ENSONIG00000037129 #33	ENSONIG00000030694	INPP5B (ENSONIG00000016229) #34	mtf1 (ENSONIG00000016218) #35	yrdc (ENSONIG00000016213) #36
Midas cichlid	MODERN SPECIES	668	pnrc2 (ENSACIG00000018693) #8	cnr2 (ENSACIG00000018688) #9	akirin1 (ENSACIG00000018678) #10	rhbdl2 (ENSACIG00000018661) #11	ENSACIG00000018646	MYCBP (ENSACIG00000018598) #13	rragca (ENSACIG00000018548)	pou3f1 (ENSACIG00000018538) #14	utp11 (ENSACIG00000018523) #15	FHL3 (ENSACIG00000018508) #16	rspo1 (ENSACIG00000018378) #17	gnl2 (ENSACIG00000018346) #18	dnali1 (ENSACIG00000018337) #19	SNIP1 (ENSACIG00000018325) #20	ENSACIG00000018194 #21	MAP7D1 (ENSACIG00000018142) #22	THRAP3 (ENSACIG00000018110) #23	ENSACIG00000018107	sh3d21 (ENSACIG00000018083) #24	eva1ba (ENSACIG00000018069) #25	STK40 (ENSACIG00000018038) #26	OSCP1 (ENSACIG00000018007) #27	ENSACIG00000017948 #28	mrps15 (ENSACIG00000017933) #29	csf3r (ENSACIG00000017809) #30	GRIK3 (ENSACIG00000017772) #31	ZC3H12A (ENSACIG00000017750) #32	INPP5B (ENSACIG00000017714) #34	mtf1 (ENSACIG00000017387) #35	yrdc (ENSACIG00000017330) #36	MANEAL (ENSACIG00000017324) #37
Percomorphaceae_C	ANCESTRAL SPECIES	2	ENSGT00530000063881.a.b #8	ENSGT01060000248564.a.b #9	ENSGT00940000158787 #10	ENSGT00940000159442 #11	ENSGT01090000260070.C.a #12	ENSGT00390000017974.nb #13	ENSGT00950000183031.A.a.a	ENSGT00940000165372 #14	ENSGT00390000005813 #15	ENSGT00950000183028.a.b.a #16	ENSGT00940000158871 #17	ENSGT00810000125524 #18	ENSGT00390000003012 #19	ENSGT00940000156553 #20	ENSGT00940000159398 #21	ENSGT00950000182941.a.a.b.e.a.b #22	ENSGT00950000183163.a.a.ab #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.b #25	ENSGT00950000182986.b #26	ENSGT00390000004808.e #27	ENSGT00940000166129 #28	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00530000068429	ENSGT00940000159465 #31	ENSGT00940000155107.a.a.a #32	ENSGT00990000204035 #33	ENSGT00940000156762 #34	ENSGT00940000157291 #35	ENSGT00390000015364.b #36
Percomorphaceae_D	ANCESTRAL SPECIES	2	ENSGT00530000063881.a.b #8	ENSGT01060000248564.a.b #9	ENSGT00940000158787 #10	ENSGT00940000159442 #11	ENSGT01090000260070.C.a #12	ENSGT00390000017974.nb #13	ENSGT00950000183031.A.a.a	ENSGT00940000165372 #14	ENSGT00390000005813 #15	ENSGT00950000183028.a.b.a #16	ENSGT00940000158871 #17	ENSGT00810000125524 #18	ENSGT00390000003012 #19	ENSGT00940000156553 #20	ENSGT00940000159398 #21	ENSGT00950000182941.a.a.b.e.a.b #22	ENSGT00950000183163.a.a.ab #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.b #25	ENSGT00950000182986.b #26	ENSGT00390000004808.e #27	ENSGT00940000166129 #28	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a.a #32	ENSGT00990000204035 #33	ENSGT00990000203803	ENSGT00940000156762 #34	ENSGT00940000157291 #35	ENSGT00390000015364.b #36
Anabantaria	ANCESTRAL SPECIES	2	ENSGT00940000160519.a.a	ENSGT00530000063881.a.b #8	ENSGT01060000248564.a.b #9	ENSGT00940000158787 #10	ENSGT00940000159442 #11	ENSGT01090000260070.C.a #12	ENSGT00390000017974.nb #13	ENSGT00940000165372 #14	ENSGT00390000005813 #15	ENSGT00950000183028.a.b.a #16	ENSGT00940000158871 #17	ENSGT00810000125524 #18	ENSGT00390000003012 #19	ENSGT00940000156553 #20	ENSGT00940000159398 #21	ENSGT00950000182941.a.a.b.e.a.b #22	ENSGT00950000183163.a.a.ab #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.b #25	ENSGT00950000182986.b #26	ENSGT00390000004808.e #27	ENSGT00940000166129 #28	ENSGT00390000001737 #29	ENSGT00940000158915.u #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a.a #32	ENSGT00990000204035 #33	ENSGT00940000156762 #34	ENSGT00940000157291 #35	ENSGT00390000015364.b #36	ENSGT00390000016054.b.i #37
Anabantoidei	ANCESTRAL SPECIES	3	ENSGT00940000160519.a.a	ENSGT00530000063881.a.b #8	ENSGT01060000248564.a.b #9	ENSGT00940000158787 #10	ENSGT00940000159442 #11	ENSGT01090000260070.C.a #12	ENSGT00390000017974.nb #13	ENSGT00950000183031.A.a.a	ENSGT00390000005813 #15	ENSGT00950000183028.a.b.a #16	ENSGT00940000158871 #17	ENSGT00810000125524 #18	ENSGT00390000003012 #19	ENSGT00940000156553 #20	ENSGT00940000159398 #21	ENSGT00950000182941.a.a.b.e.a.b #22	ENSGT00950000183163.a.a.ab #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.b #25	ENSGT00950000182986.b #26	ENSGT00390000004808.e #27	ENSGT00940000166129 #28	ENSGT00390000001737 #29	ENSGT00940000158915.u #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a.a #32	ENSGT00990000204035 #33	ENSGT00940000156762 #34	ENSGT00940000157291 #35	ENSGT00390000015364.b #36	ENSGT00390000016054.b.i #37
Siamese fighting fish	MODERN SPECIES	7	SRSF10 (ENSBSLG00000020961)	pnrc2 (ENSBSLG00000020985) #8	cnr2 (ENSBSLG00000021011) #9	akirin1 (ENSBSLG00000021034) #10	rhbdl2 (ENSBSLG00000021070) #11	GJA9 (ENSBSLG00000021090) #12	MYCBP (ENSBSLG00000021126) #13	rragca (ENSBSLG00000021174)	utp11 (ENSBSLG00000021215) #15	FHL3 (ENSBSLG00000021242) #16	rspo1 (ENSBSLG00000021269) #17	gnl2 (ENSBSLG00000021296) #18	dnali1 (ENSBSLG00000021397) #19	SNIP1 (ENSBSLG00000021403) #20	ENSBSLG00000021441 #21	MAP7D1 (ENSBSLG00000021885) #22	THRAP3 (ENSBSLG00000021912) #23	sh3d21 (ENSBSLG00000021927) #24	eva1ba (ENSBSLG00000021956) #25	STK40 (ENSBSLG00000021978) #26	OSCP1 (ENSBSLG00000022030) #27	ENSBSLG00000022016	mrps15 (ENSBSLG00000022038) #29	csf3r (ENSBSLG00000022045) #30	GRIK3 (ENSBSLG00000022127) #31	ENSBSLG00000022266	ZC3H12A (ENSBSLG00000022267) #32	ENSBSLG00000022271 #33	INPP5B (ENSBSLG00000022431) #34	mtf1 (ENSBSLG00000022933) #35	yrdc (ENSBSLG00000022987) #36
Zig-zag eel	MODERN SPECIES	7	ENSMAMG00000008128 #7	ENSMAMG00000008111	pnrc2 (ENSMAMG00000008081) #8	cnr2 (ENSMAMG00000008073) #9	akirin1 (ENSMAMG00000008054) #10	rhbdl2 (ENSMAMG00000026530) #11	ENSMAMG00000008023 #13	rragca (ENSMAMG00000007964)	pou3f1 (ENSMAMG00000007950) #14	utp11 (ENSMAMG00000007927) #15	FHL3 (ENSMAMG00000007894) #16	rspo1 (ENSMAMG00000007882) #17	gnl2 (ENSMAMG00000007823) #18	dnali1 (ENSMAMG00000027064) #19	ENSMAMG00000007781 #21	MAP7D1 (ENSMAMG00000007741) #22	THRAP3 (ENSMAMG00000007707) #23	sh3d21 (ENSMAMG00000007666) #24	eva1ba (ENSMAMG00000007649) #25	STK40 (ENSMAMG00000007611) #26	OSCP1 (ENSMAMG00000007603) #27	ENSMAMG00000007593	mrps15 (ENSMAMG00000007572) #29	csf3r (ENSMAMG00000007544) #30	GRIK3 (ENSMAMG00000007505) #31	ZC3H12A (ENSMAMG00000007494) #32	INPP5B (ENSMAMG00000007345) #34	mtf1 (ENSMAMG00000007324) #35	yrdc (ENSMAMG00000028078) #36	MANEAL (ENSMAMG00000007300) #37	ENSMAMG00000007271
Carangaria	ANCESTRAL SPECIES	1	ENSGT00530000063881.a.b #8	ENSGT01060000248564.a.b #9	ENSGT00940000158787 #10	ENSGT00940000159442 #11	ENSGT01090000260070.C.a #12	ENSGT00390000017974.nb #13	ENSGT00950000183031.A.a.a	ENSGT00940000165372 #14	ENSGT00390000005813 #15	ENSGT00950000183028.a.b.a #16	ENSGT00940000158871 #17	ENSGT00810000125524 #18	ENSGT00390000003012 #19	ENSGT00940000156553 #20	ENSGT00940000159398 #21	ENSGT00950000182941.a.a.b.e.a.b #22	ENSGT00950000183163.a.a.ab #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.b #25	ENSGT00950000182986.b #26	ENSGT00390000004808.e #27	ENSGT00940000166129 #28	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a.a #32	ENSGT00990000203803	ENSGT00940000156762 #34	ENSGT00940000157291 #35	ENSGT00390000015364.b #36	ENSGT00390000016054.b.i #37
Carangaria_A	ANCESTRAL SPECIES	27	ENSGT00530000063881.a.b #8	ENSGT01060000248564.a.b #9	ENSGT00940000158787 #10	ENSGT00940000159442 #11	ENSGT01090000260070.C.a #12	ENSGT00390000017974.nb #13	ENSGT00950000183031.A.a.a	ENSGT00940000165372 #14	ENSGT00390000005813 #15	ENSGT00950000183028.a.b.a #16	ENSGT00940000158871 #17	ENSGT00810000125524 #18	ENSGT00390000003012 #19	ENSGT00940000156553 #20	ENSGT00940000159398 #21	ENSGT00950000182941.a.a.b.e.a.b #22	ENSGT00950000183163.a.a.ab #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.b #25	ENSGT00950000182986.b #26	ENSGT00390000004808.e #27	ENSGT00940000166129 #28	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a.a #32	ENSGT00990000203803	ENSGT00940000156762 #34	ENSGT00940000157291 #35	ENSGT00390000015364.b #36	ENSGT00390000016054.b.i #37
Barramundi perch	MODERN SPECIES	104	pnrc2 (ENSLCAG00010003408) #8	cnr2 (ENSLCAG00010003413) #9	akirin1 (ENSLCAG00010003420) #10	rhbdl2 (ENSLCAG00010003426) #11	GJA9 (ENSLCAG00010003430) #12	ENSLCAG00010003436 #13	rragca (ENSLCAG00010003445)	pou3f1 (ENSLCAG00010003450) #14	utp11 (ENSLCAG00010003455) #15	FHL3 (ENSLCAG00010003463) #16	rspo1 (ENSLCAG00010003470) #17	gnl2 (ENSLCAG00010003490) #18	dnali1 (ENSLCAG00010003510) #19	snip1 (ENSLCAG00010003515)	ENSLCAG00010003538 #21	MAP7D1 (ENSLCAG00010003586) #22	THRAP3 (ENSLCAG00010003595) #23	sh3d21 (ENSLCAG00010003598) #24	eva1ba (ENSLCAG00010003602) #25	STK40 (ENSLCAG00010003605) #26	OSCP1 (ENSLCAG00010003615) #27	ENSLCAG00010003627 #28	mrps15 (ENSLCAG00010003634) #29	CSF3R (ENSLCAG00010003642) #30
Seriola	ANCESTRAL SPECIES	48	ENSGT00530000063881.a.b #8	ENSGT01060000248564.a.b #9	ENSGT00940000158787 #10	ENSGT00940000159442 #11	ENSGT01090000260070.C.a #12	ENSGT00390000017974.nb #13	ENSGT00950000183031.A.a.a	ENSGT00940000165372 #14	ENSGT00390000005813 #15	ENSGT00950000183028.a.b.a #16	ENSGT00940000158871 #17	ENSGT00810000125524 #18	ENSGT00390000003012 #19	ENSGT00940000156553 #20	ENSGT00940000159398 #21	ENSGT00950000182941.a.a.b.e.a.b #22	ENSGT00950000183163.a.a.ab #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.b #25	ENSGT00950000182986.b #26	ENSGT00390000004808.e #27	ENSGT00940000166129 #28	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a.a #32	ENSGT00990000203803	ENSGT00940000156762 #34	ENSGT00940000157291 #35	ENSGT00390000015364.b #36	ENSGT00390000016054.b.i #37
Greater amberjack	MODERN SPECIES	154	pnrc2 (ENSSDUG00000010643) #8	cnr2 (ENSSDUG00000010638) #9	akirin1 (ENSSDUG00000010616) #10	rhbdl2 (ENSSDUG00000010587) #11	GJA9 (ENSSDUG00000010578) #12	ENSSDUG00000010570 #13	rragca (ENSSDUG00000010543)	pou3f1 (ENSSDUG00000010532) #14	utp11 (ENSSDUG00000010501) #15	FHL3 (ENSSDUG00000010483) #16	rspo1 (ENSSDUG00000010472) #17	gnl2 (ENSSDUG00000010382) #18	dnali1 (ENSSDUG00000010345) #19	SNIP1 (ENSSDUG00000010325) #20	MAP3K6 (ENSSDUG00000010287) #21	MAP7D1 (ENSSDUG00000010208) #22	THRAP3 (ENSSDUG00000010132) #23	sh3d21 (ENSSDUG00000010098) #24	eva1ba (ENSSDUG00000010078) #25	STK40 (ENSSDUG00000010024) #26	OSCP1 (ENSSDUG00000009984) #27	ENSSDUG00000009969 #28	mrps15 (ENSSDUG00000009946) #29	csf3r (ENSSDUG00000009924) #30	GRIK3 (ENSSDUG00000009891) #31	ZC3H12A (ENSSDUG00000009879) #32	ENSSDUG00000009859	INPP5B (ENSSDUG00000009812) #34	mtf1 (ENSSDUG00000009784) #35	yrdc (ENSSDUG00000009775) #36	MANEAL (ENSSDUG00000009753) #37
Pleuronectoidei	ANCESTRAL SPECIES	3	ENSGT00940000154450.uc	ENSGT00530000063881.a.b #8	ENSGT01060000248564.a.b #9	ENSGT00940000158787 #10	ENSGT00940000159442 #11	ENSGT01090000260070.C.a #12	ENSGT00390000017974.nb #13	ENSGT00940000165372 #14	ENSGT00390000005813 #15	ENSGT00950000183028.a.b.a #16	ENSGT00940000158871 #17	ENSGT00810000125524 #18	ENSGT00390000003012 #19	ENSGT00940000156553 #20	ENSGT00940000159398 #21	ENSGT00950000182941.a.a.b.e.a.b #22	ENSGT00950000183163.a.a.ab #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.b #25	ENSGT00950000182986.b #26	ENSGT00390000004808.e #27	ENSGT01030000235168	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a.a #32	ENSGT00940000178211	ENSGT00940000156762 #34	ENSGT00940000157291 #35	ENSGT00390000015364.b #36	ENSGT00390000016054.b.i #37
Tongue sole	MODERN SPECIES	4	pnrc2 (ENSCSEG00000020261) #8	cnr2 (ENSCSEG00000020263) #9	akirin1 (ENSCSEG00000020264) #10	rhbdl2 (ENSCSEG00000020266) #11	GJA9 (ENSCSEG00000020269) #12	ENSCSEG00000020270	rragca (ENSCSEG00000020277)	pou3f1 (ENSCSEG00000020279) #14	utp11 (ENSCSEG00000020281) #15	FHL3 (ENSCSEG00000020285) #16	rspo1 (ENSCSEG00000020287) #17	gnl2 (ENSCSEG00000020296) #18	dnali1 (ENSCSEG00000020307) #19	snip1 (ENSCSEG00000020310)	ENSCSEG00000020313 #21	MAP7D1 (ENSCSEG00000020319) #22	ENSCSEG00000020325 #23	sh3d21 (ENSCSEG00000020331) #24	ENSCSEG00000020336	ENSCSEG00000020343	selenbp1 (ENSCSEG00000020362)	pogzb (ENSCSEG00000020370)	ENSCSEG00000020374	plekho1b (ENSCSEG00000020399)	ENSCSEG00000020402	ENSCSEG00000020409	ENSCSEG00000020416	ENSCSEG00000020420	iqgap3 (ENSCSEG00000020426)	ANKRD34A (ENSCSEG00000020436)	gon4lb (ENSCSEG00000020441)
Turbot	MODERN SPECIES		cnr2 (ENSSMAG00000003186) #9	akirin1 (ENSSMAG00000003202) #10	rhbdl2 (ENSSMAG00000003252) #11	GJA9 (ENSSMAG00000003266) #12	ENSSMAG00000003287 #13	rragca (ENSSMAG00000003327)	pou3f1 (ENSSMAG00000003341) #14	ENSSMAG00000035984	utp11 (ENSSMAG00000003346) #15	FHL3 (ENSSMAG00000027104) #16	rspo1 (ENSSMAG00000003444) #17	gnl2 (ENSSMAG00000003472) #18	dnali1 (ENSSMAG00000003563) #19	SNIP1 (ENSSMAG00000003570) #20	ENSSMAG00000003583 #21	MAP7D1 (ENSSMAG00000003648) #22	THRAP3 (ENSSMAG00000003703) #23	sh3d21 (ENSSMAG00000003747) #24	eva1ba (ENSSMAG00000023907) #25	STK40 (ENSSMAG00000003802) #26	OSCP1 (ENSSMAG00000003827) #27	ENSSMAG00000003843	mrps15 (ENSSMAG00000003899) #29	csf3r (ENSSMAG00000003925) #30	GRIK3 (ENSSMAG00000005100) #31	ZC3H12A (ENSSMAG00000005140) #32	INPP5B (ENSSMAG00000005147) #34	mtf1 (ENSSMAG00000005172) #35	yrdc (ENSSMAG00000005195) #36	MANEAL (ENSSMAG00000005209) #37	ENSSMAG00000005221
Eupercaria	ANCESTRAL SPECIES	1	ENSGT01060000248564.a.b #9	ENSGT00940000158787 #10	ENSGT00940000159442 #11	ENSGT01030000235133	ENSGT01090000260070.C.a #12	ENSGT00390000017974.nb #13	ENSGT00950000183031.A.a.a	ENSGT00940000165372 #14	ENSGT00390000005813 #15	ENSGT00950000183028.a.b.a #16	ENSGT00940000158871 #17	ENSGT00810000125524 #18	ENSGT00390000003012 #19	ENSGT00940000156553 #20	ENSGT00940000159398 #21	ENSGT00950000182941.a.a.b.e.a.b #22	ENSGT00950000183163.a.a.ab #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.b #25	ENSGT00950000182986.b #26	ENSGT00390000004808.e #27	ENSGT00940000166129 #28	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00530000068429	ENSGT00940000159465 #31	ENSGT00940000155107.a.a.a #32	ENSGT00990000204035 #33	ENSGT00940000156762 #34	ENSGT00940000157291 #35	ENSGT00390000015364.b #36
Tetraodontidae	ANCESTRAL SPECIES	49	ENSGT00940000164147.a #7	ENSGT00530000063881.a.b #8	ENSGT01060000248564.a.b #9	ENSGT00940000158787 #10	ENSGT00940000159442 #11	ENSGT01090000260070.C.a #12	ENSGT00390000017974.nb #13	ENSGT00950000183031.A.a.a	ENSGT00940000165372 #14	ENSGT00390000005813 #15	ENSGT00950000183028.a.b.a #16	ENSGT00940000158871 #17	ENSGT00810000125524 #18	ENSGT00390000003012.x.a #19	ENSGT00940000159398 #21	ENSGT00950000182941.a.a.b.e.a.b #22	ENSGT00950000183163.a.a.ab #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.b #25	ENSGT00950000182986.b #26	ENSGT00390000004808.e #27	ENSGT00940000166129 #28	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31
Fugu	MODERN SPECIES	19	fabp10a (ENSTRUG00000019589) #7	pnrc2 (ENSTRUG00000022856) #8	cnr2 (ENSTRUG00000008915) #9	akirin1 (ENSTRUG00000024601) #10	rhbdl2 (ENSTRUG00000009100) #11	GJA9 (ENSTRUG00000033096) #12	ENSTRUG00000020122 #13	rragca (ENSTRUG00000009237)	pou3f1 (ENSTRUG00000009356) #14	utp11 (ENSTRUG00000009375) #15	FHL3 (ENSTRUG00000009493) #16	rspo1 (ENSTRUG00000009686) #17	gnl2 (ENSTRUG00000009789) #18	dnali1 (ENSTRUG00000010122) #19	ENSTRUG00000010218 #21	MAP7D1 (ENSTRUG00000010556) #22	THRAP3 (ENSTRUG00000010702) #23	sh3d21 (ENSTRUG00000010927) #24	eva1ba (ENSTRUG00000010950) #25	STK40 (ENSTRUG00000010973) #26	OSCP1 (ENSTRUG00000011056) #27	ENSTRUG00000021423 #28	mrps15 (ENSTRUG00000011129) #29	CSF3R (ENSTRUG00000011157) #30	GRIK3 (ENSTRUG00000011437) #31	ENSTRUG00000027138	pbx2 (ENSTRUG00000011925)	dnase2 (ENSTRUG00000012127)	rgl2 (ENSTRUG00000012178)	ENSTRUG00000021243	SYNGAP1 (ENSTRUG00000012329)
Tetraodon	MODERN SPECIES	26	ENSTNIG00000014963	rad51c (ENSTNIG00000014964)	ENSTNIG00000014965	ENSTNIG00000002273	XPO1 (ENSTNIG00000003360)	cct4 (ENSTNIG00000003361)	pus10 (ENSTNIG00000003362)	ENSTNIG00000005303	ENSTNIG00000000317	ENSTNIG00000005304	ENSTNIG00000005305	ENSTNIG00000003614	abcd1 (ENSTNIG00000006189)	gnl2 (ENSTNIG00000003733) #18	dnali1 (ENSTNIG00000003732) #19	ENSTNIG00000012195 #22	THRAP3 (ENSTNIG00000012194) #23	sh3d21 (ENSTNIG00000012193) #24	STK40 (ENSTNIG00000012192) #26	OSCP1 (ENSTNIG00000012191) #27	mrps15 (ENSTNIG00000012190) #29	CSF3R (ENSTNIG00000001409) #30	GRIK3 (ENSTNIG00000012189) #31	PIEZO1 (ENSTNIG00000003588)	ENSTNIG00000003589	ENSTNIG00000003590	ENSTNIG00000003591	ENSTNIG00000003592	tm9sf2 (ENSTNIG00000003593)	SYNGAP1 (ENSTNIG00000010304)	smg5 (ENSTNIG00000010303)
Eupecaria_A	ANCESTRAL SPECIES	2	ENSGT01060000248564.a.b #9	ENSGT00940000158787 #10	ENSGT00940000159442 #11	ENSGT01030000235133	ENSGT01090000260070.C.a #12	ENSGT00390000017974.nb #13	ENSGT00950000183031.A.a.a	ENSGT00940000165372 #14	ENSGT00390000005813 #15	ENSGT00950000183028.a.b.a #16	ENSGT00940000158871 #17	ENSGT00810000125524 #18	ENSGT00390000003012 #19	ENSGT00940000156553 #20	ENSGT00940000159398 #21	ENSGT00950000182941.a.a.b.e.a.b #22	ENSGT00950000183163.a.a.ab #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.b #25	ENSGT00950000182986.b #26	ENSGT00390000004808.e #27	ENSGT00940000166129 #28	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00530000068429	ENSGT00940000159465 #31	ENSGT00940000155107.a.a.a #32	ENSGT00990000204035 #33	ENSGT00940000156762 #34	ENSGT00940000157291 #35	ENSGT00390000015364.b #36
Ballan wrasse	MODERN SPECIES	58	akirin1 (ENSLBEG00000008199) #10	rhbdl2 (ENSLBEG00000008248) #11	ENSLBEG00000008283	GJA9 (ENSLBEG00000008301) #12	ENSLBEG00000008336	rragca (ENSLBEG00000008360)	pou3f1 (ENSLBEG00000008388) #14	utp11 (ENSLBEG00000008407) #15	FHL3 (ENSLBEG00000008447) #16	rspo1 (ENSLBEG00000008477) #17	gnl2 (ENSLBEG00000008518) #18	dnali1 (ENSLBEG00000008589) #19	ENSLBEG00000008632	ENSLBEG00000008644 #21	ENSLBEG00000008678 #21	MAP7D1 (ENSLBEG00000008723) #22	THRAP3 (ENSLBEG00000008813) #23	sh3d21 (ENSLBEG00000008879) #24	eva1ba (ENSLBEG00000008911) #25	ENSLBEG00000008935	STK40 (ENSLBEG00000008958) #26	OSCP1 (ENSLBEG00000009007) #27	ENSLBEG00000009056 #28	mrps15 (ENSLBEG00000009087) #29	CSF3R (ENSLBEG00000009161) #30	GRIK3 (ENSLBEG00000009256) #31
Eupecaria_B	ANCESTRAL SPECIES	4	ENSGT00530000063881.a.b #8	ENSGT01060000248564.a.b #9	ENSGT00940000158787 #10	ENSGT00940000159442 #11	ENSGT01090000260070.C.a #12	ENSGT00390000017974.nb #13	ENSGT00950000183031.A.a.a	ENSGT00940000165372 #14	ENSGT00390000005813 #15	ENSGT00950000183028.a.b.a #16	ENSGT00940000158871 #17	ENSGT00810000125524 #18	ENSGT00390000003012 #19	ENSGT00940000156553 #20	ENSGT00940000159398 #21	ENSGT00950000182941.a.a.b.e.a.b #22	ENSGT00950000183163.a.a.ab #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.b #25	ENSGT00950000182986.b #26	ENSGT00390000004808.e #27	ENSGT00940000166129 #28	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00530000068429	ENSGT00940000159465 #31	ENSGT00940000155107.a.a.a #32	ENSGT00990000204035 #33	ENSGT00940000156762 #34	ENSGT00940000157291 #35	ENSGT00390000015364.b #36
Eupecaria_C	ANCESTRAL SPECIES	2	ENSGT00940000154450.uc	ENSGT00530000063881.a.b #8	ENSGT01060000248564.a.b #9	ENSGT00940000158787 #10	ENSGT00940000159442 #11	ENSGT01090000260070.C.a #12	ENSGT00390000017974.nb #13	ENSGT00950000183031.A.a.a	ENSGT00940000165372 #14	ENSGT00390000005813 #15	ENSGT00950000183028.a.b.a #16	ENSGT00940000158871 #17	ENSGT00810000125524 #18	ENSGT00390000003012 #19	ENSGT00940000159398 #21	ENSGT00950000182941.a.a.b.e.a.b #22	ENSGT00950000183163.a.a.ab #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.b #25	ENSGT00950000182986.b #26	ENSGT00390000004808.e #27	ENSGT00940000166129 #28	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a.a #32	ENSGT00990000204035 #33	ENSGT00940000156762 #34	ENSGT00940000157291 #35	ENSGT00390000015364.b #36	ENSGT00390000016054.b.i #37
Gilthead seabream	MODERN SPECIES	8	pnrc2 (ENSSAUG00010015052) #8	cnr2 (ENSSAUG00010015051) #9	akirin1 (ENSSAUG00010015045) #10	rhbdl2 (ENSSAUG00010015042) #11	GJA9 (ENSSAUG00010015040) #12	ENSSAUG00010015039 #13	rragca (ENSSAUG00010015034)	pou3f1 (ENSSAUG00010015032) #14	utp11 (ENSSAUG00010015030) #15	FHL3 (ENSSAUG00010015024) #16	rspo1 (ENSSAUG00010015022) #17	gnl2 (ENSSAUG00010015013) #18	dnali1 (ENSSAUG00010015007) #19	snip1 (ENSSAUG00010015005)	MAP3K6 (ENSSAUG00010020734) #21	MAP7D1 (ENSSAUG00010020726) #22	THRAP3 (ENSSAUG00010020723) #23	sh3d21 (ENSSAUG00010020721) #24	eva1ba (ENSSAUG00010020720) #25	STK40 (ENSSAUG00010020718) #26	OSCP1 (ENSSAUG00010020717) #27	ENSSAUG00010020716 #28	mrps15 (ENSSAUG00010020715) #29	csf3r (ENSSAUG00010020713) #30	GRIK3 (ENSSAUG00010017988) #31	ZC3H12A (ENSSAUG00010017948) #32	ENSSAUG00010017943 #33	INPP5B (ENSSAUG00010017637) #34	mtf1 (ENSSAUG00010017599) #35	yrdc (ENSSAUG00010017597) #36	MANEAL (ENSSAUG00010017595) #37
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	2	ENSGT00940000164147.a #7	ENSGT00940000154450.uc	ENSGT00530000063881.a.b #8	ENSGT01060000248564.a.b #9	ENSGT00940000158787 #10	ENSGT00940000159442 #11	ENSGT01090000260070.C.a #12	ENSGT00390000017974.nb #13	ENSGT00940000165372 #14	ENSGT00390000005813 #15	ENSGT00950000183028.a.b.a #16	ENSGT00940000158871 #17	ENSGT00810000125524 #18	ENSGT00390000003012 #19	ENSGT00940000159398 #21	ENSGT00950000182941.a.a.b.e.a.b #22	ENSGT00950000183163.a.a.ab #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.b #25	ENSGT00950000182986.b #26	ENSGT00390000004808.e #27	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a.a #32	ENSGT00990000204035 #33	ENSGT00940000156762 #34	ENSGT00940000157291 #35	ENSGT00390000015364.b #36	ENSGT00390000016054.b.i #37	ENSGT00940000153295.a.a
European seabass	MODERN SPECIES	6	pnrc2 (ENSDLAG00005027869) #8	ENSDLAG00005007393 #7	SRSF10 (ENSDLAG00005029184)	cnr2 (ENSDLAG00005033223) #9	rhbdl2 (ENSDLAG00005007466) #11	GJA9 (ENSDLAG00005007475) #12	ENSDLAG00005029266 #13	rragca (ENSDLAG00005007481)	pou3f1 (ENSDLAG00005029296) #14	utp11 (ENSDLAG00005007490) #15	FHL3 (ENSDLAG00005007500) #16	rspo1 (ENSDLAG00005007510) #17	gnl2 (ENSDLAG00005007540) #18	dnali1 (ENSDLAG00005034656) #19	ENSDLAG00005008475 #21	MAP7D1 (ENSDLAG00005009499) #22	THRAP3 (ENSDLAG00005009555) #23	sh3d21 (ENSDLAG00005009583) #24	eva1ba (ENSDLAG00005029823) #25	STK40 (ENSDLAG00005009633) #26	OSCP1 (ENSDLAG00005009654) #27	mrps15 (ENSDLAG00005030986) #29	csf3r (ENSDLAG00005009735) #30	GRIK3 (ENSDLAG00005009845) #31	ZC3H12A (ENSDLAG00005011869) #32	ENSDLAG00005032500 #33	INPP5B (ENSDLAG00005011892) #34	mtf1 (ENSDLAG00005012917) #35	MANEAL (ENSDLAG00005027752) #37	yrdc (ENSDLAG00005013053) #36	ENSDLAG00005034052
Large yellow croaker	MODERN SPECIES	484	scn1ba (ENSLCRG00005010222)	ENSLCRG00005010153	si:ch211-225p5.8 (ENSLCRG00005010109)	KCNE1 (ENSLCRG00005010097)	dnajc28 (ENSLCRG00005010096)	ENSLCRG00005010093	rragca (ENSLCRG00005010089)	pou3f1 (ENSLCRG00005010081) #14	utp11 (ENSLCRG00005010070) #15	FHL3 (ENSLCRG00005010057) #16	rspo1 (ENSLCRG00005010051) #17	gnl2 (ENSLCRG00005010011) #18	dnali1 (ENSLCRG00005009982) #19	snip1 (ENSLCRG00005009965)	ENSLCRG00005006336 #21	MAP7D1 (ENSLCRG00005005931) #22	THRAP3 (ENSLCRG00005005916) #23	sh3d21 (ENSLCRG00005005906) #24	eva1ba (ENSLCRG00005005900) #25	STK40 (ENSLCRG00005005869) #26	OSCP1 (ENSLCRG00005005741) #27	ENSLCRG00005005712	mrps15 (ENSLCRG00005005702) #29	csf3r (ENSLCRG00005005672) #30	GRIK3 (ENSLCRG00005005377) #31	ZC3H12A (ENSLCRG00005005327) #32	ENSLCRG00005005318 #33	INPP5B (ENSLCRG00005003620) #34	mtf1 (ENSLCRG00005003083) #35	yrdc (ENSLCRG00005002976) #36	MANEAL (ENSLCRG00005012059) #37
Perciformes	ANCESTRAL SPECIES	3	ENSGT00530000063881.a.b #8	ENSGT01060000248564.a.b #9	ENSGT00940000158787 #10	ENSGT00940000159442 #11	ENSGT01090000260070.C.a #12	ENSGT00390000017974.nb #13	ENSGT00950000183031.A.a.a	ENSGT00940000165372 #14	ENSGT00390000005813 #15	ENSGT00950000183028.a.b.a #16	ENSGT00940000158871 #17	ENSGT00810000125524 #18	ENSGT00390000003012 #19	ENSGT00940000156553 #20	ENSGT00940000159398 #21	ENSGT00950000182941.a.a.b.e.a.b #22	ENSGT00950000183163.a.a.ab #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.b #25	ENSGT00950000182986.b #26	ENSGT00390000004808.e #27	ENSGT00940000166129 #28	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00530000068429	ENSGT00940000159465 #31	ENSGT00940000155107.a.a.a #32	ENSGT00990000204035 #33	ENSGT00940000156762 #34	ENSGT00940000157291 #35	ENSGT00390000015364.b #36
Perciformes_a	ANCESTRAL SPECIES	3	ENSGT00940000154450.uc	ENSGT00530000063881.a.b #8	ENSGT01060000248564.a.b #9	ENSGT00940000158787 #10	ENSGT00940000159442 #11	ENSGT01090000260070.C.a #12	ENSGT00390000017974.nb #13	ENSGT00940000165372 #14	ENSGT00390000005813 #15	ENSGT00950000183028.a.b.a #16	ENSGT00940000158871 #17	ENSGT00810000125524 #18	ENSGT00390000003012 #19	ENSGT00940000156553 #20	ENSGT00940000159398 #21	ENSGT00950000182941.a.a.b.e.a.b #22	ENSGT00950000183163.a.a.ab #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.b #25	ENSGT00950000182986.b #26	ENSGT00390000004808.e #27	ENSGT00940000166129 #28	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a.a #32	ENSGT00940000156762 #34	ENSGT00940000157291 #35	ENSGT00390000015364.b #36	ENSGT00390000016054.b.i #37	ENSGT00940000153295.a.a
Pike perch	MODERN SPECIES	116													dnali1 (ENSSLUG00000005235) #19	snip1 (ENSSLUG00000005225)	MAP3K6 (ENSSLUG00000003332) #21	MAP7D1 (ENSSLUG00000002922) #22	THRAP3 (ENSSLUG00000002906) #23	sh3d21 (ENSSLUG00000002896) #24	eva1ba (ENSSLUG00000002889) #25	STK40 (ENSSLUG00000002877) #26	OSCP1 (ENSSLUG00000002865) #27	ENSSLUG00000002857 #28	mrps15 (ENSSLUG00000023350) #29	csf3r (ENSSLUG00000023341) #30	GRIK3 (ENSSLUG00000023219) #31	ENSSLUG00000023196	ZC3H12A (ENSSLUG00000023191) #32	ENSSLUG00000023188	INPP5B (ENSSLUG00000021701) #34	mtf1 (ENSSLUG00000021588) #35	yrdc (ENSSLUG00000021583) #36
Cottioidei	ANCESTRAL SPECIES	7	ENSGT00940000154450.uc	ENSGT00530000063881.a.b #8	ENSGT01060000248564.a.b #9	ENSGT00940000158787 #10	ENSGT00940000159442 #11	ENSGT01090000260070.C.a #12	ENSGT00390000017974.nb #13	ENSGT00950000183031.A.a.a	ENSGT00940000165372 #14	ENSGT00390000005813 #15	ENSGT00950000183028.a.b.a #16	ENSGT00940000158871 #17	ENSGT00810000125524 #18	ENSGT00390000003012 #19	ENSGT00940000159398 #21	ENSGT00950000182941.a.a.b.e.a.b #22	ENSGT00950000183163.a.a.ab #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.b #25	ENSGT00950000182986.b #26	ENSGT00390000004808.e #27	ENSGT00940000166129 #28	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00530000068429	ENSGT00940000159465 #31	ENSGT00940000155107.a.a.a #32	ENSGT00990000204035 #33	ENSGT00940000156762 #34	ENSGT00940000157291 #35	ENSGT00390000015364.b #36
Stickleback	DUPLICATION
Stickleback	MODERN SPECIES	19	pnrc2 (ENSGACG00000013653) #8	cnr2 (ENSGACG00000013656) #9	akirin1 (ENSGACG00000013657) #10	rhbdl2 (ENSGACG00000013668) #11	GJA9 (ENSGACG00000013675) #12	ENSGACG00000013676 #13	rragca (ENSGACG00000013678)	pou3f1 (ENSGACG00000013679) #14	utp11 (ENSGACG00000013680) #15	FHL3 (ENSGACG00000013685) #16	rspo1 (ENSGACG00000013691) #17	gnl2 (ENSGACG00000013692) #18	dnali1 (ENSGACG00000013717) #19	snip1 (ENSGACG00000013718)	MAP3K6 (ENSGACG00000013722) #21	ENSGACG00000013737 #22	ENSGACG00000013740 #22	THRAP3 (ENSGACG00000013745) #23	sh3d21 (ENSGACG00000013749) #24	eva1ba (ENSGACG00000013751) #25	STK40 (ENSGACG00000013752) #26	OSCP1 (ENSGACG00000013774) #27	mrps15 (ENSGACG00000013792) #29	csf3r (ENSGACG00000013795) #30	ENSGACG00000013798	GRIK3 (ENSGACG00000013802) #31	ZC3H12A (ENSGACG00000013859) #32	ENSGACG00000013863 #33	INPP5B (ENSGACG00000013866) #34	mtf1 (ENSGACG00000013875) #35	yrdc (ENSGACG00000013878) #36
Stickleback	MODERN SPECIES	19	cnr2 (ENSGACG00000013656) #9	akirin1 (ENSGACG00000013657) #10	rhbdl2 (ENSGACG00000013668) #11	GJA9 (ENSGACG00000013675) #12	ENSGACG00000013676 #13	rragca (ENSGACG00000013678)	pou3f1 (ENSGACG00000013679) #14	utp11 (ENSGACG00000013680) #15	FHL3 (ENSGACG00000013685) #16	rspo1 (ENSGACG00000013691) #17	gnl2 (ENSGACG00000013692) #18	dnali1 (ENSGACG00000013717) #19	snip1 (ENSGACG00000013718)	MAP3K6 (ENSGACG00000013722) #21	ENSGACG00000013737 #22	ENSGACG00000013740 #22	THRAP3 (ENSGACG00000013745) #23	sh3d21 (ENSGACG00000013749) #24	eva1ba (ENSGACG00000013751) #25	STK40 (ENSGACG00000013752) #26	OSCP1 (ENSGACG00000013774) #27	mrps15 (ENSGACG00000013792) #29	csf3r (ENSGACG00000013795) #30	ENSGACG00000013798	GRIK3 (ENSGACG00000013802) #31	ZC3H12A (ENSGACG00000013859) #32	ENSGACG00000013863 #33	INPP5B (ENSGACG00000013866) #34	mtf1 (ENSGACG00000013875) #35	yrdc (ENSGACG00000013878) #36	ENSGACG00000013885
Lumpfish	MODERN SPECIES	7	pnrc2 (ENSCLMG00005009430) #8	cnr2 (ENSCLMG00005009429) #9	akirin1 (ENSCLMG00005009427) #10	rhbdl2 (ENSCLMG00005009374) #11	GJA9 (ENSCLMG00005009373) #12	ENSCLMG00005009372 #13	rragca (ENSCLMG00005009371)	pou3f1 (ENSCLMG00005009370) #14	utp11 (ENSCLMG00005009369) #15	FHL3 (ENSCLMG00005009368) #16	rspo1 (ENSCLMG00005009363) #17	gnl2 (ENSCLMG00005009359) #18	dnali1 (ENSCLMG00005009357) #19	snip1 (ENSCLMG00005009356)	MAP3K6 (ENSCLMG00005009166) #21	MAP7D1 (ENSCLMG00005009165) #22	THRAP3 (ENSCLMG00005009163) #23	sh3d21 (ENSCLMG00005009162) #24	eva1ba (ENSCLMG00005009161) #25	STK40 (ENSCLMG00005009160) #26	OSCP1 (ENSCLMG00005009149) #27	ENSCLMG00005009147 #28	mrps15 (ENSCLMG00005009146) #29	csf3r (ENSCLMG00005009144) #30	GRIK3 (ENSCLMG00005008787) #31	ZC3H12A (ENSCLMG00005008781) #32	INPP5B (ENSCLMG00005007032) #34	mtf1 (ENSCLMG00005007022) #35	yrdc (ENSCLMG00005007021) #36	MANEAL (ENSCLMG00005007019) #37	LIN28A (ENSCLMG00005007018)
Tiger tail seahorse	MODERN SPECIES	319										FHL3 (ENSHCOG00000012021) #16	rspo1 (ENSHCOG00000012060) #17	gnl2 (ENSHCOG00000012109) #18	dnali1 (ENSHCOG00000012126) #19	SNIP1 (ENSHCOG00000012146) #20	ENSHCOG00000012157 #21	MAP7D1 (ENSHCOG00000012178) #22	sh3d21 (ENSHCOG00000012205) #24
Pinecone sodierfish	MODERN SPECIES	7	pnrc2 (ENSMMDG00005017854) #8	cnr2 (ENSMMDG00005017851) #9	akirin1 (ENSMMDG00005017848) #10	rhbdl2 (ENSMMDG00005017845) #11	GJA9 (ENSMMDG00005017842) #12	MYCBP (ENSMMDG00005017840) #13	rragca (ENSMMDG00005017838)	pou3f1 (ENSMMDG00005017837) #14	utp11 (ENSMMDG00005017835) #15	FHL3 (ENSMMDG00005017832) #16	rspo1 (ENSMMDG00005017827) #17	gnl2 (ENSMMDG00005017817) #18	dnali1 (ENSMMDG00005017815) #19	snip1 (ENSMMDG00005017814)	MAP3K6 (ENSMMDG00005015884) #21	MAP7D1 (ENSMMDG00005015855) #22	THRAP3 (ENSMMDG00005015833) #23	sh3d21 (ENSMMDG00005015819) #24	eva1ba (ENSMMDG00005015816) #25	STK40 (ENSMMDG00005015813) #26	OSCP1 (ENSMMDG00005015784) #27	ENSMMDG00005015782	mrps15 (ENSMMDG00005015781) #29	csf3r (ENSMMDG00005015763) #30	GRIK3 (ENSMMDG00005015674) #31	ENSMMDG00005015659	ZC3H12A (ENSMMDG00005015627) #32	INPP5B (ENSMMDG00005013409) #34	mtf1 (ENSMMDG00005013384) #35	yrdc (ENSMMDG00005013382) #36	MANEAL (ENSMMDG00005013381) #37
Protacanthopterygii	ANCESTRAL SPECIES	50								ENSGT00940000165372 #14	ENSGT00390000005813 #15	ENSGT00950000183028.a.b.a #16	ENSGT00940000158871 #17	ENSGT00810000125524 #18	ENSGT00390000003012 #19	ENSGT00940000156553 #20	ENSGT00940000159398 #21	ENSGT00950000182941.a.a.b.e.a.b #22	ENSGT01010000223313	ENSGT00940000156318.b.b	ENSGT00940000154063.C.a.a.b	ENSGT00950000183163.a.a.ab #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.b #25	ENSGT00950000182986.b #26	ENSGT00390000004808.e #27	ENSGT01030000235168	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a.a #32	ENSGT00990000203803	ENSGT00940000156762 #34
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	85	ENSGT00530000063881.a.b.s #8	ENSGT01060000248564.a.b.f #9	ENSGT00940000158787.g.a #10	ENSGT00940000159442.c #11	ENSGT01090000260070.C.a.d #12	ENSGT00390000017974.nb.c #13	ENSGT00950000183031.A.a.a.a.a	ENSGT00940000165372.c #14	ENSGT00390000005813.i #15	ENSGT00950000183028.a.b.a.e #16	ENSGT00940000158871.c #17	ENSGT00810000125524.c #18	ENSGT00390000003012 #19	ENSGT00940000156553.g #20	ENSGT00940000159398.d #21	ENSGT00950000182941.a.a.b.e.a.b.e #22	ENSGT00940000154063.C.a.a.b.j.a	ENSGT00950000183163.a.a.ab.c #23	ENSGT00940000160627.k #24	ENSGT00940000154096.b.b.b.b.b.b #25	ENSGT00950000182986.b.d #26	ENSGT00390000004808.e.b #27	ENSGT00390000001737.p #29	ENSGT00940000158915.ab.a #30	ENSGT00940000159465.c.a #31	ENSGT00940000155107.a.a.a.a #32	ENSGT00990000203803.c	ENSGT00940000156762.i #34	ENSGT00940000157291.j.b #35	ENSGT00390000015364.b.m #36	ENSGT00390000016054.b.i #37
Huchen	DUPLICATION
Huchen	MODERN SPECIES	193	cnr2 (ENSHHUG00000024447) #9	akirin1 (ENSHHUG00000024422) #10	rhbdl2 (ENSHHUG00000024388) #11	GJA9 (ENSHHUG00000024386) #12	ENSHHUG00000024370 #13	rragca (ENSHHUG00000024334)	pou3f1 (ENSHHUG00000024330) #14	utp11 (ENSHHUG00000024320) #15	FHL3 (ENSHHUG00000024316) #16	rspo1 (ENSHHUG00000024308) #17	ENSHHUG00000024306	gnl2 (ENSHHUG00000024270) #18	dnali1 (ENSHHUG00000024268) #19	SNIP1 (ENSHHUG00000039761) #20	MAP3K6 (ENSHHUG00000039558) #21	MAP7D1 (ENSHHUG00000039548) #22	ENSHHUG00000039543 #22	ENSHHUG00000039517	THRAP3 (ENSHHUG00000039505) #23	sh3d21 (ENSHHUG00000039486) #24	eva1ba (ENSHHUG00000039481) #25	STK40 (ENSHHUG00000039465) #26	ENSHHUG00000039453	OSCP1 (ENSHHUG00000039437) #27	ENSHHUG00000039417	csf3r (ENSHHUG00000039373) #30	GRIK3 (ENSHHUG00000039209) #31	ZC3H12A (ENSHHUG00000039189) #32	ENSHHUG00000039165	INPP5B (ENSHHUG00000039010) #34	mtf1 (ENSHHUG00000038992) #35
Huchen	MODERN SPECIES	193	akirin1 (ENSHHUG00000024422) #10	rhbdl2 (ENSHHUG00000024388) #11	GJA9 (ENSHHUG00000024386) #12	ENSHHUG00000024370 #13	rragca (ENSHHUG00000024334)	pou3f1 (ENSHHUG00000024330) #14	utp11 (ENSHHUG00000024320) #15	FHL3 (ENSHHUG00000024316) #16	rspo1 (ENSHHUG00000024308) #17	ENSHHUG00000024306	gnl2 (ENSHHUG00000024270) #18	dnali1 (ENSHHUG00000024268) #19	SNIP1 (ENSHHUG00000039761) #20	MAP3K6 (ENSHHUG00000039558) #21	MAP7D1 (ENSHHUG00000039548) #22	ENSHHUG00000039543 #22	ENSHHUG00000039517	THRAP3 (ENSHHUG00000039505) #23	sh3d21 (ENSHHUG00000039486) #24	eva1ba (ENSHHUG00000039481) #25	STK40 (ENSHHUG00000039465) #26	ENSHHUG00000039453	OSCP1 (ENSHHUG00000039437) #27	ENSHHUG00000039417	csf3r (ENSHHUG00000039373) #30	GRIK3 (ENSHHUG00000039209) #31	ZC3H12A (ENSHHUG00000039189) #32	ENSHHUG00000039165	INPP5B (ENSHHUG00000039010) #34	mtf1 (ENSHHUG00000038992) #35	yrdc (ENSHHUG00000038990) #36
Salmoninae_a	ANCESTRAL SPECIES	93	ENSGT00530000063881.a.b.s #8	ENSGT01060000248564.a.b.f #9	ENSGT00940000158787.g.a #10	ENSGT00940000159442.c.b #11	ENSGT01090000260070.C.a.d #12	ENSGT00390000017974.nb.c #13	ENSGT00950000183031.A.a.a.a.a	ENSGT00940000165372.c #14	ENSGT00390000005813.i #15	ENSGT00950000183028.a.b.a.e #16	ENSGT00940000158871.c #17	ENSGT00810000125524.c #18	ENSGT00390000003012 #19	ENSGT00940000156553.g #20	ENSGT00940000159398.d #21	ENSGT00950000182941.a.a.b.e.a.b.e #22	ENSGT00940000154063.C.a.a.b.j.a	ENSGT00950000183163.a.a.ab.c #23	ENSGT00940000160627.k #24	ENSGT00990000211290.B	ENSGT00940000154096.b.b.b.b.b.b #25	ENSGT00950000182986.b.d #26	ENSGT00390000004808.e.b #27	ENSGT01030000235168.c.a	ENSGT00390000001737.p #29	ENSGT00940000158915.ab.a #30	ENSGT00940000159465.c.a #31	ENSGT00940000155107.a.a.a.a #32	ENSGT00990000203803.c	ENSGT00940000156762.i #34	ENSGT00940000157291.j.b #35
Salmo	ANCESTRAL SPECIES	32	ENSGT00530000063881.a.b.s #8	ENSGT01060000248564.a.b.f #9	ENSGT00940000158787.g.a #10	ENSGT00940000159442.c.b #11	ENSGT01090000260070.C.a.d #12	ENSGT00390000017974.nb.c #13	ENSGT00950000183031.A.a.a.a.a	ENSGT00940000165372.c #14	ENSGT00390000005813.i #15	ENSGT00950000183028.a.b.a.e #16	ENSGT00940000158871.c #17	ENSGT00810000125524.c #18	ENSGT00390000003012 #19	ENSGT00940000156553.g #20	ENSGT00940000159398.d #21	ENSGT00950000182941.a.a.b.e.a.b.e #22	ENSGT00940000154063.C.a.a.b.j.a	ENSGT00950000183163.a.a.ab.c #23	ENSGT00940000160627.k #24	ENSGT00990000211290.B	ENSGT00940000154096.b.b.b.b.b.b #25	ENSGT00950000182986.b.d #26	ENSGT00390000004808.e.b #27	ENSGT01030000235168.d	ENSGT00390000001737.p #29	ENSGT00940000158915.ab.a #30	ENSGT00940000159465.c.a #31	ENSGT00940000155107.a.a.a.a #32	ENSGT00990000203803.c	ENSGT00940000156762.i #34	ENSGT00940000157291.j.b #35
Atlantic salmon	MODERN SPECIES	11	ENSSSAG00000074665 #7	SRSF10 (ENSSSAG00000092388)	cnr2 (ENSSSAG00000042370) #9	akirin1 (ENSSSAG00000028046) #10	rhbdl2 (ENSSSAG00000042235) #11	GJA9 (ENSSSAG00000086489) #12	MYCBP (ENSSSAG00000111295) #13	rragc (ENSSSAG00000029084)	utp11 (ENSSSAG00000029460) #15	FHL3 (ENSSSAG00000110756) #16	rspo1 (ENSSSAG00000029819) #17	gnl2 (ENSSSAG00000030089) #18	dnali1 (ENSSSAG00000030760) #19	SNIP1 (ENSSSAG00000031003) #20	ENSSSAG00000031511 #21	MAP7D1 (ENSSSAG00000040212) #22	ENSSSAG00000040460	THRAP3 (ENSSSAG00000041257) #23	sh3d21 (ENSSSAG00000039492) #24	ENSSSAG00000041298	eva1ba (ENSSSAG00000097911) #25	STK40 (ENSSSAG00000100035) #26	OSCP1 (ENSSSAG00000041394) #27	mrps15 (ENSSSAG00000041549) #29	CSF3R (ENSSSAG00000041566) #30	GRIK3 (ENSSSAG00000041700) #31	ZC3H12A (ENSSSAG00000047150) #32	ENSSSAG00000114064	INPP5B (ENSSSAG00000047240) #34	mtf1 (ENSSSAG00000051914) #35	yrdc (ENSSSAG00000051953) #36
River trout	MODERN SPECIES	30	cnr2 (ENSSTUG00000043585) #9	akirin1 (ENSSTUG00000043595) #10	rhbdl2 (ENSSTUG00000043631) #11	GJA9 (ENSSTUG00000043643) #12	ENSSTUG00000043663 #13	rragca (ENSSTUG00000043681)	pou3f1 (ENSSTUG00000043698) #14	utp11 (ENSSTUG00000043702) #15	FHL3 (ENSSTUG00000043720) #16	rspo1 (ENSSTUG00000043724) #17	ENSSTUG00000043729	gnl2 (ENSSTUG00000043753) #18	dnali1 (ENSSTUG00000043924) #19	SNIP1 (ENSSTUG00000043947) #20	MAP3K6 (ENSSTUG00000043972) #21	MAP7D1 (ENSSTUG00000044228) #22	ENSSTUG00000044325	THRAP3 (ENSSTUG00000044338) #23	sh3d21 (ENSSTUG00000044407) #24	ENSSTUG00000044433	eva1ba (ENSSTUG00000044439) #25	STK40 (ENSSTUG00000044443) #26	OSCP1 (ENSSTUG00000044465) #27	ENSSTUG00000044527	mrps15 (ENSSTUG00000044540) #29	csf3r (ENSSTUG00000044555) #30	GRIK3 (ENSSTUG00000044620) #31	ZC3H12A (ENSSTUG00000045847) #32	INPP5B (ENSSTUG00000045888) #34	mtf1 (ENSSTUG00000046336) #35	yrdc (ENSSTUG00000046359) #36
Oncorhynchus	ANCESTRAL SPECIES	3	ENSGT00530000063881.a.b.s #8	ENSGT01060000248564.a.b.f #9	ENSGT00940000158787.g.a #10	ENSGT00940000159442.d #11	ENSGT01090000260070.C.a.d #12	ENSGT00390000017974.nb.c #13	ENSGT00950000183031.A.a.a.a.a	ENSGT00940000165372.c #14	ENSGT00390000005813.i #15	ENSGT00950000183028.a.b.a.e #16	ENSGT00940000158871.c #17	ENSGT00810000125524.c #18	ENSGT00390000003012.l.a #19	ENSGT00940000156553.g #20	ENSGT00940000159398.d #21	ENSGT00950000182941.a.a.b.e.a.b.e #22	ENSGT00940000154063.C.a.a.b.j.a	ENSGT00950000183163.a.a.ab.c #23	ENSGT00940000160627.k #24	ENSGT00990000211290.B	ENSGT00940000154096.b.b.b.b.b.b #25	ENSGT00950000182986.b.d #26	ENSGT00390000004808.e.b #27	ENSGT01030000235168.c.a	ENSGT00390000001737.p #29	ENSGT00940000158915.ab.a #30	ENSGT00940000159465.c.a #31	ENSGT00940000155107.a.a.a.a #32	ENSGT00990000203803.c	ENSGT00940000156762.i #34	ENSGT00940000157291.j.b #35
Rainbow trout	MODERN SPECIES	21	pnrc2 (ENSOMYG00000009031) #8	cnr2 (ENSOMYG00000009045) #9	akirin1 (ENSOMYG00000009097) #10	ENSOMYG00000009147 #13	rragca (ENSOMYG00000009167)	ENSOMYG00000071645	pou3f1 (ENSOMYG00000009181) #14	utp11 (ENSOMYG00000009193) #15	FHL3 (ENSOMYG00000009234) #16	rspo1 (ENSOMYG00000009271) #17	ENSOMYG00000002892	gnl2 (ENSOMYG00000009355) #18	dnali1 (ENSOMYG00000009575) #19	SNIP1 (ENSOMYG00000009635) #20	ENSOMYG00000009719 #21	MAP7D1 (ENSOMYG00000009849) #22	ENSOMYG00000073482	ENSOMYG00000009890	THRAP3 (ENSOMYG00000009930) #23	sh3d21 (ENSOMYG00000009987) #24	ENSOMYG00000062962	ENSOMYG00000010013	eva1ba (ENSOMYG00000010031) #25	ENSOMYG00000069582	STK40 (ENSOMYG00000010073) #26	OSCP1 (ENSOMYG00000010242) #27	mrps15 (ENSOMYG00000010362) #29	csf3r (ENSOMYG00000010394) #30	GRIK3 (ENSOMYG00000010580) #31	ZC3H12A (ENSOMYG00000011243) #32	ENSOMYG00000011247
Oncorhynchus_a	ANCESTRAL SPECIES	8	ENSGT00530000063881.a.b.s #8	ENSGT01060000248564.a.b.f #9	ENSGT00940000158787.g.a #10	ENSGT00940000159442.c.b #11	ENSGT01090000260070.C.a.d #12	ENSGT00390000017974.nb.c #13	ENSGT00950000183031.A.a.a.a.a	ENSGT00940000165372.c #14	ENSGT00390000005813.i #15	ENSGT00950000183028.a.b.a.e #16	ENSGT00940000158871.c #17	ENSGT00810000125524.c #18	ENSGT00390000003012.l.a #19	ENSGT00940000156553.g #20	ENSGT00940000159398.d #21	ENSGT00950000182941.a.a.b.e.a.b.e #22	ENSGT00940000154063.C.a.a.b.j.a	ENSGT00950000183163.a.a.ab.c #23	ENSGT00940000160627.k #24	ENSGT00990000211290.B	ENSGT00940000154096.b.b.b.b.b.b #25	ENSGT00950000182986.b.d #26	ENSGT00390000004808.e.b #27	ENSGT01030000235168.c.a	ENSGT00390000001737.p #29	ENSGT00940000158915.ab.a #30	ENSGT00940000159465.c.a #31	ENSGT00940000155107.a.a.a.a #32	ENSGT00990000203803.c	ENSGT00940000156762.i #34	ENSGT00940000157291.j.b #35
Chinook salmon	DUPLICATION
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	22	dhdds (ENSOTSG00005005996)	ENSOTSG00005005997	fam110d (ENSOTSG00005006000)	SLC9A1 (ENSOTSG00005006007)	ENSOTSG00005006123	ENSOTSG00005006142	ENSOTSG00005007950	pou3f1 (ENSOTSG00005007951) #14	utp11 (ENSOTSG00005007952) #15	FHL3 (ENSOTSG00005007953) #16	rspo1 (ENSOTSG00005007954) #17	gnl2 (ENSOTSG00005007955) #18	dnali1 (ENSOTSG00005007956) #19	SNIP1 (ENSOTSG00005007957) #20	ENSOTSG00005007960 #21	MAP7D1 (ENSOTSG00005008519) #22	ENSOTSG00005008523	THRAP3 (ENSOTSG00005008526) #23	sh3d21 (ENSOTSG00005008530) #24	eva1ba (ENSOTSG00005008534) #25	STK40 (ENSOTSG00005008536) #26	OSCP1 (ENSOTSG00005008539) #27	ENSOTSG00005008583	mrps15 (ENSOTSG00005008585) #29	csf3r (ENSOTSG00005008586) #30	GRIK3 (ENSOTSG00005008615) #31	ZC3H12A (ENSOTSG00005011535) #32	ENSOTSG00005011536	INPP5B (ENSOTSG00005011544) #34	mtf1 (ENSOTSG00005012824) #35	yrdc (ENSOTSG00005000054) #36
Chinook salmon	MODERN SPECIES	2926								pou3f1 (ENSOTSG00005029284) #14	utp11 (ENSOTSG00005029286) #15	FHL3 (ENSOTSG00005029287) #16	rspo1 (ENSOTSG00005029290) #17	gnl2 (ENSOTSG00005029292) #18	dnali1 (ENSOTSG00005029295) #19	SNIP1 (ENSOTSG00005029299) #20	ENSOTSG00005029304 #21	MAP7D1 (ENSOTSG00005029313) #22	ENSOTSG00005029324	THRAP3 (ENSOTSG00005029326) #23	sh3d21 (ENSOTSG00005029328) #24	eva1ba (ENSOTSG00005029329) #25	STK40 (ENSOTSG00005029330) #26	OSCP1 (ENSOTSG00005029336) #27	mrps15 (ENSOTSG00005029450) #29	ENSOTSG00005029451	csf3r (ENSOTSG00005029452) #30	GRIK3 (ENSOTSG00005029467) #31	ZC3H12A (ENSOTSG00005033079) #32	ENSOTSG00005033081	INPP5B (ENSOTSG00005033083) #34	mtf1 (ENSOTSG00005033088) #35	yrdc (ENSOTSG00005033091) #36
Chinook salmon	MODERN SPECIES	22	WDR26 (ENSOTSG00005002078)	CNIH4 (ENSOTSG00005002066)	ENSOTSG00005002063	CALHM5 (ENSOTSG00005002062)	calhm6 (ENSOTSG00005002060)	klhl32 (ENSOTSG00005002042)	mms22l (ENSOTSG00005002033)	pou3f1 (ENSOTSG00005002026) #14	utp11 (ENSOTSG00005002023) #15	FHL3 (ENSOTSG00005002021) #16	rspo1 (ENSOTSG00005002019) #17	gnl2 (ENSOTSG00005002018) #18	dnali1 (ENSOTSG00005002016) #19	SNIP1 (ENSOTSG00005002012) #20	ENSOTSG00005000717 #21	MAP7D1 (ENSOTSG00005011384) #22	ENSOTSG00005011382	THRAP3 (ENSOTSG00005011377) #23	sh3d21 (ENSOTSG00005011372) #24	eva1ba (ENSOTSG00005011369) #25	STK40 (ENSOTSG00005011356) #26	OSCP1 (ENSOTSG00005011313) #27	ENSOTSG00005011310	mrps15 (ENSOTSG00005011308) #29	csf3r (ENSOTSG00005011303) #30	GRIK3 (ENSOTSG00005007874) #31	ZC3H12A (ENSOTSG00005007864) #32	ENSOTSG00005007863	INPP5B (ENSOTSG00005007623) #34	mtf1 (ENSOTSG00005007615) #35	yrdc (ENSOTSG00005007612) #36
Coho salmon	MODERN SPECIES	11	cnr2 (ENSOKIG00005017757) #9	akirin1 (ENSOKIG00005017768) #10	rhbdl2 (ENSOKIG00005017791) #11	GJA9 (ENSOKIG00005017806) #12	ENSOKIG00005017810 #13	rragca (ENSOKIG00005017823)	ENSOKIG00005017835	pou3f1 (ENSOKIG00005017836) #14	utp11 (ENSOKIG00005017841) #15	FHL3 (ENSOKIG00005017877) #16	rspo1 (ENSOKIG00005017887) #17	gnl2 (ENSOKIG00005017905) #18	dnali1 (ENSOKIG00005017939) #19	SNIP1 (ENSOKIG00005017975) #20	ENSOKIG00005018009 #21	MAP7D1 (ENSOKIG00005018595) #22	ENSOKIG00005018600	THRAP3 (ENSOKIG00005018602) #23	sh3d21 (ENSOKIG00005018614) #24	ENSOKIG00005018636	eva1ba (ENSOKIG00005018655) #25	STK40 (ENSOKIG00005018666) #26	OSCP1 (ENSOKIG00005018695) #27	mrps15 (ENSOKIG00005018782) #29	csf3r (ENSOKIG00005018820) #30	GRIK3 (ENSOKIG00005018849) #31	ZC3H12A (ENSOKIG00005018878) #32	ENSOKIG00005018888	INPP5B (ENSOKIG00005018928) #34	mtf1 (ENSOKIG00005019448) #35	yrdc (ENSOKIG00005019460) #36
Salmoninae	ANCESTRAL SPECIES	85	ENSGT00530000063881.a.b.t #8	ENSGT01060000248564.a.b.e #9	ENSGT00940000158787.g.b #10	ENSGT00940000159442.d #11	ENSGT01090000260070.C.a.c #12	ENSGT00390000017974.nb.d #13	ENSGT00950000183031.A.a.a.a.b	ENSGT00940000165372.d #14	ENSGT00390000005813.j #15	ENSGT00950000183028.a.b.a.f #16	ENSGT00940000158871.d #17	ENSGT00810000125524.d #18	ENSGT00940000179482	ENSGT00940000156553.h #20	ENSGT00940000159398.c #21	ENSGT00950000182941.a.a.b.e.a.b.f #22	ENSGT00940000154063.C.a.a.b.j.b	ENSGT00950000183163.a.a.ab.d #23	ENSGT00940000160627.l #24	ENSGT00940000154096.b.b.b.b.b.a #25	ENSGT00950000182986.b.c #26	ENSGT00390000004808.e.a #27	ENSGT01030000235168.c.b	ENSGT00390000001737.o #29	ENSGT00940000158915.ab.b #30	ENSGT00940000159465.d #31	ENSGT00940000155107.a.a.a.b #32	ENSGT00990000203803.d	ENSGT00940000156762.j #34	ENSGT00940000157291.j.a #35	ENSGT00390000015364.b.n #36
Salmoninae_a	ANCESTRAL SPECIES	39	ENSGT00530000063881.a.b.t #8	ENSGT01060000248564.a.b.e #9	ENSGT00940000158787.g.b #10	ENSGT00940000159442.d #11	ENSGT01090000260070.C.a.c #12	ENSGT00390000017974.nb.d #13	ENSGT00950000183031.A.a.a.a.b	ENSGT00940000165372.d #14	ENSGT00390000005813.j #15	ENSGT00950000183028.a.b.a.f #16	ENSGT00940000158871.d #17	ENSGT00810000125524.d #18	ENSGT00940000179482	ENSGT00940000156553.h #20	ENSGT00940000159398.c #21	ENSGT00950000182941.a.a.b.e.a.b.f #22	ENSGT00940000154063.C.a.a.b.j.b	ENSGT00950000183163.a.a.ab.d #23	ENSGT00940000160627.l #24	ENSGT00990000211290.A	ENSGT00940000154096.b.b.b.b.b.a #25	ENSGT00950000182986.b.c #26	ENSGT00390000004808.e.a #27	ENSGT01030000235168.c.b	ENSGT00390000001737.o #29	ENSGT00940000158915.ab.b #30	ENSGT00940000159465.d #31	ENSGT00940000155107.a.a.a.b #32	ENSGT00990000203803.d	ENSGT00940000156762.j #34	ENSGT00940000157291.j.a #35
Oncorhynchus	ANCESTRAL SPECIES	38	ENSGT00530000063881.a.b.t #8	ENSGT01060000248564.a.b.e #9	ENSGT00940000158787.g.b #10	ENSGT00940000159442.c.a #11	ENSGT01090000260070.C.a.c #12	ENSGT00390000017974.nb.d #13	ENSGT00950000183031.A.a.a.a.b	ENSGT00940000165372.d #14	ENSGT00390000005813.j #15	ENSGT00950000183028.a.b.a.f #16	ENSGT00940000158871.d #17	ENSGT00810000125524.d #18	ENSGT00940000179482	ENSGT00940000156553.h #20	ENSGT00940000159398.c #21	ENSGT00950000182941.a.a.b.e.a.b.f #22	ENSGT00940000154063.C.a.a.b.j.b.d	ENSGT00940000154063.C.a.a.b.j.b.c	ENSGT00950000183163.a.a.ab.d #23	ENSGT00940000160627.l #24	ENSGT00990000211290.A	ENSGT00940000154096.b.b.b.b.b.a #25	ENSGT00950000182986.b.c #26	ENSGT00390000004808.e.a #27	ENSGT01030000235168.c.b	ENSGT00390000001737.o #29	ENSGT00940000158915.ab.b #30	ENSGT00940000159465.d #31	ENSGT00940000155107.a.a.a.b #32	ENSGT00990000203803.d	ENSGT00940000156762.j #34
Oncorhynchus_a	ANCESTRAL SPECIES	127								ENSGT00940000165372.d #14	ENSGT00390000005813.j #15	ENSGT00950000183028.a.b.a.f #16	ENSGT00940000158871.d #17	ENSGT00810000125524.d #18	ENSGT00940000179482	ENSGT00940000156553.h #20	ENSGT00940000159398.c #21	ENSGT00950000182941.a.a.b.e.a.b.f #22	ENSGT00940000154063.C.a.a.b.j.b.d	ENSGT00940000154063.C.a.a.b.j.b.c	ENSGT00950000183163.a.a.ab.d #23	ENSGT00940000160627.l #24	ENSGT00990000211290.A	ENSGT00940000154096.b.b.b.b.b.a #25	ENSGT00950000182986.b.c #26	ENSGT00390000004808.e.a #27	ENSGT01030000235168.c.b	ENSGT00390000001737.o #29	ENSGT00940000158915.ab.b #30	ENSGT00940000159465.d #31	ENSGT00940000155107.a.a.a.b #32	ENSGT00990000203803.d	ENSGT00940000156762.j #34
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	2914	cnr2 (ENSOTSG00005030388) #9	akirin1 (ENSOTSG00005030319) #10	rhbdl2 (ENSOTSG00005030317) #11	GJA9 (ENSOTSG00005030316) #12	ENSOTSG00005030315 #13	rragca (ENSOTSG00005030314)	ENSOTSG00005030313	pou3f1 (ENSOTSG00005030312) #14	utp11 (ENSOTSG00005030311) #15	FHL3 (ENSOTSG00005030310) #16	rspo1 (ENSOTSG00005030309) #17	gnl2 (ENSOTSG00005030301) #18	ENSOTSG00005030258	SNIP1 (ENSOTSG00005030257) #20	ENSOTSG00005030207 #21	MAP7D1 (ENSOTSG00005030200) #22	ENSOTSG00005030197	ENSOTSG00005030117	THRAP3 (ENSOTSG00005030112) #23	sh3d21 (ENSOTSG00005030111) #24	ENSOTSG00005030110	eva1ba (ENSOTSG00005030108) #25	STK40 (ENSOTSG00005030106) #26	OSCP1 (ENSOTSG00005030103) #27	ENSOTSG00005030101	mrps15 (ENSOTSG00005030100) #29	ENSOTSG00005030098 #30	GRIK3 (ENSOTSG00005026887) #31	ZC3H12A (ENSOTSG00005026883) #32	ENSOTSG00005026882	INPP5B (ENSOTSG00005026202) #34
Chinook salmon	MODERN SPECIES	15	akirin1 (ENSOTSG00005023721) #10	rhbdl2 (ENSOTSG00005023724) #11	GJA9 (ENSOTSG00005023725) #12	ENSOTSG00005002623	rragca (ENSOTSG00005002634)	ENSOTSG00005002863	pou3f1 (ENSOTSG00005003033) #14	utp11 (ENSOTSG00005003113) #15	FHL3 (ENSOTSG00005003210) #16	ENSOTSG00005003212	rspo1 (ENSOTSG00005003214) #17	gnl2 (ENSOTSG00005003221) #18	ENSOTSG00005003337	SNIP1 (ENSOTSG00005003366) #20	ENSOTSG00005003369 #21	MAP7D1 (ENSOTSG00005003383) #22	ENSOTSG00005003397	ENSOTSG00005003401	THRAP3 (ENSOTSG00005003479) #23	sh3d21 (ENSOTSG00005003486) #24	ENSOTSG00005003493	eva1ba (ENSOTSG00005003495) #25	STK40 (ENSOTSG00005003497) #26	OSCP1 (ENSOTSG00005003499) #27	ENSOTSG00005003502	mrps15 (ENSOTSG00005003503) #29	GRIK3 (ENSOTSG00005003513) #31	ZC3H12A (ENSOTSG00005004525) #32	ENSOTSG00005004527	INPP5B (ENSOTSG00005004531) #34	mtf1 (ENSOTSG00005006701) #35
Coho salmon	MODERN SPECIES	4	akirin1 (ENSOKIG00005013285) #10	rhbdl2 (ENSOKIG00005013262) #11	GJA9 (ENSOKIG00005013255) #12	ENSOKIG00005013247 #13	rragca (ENSOKIG00005013221)	ENSOKIG00005013216	pou3f1 (ENSOKIG00005013212) #14	utp11 (ENSOKIG00005013205) #15	FHL3 (ENSOKIG00005013194) #16	rspo1 (ENSOKIG00005013187) #17	gnl2 (ENSOKIG00005012985) #18	ENSOKIG00005012932	SNIP1 (ENSOKIG00005012923) #20	MAP3K6 (ENSOKIG00005012344) #21	ENSOKIG00005012292	MAP7D1 (ENSOKIG00005012228) #22	ENSOKIG00005012207	THRAP3 (ENSOKIG00005012188) #23	sh3d21 (ENSOKIG00005012171) #24	ENSOKIG00005012134	eva1ba (ENSOKIG00005012126) #25	STK40 (ENSOKIG00005012106) #26	ENSOKIG00005012100	ENSOKIG00005012097	OSCP1 (ENSOKIG00005012056) #27	ENSOKIG00005012040	mrps15 (ENSOKIG00005012017) #29	ENSOKIG00005011934 #30	GRIK3 (ENSOKIG00005010276) #31	ZC3H12A (ENSOKIG00005010157) #32	ENSOKIG00005010146
Rainbow trout	MODERN SPECIES	11	cnr2 (ENSOMYG00000036009) #9	akirin1 (ENSOMYG00000036028) #10	rhbdl2 (ENSOMYG00000036043) #11	GJA9 (ENSOMYG00000036049) #12	MYCBP (ENSOMYG00000036056) #13	rragca (ENSOMYG00000036070)	pou3f1 (ENSOMYG00000036081) #14	utp11 (ENSOMYG00000036096) #15	FHL3 (ENSOMYG00000036105) #16	rspo1 (ENSOMYG00000036112) #17	ENSOMYG00000074317	gnl2 (ENSOMYG00000036245) #18	ENSOMYG00000037484 #20	ENSOMYG00000047915	ENSOMYG00000037595 #21	MAP7D1 (ENSOMYG00000038006) #22	ENSOMYG00000038040	ENSOMYG00000050329	ENSOMYG00000038029	ENSOMYG00000063060	THRAP3 (ENSOMYG00000038051) #23	sh3d21 (ENSOMYG00000038065) #24	eva1ba (ENSOMYG00000055958) #25	STK40 (ENSOMYG00000038106) #26	ENSOMYG00000038134	ENSOMYG00000070784	ENSOMYG00000038157	mrps15 (ENSOMYG00000038191) #29	ENSOMYG00000054305	GRIK3 (ENSOMYG00000027368) #31	ZC3H12A (ENSOMYG00000031296) #32
Salmo	ANCESTRAL SPECIES	1	ENSGT00940000154450.uc.c	ENSGT00530000063881.a.b.t #8	ENSGT01060000248564.a.b.e #9	ENSGT00940000158787.g.b #10	ENSGT00940000159442.d #11	ENSGT01090000260070.C.a.c #12	ENSGT00980000199494.a.b	ENSGT00950000183031.A.a.a.a.b	ENSGT00940000165372.d #14	ENSGT00390000005813.j #15	ENSGT00950000183028.a.b.a.f #16	ENSGT00940000158871.d #17	ENSGT00810000125524.d #18	ENSGT00940000156553.h #20	ENSGT00940000159398.c #21	ENSGT00950000182941.a.a.b.e.a.b.f #22	ENSGT00940000154063.C.a.a.b.j.b.b	ENSGT00950000183163.a.a.ab.d #23	ENSGT00940000160627.l #24	ENSGT00990000211290.A	ENSGT00940000154096.b.b.b.b.b.a #25	ENSGT00950000182986.b.c #26	ENSGT00390000004808.e.a #27	ENSGT00390000001737.o #29	ENSGT00940000158915.ab.b #30	ENSGT00940000159465.c.b.b #31	ENSGT00940000155107.a.a.a.b #32	ENSGT00990000203803.d	ENSGT00940000156762.j #34	ENSGT00940000157291.j.a #35	ENSGT00990000213494
River trout	MODERN SPECIES	22	SRSF10 (ENSSTUG00000029650)	pnrc2 (ENSSTUG00000029646) #8	cnr2 (ENSSTUG00000029643) #9	akirin1 (ENSSTUG00000029596) #10	rhbdl2 (ENSSTUG00000029559) #11	GJA9 (ENSSTUG00000029550) #12	ENSSTUG00000029536	rragca (ENSSTUG00000029518)	pou3f1 (ENSSTUG00000029513) #14	utp11 (ENSSTUG00000029502) #15	FHL3 (ENSSTUG00000029489) #16	rspo1 (ENSSTUG00000029480) #17	gnl2 (ENSSTUG00000029330) #18	SNIP1 (ENSSTUG00000029312) #20	ENSSTUG00000029010 #21	MAP7D1 (ENSSTUG00000028932) #22	ENSSTUG00000028926	fam177a1 (ENSSTUG00000028915)	fam177a1 (ENSSTUG00000028906)	ENSSTUG00000028899	ENSSTUG00000028878	THRAP3 (ENSSTUG00000028821) #23	sh3d21 (ENSSTUG00000028799) #24	eva1ba (ENSSTUG00000028783) #25	STK40 (ENSSTUG00000028762) #26	OSCP1 (ENSSTUG00000028650) #27	mrps15 (ENSSTUG00000028606) #29	ENSSTUG00000010809	GRIK3 (ENSSTUG00000008608) #31	ZC3H12A (ENSSTUG00000008510) #32	ENSSTUG00000008498
Atlantic salmon	MODERN SPECIES	24	pnrc2 (ENSSSAG00000100053) #8	cnr2 (ENSSSAG00000027960) #9	ENSSSAG00000084598	ca108 (ENSSSAG00000042312) #10	rhbdl2 (ENSSSAG00000116091) #11	GJA9 (ENSSSAG00000108800) #12	ENSSSAG00000107037	rragca (ENSSSAG00000042174)	utp11 (ENSSSAG00000042064) #15	FHL3 (ENSSSAG00000042046) #16	rspo1 (ENSSSAG00000112303) #17	gnl2 (ENSSSAG00000041915)	dnali1 (ENSSSAG00000041885) #19	ENSSSAG00000041874 #20	ENSSSAG00000041598 #21	MAP7D1 (ENSSSAG00000041522) #22	ENSSSAG00000010394	ENSSSAG00000039686	ENSSSAG00000114956	THRAP3 (ENSSSAG00000039533) #23	sh3d21 (ENSSSAG00000041288) #24	ENSSSAG00000100766	CA078 (ENSSSAG00000039398) #25	STK40 (ENSSSAG00000039079) #26	OSCP1 (ENSSSAG00000038140) #27	mrps15 (ENSSSAG00000037592) #29	csf3r (ENSSSAG00000072535) #30	GRIK3 (ENSSSAG00000070593) #31	ENSSSAG00000091521	ZC3H12A (ENSSSAG00000070519) #32	ENSSSAG00000121662
Huchen	MODERN SPECIES	516								pou3f1 (ENSHHUG00000023677) #14	utp11 (ENSHHUG00000023669) #15	FHL3 (ENSHHUG00000023662) #16	rspo1 (ENSHHUG00000023657) #17	gnl2 (ENSHHUG00000023471) #18	ENSHHUG00000023458	SNIP1 (ENSHHUG00000023456) #20	MAP3K6 (ENSHHUG00000023393) #21	MAP7D1 (ENSHHUG00000023310) #22	ENSHHUG00000023305	THRAP3 (ENSHHUG00000023283) #23	sh3d21 (ENSHHUG00000023275) #24	eva1ba (ENSHHUG00000023251) #25	STK40 (ENSHHUG00000023245) #26	OSCP1 (ENSHHUG00000023235) #27	ENSHHUG00000023196	mrps15 (ENSHHUG00000023165) #29
Northern pike	MODERN SPECIES	19	SRSF10 (ENSELUG00000017108)	pnrc2 (ENSELUG00000017122) #8	cnr2 (ENSELUG00000017144) #9	rhbdl2 (ENSELUG00000017191) #11	GJA9 (ENSELUG00000017242) #12	ENSELUG00000025351 #13	rragca (ENSELUG00000017293)	pou3f1 (ENSELUG00000017309) #14	utp11 (ENSELUG00000017361) #15	FHL3 (ENSELUG00000000657) #16	rspo1 (ENSELUG00000017421) #17	gnl2 (ENSELUG00000000675) #18	dnali1 (ENSELUG00000000681) #19	SNIP1 (ENSELUG00000017487) #20	MAP3K6 (ENSELUG00000017546) #21	map7d1a (ENSELUG00000017646) #22	ENSELUG00000000703	ENSELUG00000017676	ENSELUG00000034553	THRAP3 (ENSELUG00000017733) #23	sh3d21 (ENSELUG00000017766) #24	eva1ba (ENSELUG00000017790) #25	STK40 (ENSELUG00000017831) #26	OSCP1 (ENSELUG00000017885) #27	PL8L1 (ENSELUG00000032488)	mrps15 (ENSELUG00000017968) #29	smpdl3b (ENSELUG00000017994)	mecr (ENSELUG00000018018)	LIN28A (ENSELUG00000018033)	MANEAL (ENSELUG00000018058) #37	yrdc (ENSELUG00000018071) #36
Otomorpha	ANCESTRAL SPECIES	109															ENSGT00940000159398 #21	ENSGT00950000182941.a.a.b.e.a.b #22	ENSGT00950000183163.a.a.ab #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.b #25	ENSGT00950000182986.b #26	ENSGT00390000004808.e #27	ENSGT01030000235168	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a.a #32	ENSGT00990000203803	ENSGT00940000156762 #34	ENSGT00940000157291 #35	ENSGT00390000015364.b #36	ENSGT00390000016054.b.i #37
Otophysi	ANCESTRAL SPECIES	56	ENSGT00940000157582.g	ENSGT00950000183053.A.a.b	ENSGT00940000157218.A	ENSGT01030000234623.a.a.b.a	ENSGT00990000203824	ENSGT01030000234597.b.a.b.c.b	ENSGT00940000161438	ENSGT00940000157151.c	ENSGT00940000164800	ENSGT00940000164873	ENSGT00390000002144	ENSGT00910000144179.b.b.o.a	ENSGT00530000063624.C.b	ENSGT00940000157999	ENSGT00940000159398 #21	ENSGT00950000182941.a.a.b.e.a.b #22	ENSGT00950000183163.a.a.ab #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.b #25	ENSGT00950000182986.b #26	ENSGT00390000004808.e #27	ENSGT01030000235168	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a.a #32	ENSGT00990000203803	ENSGT00940000156762 #34	ENSGT00940000157291 #35	ENSGT00390000015364.b #36	ENSGT00390000016054.b.i #37
Characiphysae	ANCESTRAL SPECIES		ENSGT00940000157218.A	ENSGT01030000234623.a.a.b.a	ENSGT00990000203824	ENSGT01030000234597.b.a.b.c.b	ENSGT00940000161438	ENSGT00940000157151.c	ENSGT00940000178073	ENSGT00410000025596.a.b.a	ENSGT00940000164800	ENSGT00940000164873	ENSGT00390000002144	ENSGT00910000144179.b.b.o.a	ENSGT00530000063624.C.b	ENSGT00940000157999	ENSGT00940000159398 #21	ENSGT00950000182941.a.a.b.e.a.b #22	ENSGT00950000183163.a.a.ab #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.b #25	ENSGT00950000182986.b #26	ENSGT00390000004808.e #27	ENSGT01030000235168	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a.a #32	ENSGT00990000203803	ENSGT00940000156762 #34	ENSGT00940000157291 #35	ENSGT00390000015364.b #36	ENSGT00390000016054.b.i #37
Characiphysae_b	ANCESTRAL SPECIES	2	ENSGT00940000157218.A	ENSGT01030000234623.a.a.b.a	ENSGT00990000203824	ENSGT01030000234597.b.a.b.c.b	ENSGT00940000161438	ENSGT00940000157151.c	ENSGT00940000178073	ENSGT00410000025596.a.b.a	ENSGT00940000164800	ENSGT00940000164873	ENSGT00390000002144	ENSGT00910000144179.b.b.o.a	ENSGT00530000063624.C.b	ENSGT00940000157999	ENSGT00940000159398 #21	ENSGT00950000182941.a.a.b.e.a.b #22	ENSGT00950000183163.a.a.ab #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.b #25	ENSGT00950000182986.b #26	ENSGT00390000004808.e #27	ENSGT01030000235168	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a.a #32	ENSGT00990000203803	ENSGT00940000156762 #34	ENSGT00940000157291 #35	ENSGT00390000015364.b #36	ENSGT00390000016054.b.i #37
Characoidei	ANCESTRAL SPECIES	7							ENSGT00940000178073	ENSGT00410000025596.a.b.a	ENSGT00940000164800	ENSGT00940000164873	ENSGT00390000002144	ENSGT00910000144179.b.b.o.a	ENSGT00530000063624.C.b	ENSGT00940000157999	ENSGT00940000159398 #21	ENSGT00950000182941.a.a.b.e.a.b #22	ENSGT00950000183163.a.a.ab #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.b #25	ENSGT00950000182986.b #26	ENSGT00390000004808.e #27	ENSGT01030000235168	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a.a #32	ENSGT00990000203803	ENSGT00940000156762 #34	ENSGT00940000157291 #35	ENSGT00390000015364.b #36	ENSGT00390000016054.b.i #37
Red-bellied piranha	MODERN SPECIES	138										rab42b (ENSPNAG00000014821)	taf12 (ENSPNAG00000003268)	ctps1b (ENSPNAG00000014866)	cited4b (ENSPNAG00000003315)	SCMH1 (ENSPNAG00000014937)	MAP3K6 (ENSPNAG00000004700) #21	map7d1a (ENSPNAG00000003361) #22	THRAP3 (ENSPNAG00000015136) #23	sh3d21 (ENSPNAG00000015238) #24	eva1ba (ENSPNAG00000015261) #25	STK40 (ENSPNAG00000015317) #26	OSCP1 (ENSPNAG00000015372) #27	ENSPNAG00000015385	mrps15 (ENSPNAG00000015400) #29	csf3r (ENSPNAG00000015415) #30	GRIK3 (ENSPNAG00000003389) #31	ZC3H12A (ENSPNAG00000015494) #32	ENSPNAG00000015519	INPP5B (ENSPNAG00000015577) #34	mtf1 (ENSPNAG00000015605) #35	yrdc (ENSPNAG00000015625) #36	MANEAL (ENSPNAG00000015638) #37
Mexicana tetra	MODERN SPECIES	1	prpf31 (ENSAMXG00000012329)	ENSAMXG00000012311	leng1 (ENSAMXG00000012294)	RSPO2 (ENSAMXG00000037389)	eif3ea (ENSAMXG00000040417)	emc2 (ENSAMXG00000039406)	ENSAMXG00000040414	ENSAMXG00000032787	ENSAMXG00000001945	rab42b (ENSAMXG00000038342)	taf12 (ENSAMXG00000042121)	ctps1b (ENSAMXG00000001913)	ENSAMXG00000034018	scmh1 (ENSAMXG00000036301)	MAP3K6 (ENSAMXG00000001890) #21	map7d1a (ENSAMXG00000001876) #22	THRAP3 (ENSAMXG00000001863) #23	sh3d21 (ENSAMXG00000001850) #24	eva1ba (ENSAMXG00000041799) #25	STK40 (ENSAMXG00000029312) #26	OSCP1 (ENSAMXG00000042434) #27	ENSAMXG00000001798	mrps15 (ENSAMXG00000001781) #29	csf3r (ENSAMXG00000001766) #30	GRIK3 (ENSAMXG00000001749) #31	ENSAMXG00000031100	ENSAMXG00000042004	ZC3H12A (ENSAMXG00000001736) #32	ENSAMXG00000034489	ENSAMXG00000037974	INPP5B (ENSAMXG00000001691) #34
Electric eel	MODERN SPECIES	52	HIVEP3 (ENSEEEG00000006754)	SERINC2 (ENSEEEG00000006747)	ENSEEEG00000006746	ENSEEEG00000006744	paqr7b (ENSEEEG00000006743)	ptprub (ENSEEEG00000006734)	ENSEEEG00000006731	rab42b (ENSEEEG00000006729)	taf12 (ENSEEEG00000006728)	ctps1b (ENSEEEG00000006717)	cited4b (ENSEEEG00000006711)	ENSEEEG00000006710	ENSEEEG00000006709	scmh1 (ENSEEEG00000006708)	MAP3K6 (ENSEEEG00000006701) #21	map7d1a (ENSEEEG00000006695) #22	ENSEEEG00000006694 #23	sh3d21 (ENSEEEG00000006689) #24	eva1ba (ENSEEEG00000006686) #25	nsun5 (ENSEEEG00000006685)	ripk4 (ENSEEEG00000006681)	zgc:110006 (ENSEEEG00000006680)	SUPT20H (ENSEEEG00000006261)	exosc8 (ENSEEEG00000006234)	alg5 (ENSEEEG00000006226)	ENSEEEG00000006222	rfxap (ENSEEEG00000006221)	SERTM1 (ENSEEEG00000006219)	ccna1 (ENSEEEG00000006207)	sparta (ENSEEEG00000006205)	ENSEEEG00000006204
Channel catfish	MODERN SPECIES		cyp4t8 (ENSIPUG00000014649)	Ppp1r8 (ENSIPUG00000014723)	themis2 (ENSIPUG00000014758)	Rpa2 (ENSIPUG00000014790)	smpdl3b (ENSIPUG00000014863)	mecr (ENSIPUG00000014921)	LIN28A (ENSIPUG00000014952)	ENSIPUG00000014960 #37	MANEAL (ENSIPUG00000014973) #37	yrdc (ENSIPUG00000014985) #36	Mtf1 (ENSIPUG00000015020) #35	inpp5b (ENSIPUG00000015075) #34	ENSIPUG00000015128	Zc3h12a (ENSIPUG00000015158) #32	GRIK3 (ENSIPUG00000015183) #31	map7d1 (ENSIPUG00000015269) #22	THRAP3 (ENSIPUG00000015339) #23	Cd2ap (ENSIPUG00000015399) #24	Eva1b (ENSIPUG00000015458) #25	stk40 (ENSIPUG00000015473) #26	Oscp1 (ENSIPUG00000015510) #27	pl8l1 (ENSIPUG00000015558)	mrps15 (ENSIPUG00000015599) #29	csf3r (ENSIPUG00000015617) #30	ENSIPUG00000015639 #21	SCMH1 (ENSIPUG00000015680)	CITED3 (ENSIPUG00000015725)	ctps1b (ENSIPUG00000015748)	taf12 (ENSIPUG00000015799)	RAB39B (ENSIPUG00000015874)	ENSIPUG00000015908
Cyprinoidei	ANCESTRAL SPECIES	60	ENSGT00940000157218.A	ENSGT01030000234623.a.a.b.a	ENSGT00990000203824	ENSGT01030000234597.b.a.b.c.a	ENSGT01030000234597.b.a.b.c.b	ENSGT00940000161438	ENSGT00940000157151.c	ENSGT00940000164800	ENSGT00940000164873.f	ENSGT00940000164873.e	ENSGT00390000002144	ENSGT00910000144179.b.b.o.a	ENSGT00530000063624.C.b	ENSGT00940000157999	ENSGT00940000159398 #21	ENSGT00950000182941.a.a.b.e.a.b #22	ENSGT00950000183163.a.a.ab #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.b #25	ENSGT00950000182986.b #26	ENSGT00390000004808.e #27	ENSGT01030000235168	ENSGT00390000001737 #29	ENSGT00390000018500.b.b.a	ENSGT00940000155892	ENSGT00940000155619.j.a	ENSGT01030000235403	ENSGT01030000235163	ENSGT00390000016225	ENSGT00940000153801.b	ENSGT00950000183108.b.a.b
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	28	ENSGT00940000157218.A.b	ENSGT01030000234623.a.a.b.a.e	ENSGT00990000203824.b	ENSGT01030000234597.b.a.b.c.b	ENSGT00940000161438.c	ENSGT00940000157151.c.b	ENSGT00940000164800.c	ENSGT00940000164873.f	ENSGT00390000002144.gb	ENSGT00940000164873.e.a	ENSGT00390000002144.fb.a	ENSGT00910000144179.b.b.o.a.d	ENSGT00530000063624.C.b.h	ENSGT00940000157999.z	ENSGT00940000159398.e #21	ENSGT00950000182941.a.a.b.e.a.b.a #22	ENSGT00950000183163.a.a.ab.b #23	ENSGT00940000160627.i #24	ENSGT00940000154096.b.b.b.b.b.d #25	ENSGT00950000182986.b.a #26	ENSGT00390000004808.e.d #27	ENSGT01030000235168.a	ENSGT00390000001737.r #29	ENSGT00390000018500.b.b.a.b	ENSGT00940000155892.f	ENSGT00940000155619.j.a.c	ENSGT00390000016225.l	ENSGT00940000153801.b.l	ENSGT00950000183108.b.a.b.d	ENSGT00950000182991.A.a.c.a.b.f	ENSGT00390000014242.l.a
Goldfish	MODERN SPECIES	7	akirin1 (ENSCARG00000012946) #10	rhbdl2 (ENSCARG00000012940) #11	GJA9 (ENSCARG00000012937) #12	rragca (ENSCARG00000012929)	pou3f1 (ENSCARG00000012924) #14	utp11 (ENSCARG00000012919) #15	FHL3 (ENSCARG00000012912) #16	ptprub (ENSCARG00000009039)	ENSCARG00000008863	rab42b (ENSCARG00000008855)	taf12 (ENSCARG00000008850)	ctps1b (ENSCARG00000008731)	cited4b (ENSCARG00000008702)	SCMH1 (ENSCARG00000008621)	ENSCARG00000007670 #21	map7d1a (ENSCARG00000007511) #22	THRAP3 (ENSCARG00000007470) #23	sh3d21 (ENSCARG00000007452) #24	eva1ba (ENSCARG00000007440) #25	STK40 (ENSCARG00000007427) #26	OSCP1 (ENSCARG00000007397) #27	ENSCARG00000007365	mrps15 (ENSCARG00000007353) #29	sh3bp5b (ENSCARG00000007340)	capn7 (ENSCARG00000007054)	ENSCARG00000006998	PIK3R4 (ENSCARG00000006883)	decr1 (ENSCARG00000006829)	CALB1 (ENSCARG00000006811)	pnp4b (ENSCARG00000006776)	TDP2 (ENSCARG00000006763)
Cyprininae_a	ANCESTRAL SPECIES	7	ENSGT00940000157218.A.b	ENSGT01030000234623.a.a.b.a.e	ENSGT00990000203824.b	ENSGT01030000234597.b.a.b.c.b	ENSGT00940000161438.c	ENSGT00940000157151.c.b	ENSGT00940000164800.c	ENSGT00940000164873.f	ENSGT00390000002144.gb	ENSGT00940000164873.e.a	ENSGT00390000002144.fb.a	ENSGT00910000144179.b.b.o.a.d	ENSGT00530000063624.C.b.h	ENSGT00940000157999.z	ENSGT00940000159398.e #21	ENSGT00950000182941.a.a.b.e.a.b.a #22	ENSGT00950000183163.a.a.ab.b #23	ENSGT00940000160627.i #24	ENSGT00940000154096.b.b.b.b.b.d #25	ENSGT00950000182986.b.a #26	ENSGT00390000004808.e.d #27	ENSGT01030000235168.a	ENSGT00390000001737.r #29	ENSGT00390000018500.b.b.a.b	ENSGT00940000155892.f	ENSGT00940000155619.j.a.c	ENSGT00390000016225.l	ENSGT00940000153801.b.l	ENSGT00950000183108.b.a.b.d	ENSGT00950000182991.A.a.c.a.b.f	ENSGT00390000014242.l.a
Common carp reference	MODERN SPECIES	47	ENSCCRG00000012340	ENSCCRG00000061507	ENSCCRG00000046953	ENSCCRG00000076374	ENSCCRG00000057025	paqr7b (ENSCCRG00000081087)	ptprub (ENSCCRG00000031387)	ENSCCRG00000002646	si:dkey-34d22.2 (ENSCCRG00000046399)	taf12 (ENSCCRG00000058395)	rab42b (ENSCCRG00000073740)	ctps1b (ENSCCRG00000006972)	cited4b (ENSCCRG00000065553)	ENSCCRG00000006980	ENSCCRG00000006540 #21	map7d1a (ENSCCRG00000065527) #22	THRAP3 (ENSCCRG00000051496) #23	sh3d21 (ENSCCRG00000051498) #24	eva1ba (ENSCCRG00000065911) #25	STK40 (ENSCCRG00000015578) #26	OSCP1 (ENSCCRG00000073652) #27	mrps15 (ENSCCRG00000006421) #29	sh3bp5b (ENSCCRG00000006451)	capn7 (ENSCCRG00000005977)	ENSCCRG00000007312	ENSCCRG00000003522	decr1 (ENSCCRG00000078230)	ENSCCRG00000003497	pnp4b (ENSCCRG00000081736)	ENSCCRG00000033400	ENSCCRG00000002659
Golden-line barbel	MODERN SPECIES	103							paqr7b (ENSSGRG00000018604)	ptprub (ENSSGRG00000014465)	ENSSGRG00000014379	rab42b (ENSSGRG00000014377)	taf12 (ENSSGRG00000014368)	ctps1b (ENSSGRG00000013262)	cited4b (ENSSGRG00000013241)	SCMH1 (ENSSGRG00000013239)	MAP3K6 (ENSSGRG00000013042) #21	map7d1a (ENSSGRG00000013019) #22	THRAP3 (ENSSGRG00000013014) #23	ENSSGRG00000013011	sh3d21 (ENSSGRG00000013008) #24	eva1ba (ENSSGRG00000013005) #25	STK40 (ENSSGRG00000012994) #26	OSCP1 (ENSSGRG00000012853) #27	ENSSGRG00000012851	mrps15 (ENSSGRG00000012849) #29	sh3bp5b (ENSSGRG00000012848)	capn7 (ENSSGRG00000012741)	ENSSGRG00000012740	ENSSGRG00000012737	PIK3R4 (ENSSGRG00000011694)	decr1 (ENSSGRG00000011623)	ENSSGRG00000011622
Cyprininae	ANCESTRAL SPECIES	99	ENSGT00940000157582.g.b	ENSGT00950000183053.A.a.b.c	ENSGT00940000157218.A.a	ENSGT01030000234623.a.a.b.a.f	ENSGT00990000203824.a	ENSGT01030000234597.b.a.b.c.a	ENSGT00940000161438.d	ENSGT00940000157151.c.a	ENSGT00940000164800.d	ENSGT00940000164873.e.b	ENSGT00390000002144.fb.b	ENSGT00910000144179.b.b.o.a.c	ENSGT00530000063624.C.b.g	ENSGT00940000157999.`b	ENSGT00940000159398.f #21	ENSGT00950000182941.a.a.b.e.a.b.b #22	ENSGT00950000183163.a.a.ab.a #23	ENSGT00940000160627.j #24	ENSGT00940000154096.b.b.b.b.b.c #25	ENSGT00950000182986.b.b #26	ENSGT00390000004808.e.c #27	ENSGT01030000235168.b	ENSGT00390000001737.q #29	ENSGT00390000018500.b.b.a.a	ENSGT00940000155892.e	ENSGT00940000155619.j.a.d	ENSGT01030000235403	ENSGT01030000235163	ENSGT00390000016225.k	ENSGT00940000153801.b.k.b	ENSGT00940000158130.i.b
Goldfish	MODERN SPECIES	35	trmt11 (ENSCARG00000054211)	ENSCARG00000054317	hint3 (ENSCARG00000054332)	rbms3 (ENSCARG00000054410)	TGFBR2 (ENSCARG00000055298)	ENSCARG00000055375	ENSCARG00000055400	ENSCARG00000055444	rab42b (ENSCARG00000055462)	taf12 (ENSCARG00000055487)	ctps1b (ENSCARG00000055537)	ENSCARG00000055671	cited4b (ENSCARG00000049988)	SCMH1 (ENSCARG00000050008)	MAP3K6 (ENSCARG00000050052) #21	map7d1a (ENSCARG00000050150) #22	ENSCARG00000050384	THRAP3 (ENSCARG00000050399) #23	sh3d21 (ENSCARG00000050454) #24	eva1ba (ENSCARG00000050535) #25	STK40 (ENSCARG00000050551) #26	OSCP1 (ENSCARG00000050573) #27	mrps15 (ENSCARG00000050614) #29	sh3bp5b (ENSCARG00000050652)	capn7 (ENSCARG00000050670)	ENSCARG00000050729	dpy19l1l (ENSCARG00000050759)	SLC4A7 (ENSCARG00000051769)	ANKRD34A (ENSCARG00000054557)	txnipb (ENSCARG00000054570)	ENSCARG00000054580
Cyprininae_a	ANCESTRAL SPECIES	192								ENSGT00940000157151.c.a	ENSGT00940000164800.d	ENSGT00940000164873.e.b	ENSGT00390000002144.fb.b	ENSGT00910000144179.b.b.o.a.c	ENSGT00530000063624.C.b.g	ENSGT00940000157999.`b	ENSGT00940000159398.f #21	ENSGT00950000182941.a.a.b.e.a.b.b #22	ENSGT00950000183163.a.a.ab.a #23	ENSGT00940000160627.j #24	ENSGT00940000154096.b.b.b.b.b.c #25	ENSGT00950000182986.b.b #26	ENSGT00390000004808.e.c #27	ENSGT01030000235168.b	ENSGT00390000001737.q #29	ENSGT00390000018500.b.b.a.a	ENSGT00940000155892.e	ENSGT00940000155619.j.a.d	ENSGT01030000235403	ENSGT01030000235163	ENSGT00390000016225.k	ENSGT00940000153801.b.k.a	ENSGT00950000183108.b.a.b.c
Common carp reference	MODERN SPECIES	2	phactr4b (ENSCCRG00000012094)	ENSCCRG00000005202	ENSCCRG00000012346	ENSCCRG00000012366	ENSCCRG00000065016	stmn1b (ENSCCRG00000010471)	paqr7b (ENSCCRG00000067636)	ptprub (ENSCCRG00000011143)	ENSCCRG00000031270	rab42b (ENSCCRG00000006957)	ctps1b (ENSCCRG00000053678)	ENSCCRG00000054658	cited4b (ENSCCRG00000077681)	ENSCCRG00000080902	ENSCCRG00000007359 #21	map7d1a (ENSCCRG00000006475) #22	THRAP3 (ENSCCRG00000008262) #23	sh3d21 (ENSCCRG00000008250) #24	eva1ba (ENSCCRG00000080956) #25	STK40 (ENSCCRG00000053931) #26	OSCP1 (ENSCCRG00000015603) #27	mrps15 (ENSCCRG00000015732) #29	sh3bp5b (ENSCCRG00000015738)	capn7 (ENSCCRG00000015763)	ENSCCRG00000002746	ENSCCRG00000037667	decr1 (ENSCCRG00000057184)	ENSCCRG00000037627	pnp4b (ENSCCRG00000055203)	ENSCCRG00000002479	ENSCCRG00000053628
Golden-line barbel	MODERN SPECIES	554														SCMH1 (ENSSGRG00000033634)	MAP3K6 (ENSSGRG00000033642) #21	map7d1a (ENSSGRG00000034182) #22	THRAP3 (ENSSGRG00000034193) #23	sh3d21 (ENSSGRG00000034198) #24	eva1ba (ENSSGRG00000034201) #25	STK40 (ENSSGRG00000034202) #26	OSCP1 (ENSSGRG00000034217) #27	OSCP1 (ENSSGRG00000034218) #27	ENSSGRG00000034219	mrps15 (ENSSGRG00000034224) #29	sh3bp5b (ENSSGRG00000034229)	capn7 (ENSSGRG00000034342)	ENSSGRG00000034891	ENSSGRG00000034893	ENSSGRG00000034894	PIK3R4 (ENSSGRG00000034920)	decr1 (ENSSGRG00000036119)
Zebrafish	MODERN SPECIES	7	SERINC2 (ENSDARG00000053425)	ENSDARG00000095152	paqr7b (ENSDARG00000034907)	stmn1b (ENSDARG00000033655)	ptprub (ENSDARG00000101081)	ENSDARG00000103181	si:dkey-34d22.2 (ENSDARG00000100379)	ENSDARG00000101352	ENSDARG00000104865	rab42b (ENSDARG00000101170)	taf12 (ENSDARG00000104030)	ctps1b (ENSDARG00000098386)	cited4b (ENSDARG00000101009)	scmh1 (ENSDARG00000104311)	ENSDARG00000104760 #21	map7d1a (ENSDARG00000098802) #22	THRAP3 (ENSDARG00000101989) #23	sh3d21 (ENSDARG00000099448) #24	eva1ba (ENSDARG00000102701) #25	STK40 (ENSDARG00000098135) #26	OSCP1 (ENSDARG00000101888) #27	mrps15 (ENSDARG00000109289) #29	ENSDARG00000114387	sh3bp5b (ENSDARG00000103978)	capn7 (ENSDARG00000102987)	ENSDARG00000079752	PIK3R4 (ENSDARG00000060469)	decr1 (ENSDARG00000003869)	CALB1 (ENSDARG00000031598)	ENSDARG00000103001	pnp4b (ENSDARG00000029230)
Clupeiformes	ANCESTRAL SPECIES		ENSGT00530000063881.a.b #8	ENSGT01060000248564.a.b #9	ENSGT00940000158787 #10	ENSGT00940000159442 #11	ENSGT01090000260070.C.a #12	ENSGT00950000183031.A.a.a	ENSGT00940000165372 #14	ENSGT00390000005813 #15	ENSGT00950000183028.a.b.a #16	ENSGT00390000015257.c	ENSGT00390000003012 #19	ENSGT00810000125524 #18	ENSGT00940000158871 #17	ENSGT00940000156553 #20	ENSGT00940000159398 #21	ENSGT00950000182941.a.a.b.e.a.b #22	ENSGT00950000183163.a.a.ab #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.b #25	ENSGT00950000182986.b #26	ENSGT00390000004808.e #27	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a.a #32	ENSGT00990000203803	ENSGT00940000156762 #34	ENSGT00940000157291 #35	ENSGT00390000015364.b #36	ENSGT00390000016054.b.i #37	ENSGT00940000153295.a.a
Denticle herring	MODERN SPECIES	15	ENSDCDG00000014733	cyb5r4 (ENSDCDG00000014749)	sim1a (ENSDCDG00000014778)	ASCC3 (ENSDCDG00000014836)	GRIK2 (ENSDCDG00000014913)	ENSDCDG00000016058	ENSDCDG00000016059	HACE1 (ENSDCDG00000016081)	LIN28B (ENSDCDG00000016121)	bves (ENSDCDG00000016159)	popdc3 (ENSDCDG00000016167)	ENSDCDG00000016171	ENSDCDG00000016180	SNIP1 (ENSDCDG00000016195) #20	MAP3K6 (ENSDCDG00000016278) #21	map7d1a (ENSDCDG00000016562) #22	THRAP3 (ENSDCDG00000016601) #23	sh3d21 (ENSDCDG00000016619) #24	eva1ba (ENSDCDG00000016622) #25	STK40 (ENSDCDG00000016626) #26	OSCP1 (ENSDCDG00000016632) #27	mrps15 (ENSDCDG00000016644) #29	csf3r (ENSDCDG00000016649) #30	ENSDCDG00000016659	GRIK3 (ENSDCDG00000016667) #31	ZC3H12A (ENSDCDG00000016680) #32	ENSDCDG00000016681	INPP5B (ENSDCDG00000016709) #34	mtf1 (ENSDCDG00000017280) #35	yrdc (ENSDCDG00000017420) #36	MANEAL (ENSDCDG00000017425) #37
Atlantic herring	MODERN SPECIES	2	cnr2 (ENSCHAG00000016500) #9	akirin1 (ENSCHAG00000016529) #10	rhbdl2 (ENSCHAG00000016567) #11	pou3f1 (ENSCHAG00000016607) #14	utp11 (ENSCHAG00000016611) #15	FHL3 (ENSCHAG00000016623) #16	MEAF6 (ENSCHAG00000016643)	ENSCHAG00000016660	dnali1 (ENSCHAG00000016663) #19	gnl2 (ENSCHAG00000016691) #18	ENSCHAG00000016810	ENSCHAG00000016824	rspo1 (ENSCHAG00000016833) #17	snip1 (ENSCHAG00000016834)	MAP3K6 (ENSCHAG00000016845) #21	map7d1a (ENSCHAG00000017603) #22	THRAP3 (ENSCHAG00000017660) #23	sh3d21 (ENSCHAG00000017676) #24	eva1ba (ENSCHAG00000017699) #25	STK40 (ENSCHAG00000017718) #26	OSCP1 (ENSCHAG00000017793) #27	mrps15 (ENSCHAG00000017903) #29	ENSCHAG00000017916	ENSCHAG00000017931	csf3r (ENSCHAG00000017945) #30	GRIK3 (ENSCHAG00000018120) #31	ZC3H12A (ENSCHAG00000020414) #32	ENSCHAG00000000349	INPP5B (ENSCHAG00000001030) #34	mtf1 (ENSCHAG00000002640) #35	yrdc (ENSCHAG00000002890) #36
Clupeocephala	DUPLICATION
Clupeocephala	ANCESTRAL SPECIES																	ENSGT00950000182941.a.a.b.e.a.a.a ##22
Otomorpha	ANCESTRAL SPECIES																	ENSGT00950000182941.a.a.b.e.a.a.a ##22
Otophysi	DUPLICATION
Otophysi	ANCESTRAL SPECIES																	ENSGT00950000182941.a.a.b.e.a.a.a.a ##22
Cyprinoidei	ANCESTRAL SPECIES																	ENSGT00950000182941.a.a.b.e.a.a.a.a ##22
Zebrafish	DUPLICATION
Zebrafish	MODERN SPECIES	10	ENSDARG00000103106	TRAPPC9 (ENSDARG00000099118)	rragcb (ENSDARG00000099049)	fhl3b (ENSDARG00000104315) ##16	ENSDARG00000100909	ENSDARG00000105241	btr25 (ENSDARG00000102018)	ENSDARG00000102143	ENSDARG00000099509	meaf6 (ENSDARG00000101216)	stpg1 (ENSDARG00000103765)	ENSDARG00000113654	map7d1b (ENSDARG00000104701) ##22	ENSDARG00000101490 ##22	ENSDARG00000103395 ##22	ENSDARG00000102533 ##22	ENSDARG00000089402 ##22	thrap3b (ENSDARG00000098228) ##23	eva1bb (ENSDARG00000100698) ##25	LSM10 (ENSDARG00000101222)	oscp1a (ENSDARG00000104403) ##27	zc3h12ab (ENSDARG00000101034) ##32	ENSDARG00000100046	ENSDARG00000105283	ENSDARG00000102913	ENSDARG00000102992	ENSDARG00000100450	btr18 (ENSDARG00000103618)	ENSDARG00000100539	ENSDARG00000112881	smim13 (ENSDARG00000089204)
Zebrafish	MODERN SPECIES	10	TRAPPC9 (ENSDARG00000099118)	rragcb (ENSDARG00000099049)	fhl3b (ENSDARG00000104315) ##16	ENSDARG00000100909	ENSDARG00000105241	btr25 (ENSDARG00000102018)	ENSDARG00000102143	ENSDARG00000099509	meaf6 (ENSDARG00000101216)	stpg1 (ENSDARG00000103765)	ENSDARG00000113654	map7d1b (ENSDARG00000104701) ##22	ENSDARG00000101490 ##22	ENSDARG00000103395 ##22	ENSDARG00000102533 ##22	ENSDARG00000089402 ##22	thrap3b (ENSDARG00000098228) ##23	eva1bb (ENSDARG00000100698) ##25	LSM10 (ENSDARG00000101222)	oscp1a (ENSDARG00000104403) ##27	zc3h12ab (ENSDARG00000101034) ##32	ENSDARG00000100046	ENSDARG00000105283	ENSDARG00000102913	ENSDARG00000102992	ENSDARG00000100450	btr18 (ENSDARG00000103618)	ENSDARG00000100539	ENSDARG00000112881	smim13 (ENSDARG00000089204)	nedd9 (ENSDARG00000089878)
Characiphysae	ANCESTRAL SPECIES																	ENSGT00950000182941.a.a.b.e.a.a.a.a ##22
Characiphysae_b	ANCESTRAL SPECIES																	ENSGT00950000182941.a.a.b.e.a.a.a.a ##22
Characoidei	ANCESTRAL SPECIES																	ENSGT00950000182941.a.a.b.e.a.a.a.a ##22
Mexicana tetra	MODERN SPECIES	6	ddx19a (ENSAMXG00000015325)	ENSAMXG00000034791	VWA5B1 (ENSAMXG00000032840)	CAMK2N1 (ENSAMXG00000032815)	mul1b (ENSAMXG00000036074)	fam43b (ENSAMXG00000024828)	ENSAMXG00000008981	ENSAMXG00000042708	cdaa (ENSAMXG00000034539)	pink1 (ENSAMXG00000038123)	agmat (ENSAMXG00000030343)	DNAJC16 (ENSAMXG00000018083)	iyd (ENSAMXG00000030031)	selenoi (ENSAMXG00000042381)	ppp1r14c (ENSAMXG00000037953)	ENSAMXG00000041374 ##22	ENSAMXG00000025984	ENSAMXG00000038595	cyp17a2 (ENSAMXG00000043927)	egr4 (ENSAMXG00000030340)	ENSAMXG00000034155	DCLK2 (ENSAMXG00000040052)	ENSAMXG00000036777	FHIP1A (ENSAMXG00000004939)	ENSAMXG00000004935	ENSAMXG00000043047	cptp (ENSAMXG00000004933)	ints11 (ENSAMXG00000038758)	ENSAMXG00000041584	ACAP3 (ENSAMXG00000004927)	ube2j2 (ENSAMXG00000004921)
Otophysi	ANCESTRAL SPECIES																	ENSGT00950000182941.a.a.b.e.a.a.a.b ##22
Cyprinoidei	ANCESTRAL SPECIES																	ENSGT00950000182941.a.a.b.e.a.a.a.b ##22
Zebrafish	DUPLICATION
Zebrafish	MODERN SPECIES	10	kcnk9 (ENSDARG00000104563)	ENSDARG00000103106	TRAPPC9 (ENSDARG00000099118)	rragcb (ENSDARG00000099049)	fhl3b (ENSDARG00000104315) ##16	ENSDARG00000100909	ENSDARG00000105241	btr25 (ENSDARG00000102018)	ENSDARG00000102143	ENSDARG00000099509	meaf6 (ENSDARG00000101216)	stpg1 (ENSDARG00000103765)	ENSDARG00000113654	map7d1b (ENSDARG00000104701) ##22	ENSDARG00000101490 ##22	ENSDARG00000103395 ##22	ENSDARG00000102533 ##22	ENSDARG00000089402 ##22	thrap3b (ENSDARG00000098228) ##23	eva1bb (ENSDARG00000100698) ##25	LSM10 (ENSDARG00000101222)	oscp1a (ENSDARG00000104403) ##27	zc3h12ab (ENSDARG00000101034) ##32	ENSDARG00000100046	ENSDARG00000105283	ENSDARG00000102913	ENSDARG00000102992	ENSDARG00000100450	btr18 (ENSDARG00000103618)	ENSDARG00000100539	ENSDARG00000112881
Zebrafish	MODERN SPECIES	10	ENSDARG00000079654	kcnk9 (ENSDARG00000104563)	ENSDARG00000103106	TRAPPC9 (ENSDARG00000099118)	rragcb (ENSDARG00000099049)	fhl3b (ENSDARG00000104315) ##16	ENSDARG00000100909	ENSDARG00000105241	btr25 (ENSDARG00000102018)	ENSDARG00000102143	ENSDARG00000099509	meaf6 (ENSDARG00000101216)	stpg1 (ENSDARG00000103765)	ENSDARG00000113654	map7d1b (ENSDARG00000104701) ##22	ENSDARG00000101490 ##22	ENSDARG00000103395 ##22	ENSDARG00000102533 ##22	ENSDARG00000089402 ##22	thrap3b (ENSDARG00000098228) ##23	eva1bb (ENSDARG00000100698) ##25	LSM10 (ENSDARG00000101222)	oscp1a (ENSDARG00000104403) ##27	zc3h12ab (ENSDARG00000101034) ##32	ENSDARG00000100046	ENSDARG00000105283	ENSDARG00000102913	ENSDARG00000102992	ENSDARG00000100450	btr18 (ENSDARG00000103618)	ENSDARG00000100539
Euteleosteomorpha	ANCESTRAL SPECIES																	ENSGT00950000182941.a.a.b.e.a.a.a ##22
Acanthomorphata	ANCESTRAL SPECIES																	ENSGT00950000182941.a.a.b.e.a.a.a ##22
Cod	MODERN SPECIES	18	ENSGMOG00000025618	ENSGMOG00000027948	gja10a (ENSGMOG00000002098) ##12	ENSGMOG00000029715	ENSGMOG00000030418	ENSGMOG00000036440	ENSGMOG00000001776	ENSGMOG00000031697	ENSGMOG00000029140	ENSGMOG00000028769	ENSGMOG00000030873	ENSGMOG00000019348	ENSGMOG00000027382	ENSGMOG00000029480	ENSGMOG00000019382	ENSGMOG00000029632 ##22	ENSGMOG00000033270	ahi1 (ENSGMOG00000019402)	slc18b1 (ENSGMOG00000028735)	slc18b1 (ENSGMOG00000030233)	slc18b1 (ENSGMOG00000019410)	ENSGMOG00000019415	ENSGMOG00000023735	ENSGMOG00000019433	rmnd1 (ENSGMOG00000019502)	ENSGMOG00000033787	stx11a (ENSGMOG00000034568)	fbxo30a (ENSGMOG00000025323)	ENSGMOG00000026983	ENSGMOG00000016082	ENSGMOG00000034655
Clupeocephala	ANCESTRAL SPECIES																	ENSGT00950000182941.a.a.b.e.a.a.b ##22
Euteleosteomorpha	ANCESTRAL SPECIES																	ENSGT00950000182941.a.a.b.e.a.a.b ##22
Acanthomorphata	ANCESTRAL SPECIES																	ENSGT00950000182941.a.a.b.e.a.a.b ##22
Cod	MODERN SPECIES	19	ENSGMOG00000025532	ENSGMOG00000022940	ENSGMOG00000033659	ENSGMOG00000029166	ENSGMOG00000028407	etfb (ENSGMOG00000009792)	ENSGMOG00000023830	ENSGMOG00000031015	iglon5 (ENSGMOG00000030867)	ENSGMOG00000024736	ENSGMOG00000023507	ENSGMOG00000019418	ago1 (ENSGMOG00000019413)	dhdds (ENSGMOG00000001113)	ENSGMOG00000025369	MAP7D1 (ENSGMOG00000024856) ##22	ENSGMOG00000035895 #23	ENSGMOG00000006557 #24	eva1ba (ENSGMOG00000033967) #25	hint3 (ENSGMOG00000006588)	ENSGMOG00000034923	trmt11 (ENSGMOG00000006618)	RNF146 (ENSGMOG00000035264)	tent5ba (ENSGMOG00000019728)	zdhhc18a (ENSGMOG00000001179)	pigv (ENSGMOG00000001161)	ARID1A (ENSGMOG00000001024)	gpn2 (ENSGMOG00000001010)	GPATCH3 (ENSGMOG00000000991)	nr0b2a (ENSGMOG00000000984)	ENSGMOG00000024982
Osteoglossiformes	ANCESTRAL SPECIES	101	ENSGT00940000158787 #10	ENSGT00940000159442 #11	ENSGT01030000235133	ENSGT01090000260070.C.a #12	ENSGT00390000017974.nb #13	ENSGT00950000183031.A.a.a	ENSGT00940000165372 #14	ENSGT00390000005813 #15	ENSGT00950000183028.a.b.a #16	ENSGT00390000015257	ENSGT00940000158871 #17	ENSGT00810000125524 #18	ENSGT00390000003012 #19	ENSGT00940000156553 #20	ENSGT00940000159398 #21	ENSGT00950000182941.a.a.b.e.a #22	ENSGT00950000183163.a.a.ab #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.b #25	ENSGT00950000182986.b #26	ENSGT00390000004808.e #27	ENSGT01030000235168	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00530000063402.a	ENSGT00940000156762 #34	ENSGT00940000157291 #35	ENSGT00390000015364.b #36	ENSGT00390000016054.b #37
P. kingsleyae	MODERN SPECIES	185										meaf6 (ENSPKIG00000005531)	rspo1 (ENSPKIG00000005509) #17	gnl2 (ENSPKIG00000005438) #18	dnali1 (ENSPKIG00000005377) #19	SNIP1 (ENSPKIG00000005359) #20	ENSPKIG00000005338 #21	map7d1a (ENSPKIG00000005222) #22	THRAP3 (ENSPKIG00000005150) #23	sh3d21 (ENSPKIG00000005110) #24	eva1ba (ENSPKIG00000005092) #25	STK40 (ENSPKIG00000005059) #26	OSCP1 (ENSPKIG00000004997) #27	ENSPKIG00000004957	mrps15 (ENSPKIG00000004939) #29	csf3r (ENSPKIG00000004855) #30	GRIK3 (ENSPKIG00000004789) #31	zc3h12ab (ENSPKIG00000004769) #32	sf3a3 (ENSPKIG00000004719)	INPP5B (ENSPKIG00000004669) #34	mtf1 (ENSPKIG00000004616) #35	yrdc (ENSPKIG00000004574) #36	maneal (ENSPKIG00000004548) #37
Asian bonytongue	MODERN SPECIES	9	akirin1 (ENSSFOG00015020545) #10	rhbdl2 (ENSSFOG00015020519) #11	GJA9 (ENSSFOG00015020499) #12	MYCBP (ENSSFOG00015020481) #13	rragca (ENSSFOG00015020466)	pou3f1 (ENSSFOG00015029682) #14	utp11 (ENSSFOG00015020388) #15	FHL3 (ENSSFOG00015020369) #16	meaf6 (ENSSFOG00015020331)	rspo1 (ENSSFOG00015020311) #17	gnl2 (ENSSFOG00015020300) #18	dnali1 (ENSSFOG00015020284) #19	dnali1 (ENSSFOG00015020255) #19	SNIP1 (ENSSFOG00015020244) #20	ENSSFOG00015020153 #21	map7d1a (ENSSFOG00015020090) #22	ENSSFOG00015020057 #23	sh3d21 (ENSSFOG00015020035) #24	ENSSFOG00015020021	ENSSFOG00015020010	lim2.5 (ENSSFOG00015019992)	ENSSFOG00015032389	ENSSFOG00015019971	ENSSFOG00015019955	xrcc1 (ENSSFOG00015019923)	drd2l (ENSSFOG00015019901)	ENSSFOG00015019876	ethe1 (ENSSFOG00015019848)	ENSSFOG00015019826	si:dkey-211g8.1 (ENSSFOG00015019812)	ENSSFOG00015019774
Osteoglossocephalai	ANCESTRAL SPECIES	119											ENSGT01090000260070.C.b ##12	ENSGT00390000017974.ob ##13	ENSGT00950000183028.a.b.b ##16	ENSGT00390000015257	ENSGT00390000011598	ENSGT00950000182941.a.a.b.e.b ##22	ENSGT01050000246199	ENSGT00560000078630	ENSGT00950000183008.a.a.a.b	ENSGT00940000160424	ENSGT00940000158242	ENSGT00950000183053.D	ENSGT00390000008812.b.a	ENSGT00940000158053	ENSGT00940000164496.a.a	ENSGT00950000182978.B	ENSGT01090000260093.b.f	ENSGT01090000260093.b.e	ENSGT00940000156213	ENSGT00530000063698.b	ENSGT00940000157833.h.a
Clupeocephala	ANCESTRAL SPECIES	19	ENSGT00940000160140.a.a	ENSGT00950000183145.C	ENSGT00940000156934.k	ENSGT00390000007597	ENSGT00530000063023.A.b	ENSGT00940000157751	ENSGT00390000014274	ENSGT00940000156338.b	ENSGT00940000164147.b ##7	ENSGT00940000154450.tc	ENSGT01090000260070.C.b ##12	ENSGT00390000017974.ob ##13	ENSGT00950000183028.a.b.b ##16	ENSGT00390000015257	ENSGT00390000011598	ENSGT00950000182941.a.a.b.e.b ##22	ENSGT00950000183163.a.a.bb ##23	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00510000048364	ENSGT00390000004808.f ##27	ENSGT00390000010118.c.a.b	ENSGT00940000155107.a.a.b ##32	ENSGT00560000078630	ENSGT00950000183008.a.a.a.b	ENSGT00940000160424	ENSGT00940000158242	ENSGT00950000183053.D	ENSGT00390000008812.b.a	ENSGT00940000158053	ENSGT00940000164496.a.a	ENSGT00950000182978.B
Otomorpha	ANCESTRAL SPECIES	9	ENSGT00940000160140.a.a	ENSGT00950000183145.C	ENSGT00940000156934.k	ENSGT00390000007597	ENSGT00530000063023.A.b	ENSGT00940000157751	ENSGT00390000014274	ENSGT00940000156338.b	ENSGT00940000164147.b ##7	ENSGT00940000154450.tc	ENSGT01090000260070.C.b ##12	ENSGT00390000017974.ob ##13	ENSGT00950000183028.a.b.b ##16	ENSGT00390000015257	ENSGT00390000011598	ENSGT00950000182941.a.a.b.e.b ##22	ENSGT00950000183163.a.a.bb ##23	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00510000048364	ENSGT00390000004808.f ##27	ENSGT00390000010118.c.a.b	ENSGT00940000155107.a.a.b ##32	ENSGT00560000078630	ENSGT00950000183008.a.a.a.b	ENSGT00940000160424	ENSGT00940000158242	ENSGT00950000183053.D	ENSGT01030000234575.c.a.a.a.a.a.a.b.b.a.a.b	ENSGT00390000008812.b.a	ENSGT00940000158053	ENSGT00940000164496.a.a
Otophysi	ANCESTRAL SPECIES	174	ENSGT00390000002843.b	ENSGT00940000154708	ENSGT00910000144740	ENSGT00510000049347.h	ENSGT00940000154725.i	ENSGT00940000154725.j.a	ENSGT00940000157280.l	ENSGT00940000156079	ENSGT00940000162238.a.a	ENSGT00940000163557.C	ENSGT00940000159791	ENSGT00390000006486	ENSGT00950000183028.a.b.b ##16	ENSGT00390000015257	ENSGT00390000011598	ENSGT00950000182941.a.a.b.e.b ##22	ENSGT00950000183163.a.a.bb ##23	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00510000048364	ENSGT00390000004808.f ##27	ENSGT00390000010118.c.a.b	ENSGT00940000155107.a.a.b ##32	ENSGT00560000078630	ENSGT00950000183008.a.a.a.b	ENSGT00940000160424	ENSGT00940000158242	ENSGT00950000183053.D	ENSGT01030000234575.c.a.a.a.a.a.a.b.b.a.a.b	ENSGT00390000004215.a.b.b.c.b.c	ENSGT01060000248801	ENSGT00740000117011
Characiphysae	ANCESTRAL SPECIES	91	ENSGT00940000154708	ENSGT00910000144740	ENSGT00510000049347.h	ENSGT00940000154725.i	ENSGT00940000154725.j.a	ENSGT00940000157280.l	ENSGT00940000156079	ENSGT00940000162238.a.a	ENSGT00940000163557.C	ENSGT00940000159791	ENSGT00390000006486	ENSGT00950000183031.A.a.a	ENSGT00950000183028.a.b.b ##16	ENSGT00390000015257	ENSGT00390000011598	ENSGT00950000182941.a.a.b.e.b ##22	ENSGT00950000183163.a.a.bb ##23	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00510000048364	ENSGT00390000004808.f ##27	ENSGT00940000177439	ENSGT00940000155107.a.a.b ##32	ENSGT00940000162796	ENSGT01090000260400	ENSGT00950000183175.B.a	ENSGT01030000234543.A.b	ENSGT00940000160581	ENSGT00940000166166	ENSGT00940000155429.b	ENSGT00950000183054.a.a.b	ENSGT00390000006954
Characiphysae_b	ANCESTRAL SPECIES	92	ENSGT00390000002843.b	ENSGT00940000154708	ENSGT00910000144740	ENSGT00510000049347.h	ENSGT00940000154725.i	ENSGT00940000154725.j.a	ENSGT00940000157280.l	ENSGT00940000156079	ENSGT00940000162238.a.a	ENSGT00940000163557.C	ENSGT00940000159791	ENSGT00390000006486	ENSGT00950000183028.a.b.b ##16	ENSGT00390000015257	ENSGT00390000011598	ENSGT00950000182941.a.a.b.e.b ##22	ENSGT00950000183163.a.a.bb ##23	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00510000048364	ENSGT00390000004808.f ##27	ENSGT00940000177439	ENSGT00940000155107.a.a.b ##32	ENSGT00970000195294	ENSGT00940000162796	ENSGT01090000260400	ENSGT00950000183175.B.a	ENSGT01030000234543.A.b	ENSGT00940000160581	ENSGT00940000166166	ENSGT00940000155429.b	ENSGT00950000183054.a.a.b
Characoidei	ANCESTRAL SPECIES	178	ENSGT00390000002843.b	ENSGT00940000154708	ENSGT00910000144740	ENSGT00510000049347.h	ENSGT00940000154725.i	ENSGT00940000154725.j.a	ENSGT00940000157280.l	ENSGT00940000156079	ENSGT00940000162238.a.a	ENSGT00940000163557.C	ENSGT00940000159791	ENSGT00390000006486	ENSGT00950000183028.a.b.b ##16	ENSGT00390000015257	ENSGT00390000011598	ENSGT00950000182941.a.a.b.e.b ##22	ENSGT00950000183163.a.a.bb ##23	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00510000048364	ENSGT00390000004808.f ##27	ENSGT00940000177439	ENSGT00940000155107.a.a.b ##32	ENSGT00970000195294	ENSGT00940000162796	ENSGT01090000260400	ENSGT00950000183175.B.a
Mexicana tetra	MODERN SPECIES	65							FAM135B (ENSAMXG00000017175)	ENSAMXG00000036148	ENSAMXG00000019441	kcnk9 (ENSAMXG00000019517)	ENSAMXG00000038821	TRAPPC9 (ENSAMXG00000020787)	fhl3b (ENSAMXG00000032557) ##16	meaf6 (ENSAMXG00000030458)	stpg1 (ENSAMXG00000020849)	map7d1b (ENSAMXG00000020859) ##22	thrap3b (ENSAMXG00000020877) ##23	eva1bb (ENSAMXG00000041367) ##25	LSM10 (ENSAMXG00000025301)	oscp1a (ENSAMXG00000039731) ##27	ENSAMXG00000041581	ENSAMXG00000031811	zc3h12ab (ENSAMXG00000029641) ##32	ENSAMXG00000041625	ENSAMXG00000030542	sncb (ENSAMXG00000043895)
Red-bellied piranha	MODERN SPECIES	263							ENSPNAG00000004348	ENSPNAG00000028401	ENSPNAG00000028469	ENSPNAG00000028491	kcnk9 (ENSPNAG00000028505)	TRAPPC9 (ENSPNAG00000005622)	fhl3b (ENSPNAG00000004889) ##16	meaf6 (ENSPNAG00000028667)	stpg1 (ENSPNAG00000004405)	map7d1b (ENSPNAG00000004418) ##22	thrap3b (ENSPNAG00000028762) ##23	eva1bb (ENSPNAG00000004796) ##25	LSM10 (ENSPNAG00000028829)	oscp1a (ENSPNAG00000004456) ##27	ENSPNAG00000005053	ENSPNAG00000028945
Electric eel	MODERN SPECIES	898												rragcb (ENSEEEG00000021258)	fhl3b (ENSEEEG00000021257) ##16	meaf6 (ENSEEEG00000021256)	stpg1 (ENSEEEG00000021255)	map7d1b (ENSEEEG00000021254) ##22	thrap3b (ENSEEEG00000021253) ##23	eva1bb (ENSEEEG00000021251) ##25	LSM10 (ENSEEEG00000021247)	ENSEEEG00000021246
Channel catfish	MODERN SPECIES	5	ENSIPUG00000004942	ST3GAL1 (ENSIPUG00000004950)	ST3GAL1 (ENSIPUG00000004976)	khdrbs3 (ENSIPUG00000004984)	ENSIPUG00000005001	fam135b (ENSIPUG00000005028)	ENSIPUG00000005100	ENSIPUG00000005154	kcnk9 (ENSIPUG00000005285)	TRAPPC9 (ENSIPUG00000005309)	rragcb (ENSIPUG00000005440)	fhl3b (ENSIPUG00000005470) ##16	ENSIPUG00000005538	meaf6 (ENSIPUG00000005566)	stpg1 (ENSIPUG00000005620)	map7d1b (ENSIPUG00000005646) ##22	thrap3b (ENSIPUG00000005707) ##23	eva1bb (ENSIPUG00000005771) ##25	ENSIPUG00000005788	LSM10 (ENSIPUG00000005808)	oscp1a (ENSIPUG00000005816) ##27	zc3h12ab (ENSIPUG00000005852) ##32	ENSIPUG00000005858	sncb (ENSIPUG00000005865)	LRRTM2 (ENSIPUG00000005874)	CTNNA1 (ENSIPUG00000005901)	lrrtm2 (ENSIPUG00000005981)	MCHR2 (ENSIPUG00000005988)	tspan17 (ENSIPUG00000006010)	synpo (ENSIPUG00000006100)	dctn4 (ENSIPUG00000006111)
Cyprinoidei	ANCESTRAL SPECIES	35	ENSGT00730000111283.a	ENSGT00940000157595	ENSGT00940000153845.a.a	ENSGT00940000154725.j.a.a.a.a.a.a	ENSGT00940000154725.j.a.a.a.a.b	ENSGT00940000154725.j.b	ENSGT00940000157280.l	ENSGT00940000156079	ENSGT00940000162238.a.a	ENSGT00940000159308	ENSGT00940000159791	ENSGT00390000006486	ENSGT00950000183028.a.b.b ##16	ENSGT00390000015257	ENSGT00390000011598	ENSGT00950000182941.a.a.b.e.b ##22	ENSGT00950000183163.a.a.bb ##23	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00510000048364	ENSGT00390000004808.f ##27	ENSGT00390000010118.c.a.b	ENSGT00940000155107.a.a.b ##32	ENSGT00560000078630	ENSGT00950000183008.a.a.a.b	ENSGT00940000160424	ENSGT00940000158242	ENSGT00950000183053.D	ENSGT01030000234592.A.a.b.c	ENSGT01030000234575.c.a.a.a.a.a.a.b.b.a.a.b.a.a.b	ENSGT00390000004215.a.b.b.c.b.c	ENSGT01060000248801
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	143	ENSGT00390000006486.i.b	ENSGT00950000183031.A.a.a.sd.a	ENSGT00950000183028.a.b.b.g ##16	ENSGT00390000015257.b.b	ENSGT00390000011598.b	ENSGT00950000182941.a.a.b.e.b.b ##22	ENSGT00950000183163.a.a.bb.a ##23	ENSGT00940000154096.b.b.b.b.a.c ##25	ENSGT00510000048364	ENSGT00390000004808.f.a ##27	ENSGT00390000010118.c.a.b	ENSGT00940000155107.a.a.b.a ##32	ENSGT01040000240385.A.b.b.b.a.a.b.a.b.a.b.b.b.a.a.a.b	ENSGT00390000015257.a	ENSGT00390000011598.a.a	ENSGT00950000182941.a.a.b.e.b.a ##22	ENSGT00950000183163.a.a.bb.b ##23	ENSGT00940000154096.b.b.b.b.a.d ##25	ENSGT00940000181189	ENSGT00390000004808.f.b ##27	ENSGT00940000155107.a.a.b.b ##32	ENSGT00560000078630.b	ENSGT00560000078630.a.a.a	ENSGT00950000183008.a.a.a.b.d	ENSGT00940000160424.l	ENSGT00940000158242.i	ENSGT00950000183053.D.i	ENSGT01030000234592.A.a.b.c.b	ENSGT01030000234575.c.a.a.a.a.a.a.b.b.a.a.b.a.a.a.a	ENSGT01030000234575.c.a.a.a.a.a.a.b.b.a.a.b.b.c	ENSGT00390000004215.a.b.b.c.b.c.a
Goldfish	MODERN SPECIES	10	sdha (ENSCARG00000003802)	rxrba (ENSCARG00000004767)	col11a2 (ENSCARG00000005224)	ENSCARG00000005471	brd2a (ENSCARG00000005514)	tap2a (ENSCARG00000005599)	ENSCARG00000007227	zdhhc3b (ENSCARG00000007261)	ehmt2 (ENSCARG00000007556)	ENSCARG00000013613	ENSCARG00000013630	meaf6 (ENSCARG00000013724)	ENSCARG00000013777	ENSCARG00000013783	stpg1 (ENSCARG00000013790)	map7d1b (ENSCARG00000013800) ##22	thrap3b (ENSCARG00000013814) ##23	eva1bb (ENSCARG00000013820) ##25	LSM10 (ENSCARG00000013829)	zc3h12ab (ENSCARG00000013835) ##32	ENSCARG00000013843	smim13 (ENSCARG00000013854)	nedd9 (ENSCARG00000013862)	TMEM170B (ENSCARG00000013871)	HIVEP1 (ENSCARG00000013876)	edn1 (ENSCARG00000013880)	ENSCARG00000013901	ENSCARG00000013905	ENSCARG00000013915	ENSCARG00000013920	zgc:86598 (ENSCARG00000013937)
Cyprininae_a	ANCESTRAL SPECIES	43	ENSGT00940000154725.j.a.a.a.a.b	ENSGT00940000154725.j.a.a.a.a.a.b.b	ENSGT00940000154725.j.b.b	ENSGT00940000157280.l.b.a	ENSGT00940000156079.d	ENSGT00940000162238.a.a	ENSGT00940000163557.C	ENSGT00940000159791.w	ENSGT00390000006486.i.b	ENSGT00950000183031.A.a.a.sd.a	ENSGT00950000183028.a.b.b.g ##16	ENSGT00390000015257.b.b	ENSGT00390000011598.b	ENSGT00390000015257.a	ENSGT00390000011598.a.a	ENSGT00950000182941.a.a.b.e.b.a ##22	ENSGT00950000183163.a.a.bb.b ##23	ENSGT00940000154096.b.b.b.b.a.d ##25	ENSGT00940000181189	ENSGT00390000004808.f.b ##27	ENSGT00940000155107.a.a.b.b ##32	ENSGT00560000078630.a.a.a	ENSGT00950000183008.a.a.a.b.d	ENSGT00940000160424.l	ENSGT00940000158242.i	ENSGT00950000183053.D.i	ENSGT01030000234592.A.a.b.c.b	ENSGT01030000234575.c.a.a.a.a.a.a.b.b.a.a.b.b.c	ENSGT00390000004215.a.b.b.c.b.c.a	ENSGT00940000163549.d	ENSGT00940000161897.b.a.b
Golden-line barbel	MODERN SPECIES	431									ENSSGRG00000044341	kcnk9 (ENSSGRG00000044345)	TRAPPC9 (ENSSGRG00000044348)	rragcb (ENSSGRG00000044382)	fhl3b (ENSSGRG00000044387) ##16	ENSSGRG00000044389	stpg1 (ENSSGRG00000044390)	map7d1b (ENSSGRG00000044391) ##22	thrap3b (ENSSGRG00000044395) ##23	eva1bb (ENSSGRG00000044399) ##25	oscp1a (ENSSGRG00000044401) ##27	ENSSGRG00000044403	zc3h12ab (ENSSGRG00000044406) ##32	smim13 (ENSSGRG00000044408)	nedd9 (ENSSGRG00000044409)	HIVEP1 (ENSSGRG00000044413)	edn1 (ENSSGRG00000044414)	ENSSGRG00000044415	ENSSGRG00000044416
Common carp reference	MODERN SPECIES	12	ST3GAL1 (ENSCCRG00000035652)	KHDRBS3 (ENSCCRG00000071461)	FAM135B (ENSCCRG00000067822)	ENSCCRG00000066020	ENSCCRG00000064829	ENSCCRG00000034730	kcnk9 (ENSCCRG00000079282)	TRAPPC9 (ENSCCRG00000022158)	ENSCCRG00000052992	rragcb (ENSCCRG00000018138)	fhl3b (ENSCCRG00000024062) ##16	ENSCCRG00000073470	ENSCCRG00000060628	meaf6 (ENSCCRG00000031868)	stpg1 (ENSCCRG00000031856)	map7d1b (ENSCCRG00000038821) ##22	thrap3b (ENSCCRG00000038825) ##23	eva1bb (ENSCCRG00000038827) ##25	oscp1a (ENSCCRG00000022844) ##27	zc3h12ab (ENSCCRG00000081392) ##32	smim13 (ENSCCRG00000074273)	nedd9 (ENSCCRG00000022862)	TMEM170B (ENSCCRG00000005805)	HIVEP1 (ENSCCRG00000005836)	edn1 (ENSCCRG00000005841)	ENSCCRG00000058333	ENSCCRG00000070436	ENSCCRG00000044535	si:ch211-133n4.6 (ENSCCRG00000059589)	stm (ENSCCRG00000049053)	si:ch211-80h18.1 (ENSCCRG00000003110)
Cyprininae	ANCESTRAL SPECIES	143			ENSGT00940000154725.j.a.a.a.a.a.a.a.b	ENSGT00940000154725.j.a.a.a.a.b	ENSGT00940000154725.j.a.a.a.a.a.b.b	ENSGT00940000154725.j.b.b	ENSGT00940000157280.l.b.a	ENSGT00940000156079.d	ENSGT00940000163557.C	ENSGT00940000159791.w	ENSGT00390000006486.i.b	ENSGT00950000183031.A.a.a.sd.a	ENSGT00950000183028.a.b.b.g ##16	ENSGT00390000015257.b.b	ENSGT00390000011598.b	ENSGT00950000182941.a.a.b.e.b.b ##22	ENSGT00950000183163.a.a.bb.a ##23	ENSGT00940000154096.b.b.b.b.a.c ##25	ENSGT00510000048364	ENSGT00390000004808.f.a ##27	ENSGT00390000010118.c.a.b	ENSGT00940000155107.a.a.b.a ##32	ENSGT01040000240385.A.b.b.b.a.a.b.a.b.a.b.b.b.a.a.a.b	ENSGT00390000015257.a	ENSGT00390000011598.a.a	ENSGT00950000182941.a.a.b.e.b.a ##22	ENSGT00950000183163.a.a.bb.b ##23	ENSGT00940000154096.b.b.b.b.a.d ##25	ENSGT00940000181189	ENSGT00390000004808.f.b ##27	ENSGT00940000155107.a.a.b.b ##32
Cyprininae_a	ANCESTRAL SPECIES	80	ENSGT00940000159051.a.b	ENSGT00730000111283.a.c.b	ENSGT00940000157595.h	ENSGT00940000153845.a.a.c	ENSGT00940000154725.j.a.a.b	ENSGT00940000154725.j.a.a.a.a.a.b.a	ENSGT00940000154725.j.b.a.a	ENSGT00940000154725.j.a.a.a.a.a.a.b	ENSGT00940000157280.l.b.b	ENSGT00940000156079.c	ENSGT00940000159791.x	ENSGT00390000006486.i.a	ENSGT00950000183031.A.a.a.sd.b	ENSGT00950000183028.a.b.b.h ##16	ENSGT00390000015257.b.a.b	ENSGT00950000182941.a.a.b.e.b.b ##22	ENSGT00950000183163.a.a.bb.a ##23	ENSGT00940000154096.b.b.b.b.a.c ##25	ENSGT00510000048364	ENSGT00390000004808.f.a ##27	ENSGT00390000010118.c.a.b	ENSGT00940000155107.a.a.b.a ##32	ENSGT01040000240385.A.b.b.b.a.a.b.a.b.a.b.b.b.a.a.a.b	ENSGT00560000078630.a.b	ENSGT00950000183008.a.a.a.b.c	ENSGT00940000160424.k	ENSGT00940000158242.j	ENSGT00950000183053.D.j	ENSGT01030000234592.A.a.b.c.a.b.a.a	ENSGT01030000234575.c.a.a.a.a.a.a.b.b.a.a.b.a.a.b.b	ENSGT01030000234575.c.a.a.a.a.a.a.b.b.a.a.b.a.a.a.b
Common carp reference	MODERN SPECIES	31	ST3GAL1 (ENSCCRG00000077098)	ST3GAL1 (ENSCCRG00000060275)	ENSCCRG00000014824	ENSCCRG00000068801	KHDRBS3 (ENSCCRG00000039121)	FAM135B (ENSCCRG00000032935)	ENSCCRG00000075899	ENSCCRG00000070761	kcnk9 (ENSCCRG00000006675)	TRAPPC9 (ENSCCRG00000039699)	ENSCCRG00000066644	rragcb (ENSCCRG00000024063)	fhl3b (ENSCCRG00000047959) ##16	meaf6 (ENSCCRG00000031916)	stpg1 (ENSCCRG00000031912)	map7d1b (ENSCCRG00000045480) ##22	thrap3b (ENSCCRG00000039036) ##23	oscp1a (ENSCCRG00000000431) ##27	ENSCCRG00000000453	zc3h12ab (ENSCCRG00000043038) ##32	ENSCCRG00000073888	smim13 (ENSCCRG00000039594)	nedd9 (ENSCCRG00000043022)	TMEM170B (ENSCCRG00000056870)	HIVEP1 (ENSCCRG00000064435)	edn1 (ENSCCRG00000072509)	ENSCCRG00000005832	ENSCCRG00000079612	ENSCCRG00000062069	ENSCCRG00000066055	ENSCCRG00000058987
Golden-line barbel	MODERN SPECIES	693										TRAPPC9 (ENSSGRG00000005537)	ENSSGRG00000005851	rragcb (ENSSGRG00000005854)	fhl3b (ENSSGRG00000005855) ##16	meaf6 (ENSSGRG00000005860)	stpg1 (ENSSGRG00000005863)	map7d1b (ENSSGRG00000005866) ##22	thrap3b (ENSSGRG00000005870) ##23	eva1bb (ENSSGRG00000005877) ##25	LSM10 (ENSSGRG00000005878)	oscp1a (ENSSGRG00000005880) ##27	zc3h12ab (ENSSGRG00000005885) ##32	ENSSGRG00000005887	smim13 (ENSSGRG00000005888)	nedd9 (ENSSGRG00000005890)	TMEM170B (ENSSGRG00000005891)	HIVEP1 (ENSSGRG00000005892)	edn1 (ENSSGRG00000005893)	ENSSGRG00000005896	ENSSGRG00000005938	ENSSGRG00000005986	ENSSGRG00000005991
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	38	stpg1 (ENSCARG00000027732)	meaf6 (ENSCARG00000027707)	ENSCARG00000027676	ENSCARG00000027669	ENSCARG00000027653	ENSCARG00000027628	zgc:86598 (ENSCARG00000027280)	FAM135B (ENSCARG00000027192)	ENSCARG00000027155	ENSCARG00000027135	kcnk9 (ENSCARG00000027122)	TRAPPC9 (ENSCARG00000027040)	rragcb (ENSCARG00000026997)	fhl3b (ENSCARG00000026986) ##16	meaf6 (ENSCARG00000026941)	map7d1b (ENSCARG00000026890) ##22	thrap3b (ENSCARG00000026833) ##23	eva1bb (ENSCARG00000066705) ##25	LSM10 (ENSCARG00000066701)	oscp1a (ENSCARG00000066679) ##27	ENSCARG00000066670	zc3h12ab (ENSCARG00000066658) ##32	ENSCARG00000066574	smim13 (ENSCARG00000066566)	nedd9 (ENSCARG00000066558)	ENSCARG00000066545	clk2a (ENSCARG00000066066)	si:ch211-81a5.8 (ENSCARG00000066027)	ENSCARG00000066017	ndufv1 (ENSCARG00000065911)	ENSCARG00000065800
Goldfish	MODERN SPECIES	38	meaf6 (ENSCARG00000026941)	fhl3b (ENSCARG00000026986) ##16	rragcb (ENSCARG00000026997)	TRAPPC9 (ENSCARG00000027040)	kcnk9 (ENSCARG00000027122)	ENSCARG00000027135	ENSCARG00000027155	FAM135B (ENSCARG00000027192)	zgc:86598 (ENSCARG00000027280)	ENSCARG00000027628	ENSCARG00000027653	ENSCARG00000027669	ENSCARG00000027676	meaf6 (ENSCARG00000027707)	stpg1 (ENSCARG00000027732)	map7d1b (ENSCARG00000027760) ##22	ENSCARG00000027768	eva1bb (ENSCARG00000027776) ##25	LSM10 (ENSCARG00000027782)	oscp1a (ENSCARG00000027787) ##27	ENSCARG00000027799	zc3h12ab (ENSCARG00000027812) ##32	ENSCARG00000027832	smim13 (ENSCARG00000027974)	nedd9 (ENSCARG00000027982)	ENSCARG00000028022	gsk3aa (ENSCARG00000028048)	GRIK5 (ENSCARG00000028160)	ENSCARG00000029734	zgc:174904 (ENSCARG00000029741)	pdk2b (ENSCARG00000029746)
Zebrafish	MODERN SPECIES	10	ENSDARG00000079310	ENSDARG00000079654	kcnk9 (ENSDARG00000104563)	ENSDARG00000103106	TRAPPC9 (ENSDARG00000099118)	rragcb (ENSDARG00000099049)	fhl3b (ENSDARG00000104315) ##16	ENSDARG00000100909	ENSDARG00000105241	btr25 (ENSDARG00000102018)	ENSDARG00000102143	ENSDARG00000099509	meaf6 (ENSDARG00000101216)	stpg1 (ENSDARG00000103765)	ENSDARG00000113654	map7d1b (ENSDARG00000104701) ##22	ENSDARG00000101490 ##22	ENSDARG00000103395 ##22	ENSDARG00000102533 ##22	ENSDARG00000089402 ##22	thrap3b (ENSDARG00000098228) ##23	eva1bb (ENSDARG00000100698) ##25	LSM10 (ENSDARG00000101222)	oscp1a (ENSDARG00000104403) ##27	zc3h12ab (ENSDARG00000101034) ##32	ENSDARG00000100046	ENSDARG00000105283	ENSDARG00000102913	ENSDARG00000102992	ENSDARG00000100450	btr18 (ENSDARG00000103618)
Clupeiformes	ANCESTRAL SPECIES	42										ENSGT01030000235133.c	ENSGT01090000260070.C.b ##12	ENSGT00390000017974.ob ##13	ENSGT00950000183028.a.b.b ##16	ENSGT00390000015257.d	ENSGT00390000011598	ENSGT00950000182941.a.a.b.e.b ##22	ENSGT00950000183163.a.a.bb ##23	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00510000048364	ENSGT00390000004808.f ##27	ENSGT00390000010118.c.a.b	ENSGT00940000155107.a.a.b ##32	ENSGT00560000078630	ENSGT00950000183008.a.a.a.b	ENSGT00940000160424	ENSGT00940000158242	ENSGT00950000183053.D	ENSGT01030000234575.c.a.a.a.a.a.a.b.b.a.a.b.i	ENSGT00390000008812.b.a	ENSGT00940000158053	ENSGT00940000164496.a.a
Denticle herring	MODERN SPECIES	12	ehmt2 (ENSDCDG00000011830)	ENSDCDG00000011588	slc44a4 (ENSDCDG00000007527)	RNF5 (ENSDCDG00000007104)	ENSDCDG00000007061	ENSDCDG00000007050	mhc1zka (ENSDCDG00000006963)	ENSDCDG00000006887	gja9b (ENSDCDG00000006875) ##12	mycbp (ENSDCDG00000005973) ##13	ENSDCDG00000005859	ENSDCDG00000005755	fhl3b (ENSDCDG00000035449) ##16	meaf6 (ENSDCDG00000035448)	stpg1 (ENSDCDG00000035447)	map7d1b (ENSDCDG00000035444) ##22	thrap3b (ENSDCDG00000035440) ##23	eva1bb (ENSDCDG00000035438) ##25	LSM10 (ENSDCDG00000035437)	oscp1a (ENSDCDG00000035436) ##27	zc3h12ab (ENSDCDG00000035435) ##32	smim13 (ENSDCDG00000035434)	nedd9 (ENSDCDG00000035433)	TMEM170B (ENSDCDG00000035431)	HIVEP1 (ENSDCDG00000035429)	edn1 (ENSDCDG00000035426)	illr1 (ENSDCDG00000035425)	si:dkeyp-92c9.2 (ENSDCDG00000035424)	myo1g (ENSDCDG00000035308)	rxrba (ENSDCDG00000035254)	col11a2 (ENSDCDG00000035209)
Atlantic herring	MODERN SPECIES	10	PI4KB (ENSCHAG00000010721)	gabpb2a (ENSCHAG00000011246)	ENSCHAG00000011296	ctnnb2 (ENSCHAG00000011330)	ENSCHAG00000012419	ENSCHAG00000000551	ENSCHAG00000000596	ENSCHAG00000000655	ENSCHAG00000000674	gja9b (ENSCHAG00000000710) ##12	mycbp (ENSCHAG00000000761) ##13	rragca (ENSCHAG00000000775)	fhl3b (ENSCHAG00000000790) ##16	meaf6 (ENSCHAG00000000917)	stpg1 (ENSCHAG00000001040)	map7d1b (ENSCHAG00000001085) ##22	thrap3b (ENSCHAG00000001178) ##23	eva1bb (ENSCHAG00000001235) ##25	LSM10 (ENSCHAG00000001270)	oscp1a (ENSCHAG00000001289) ##27	ENSCHAG00000001342	smim13 (ENSCHAG00000001366)	nedd9 (ENSCHAG00000001391)	TMEM170B (ENSCHAG00000001423)	HIVEP1 (ENSCHAG00000001481)	edn1 (ENSCHAG00000001595)	ENSCHAG00000001663	ENSCHAG00000001909	ENSCHAG00000001932	dlgap3 (ENSCHAG00000002240)	ENSCHAG00000002422
Euteleosteomorpha	ANCESTRAL SPECIES	12	ENSGT00950000183145.C	ENSGT00940000156934.k	ENSGT00390000007597	ENSGT00530000063023.A.b	ENSGT00940000157751	ENSGT00390000014274	ENSGT00940000156338.b	ENSGT00940000164147.b ##7	ENSGT00940000160519.a.b	ENSGT00940000154450.tc	ENSGT01090000260070.C.b ##12	ENSGT00390000017974.ob ##13	ENSGT00950000183028.a.b.b ##16	ENSGT00390000015257	ENSGT00390000011598	ENSGT00950000182941.a.a.b.e.b ##22	ENSGT00950000183163.a.a.bb ##23	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00510000048364	ENSGT00390000004808.f ##27	ENSGT00390000010118.c.a.b	ENSGT00940000155107.a.a.b ##32	ENSGT00560000078630	ENSGT00950000183008.a.a.a.b	ENSGT00940000160424	ENSGT00940000158242	ENSGT00950000183053.D	ENSGT00390000008812.b.a	ENSGT00940000158053	ENSGT00940000164496.a.a	ENSGT00950000182978.B
Acanthomorphata	ANCESTRAL SPECIES	70	ENSGT00390000008551	ENSGT00940000163648.b	ENSGT00940000158729	ENSGT00390000012738	ENSGT00940000169005	ENSGT00390000010028	ENSGT00640000091536	ENSGT00950000182848.c.b.b.a	ENSGT00390000013601	ENSGT00940000157613	ENSGT00390000017955.c	ENSGT00940000156790	ENSGT00950000183028.a.b.b ##16	ENSGT00390000015257	ENSGT00390000011598	ENSGT00950000182941.a.a.b.e.b ##22	ENSGT00950000183163.a.a.bb ##23	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00510000048364	ENSGT00390000004808.f ##27	ENSGT00390000010118.c.a.b	ENSGT00940000155107.a.a.b ##32	ENSGT00560000078630	ENSGT00950000183008.a.a.a.b	ENSGT00940000160424	ENSGT00940000158242	ENSGT00950000183053.D	ENSGT00390000008812.b.a	ENSGT00940000158053	ENSGT00940000164496.a.a	ENSGT00950000182978.B
Euacanthomorphacea	ANCESTRAL SPECIES	24	ENSGT00390000008551	ENSGT00940000163648.b	ENSGT00940000158729	ENSGT00390000012738	ENSGT00940000169005	ENSGT00390000010028	ENSGT00640000091536	ENSGT00950000182848.c.b.b.a	ENSGT00390000013601	ENSGT00940000157613	ENSGT00390000017955.c	ENSGT00940000156790	ENSGT00950000183028.a.b.b ##16	ENSGT00390000015257	ENSGT00390000011598	ENSGT00950000182941.a.a.b.e.b ##22	ENSGT00950000183163.a.a.bb ##23	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00510000048364	ENSGT00390000004808.f ##27	ENSGT00390000010118.c.a.b	ENSGT00940000155107.a.a.b ##32	ENSGT00560000078630	ENSGT00950000183008.a.a.a.b	ENSGT00940000160424	ENSGT00940000158242	ENSGT00950000183053.D	ENSGT00390000008812.b.a	ENSGT00940000158053	ENSGT00940000164496.a.a	ENSGT00950000182978.B
Pinecone sodierfish	MODERN SPECIES	2	ENSMMDG00005021937	ago4 (ENSMMDG00005021010)	CLSPN (ENSMMDG00005020985)	ENSMMDG00005020984	cdca5 (ENSMMDG00005020983)	psmb2 (ENSMMDG00005020981)	tfap2e (ENSMMDG00005020979)	NCDN (ENSMMDG00005020974)	KIAA0319L (ENSMMDG00005019489)	cap1 (ENSMMDG00005019452)	ppt1 (ENSMMDG00005019225)	rragcb (ENSMMDG00005019217)	fhl3b (ENSMMDG00005019214) ##16	meaf6 (ENSMMDG00005019209)	stpg1 (ENSMMDG00005019205)	map7d1b (ENSMMDG00005019203) ##22	thrap3b (ENSMMDG00005019200) ##23	eva1bb (ENSMMDG00005019196) ##25	LSM10 (ENSMMDG00005019195)	oscp1a (ENSMMDG00005019191) ##27	ENSMMDG00005019189	ENSMMDG00005019186	ENSMMDG00005019184 ##32	zc3h12ab (ENSMMDG00005019182) ##32	smim13 (ENSMMDG00005019180)	nedd9 (ENSMMDG00005019178)	TMEM170B (ENSMMDG00005019175)	HIVEP1 (ENSMMDG00005019157)	edn1 (ENSMMDG00005019150)	ENSMMDG00005019149	myo1g (ENSMMDG00005019146)
Percomorphaceae	ANCESTRAL SPECIES	10	ENSGT00390000008551	ENSGT00940000163648.b	ENSGT00940000158729	ENSGT00390000012738	ENSGT00940000169005	ENSGT00390000010028	ENSGT00640000091536	ENSGT00950000182848.c.b.b.a	ENSGT00390000013601	ENSGT00940000157613	ENSGT00390000017955.c	ENSGT00940000156790	ENSGT00950000183028.a.b.b ##16	ENSGT00390000015257	ENSGT00390000011598	ENSGT00950000182941.a.a.b.e.b ##22	ENSGT00950000183163.a.a.bb ##23	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00510000048364	ENSGT00390000004808.f ##27	ENSGT00390000010118.c.a.b	ENSGT00940000155107.a.a.b ##32	ENSGT00560000078630	ENSGT00950000183008.a.a.a.b	ENSGT00940000160424	ENSGT00940000158242	ENSGT00950000183053.D	ENSGT00390000008812.b.a	ENSGT00940000158053	ENSGT00940000164496.a.a	ENSGT00950000182978.B
Tiger tail seahorse	MODERN SPECIES	328	c19h1orf109 (ENSHCOG00000003649)	cdca8 (ENSHCOG00000003685)	ago4 (ENSHCOG00000003725)	CLSPN (ENSHCOG00000003741)	ENSHCOG00000003758	ENSHCOG00000003772	psmb2 (ENSHCOG00000003803)	tfap2e (ENSHCOG00000003827)	NCDN (ENSHCOG00000003839)	KIAA0319L (ENSHCOG00000003961)	cap1 (ENSHCOG00000003977)	rragcb (ENSHCOG00000003986)	ppt1 (ENSHCOG00000004004)	fhl3b (ENSHCOG00000004026) ##16	meaf6 (ENSHCOG00000004069)	ENSHCOG00000004092 ##22	thrap3b (ENSHCOG00000004098) ##23	eva1bb (ENSHCOG00000004121) ##25	oscp1a (ENSHCOG00000004224) ##27	zc3h12ab (ENSHCOG00000004255) ##32	smim13 (ENSHCOG00000004269)	nedd9 (ENSHCOG00000004279)
Percomorphaceae_B	ANCESTRAL SPECIES	15	ENSGT00390000008551	ENSGT00940000163648.b	ENSGT00940000158729	ENSGT00390000012738	ENSGT00940000169005	ENSGT00390000010028	ENSGT00640000091536	ENSGT00950000182848.c.b.b.a	ENSGT00390000013601	ENSGT00940000157613	ENSGT00390000017955.c	ENSGT00940000156790	ENSGT00950000183028.a.b.b ##16	ENSGT00390000015257	ENSGT00390000011598	ENSGT00950000182941.a.a.b.e.b ##22	ENSGT00950000183163.a.a.bb ##23	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00510000048364	ENSGT00390000004808.f ##27	ENSGT00390000010118.c.a.b	ENSGT00940000155107.a.a.b ##32	ENSGT00560000078630	ENSGT00950000183008.a.a.a.b	ENSGT00940000160424	ENSGT00940000158242	ENSGT00950000183053.D	ENSGT00390000008812.b.a	ENSGT00940000158053	ENSGT00940000164496.a.a	ENSGT00950000182978.B
Ovalentaria	ANCESTRAL SPECIES	12	ENSGT00390000008551	ENSGT00940000163648.b	ENSGT00940000158729	ENSGT00390000012738	ENSGT00940000169005	ENSGT00390000010028	ENSGT00640000091536	ENSGT00950000182848.c.b.b.a	ENSGT00390000013601	ENSGT00940000157613	ENSGT00390000017955.c	ENSGT00940000156790	ENSGT00950000183028.a.b.b ##16	ENSGT00390000015257	ENSGT00390000011598	ENSGT00950000182941.a.a.b.e.b ##22	ENSGT00950000183163.a.a.bb ##23	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00510000048364	ENSGT00390000004808.f ##27	ENSGT00390000010118.c.a.b	ENSGT00940000155107.a.a.b ##32	ENSGT00560000078630	ENSGT00950000183008.a.a.a.b	ENSGT00940000160424	ENSGT00940000158242	ENSGT00950000183053.D	ENSGT00390000008812.b.a	ENSGT00940000158053	ENSGT00940000164496.a.a	ENSGT00950000182978.B
Atherinomorphae	ANCESTRAL SPECIES	52	ENSGT00390000011115	ENSGT00390000008551	ENSGT00940000163648.b	ENSGT00940000158729	ENSGT00390000012738	ENSGT00940000169005	ENSGT00390000010028	ENSGT00640000091536	ENSGT00950000182848.c.b.b.a	ENSGT00390000013601	ENSGT00940000157613	ENSGT00390000017955.c	ENSGT00940000156790	ENSGT00950000183028.a.b.b ##16	ENSGT00390000015257	ENSGT00950000182941.a.a.b.e.b ##22	ENSGT00950000183163.a.a.bb ##23	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00510000048364	ENSGT00390000004808.f ##27	ENSGT00940000177439	ENSGT00940000155107.a.a.b ##32	ENSGT00560000078630
Oryzias	ANCESTRAL SPECIES	23	ENSGT00390000011115	ENSGT00390000008551	ENSGT00940000163648.b	ENSGT00940000158729	ENSGT00390000012738	ENSGT00940000169005	ENSGT00390000010028	ENSGT00640000091536	ENSGT00950000182848.c.b.b.a	ENSGT00390000013601	ENSGT00940000157613	ENSGT00390000017955.c	ENSGT00940000156790	ENSGT00950000183028.a.b.b ##16	ENSGT00390000015257	ENSGT00950000182941.a.a.b.e.b ##22	ENSGT00950000183163.a.a.bb ##23	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00510000048364	ENSGT00390000004808.f ##27	ENSGT00940000177439.a	ENSGT00940000177439.b	ENSGT00940000155107.a.a.b ##32	ENSGT00560000078630	ENSGT00530000064067	ENSGT00940000156213.q.b	ENSGT00940000156213.q.a	ENSGT01090000260093.b.e	ENSGT01090000260093.b.f	ENSGT00950000182978.B	ENSGT00940000164496.a.a
Oryzias_a	ANCESTRAL SPECIES	18	ENSGT00390000011115	ENSGT00390000008551	ENSGT00940000163648.b	ENSGT00940000158729	ENSGT00390000012738	ENSGT00940000169005	ENSGT00390000010028	ENSGT00640000091536	ENSGT00950000182848.c.b.b.a	ENSGT00390000013601	ENSGT00940000157613	ENSGT00390000017955.c	ENSGT00940000156790	ENSGT00950000183028.a.b.b ##16	ENSGT00390000015257	ENSGT00950000182941.a.a.b.e.b ##22	ENSGT00950000183163.a.a.bb ##23	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00510000048364	ENSGT00390000004808.f ##27	ENSGT00390000010118.c.a.b	ENSGT00940000177439.b	ENSGT00940000155107.a.a.b ##32	ENSGT00560000078630	ENSGT00530000064067	ENSGT00940000156213.q.b	ENSGT00940000156213.q.a	ENSGT01090000260093.b.e	ENSGT01090000260093.b.f	ENSGT00950000182978.B	ENSGT00940000164496.a.a
Japanese Medaka HdrR	MODERN SPECIES	2	cdca8 (ENSORLG00000009938)	c19h1orf109 (ENSORLG00000009883)	ENSORLG00000009875	ago4 (ENSORLG00000009865)	CLSPN (ENSORLG00000009781)	ENSORLG00000027383	cdca5 (ENSORLG00000009754)	psmb2 (ENSORLG00000009748)	tfap2e (ENSORLG00000022744)	NCDN (ENSORLG00000009735)	KIAA0319L (ENSORLG00000009728)	cap1 (ENSORLG00000009709)	ppt1 (ENSORLG00000009676)	rragcb (ENSORLG00000009645)	meaf6 (ENSORLG00000021858)	map7d1b (ENSORLG00000009561) ##22	thrap3b (ENSORLG00000009543) ##23	eva1bb (ENSORLG00000009511) ##25	LSM10 (ENSORLG00000009504)	ENSORLG00000028326	oscp1a (ENSORLG00000009500) ##27	ENSORLG00000028537	ENSORLG00000027497	ENSORLG00000009473 ##32	smim13 (ENSORLG00000023911)	msto1 (ENSORLG00000009462)	ENSORLG00000009430	ENSORLG00000028783	xkr8.3 (ENSORLG00000009411)	ENSORLG00000009399	eya3 (ENSORLG00000009396)
Oryzias_b	ANCESTRAL SPECIES	27	ENSGT00390000008551	ENSGT00940000163648.b	ENSGT00940000158729	ENSGT00390000012738	ENSGT00940000169005	ENSGT00390000010028	ENSGT00640000091536	ENSGT00950000182848.c.b.b.a	ENSGT00390000013601	ENSGT00940000157613	ENSGT00390000017955.c	ENSGT00940000156790	ENSGT00950000183031.A.a.a	ENSGT00950000183028.a.b.b ##16	ENSGT00390000015257	ENSGT00950000182941.a.a.b.e.b ##22	ENSGT00950000183163.a.a.bb ##23	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00510000048364	ENSGT00390000004808.f ##27	ENSGT00940000177439.a	ENSGT00940000177439.b	ENSGT00940000155107.a.a.b ##32	ENSGT00560000078630	ENSGT00530000064067	ENSGT00940000156213.r	ENSGT01090000260093.b.e	ENSGT01090000260093.b.f	ENSGT00950000182978.B	ENSGT00940000164496.a.a	ENSGT00940000158053
Javanese ricefish	MODERN SPECIES	2	ENSOJAG00000014949	ENSOJAG00000015107	cdca8 (ENSOJAG00000015123)	c19h1orf109 (ENSOJAG00000015238)	ENSOJAG00000015245	EIF2C4 (ENSOJAG00000015300)	ENSOJAG00000017111	psmb2 (ENSOJAG00000017149)	tfap2e (ENSOJAG00000017207)	KIAA0319L (ENSOJAG00000017300)	cap1 (ENSOJAG00000018135)	ENSOJAG00000018375	rragcb (ENSOJAG00000018406)	fhl3b (ENSOJAG00000018420) ##16	meaf6 (ENSOJAG00000018430)	map7d1b (ENSOJAG00000018478) ##22	thrap3b (ENSOJAG00000018559) ##23	eva1bb (ENSOJAG00000018573) ##25	LSM10 (ENSOJAG00000018606)	oscp1a (ENSOJAG00000018623) ##27	ENSOJAG00000001622	ENSOJAG00000001634	zc3h12ab (ENSOJAG00000001643) ##32	smim13 (ENSOJAG00000001654)	msto1 (ENSOJAG00000001662)	srsf4 (ENSOJAG00000001676)	ENSOJAG00000001693	xkr8.3 (ENSOJAG00000001703)	ENSOJAG00000001723	eya3 (ENSOJAG00000001877)	si:ch211-195b13.1 (ENSOJAG00000002602)
Indian medaka	MODERN SPECIES	3	ENSOMEG00000006427	ago4 (ENSOMEG00000006399)	CLSPN (ENSOMEG00000006343)	ENSOMEG00000006270	cdca5 (ENSOMEG00000006255)	psmb2 (ENSOMEG00000006246)	ENSOMEG00000006212	tfap2e (ENSOMEG00000000143)	NCDN (ENSOMEG00000006095)	KIAA0319L (ENSOMEG00000006068)	cap1 (ENSOMEG00000006049)	ppt1 (ENSOMEG00000006005)	rragcb (ENSOMEG00000000957)	fhl3b (ENSOMEG00000005944) ##16	meaf6 (ENSOMEG00000005907)	map7d1b (ENSOMEG00000005865) ##22	thrap3b (ENSOMEG00000005716) ##23	eva1bb (ENSOMEG00000005691) ##25	ENSOMEG00000005680	oscp1a (ENSOMEG00000005663) ##27	ENSOMEG00000005633	ENSOMEG00000005619	ENSOMEG00000005607	zc3h12ab (ENSOMEG00000005602) ##32	smim13 (ENSOMEG00000000693)	msto1 (ENSOMEG00000005580)	srsf4 (ENSOMEG00000005541)	xkr8.3 (ENSOMEG00000005514)	ENSOMEG00000005502	eya3 (ENSOMEG00000005472)	si:ch211-195b13.1 (ENSOMEG00000022573)
Cyprinodontiformes	ANCESTRAL SPECIES	10	ENSGT00390000008551	ENSGT00940000163648.b	ENSGT00940000158729	ENSGT00390000012738	ENSGT00940000169005	ENSGT00390000010028	ENSGT00640000091536	ENSGT00950000182848.c.b.b.a	ENSGT00390000013601	ENSGT00940000157613	ENSGT00390000017955.c	ENSGT00940000156790	ENSGT00950000183028.a.b.b ##16	ENSGT00390000015257	ENSGT00390000011598	ENSGT00950000182941.a.a.b.e.b ##22	ENSGT00950000183163.a.a.bb ##23	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00510000048364	ENSGT00390000004808.f ##27	ENSGT00390000010118.c.a.b	ENSGT00940000155107.a.a.b ##32	ENSGT00560000078630	ENSGT00940000164496.a.a	ENSGT00950000182978.B	ENSGT01090000260093.b.f	ENSGT01090000260093.b.e	ENSGT00940000156213.r	ENSGT00940000156213.q.a	ENSGT00940000156213.q.b	ENSGT00530000064067
Aplocheiloidei	ANCESTRAL SPECIES	129	ENSGT00390000008551	ENSGT00940000163648.b	ENSGT00940000158729	ENSGT00390000012738	ENSGT00940000169005	ENSGT00390000010028	ENSGT00640000091536	ENSGT00950000182848.c.b.b.a	ENSGT00390000013601	ENSGT00940000157613	ENSGT00390000017955.c	ENSGT00940000156790	ENSGT00950000183028.a.b.b ##16	ENSGT00390000015257	ENSGT00390000011598	ENSGT00950000182941.a.a.b.e.b ##22	ENSGT00950000183163.a.a.bb ##23	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00510000048364	ENSGT00390000004808.f ##27
Turquoise killifish	MODERN SPECIES	411												cap1 (ENSNFUG00015020221)	ppt1 (ENSNFUG00015020397)	ENSNFUG00015020420	MEAF6 (ENSNFUG00015020423)	map7d1b (ENSNFUG00015020435) ##22	thrap3b (ENSNFUG00015020457) ##23
Cyprinodontoidei	ANCESTRAL SPECIES	60	ENSGT00940000166692	ENSGT00390000010887.b	ENSGT00940000163960.a	ENSGT00940000158729	ENSGT00390000012738	ENSGT00940000169005	ENSGT00390000010028	ENSGT00640000091536	ENSGT00950000182848.c.b.b.a	ENSGT00390000013601	ENSGT00940000157613	ENSGT00390000017955.c	ENSGT00940000156790	ENSGT00950000183028.a.b.b ##16	ENSGT00390000015257	ENSGT00950000182941.a.a.b.e.b ##22	ENSGT00950000183163.a.a.bb ##23	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00510000048364	ENSGT00390000004808.f ##27	ENSGT00390000010118.c.a.b	ENSGT00940000155107.a.a.b ##32	ENSGT00560000078630	ENSGT00940000164496.a.a	ENSGT00950000182978.B
NAME_4	ANCESTRAL SPECIES	178	ENSGT00940000166692	ENSGT00390000010887.b	ENSGT00940000163960.a	ENSGT00940000158729.n	ENSGT00390000012738	ENSGT00940000169005	ENSGT00390000010028	ENSGT00640000091536	ENSGT00950000182848.c.b.b.a	ENSGT00390000013601	ENSGT00940000157613	ENSGT00390000017955.c	ENSGT00940000156790	ENSGT00950000183028.a.b.b ##16	ENSGT00390000015257	ENSGT00950000182941.a.a.b.e.b ##22	ENSGT00950000183163.a.a.bb ##23	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00510000048364	ENSGT00390000004808.f ##27	ENSGT00390000010118.c.a.b	ENSGT00940000155107.a.a.b ##32	ENSGT00560000078630	ENSGT00940000164496.a.a	ENSGT00950000182978.B
Mummichog	MODERN SPECIES	1085															meaf6 (ENSFHEG00000001037)	map7d1b (ENSFHEG00000001044) ##22	thrap3b (ENSFHEG00000001051) ##23	ENSFHEG00000001054	LSM10 (ENSFHEG00000001058)	oscp1a (ENSFHEG00000001061) ##27	ENSFHEG00000001064
Poeciliinae	ANCESTRAL SPECIES	24	ENSGT00940000166692	ENSGT00390000010887.b	ENSGT00940000163960.a	ENSGT00940000158729	ENSGT00390000012738	ENSGT00940000169005	ENSGT00390000010028	ENSGT00640000091536	ENSGT00950000182848.c.b.b.a	ENSGT00390000013601	ENSGT00940000157613	ENSGT00390000017955.c	ENSGT00940000156790	ENSGT00950000183028.a.b.b ##16	ENSGT00390000015257	ENSGT00950000182941.a.a.b.e.b ##22	ENSGT00950000183163.a.a.bb ##23	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00510000048364	ENSGT00390000004808.f ##27	ENSGT00390000010118.c.a.b	ENSGT00950000182978.B	ENSGT00940000164496.a.a	ENSGT00560000078630	ENSGT00940000155107.a.a.b ##32	ENSGT01090000260093.b.f.o	ENSGT01090000260093.b.e	ENSGT00940000156213.r	ENSGT00940000156213.q.a	ENSGT00940000156213.q.b	ENSGT00530000064067
Platyfish	MODERN SPECIES	4	ENSXMAG00000016688	ENSXMAG00000027954	ago4 (ENSXMAG00000016657)	CLSPN (ENSXMAG00000016634)	ENSXMAG00000021351	cdca5 (ENSXMAG00000022429)	psmb2 (ENSXMAG00000016616)	tfap2e (ENSXMAG00000003446)	NCDN (ENSXMAG00000027698)	KIAA0319L (ENSXMAG00000003454)	cap1 (ENSXMAG00000028529)	ppt1 (ENSXMAG00000003488)	rragcb (ENSXMAG00000013223)	fhl3b (ENSXMAG00000003516) ##16	meaf6 (ENSXMAG00000003525)	map7d1b (ENSXMAG00000003534) ##22	thrap3b (ENSXMAG00000017962) ##23	eva1bb (ENSXMAG00000017970) ##25	LSM10 (ENSXMAG00000019963)	ENSXMAG00000004775 ##27	ENSXMAG00000028561 ##27	ENSXMAG00000028082	ENSXMAG00000017971	eya3 (ENSXMAG00000017972)	si:ch211-195b13.1 (ENSXMAG00000017993)	smim13 (ENSXMAG00000019893)	zc3h12ab (ENSXMAG00000025043) ##32	ENSXMAG00000029667	XKR8 (ENSXMAG00000021722)	xkr8.3 (ENSXMAG00000005543)	ENSXMAG00000021549
Poecilia	ANCESTRAL SPECIES	73	ENSGT00940000166692	ENSGT00390000010887.b	ENSGT00940000163960.a	ENSGT00940000158729	ENSGT00390000012738	ENSGT00940000169005	ENSGT00390000010028	ENSGT00640000091536	ENSGT00950000182848.c.b.b.a	ENSGT00390000013601	ENSGT00940000157613	ENSGT00390000017955.c	ENSGT00940000156790	ENSGT00950000183028.a.b.b ##16	ENSGT00390000015257	ENSGT00950000182941.a.a.b.e.b ##22	ENSGT00950000183163.a.a.bb ##23	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00510000048364	ENSGT00390000004808.f ##27	ENSGT00390000010118.c.a.b	ENSGT00940000170176	ENSGT00950000182978.B	ENSGT00940000164496.a.a	ENSGT00560000078630	ENSGT01090000260093.b.f.o	ENSGT01090000260093.b.e	ENSGT00940000156213.r	ENSGT00530000064067	ENSGT00530000063023.A.b	ENSGT00390000007597
NAME_6	ANCESTRAL SPECIES	199	ENSGT00940000166692	ENSGT00390000010887.b	ENSGT00940000163960.a	ENSGT00940000158729	ENSGT00390000012738	ENSGT00940000169005	ENSGT00390000010028	ENSGT00640000091536	ENSGT00950000182848.c.b.b.a	ENSGT00390000013601	ENSGT00940000157613	ENSGT00390000017955.c	ENSGT00940000156790	ENSGT00950000183028.a.b.b ##16	ENSGT00390000015257	ENSGT00950000182941.a.a.b.e.b ##22	ENSGT00950000183163.a.a.bb ##23	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00510000048364	ENSGT00390000004808.f ##27	ENSGT00390000010118.c.a.b	ENSGT00940000170176	ENSGT00950000182978.B	ENSGT00940000164496.a.a
Amazon molly	MODERN SPECIES	658	zgc:114119 (ENSPFOG00000002726)	ENSPFOG00000002334	ago4 (ENSPFOG00000001935)	CLSPN (ENSPFOG00000001788)	ENSPFOG00000024371	cdca5 (ENSPFOG00000001777)	psmb2 (ENSPFOG00000001718)	tfap2e (ENSPFOG00000001600)	NCDN (ENSPFOG00000001489)	KIAA0319L (ENSPFOG00000001224)	cap1 (ENSPFOG00000001012)	ppt1 (ENSPFOG00000000883)	rragcb (ENSPFOG00000000814)	fhl3b (ENSPFOG00000000748) ##16	meaf6 (ENSPFOG00000000680)	map7d1b (ENSPFOG00000000581) ##22	thrap3b (ENSPFOG00000000525) ##23	eva1bb (ENSPFOG00000000508) ##25	LSM10 (ENSPFOG00000020490)	oscp1a (ENSPFOG00000000446) ##27	ENSPFOG00000020489	ENSPFOG00000000423	eya3 (ENSPFOG00000000356)	si:ch211-195b13.1 (ENSPFOG00000000288)
Ovalentaria_B	ANCESTRAL SPECIES	15	ENSGT00390000008551	ENSGT00940000163648.b	ENSGT00940000158729	ENSGT00390000012738	ENSGT00940000169005	ENSGT00390000010028	ENSGT00640000091536	ENSGT00950000182848.c.b.b.a	ENSGT00390000013601	ENSGT00940000157613	ENSGT00390000017955.c	ENSGT00940000156790	ENSGT00950000183028.a.b.b ##16	ENSGT00390000015257	ENSGT00390000011598	ENSGT00950000182941.a.a.b.e.b ##22	ENSGT00950000183163.a.a.bb ##23	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00510000048364	ENSGT00390000004808.f ##27	ENSGT00390000010118.c.a.b	ENSGT00940000155107.a.a.b ##32	ENSGT00560000078630	ENSGT00950000183008.a.a.a.b	ENSGT00940000160424	ENSGT00940000158242	ENSGT00950000183053.D	ENSGT00390000008812.b.a	ENSGT00940000158053	ENSGT00940000164496.a.a	ENSGT00950000182978.B
Cichlidae	ANCESTRAL SPECIES	7	ENSGT00390000008551	ENSGT00940000163648.b	ENSGT00940000158729	ENSGT00390000012738	ENSGT00940000169005	ENSGT00390000010028	ENSGT00640000091536	ENSGT00950000182848.c.b.b.a	ENSGT00390000013601	ENSGT00940000157613	ENSGT00390000017955.c	ENSGT00940000156790	ENSGT00950000183028.a.b.b ##16	ENSGT00390000015257	ENSGT00390000011598	ENSGT00950000182941.a.a.b.e.b ##22	ENSGT00950000183163.a.a.bb ##23	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00510000048364	ENSGT00390000004808.f ##27	ENSGT00390000010118.c.a.b	ENSGT00940000155107.a.a.b ##32	ENSGT00560000078630	ENSGT00950000183008.a.a.a.b	ENSGT00940000160424	ENSGT00940000158242	ENSGT00950000183053.D	ENSGT00390000008812.b.a	ENSGT00940000158053	ENSGT00940000164496.a.a	ENSGT00950000182978.B
Pseudocrenilabrinae	ANCESTRAL SPECIES	12	ENSGT00390000008551	ENSGT00940000163648.b	ENSGT00940000158729	ENSGT00390000012738	ENSGT00940000169005	ENSGT00390000010028	ENSGT00640000091536	ENSGT00950000182848.c.b.b.a	ENSGT00390000013601	ENSGT00940000157613	ENSGT00390000017955.c	ENSGT00940000156790	ENSGT00950000183028.a.b.b ##16	ENSGT00390000015257	ENSGT00390000011598	ENSGT00950000182941.a.a.b.e.b ##22	ENSGT00950000183163.a.a.bb ##23	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00510000048364	ENSGT00390000004808.f ##27	ENSGT00390000010118.c.a.b.j	ENSGT00940000155107.a.a.b ##32	ENSGT00560000078630	ENSGT00950000183008.a.a.a.b	ENSGT00940000178420	ENSGT00940000160424	ENSGT00940000158242	ENSGT00950000183053.D	ENSGT00390000008812.b.a	ENSGT00940000158053	ENSGT00940000164496.a.a
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	9	ENSGT00390000008551	ENSGT00940000163648.b	ENSGT00940000158729	ENSGT00390000012738	ENSGT00940000169005	ENSGT00390000010028	ENSGT00640000091536	ENSGT00950000182848.c.b.b.a	ENSGT00390000013601	ENSGT00940000157613	ENSGT00390000017955.c	ENSGT00940000156790	ENSGT00950000183028.a.b.b ##16	ENSGT00390000015257	ENSGT00390000011598	ENSGT00950000182941.a.a.b.e.b ##22	ENSGT00950000183163.a.a.bb ##23	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00510000048364	ENSGT00390000004808.f ##27	ENSGT00390000010118.c.a.b.j	ENSGT00940000155107.a.a.b ##32	ENSGT00560000078630	ENSGT00950000183008.a.a.a.b	ENSGT00940000178420	ENSGT00940000160424	ENSGT00940000158242	ENSGT00950000183053.D	ENSGT00390000008812.b.a	ENSGT00940000158053	ENSGT00940000164496.a.a
Haplochromini	ANCESTRAL SPECIES	5	ENSGT00390000008551	ENSGT00940000163648.b	ENSGT00940000158729	ENSGT00390000012738	ENSGT00940000169005	ENSGT00390000010028	ENSGT00640000091536	ENSGT00950000182848.c.b.b.a	ENSGT00390000013601	ENSGT00940000157613	ENSGT00390000017955.c	ENSGT00940000156790	ENSGT00950000183028.a.b.b ##16	ENSGT00390000015257	ENSGT00390000011598	ENSGT00950000182941.a.a.b.e.b ##22	ENSGT00950000183163.a.a.bb ##23	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00510000048364	ENSGT00390000004808.f ##27	ENSGT01100000263769.b	ENSGT01070000254348	ENSGT00940000155107.a.a.b ##32	ENSGT00560000078630	ENSGT00950000183008.a.a.a.b	ENSGT00940000178420	ENSGT00940000160424	ENSGT00940000158242	ENSGT00950000183053.D	ENSGT00390000008812.b.a	ENSGT00940000158053
Burton s mouthbrooder	MODERN SPECIES	524	c19h1orf109 (ENSHBUG00000001509)	ago4 (ENSHBUG00000001525)	CLSPN (ENSHBUG00000001542)	ENSHBUG00000001554	cdca5 (ENSHBUG00000001559)	psmb2 (ENSHBUG00000001568)	tfap2e (ENSHBUG00000001580)	NCDN (ENSHBUG00000001587)	KIAA0319L (ENSHBUG00000001599)	cap1 (ENSHBUG00000001615)	ppt1 (ENSHBUG00000001625)	rragcb (ENSHBUG00000001632)	fhl3b (ENSHBUG00000001636) ##16	meaf6 (ENSHBUG00000001648)	stpg1 (ENSHBUG00000001653)	map7d1b (ENSHBUG00000001680) ##22	thrap3b (ENSHBUG00000001708) ##23	eva1bb (ENSHBUG00000001719) ##25	LSM10 (ENSHBUG00000001722)	oscp1a (ENSHBUG00000001728) ##27	ENSHBUG00000001735	ENSHBUG00000001743
Haplochromini_A	ANCESTRAL SPECIES	5	ENSGT00390000008551	ENSGT00940000163648.b	ENSGT00940000158729	ENSGT00390000012738	ENSGT00940000169005	ENSGT00390000010028	ENSGT00640000091536	ENSGT00950000182848.c.b.b.a	ENSGT00390000013601	ENSGT00940000157613	ENSGT00390000017955.c	ENSGT00940000156790	ENSGT00950000183028.a.b.b ##16	ENSGT00390000015257	ENSGT00390000011598	ENSGT00950000182941.a.a.b.e.b ##22	ENSGT00950000183163.a.a.bb ##23	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00510000048364	ENSGT00390000004808.f ##27	ENSGT01100000263769.b	ENSGT01070000254348	ENSGT00940000155107.a.a.b ##32	ENSGT00560000078630	ENSGT00950000183008.a.a.a.b	ENSGT00940000178420	ENSGT00940000160424	ENSGT00940000158242	ENSGT00950000183053.D	ENSGT00390000008812.b.a	ENSGT00940000158053
P. nyererei	MODERN SPECIES	388	ENSPNYG00000002046	ago4 (ENSPNYG00000002089)	CLSPN (ENSPNYG00000002159)	ENSPNYG00000002405	cdca5 (ENSPNYG00000002457)	psmb2 (ENSPNYG00000002470)	tfap2e (ENSPNYG00000002494)	NCDN (ENSPNYG00000002533)	KIAA0319L (ENSPNYG00000002650)	cap1 (ENSPNYG00000002687)	ppt1 (ENSPNYG00000002732)	rragcb (ENSPNYG00000002775)	fhl3b (ENSPNYG00000002809) ##16	meaf6 (ENSPNYG00000002859)	stpg1 (ENSPNYG00000002988)	map7d1b (ENSPNYG00000003016) ##22	thrap3b (ENSPNYG00000003062) ##23	eva1bb (ENSPNYG00000003106) ##25	LSM10 (ENSPNYG00000003138)	oscp1a (ENSPNYG00000003173) ##27	ENSPNYG00000003238	ENSPNYG00000003253	ENSPNYG00000003267	ENSPNYG00000003289	zc3h12ab (ENSPNYG00000003297) ##32	smim13 (ENSPNYG00000003320)	nedd9 (ENSPNYG00000003335)	ENSPNYG00000003341	TMEM170B (ENSPNYG00000003350)	HIVEP1 (ENSPNYG00000003371)	edn1 (ENSPNYG00000003412)
Haplochromini_B	ANCESTRAL SPECIES	1	ENSGT00390000008551	ENSGT00940000163648.b	ENSGT00940000158729	ENSGT00390000012738	ENSGT00940000169005	ENSGT00390000010028	ENSGT00640000091536	ENSGT00950000182848.c.b.b.a	ENSGT00390000013601	ENSGT00940000157613	ENSGT00390000017955.c	ENSGT00940000156790	ENSGT00950000183028.a.b.b ##16	ENSGT00390000015257	ENSGT00390000011598	ENSGT00950000182941.a.a.b.e.b ##22	ENSGT00950000183163.a.a.bb ##23	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00510000048364	ENSGT00390000004808.f ##27	ENSGT00390000010118.c.a.b.j	ENSGT01090000260364.b.b.a	ENSGT00390000010118.c.a.b.i.a	ENSGT01060000249788.a	ENSGT01070000254348.a	ENSGT01070000254348.b	ENSGT00940000155107.a.a.b ##32	ENSGT00560000078630	ENSGT00940000178420	ENSGT00950000183008.a.a.a.b	ENSGT00940000160424
Eastern happy	MODERN SPECIES	13	ENSACLG00000005287	ago4 (ENSACLG00000005181)	CLSPN (ENSACLG00000005132)	ENSACLG00000005127	ENSACLG00000005115	psmb2 (ENSACLG00000005086)	tfap2e (ENSACLG00000005058)	NCDN (ENSACLG00000005026)	KIAA0319L (ENSACLG00000004999)	cap1 (ENSACLG00000004977)	ppt1 (ENSACLG00000004957)	rragcb (ENSACLG00000004938)	fhl3b (ENSACLG00000004926) ##16	meaf6 (ENSACLG00000004907)	stpg1 (ENSACLG00000004902)	map7d1b (ENSACLG00000004864) ##22	thrap3b (ENSACLG00000004763) ##23	eva1bb (ENSACLG00000004750) ##25	LSM10 (ENSACLG00000004728)	oscp1a (ENSACLG00000004687) ##27	ENSACLG00000004680	ENSACLG00000004674	ENSACLG00000004658	ENSACLG00000004641	ENSACLG00000004617	ENSACLG00000004607	ENSACLG00000004542	ENSACLG00000004517	ENSACLG00000004502	zc3h12ab (ENSACLG00000004488) ##32	smim13 (ENSACLG00000004481)
Zebra mbuna	MODERN SPECIES	1104	ENSMZEG00005026347	ago4 (ENSMZEG00005026346)	CLSPN (ENSMZEG00005026344)	ENSMZEG00005026343	ENSMZEG00005026340	psmb2 (ENSMZEG00005026338)	tfap2e (ENSMZEG00005026336)	NCDN (ENSMZEG00005026335)	KIAA0319L (ENSMZEG00005026332)	cap1 (ENSMZEG00005026329)	ppt1 (ENSMZEG00005026327)	rragcb (ENSMZEG00005026324)	fhl3b (ENSMZEG00005026323) ##16	meaf6 (ENSMZEG00005026320)	stpg1 (ENSMZEG00005026316)	map7d1b (ENSMZEG00005026312) ##22	thrap3b (ENSMZEG00005026309) ##23	eva1bb (ENSMZEG00005026308) ##25	LSM10 (ENSMZEG00005026307)	oscp1a (ENSMZEG00005026304) ##27	ENSMZEG00005026303	ENSMZEG00005026301	ENSMZEG00005026299	ENSMZEG00005026298	ENSMZEG00005026296	ENSMZEG00005026294	ENSMZEG00005026293	ENSMZEG00005026291	ENSMZEG00005026289	zc3h12ab (ENSMZEG00005026287) ##32	smim13 (ENSMZEG00005026286)
Lyretail cichlid	MODERN SPECIES	322	ENSNBRG00000013473	ago4 (ENSNBRG00000013492)	CLSPN (ENSNBRG00000013539)	ENSNBRG00000013713	ENSNBRG00000013760	psmb2 (ENSNBRG00000013797)	tfap2e (ENSNBRG00000013819)	ENSNBRG00000013858	ENSNBRG00000013921	cap1 (ENSNBRG00000013979)	ppt1 (ENSNBRG00000014017)	rragcb (ENSNBRG00000014036)	fhl3b (ENSNBRG00000014055) ##16	meaf6 (ENSNBRG00000014080)	stpg1 (ENSNBRG00000014134)	map7d1b (ENSNBRG00000014183) ##22	thrap3b (ENSNBRG00000014237) ##23	eva1bb (ENSNBRG00000014294) ##25	LSM10 (ENSNBRG00000014306)	oscp1a (ENSNBRG00000014319) ##27	ENSNBRG00000014359	zc3h12ab (ENSNBRG00000014376) ##32	smim13 (ENSNBRG00000014425)	nedd9 (ENSNBRG00000014432)	ENSNBRG00000014486	TMEM170B (ENSNBRG00000014493)	HIVEP1 (ENSNBRG00000014508)	edn1 (ENSNBRG00000014550)	si:dkeyp-92c9.2 (ENSNBRG00000014568)	myo1g (ENSNBRG00000014579)	si:ch211-195b13.1 (ENSNBRG00000014644)
Nile tilapia	MODERN SPECIES	13	ENSONIG00000020903	ago4 (ENSONIG00000013603)	CLSPN (ENSONIG00000013618)	ENSONIG00000032443	cdca5 (ENSONIG00000013627)	psmb2 (ENSONIG00000013628)	tfap2e (ENSONIG00000013632)	NCDN (ENSONIG00000013638)	KIAA0319L (ENSONIG00000013646)	cap1 (ENSONIG00000013650)	ppt1 (ENSONIG00000013654)	rragcb (ENSONIG00000013658)	fhl3b (ENSONIG00000016304) ##16	meaf6 (ENSONIG00000013665)	stpg1 (ENSONIG00000013668)	map7d1b (ENSONIG00000013670) ##22	thrap3b (ENSONIG00000013673) ##23	eva1bb (ENSONIG00000013681) ##25	LSM10 (ENSONIG00000020904)	oscp1a (ENSONIG00000013682) ##27	ENSONIG00000032030	ENSONIG00000039124	ENSONIG00000013684	ENSONIG00000028012	ENSONIG00000032847	ENSONIG00000035261	zc3h12ab (ENSONIG00000013685) ##32	smim13 (ENSONIG00000042839)	nedd9 (ENSONIG00000013688)	ENSONIG00000027700	tmem170b (ENSONIG00000027709)
Midas cichlid	MODERN SPECIES	1145	ago4 (ENSACIG00000014548)	ENSACIG00000014590	CLSPN (ENSACIG00000014619)	ENSACIG00000014975	cdca5 (ENSACIG00000014987)	psmb2 (ENSACIG00000014995)	tfap2e (ENSACIG00000015015)	ENSACIG00000015036	KIAA0319L (ENSACIG00000015054)	cap1 (ENSACIG00000015108)	ppt1 (ENSACIG00000015133)	rragcb (ENSACIG00000015168)	fhl3b (ENSACIG00000015186) ##16	meaf6 (ENSACIG00000015202)	stpg1 (ENSACIG00000015255)	map7d1b (ENSACIG00000015299) ##22	thrap3b (ENSACIG00000015331) ##23	eva1bb (ENSACIG00000015385) ##25	LSM10 (ENSACIG00000015420)	oscp1a (ENSACIG00000015426) ##27	ENSACIG00000015456	ENSACIG00000015467	ENSACIG00000015475
Pomacentridae	ANCESTRAL SPECIES	95	ENSGT00390000008551	ENSGT00940000163648.b	ENSGT00940000158729.o	ENSGT00390000012738	ENSGT00940000169005	ENSGT00390000010028	ENSGT00640000091536.u	ENSGT00950000182848.c.b.b.a	ENSGT00390000013601	ENSGT00940000157613	ENSGT00390000017955.c	ENSGT00940000156790	ENSGT00950000183028.a.b.b ##16	ENSGT00390000015257	ENSGT00390000011598	ENSGT00950000182941.a.a.b.e.b ##22	ENSGT00950000183163.a.a.bb ##23	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00510000048364	ENSGT00390000004808.f ##27	ENSGT00390000010118.c.a.b	ENSGT00940000155107.a.a.b ##32	ENSGT00560000078630	ENSGT00950000183008.a.a.a.b	ENSGT00940000160424	ENSGT00940000158242	ENSGT00950000183053.D	ENSGT00390000008812.b.a	ENSGT00940000158053	ENSGT00940000164496.a.a	ENSGT00950000182978.B
Pomacentridae_A	ANCESTRAL SPECIES																	ENSGT00950000182941.a.a.b.e.b ##22
Spiny chromis	MODERN SPECIES	328																map7d1b (ENSAPOG00000002841) ##22	ncln (ENSAPOG00000002896)	s1pr4 (ENSAPOG00000002927)	MYO9B (ENSAPOG00000003038)	use1 (ENSAPOG00000003076)	ENSAPOG00000003094	insrb (ENSAPOG00000003154)	ARHGEF18 (ENSAPOG00000003252)
Amphiprion	ANCESTRAL SPECIES																	ENSGT00950000182941.a.a.b.e.b ##22
Clown anemonefish	MODERN SPECIES	3609																map7d1b (ENSAOCG00000002968) ##22	mitd1 (ENSAOCG00000002973)	mrpl30 (ENSAOCG00000002976)	txndc9 (ENSAOCG00000002981)
Bicolor damselfish	DUPLICATION
Bicolor damselfish	MODERN SPECIES	1878												ppt1 (ENSSPAG00000014289)	rragcb (ENSSPAG00000014315)	fhl3b (ENSSPAG00000014341) ##16	meaf6 (ENSSPAG00000014360)	map7d1b (ENSSPAG00000014371) ##22	ENSSPAG00000014399	ENSSPAG00000014411 ##22
Bicolor damselfish	MODERN SPECIES	1878										ppt1 (ENSSPAG00000014289)	rragcb (ENSSPAG00000014315)	fhl3b (ENSSPAG00000014341) ##16	meaf6 (ENSSPAG00000014360)	map7d1b (ENSSPAG00000014371) ##22	ENSSPAG00000014399	ENSSPAG00000014411 ##22
Percomorphaceae_C	ANCESTRAL SPECIES	15	ENSGT00390000008551	ENSGT00940000163648.b	ENSGT00940000158729	ENSGT00390000012738	ENSGT00940000169005	ENSGT00390000010028	ENSGT00640000091536	ENSGT00950000182848.c.b.b.a	ENSGT00390000013601	ENSGT00940000157613	ENSGT00390000017955.c	ENSGT00940000156790	ENSGT00950000183028.a.b.b ##16	ENSGT00390000015257	ENSGT00390000011598	ENSGT00950000182941.a.a.b.e.b ##22	ENSGT00950000183163.a.a.bb ##23	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00510000048364	ENSGT00390000004808.f ##27	ENSGT00390000010118.c.a.b	ENSGT00940000155107.a.a.b ##32	ENSGT00560000078630	ENSGT00950000183008.a.a.a.b	ENSGT00940000160424	ENSGT00940000158242	ENSGT00950000183053.D	ENSGT00390000008812.b.a	ENSGT00940000158053	ENSGT00940000164496.a.a	ENSGT00950000182978.B
Percomorphaceae_D	ANCESTRAL SPECIES	14	ENSGT00390000008551	ENSGT00940000163648.b	ENSGT00940000158729	ENSGT00390000012738	ENSGT00940000169005	ENSGT00390000010028	ENSGT00640000091536	ENSGT00950000182848.c.b.b.a	ENSGT00390000013601	ENSGT00940000157613	ENSGT00390000017955.c	ENSGT00940000156790	ENSGT00950000183028.a.b.b ##16	ENSGT00390000015257	ENSGT00390000011598	ENSGT00950000182941.a.a.b.e.b ##22	ENSGT00950000183163.a.a.bb ##23	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00510000048364	ENSGT00390000004808.f ##27	ENSGT00390000010118.c.a.b	ENSGT00940000155107.a.a.b ##32	ENSGT00560000078630	ENSGT00950000183008.a.a.a.b	ENSGT00940000160424	ENSGT00940000158242	ENSGT00950000183053.D	ENSGT00390000008812.b.a	ENSGT00940000158053	ENSGT00940000164496.a.a	ENSGT00950000182978.B
Carangaria	ANCESTRAL SPECIES	14	ENSGT00390000008551	ENSGT00940000163648.b	ENSGT00940000158729	ENSGT00390000012738	ENSGT00940000169005	ENSGT00390000010028	ENSGT00640000091536	ENSGT00950000182848.c.b.b.a	ENSGT00390000013601	ENSGT00940000157613	ENSGT00390000017955.c	ENSGT00940000156790	ENSGT00950000183028.a.b.b ##16	ENSGT00390000015257	ENSGT00390000011598	ENSGT00950000182941.a.a.b.e.b ##22	ENSGT00950000183163.a.a.bb ##23	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00510000048364	ENSGT00390000004808.f ##27	ENSGT00390000010118.c.a.b	ENSGT00940000155107.a.a.b ##32	ENSGT00560000078630	ENSGT00950000183008.a.a.a.b	ENSGT00940000160424	ENSGT00940000158242	ENSGT00950000183053.D	ENSGT00390000008812.b.a	ENSGT00940000158053	ENSGT00940000164496.a.a	ENSGT00950000182978.B
Carangaria_A	ANCESTRAL SPECIES	16	ENSGT00390000008551	ENSGT00940000163648.b	ENSGT00940000158729	ENSGT00390000012738	ENSGT00940000169005	ENSGT00390000010028	ENSGT00640000091536	ENSGT00950000182848.c.b.b.a	ENSGT00390000013601	ENSGT00940000157613	ENSGT00390000017955.c	ENSGT00940000156790	ENSGT00950000183028.a.b.b ##16	ENSGT00390000015257	ENSGT00390000011598	ENSGT00950000182941.a.a.b.e.b ##22	ENSGT00950000183163.a.a.bb ##23	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00510000048364	ENSGT00390000004808.f ##27	ENSGT00390000010118.c.a.b	ENSGT00940000155107.a.a.b ##32	ENSGT00560000078630	ENSGT00950000183008.a.a.a.b	ENSGT00940000160424	ENSGT00940000158242	ENSGT00950000183053.D	ENSGT00390000008812.b.a	ENSGT00940000158053	ENSGT00940000164496.a.a	ENSGT00950000182978.B
Barramundi perch	MODERN SPECIES	14	LOXL4 (ENSLCAG00010004189)	zgc:123010 (ENSLCAG00010004184)	pyroxd2 (ENSLCAG00010004145)	slc25a28 (ENSLCAG00010004135)	nkx3.3 (ENSLCAG00010004133)	nkx2.3 (ENSLCAG00010004130)	got1 (ENSLCAG00010004125)	CNNM1 (ENSLCAG00010004120)	HPSE2 (ENSLCAG00010004113)	hps1 (ENSLCAG00010004110)	st3gal7 (ENSLCAG00010004103)	ENSLCAG00010004098	morn4 (ENSLCAG00010004090)	ENSLCAG00010004086	ENSLCAG00010004083	map7d1b (ENSLCAG00010004081) ##22	ENSLCAG00010004074	LSM10 (ENSLCAG00010004071)	oscp1a (ENSLCAG00010004068) ##27	ENSLCAG00010004066	zc3h12ab (ENSLCAG00010004058) ##32	smim13 (ENSLCAG00010004056)
Seriola	ANCESTRAL SPECIES	42														ENSGT00390000015257	ENSGT00390000011598	ENSGT00950000182941.a.a.b.e.b ##22	ENSGT00950000183163.a.a.bb ##23	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00510000048364	ENSGT00390000004808.f ##27	ENSGT00390000010118.c.a.b	ENSGT00940000155107.a.a.b ##32	ENSGT00560000078630	ENSGT00950000183008.a.a.a.b	ENSGT00940000160424	ENSGT00940000158242	ENSGT00950000183053.D	ENSGT00390000008812.b.a	ENSGT00940000158053	ENSGT00940000164496.a.a	ENSGT00950000182978.B
Greater amberjack	MODERN SPECIES	94														meaf6 (ENSSDUG00000006968)	stpg1 (ENSSDUG00000006981)	map7d1b (ENSSDUG00000007025) ##22	thrap3b (ENSSDUG00000007054) ##23	eva1bb (ENSSDUG00000007086) ##25	LSM10 (ENSSDUG00000007090)	oscp1a (ENSSDUG00000007103) ##27	ENSSDUG00000007130	ENSSDUG00000007152	zc3h12ab (ENSSDUG00000007162) ##32	smim13 (ENSSDUG00000007168)	nedd9 (ENSSDUG00000007176)	TMEM170B (ENSSDUG00000007203)	HIVEP1 (ENSSDUG00000007210)	edn1 (ENSSDUG00000007218)	si:dkeyp-92c9.2 (ENSSDUG00000007223)	myo1g (ENSSDUG00000007234)	si:ch211-195b13.1 (ENSSDUG00000007289)
Yellowtail amberjack	MODERN SPECIES	2850													ENSSLDG00000009021	meaf6 (ENSSLDG00000009035)	stpg1 (ENSSLDG00000009059)	map7d1b (ENSSLDG00000009085) ##22	ENSSLDG00000009184	thrap3b (ENSSLDG00000009210) ##23	eva1bb (ENSSLDG00000009233) ##25	oscp1a (ENSSLDG00000009259) ##27	ENSSLDG00000009301	zc3h12ab (ENSSLDG00000009317) ##32	smim13 (ENSSLDG00000009331)	nedd9 (ENSSLDG00000009345)	TMEM170B (ENSSLDG00000009358)	HIVEP1 (ENSSLDG00000009376)
Pleuronectoidei	ANCESTRAL SPECIES	33	ENSGT00940000163648.b	ENSGT00940000158729	ENSGT00390000012738	ENSGT00940000169005	ENSGT00390000010028	ENSGT00640000091536	ENSGT00950000182848.c.b.b.a	ENSGT00390000013601	ENSGT00940000157613	ENSGT00390000017955.c	ENSGT00940000156790	ENSGT00950000183031.A.a.a	ENSGT00950000183028.a.b.b ##16	ENSGT00390000015257	ENSGT00390000011598	ENSGT00950000182941.a.a.b.e.b ##22	ENSGT00950000183163.a.a.bb ##23	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00510000048364	ENSGT00390000004808.f ##27	ENSGT00940000177439	ENSGT00940000155107.a.a.b ##32	ENSGT00560000078630	ENSGT00950000183008.a.a.a.b	ENSGT00940000160424	ENSGT00940000158242	ENSGT00950000183053.D	ENSGT00390000008812.b.a	ENSGT00940000158053	ENSGT00940000164496.a.a	ENSGT00950000182978.B
Tongue sole	MODERN SPECIES	9	ENSCSEG00000010728	ago4 (ENSCSEG00000010696)	CLSPN (ENSCSEG00000010681)	ENSCSEG00000010661	cdca5 (ENSCSEG00000010655)	psmb2 (ENSCSEG00000010643)	tfap2e (ENSCSEG00000010632)	NCDN (ENSCSEG00000010623)	ENSCSEG00000010571	cap1 (ENSCSEG00000010543)	ppt1 (ENSCSEG00000010527)	rragcb (ENSCSEG00000010508)	fhl3b (ENSCSEG00000010500) ##16	meaf6 (ENSCSEG00000010482)	stpg1 (ENSCSEG00000010471)	map7d1b (ENSCSEG00000010416) ##22	thrap3b (ENSCSEG00000010392) ##23	eva1bb (ENSCSEG00000010382) ##25	LSM10 (ENSCSEG00000010374)	oscp1a (ENSCSEG00000010362) ##27	zc3h12ab (ENSCSEG00000010348) ##32	smim13 (ENSCSEG00000010342)	nedd9 (ENSCSEG00000010325)	TMEM170B (ENSCSEG00000010318)	HIVEP1 (ENSCSEG00000010301)	edn1 (ENSCSEG00000010290)	si:dkeyp-92c9.2 (ENSCSEG00000010283)	myo1g (ENSCSEG00000010242)	si:ch211-195b13.1 (ENSCSEG00000010202)	eya3 (ENSCSEG00000010177)	ENSCSEG00000010138
Turbot	MODERN SPECIES	14	ENSSMAG00000000763	ENSSMAG00000000785	ago4 (ENSSMAG00000000808)	CLSPN (ENSSMAG00000000941)	ENSSMAG00000000955	ENSSMAG00000037330	TFAP2E (ENSSMAG00000000991)	NCDN (ENSSMAG00000001017)	KIAA0319L (ENSSMAG00000001024)	ENSSMAG00000001063	ppt1 (ENSSMAG00000001080)	rragcb (ENSSMAG00000001115)	fhl3b (ENSSMAG00000001140) ##16	meaf6 (ENSSMAG00000001163)	stpg1 (ENSSMAG00000035705)	map7d1b (ENSSMAG00000001191) ##22	thrap3b (ENSSMAG00000001259) ##23	eva1bb (ENSSMAG00000001280) ##25	LSM10 (ENSSMAG00000001297)	oscp1a (ENSSMAG00000001314) ##27	ENSSMAG00000021680	zc3h12ab (ENSSMAG00000001367) ##32	smim13 (ENSSMAG00000030110)	nedd9 (ENSSMAG00000001395)	TMEM170B (ENSSMAG00000030357)	HIVEP1 (ENSSMAG00000001439)	edn1 (ENSSMAG00000001461)	si:dkeyp-92c9.2 (ENSSMAG00000001471)	myo1g (ENSSMAG00000001483)	si:ch211-195b13.1 (ENSSMAG00000001608)	eya3 (ENSSMAG00000001662)
Anabantaria	ANCESTRAL SPECIES	16	ENSGT00940000163648.b	ENSGT00940000158729	ENSGT00390000012738	ENSGT00940000169005	ENSGT00390000010028	ENSGT00640000091536	ENSGT00950000182848.c.b.b.a	ENSGT00390000013601	ENSGT00940000157613	ENSGT00390000017955.c	ENSGT00940000156790	ENSGT00950000183031.A.a.a	ENSGT00950000183028.a.b.b ##16	ENSGT00390000015257	ENSGT00390000011598	ENSGT00950000182941.a.a.b.e.b ##22	ENSGT00950000183163.a.a.bb ##23	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00510000048364	ENSGT00390000004808.f ##27	ENSGT00390000010118.c.a.b	ENSGT00940000155107.a.a.b ##32	ENSGT00560000078630	ENSGT00950000183008.a.a.a.b	ENSGT00940000160424	ENSGT00940000158242	ENSGT00950000183053.D	ENSGT00390000008812.b.a	ENSGT00940000158053	ENSGT00940000164496.a.a	ENSGT00950000182978.B
Zig-zag eel	MODERN SPECIES	2	ENSMAMG00000003839	ago4 (ENSMAMG00000003874)	CLSPN (ENSMAMG00000003927)	ENSMAMG00000003980	ENSMAMG00000003988	psmb2 (ENSMAMG00000003992)	TFAP2E (ENSMAMG00000004022)	NCDN (ENSMAMG00000004058)	KIAA0319L (ENSMAMG00000004065)	ENSMAMG00000004094	ppt1 (ENSMAMG00000004148)	rragcb (ENSMAMG00000004171)	fhl3b (ENSMAMG00000004199) ##16	meaf6 (ENSMAMG00000004214)	stpg1 (ENSMAMG00000004237)	map7d1b (ENSMAMG00000004292) ##22	thrap3b (ENSMAMG00000004348) ##23	eva1bb (ENSMAMG00000025345) ##25	ENSMAMG00000028468	oscp1a (ENSMAMG00000004443) ##27	ENSMAMG00000027271	ENSMAMG00000004529	zc3h12ab (ENSMAMG00000004483) ##32	smim13 (ENSMAMG00000028528)	nedd9 (ENSMAMG00000004548)	TMEM170B (ENSMAMG00000024794)	HIVEP1 (ENSMAMG00000004590)	edn1 (ENSMAMG00000004638)	si:dkeyp-92c9.2 (ENSMAMG00000027420)	myo1g (ENSMAMG00000004681)	si:ch211-195b13.1 (ENSMAMG00000004750)
Anabantoidei	ANCESTRAL SPECIES	19	ENSGT00390000008551	ENSGT00940000163648.b	ENSGT00940000158729	ENSGT00390000012738	ENSGT00940000169005	ENSGT00390000010028	ENSGT00640000091536	ENSGT00950000182848.c.b.b.a	ENSGT00390000013601	ENSGT00940000157613	ENSGT00390000017955.c	ENSGT00940000156790	ENSGT00950000183028.a.b.b ##16	ENSGT00390000015257	ENSGT00390000011598	ENSGT00950000182941.a.a.b.e.b ##22	ENSGT00950000183163.a.a.bb ##23	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00510000048364	ENSGT00390000004808.f ##27	ENSGT00390000010118.c.a.b	ENSGT00940000155107.a.a.b ##32	ENSGT00560000078630	ENSGT00950000183008.a.a.a.b	ENSGT00940000160424	ENSGT00940000158242	ENSGT00950000183053.D	ENSGT00390000008812.b.a	ENSGT00940000158053	ENSGT00940000164496.a.a	ENSGT00950000182978.B
Siamese fighting fish	MODERN SPECIES	2	ENSBSLG00000019513	ago4 (ENSBSLG00000019879)	CLSPN (ENSBSLG00000020294)	ENSBSLG00000020312	cdca5 (ENSBSLG00000020313)	psmb2 (ENSBSLG00000020317)	tfap2e (ENSBSLG00000020341)	NCDN (ENSBSLG00000020347)	KIAA0319L (ENSBSLG00000021191)	cap1 (ENSBSLG00000021643)	ppt1 (ENSBSLG00000021676)	rragcb (ENSBSLG00000021829)	fhl3b (ENSBSLG00000021855) ##16	meaf6 (ENSBSLG00000021881)	stpg1 (ENSBSLG00000021909)	map7d1b (ENSBSLG00000021935) ##22	thrap3b (ENSBSLG00000021994) ##23	eva1bb (ENSBSLG00000022015) ##25	LSM10 (ENSBSLG00000022026)	oscp1a (ENSBSLG00000022029) ##27	ENSBSLG00000022042	ENSBSLG00000022051 ##32	smim13 (ENSBSLG00000022059)	nedd9 (ENSBSLG00000022070)	TMEM170B (ENSBSLG00000022084)	HIVEP1 (ENSBSLG00000022092)	edn1 (ENSBSLG00000022107)	si:dkeyp-92c9.2 (ENSBSLG00000022111)	myo1g (ENSBSLG00000022131)	si:ch211-195b13.1 (ENSBSLG00000022497)	eya3 (ENSBSLG00000023364)
Climbing perch	MODERN SPECIES	2	ENSATEG00000006755	ago4 (ENSATEG00000006717)	CLSPN (ENSATEG00000006697)	ENSATEG00000006685	ENSATEG00000006679	psmb2 (ENSATEG00000006643)	TFAP2E (ENSATEG00000006627)	NCDN (ENSATEG00000006619)	KIAA0319L (ENSATEG00000006607)	ENSATEG00000006592	ppt1 (ENSATEG00000028900)	rragcb (ENSATEG00000006525)	fhl3b (ENSATEG00000006513) ##16	meaf6 (ENSATEG00000006466)	stpg1 (ENSATEG00000006457)	map7d1b (ENSATEG00000006432) ##22	thrap3b (ENSATEG00000006350) ##23	eva1bb (ENSATEG00000006328) ##25	LSM10 (ENSATEG00000006310)	oscp1a (ENSATEG00000006263) ##27	ENSATEG00000006247	zc3h12ab (ENSATEG00000006140) ##32	smim13 (ENSATEG00000006130)	nedd9 (ENSATEG00000006076)	TMEM170B (ENSATEG00000028130)	HIVEP1 (ENSATEG00000005949)	edn1 (ENSATEG00000026028)	si:dkeyp-92c9.2 (ENSATEG00000005914)	myo1g (ENSATEG00000005817)	si:ch211-195b13.1 (ENSATEG00000028776)	eya3 (ENSATEG00000005730)
Eupercaria	ANCESTRAL SPECIES	11	ENSGT00390000008551	ENSGT00940000163648.b	ENSGT00940000158729	ENSGT00390000012738	ENSGT00940000169005	ENSGT00390000010028	ENSGT00640000091536	ENSGT00950000182848.c.b.b.a	ENSGT00390000013601	ENSGT00940000157613	ENSGT00390000017955.c	ENSGT00940000156790	ENSGT00950000183028.a.b.b ##16	ENSGT00390000015257	ENSGT00390000011598	ENSGT00950000182941.a.a.b.e.b ##22	ENSGT00950000183163.a.a.bb ##23	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00510000048364	ENSGT00390000004808.f ##27	ENSGT00390000010118.c.a.b	ENSGT00940000155107.a.a.b ##32	ENSGT00560000078630	ENSGT00950000183008.a.a.a.b	ENSGT00940000160424	ENSGT00940000158242	ENSGT00950000183053.D	ENSGT00390000008812.b.a	ENSGT00940000158053	ENSGT00940000164496.a.a	ENSGT00950000182978.B
Tetraodontidae	ANCESTRAL SPECIES	43	ENSGT00390000011115	ENSGT00390000008551	ENSGT00940000163648.b	ENSGT00940000158729	ENSGT00390000012738	ENSGT00940000169005	ENSGT00390000010028	ENSGT00640000091536	ENSGT00950000182848.c.b.b.a	ENSGT00390000013601	ENSGT00940000157613	ENSGT00390000017955.c	ENSGT00940000156790	ENSGT00950000183028.a.b.b ##16	ENSGT00390000015257	ENSGT00950000182941.a.a.b.e.b ##22	ENSGT00950000183163.a.a.bb ##23	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00510000048364	ENSGT00390000010118.c.a.b	ENSGT00940000155107.a.a.b ##32	ENSGT00560000078630	ENSGT00950000183008.a.a.a.b.e	ENSGT00940000160424	ENSGT00940000158242	ENSGT00950000183053.D	ENSGT00390000008812.b.a	ENSGT00940000158053	ENSGT00940000164496.a.a	ENSGT00950000182978.B	ENSGT01090000260093.b.f
Fugu	MODERN SPECIES	3	C1orf109 (ENSTRUG00000024339)	ENSTRUG00000007934	ago4 (ENSTRUG00000008052)	CLSPN (ENSTRUG00000008616)	ENSTRUG00000019824	cdca5 (ENSTRUG00000008868)	psmb2 (ENSTRUG00000008871)	tfap2e (ENSTRUG00000008956)	NCDN (ENSTRUG00000009054)	KIAA0319L (ENSTRUG00000009252)	cap1 (ENSTRUG00000009345)	ppt1 (ENSTRUG00000009602)	rragcb (ENSTRUG00000009884)	fhl3b (ENSTRUG00000010010) ##16	meaf6 (ENSTRUG00000010159)	map7d1b (ENSTRUG00000010226) ##22	thrap3b (ENSTRUG00000010336) ##23	eva1bb (ENSTRUG00000010516) ##25	LSM10 (ENSTRUG00000010531)	ENSTRUG00000025207	ENSTRUG00000010565 ##32	smim13 (ENSTRUG00000020110)	smim13 (ENSTRUG00000025620)	nedd9 (ENSTRUG00000010644)	TMEM170B (ENSTRUG00000024077)	HIVEP1 (ENSTRUG00000010871)	edn1 (ENSTRUG00000024552)	si:dkeyp-92c9.2 (ENSTRUG00000011007)	myo1g (ENSTRUG00000011023)	si:ch211-195b13.1 (ENSTRUG00000011468)	eya3 (ENSTRUG00000011700)
Tetraodon	MODERN SPECIES	16	ENSTNIG00000017737	ENSTNIG00000017736	cdca8 (ENSTNIG00000001048)	ENSTNIG00000006333	ENSTNIG00000006332	ago4 (ENSTNIG00000006331)	CLSPN (ENSTNIG00000006330)	ENSTNIG00000004591	NCDN (ENSTNIG00000004590)	KIAA0319L (ENSTNIG00000004589)	cap1 (ENSTNIG00000004588)	ppt1 (ENSTNIG00000004587)	rragcb (ENSTNIG00000004586)	fhl3b (ENSTNIG00000004585) ##16	meaf6 (ENSTNIG00000004584)	map7d1b (ENSTNIG00000004583) ##22	thrap3b (ENSTNIG00000004582) ##23	eva1bb (ENSTNIG00000004581) ##25	oscp1a (ENSTNIG00000019817) ##27	zc3h12ab (ENSTNIG00000001274) ##32	msto1 (ENSTNIG00000005572)	srsf4 (ENSTNIG00000005573)	xkr8.3 (ENSTNIG00000005574)	eya3 (ENSTNIG00000000209)	si:ch211-195b13.1 (ENSTNIG00000005575)	ENSTNIG00000005576	srsf4 (ENSTNIG00000000115)	xkr8.3 (ENSTNIG00000003808)	eya3 (ENSTNIG00000008190)	si:ch211-195b13.1 (ENSTNIG00000002279)	myo1g (ENSTNIG00000004555)
Eupecaria_A	ANCESTRAL SPECIES	12	ENSGT00390000008551	ENSGT00940000163648.b	ENSGT00940000158729	ENSGT00390000012738	ENSGT00940000169005	ENSGT00390000010028	ENSGT00640000091536	ENSGT00950000182848.c.b.b.a	ENSGT00390000013601	ENSGT00940000157613	ENSGT00390000017955.c	ENSGT00940000156790	ENSGT00950000183028.a.b.b ##16	ENSGT00390000015257	ENSGT00390000011598	ENSGT00950000182941.a.a.b.e.b ##22	ENSGT00950000183163.a.a.bb ##23	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00510000048364	ENSGT00390000004808.f ##27	ENSGT00390000010118.c.a.b	ENSGT00940000155107.a.a.b ##32	ENSGT00560000078630	ENSGT00950000183008.a.a.a.b	ENSGT00940000160424	ENSGT00940000158242	ENSGT00950000183053.D	ENSGT00390000008812.b.a	ENSGT00940000158053	ENSGT00940000164496.a.a	ENSGT00950000182978.B
Ballan wrasse	MODERN SPECIES	178										cap1 (ENSLBEG00000018203)	ppt1 (ENSLBEG00000018087)	rragcb (ENSLBEG00000018067)	fhl3b (ENSLBEG00000018044) ##16	meaf6 (ENSLBEG00000018002)	stpg1 (ENSLBEG00000017959)	map7d1b (ENSLBEG00000017860) ##22	thrap3b (ENSLBEG00000017803) ##23	eva1bb (ENSLBEG00000017790) ##25	LSM10 (ENSLBEG00000017764)	ENSLBEG00000017744	oscp1a (ENSLBEG00000017707) ##27	ENSLBEG00000017687	ENSLBEG00000017654	zc3h12ab (ENSLBEG00000017593) ##32	smim13 (ENSLBEG00000017560)	nedd9 (ENSLBEG00000017548)	TMEM170B (ENSLBEG00000017533)	HIVEP1 (ENSLBEG00000017512)	edn1 (ENSLBEG00000017479)	si:dkeyp-92c9.2 (ENSLBEG00000017467)	myo1g (ENSLBEG00000017408)
Eupecaria_B	ANCESTRAL SPECIES	12	ENSGT00390000008551	ENSGT00940000163648.b	ENSGT00940000158729	ENSGT00390000012738	ENSGT00940000169005	ENSGT00390000010028	ENSGT00640000091536	ENSGT00950000182848.c.b.b.a	ENSGT00390000013601	ENSGT00940000157613	ENSGT00390000017955.c	ENSGT00940000156790	ENSGT00950000183028.a.b.b ##16	ENSGT00390000015257	ENSGT00390000011598	ENSGT00950000182941.a.a.b.e.b ##22	ENSGT00950000183163.a.a.bb ##23	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00510000048364	ENSGT00390000004808.f ##27	ENSGT00390000010118.c.a.b	ENSGT00940000155107.a.a.b ##32	ENSGT00560000078630	ENSGT00950000183008.a.a.a.b	ENSGT00940000160424	ENSGT00940000158242	ENSGT00950000183053.D	ENSGT00390000008812.b.a	ENSGT00940000158053	ENSGT00940000164496.a.a	ENSGT00950000182978.B
Perciformes	ANCESTRAL SPECIES	11	ENSGT00390000008551	ENSGT00940000163648.b	ENSGT00940000158729	ENSGT00390000012738	ENSGT00940000169005	ENSGT00390000010028	ENSGT00640000091536	ENSGT00950000182848.c.b.b.a	ENSGT00390000013601	ENSGT00940000157613	ENSGT00390000017955.c	ENSGT00940000156790	ENSGT00950000183028.a.b.b ##16	ENSGT00390000015257	ENSGT00390000011598	ENSGT00950000182941.a.a.b.e.b ##22	ENSGT00950000183163.a.a.bb ##23	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00510000048364	ENSGT00390000004808.f ##27	ENSGT00390000010118.c.a.b	ENSGT00940000155107.a.a.b ##32	ENSGT00560000078630	ENSGT00950000183008.a.a.a.b	ENSGT00940000160424	ENSGT00940000158242	ENSGT00950000183053.D	ENSGT00390000008812.b.a	ENSGT00940000158053	ENSGT00940000164496.a.a	ENSGT00950000182978.B
Cottioidei	ANCESTRAL SPECIES	16	ENSGT00390000008551	ENSGT00940000163648.b	ENSGT00940000158729	ENSGT00390000012738	ENSGT00940000169005	ENSGT00390000010028	ENSGT00640000091536	ENSGT00950000182848.c.b.b.a	ENSGT00390000013601	ENSGT00940000157613	ENSGT00390000017955.c	ENSGT00940000156790	ENSGT00950000183028.a.b.b ##16	ENSGT00390000015257	ENSGT00390000011598	ENSGT00950000182941.a.a.b.e.b ##22	ENSGT00950000183163.a.a.bb ##23	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00510000048364	ENSGT00390000004808.f ##27	ENSGT00940000155107.a.a.b ##32	ENSGT00560000078630	ENSGT00950000183008.a.a.a.b	ENSGT00940000160424	ENSGT00940000158242	ENSGT00950000183053.D	ENSGT00390000008812.b.a	ENSGT00940000158053	ENSGT00940000164496.a.a	ENSGT00950000182978.B	ENSGT01090000260093.b.f
Lumpfish	MODERN SPECIES	2	ENSCLMG00005022728	ago4 (ENSCLMG00005022462)	CLSPN (ENSCLMG00005022434)	ENSCLMG00005022430	cdca5 (ENSCLMG00005022429)	psmb2 (ENSCLMG00005022422)	tfap2e (ENSCLMG00005022419)	NCDN (ENSCLMG00005022416)	KIAA0319L (ENSCLMG00005022250)	cap1 (ENSCLMG00005022185)	ppt1 (ENSCLMG00005022130)	rragcb (ENSCLMG00005022126)	fhl3b (ENSCLMG00005022125) ##16	meaf6 (ENSCLMG00005022124)	stpg1 (ENSCLMG00005022122)	map7d1b (ENSCLMG00005022121) ##22	thrap3b (ENSCLMG00005022119) ##23	eva1bb (ENSCLMG00005022118) ##25	LSM10 (ENSCLMG00005022117)	oscp1a (ENSCLMG00005022114) ##27	zc3h12ab (ENSCLMG00005022113) ##32	smim13 (ENSCLMG00005022112)	nedd9 (ENSCLMG00005022110)	TMEM170B (ENSCLMG00005022109)	HIVEP1 (ENSCLMG00005022108)	ENSCLMG00005022107	ENSCLMG00005022106	edn1 (ENSCLMG00005022105)	si:dkeyp-92c9.2 (ENSCLMG00005022104)	myo1g (ENSCLMG00005021011)	si:ch211-195b13.1 (ENSCLMG00005020929)
Stickleback	MODERN SPECIES	9	c19h1orf109 (ENSGACG00000002689)	ENSGACG00000002688	ago4 (ENSGACG00000002683)	ENSGACG00000002679	ENSGACG00000002678	cdca5 (ENSGACG00000002675)	psmb2 (ENSGACG00000002674)	tfap2e (ENSGACG00000002672)	NCDN (ENSGACG00000002669)	KIAA0319L (ENSGACG00000002660)	cap1 (ENSGACG00000002653)	ppt1 (ENSGACG00000002641)	rragcb (ENSGACG00000002629)	fhl3b (ENSGACG00000002619) ##16	meaf6 (ENSGACG00000002615)	map7d1b (ENSGACG00000002607) ##22	pkhd1l1.2 (ENSGACG00000002583)	nudcd1 (ENSGACG00000002575)	trhrb (ENSGACG00000002573)	pleca (ENSGACG00000002566)	ENSGACG00000002563	ENSGACG00000002562	slc52a2 (ENSGACG00000002556)	ENSGACG00000002548	nfatc1 (ENSGACG00000002545)	atp9b (ENSGACG00000002539)	sall3b (ENSGACG00000002533)	GALR1 (ENSGACG00000002526)	ENSGACG00000002525	ENSGACG00000002516	scn1bb (ENSGACG00000002503)
Perciformes_a	ANCESTRAL SPECIES	14	ENSGT00940000163648.b	ENSGT00940000158729	ENSGT00390000012738	ENSGT00940000169005	ENSGT00390000010028	ENSGT00640000091536	ENSGT00950000182848.c.b.b.a	ENSGT00390000013601	ENSGT00940000157613	ENSGT00390000017955.c	ENSGT00940000156790	ENSGT00950000183031.A.a.a	ENSGT00950000183028.a.b.b ##16	ENSGT00390000015257	ENSGT00390000011598	ENSGT00950000182941.a.a.b.e.b ##22	ENSGT00950000183163.a.a.bb ##23	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00510000048364	ENSGT00390000004808.f ##27	ENSGT00390000010118.c.a.b	ENSGT00940000155107.a.a.b ##32	ENSGT00560000078630	ENSGT00950000183008.a.a.a.b	ENSGT00940000160424	ENSGT00940000158242	ENSGT00950000183053.D	ENSGT00390000008812.b.a	ENSGT00940000158053	ENSGT00940000164496.a.a	ENSGT00950000182978.B
Pike perch	MODERN SPECIES	13	ENSSLUG00000011352	ago4 (ENSSLUG00000006092)	CLSPN (ENSSLUG00000005829)	ENSSLUG00000005827	cdca5 (ENSSLUG00000005818)	psmb2 (ENSSLUG00000005805)	tfap2e (ENSSLUG00000005788)	NCDN (ENSSLUG00000005782)	KIAA0319L (ENSSLUG00000004935)	cap1 (ENSSLUG00000004853)	ppt1 (ENSSLUG00000004585)	rragcb (ENSSLUG00000004552)	fhl3b (ENSSLUG00000004540) ##16	meaf6 (ENSSLUG00000004526)	stpg1 (ENSSLUG00000004518)	map7d1b (ENSSLUG00000004454) ##22	thrap3b (ENSSLUG00000004422) ##23	eva1bb (ENSSLUG00000004412) ##25	LSM10 (ENSSLUG00000004403)	oscp1a (ENSSLUG00000004327) ##27	ENSSLUG00000004314	ENSSLUG00000004309	ENSSLUG00000004301	zc3h12ab (ENSSLUG00000004297) ##32	smim13 (ENSSLUG00000004292)	nedd9 (ENSSLUG00000004286)	TMEM170B (ENSSLUG00000004281)	HIVEP1 (ENSSLUG00000004271)	edn1 (ENSSLUG00000004261)	si:dkeyp-92c9.2 (ENSSLUG00000004255)	myo1g (ENSSLUG00000004127)
Channel bull blenny	MODERN SPECIES	2	ENSCGOG00000005608	ago4 (ENSCGOG00000005647)	CLSPN (ENSCGOG00000008234)	ENSCGOG00000008245	cdca5 (ENSCGOG00000008246)	psmb2 (ENSCGOG00000008253)	tfap2e (ENSCGOG00000008293)	NCDN (ENSCGOG00000008308)	KIAA0319L (ENSCGOG00000008351)	cap1 (ENSCGOG00000009184)	ppt1 (ENSCGOG00000009478)	rragcb (ENSCGOG00000009623)	fhl3b (ENSCGOG00000009706) ##16	meaf6 (ENSCGOG00000009716)	stpg1 (ENSCGOG00000009789)	map7d1b (ENSCGOG00000009797) ##22	thrap3b (ENSCGOG00000009838) ##23	eva1bb (ENSCGOG00000009852) ##25	LSM10 (ENSCGOG00000009858)	oscp1a (ENSCGOG00000009863) ##27	ENSCGOG00000009889	zc3h12ab (ENSCGOG00000009896) ##32	smim13 (ENSCGOG00000009899)	nedd9 (ENSCGOG00000009901)	TMEM170B (ENSCGOG00000009902)	ENSCGOG00000009908	ENSCGOG00000009927	ENSCGOG00000009931	ENSCGOG00000009936	ENSCGOG00000009965	ENSCGOG00000009966
Eupecaria_C	ANCESTRAL SPECIES	13	ENSGT00940000164552	ENSGT00390000011115	ENSGT00390000008551	ENSGT00940000163648.b	ENSGT00940000158729	ENSGT00390000012738	ENSGT00640000091536	ENSGT00950000182848.c.b.b.a	ENSGT00390000013601	ENSGT00940000157613	ENSGT00390000017955.c	ENSGT00940000156790	ENSGT00950000183028.a.b.b ##16	ENSGT00390000015257	ENSGT00390000011598	ENSGT00950000182941.a.a.b.e.b ##22	ENSGT00950000183163.a.a.bb ##23	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00510000048364	ENSGT00390000004808.f ##27	ENSGT00390000010118.c.a.b	ENSGT00940000155107.a.a.b ##32	ENSGT00560000078630	ENSGT00950000183008.a.a.a.b	ENSGT00940000160424	ENSGT00940000158242	ENSGT00950000183053.D	ENSGT00390000008812.b.a	ENSGT00940000158053	ENSGT00940000164496.a.a	ENSGT00950000182978.B
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	10	ENSGT00390000011115	ENSGT00390000008551	ENSGT00940000163648.b	ENSGT00940000158729	ENSGT00390000012738	ENSGT00640000091536	ENSGT00950000182848.c.b.b.a	ENSGT00390000013601	ENSGT00940000157613	ENSGT00390000017955.c	ENSGT00940000156790	ENSGT00950000183031.A.a.a	ENSGT00950000183028.a.b.b ##16	ENSGT00390000015257	ENSGT00390000011598	ENSGT00950000182941.a.a.b.e.b ##22	ENSGT00950000183163.a.a.bb ##23	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00510000048364	ENSGT00390000004808.f ##27	ENSGT00390000010118.c.a.b	ENSGT00940000155107.a.a.b ##32	ENSGT00560000078630	ENSGT00950000183008.a.a.a.b	ENSGT00940000160424	ENSGT00940000158242	ENSGT00950000183053.D	ENSGT00390000008812.b.a	ENSGT00940000158053	ENSGT00940000164496.a.a	ENSGT00950000182978.B
European seabass	MODERN SPECIES	22	ENSDLAG00005030850	ENSDLAG00005013457	AGO4 (ENSDLAG00005013573)	CLSPN (ENSDLAG00005016583)	beta 2 (ENSDLAG00005034806)	ENSDLAG00005016605	tfap2e (ENSDLAG00005016618)	NCDN (ENSDLAG00005016625)	KIAA0319L (ENSDLAG00005016664)	ENSDLAG00005017641	ppt1 (ENSDLAG00005032737)	rragcb (ENSDLAG00005018704)	fhl3b (ENSDLAG00005018713) ##16	meaf6 (ENSDLAG00005018732)	stpg1 (ENSDLAG00005026697)	map7d1b (ENSDLAG00005018751) ##22	thrap3b (ENSDLAG00005018774) ##23	eva1bb (ENSDLAG00005002280) ##25	LSM10 (ENSDLAG00005002297)	oscp1a (ENSDLAG00005002331) ##27	ENSDLAG00005035131	zc3h12ab (ENSDLAG00005002900) ##32	smim13 (ENSDLAG00005002917)	nedd9 (ENSDLAG00005002936)	TMEM170B (ENSDLAG00005030210)	HIVEP1 (ENSDLAG00005002969)	edn1 (ENSDLAG00005002998)	si:dkeyp-92c9.2 (ENSDLAG00005030433)	myo1g (ENSDLAG00005003113)	si:ch211-195b13.1 (ENSDLAG00005033105)	eya3 (ENSDLAG00005005939)
Large yellow croaker	MODERN SPECIES	484	ago4 (ENSLCRG00005004900)	CLSPN (ENSLCRG00005004867)	ENSLCRG00005004866	cdca5 (ENSLCRG00005004865)	psmb2 (ENSLCRG00005004853)	tfap2e (ENSLCRG00005004851)	NCDN (ENSLCRG00005004849)	ENSLCRG00005004848	KIAA0319L (ENSLCRG00005002018)	cap1 (ENSLCRG00005001693)	ppt1 (ENSLCRG00005000758)	rragcb (ENSLCRG00005000695)	fhl3b (ENSLCRG00005000684) ##16	meaf6 (ENSLCRG00005000657)	stpg1 (ENSLCRG00005000640)	map7d1b (ENSLCRG00005020478) ##22	thrap3b (ENSLCRG00005020473) ##23	eva1bb (ENSLCRG00005020472) ##25	LSM10 (ENSLCRG00005020471)	oscp1a (ENSLCRG00005020381) ##27	ENSLCRG00005020362	zc3h12ab (ENSLCRG00005020357) ##32	smim13 (ENSLCRG00005020351)	nedd9 (ENSLCRG00005020348)	pip5k1aa (ENSLCRG00005020307)	psmd4a (ENSLCRG00005020248)	znf687b (ENSLCRG00005020231)	aqp10b (ENSLCRG00005020225)	hax1 (ENSLCRG00005020218)	ubap2l (ENSLCRG00005020158)	C1orf43 (ENSLCRG00005020121)
Gilthead seabream	MODERN SPECIES	17	ENSSAUG00010010430	c19h1orf109 (ENSSAUG00010010428)	ago4 (ENSSAUG00010008440)	CLSPN (ENSSAUG00010008404)	ENSSAUG00010008403	cdca5 (ENSSAUG00010008401)	psmb2 (ENSSAUG00010008400)	tfap2e (ENSSAUG00010008399)	NCDN (ENSSAUG00010008396)	KIAA0319L (ENSSAUG00010005044)	cap1 (ENSSAUG00010004535)	rragcb (ENSSAUG00010004527)	fhl3b (ENSSAUG00010004524) ##16	ppt1 (ENSSAUG00010004438)	stpg1 (ENSSAUG00010004417)	map7d1b (ENSSAUG00010004404) ##22	thrap3b (ENSSAUG00010004395) ##23	eva1bb (ENSSAUG00010004385) ##25	LSM10 (ENSSAUG00010004379)	ENSSAUG00010004375	oscp1a (ENSSAUG00010004367) ##27	zc3h12ab (ENSSAUG00010004363) ##32	smim13 (ENSSAUG00010004360)	nedd9 (ENSSAUG00010004355)	TMEM170B (ENSSAUG00010004349)	HIVEP1 (ENSSAUG00010004340)	edn1 (ENSSAUG00010004330)	si:dkeyp-92c9.2 (ENSSAUG00010004322)	myo1g (ENSSAUG00010003283)	si:ch211-195b13.1 (ENSSAUG00010027518)	eya3 (ENSSAUG00010027490)
Cod	MODERN SPECIES	14	ENSGMOG00000037177	ENSGMOG00000009525	psmb2 (ENSGMOG00000028958)	TFAP2E (ENSGMOG00000009513)	NCDN (ENSGMOG00000022584)	KIAA0319L (ENSGMOG00000012803)	ENSGMOG00000029342	ENSGMOG00000024806	ENSGMOG00000035476	ENSGMOG00000015918	ENSGMOG00000015901	rragcb (ENSGMOG00000015890)	fhl3b (ENSGMOG00000033464) ##16	meaf6 (ENSGMOG00000007357)	stpg1 (ENSGMOG00000024695)	map7d1b (ENSGMOG00000022540) ##22	ENSGMOG00000001665	thrap3b (ENSGMOG00000023763) ##23	eva1bb (ENSGMOG00000017569) ##25	LSM10 (ENSGMOG00000019832)	oscp1a (ENSGMOG00000017579) ##27	ENSGMOG00000017593	ENSGMOG00000026488	zc3h12ab (ENSGMOG00000030776) ##32	smim13 (ENSGMOG00000025692)	nedd9 (ENSGMOG00000030633)	TMEM170B (ENSGMOG00000029827)	HIVEP1 (ENSGMOG00000011398)	edn1 (ENSGMOG00000034660)	myo1g (ENSGMOG00000011448)	si:ch211-195b13.1 (ENSGMOG00000012874)
Protacanthopterygii	ANCESTRAL SPECIES	12	ENSGT00940000158669	ENSGT00940000164147.a #7	ENSGT00940000160519.a.a	ENSGT00940000154450.uc	ENSGT00530000063881.a.b #8	ENSGT01060000248564.a.b #9	ENSGT00940000158787 #10	ENSGT00940000159442 #11	ENSGT00390000017974.ob ##13	ENSGT01090000260070.C.a #12	ENSGT00390000017974.nb #13	ENSGT00950000183031.A.a.a	ENSGT00950000183028.a.b.b ##16	ENSGT00390000015257	ENSGT00390000011598	ENSGT00950000182941.a.a.b.e.b ##22	ENSGT00950000183163.a.a.bb ##23	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00510000048364	ENSGT00390000004808.f ##27	ENSGT00390000010118.c.a.b	ENSGT00940000155107.a.a.b ##32	ENSGT00560000078630	ENSGT00950000183008.a.a.a.b	ENSGT00940000160424	ENSGT00940000158242	ENSGT00950000183053.D	ENSGT00390000008812.b.a	ENSGT00940000158053	ENSGT00940000164496.a.a	ENSGT00950000182978.B
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	362		ENSGT00550000074870.y.b.b	ENSGT00910000144277.f.b.a	ENSGT00390000014274	ENSGT00940000156338.b.d	ENSGT00940000159312.d	ENSGT00940000164147.b ##7	ENSGT00940000154450.tc.a	ENSGT00940000158787.h.a #10	ENSGT01090000260070.C.b.d ##12	ENSGT00390000017974.ob.f ##13	ENSGT00950000183031.A.a.a.b	ENSGT00950000183028.a.b.b.f ##16	ENSGT00390000015257.h	ENSGT00390000011598	ENSGT00950000182941.a.a.b.e.b.e ##22	ENSGT00950000183163.a.a.bb.c ##23	ENSGT00940000154096.b.b.b.b.a.b ##25	ENSGT00940000181189	ENSGT00510000049601.j	ENSGT00390000004808.f ##27	ENSGT00390000010118.c.a.b.c	ENSGT00940000155107.a.a.b.d ##32	ENSGT00560000078630	ENSGT00950000183008.a.a.a.b.g	ENSGT00940000160424	ENSGT00940000158242.k	ENSGT00950000183053.D.g	ENSGT00990000212595	ENSGT00390000008812.b.a.c	ENSGT00940000158053.u
Salmoninae_a	ANCESTRAL SPECIES	5	ENSGT00940000159104.d.d	ENSGT00940000158587.c.a	ENSGT00390000014274	ENSGT00940000156338.b.d	ENSGT00940000159312.d	ENSGT00940000164147.b ##7	ENSGT00940000154450.tc.a	ENSGT00990000212118	ENSGT00940000158787.h.a #10	ENSGT01090000260070.C.b.d ##12	ENSGT00390000017974.ob.f ##13	ENSGT00950000183031.A.a.a.b	ENSGT00950000183028.a.b.b.f ##16	ENSGT00390000015257.h	ENSGT00390000011598	ENSGT00950000182941.a.a.b.e.b.e ##22	ENSGT00950000183163.a.a.bb.c ##23	ENSGT00940000154096.b.b.b.b.a.b ##25	ENSGT00940000181189	ENSGT00510000049601.j	ENSGT00390000004808.f ##27	ENSGT00390000010118.c.a.b.c	ENSGT00940000155107.a.a.b.d ##32	ENSGT00560000078630.h	ENSGT00950000183008.a.a.a.b.g	ENSGT00940000160424	ENSGT00940000158242.k	ENSGT00950000183053.D.g	ENSGT00990000212595	ENSGT00390000008812.b.a.c	ENSGT00940000158053.u
Salmo	ANCESTRAL SPECIES	2	ENSGT00550000074870.y.b.b	ENSGT00910000144277.f.b.a	ENSGT00390000014274	ENSGT00940000156338.b.d	ENSGT00940000159312.d	ENSGT00940000164147.b ##7	ENSGT00940000154450.tc.a	ENSGT00990000212118	ENSGT00940000158787.h.a #10	ENSGT01090000260070.C.b.d ##12	ENSGT00390000017974.ob.f ##13	ENSGT00950000183031.A.a.a.b	ENSGT00950000183028.a.b.b.f ##16	ENSGT00390000015257.h	ENSGT00390000011598	ENSGT00950000182941.a.a.b.e.b.e ##22	ENSGT00950000183163.a.a.bb.c ##23	ENSGT00940000154096.b.b.b.b.a.b ##25	ENSGT00940000181189	ENSGT00510000049601.j	ENSGT00390000004808.f ##27	ENSGT00390000010118.c.a.b.c	ENSGT00940000155107.a.a.b.d ##32	ENSGT00560000078630.h	ENSGT00950000183008.a.a.a.b.g	ENSGT00940000160424.c	ENSGT00940000158242.k	ENSGT00950000183053.D.g	ENSGT00390000008812.b.a.c	ENSGT00940000158053.u	ENSGT00940000164496.a.a.b
Atlantic salmon	MODERN SPECIES	5	PSA2 (ENSSSAG00000026601)	ENSSSAG00000020652	ccdc127 (ENSSSAG00000020001)	ENSSSAG00000018117	slc9a1b (ENSSSAG00000017046)	ENSSSAG00000009871	srsf10b (ENSSSAG00000104443)	ENSSSAG00000009809	ENSSSAG00000009802 #10	gja9b (ENSSSAG00000009793) ##12	mycbp (ENSSSAG00000115673) ##13	ENSSSAG00000101880	fhl3 (ENSSSAG00000009766) ##16	meaf6 (ENSSSAG00000009744)	stpg1 (ENSSSAG00000009729)	map7d1b (ENSSSAG00000009702) ##22	thrap3b (ENSSSAG00000009695) ##23	CA078 (ENSSSAG00000009689) ##25	ENSSSAG00000106209	oscp1a (ENSSSAG00000009407) ##27	ENSSSAG00000009391	zc3h12ab (ENSSSAG00000087542) ##32	ENSSSAG00000092580	nedd9 (ENSSSAG00000009361)	TMEM170B (ENSSSAG00000112888)	HIVEP1 (ENSSSAG00000009332)	edn1 (ENSSSAG00000119261)	ENSSSAG00000119580	si:dkeyp-92c9.2 (ENSSSAG00000103119)	myo1g (ENSSSAG00000008639)	si:ch211-195b13.1 (ENSSSAG00000008591)
River trout	MODERN SPECIES	29	ENSSTUG00000037835	sdha (ENSSTUG00000037969)	ccdc127b (ENSSTUG00000038676)	CFAP69 (ENSSTUG00000038689)	slc9a1b (ENSSTUG00000038794)	MAN1C1 (ENSSTUG00000039533)	ENSSTUG00000039655 ##7	srsf10b (ENSSTUG00000039664)	ENSSTUG00000039678	ENSSTUG00000039683 #10	mycbp (ENSSTUG00000039721) ##13	ENSSTUG00000039736	fhl3b (ENSSTUG00000039744) ##16	meaf6 (ENSSTUG00000039757)	stpg1 (ENSSTUG00000039823)	map7d1b (ENSSTUG00000039850) ##22	thrap3b (ENSSTUG00000039900) ##23	eva1bb (ENSSTUG00000039941) ##25	ENSSTUG00000039956	gstr (ENSSTUG00000039963)	oscp1a (ENSSTUG00000039983) ##27	ENSSTUG00000040003	zc3h12ab (ENSSTUG00000040008) ##32	smim13 (ENSSTUG00000040014)	nedd9 (ENSSTUG00000040022)	TMEM170B (ENSSTUG00000040049)	HIVEP1 (ENSSTUG00000040056)	edn1 (ENSSTUG00000040060)	si:dkeyp-92c9.2 (ENSSTUG00000040079)	myo1g (ENSSTUG00000040110)	si:ch211-195b13.1 (ENSSTUG00000040952)
Oncorhynchus	ANCESTRAL SPECIES	16	ENSGT00390000008818	ENSGT00940000164635	ENSGT00390000014274	ENSGT00940000156338.b.d	ENSGT00940000159312.d	ENSGT00940000164147.b ##7	ENSGT00940000154450.tc.a	ENSGT00990000212118	ENSGT00940000158787.h.a #10	ENSGT01090000260070.C.b.d ##12	ENSGT00390000017974.ob.f ##13	ENSGT00950000183031.A.a.a.b	ENSGT00950000183028.a.b.b.f ##16	ENSGT00390000015257.h	ENSGT00390000011598	ENSGT00950000182941.a.a.b.e.b.e ##22	ENSGT00950000183163.a.a.bb.c ##23	ENSGT00940000154096.b.b.b.b.a.b ##25	ENSGT00940000181189	ENSGT00510000049601.j	ENSGT00390000004808.f ##27	ENSGT00390000010118.c.a.b.c	ENSGT00940000155107.a.a.b.d ##32	ENSGT00560000078630.h	ENSGT00950000183008.a.a.a.b.g	ENSGT00940000160424.f	ENSGT00940000158242.k	ENSGT00950000183053.D.g	ENSGT00990000212595	ENSGT00390000008812.b.a.c	ENSGT00940000158053.u
Oncorhynchus_a	ANCESTRAL SPECIES	6	ENSGT00550000074870.y.b.a.b	ENSGT00910000144277.f.b.a	ENSGT00390000014274	ENSGT00940000156338.b.d	ENSGT00940000159312.d	ENSGT00940000164147.b ##7	ENSGT00940000154450.tc.a	ENSGT00990000212118	ENSGT00940000158787.h.a #10	ENSGT01090000260070.C.b.d ##12	ENSGT00390000017974.ob.f ##13	ENSGT00950000183031.A.a.a.b	ENSGT00950000183028.a.b.b.f ##16	ENSGT00390000015257.h	ENSGT00390000011598	ENSGT00950000182941.a.a.b.e.b.e ##22	ENSGT00950000183163.a.a.bb.c ##23	ENSGT00940000154096.b.b.b.b.a.b ##25	ENSGT00940000181189	ENSGT00510000049601.j	ENSGT00390000004808.f ##27	ENSGT00390000010118.c.a.b.c	ENSGT00940000155107.a.a.b.d ##32	ENSGT00560000078630.h	ENSGT00950000183008.a.a.a.b.g	ENSGT00940000160424.f	ENSGT00940000158242.k	ENSGT00950000183053.D.g	ENSGT00990000212595	ENSGT00390000008812.b.a.c	ENSGT00940000158053.u
Coho salmon	MODERN SPECIES	5	ccdc127b (ENSOKIG00005005635)	ENSOKIG00005005629	CFAP69 (ENSOKIG00005005523)	slc9a1b (ENSOKIG00005004498)	MAN1C1 (ENSOKIG00005022347)	ENSOKIG00005022330 ##7	srsf10b (ENSOKIG00005022322)	ENSOKIG00005022314	ENSOKIG00005022300 #10	gja9b (ENSOKIG00005022289) ##12	mycbp (ENSOKIG00005022266) ##13	ENSOKIG00005022253	fhl3b (ENSOKIG00005022242) ##16	meaf6 (ENSOKIG00005022194)	stpg1 (ENSOKIG00005022179)	map7d1b (ENSOKIG00005022142) ##22	thrap3b (ENSOKIG00005022125) ##23	eva1bb (ENSOKIG00005022113) ##25	ENSOKIG00005022105	gstr (ENSOKIG00005022094)	oscp1a (ENSOKIG00005022041) ##27	ENSOKIG00005022035	zc3h12ab (ENSOKIG00005022030) ##32	smim13 (ENSOKIG00005022016)	nedd9 (ENSOKIG00005022006)	TMEM170B (ENSOKIG00005021995)	HIVEP1 (ENSOKIG00005021986)	edn1 (ENSOKIG00005021979)	ENSOKIG00005021969	si:dkeyp-92c9.2 (ENSOKIG00005021966)	myo1g (ENSOKIG00005021794)
Chinook salmon	MODERN SPECIES	24	sdha (ENSOTSG00005006359)	ccdc127b (ENSOTSG00005006427)	ENSOTSG00005006428	CFAP69 (ENSOTSG00005006429)	slc9a1b (ENSOTSG00005006434)	MAN1C1 (ENSOTSG00005006586)	ENSOTSG00005006591 ##7	srsf10b (ENSOTSG00005006592)	ENSOTSG00005006595 #10	gja9b (ENSOTSG00005006597) ##12	mycbp (ENSOTSG00005006599) ##13	ENSOTSG00005006600	fhl3b (ENSOTSG00005006601) ##16	meaf6 (ENSOTSG00005006603)	stpg1 (ENSOTSG00005006604)	map7d1b (ENSOTSG00005006605) ##22	thrap3b (ENSOTSG00005006607) ##23	eva1bb (ENSOTSG00005006608) ##25	ENSOTSG00005006609	gstr (ENSOTSG00005006610)	oscp1a (ENSOTSG00005006612) ##27	ENSOTSG00005006617	zc3h12ab (ENSOTSG00005006618) ##32	ENSOTSG00005006620	smim13 (ENSOTSG00005006622)	nedd9 (ENSOTSG00005006624)	TMEM170B (ENSOTSG00005006626)	HIVEP1 (ENSOTSG00005006631)	edn1 (ENSOTSG00005006634)	si:dkeyp-92c9.2 (ENSOTSG00005006642)	myo1g (ENSOTSG00005006644)
Rainbow trout	MODERN SPECIES	24	ENSOMYG00000000281	ENSOMYG00000006505	ENSOMYG00000006584	slc9a1b (ENSOMYG00000007199)	ENSOMYG00000008042	ENSOMYG00000008120 ##7	srsf10b (ENSOMYG00000071968)	ENSOMYG00000008154	ENSOMYG00000008192 #10	gja9b (ENSOMYG00000069617) ##12	mycbp (ENSOMYG00000008266) ##13	ENSOMYG00000008221	fhl3b (ENSOMYG00000008287) ##16	meaf6 (ENSOMYG00000008396)	stpg1 (ENSOMYG00000008440)	map7d1b (ENSOMYG00000008563) ##22	thrap3b (ENSOMYG00000008733) ##23	eva1bb (ENSOMYG00000008754) ##25	ENSOMYG00000054099	ENSOMYG00000008773	ENSOMYG00000008805	oscp1a (ENSOMYG00000008917) ##27	ENSOMYG00000008955	zc3h12ab (ENSOMYG00000058082) ##32	smim13 (ENSOMYG00000008986)	nedd9 (ENSOMYG00000009014)	TMEM170B (ENSOMYG00000048814)	HIVEP1 (ENSOMYG00000009085)	ENSOMYG00000074796	edn1 (ENSOMYG00000077425)	si:dkeyp-92c9.2 (ENSOMYG00000009133)
Huchen	MODERN SPECIES	249	sdha (ENSHHUG00000028697)	ccdc127b (ENSHHUG00000029169)	ENSHHUG00000029171	CFAP69 (ENSHHUG00000029173)	slc9a1b (ENSHHUG00000029191)	MAN1C1 (ENSHHUG00000029227)	ENSHHUG00000029263 ##7	srsf10b (ENSHHUG00000029267)	ENSHHUG00000029272 #10	gja9b (ENSHHUG00000029286) ##12	mycbp (ENSHHUG00000029287) ##13	ENSHHUG00000029301	fhl3b (ENSHHUG00000029346) ##16	meaf6 (ENSHHUG00000029351)	stpg1 (ENSHHUG00000029428)	map7d1b (ENSHHUG00000029434) ##22	thrap3b (ENSHHUG00000029460) ##23	eva1bb (ENSHHUG00000029470) ##25	ENSHHUG00000029474	gstr (ENSHHUG00000029478)	oscp1a (ENSHHUG00000029498) ##27	ENSHHUG00000029507	zc3h12ab (ENSHHUG00000029509) ##32	ENSHHUG00000029512	nedd9 (ENSHHUG00000029518)	TMEM170B (ENSHHUG00000029522)	HIVEP1 (ENSHHUG00000029527)	edn1 (ENSHHUG00000029529)	ENSHHUG00000029540	si:dkeyp-92c9.2 (ENSHHUG00000029553)	ENSHHUG00000029556
Salmoninae	ANCESTRAL SPECIES	513																ENSGT00950000182941.a.a.b.e.b.f ##22	ENSGT00950000183163.a.a.bb.d ##23	ENSGT00940000154096.b.b.b.b.a.a ##25	ENSGT00390000010118.c.a.b.d	ENSGT00940000155107.a.a.b.c ##32	ENSGT00950000183008.a.a.a.b.h	ENSGT00940000158242.l	ENSGT00950000183053.D.h	ENSGT00390000008812.b.a.d	ENSGT00940000158053.v	ENSGT00940000164496.a.a.a	ENSGT00950000182978.B.f	ENSGT01090000260093.b.f.u	ENSGT01090000260093.b.e	ENSGT00940000156213.q.a	ENSGT00940000156213.q.b.b
Salmoninae_a	ANCESTRAL SPECIES	28	ENSGT00940000157893.c.b	ENSGT00390000014398	ENSGT00550000074870.y.b.a	ENSGT00910000144277.f.b.b	ENSGT00990000212686	ENSGT00940000157751	ENSGT00940000156338.b.c	ENSGT01090000260268.B	ENSGT01060000251440	ENSGT00940000154450.tc.b	ENSGT00940000158787.h.b #10	ENSGT01090000260070.C.b.c ##12	ENSGT00390000017974.ob.e ##13	ENSGT00950000183028.a.b.b.e ##16	ENSGT00390000015257.g	ENSGT00950000182941.a.a.b.e.b.f ##22	ENSGT00950000183163.a.a.bb.d ##23	ENSGT00940000154096.b.b.b.b.a.a ##25	ENSGT00390000010118.c.a.b.d	ENSGT00940000155107.a.a.b.c ##32	ENSGT00940000156772.b.d.a	ENSGT00560000078630.g	ENSGT00950000183008.a.a.a.b.h	ENSGT00940000158242.l	ENSGT00950000183053.D.h	ENSGT00390000008812.b.a.d	ENSGT00940000158053.v	ENSGT00940000164496.a.a.a	ENSGT00950000182978.B.f	ENSGT01090000260093.b.f.u	ENSGT01090000260093.b.e
Oncorhynchus	ANCESTRAL SPECIES	29	ENSGT00980000199189.c	ENSGT00530000063461.A.b.a	ENSGT00940000157893.c.b	ENSGT00390000014398	ENSGT00550000074870.y.b.a	ENSGT00910000144277.f.b.b	ENSGT00990000212686	ENSGT00940000157751	ENSGT01060000251440	ENSGT00940000154450.tc.b	ENSGT00940000158787.h.b #10	ENSGT01090000260070.C.b.c ##12	ENSGT00390000017974.ob.e ##13	ENSGT00950000183028.a.b.b.e ##16	ENSGT00390000015257.g	ENSGT00950000182941.a.a.b.e.b.f ##22	ENSGT00950000183163.a.a.bb.d ##23	ENSGT00940000154096.b.b.b.b.a.a ##25	ENSGT00390000010118.c.a.b.d	ENSGT00940000155107.a.a.b.c ##32	ENSGT00940000156772.b.d.a	ENSGT00560000078630.g	ENSGT00950000183008.a.a.a.b.h	ENSGT00940000160424.e.a	ENSGT00940000158242.l	ENSGT00950000183053.D.h	ENSGT00390000008812.b.a.d	ENSGT00940000158053.v	ENSGT00940000164496.a.a.a	ENSGT00950000182978.B.f	ENSGT01090000260093.b.f.u
Oncorhynchus_a	ANCESTRAL SPECIES	29	ENSGT00950000182901	ENSGT00940000157893.c.b	ENSGT00390000014398	ENSGT00550000074870.y.b.a.a	ENSGT00910000144277.f.b.b	ENSGT00990000212686	ENSGT00940000157751	ENSGT01010000222294.c.b.b.b.c.a.a.b.b.b	ENSGT01060000251440	ENSGT00940000154450.tc.b	ENSGT00940000158787.h.b #10	ENSGT01090000260070.C.b.c ##12	ENSGT00390000017974.ob.e ##13	ENSGT00950000183028.a.b.b.e ##16	ENSGT00390000015257.g	ENSGT00950000182941.a.a.b.e.b.f ##22	ENSGT00950000183163.a.a.bb.d ##23	ENSGT00940000154096.b.b.b.b.a.a ##25	ENSGT00390000010118.c.a.b.d	ENSGT00940000155107.a.a.b.c ##32	ENSGT00940000156772.b.d.a	ENSGT00560000078630.g	ENSGT00950000183008.a.a.a.b.h	ENSGT00940000158242.l	ENSGT00950000183053.D.h	ENSGT00390000008812.b.a.d	ENSGT00940000158053.v	ENSGT00940000164496.a.a.a	ENSGT00950000182978.B.f	ENSGT01090000260093.b.f.u	ENSGT01090000260093.b.e
Coho salmon	MODERN SPECIES	8	wdyhv1 (ENSOKIG00005011861)	PSMA2 (ENSOKIG00005011832)	SDHA (ENSOKIG00005011241)	ENSOKIG00005011197	KDM1B (ENSOKIG00005008784)	ENSOKIG00005008619	ENSOKIG00005008596	srsf10b (ENSOKIG00005008586)	ENSOKIG00005008560 #10	gja9b (ENSOKIG00005008547) ##12	mycbp (ENSOKIG00005008503) ##13	ENSOKIG00005008490	fhl3b (ENSOKIG00005008474) ##16	meaf6 (ENSOKIG00005008377)	ENSOKIG00005008358	map7d1b (ENSOKIG00005008325) ##22	thrap3b (ENSOKIG00005008296) ##23	eva1bb (ENSOKIG00005008280) ##25	ENSOKIG00005008272	ENSOKIG00005008256	zc3h12ab (ENSOKIG00005008248) ##32	ENSOKIG00005008239	smim13 (ENSOKIG00005008230)	nedd9 (ENSOKIG00005008220)	ENSOKIG00005008209	HIVEP1 (ENSOKIG00005008183)	edn1 (ENSOKIG00005008167)	si:dkeyp-92c9.2 (ENSOKIG00005008159)	myo1g (ENSOKIG00005008044)	si:ch211-195b13.1 (ENSOKIG00005007972)	eya3 (ENSOKIG00005007614)
Chinook salmon	MODERN SPECIES	168																map7d1b (ENSOTSG00005040502) ##22	thrap3b (ENSOTSG00005040504) ##23	eva1bb (ENSOTSG00005040505) ##25	ENSOTSG00005040507	ENSOTSG00005040508	zc3h12ab (ENSOTSG00005040509) ##32	ENSOTSG00005040511	smim13 (ENSOTSG00005040513)	nedd9 (ENSOTSG00005040514)	ENSOTSG00005040515
Salmo	ANCESTRAL SPECIES	2	ENSGT00940000157893.c.b	ENSGT00390000014398	ENSGT00550000074870.z	ENSGT00910000144277.f.b.b	ENSGT00990000212686	ENSGT00940000157751	ENSGT00940000156338.b.c	ENSGT01090000260268.B	ENSGT01060000251440	ENSGT00940000154450.tc.b	ENSGT00940000158787.h.b #10	ENSGT01090000260070.C.b.c ##12	ENSGT00390000017974.ob.e ##13	ENSGT00950000183028.a.b.b.e ##16	ENSGT00390000015257.g	ENSGT00950000182941.a.a.b.e.b.f ##22	ENSGT00950000183163.a.a.bb.d ##23	ENSGT00940000154096.b.b.b.b.a.a ##25	ENSGT00390000010118.c.a.b.d	ENSGT00940000155107.a.a.b.c ##32	ENSGT00940000156772.b.d.a	ENSGT00560000078630.g	ENSGT00950000183008.a.a.a.b.h	ENSGT00940000160424.d	ENSGT00940000158242.l	ENSGT00950000183053.D.h	ENSGT00390000008812.b.a.d	ENSGT00940000158053.v	ENSGT00940000164496.a.a.a	ENSGT00950000182978.B.f	ENSGT01090000260093.b.f.u
Atlantic salmon	MODERN SPECIES	19	ENSSSAG00000065020	ENSSSAG00000095756	ENSSSAG00000095425	PSA2 (ENSSSAG00000065065)	sdha (ENSSSAG00000065157)	ENSSSAG00000065391	ENSSSAG00000065417	ENSSSAG00000065537	ENSSSAG00000065544	fusip (ENSSSAG00000065557)	ENSSSAG00000065563 #10	ENSSSAG00000065568 ##12	MYCBP (ENSSSAG00000065576) ##13	fhl3b (ENSSSAG00000029717) ##16	meaf6 (ENSSSAG00000065622)	map7d1b (ENSSSAG00000065668) ##22	ENSSSAG00000120157	ENSSSAG00000107737	thrap3b (ENSSSAG00000065686) ##23	ENSSSAG00000112097	eva1bb (ENSSSAG00000065693) ##25	ENSSSAG00000097800	ENSSSAG00000082376	zc3h12ab (ENSSSAG00000065703) ##32	ENSSSAG00000065705	nedd9 (ENSSSAG00000065717)	TMEM170B (ENSSSAG00000113777)	HIVEP1 (ENSSSAG00000065742)	edn1 (ENSSSAG00000101758)	ENSSSAG00000115447	si:dkeyp-92c9.2 (ENSSSAG00000100702)
River trout	MODERN SPECIES	27	trps1 (ENSSTUG00000049546)	ENSSTUG00000049547	wdyhv1 (ENSSTUG00000049549)	ENSSTUG00000049554	sdha (ENSSTUG00000049562)	ENSSTUG00000049646	KDM1B (ENSSTUG00000049671)	ENSSTUG00000049820	ENSSTUG00000049824	srsf10b (ENSSTUG00000049827)	ENSSTUG00000049828 #10	gja9b (ENSSTUG00000049829) ##12	mycbp (ENSSTUG00000049830) ##13	fhl3b (ENSSTUG00000049833) ##16	meaf6 (ENSSTUG00000049837)	map7d1b (ENSSTUG00000049845) ##22	thrap3b (ENSSTUG00000049859) ##23	eva1bb (ENSSTUG00000049862) ##25	ENSSTUG00000049864	ENSSTUG00000049865	zc3h12ab (ENSSTUG00000049867) ##32	ENSSTUG00000049870	ENSSTUG00000049873	smim13 (ENSSTUG00000049875)	nedd9 (ENSSTUG00000049876)	TMEM170B (ENSSTUG00000049879)	ENSSTUG00000049882	ENSSTUG00000049883	HIVEP1 (ENSSTUG00000049885)	edn1 (ENSSTUG00000049892)	ENSSTUG00000049896
Northern pike	MODERN SPECIES	9	KDM1B (ENSELUG00000008094)	CFAP69 (ENSELUG00000007995)	slc9a1b (ENSELUG00000007970)	ENSELUG00000034496	ENSELUG00000000287	ENSELUG00000007901 ##7	srsf10b (ENSELUG00000007888)	ENSELUG00000029192	akirin1 (ENSELUG00000007858) #10	gja9b (ENSELUG00000007830) ##12	mycbp (ENSELUG00000031004) ##13	ENSELUG00000007786	fhl3b (ENSELUG00000007755) ##16	meaf6 (ENSELUG00000028481)	stpg1 (ENSELUG00000007684)	map7d1b (ENSELUG00000007639) ##22	thrap3b (ENSELUG00000007499) ##23	eva1bb (ENSELUG00000030974) ##25	LSM10 (ENSELUG00000007452)	oscp1a (ENSELUG00000007413) ##27	ENSELUG00000007378	ENSELUG00000029369	zc3h12ab (ENSELUG00000007368) ##32	smim13 (ENSELUG00000030404)	nedd9 (ENSELUG00000007314)	TMEM170B (ENSELUG00000007252)	HIVEP1 (ENSELUG00000007223)	edn1 (ENSELUG00000007183)	rbm24a (ENSELUG00000007163)	cap2 (ENSELUG00000007130)	ENSELUG00000027226
Osteoglossiformes	ANCESTRAL SPECIES	1										ENSGT00990000203527.b	ENSGT00950000182894.D	ENSGT00940000156338.b	ENSGT00390000017974.ob ##13	ENSGT00950000183028.a.b.b ##16	ENSGT00390000011598	ENSGT00950000182941.a.a.b.e.b ##22	ENSGT00950000183163.a.a.bb ##23	ENSGT00390000010118.c.a.b	ENSGT00390000004808.f ##27	ENSGT00510000048364	ENSGT00560000078630	ENSGT00950000183008.a.a.a.b	ENSGT00940000160424	ENSGT00940000158242	ENSGT00950000183053.D.b	ENSGT00390000008812.b.a	ENSGT00940000158053.r	ENSGT01100000263475.f.b.b	ENSGT00940000173852	ENSGT00940000164496.a.a.i	ENSGT00950000182978.B
P. kingsleyae	MODERN SPECIES	13	dtnbp1b (ENSPKIG00000002974)	mylipa (ENSPKIG00000002991)	gmpr (ENSPKIG00000003016)	atxn1a (ENSPKIG00000003054)	ENSPKIG00000003088	lim2.4 (ENSPKIG00000003113)	USF2 (ENSPKIG00000003150)	ENSPKIG00000003201	tekt2 (ENSPKIG00000003234)	slc9a1b (ENSPKIG00000003284)	srsf10b (ENSPKIG00000003304)	ENSPKIG00000003346 #10	mycbp (ENSPKIG00000003459) ##13	fhl3b (ENSPKIG00000003480) ##16	stpg1 (ENSPKIG00000003521)	map7d1b (ENSPKIG00000003598) ##22	thrap3b (ENSPKIG00000003697) ##23	LSM10 (ENSPKIG00000003728)	smim13 (ENSPKIG00000003755)	nedd9 (ENSPKIG00000003771)	TMEM170B (ENSPKIG00000003794)	HIVEP1 (ENSPKIG00000003860)	edn1 (ENSPKIG00000003920)	si:dkeyp-92c9.2 (ENSPKIG00000003949)	myo1g (ENSPKIG00000003975)	ENSPKIG00000004118	ENSPKIG00000004298
Osteoglossocephalai	ANCESTRAL SPECIES																	ENSGT00950000182941.a.a.b.f ##22
Clupeocephala	ANCESTRAL SPECIES																	ENSGT00950000182941.a.a.b.f ##22
Euteleosteomorpha	ANCESTRAL SPECIES																	ENSGT00950000182941.a.a.b.f ##22
Protacanthopterygii	ANCESTRAL SPECIES																	ENSGT00950000182941.a.a.b.f ##22
Salmoninae	ANCESTRAL SPECIES																	ENSGT00950000182941.a.a.b.f ##22
Salmoninae_a	ANCESTRAL SPECIES																	ENSGT00950000182941.a.a.b.f ##22
Oncorhynchus	ANCESTRAL SPECIES																	ENSGT00950000182941.a.a.b.f ##22
Rainbow trout	MODERN SPECIES	25	ENSOMYG00000049293	sh3bgrl2 (ENSOMYG00000048234)	ENSOMYG00000066355	ENSOMYG00000069660	eya4 (ENSOMYG00000063960)	tcf21 (ENSOMYG00000075719)	ENSOMYG00000049685	ENSOMYG00000039735	ENSOMYG00000053078	ENSOMYG00000062827	aldh8a1 (ENSOMYG00000025589)	ENSOMYG00000065177	myb (ENSOMYG00000061659)	mtfr2 (ENSOMYG00000028410)	ENSOMYG00000063382	ENSOMYG00000062619 ##22	ENSOMYG00000065195	ENSOMYG00000058349	DDX1 (ENSOMYG00000031111)	nbas (ENSOMYG00000055190)	ENSOMYG00000049178	ENSOMYG00000065531	ENSOMYG00000053131	lratd1 (ENSOMYG00000039116)	sec63 (ENSOMYG00000068521)	ENSOMYG00000061905	ENSOMYG00000077259	ENSOMYG00000026864	ENSOMYG00000071150	ENSOMYG00000031152	ENSOMYG00000067714
Spotted gar	MODERN SPECIES	672	ldlrap1b (ENSLOCG00000002632)	maco1b (ENSLOCG00000002652)	rhd (ENSLOCG00000002671)	tmem50a (ENSLOCG00000002702)	mgst3b (ENSLOCG00000002714)	syf2 (ENSLOCG00000002728)	runx3 (ENSLOCG00000002744)	clic4 (ENSLOCG00000002762)	SRRM1 (ENSLOCG00000002785)	rcan3 (ENSLOCG00000002797)	nipal3 (ENSLOCG00000002817)	ENSLOCG00000002832	ENSLOCG00000002868	stpg1 (ENSLOCG00000002882)	MAP3K6 (ENSLOCG00000002899) #21	map7d1a (ENSLOCG00000002929) #22	ENSLOCG00000002939	sh3d21 (ENSLOCG00000002978) #24	cited4b (ENSLOCG00000018276)	ENSLOCG00000002995	SCMH1 (ENSLOCG00000003009)	foxo6b (ENSLOCG00000003028)	med18 (ENSLOCG00000003042)	ppp1r8a (ENSLOCG00000003050)	THEMIS2 (ENSLOCG00000003069)	rpa2 (ENSLOCG00000003082)	eva1bb (ENSLOCG00000003102) ##25	STK40 (ENSLOCG00000003116) #26	LSM10 (ENSLOCG00000018277)	oscp1a (ENSLOCG00000003127) #27	mrps15 (ENSLOCG00000003165) #29
Reedfish	MODERN SPECIES	5	pigv (ENSECRG00000018504)	ARID1A (ENSECRG00000018433)	tbxta (ENSECRG00000018388)	gpn2 (ENSECRG00000018368)	gpatch3 (ENSECRG00000018324)	nudc (ENSECRG00000018283)	nr0b2a (ENSECRG00000018264)	ENSECRG00000018244	tpbga (ENSECRG00000018227)	tmem222a (ENSECRG00000018153)	wdtc1 (ENSECRG00000018055)	ENSECRG00000018025	ENSECRG00000017999	ENSECRG00000017973	ENSECRG00000017909 #21	map7d1a (ENSECRG00000017823) #22	ENSECRG00000017791	ENSECRG00000017775	THRAP3 (ENSECRG00000017732) #23	sh3d21 (ENSECRG00000017668) #24	ENSECRG00000017616 #30	mrps15 (ENSECRG00000017586) #29	ENSECRG00000017570	ENSECRG00000017548	oscp1a (ENSECRG00000017499) #27	LSM10 (ENSECRG00000017463)	STK40 (ENSECRG00000017419) #26	eva1ba (ENSECRG00000017402) #25	GRIK3 (ENSECRG00000017341) #31	ENSECRG00000017297 #31	zc3h12ab (ENSECRG00000017281) #32
Sarcopterygii	ANCESTRAL SPECIES	53	ENSGT00390000003465.b.a	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00940000164972	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00990000203803	ENSGT00390000015257	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18
Tetrapoda	ANCESTRAL SPECIES	60	ENSGT00390000003465.b.a	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00940000164972	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00940000153981.B	ENSGT00940000160262	ENSGT00940000161202.b	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00990000203803	ENSGT00390000015257
Amniota	ANCESTRAL SPECIES	39	ENSGT00940000155018	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00940000164972	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00940000153981.B	ENSGT00940000160262	ENSGT00940000161202.b	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257	ENSGT00940000156553 #20
Sauria	ANCESTRAL SPECIES	23	ENSGT00940000155018	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00940000164972	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00940000161202.b	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18
Archelosauria	ANCESTRAL SPECIES	25	ENSGT00940000155018	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00940000164972	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00940000161202.b	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18
Archosauria	ANCESTRAL SPECIES	22	ENSGT00940000165614	ENSGT00940000155018	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18	ENSGT00940000158871 #17	ENSGT00390000008551
Aves	ANCESTRAL SPECIES	28	ENSGT00940000165614	ENSGT00940000155018	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18	ENSGT00940000158871 #17	ENSGT00390000008551
Neognathae	ANCESTRAL SPECIES	26	ENSGT00940000165614	ENSGT00940000155018	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18	ENSGT00940000158871 #17	ENSGT00390000008551
Galloanserae	ANCESTRAL SPECIES	25	ENSGT00940000159550	ENSGT00940000165614	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18	ENSGT00940000158871 #17	ENSGT00390000008551
Phasianidae	ANCESTRAL SPECIES	24	ENSGT00940000159550	ENSGT00940000165614	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18	ENSGT00940000158871 #17	ENSGT00390000008551
Phasianidae_b	ANCESTRAL SPECIES	23	ENSGT00940000156221	ENSGT00940000159550	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18	ENSGT00940000158871 #17	ENSGT00390000008551
Chicken	MODERN SPECIES	15	ZMYM4 (ENSGALG00010013880)	IFI27L2 (ENSGALG00010013837)	KIAA0319L (ENSGALG00010013772)	NCDN (ENSGALG00010013719)	TFAP2E (ENSGALG00010013698)	PSMB2 (ENSGALG00010015046)	C1orf216 (ENSGALG00010015032)	CLSPN (ENSGALG00010015027)	AGO4 (ENSGALG00010015009)	AGO1 (ENSGALG00010014990)	AGO3 (ENSGALG00010014949)	TEKT2 (ENSGALG00010014905)	ADPRHL2 (ENSGALG00010018267)	COL8A2 (ENSGALG00010014897)	TRAPPC3 (ENSGALG00010014859)	MAP7D1 (ENSGALG00010014806) #22	THRAP3 (ENSGALG00010014795) #23	EVA1B (ENSGALG00010014780) ##25	STK40 (ENSGALG00010014762) #26	LSM10 (ENSGALG00010014745)	OSCP1 (ENSGALG00010018258) #27	MRPS15 (ENSGALG00010014729) #29	CSF3R (ENSGALG00010014690) #30	GRIK3 (ENSGALG00010016578) #31	ZC3H12A (ENSGALG00010016458) #32	MEAF6 (ENSGALG00010016677)	SNIP1 (ENSGALG00010016613) #20	DNALI1 (ENSGALG00010016611) #19	GNL2 (ENSGALG00010016600) #18	RSPO1 (ENSGALG00010013311) #17	C1orf109 (ENSGALG00010013103)
Turkey	MODERN SPECIES	17	DNALI1 (ENSMGAG00000003325) #19	ENSMGAG00000003267 #18	RSPO1 (ENSMGAG00000003245) #17	ENSMGAG00000003330 #20	ENSMGAG00000003361	ENSMGAG00000003371 #32	ENSMGAG00000003413 #31	CSF3R (ENSMGAG00000003526) #30	ENSMGAG00000003573 #27	ENSMGAG00000003562 #29	ENSMGAG00000015707	ENSMGAG00000003614 #26	ENSMGAG00000018617 ##25	ENSMGAG00000003640 #23	ENSMGAG00000021587 #23	ENSMGAG00000003386 #22	ENSMGAG00000003713	ENSMGAG00000021309	ENSMGAG00000003732	TEKT2 (ENSMGAG00000003750)	AGO1 (ENSMGAG00000003822)	ENSMGAG00000019105	ENSMGAG00000003851	ENSMGAG00000018964	ENSMGAG00000003920	ENSMGAG00000003986	ENSMGAG00000004014	ENSMGAG00000004027	ENSMGAG00000004047	ZMYM4 (ENSMGAG00000004092)	ENSMGAG00000017895
Japanese quail	MODERN SPECIES	15	ENSCJPG00005017090	KIAA0319L (ENSCJPG00005017087)	NCDN (ENSCJPG00005017086)	ENSCJPG00005017085	ENSCJPG00005017083	PSMB2 (ENSCJPG00005017082)	C1orf216 (ENSCJPG00005017080)	CLSPN (ENSCJPG00005017068)	AGO4 (ENSCJPG00005017064)	AGO1 (ENSCJPG00005017061)	AGO3 (ENSCJPG00005017055)	TEKT2 (ENSCJPG00005017051)	ADPRS (ENSCJPG00005017049)	COL8A2 (ENSCJPG00005017048)	TRAPPC3 (ENSCJPG00005017040)	MAP7D1 (ENSCJPG00005017036) #22	THRAP3 (ENSCJPG00005017025) #23	EVA1B (ENSCJPG00005017024) ##25	STK40 (ENSCJPG00005017020) #26	LSM10 (ENSCJPG00005017018)	OSCP1 (ENSCJPG00005016941) #27	CSF3R (ENSCJPG00005016940) #30	GRIK3 (ENSCJPG00005016444) #31	ZC3H12A (ENSCJPG00005016443) #32	MEAF6 (ENSCJPG00005016442)	SNIP1 (ENSCJPG00005016441) #20	DNALI1 (ENSCJPG00005016440) #19	GNL2 (ENSCJPG00005016439) #18	RSPO1 (ENSCJPG00005016438) #17	C1orf109 (ENSCJPG00005016437)	MANEAL (ENSCJPG00005016436) #37
Anatidae	DUPLICATION
Anatidae	ANCESTRAL SPECIES																	ENSGT00950000182941.a.a.b.a #22
Duck	MODERN SPECIES	980																ENSAPLG00000016464 #22
Anatidae	ANCESTRAL SPECIES	21	ENSGT00940000159550	ENSGT01030000238234	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00390000004808 #27	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18	ENSGT00940000158871 #17	ENSGT00390000008551	ENSGT00390000011115	ENSGT00940000164552
Pink-footed goose	MODERN SPECIES	73	TMEM35B (ENSABRG00000020823)	ENSABRG00000020825	ZMYM4 (ENSABRG00000020832)	ENSABRG00000020838	KIAA0319L (ENSABRG00000020845)	NCDN (ENSABRG00000020848)	TFAP2E (ENSABRG00000020852)	PSMB2 (ENSABRG00000020856)	C1orf216 (ENSABRG00000020859)	CLSPN (ENSABRG00000020864)	AGO3 (ENSABRG00000020889)	TEKT2 (ENSABRG00000020906)	ADPRS (ENSABRG00000020915)	COL8A2 (ENSABRG00000020919)	TRAPPC3 (ENSABRG00000020920)	MAP7D1 (ENSABRG00000020951) #22	THRAP3 (ENSABRG00000021040) #23	STK40 (ENSABRG00000021045) #26	OSCP1 (ENSABRG00000021050) #27	CSF3R (ENSABRG00000021053) #30	GRIK3 (ENSABRG00000021061) #31	ZC3H12A (ENSABRG00000021065) #32	MEAF6 (ENSABRG00000021072)	SNIP1 (ENSABRG00000021080) #20	DNALI1 (ENSABRG00000021085) #19	GNL2 (ENSABRG00000021088) #18	RSPO1 (ENSABRG00000021097) #17	C1orf109 (ENSABRG00000021103)	CDCA8 (ENSABRG00000021106)	ENSABRG00000021121	MANEAL (ENSABRG00000021131) #37
Duck	MODERN SPECIES	2794																ENSAPLG00000019608 #22
Neognathae_b	ANCESTRAL SPECIES	26	ENSGT00940000165614	ENSGT00940000155018	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18	ENSGT00940000158871 #17	ENSGT00390000008551
Passeriformes	ANCESTRAL SPECIES	23	ENSGT00940000165614	ENSGT00940000155018	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18	ENSGT00940000158871 #17	ENSGT00390000008551
Great tit	MODERN SPECIES	15	ENSPMJG00000006658	KIAA0319L (ENSPMJG00000006673)	NCDN (ENSPMJG00000006675)	TFAP2E (ENSPMJG00000006676)	PSMB2 (ENSPMJG00000006678)	C1orf216 (ENSPMJG00000006680)	CLSPN (ENSPMJG00000006682)	AGO4 (ENSPMJG00000006688)	ENSPMJG00000006707	ENSPMJG00000006708	AGO3 (ENSPMJG00000006709)	TEKT2 (ENSPMJG00000006712)	ADPRS (ENSPMJG00000006718)	COL8A2 (ENSPMJG00000006720)	TRAPPC3 (ENSPMJG00000006723)	MAP7D1 (ENSPMJG00000006724) #22	THRAP3 (ENSPMJG00000006749) #23	EVA1B (ENSPMJG00000006755) ##25	STK40 (ENSPMJG00000006758) #26	LSM10 (ENSPMJG00000006760)	OSCP1 (ENSPMJG00000006764) #27	MRPS15 (ENSPMJG00000006766) #29	CSF3R (ENSPMJG00000006768) #30	GRIK3 (ENSPMJG00000006831) #31	ZC3H12A (ENSPMJG00000006834) #32	MEAF6 (ENSPMJG00000006841)	SNIP1 (ENSPMJG00000006845) #20	DNALI1 (ENSPMJG00000006847) #19	ENSPMJG00000006852	RSPO1 (ENSPMJG00000006854) #17	ENSPMJG00000006855
Passeriformes_d	ANCESTRAL SPECIES	23	ENSGT00940000165614	ENSGT00940000155018	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18	ENSGT00940000158871 #17	ENSGT00390000008551
Passeriformes_g	ANCESTRAL SPECIES	22	ENSGT00940000159550	ENSGT00940000165614	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18	ENSGT00940000158871 #17	ENSGT00940000164552.f.a
Passeroidea	ANCESTRAL SPECIES	22	ENSGT00940000159550	ENSGT00940000165614	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18	ENSGT00940000158871 #17	ENSGT00390000008551
Zebra finch	MODERN SPECIES	16	ZMYM4 (ENSTGUG00000001709)	KIAA0319L (ENSTGUG00000001687)	NCDN (ENSTGUG00000001681)	TFAP2E (ENSTGUG00000001672)	PSMB2 (ENSTGUG00000001663)	C1orf216 (ENSTGUG00000029067)	CLSPN (ENSTGUG00000001651)	AGO4 (ENSTGUG00000024123)	ENSTGUG00000021564	AGO1 (ENSTGUG00000001631)	AGO3 (ENSTGUG00000014986)	TEKT2 (ENSTGUG00000001625)	ADPRS (ENSTGUG00000001622)	COL8A2 (ENSTGUG00000001619)	TRAPPC3 (ENSTGUG00000001616)	MAP7D1 (ENSTGUG00000020289) #22	THRAP3 (ENSTGUG00000001606) #23	EVA1B (ENSTGUG00000025865) ##25	STK40 (ENSTGUG00000001603) #26	LSM10 (ENSTGUG00000022736)	OSCP1 (ENSTGUG00000001590) #27	MRPS15 (ENSTGUG00000024895) #29	CSF3R (ENSTGUG00000001588) #30	GRIK3 (ENSTGUG00000001569) #31	ZC3H12A (ENSTGUG00000026131) #32	MEAF6 (ENSTGUG00000001560)	SNIP1 (ENSTGUG00000001544) #20	DNALI1 (ENSTGUG00000001557) #19	GNL2 (ENSTGUG00000001547) #18	RSPO1 (ENSTGUG00000001536) #17	ENSTGUG00000019470
Common canary	MODERN SPECIES	49	KIAA0319L (ENSSCAG00000015436)	NCDN (ENSSCAG00000015432)	TFAP2E (ENSSCAG00000015421)	PSMB2 (ENSSCAG00000015418)	C1orf216 (ENSSCAG00000015416)	CLSPN (ENSSCAG00000015411)	ENSSCAG00000015409	ENSSCAG00000015404	ENSSCAG00000015403	ENSSCAG00000015399	AGO3 (ENSSCAG00000015396)	TEKT2 (ENSSCAG00000015389)	ADPRS (ENSSCAG00000015386)	COL8A2 (ENSSCAG00000015381)	TRAPPC3 (ENSSCAG00000015380)	MAP7D1 (ENSSCAG00000015376) #22	THRAP3 (ENSSCAG00000015371) #23	EVA1B (ENSSCAG00000015366) ##25	STK40 (ENSSCAG00000015361) #26	OSCP1 (ENSSCAG00000015356) #27	MRPS15 (ENSSCAG00000015349) #29	CSF3R (ENSSCAG00000015342) #30	ENSSCAG00000015339	ENSSCAG00000015337	GRIK3 (ENSSCAG00000015246) #31	ZC3H12A (ENSSCAG00000015215) #32	MEAF6 (ENSSCAG00000015214)	DNALI1 (ENSSCAG00000015210) #19	GNL2 (ENSSCAG00000015204) #18	RSPO1 (ENSSCAG00000015200) #17	ENSSCAG00000015197
Flycatcher	MODERN SPECIES	15	SFPQ (ENSFALG00000000731)	ZMYM4 (ENSFALG00000000734)	ENSFALG00000024613	KIAA0319L (ENSFALG00000000740)	NCDN (ENSFALG00000000742)	TFAP2E (ENSFALG00000027366)	PSMB2 (ENSFALG00000024999)	C1orf216 (ENSFALG00000014273)	CLSPN (ENSFALG00000000773)	AGO1 (ENSFALG00000000790)	ADPRS (ENSFALG00000028684)	ENSFALG00000023448	TRAPPC3 (ENSFALG00000000832)	ENSFALG00000000835	ENSFALG00000000824	MAP7D1 (ENSFALG00000000837) #22	THRAP3 (ENSFALG00000000840) #23	ENSFALG00000028751 ##25	STK40 (ENSFALG00000000846) #26	LSM10 (ENSFALG00000028374)	OSCP1 (ENSFALG00000000855) #27	MRPS15 (ENSFALG00000000866) #29	CSF3R (ENSFALG00000000875) #30	GRIK3 (ENSFALG00000000886) #31	ZC3H12A (ENSFALG00000000890) #32	MEAF6 (ENSFALG00000000895)	SNIP1 (ENSFALG00000000898) #20	DNALI1 (ENSFALG00000000901) #19	GNL2 (ENSFALG00000000909) #18	RSPO1 (ENSFALG00000029044) #17	ENSFALG00000023058
Neognathae_c	ANCESTRAL SPECIES	31	ENSGT01050000245043	ENSGT01080000259115	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18	ENSGT00940000158871 #17	ENSGT00390000008551
Golden eagle	MODERN SPECIES	7	ZMYM4 (ENSACCG00020007551)	ENSACCG00020007509	ENSACCG00020007498	KIAA0319L (ENSACCG00020007466)	NCDN (ENSACCG00020007449)	TFAP2E (ENSACCG00020007424)	PSMB2 (ENSACCG00020007392)	CLSPN (ENSACCG00020007318)	AGO4 (ENSACCG00020007268)	AGO1 (ENSACCG00020007246)	AGO3 (ENSACCG00020007221)	TEKT2 (ENSACCG00020007198)	ADPRS (ENSACCG00020007187)	COL8A2 (ENSACCG00020007180)	TRAPPC3 (ENSACCG00020007167)	MAP7D1 (ENSACCG00020007137) #22	THRAP3 (ENSACCG00020007064) #23	EVA1B (ENSACCG00020007041) ##25	STK40 (ENSACCG00020007023) #26	LSM10 (ENSACCG00020007012)	OSCP1 (ENSACCG00020016654) #27	MRPS15 (ENSACCG00020016648) #29	CSF3R (ENSACCG00020016644) #30	GRIK3 (ENSACCG00020016533) #31	ZC3H12A (ENSACCG00020016403) #32	MEAF6 (ENSACCG00020016352)	SNIP1 (ENSACCG00020016338) #20	DNALI1 (ENSACCG00020016330) #19	GNL2 (ENSACCG00020016319) #18	RSPO1 (ENSACCG00020016309) #17	ENSACCG00020016301
Kakapo	MODERN SPECIES	6	ENSSHBG00005010728	ENSSHBG00005010707	KIAA0319L (ENSSHBG00005005834)	NCDN (ENSSHBG00005005408)	TFAP2E (ENSSHBG00005005377)	PSMB2 (ENSSHBG00005000735)	C1orf216 (ENSSHBG00005000717)	CLSPN (ENSSHBG00005000707)	AGO4 (ENSSHBG00005019185)	AGO1 (ENSSHBG00005017278)	AGO3 (ENSSHBG00005017167)	TEKT2 (ENSSHBG00005017157)	ADPRS (ENSSHBG00005017149)	COL8A2 (ENSSHBG00005017145)	TRAPPC3 (ENSSHBG00005017143)	MAP7D1 (ENSSHBG00005017141) #22	THRAP3 (ENSSHBG00005017133) #23	EVA1B (ENSSHBG00005017124) ##25	STK40 (ENSSHBG00005017111) #26	LSM10 (ENSSHBG00005017106)	OSCP1 (ENSSHBG00005017104) #27	MRPS15 (ENSSHBG00005017100) #29	CSF3R (ENSSHBG00005017091) #30	GRIK3 (ENSSHBG00005017083) #31	ENSSHBG00005017076 #32	MEAF6 (ENSSHBG00005017069)	SNIP1 (ENSSHBG00005017055) #20	DNALI1 (ENSSHBG00005017051) #19	GNL2 (ENSSHBG00005017044) #18	RSPO1 (ENSSHBG00005017035) #17	C1orf109 (ENSSHBG00005017031)
Australian saltwater crocodile	MODERN SPECIES	58															ENSCPRG00005002419	MAP7D1 (ENSCPRG00005002420) #22	THRAP3 (ENSCPRG00005002448) #23	STK40 (ENSCPRG00005002499) #26	LSM10 (ENSCPRG00005002502)	OSCP1 (ENSCPRG00005002504) #27	MRPS15 (ENSCPRG00005002507) #29	ENSCPRG00005002521 #30	GRIK3 (ENSCPRG00005002528) #31	ZC3H12A (ENSCPRG00005002535) #32	MEAF6 (ENSCPRG00005002540)	SNIP1 (ENSCPRG00005002543) #20	DNALI1 (ENSCPRG00005002547) #19	GNL2 (ENSCPRG00005002554) #18	RSPO1 (ENSCPRG00005002591) #17	CDCA8 (ENSCPRG00005002599)	C1orf109 (ENSCPRG00005002620)
Cryptodira	ANCESTRAL SPECIES	31	ENSGT00940000155018	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00940000164972	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00940000161202.b	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18
Testudinoidea	ANCESTRAL SPECIES	27	ENSGT00940000155018	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00940000164972	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00990000210150	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00940000161202.b	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18
Emydidae	ANCESTRAL SPECIES	39	ENSGT00940000155018	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00940000164972	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00990000210150	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00940000161202.b	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18
painted turtle	MODERN SPECIES	6	ENSCPBG00000018635	KIAA0319L (ENSCPBG00000018629)	NCDN (ENSCPBG00000018626)	TFAP2E (ENSCPBG00000018622)	PSMB2 (ENSCPBG00000018619)	C1orf216 (ENSCPBG00000018616)	CLSPN (ENSCPBG00000018609)	AGO4 (ENSCPBG00000018602)	AGO1 (ENSCPBG00000018594)	AGO3 (ENSCPBG00000018583)	TEKT2 (ENSCPBG00000018573)	ADPRS (ENSCPBG00000018548)	COL8A2 (ENSCPBG00000018546)	TRAPPC3 (ENSCPBG00000018543)	ENSCPBG00000018540	MAP7D1 (ENSCPBG00000018535) #22	THRAP3 (ENSCPBG00000018530) #23	EVA1B (ENSCPBG00000018526) ##25	STK40 (ENSCPBG00000018522) #26	OSCP1 (ENSCPBG00000018516) #27	ENSCPBG00000018513	MRPS15 (ENSCPBG00000018508) #29	ENSCPBG00000018503 #30	GRIK3 (ENSCPBG00000018496) #31	ZC3H12A (ENSCPBG00000018492) #32	MEAF6 (ENSCPBG00000018490)	SNIP1 (ENSCPBG00000018488) #20	DNALI1 (ENSCPBG00000018486) #19	GNL2 (ENSCPBG00000018483) #18	RSPO1 (ENSCPBG00000018476) #17	C1orf109 (ENSCPBG00000018470)
Three-toed box turtle	MODERN SPECIES	111	KIAA0319L (ENSTMTG00000006239)	NCDN (ENSTMTG00000006282)	TFAP2E (ENSTMTG00000006307)	PSMB2 (ENSTMTG00000006329)	C1orf216 (ENSTMTG00000006346)	CLSPN (ENSTMTG00000006379)	AGO4 (ENSTMTG00000006524)	AGO1 (ENSTMTG00000006686)	AGO3 (ENSTMTG00000008722)	TEKT2 (ENSTMTG00000009035)	ADPRS (ENSTMTG00000009056)	ENSTMTG00000009071	ENSTMTG00000009081	TRAPPC3 (ENSTMTG00000009095)	ENSTMTG00000009113	MAP7D1 (ENSTMTG00000009142) #22	THRAP3 (ENSTMTG00000009191) #23	ENSTMTG00000009216	EVA1B (ENSTMTG00000009227) ##25	STK40 (ENSTMTG00000009239) #26	LSM10 (ENSTMTG00000009262)	OSCP1 (ENSTMTG00000009274) #27	ENSTMTG00000009300	MRPS15 (ENSTMTG00000009309) #29	ENSTMTG00000009333 #30	GRIK3 (ENSTMTG00000009387) #31	ZC3H12A (ENSTMTG00000009698) #32	MEAF6 (ENSTMTG00000009714)	SNIP1 (ENSTMTG00000009743) #20	DNALI1 (ENSTMTG00000009756) #19	GNL2 (ENSTMTG00000009773) #18
Testudinidae	ANCESTRAL SPECIES	4	ENSGT00940000155018	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00940000164972	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00940000161202.b	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18	ENSGT00940000158871 #17
Abingdon island giant tortoise	MODERN SPECIES	2577	KIAA0319L (ENSCABG00000007240)	NCDN (ENSCABG00000007342)	TFAP2E (ENSCABG00000007343)	PSMB2 (ENSCABG00000007345)	C1orf216 (ENSCABG00000007347)	CLSPN (ENSCABG00000007352)	AGO4 (ENSCABG00000007476)	AGO1 (ENSCABG00000013412)	ENSCABG00000015096	AGO3 (ENSCABG00000015112)	TEKT2 (ENSCABG00000015179)	ADPRS (ENSCABG00000015185)	COL8A2 (ENSCABG00000015187)	TRAPPC3 (ENSCABG00000015191)	ENSCABG00000015195	MAP7D1 (ENSCABG00000015201) #22	THRAP3 (ENSCABG00000015214) #23	EVA1B (ENSCABG00000015223) ##25	STK40 (ENSCABG00000015228) #26	LSM10 (ENSCABG00000015234)	OSCP1 (ENSCABG00000015236) #27	ENSCABG00000015238	MRPS15 (ENSCABG00000015239) #29	CSF3R (ENSCABG00000015240) #30
Goode s thornscrub tortoise	MODERN SPECIES	12	KIAA0319L (ENSGEVG00005006206)	NCDN (ENSGEVG00005006175)	TFAP2E (ENSGEVG00005006139)	PSMB2 (ENSGEVG00005006128)	C1orf216 (ENSGEVG00005006043)	CLSPN (ENSGEVG00005005870)	AGO4 (ENSGEVG00005005791)	AGO1 (ENSGEVG00005005703)	AGO3 (ENSGEVG00005005639)	TEKT2 (ENSGEVG00005005594)	ADPRS (ENSGEVG00005005570)	ENSGEVG00005005550	ENSGEVG00005005522	TRAPPC3 (ENSGEVG00005005507)	ENSGEVG00005005474	MAP7D1 (ENSGEVG00005005319) #22	THRAP3 (ENSGEVG00005005253) #23	ENSGEVG00005005227	EVA1B (ENSGEVG00005005210) ##25	STK40 (ENSGEVG00005005164) #26	LSM10 (ENSGEVG00005005145)	OSCP1 (ENSGEVG00005005115) #27	ENSGEVG00005005085	MRPS15 (ENSGEVG00005005058) #29	CSF3R (ENSGEVG00005005019) #30	GRIK3 (ENSGEVG00005004662) #31	ZC3H12A (ENSGEVG00005004569) #32	MEAF6 (ENSGEVG00005004388)	SNIP1 (ENSGEVG00005004359) #20	DNALI1 (ENSGEVG00005004338) #19	GNL2 (ENSGEVG00005004309) #18
Lepidosauria	ANCESTRAL SPECIES	18	ENSGT01050000245043	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00940000164972	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000160627 #24	ENSGT00990000210150	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00940000166129 #28	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257	ENSGT00940000156553 #20	ENSGT00390000003012 #19
tuatara	DUPLICATION
tuatara	MODERN SPECIES	1024												ENSSPUG00000000939	TRAPPC3 (ENSSPUG00000000968)	ENSSPUG00000000984	ENSSPUG00000001000 #22	ENSSPUG00000001075 #22	THRAP3 (ENSSPUG00000001120) #23	EVA1B (ENSSPUG00000001155) ##25	STK40 (ENSSPUG00000001174) #26	OSCP1 (ENSSPUG00000001212) #27	ENSSPUG00000001378	MRPS15 (ENSSPUG00000001388) #29	ENSSPUG00000001395 #30	ENSSPUG00000001404 #30	ENSSPUG00000001413
tuatara	MODERN SPECIES	1024													ENSSPUG00000000939	TRAPPC3 (ENSSPUG00000000968)	ENSSPUG00000000984	ENSSPUG00000001000 #22	ENSSPUG00000001075 #22	THRAP3 (ENSSPUG00000001120) #23	EVA1B (ENSSPUG00000001155) ##25	STK40 (ENSSPUG00000001174) #26	OSCP1 (ENSSPUG00000001212) #27	ENSSPUG00000001378	MRPS15 (ENSSPUG00000001388) #29	ENSSPUG00000001395 #30	ENSSPUG00000001404 #30	ENSSPUG00000001413
Episquamata	ANCESTRAL SPECIES	7	ENSGT00390000005318.b.b.b	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00940000164972	ENSGT00950000182941.a.a.b #22	ENSGT01050000245043	ENSGT00940000159550	ENSGT00940000156221	ENSGT00940000154325.b	ENSGT01100000263536.A.b	ENSGT00940000159513	ENSGT00390000009435	ENSGT01090000260070.B ##12	ENSGT00980000199132	ENSGT01030000234513.A.a.a.a.a	ENSGT01030000234513.A.a.a.a.b.a	ENSGT01030000234513.A.a.a.a.b.b	ENSGT00390000017672	ENSGT00940000164318	ENSGT00940000166312.b.a
Toxicofera	ANCESTRAL SPECIES	29															ENSGT00940000164972	ENSGT00950000182941.a.a.b #22	ENSGT00940000159550	ENSGT00940000156221	ENSGT00940000154325.b	ENSGT01100000263536.A.b	ENSGT00940000159513	ENSGT00390000009435	ENSGT01090000260070.B ##12	ENSGT00980000199132	ENSGT01030000234513.A.a.a.a.a	ENSGT01030000234513.A.a.a.a.b.a	ENSGT01030000234513.A.a.a.a.b.b	ENSGT00390000017672	ENSGT00940000164318	ENSGT00940000166312.b.a	ENSGT00940000159768
Elapidae	ANCESTRAL SPECIES	9	ENSGT00390000005318.b.b.b	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568.bb.b	ENSGT00940000155256	ENSGT00390000003880.b.a	ENSGT00940000154317.a.a	ENSGT00390000015369	ENSGT00950000182894.D	ENSGT00940000164972	ENSGT00950000182941.a.a.b #22	ENSGT00940000159550	ENSGT00940000154325.b	ENSGT01100000263536.A.b	ENSGT00940000159513.b	ENSGT00940000159513.a	ENSGT00390000009435	ENSGT01090000260070.B ##12	ENSGT01030000234513.A.a.a.a.a	ENSGT01030000234911	ENSGT01030000234513.A.a.a.a.b.b	ENSGT00390000017672	ENSGT00940000164318	ENSGT00940000166312.b.b	ENSGT00940000155549.a.b	ENSGT00960000189425
Elapidae_a	ANCESTRAL SPECIES	15	ENSGT00390000005318.b.b.b	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568.bb.b	ENSGT00940000155256	ENSGT00390000003880.b.a	ENSGT00940000154317.a.a	ENSGT00390000015369	ENSGT00950000182894.D	ENSGT00940000164972	ENSGT00950000182941.a.a.b #22	ENSGT00940000159550	ENSGT00940000154325.b	ENSGT01100000263536.A.b	ENSGT00940000159513.b	ENSGT00940000159513.a	ENSGT00390000009435	ENSGT01090000260070.B ##12	ENSGT01030000234513.A.a.a.a.a	ENSGT01030000234911	ENSGT01030000234513.A.a.a.a.b.b	ENSGT00940000159768	ENSGT00960000189425	ENSGT00940000158387	ENSGT00940000159332	ENSGT00940000155689
Blue-lipped sea krait	MODERN SPECIES	7905																MAP7D1 (ENSLLTG00000003599) #22
Acanthophiinae	ANCESTRAL SPECIES	22	ENSGT00390000005318.b.b.b	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568.bb.b	ENSGT00940000155256	ENSGT00390000003880.b.a	ENSGT00940000154317.a.a	ENSGT00390000015369	ENSGT00950000182894.D	ENSGT00940000164972	ENSGT00950000182941.a.a.b #22	ENSGT00940000159550	ENSGT00940000154325.b	ENSGT01100000263536.A.b	ENSGT00940000159513.b	ENSGT00940000159513.a	ENSGT00390000009435	ENSGT01090000260070.B ##12	ENSGT01030000234513.A.a.a.a.a	ENSGT01030000234911	ENSGT01030000234513.A.a.a.a.b.b	ENSGT01030000239398
Mainland tiger snake	MODERN SPECIES	138	MFSD2A (ENSNSUG00000019799)	KIAA0319L (ENSNSUG00000019796)	NCDN (ENSNSUG00000019783)	TFAP2E (ENSNSUG00000019781)	PSMB2 (ENSNSUG00000019780)	C1orf216 (ENSNSUG00000019779)	CLSPN (ENSNSUG00000019773)	AGO4 (ENSNSUG00000019763)	AGO1 (ENSNSUG00000019762)	AGO3 (ENSNSUG00000019741)	TRAPPC3 (ENSNSUG00000019740)	ENSNSUG00000019738	ADPRS (ENSNSUG00000019737)	TEKT2 (ENSNSUG00000019736)	ENSNSUG00000019735	ENSNSUG00000019732 #22	ZMYM4 (ENSNSUG00000019714)	ENSNSUG00000019713	TMEM35B (ENSNSUG00000019712)	ENSNSUG00000019711	ENSNSUG00000019710	ENSNSUG00000019709	ENSNSUG00000019708	SMIM12 (ENSNSUG00000019707)	GJB3 (ENSNSUG00000019705)	ENSNSUG00000019704	ENSNSUG00000019703	ENSNSUG00000019702
Indian cobra	MODERN SPECIES	11	NCDN (ENSNNAG00000004667)	TFAP2E (ENSNNAG00000004641)	PSMB2 (ENSNNAG00000004625)	C1orf216 (ENSNNAG00000004613)	CLSPN (ENSNNAG00000004320)	AGO4 (ENSNNAG00000004226)	ENSNNAG00000004037	ENSNNAG00000003994	AGO3 (ENSNNAG00000003944)	TRAPPC3 (ENSNNAG00000003916)	ENSNNAG00000003869	ENSNNAG00000003814	ADPRS (ENSNNAG00000003788)	TEKT2 (ENSNNAG00000003765)	ENSNNAG00000003741	MAP7D1 (ENSNNAG00000003692) #22	ZMYM4 (ENSNNAG00000018098)	ENSNNAG00000018044	TMEM35B (ENSNNAG00000018038)	ENSNNAG00000018032	DLGAP3 (ENSNNAG00000018007)	SMIM12 (ENSNNAG00000017988)	GJA4 (ENSNNAG00000017982) ##12	GJB3 (ENSNNAG00000017979)	ENSNNAG00000017976	GJB5 (ENSNNAG00000017972)	C1orf94 (ENSNNAG00000017969)	ENSNNAG00000017963	CSMD2 (ENSNNAG00000017865)	COL9A2 (ENSNNAG00000017827)	SMAP2 (ENSNNAG00000017818)
Lizard	MODERN SPECIES	1169															ENSACAG00000013072	ENSACAG00000013159 #22	ENSACAG00000027692	ENSACAG00000038686	ZMYM4 (ENSACAG00000013198)	SFPQ (ENSACAG00000013307)	TMEM35B (ENSACAG00000013378)	ENSACAG00000013383	ENSACAG00000013385
Laterata	ANCESTRAL SPECIES	36	ENSGT00390000005318.b.b.b	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00940000164972	ENSGT00950000182941.a.a.b #22	ENSGT01050000245043	ENSGT00940000159550	ENSGT00940000156221	ENSGT00940000154325.b	ENSGT01100000263536.A.b	ENSGT00940000159513	ENSGT00390000009435	ENSGT00980000199132	ENSGT01090000260070.B ##12	ENSGT01030000234513.A.a.a.a.a	ENSGT01030000234513.A.a.a.a.b.a	ENSGT01030000234513.A.a.a.a.b.b	ENSGT00390000017672	ENSGT00940000159768	ENSGT00950000182933.C
Common wall lizard	MODERN SPECIES	16	ENSPMRG00000009664	NCDN (ENSPMRG00000009848)	TFAP2E (ENSPMRG00000009858)	PSMB2 (ENSPMRG00000009867)	C1orf216 (ENSPMRG00000009878)	CLSPN (ENSPMRG00000009895)	AGO4 (ENSPMRG00000009986)	AGO1 (ENSPMRG00000010343)	AGO3 (ENSPMRG00000011185)	TEKT2 (ENSPMRG00000011285)	ADPRS (ENSPMRG00000011296)	COL8A2 (ENSPMRG00000011302)	ENSPMRG00000011325	TRAPPC3 (ENSPMRG00000011329)	ENSPMRG00000011336	MAP7D1 (ENSPMRG00000011347) #22	ZMYM4 (ENSPMRG00000011364)	ENSPMRG00000011405	ENSPMRG00000011406	DLGAP3 (ENSPMRG00000011410)	SMIM12 (ENSPMRG00000011417)	GJA4 (ENSPMRG00000011419) ##12	GJB3 (ENSPMRG00000011422)	GJB4 (ENSPMRG00000011424)	ENSPMRG00000011426	ENSPMRG00000011429	ENSPMRG00000011431	C1orf94 (ENSPMRG00000011438)	CSMD2 (ENSPMRG00000011468)	ENSPMRG00000008198	COL9A2 (ENSPMRG00000008217)
Argentine black and white tegu	MODERN SPECIES	82															ENSSMRG00000011666	MAP7D1 (ENSSMRG00000011671) #22	ENSSMRG00000011673	ENSSMRG00000011674	ENSSMRG00000011675	ZMYM4 (ENSSMRG00000011677)	SFPQ (ENSSMRG00000011683)	TMEM35B (ENSSMRG00000011690)	ENSSMRG00000011691	DLGAP3 (ENSSMRG00000011699)	SMIM12 (ENSSMRG00000011700)	ENSSMRG00000011701	GJA4 (ENSSMRG00000011702) ##12	GJB3 (ENSSMRG00000011703)	ENSSMRG00000011708	GJB5 (ENSSMRG00000011709)	C1orf94 (ENSSMRG00000011719)
Mammalia	ANCESTRAL SPECIES	19	ENSGT00940000159550	ENSGT00940000155018	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18	ENSGT00940000158871 #17
Theria	ANCESTRAL SPECIES	36	ENSGT00940000156221	ENSGT00940000159550	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18	ENSGT00940000158871 #17
Marsupialia	ANCESTRAL SPECIES	10	ENSGT00940000156221	ENSGT00940000159550	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a.i	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18	ENSGT00940000158871 #17	ENSGT00390000008551
Marsupialia_b	ANCESTRAL SPECIES	4	ENSGT00940000156221	ENSGT00940000159550	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a.i	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18	ENSGT00940000158871 #17	ENSGT00390000008551
Diprotodontia	ANCESTRAL SPECIES	3	ENSGT00940000156221	ENSGT00940000159550	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a.i	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18	ENSGT00940000158871 #17	ENSGT00390000008551
Diprotodontia_a	ANCESTRAL SPECIES	4	ENSGT00940000156221	ENSGT00940000159550	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536.a	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a.i	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18	ENSGT00940000158871 #17	ENSGT00390000008551
koala	MODERN SPECIES	14	ZMYM4 (ENSPCIG00000000748)	ENSPCIG00000005735	KIAA0319L (ENSPCIG00000000705)	NCDN (ENSPCIG00000000687)	TFAP2E (ENSPCIG00000000674)	PSMB2 (ENSPCIG00000000656)	ENSPCIG00000000636	CLSPN (ENSPCIG00000000623)	AGO4 (ENSPCIG00000000092)	AGO1 (ENSPCIG00000000172)	AGO3 (ENSPCIG00000000198)	TEKT2 (ENSPCIG00000000226)	ADPRS (ENSPCIG00000000248)	COL8A2 (ENSPCIG00000000274)	TRAPPC3 (ENSPCIG00000000307)	MAP7D1 (ENSPCIG00000024807) #22	THRAP3 (ENSPCIG00000024805) #23	EVA1B (ENSPCIG00000014860) ##25	STK40 (ENSPCIG00000014864) #26	LSM10 (ENSPCIG00000014865)	OSCP1 (ENSPCIG00000014866) #27	ENSPCIG00000014874 #30	GRIK3 (ENSPCIG00000014898) #31	ZC3H12A (ENSPCIG00000035700) #32	ENSPCIG00000036821	SNIP1 (ENSPCIG00000000204) #20	DNALI1 (ENSPCIG00000000162) #19	GNL2 (ENSPCIG00000000135) #18	RSPO1 (ENSPCIG00000025743) #17	C1orf109 (ENSPCIG00000025741)	CDCA8 (ENSPCIG00000025739)
Common wonbat	MODERN SPECIES	1014	DLGAP3 (ENSVURG00010004031)	ENSVURG00010004017	SFPQ (ENSVURG00010003967)	ZMYM4 (ENSVURG00010003887)	KIAA0319L (ENSVURG00010003844)	NCDN (ENSVURG00010003829)	TFAP2E (ENSVURG00010003800)	ENSVURG00010003776	C1orf216 (ENSVURG00010003767)	CLSPN (ENSVURG00010003394)	AGO1 (ENSVURG00010003341)	AGO4 (ENSVURG00010003234)	TEKT2 (ENSVURG00010003190)	ADPRS (ENSVURG00010003186)	COL8A2 (ENSVURG00010003181)	MAP7D1 (ENSVURG00010003157) #22	THRAP3 (ENSVURG00010003132) #23	ENSVURG00010003118 ##25	STK40 (ENSVURG00010003108) #26	LSM10 (ENSVURG00010003089)	OSCP1 (ENSVURG00010003056) #27	MRPS15 (ENSVURG00010003030) #29	CSF3R (ENSVURG00010003017) #30	ENSVURG00010002992	GRIK3 (ENSVURG00010002934) #31	ZC3H12A (ENSVURG00010002872) #32	MEAF6 (ENSVURG00010002849)	SNIP1 (ENSVURG00010002829) #20	DNALI1 (ENSVURG00010002806) #19	GNL2 (ENSVURG00010002781) #18	RSPO1 (ENSVURG00010002763) #17
Wallaby	MODERN SPECIES	2583																MAP7D1 (ENSMEUG00000016239) #22
Tasmanian devil	MODERN SPECIES	2	ENSSHAG00000016107	ZMYM4 (ENSSHAG00000016398)	KIAA0319L (ENSSHAG00000016681)	NCDN (ENSSHAG00000016854)	TFAP2E (ENSSHAG00000016887)	PSMB2 (ENSSHAG00000021782)	ENSSHAG00000030808	CLSPN (ENSSHAG00000017175)	ENSSHAG00000017320	AGO1 (ENSSHAG00000017468)	AGO3 (ENSSHAG00000029487)	TEKT2 (ENSSHAG00000005473)	ADPRS (ENSSHAG00000029452)	COL8A2 (ENSSHAG00000017647)	ENSSHAG00000023429	MAP7D1 (ENSSHAG00000017810) #22	THRAP3 (ENSSHAG00000017932) #23	EVA1B (ENSSHAG00000017973) ##25	STK40 (ENSSHAG00000017985) #26	OSCP1 (ENSSHAG00000021302) #27	LSM10 (ENSSHAG00000022746)	MRPS15 (ENSSHAG00000018120) #29	ENSSHAG00000018138 #30	GRIK3 (ENSSHAG00000025082) #31	ZC3H12A (ENSSHAG00000021632) #32	MEAF6 (ENSSHAG00000011910)	ENSSHAG00000012118 #20	DNALI1 (ENSSHAG00000012158) #19	GNL2 (ENSSHAG00000012267) #18	RSPO1 (ENSSHAG00000012546) #17	C1orf109 (ENSSHAG00000013153)
Opossum	MODERN SPECIES	3	ENSMODG00000029270	ENSMODG00000047620	KIAA0319L (ENSMODG00000017916)	NCDN (ENSMODG00000017906)	TFAP2E (ENSMODG00000017904)	ENSMODG00000017902	ENSMODG00000017899	CLSPN (ENSMODG00000017895)	AGO4 (ENSMODG00000017888)	AGO1 (ENSMODG00000023335)	AGO3 (ENSMODG00000017869)	TEKT2 (ENSMODG00000017883)	ADPRS (ENSMODG00000017880)	COL8A2 (ENSMODG00000047645)	TRAPPC3 (ENSMODG00000017848)	ENSMODG00000048565 #22	ENSMODG00000017834 #23	ENSMODG00000050671 #23	EVA1B (ENSMODG00000017827) ##25	STK40 (ENSMODG00000017824) #26	LSM10 (ENSMODG00000023328)	OSCP1 (ENSMODG00000017817) #27	MRPS15 (ENSMODG00000017813) #29	CSF3R (ENSMODG00000017810) #30	GRIK3 (ENSMODG00000017802) #31	ZC3H12A (ENSMODG00000017794) #32	ENSMODG00000017787	SNIP1 (ENSMODG00000017778) #20	DNALI1 (ENSMODG00000047771) #19	GNL2 (ENSMODG00000017773) #18	RSPO1 (ENSMODG00000023326) #17
Eutheria	ANCESTRAL SPECIES		ENSGT00940000156221	ENSGT00940000159550	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18	ENSGT00940000158871 #17
Atlantogenata	ANCESTRAL SPECIES	4	ENSGT00940000156221	ENSGT00940000159550	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18	ENSGT00940000158871 #17
Afrotheria	ANCESTRAL SPECIES	15	ENSGT00940000156221	ENSGT00940000159550	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18	ENSGT00940000158871 #17
Afrotheria_a	ANCESTRAL SPECIES	15	ENSGT00940000157337	ENSGT00940000156221	ENSGT00940000159550	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18	ENSGT00940000158871 #17
Elephant	MODERN SPECIES	332	SFPQ (ENSLAFG00000015951)	ZMYM4 (ENSLAFG00000007332)	KIAA0319L (ENSLAFG00000007339)	NCDN (ENSLAFG00000007345)	TFAP2E (ENSLAFG00000029444)	PSMB2 (ENSLAFG00000007353)	C1orf216 (ENSLAFG00000027891)	CLSPN (ENSLAFG00000007905)	AGO4 (ENSLAFG00000010394)	AGO1 (ENSLAFG00000010835)	AGO3 (ENSLAFG00000002744)	TEKT2 (ENSLAFG00000017273)	ADPRS (ENSLAFG00000017280)	ENSLAFG00000030120	TRAPPC3 (ENSLAFG00000009853)	MAP7D1 (ENSLAFG00000009850) #22	THRAP3 (ENSLAFG00000009587) #23	ENSLAFG00000028055 #24	ENSLAFG00000000070 #24	EVA1B (ENSLAFG00000008194) ##25	STK40 (ENSLAFG00000009594) #26	LSM10 (ENSLAFG00000009600)	OSCP1 (ENSLAFG00000021988) #27	MRPS15 (ENSLAFG00000011450) #29	CSF3R (ENSLAFG00000014447) #30	GRIK3 (ENSLAFG00000015216) #31	ENSLAFG00000030279	RSPO1 (ENSLAFG00000006813) #17	ZC3H12A (ENSLAFG00000018720) #32	MEAF6 (ENSLAFG00000018721)	SNIP1 (ENSLAFG00000030689) #20
Hyrax	MODERN SPECIES	3122															TRAPPC3 (ENSPCAG00000002504)	MAP7D1 (ENSPCAG00000002540) #22
Tenrec	MODERN SPECIES	1754																MAP7D1 (ENSETEG00000012550) #22
Xenarthra	ANCESTRAL SPECIES	36	ENSGT00940000156221	ENSGT00940000159550	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18	ENSGT00940000158871 #17
Armadillo	MODERN SPECIES	2908	ENSDNOG00000032775	ZMYM4 (ENSDNOG00000017647)	KIAA0319L (ENSDNOG00000017653)	NCDN (ENSDNOG00000017658)	TFAP2E (ENSDNOG00000036871)	PSMB2 (ENSDNOG00000017663)	C1orf216 (ENSDNOG00000017576)	CLSPN (ENSDNOG00000015628)	AGO4 (ENSDNOG00000015674)	AGO1 (ENSDNOG00000008077)	AGO3 (ENSDNOG00000008106)	TEKT2 (ENSDNOG00000040733)	ADPRS (ENSDNOG00000025495)	COL8A2 (ENSDNOG00000043920)	TRAPPC3 (ENSDNOG00000039424)	MAP7D1 (ENSDNOG00000005516) #22	THRAP3 (ENSDNOG00000031470) #23	SH3D21 (ENSDNOG00000023808) #24	EVA1B (ENSDNOG00000010513) ##25	ENSDNOG00000023624	STK40 (ENSDNOG00000041875) #26	LSM10 (ENSDNOG00000036662)	OSCP1 (ENSDNOG00000040997) #27	MRPS15 (ENSDNOG00000046736) #29	CSF3R (ENSDNOG00000018916) #30	GRIK3 (ENSDNOG00000008042) #31	ZC3H12A (ENSDNOG00000035006) #32	MEAF6 (ENSDNOG00000038956)	ENSDNOG00000014381 #20	DNALI1 (ENSDNOG00000031070) #19	ENSDNOG00000016466 #18
Boreoeutheria	ANCESTRAL SPECIES		ENSGT00940000157613	ENSGT00940000168628	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00390000012030.a	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18	ENSGT00940000158871 #17
Laurasiatheria	ANCESTRAL SPECIES		ENSGT00940000157613	ENSGT00940000168628	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00390000012030.a	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000160627 #24	ENSGT00940000168963	ENSGT00990000210150	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257	ENSGT00940000156553 #20	ENSGT00390000003012 #19
Laurasiatheria_a	ANCESTRAL SPECIES		ENSGT00940000157613	ENSGT00940000168628	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00390000012030.a	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18	ENSGT00940000158871 #17
Laurasiatheria_b	ANCESTRAL SPECIES		ENSGT00940000159550	ENSGT00940000157613	ENSGT00940000168628	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18	ENSGT00940000158871 #17
Carnivora	ANCESTRAL SPECIES	1	ENSGT00940000159550	ENSGT00940000157613	ENSGT00940000168628	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18	ENSGT00940000158871 #17
Caniformia	ANCESTRAL SPECIES	2	ENSGT00940000159550	ENSGT00940000157613	ENSGT00940000168628	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18	ENSGT00940000158871 #17
Canidae	ANCESTRAL SPECIES	12	ENSGT00940000156221.a	ENSGT00940000159550	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18	ENSGT00940000158871 #17
Canis_lupus	ANCESTRAL SPECIES	16	ENSGT00940000157337	ENSGT00940000156221.a	ENSGT00940000159550	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738.k	ENSGT00940000158568	ENSGT00940000155256	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18	ENSGT00940000158871 #17
Dog	MODERN SPECIES	6	ZMYM4 (ENSCAFG00845014825)	KIAA0319L (ENSCAFG00845014738)	NCDN (ENSCAFG00845014699)	TFAP2E (ENSCAFG00845014665)	PSMB2 (ENSCAFG00845014631)	C15H1orf216 (ENSCAFG00845014608)	CLSPN (ENSCAFG00845014565)	AGO1 (ENSCAFG00845030992)	AGO3 (ENSCAFG00845030956)	ADPRHL2 (ENSCAFG00845030916)	COL8A2 (ENSCAFG00845030898)	TRAPPC3 (ENSCAFG00845030892)	THRAP3 (ENSCAFG00845030875) #23	ENSCAFG00845030851 ##25	ENSCAFG00845030827 #24	ENSCAFG00845030799 #22	STK40 (ENSCAFG00845030786) #26	LSM10 (ENSCAFG00845030776)	OSCP1 (ENSCAFG00845030771) #27	ENSCAFG00845030768 #29	CSF3R (ENSCAFG00845030757) #30	GRIK3 (ENSCAFG00845030735) #31	ZC3H12A (ENSCAFG00845030728) #32	MEAF6 (ENSCAFG00845030711)	SNIP1 (ENSCAFG00845030697) #20	DNALI1 (ENSCAFG00845030680) #19	GNL2 (ENSCAFG00845030665) #18	RSPO1 (ENSCAFG00845030653) #17	C15H1orf109 (ENSCAFG00845030642)	CDCA8 (ENSCAFG00845030636)	EPHA10 (ENSCAFG00845030611)
Dingo	MODERN SPECIES	344	ZMYM6 (ENSCAFG00020010705)	ENSCAFG00020010702	ZMYM4 (ENSCAFG00020009999)	KIAA0319L (ENSCAFG00020009949)	NCDN (ENSCAFG00020009945)	TFAP2E (ENSCAFG00020009931)	PSMB2 (ENSCAFG00020009927)	ENSCAFG00020009913	ENSCAFG00020009910	AGO1 (ENSCAFG00020009251)	AGO3 (ENSCAFG00020009051)	TEKT2 (ENSCAFG00020009035)	ADPRS (ENSCAFG00020009028)	COL8A2 (ENSCAFG00020009026)	TRAPPC3 (ENSCAFG00020009022)	MAP7D1 (ENSCAFG00020009006) #22	THRAP3 (ENSCAFG00020008982) #23	ENSCAFG00020008975 ##25	SH3D21 (ENSCAFG00020008955) #24	STK40 (ENSCAFG00020008930) #26	LSM10 (ENSCAFG00020008920)	OSCP1 (ENSCAFG00020008914) #27	MRPS15 (ENSCAFG00020008912) #29	CSF3R (ENSCAFG00020008854) #30	ENSCAFG00020008853	GRIK3 (ENSCAFG00020008653) #31	ZC3H12A (ENSCAFG00020008620) #32	MEAF6 (ENSCAFG00020008613)	ENSCAFG00020008608	SNIP1 (ENSCAFG00020008599) #20	DNALI1 (ENSCAFG00020008587) #19
Red fox	MODERN SPECIES	9	ZMYM4 (ENSVVUG00000000796)	KIAA0319L (ENSVVUG00000000742)	NCDN (ENSVVUG00000000730)	PSMB2 (ENSVVUG00000000594)	CUNH1orf216 (ENSVVUG00000000576)	ENSVVUG00000000567	ENSVVUG00000000502	ENSVVUG00000000479	ENSVVUG00000000465	AGO1 (ENSVVUG00000000405)	AGO3 (ENSVVUG00000000362)	ENSVVUG00000000300	ADPRS (ENSVVUG00000000243)	COL8A2 (ENSVVUG00000000223)	TRAPPC3 (ENSVVUG00000000193)	MAP7D1 (ENSVVUG00000000164) #22	THRAP3 (ENSVVUG00000000118) #23	SH3D21 (ENSVVUG00000023237) #24	ENSVVUG00000023229	STK40 (ENSVVUG00000023215) #26	LSM10 (ENSVVUG00000023209)	OSCP1 (ENSVVUG00000023202) #27	MRPS15 (ENSVVUG00000023194) #29	CSF3R (ENSVVUG00000023189) #30	GRIK3 (ENSVVUG00000023178) #31	ZC3H12A (ENSVVUG00000023171) #32	MEAF6 (ENSVVUG00000023163)	SNIP1 (ENSVVUG00000023160) #20	DNALI1 (ENSVVUG00000023159) #19	GNL2 (ENSVVUG00000023157) #18	RSPO1 (ENSVVUG00000023149) #17
Caniformia_b	ANCESTRAL SPECIES	1	ENSGT00940000159550	ENSGT00940000157613	ENSGT00940000168628	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18	ENSGT00940000158871 #17
Mustelinae	ANCESTRAL SPECIES		ENSGT00940000156221	ENSGT00940000159550	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18	ENSGT00940000158871 #17
American mink	MODERN SPECIES	99	ZMYM1 (ENSNVIG00000011646)	SFPQ (ENSNVIG00000011654)	ZMYM4 (ENSNVIG00000011677)	KIAA0319L (ENSNVIG00000011748)	NCDN (ENSNVIG00000011790)	TFAP2E (ENSNVIG00000011827)	PSMB2 (ENSNVIG00000011855)	CA216 (ENSNVIG00000011868)	CLSPN (ENSNVIG00000011881)	AGO1 (ENSNVIG00000012004)	ENSNVIG00000012133	TEKT2 (ENSNVIG00000012158)	ADPRS (ENSNVIG00000012218)	COL8A2 (ENSNVIG00000012227)	TPPC3 (ENSNVIG00000012239)	MAP7D1 (ENSNVIG00000012295) #22	THRAP3 (ENSNVIG00000012429) #23	ENSNVIG00000012530 #24	EVA1B (ENSNVIG00000012547) ##25	STK40 (ENSNVIG00000012562) #26	LSM10 (ENSNVIG00000012589)	OSCP1 (ENSNVIG00000012600) #27	ENSNVIG00000012683 #29	CSF3R (ENSNVIG00000012698) #30	GRIK3 (ENSNVIG00000012775) #31	ZC3H12A (ENSNVIG00000012804) #32	MEAF6 (ENSNVIG00000012809)	SNIP1 (ENSNVIG00000012822) #20	DNALI1 (ENSNVIG00000012831) #19	GNL2 (ENSNVIG00000012836) #18	RSPO1 (ENSNVIG00000012862) #17
Ferret	MODERN SPECIES	167	ZMYM4 (ENSMPUG00000014924)	KIAA0319L (ENSMPUG00000014917)	NCDN (ENSMPUG00000014913)	TFAP2E (ENSMPUG00000014894)	PSMB2 (ENSMPUG00000014891)	C1orf216 (ENSMPUG00000018596)	CLSPN (ENSMPUG00000014881)	AGO4 (ENSMPUG00000014876)	AGO1 (ENSMPUG00000014872)	ENSMPUG00000014871	TEKT2 (ENSMPUG00000014823)	ADPRS (ENSMPUG00000014821)	COL8A2 (ENSMPUG00000014818)	TRAPPC3 (ENSMPUG00000014815)	ENSMPUG00000018594	MAP7D1 (ENSMPUG00000014812) #22	THRAP3 (ENSMPUG00000014809) #23	ENSMPUG00000014783 #24	EVA1B (ENSMPUG00000014781) ##25	STK40 (ENSMPUG00000014777) #26	LSM10 (ENSMPUG00000018593)	OSCP1 (ENSMPUG00000014774) #27	CSF3R (ENSMPUG00000014768) #30	GRIK3 (ENSMPUG00000014760) #31	ZC3H12A (ENSMPUG00000014758) #32	MEAF6 (ENSMPUG00000014722)	SNIP1 (ENSMPUG00000014718) #20	DNALI1 (ENSMPUG00000014714) #19	GNL2 (ENSMPUG00000014709) #18	RSPO1 (ENSMPUG00000014706) #17	C1orf109 (ENSMPUG00000014702)
Ursidae	ANCESTRAL SPECIES		ENSGT00940000159550	ENSGT00940000157613	ENSGT00940000168628	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536.f	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18	ENSGT00940000158871 #17
Ursus	ANCESTRAL SPECIES		ENSGT00940000159550	ENSGT00940000157613	ENSGT00940000168628	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536.f	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808.a #27	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18	ENSGT00940000158871 #17
Polar bear	MODERN SPECIES	189	ENSUMAG00000007559	NCDN (ENSUMAG00000007557)	TFAP2E (ENSUMAG00000007555)	PSMB2 (ENSUMAG00000007547)	C1orf216 (ENSUMAG00000007539)	ENSUMAG00000007536	ENSUMAG00000007529	AGO4 (ENSUMAG00000006297)	AGO1 (ENSUMAG00000002480)	ENSUMAG00000002065	ENSUMAG00000002033	TEKT2 (ENSUMAG00000002004)	ADPRS (ENSUMAG00000001988)	COL8A2 (ENSUMAG00000001984)	TRAPPC3 (ENSUMAG00000001979)	MAP7D1 (ENSUMAG00000001773) #22	THRAP3 (ENSUMAG00000001744) #23	ENSUMAG00000001726 #24	STK40 (ENSUMAG00000001453) #26	LSM10 (ENSUMAG00000001438)	ENSUMAG00000001369 #27	MRPS15 (ENSUMAG00000001358) #29	CSF3R (ENSUMAG00000001333) #30	GRIK3 (ENSUMAG00000001150) #31	ZC3H12A (ENSUMAG00000001122) #32	MEAF6 (ENSUMAG00000001101)	SNIP1 (ENSUMAG00000001093) #20	DNALI1 (ENSUMAG00000001085) #19	GNL2 (ENSUMAG00000000413) #18	RSPO1 (ENSUMAG00000000320) #17	C1orf109 (ENSUMAG00000000310)
American black bear	MODERN SPECIES	7064																MAP7D1 (ENSUAMG00000023752) #22
Giant Panda	MODERN SPECIES	11	SFPQ (ENSAMEG00000000815)	ZMYM4 (ENSAMEG00000000760)	KIAA0319L (ENSAMEG00000000737)	NCDN (ENSAMEG00000000724)	TFAP2E (ENSAMEG00000028474)	PSMB2 (ENSAMEG00000000715)	C1orf216 (ENSAMEG00000018544)	CLSPN (ENSAMEG00000000679)	AGO4 (ENSAMEG00000000573)	AGO1 (ENSAMEG00000000504)	AGO3 (ENSAMEG00000000497)	TEKT2 (ENSAMEG00000000473)	ADPRS (ENSAMEG00000025564)	COL8A2 (ENSAMEG00000000461)	TRAPPC3 (ENSAMEG00000000457)	MAP7D1 (ENSAMEG00000000412) #22	ENSAMEG00000024644 #23	ENSAMEG00000028122 #23	ENSAMEG00000001385 #24	EVA1B (ENSAMEG00000031396) ##25	STK40 (ENSAMEG00000001415) #26	LSM10 (ENSAMEG00000019854)	OSCP1 (ENSAMEG00000001437) #27	MRPS15 (ENSAMEG00000001463) #29	CSF3R (ENSAMEG00000001480) #30	GRIK3 (ENSAMEG00000001517) #31	ZC3H12A (ENSAMEG00000000991) #32	MEAF6 (ENSAMEG00000027272)	SNIP1 (ENSAMEG00000001009) #20	DNALI1 (ENSAMEG00000001019) #19	GNL2 (ENSAMEG00000001032) #18
Felidae	ANCESTRAL SPECIES	18	ENSGT00940000159550	ENSGT00940000157613	ENSGT00910000144152.b.b.b	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00550000074698.k.a.b.a.a.a	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18
Panthera	ANCESTRAL SPECIES	4	ENSGT00940000159550	ENSGT00940000157613	ENSGT00910000144152.b.b.b	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00550000074698.k.a.b.a.a.a	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18
Panthera_a	ANCESTRAL SPECIES	14	ENSGT00940000159550	ENSGT00940000157613	ENSGT00910000144152.b.b.b	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00550000074698.k.a.b.a.a.a	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18
lion	MODERN SPECIES	8	ZMYM4 (ENSPLOG00000004756)	KIAA0319L (ENSPLOG00000022058)	NCDN (ENSPLOG00000022040)	TFAP2E (ENSPLOG00000022025)	PSMB2 (ENSPLOG00000022003)	C1orf216 (ENSPLOG00000021988)	ENSPLOG00000021982	CLSPN (ENSPLOG00000021959)	AGO1 (ENSPLOG00000021894)	AGO4 (ENSPLOG00000021693)	ENSPLOG00000021615	TEKT2 (ENSPLOG00000021579)	ADPRS (ENSPLOG00000021546)	COL8A2 (ENSPLOG00000021527)	TRAPPC3 (ENSPLOG00000021495)	MAP7D1 (ENSPLOG00000021300) #22	THRAP3 (ENSPLOG00000021215) #23	ENSPLOG00000021161	EVA1B (ENSPLOG00000021132) ##25	STK40 (ENSPLOG00000021083) #26	ENSPLOG00000021048	OSCP1 (ENSPLOG00000020969) #27	MRPS15 (ENSPLOG00000020901) #29	CSF3R (ENSPLOG00000020805) #30	GRIK3 (ENSPLOG00000020707) #31	ZC3H12A (ENSPLOG00000020649) #32	MEAF6 (ENSPLOG00000020523)	SNIP1 (ENSPLOG00000020485) #20	DNALI1 (ENSPLOG00000020424) #19	GNL2 (ENSPLOG00000020381) #18	RSPO1 (ENSPLOG00000020291) #17
leopard	MODERN SPECIES	130	ZMYM4 (ENSPPRG00000013260)	KIAA0319L (ENSPPRG00000012492)	ENSPPRG00000011950	NCDN (ENSPPRG00000010663)	TFAP2E (ENSPPRG00000010109)	PSMB2 (ENSPPRG00000009440)	C1orf216 (ENSPPRG00000015355)	CLSPN (ENSPPRG00000008963)	AGO4 (ENSPPRG00000006520)	AGO1 (ENSPPRG00000006475)	AGO3 (ENSPPRG00000005934)	TEKT2 (ENSPPRG00000005344)	ADPRS (ENSPPRG00000004988)	COL8A2 (ENSPPRG00000004825)	TRAPPC3 (ENSPPRG00000004660)	MAP7D1 (ENSPPRG00000003580) #22	THRAP3 (ENSPPRG00000001735) #23	SH3D21 (ENSPPRG00000001082) #24	EVA1B (ENSPPRG00000023067) ##25	STK40 (ENSPPRG00000023089) #26	LSM10 (ENSPPRG00000014619)	OSCP1 (ENSPPRG00000024092) #27	MRPS15 (ENSPPRG00000024277) #29	CSF3R (ENSPPRG00000024429) #30	ENSPPRG00000019275	GRIK3 (ENSPPRG00000017558) #31	ZC3H12A (ENSPPRG00000014359) #32	MEAF6 (ENSPPRG00000012769)	SNIP1 (ENSPPRG00000011313) #20	DNALI1 (ENSPPRG00000010993) #19	GNL2 (ENSPPRG00000010528) #18
Tiger	MODERN SPECIES	383	ENSPTIG00000007710	ZMYM4 (ENSPTIG00000008677)	KIAA0319L (ENSPTIG00000011048)	NCDN (ENSPTIG00000012074)	TFAP2E (ENSPTIG00000014612)	PSMB2 (ENSPTIG00000015407)	C1orf216 (ENSPTIG00000003921)	CLSPN (ENSPTIG00000016555)	AGO4 (ENSPTIG00000020262)	AGO1 (ENSPTIG00000020991)	AGO3 (ENSPTIG00000001029)	TEKT2 (ENSPTIG00000009996)	ADPRS (ENSPTIG00000010575)	COL8A2 (ENSPTIG00000011151)	TRAPPC3 (ENSPTIG00000011666)	MAP7D1 (ENSPTIG00000012934) #22	THRAP3 (ENSPTIG00000016888) #23	SH3D21 (ENSPTIG00000017828) #24	ENSPTIG00000020226	STK40 (ENSPTIG00000020622) #26	LSM10 (ENSPTIG00000004613)	OSCP1 (ENSPTIG00000021848) #27	MRPS15 (ENSPTIG00000022020) #29	CSF3R (ENSPTIG00000002473) #30	ENSPTIG00000009786	GRIK3 (ENSPTIG00000010943) #31	ZC3H12A (ENSPTIG00000012943) #32	MEAF6 (ENSPTIG00000013885)	SNIP1 (ENSPTIG00000014216) #20	DNALI1 (ENSPTIG00000014464) #19	GNL2 (ENSPTIG00000015095) #18
Cat	MODERN SPECIES	239	ZMYM4 (ENSFCAG00000029162)	KIAA0319L (ENSFCAG00000013873)	ENSFCAG00000038220	NCDN (ENSFCAG00000013876)	TFAP2E (ENSFCAG00000013878)	PSMB2 (ENSFCAG00000030845)	CC1H1orf216 (ENSFCAG00000013881)	CLSPN (ENSFCAG00000013882)	AGO4 (ENSFCAG00000006218)	AGO1 (ENSFCAG00000000746)	AGO3 (ENSFCAG00000000747)	TEKT2 (ENSFCAG00000012461)	ADPRS (ENSFCAG00000012465)	COL8A2 (ENSFCAG00000042990)	TRAPPC3 (ENSFCAG00000043644)	MAP7D1 (ENSFCAG00000012469) #22	THRAP3 (ENSFCAG00000014127) #23	SH3D21 (ENSFCAG00000051592) #24	EVA1B (ENSFCAG00000026800) ##25	STK40 (ENSFCAG00000005262) #26	LSM10 (ENSFCAG00000047113)	OSCP1 (ENSFCAG00000005258) #27	MRPS15 (ENSFCAG00000005265) #29	CSF3R (ENSFCAG00000013269) #30	ENSFCAG00000029626	GRIK3 (ENSFCAG00000005150) #31	ZC3H12A (ENSFCAG00000008757) #32	MEAF6 (ENSFCAG00000038230)	SNIP1 (ENSFCAG00000008758) #20	DNALI1 (ENSFCAG00000008759) #19	GNL2 (ENSFCAG00000008760) #18
Laurasiatheria_c	ANCESTRAL SPECIES		ENSGT00940000156221	ENSGT00940000159550	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18	ENSGT00940000158871 #17
Equus	ANCESTRAL SPECIES	2	ENSGT00940000156221	ENSGT00940000159550	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT01030000238136	ENSGT00940000159465 #31	ENSGT00940000171437	ENSGT00940000155107.a.a #32	ENSGT00390000015257	ENSGT00940000156553 #20	ENSGT00390000003012 #19
Donkey	MODERN SPECIES	25	SFPQ (ENSEASG00005012012)	ZMYM4 (ENSEASG00005012020)	KIAA0319L (ENSEASG00005012027)	NCDN (ENSEASG00005012034)	TFAP2E (ENSEASG00005012037)	PSMB2 (ENSEASG00005012040)	C1orf216 (ENSEASG00005029553)	CLSPN (ENSEASG00005012055)	AGO4 (ENSEASG00005012079)	AGO1 (ENSEASG00005012086)	AGO3 (ENSEASG00005012089)	TEKT2 (ENSEASG00005012098)	ADPRS (ENSEASG00005012163)	COL8A2 (ENSEASG00005012168)	TRAPPC3 (ENSEASG00005038259)	MAP7D1 (ENSEASG00005012176) #22	THRAP3 (ENSEASG00005012182) #23	ENSEASG00005012187 #24	EVA1B (ENSEASG00005012191) ##25	STK40 (ENSEASG00005012192) #26	LSM10 (ENSEASG00005031673)	OSCP1 (ENSEASG00005012195) #27	MRPS15 (ENSEASG00005032042) #29	CSF3R (ENSEASG00005012209) #30	ENSEASG00005012213	GRIK3 (ENSEASG00005012214) #31	ENSEASG00005012219	MEAF6 (ENSEASG00005012221)	SNIP1 (ENSEASG00005012223) #20	DNALI1 (ENSEASG00005024722) #19	GNL2 (ENSEASG00005012227) #18
Horse	MODERN SPECIES	11	ENSECAG00000055111	ZMYM4 (ENSECAG00000008800)	NCDN (ENSECAG00000008891)	KIAA0319L (ENSECAG00000012927)	TFAP2E (ENSECAG00000003027)	PSMB2 (ENSECAG00000021615)	C2H1orf216 (ENSECAG00000005102)	CLSPN (ENSECAG00000009472)	AGO4 (ENSECAG00000023972)	AGO1 (ENSECAG00000024353)	AGO3 (ENSECAG00000051188)	TEKT2 (ENSECAG00000017670)	ADPRS (ENSECAG00000013445)	COL8A2 (ENSECAG00000012799)	TRAPPC3 (ENSECAG00000012569)	MAP7D1 (ENSECAG00000001581) #22	THRAP3 (ENSECAG00000021207) #23	SH3D21 (ENSECAG00000020556) #24	STK40 (ENSECAG00000015678) #26	LSM10 (ENSECAG00000005071)	OSCP1 (ENSECAG00000008850) #27	MRPS15 (ENSECAG00000000933) #29	CSF3R (ENSECAG00000013457) #30	ENSECAG00000040086	GRIK3 (ENSECAG00000010275) #31	ENSECAG00000032155	ZC3H12A (ENSECAG00000009562) #32	MEAF6 (ENSECAG00000022449)	SNIP1 (ENSECAG00000021869) #20	DNALI1 (ENSECAG00000018337) #19	GNL2 (ENSECAG00000008068) #18
Chiroptera	ANCESTRAL SPECIES		ENSGT00940000156221	ENSGT00940000159550	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18	ENSGT00940000158871 #17
Microchiroptera	ANCESTRAL SPECIES	1	ENSGT00940000156221	ENSGT00940000159550	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18	ENSGT00940000158871 #17
Greater horseshoe bat	MODERN SPECIES	27	SFPQ (ENSRFEG00010001256)	ZMYM4 (ENSRFEG00010001311)	KIAA0319L (ENSRFEG00010001380)	NCDN (ENSRFEG00010001441)	TFAP2E (ENSRFEG00010001481)	ENSRFEG00010001507	C1orf216 (ENSRFEG00010001522)	CLSPN (ENSRFEG00010001591)	AGO4 (ENSRFEG00010001742)	AGO1 (ENSRFEG00010001802)	AGO3 (ENSRFEG00010001891)	TEKT2 (ENSRFEG00010001943)	ADPRS (ENSRFEG00010001958)	COL8A2 (ENSRFEG00010001979)	TRAPPC3 (ENSRFEG00010002008)	MAP7D1 (ENSRFEG00010002111) #22	THRAP3 (ENSRFEG00010002289) #23	ENSRFEG00010002356	EVA1B (ENSRFEG00010002372) ##25	STK40 (ENSRFEG00010002403) #26	LSM10 (ENSRFEG00010002437)	OSCP1 (ENSRFEG00010002458) #27	MRPS15 (ENSRFEG00010002496) #29	CSF3R (ENSRFEG00010002521) #30	ENSRFEG00010002566	GRIK3 (ENSRFEG00010002581) #31	ZC3H12A (ENSRFEG00010002614) #32	MEAF6 (ENSRFEG00010002688)	SNIP1 (ENSRFEG00010002767) #20	DNALI1 (ENSRFEG00010002793) #19	GNL2 (ENSRFEG00010002826) #18
Microbat	MODERN SPECIES	1068	ZMYM4 (ENSMLUG00000004018)	ENSMLUG00000026401	KIAA0319L (ENSMLUG00000004024)	NCDN (ENSMLUG00000009374)	TFAP2E (ENSMLUG00000009852)	PSMB2 (ENSMLUG00000009862)	C1orf216 (ENSMLUG00000017091)	CLSPN (ENSMLUG00000017093)	AGO4 (ENSMLUG00000017102)	AGO1 (ENSMLUG00000009628)	AGO3 (ENSMLUG00000009668)	TEKT2 (ENSMLUG00000011491)	ADPRS (ENSMLUG00000027862)	COL8A2 (ENSMLUG00000011023)	TRAPPC3 (ENSMLUG00000002140)	MAP7D1 (ENSMLUG00000012362) #22	THRAP3 (ENSMLUG00000006447) #23	ENSMLUG00000006453 #24	ENSMLUG00000006458	EVA1B (ENSMLUG00000024745) ##25	STK40 (ENSMLUG00000006463) #26	LSM10 (ENSMLUG00000023895)	OSCP1 (ENSMLUG00000006472) #27	MRPS15 (ENSMLUG00000006475) #29	CSF3R (ENSMLUG00000006479) #30
Megabat	MODERN SPECIES	650									AGO4 (ENSPVAG00000005079)	AGO1 (ENSPVAG00000005082)	AGO3 (ENSPVAG00000005086)	TEKT2 (ENSPVAG00000005089)	ADPRS (ENSPVAG00000005090)	ENSPVAG00000005091	TRAPPC3 (ENSPVAG00000005094)	MAP7D1 (ENSPVAG00000005095) #22
Artiodactyla	ANCESTRAL SPECIES		ENSGT00940000159550	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00390000012030.a	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18	ENSGT00940000158871 #17
Suina	ANCESTRAL SPECIES	10	ENSGT00940000156221	ENSGT00940000159550	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18	ENSGT00940000158871 #17
Chacoan peccary	MODERN SPECIES	39	KIAA0319L (ENSCWAG00000009706)	NCDN (ENSCWAG00000009618)	TFAP2E (ENSCWAG00000009465)	PSMB2 (ENSCWAG00000009415)	C1orf216 (ENSCWAG00000009403)	CLSPN (ENSCWAG00000009253)	ENSCWAG00000009201	AGO4 (ENSCWAG00000009127)	AGO1 (ENSCWAG00000009026)	ENSCWAG00000008976	ENSCWAG00000008735	TEKT2 (ENSCWAG00000008694)	ADPRS (ENSCWAG00000008618)	COL8A2 (ENSCWAG00000008567)	TRAPPC3 (ENSCWAG00000008474)	MAP7D1 (ENSCWAG00000008245) #22	THRAP3 (ENSCWAG00000008133) #23	ENSCWAG00000008017	EVA1B (ENSCWAG00000007937) ##25	STK40 (ENSCWAG00000007890) #26	LSM10 (ENSCWAG00000007870)	OSCP1 (ENSCWAG00000007749) #27	MRPS15 (ENSCWAG00000007709) #29	CSF3R (ENSCWAG00000007434) #30	GRIK3 (ENSCWAG00000007280) #31	ENSCWAG00000007239 #32	MEAF6 (ENSCWAG00000007151)	SNIP1 (ENSCWAG00000007114) #20	DNALI1 (ENSCWAG00000007051) #19	GNL2 (ENSCWAG00000007009) #18	RSPO1 (ENSCWAG00000006919) #17
Pig	MODERN SPECIES	14	KIAA0319L (ENSSSCG00000037121)	ENSSSCG00000062913	NCDN (ENSSSCG00000031786)	TFAP2E (ENSSSCG00000040097)	PSMB2 (ENSSSCG00000035914)	ENSSSCG00000037699	C1orf216 (ENSSSCG00000037600)	CLSPN (ENSSSCG00000003628)	AGO3 (ENSSSCG00000003630)	ENSSSCG00000055207	ENSSSCG00000003632	TEKT2 (ENSSSCG00000003633)	ADPRS (ENSSSCG00000003634)	COL8A2 (ENSSSCG00000033641)	TRAPPC3 (ENSSSCG00000037213)	MAP7D1 (ENSSSCG00000003637) #22	THRAP3 (ENSSSCG00000029954) #23	ENSSSCG00000028892 #24	EVA1B (ENSSSCG00000033892) ##25	STK40 (ENSSSCG00000036832) #26	LSM10 (ENSSSCG00000038916)	OSCP1 (ENSSSCG00000036709) #27	MRPS15 (ENSSSCG00000034647) #29	CSF3R (ENSSSCG00000025795) #30	GRIK3 (ENSSSCG00000003640) #31	ZC3H12A (ENSSSCG00000037815) #32	MEAF6 (ENSSSCG00000034611)	SNIP1 (ENSSSCG00000029991) #20	DNALI1 (ENSSSCG00000058884) #19	GNL2 (ENSSSCG00000031631) #18	RSPO1 (ENSSSCG00000032240) #17
Artiodactyla_a	ANCESTRAL SPECIES		ENSGT00940000159550	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00390000012030.a	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18	ENSGT00940000158871 #17
Artiodactyla_b	ANCESTRAL SPECIES		ENSGT00940000159550	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00390000012030.a	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18	ENSGT00940000158871 #17
Pecora	ANCESTRAL SPECIES	2	ENSGT00940000159550	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00390000012030.a	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18	ENSGT00940000158871 #17
Yarkand deer	MODERN SPECIES	12	KIAA0319L (ENSCHYG00000027073)	NCDN (ENSCHYG00000027067)	TFAP2E (ENSCHYG00000027065)	PSMB2 (ENSCHYG00000027060)	C1orf216 (ENSCHYG00000027059)	CLSPN (ENSCHYG00000027053)	ENSCHYG00000027052	AGO4 (ENSCHYG00000027041)	ENSCHYG00000027036	AGO3 (ENSCHYG00000027029)	ENSCHYG00000027026	TEKT2 (ENSCHYG00000027024)	ADPRS (ENSCHYG00000027021)	COL8A2 (ENSCHYG00000027017)	TRAPPC3 (ENSCHYG00000027012)	MAP7D1 (ENSCHYG00000027002) #22	ENSCHYG00000026996	THRAP3 (ENSCHYG00000026991) #23	SH3D21 (ENSCHYG00000026983) #24	EVA1B (ENSCHYG00000026978) ##25	STK40 (ENSCHYG00000026974) #26	LSM10 (ENSCHYG00000026972)	OSCP1 (ENSCHYG00000026967) #27	MRPS15 (ENSCHYG00000026961) #29	CSF3R (ENSCHYG00000026959) #30	GRIK3 (ENSCHYG00000026942) #31	ENSCHYG00000026936	ZC3H12A (ENSCHYG00000026932) #32	SNIP1 (ENSCHYG00000026912) #20	DNALI1 (ENSCHYG00000026895) #19	GNL2 (ENSCHYG00000026865) #18
Percora_a	ANCESTRAL SPECIES	1	ENSGT00940000159550	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00390000012030.a	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18	ENSGT00940000158871 #17
Siberian musk deer	MODERN SPECIES	4	ZMYM4 (ENSMMSG00000009791)	KIAA0319L (ENSMMSG00000009718)	NCDN (ENSMMSG00000009667)	TFAP2E (ENSMMSG00000009625)	PSMB2 (ENSMMSG00000009599)	C1orf216 (ENSMMSG00000009587)	CLSPN (ENSMMSG00000009515)	AGO4 (ENSMMSG00000009404)	AGO1 (ENSMMSG00000009238)	AGO3 (ENSMMSG00000009092)	ENSMMSG00000009060	TEKT2 (ENSMMSG00000008997)	ADPRS (ENSMMSG00000008967)	COL8A2 (ENSMMSG00000008947)	TRAPPC3 (ENSMMSG00000008867)	MAP7D1 (ENSMMSG00000008733) #22	THRAP3 (ENSMMSG00000008671) #23	SH3D21 (ENSMMSG00000008627) #24	EVA1B (ENSMMSG00000008604) ##25	STK40 (ENSMMSG00000008536) #26	LSM10 (ENSMMSG00000008521)	OSCP1 (ENSMMSG00000008440) #27	MRPS15 (ENSMMSG00000008409) #29	CSF3R (ENSMMSG00000008372) #30	GRIK3 (ENSMMSG00000008231) #31	ZC3H12A (ENSMMSG00000008185) #32	MEAF6 (ENSMMSG00000008080)	ENSMMSG00000008041 #20	DNALI1 (ENSMMSG00000007981) #19	GNL2 (ENSMMSG00000007948) #18	RSPO1 (ENSMMSG00000007885) #17
Bovidae	ANCESTRAL SPECIES	1	ENSGT00940000159550	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00390000012030.a	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18	ENSGT00940000158871 #17
Caprinae	ANCESTRAL SPECIES	2	ENSGT00940000159550	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00390000012030.a	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00390000001737.j #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18	ENSGT00940000158871 #17
Rambouillet Sheep	MODERN SPECIES		ENSOARG00020010396	KIAA0319L (ENSOARG00020010426)	NCDN (ENSOARG00020010602)	TFAP2E (ENSOARG00020010658)	PSMB2 (ENSOARG00020010787)	C1orf216 (ENSOARG00020010859)	CLSPN (ENSOARG00020010932)	AGO4 (ENSOARG00020012103)	AGO1 (ENSOARG00020012325)	AGO3 (ENSOARG00020012702)	ENSOARG00020012933	TEKT2 (ENSOARG00020012976)	ADPRS (ENSOARG00020013078)	COL8A2 (ENSOARG00020013134)	TRAPPC3 (ENSOARG00020013190)	MAP7D1 (ENSOARG00020013418) #22	THRAP3 (ENSOARG00020013606) #23	ENSOARG00020013812 #24	EVA1B (ENSOARG00020014434) ##25	STK40 (ENSOARG00020014470) #26	LSM10 (ENSOARG00020014526)	OSCP1 (ENSOARG00020014556) #27	MRPS15 (ENSOARG00020014966) #29	CSF3R (ENSOARG00020015107) #30	GRIK3 (ENSOARG00020015177) #31	ZC3H12A (ENSOARG00020015441) #32	MEAF6 (ENSOARG00020015561)	SNIP1 (ENSOARG00020015736) #20	DNALI1 (ENSOARG00020015777) #19	GNL2 (ENSOARG00020015915) #18	RSPO1 (ENSOARG00020016022) #17
Goat	MODERN SPECIES	22	ENSCHIG00000026273	KIAA0319L (ENSCHIG00000020470)	ENSCHIG00000016571	NCDN (ENSCHIG00000026559)	TFAP2E (ENSCHIG00000021809)	PSMB2 (ENSCHIG00000016929)	C1orf216 (ENSCHIG00000008904)	CLSPN (ENSCHIG00000023309)	AGO4 (ENSCHIG00000026564)	ENSCHIG00000011848	AGO3 (ENSCHIG00000011536)	TEKT2 (ENSCHIG00000026732)	ADPRS (ENSCHIG00000011636)	COL8A2 (ENSCHIG00000023849)	TRAPPC3 (ENSCHIG00000015948)	MAP7D1 (ENSCHIG00000003118) #22	THRAP3 (ENSCHIG00000022784) #23	ENSCHIG00000018156 #24	EVA1B (ENSCHIG00000011422) ##25	STK40 (ENSCHIG00000020883) #26	LSM10 (ENSCHIG00000009398)	OSCP1 (ENSCHIG00000012198) #27	ENSCHIG00000016923 #29	CSF3R (ENSCHIG00000006768) #30	GRIK3 (ENSCHIG00000021730) #31	ZC3H12A (ENSCHIG00000021957) #32	MEAF6 (ENSCHIG00000002979)	SNIP1 (ENSCHIG00000013452) #20	DNALI1 (ENSCHIG00000007466) #19	GNL2 (ENSCHIG00000015731) #18	RSPO1 (ENSCHIG00000023675) #17
Bovinae	ANCESTRAL SPECIES	1	ENSGT00940000159550	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00390000012030.a	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18	ENSGT00940000158871 #17
Bos	ANCESTRAL SPECIES		ENSGT00940000159550	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00390000012030.a	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18	ENSGT00940000158871 #17
Bos_a	ANCESTRAL SPECIES	1	ENSGT00940000159550	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00390000012030.a	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18	ENSGT00940000158871 #17	ENSGT00390000008551
Domestic yak	MODERN SPECIES	22	KIAA0319L (ENSBGRG00000011159)	NCDN (ENSBGRG00000010990)	TFAP2E (ENSBGRG00000010881)	PSMB2 (ENSBGRG00000010708)	C1orf216 (ENSBGRG00000010647)	CLSPN (ENSBGRG00000010482)	ENSBGRG00000010448	AGO1 (ENSBGRG00000010203)	ENSBGRG00000010165	AGO4 (ENSBGRG00000009562)	ENSBGRG00000009506	TEKT2 (ENSBGRG00000009332)	ADPRS (ENSBGRG00000009212)	COL8A2 (ENSBGRG00000009153)	TRAPPC3 (ENSBGRG00000009085)	MAP7D1 (ENSBGRG00000008399) #22	ENSBGRG00000008330	THRAP3 (ENSBGRG00000008220) #23	SH3D21 (ENSBGRG00000008077) #24	ENSBGRG00000008041 ##25	STK40 (ENSBGRG00000007897) #26	LSM10 (ENSBGRG00000007878)	OSCP1 (ENSBGRG00000007695) #27	CSF3R (ENSBGRG00000007254) #30	ENSBGRG00000007155	GRIK3 (ENSBGRG00000006888) #31	ZC3H12A (ENSBGRG00000006725) #32	SNIP1 (ENSBGRG00000006583) #20	DNALI1 (ENSBGRG00000006531) #19	GNL2 (ENSBGRG00000006437) #18	RSPO1 (ENSBGRG00000006342) #17
Wild yak	MODERN SPECIES	504	NCDN (ENSBMUG00000021543)	TFAP2E (ENSBMUG00000021558)	PSMB2 (ENSBMUG00000021571)	ENSBMUG00000021576	C1orf216 (ENSBMUG00000021588)	CLSPN (ENSBMUG00000021706)	AGO4 (ENSBMUG00000021730)	AGO1 (ENSBMUG00000021749)	AGO3 (ENSBMUG00000021761)	ENSBMUG00000021797	ENSBMUG00000021805	TEKT2 (ENSBMUG00000021822)	ADPRS (ENSBMUG00000021835)	COL8A2 (ENSBMUG00000021845)	TRAPPC3 (ENSBMUG00000021877)	MAP7D1 (ENSBMUG00000021965) #22	THRAP3 (ENSBMUG00000022036) #23	SH3D21 (ENSBMUG00000022061) #24	EVA1B (ENSBMUG00000022076) ##25	STK40 (ENSBMUG00000022119) #26	LSM10 (ENSBMUG00000022140)	NPHP4 (ENSBMUG00000000118)	KCNAB2 (ENSBMUG00000000324)	CHD5 (ENSBMUG00000000423)	RPL22 (ENSBMUG00000000473)	RNF207 (ENSBMUG00000000544)	ICMT (ENSBMUG00000000568)	GPR153 (ENSBMUG00000000578)	ACOT7 (ENSBMUG00000000671)	ENSBMUG00000000699	ENSBMUG00000000714
Bos_b	ANCESTRAL SPECIES	1	ENSGT00940000159550	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00390000012030.a	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18	ENSGT00940000158871 #17
Cow	MODERN SPECIES	22	ZMYM4 (ENSBTAG00000021023)	KIAA0319L (ENSBTAG00000016694)	NCDN (ENSBTAG00000016696)	TFAP2E (ENSBTAG00000001959)	PSMB2 (ENSBTAG00000002377)	C3H1orf216 (ENSBTAG00000038292)	CLSPN (ENSBTAG00000002826)	AGO4 (ENSBTAG00000015220)	AGO1 (ENSBTAG00000012253)	AGO3 (ENSBTAG00000018324)	ENSBTAG00000055249	TEKT2 (ENSBTAG00000021714)	ADPRS (ENSBTAG00000021715)	COL8A2 (ENSBTAG00000010175)	TRAPPC3 (ENSBTAG00000005732)	MAP7D1 (ENSBTAG00000030301) #22	THRAP3 (ENSBTAG00000024095) #23	SH3D21 (ENSBTAG00000038617) #24	EVA1B (ENSBTAG00000014358) ##25	STK40 (ENSBTAG00000015969) #26	LSM10 (ENSBTAG00000024096)	OSCP1 (ENSBTAG00000007994) #27	MRPS15 (ENSBTAG00000024097) #29	CSF3R (ENSBTAG00000013334) #30	GRIK3 (ENSBTAG00000009269) #31	ZC3H12A (ENSBTAG00000011316) #32	MEAF6 (ENSBTAG00000010506)	SNIP1 (ENSBTAG00000016852) #20	DNALI1 (ENSBTAG00000002583) #19	GNL2 (ENSBTAG00000003849) #18	RSPO1 (ENSBTAG00000003837) #17
Hybrid Bos Indicus	MODERN SPECIES	22	NCDN (ENSBIXG00005026659)	KIAA0319L (ENSBIXG00005026746)	TFAP2E (ENSBIXG00005026820)	PSMB2 (ENSBIXG00005026844)	C1orf216 (ENSBIXG00005026857)	CLSPN (ENSBIXG00005004592)	ENSBIXG00005026903	ENSBIXG00005026911	AGO1 (ENSBIXG00005026944)	ENSBIXG00005026966	AGO3 (ENSBIXG00005027246)	ENSBIXG00005005614	TEKT2 (ENSBIXG00005027402)	COL8A2 (ENSBIXG00005027444)	TRAPPC3 (ENSBIXG00005007591)	MAP7D1 (ENSBIXG00005027608) #22	THRAP3 (ENSBIXG00005027648) #23	ENSBIXG00005004754 #24	EVA1B (ENSBIXG00005027691) ##25	STK40 (ENSBIXG00005027735) #26	LSM10 (ENSBIXG00005027748)	OSCP1 (ENSBIXG00005027790) #27	MRPS15 (ENSBIXG00005027828) #29	CSF3R (ENSBIXG00005027869) #30	GRIK3 (ENSBIXG00005027987) #31	ZC3H12A (ENSBIXG00005028023) #32	SNIP1 (ENSBIXG00005028139) #20	DNALI1 (ENSBIXG00005028180) #19	GNL2 (ENSBIXG00005028205) #18	RSPO1 (ENSBIXG00005028242) #17	C1orf109 (ENSBIXG00005028256)
American bison	MODERN SPECIES	3081	ZMYM4 (ENSBBBG00000021494)	KIAA0319L (ENSBBBG00000008471)	NCDN (ENSBBBG00000021563)	ENSBBBG00000021575	PSMB2 (ENSBBBG00000021588)	C1orf216 (ENSBBBG00000021593)	CLSPN (ENSBBBG00000021717)	AGO4 (ENSBBBG00000021763)	AGO1 (ENSBBBG00000021806)	AGO3 (ENSBBBG00000008372)	ENSBBBG00000007681	TEKT2 (ENSBBBG00000021903)	ADPRS (ENSBBBG00000021910)	COL8A2 (ENSBBBG00000021919)	TRAPPC3 (ENSBBBG00000021943)	MAP7D1 (ENSBBBG00000022091) #22	THRAP3 (ENSBBBG00000022137) #23	ENSBBBG00000022154 #24	EVA1B (ENSBBBG00000007200) ##25	STK40 (ENSBBBG00000022179) #26	LSM10 (ENSBBBG00000022186)	OSCP1 (ENSBBBG00000022249) #27	MRPS15 (ENSBBBG00000022276) #29	CSF3R (ENSBBBG00000005872) #30	GRIK3 (ENSBBBG00000022330) #31
Cetacea	ANCESTRAL SPECIES		ENSGT00940000159550	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00390000012030.a	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00990000210150	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00390000001737.g #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18
Odontoceti	ANCESTRAL SPECIES		ENSGT00940000159550	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00390000012030.a	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00990000210150	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00390000001737.g #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18
Odontoceti_a	ANCESTRAL SPECIES		ENSGT00940000159550	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00390000012030.a	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00990000210150	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00390000001737.g #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18
Odontoceti_b	ANCESTRAL SPECIES		ENSGT00940000159550	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00390000012030.a	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00990000210150	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00390000001737.g #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000154717.ib	ENSGT00940000155107.a.a #32	ENSGT00390000015257	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18
Monodontidae	ANCESTRAL SPECIES		ENSGT00940000159550	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00390000012030.a	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00990000210150	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00390000001737.g #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000154717.ib	ENSGT00940000155107.a.a #32	ENSGT00390000015257	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18
Beluga whale	MODERN SPECIES	74	SFPQ (ENSDLEG00000020526)	ZMYM4 (ENSDLEG00000020543)	KIAA0319L (ENSDLEG00000020588)	NCDN (ENSDLEG00000020601)	TFAP2E (ENSDLEG00000020609)	PSMB2 (ENSDLEG00000020616)	CUNH1orf216 (ENSDLEG00000020623)	CLSPN (ENSDLEG00000020638)	AGO4 (ENSDLEG00000020706)	AGO1 (ENSDLEG00000020718)	AGO3 (ENSDLEG00000020726)	ENSDLEG00000020733	TEKT2 (ENSDLEG00000020737)	COL8A2 (ENSDLEG00000020743)	TRAPPC3 (ENSDLEG00000020746)	MAP7D1 (ENSDLEG00000020755) #22	THRAP3 (ENSDLEG00000020766) #23	ENSDLEG00000020772	EVA1B (ENSDLEG00000020774) ##25	STK40 (ENSDLEG00000020778) #26	LSM10 (ENSDLEG00000020785)	OSCP1 (ENSDLEG00000020789) #27	ENSDLEG00000020797 #29	CSF3R (ENSDLEG00000020804) #30	GRIK3 (ENSDLEG00000020811) #31	ENSDLEG00000020819	ZC3H12A (ENSDLEG00000020831) #32	MEAF6 (ENSDLEG00000020839)	SNIP1 (ENSDLEG00000020851) #20	DNALI1 (ENSDLEG00000020862) #19	GNL2 (ENSDLEG00000007944) #18
Narwhal	MODERN SPECIES	304	ZMYM4 (ENSMMNG00015009519)	KIAA0319L (ENSMMNG00015009434)	NCDN (ENSMMNG00015009414)	TFAP2E (ENSMMNG00015009400)	PSMB2 (ENSMMNG00015009386)	C1orf216 (ENSMMNG00015009379)	CLSPN (ENSMMNG00015009362)	AGO1 (ENSMMNG00015009304)	AGO4 (ENSMMNG00015009235)	ENSMMNG00015009200	ENSMMNG00015009194	TEKT2 (ENSMMNG00015009187)	ADPRS (ENSMMNG00015009176)	COL8A2 (ENSMMNG00015009172)	TRAPPC3 (ENSMMNG00015009162)	MAP7D1 (ENSMMNG00015009143) #22	THRAP3 (ENSMMNG00015009123) #23	ENSMMNG00015009102	EVA1B (ENSMMNG00015009093) ##25	STK40 (ENSMMNG00015009085) #26	LSM10 (ENSMMNG00015009078)	OSCP1 (ENSMMNG00015009023) #27	MRPS15 (ENSMMNG00015009004) #29	CSF3R (ENSMMNG00015008991) #30	GRIK3 (ENSMMNG00015008981) #31	ZC3H12A (ENSMMNG00015008939) #32	MEAF6 (ENSMMNG00015008912)	SNIP1 (ENSMMNG00015008842) #20	DNALI1 (ENSMMNG00015008824) #19	GNL2 (ENSMMNG00015008807) #18	RSPO1 (ENSMMNG00015008781) #17
Vaquita	MODERN SPECIES		ZMYM4 (ENSPSNG00000014647)	KIAA0319L (ENSPSNG00000014729)	NCDN (ENSPSNG00000014884)	TFAP2E (ENSPSNG00000015021)	PSMB2 (ENSPSNG00000015130)	C1orf216 (ENSPSNG00000015213)	CLSPN (ENSPSNG00000015267)	AGO4 (ENSPSNG00000015400)	AGO1 (ENSPSNG00000015633)	AGO3 (ENSPSNG00000015767)	ENSPSNG00000015925	TEKT2 (ENSPSNG00000016008)	ADPRS (ENSPSNG00000016066)	COL8A2 (ENSPSNG00000016120)	TRAPPC3 (ENSPSNG00000016166)	MAP7D1 (ENSPSNG00000016291) #22	THRAP3 (ENSPSNG00000016451) #23	ENSPSNG00000016520	EVA1B (ENSPSNG00000016616) ##25	STK40 (ENSPSNG00000016665) #26	LSM10 (ENSPSNG00000016792)	OSCP1 (ENSPSNG00000016833) #27	ENSPSNG00000017018 #29	CSF3R (ENSPSNG00000017067) #30	GRIK3 (ENSPSNG00000017499) #31	ENSPSNG00000017843	ZC3H12A (ENSPSNG00000017941) #32	MEAF6 (ENSPSNG00000018028)	SNIP1 (ENSPSNG00000018177) #20	DNALI1 (ENSPSNG00000018223) #19	GNL2 (ENSPSNG00000018313) #18
Dolphin	MODERN SPECIES	740								CLSPN (ENSTTRG00000015081)	AGO4 (ENSTTRG00000015086)	AGO1 (ENSTTRG00000015088)	AGO3 (ENSTTRG00000015092)	TEKT2 (ENSTTRG00000015093)	ADPRS (ENSTTRG00000015096)	COL8A2 (ENSTTRG00000015097)	TRAPPC3 (ENSTTRG00000015098)	MAP7D1 (ENSTTRG00000015100) #22	THRAP3 (ENSTTRG00000015101) #23
Sperm whale	MODERN SPECIES	192															TRAPPC3 (ENSPCTG00005019743)	MAP7D1 (ENSPCTG00005019665) #22
Blue whale	MODERN SPECIES		ZMYM4 (ENSBMSG00010000862)	KIAA0319L (ENSBMSG00010000897)	NCDN (ENSBMSG00010000921)	TFAP2E (ENSBMSG00010000953)	PSMB2 (ENSBMSG00010000988)	C1orf216 (ENSBMSG00010001008)	CLSPN (ENSBMSG00010001054)	AGO4 (ENSBMSG00010001125)	AGO1 (ENSBMSG00010001153)	AGO3 (ENSBMSG00010001203)	ENSBMSG00010001236	TEKT2 (ENSBMSG00010001253)	ADPRS (ENSBMSG00010001262)	COL8A2 (ENSBMSG00010001272)	TRAPPC3 (ENSBMSG00010001294)	MAP7D1 (ENSBMSG00010001348) #22	THRAP3 (ENSBMSG00010001398) #23	EVA1B (ENSBMSG00010001412) ##25	STK40 (ENSBMSG00010001425) #26	ENSBMSG00010001447	OSCP1 (ENSBMSG00010001473) #27	MRPS15 (ENSBMSG00010001557) #29	CSF3R (ENSBMSG00010001575) #30	GRIK3 (ENSBMSG00010001634) #31	ZC3H12A (ENSBMSG00010001681) #32	ENSBMSG00010001718	SNIP1 (ENSBMSG00010001754) #20	DNALI1 (ENSBMSG00010001767) #19	GNL2 (ENSBMSG00010001802) #18	RSPO1 (ENSBMSG00010001901) #17	C1orf109 (ENSBMSG00010001923)
Camelidae	ANCESTRAL SPECIES	3	ENSGT00940000157337	ENSGT00940000156221	ENSGT00940000159550	ENSGT00940000157613	ENSGT00390000013601	ENSGT00640000091536	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00390000012030.a	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18	ENSGT00940000158871 #17
Arabian camel	MODERN SPECIES	4	ZMYM1 (ENSCDRG00005021216)	SFPQ (ENSCDRG00005021228)	ZMYM4 (ENSCDRG00005021241)	KIAA0319L (ENSCDRG00005021261)	NCDN (ENSCDRG00005021273)	PSMB2 (ENSCDRG00005021286)	CLSPN (ENSCDRG00005021303)	AGO4 (ENSCDRG00005021335)	AGO1 (ENSCDRG00005006649)	AGO3 (ENSCDRG00005006758)	ENSCDRG00005006892	TEKT2 (ENSCDRG00005007020)	ADPRS (ENSCDRG00005007072)	COL8A2 (ENSCDRG00005007112)	TRAPPC3 (ENSCDRG00005007149)	MAP7D1 (ENSCDRG00005007249) #22	THRAP3 (ENSCDRG00005008001) #23	ENSCDRG00005008118 #24	EVA1B (ENSCDRG00005008175) ##25	STK40 (ENSCDRG00005008254) #26	LSM10 (ENSCDRG00005008343)	OSCP1 (ENSCDRG00005008387) #27	MRPS15 (ENSCDRG00005008579) #29	CSF3R (ENSCDRG00005008687) #30	GRIK3 (ENSCDRG00005008818) #31	ZC3H12A (ENSCDRG00005008948) #32	MEAF6 (ENSCDRG00005009070)	SNIP1 (ENSCDRG00005009364) #20	DNALI1 (ENSCDRG00005009434) #19	GNL2 (ENSCDRG00005009550) #18	RSPO1 (ENSCDRG00005009641) #17
Eulipotyphla	ANCESTRAL SPECIES	1643															ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b #22
Hedgehog	MODERN SPECIES	1853																MAP7D1 (ENSEEUG00000005074) #22
Common shrew	MODERN SPECIES	2756															TRAPPC3 (ENSSARG00000013968)	MAP7D1 (ENSSARG00000013974) #22
Euarchontoglires	ANCESTRAL SPECIES		ENSGT00940000157613	ENSGT00940000168628	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00390000012030.a	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18	ENSGT00940000158871 #17
Primates	ANCESTRAL SPECIES	4	ENSGT00940000159550	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00390000012030.a	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18	ENSGT00940000158871 #17
Haplorrhini	ANCESTRAL SPECIES	1	ENSGT00940000159550	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00390000012030.a	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18	ENSGT00940000158871 #17
Simiiformes	ANCESTRAL SPECIES	3	ENSGT00940000159550	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00390000012030.a	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18	ENSGT00940000158871 #17
Catarrhini	ANCESTRAL SPECIES	3	ENSGT00940000159550	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00390000012030.a	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257.t	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18	ENSGT00940000158871 #17
Hominoidea	ANCESTRAL SPECIES	3	ENSGT00940000159550	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00390000012030.a	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257.t	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18	ENSGT00940000158871 #17
Gibbon	MODERN SPECIES	2	ENSNLEG00000018998	ENSNLEG00000031618	KIAA0319L (ENSNLEG00000011001)	NCDN (ENSNLEG00000011043)	TFAP2E (ENSNLEG00000011088)	PSMB2 (ENSNLEG00000034792)	C1orf216 (ENSNLEG00000035826)	CLSPN (ENSNLEG00000011110)	AGO4 (ENSNLEG00000011125)	AGO1 (ENSNLEG00000011181)	AGO3 (ENSNLEG00000027092)	TEKT2 (ENSNLEG00000011235)	ADPRS (ENSNLEG00000011265)	ENSNLEG00000011300	TRAPPC3 (ENSNLEG00000031818)	ENSNLEG00000011317 #22	THRAP3 (ENSNLEG00000011359) #23	SH3D21 (ENSNLEG00000011391) #24	EVA1B (ENSNLEG00000030121) ##25	STK40 (ENSNLEG00000011406) #26	LSM10 (ENSNLEG00000033754)	OSCP1 (ENSNLEG00000011442) #27	MRPS15 (ENSNLEG00000030022) #29	CSF3R (ENSNLEG00000011482) #30	GRIK3 (ENSNLEG00000011524) #31	ZC3H12A (ENSNLEG00000011545) #32	MEAF6 (ENSNLEG00000011546)	SNIP1 (ENSNLEG00000011577) #20	DNALI1 (ENSNLEG00000011584) #19	GNL2 (ENSNLEG00000011599) #18	RSPO1 (ENSNLEG00000011628) #17
Hominidae	ANCESTRAL SPECIES	3	ENSGT00940000159550	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00390000012030.a	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257.t	ENSGT00940000156553 #20	ENSGT00950000182891.a.a.b.a.a.a.b.a.b.a	ENSGT00390000003012 #19	ENSGT00810000125524 #18
Orangutan	MODERN SPECIES		ZMYM4 (ENSPPYG00000001559)	KIAA0319L (ENSPPYG00000001558)	NCDN (ENSPPYG00000001557)	TFAP2E (ENSPPYG00000001556)	PSMB2 (ENSPPYG00000001555)	C1orf216 (ENSPPYG00000001554)	CLSPN (ENSPPYG00000001553)	AGO4 (ENSPPYG00000001552)	AGO1 (ENSPPYG00000001551)	AGO3 (ENSPPYG00000001550)	ENSPPYG00000040273	TEKT2 (ENSPPYG00000001549)	ADPRS (ENSPPYG00000001548)	COL8A2 (ENSPPYG00000001547)	TRAPPC3 (ENSPPYG00000001546)	MAP7D1 (ENSPPYG00000001545) #22	THRAP3 (ENSPPYG00000001544) #23	SH3D21 (ENSPPYG00000001543) #24	EVA1B (ENSPPYG00000030005) ##25	STK40 (ENSPPYG00000001540) #26	LSM10 (ENSPPYG00000001539)	OSCP1 (ENSPPYG00000001538) #27	MRPS15 (ENSPPYG00000001537) #29	CSF3R (ENSPPYG00000001536) #30	GRIK3 (ENSPPYG00000001535) #31	ZC3H12A (ENSPPYG00000001534) #32	MEAF6 (ENSPPYG00000034713)	SNIP1 (ENSPPYG00000001532) #20	ENSPPYG00000001531	DNALI1 (ENSPPYG00000001530) #19	GNL2 (ENSPPYG00000001529) #18
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	3	ENSGT00940000159550	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00390000012030.a	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257.t	ENSGT00940000156553 #20	ENSGT00950000182891.a.a.b.a.a.a.b.a.b.a	ENSGT00390000003012 #19	ENSGT00810000125524 #18
Gorilla	MODERN SPECIES		ENSGGOG00000023775	KIAA0319L (ENSGGOG00000012068)	NCDN (ENSGGOG00000009754)	TFAP2E (ENSGGOG00000009762)	PSMB2 (ENSGGOG00000009771)	C1orf216 (ENSGGOG00000043887)	CLSPN (ENSGGOG00000005981)	AGO4 (ENSGGOG00000036532)	AGO1 (ENSGGOG00000003316)	AGO3 (ENSGGOG00000036711)	ENSGGOG00000043836	TEKT2 (ENSGGOG00000003766)	ADPRS (ENSGGOG00000003770)	COL8A2 (ENSGGOG00000003772)	TRAPPC3 (ENSGGOG00000004752)	MAP7D1 (ENSGGOG00000003219) #22	THRAP3 (ENSGGOG00000006917) #23	SH3D21 (ENSGGOG00000006931) #24	EVA1B (ENSGGOG00000006937) ##25	STK40 (ENSGGOG00000011597) #26	LSM10 (ENSGGOG00000003556)	OSCP1 (ENSGGOG00000007041) #27	MRPS15 (ENSGGOG00000013565) #29	CSF3R (ENSGGOG00000013573) #30	GRIK3 (ENSGGOG00000011315) #31	ZC3H12A (ENSGGOG00000009268) #32	MEAF6 (ENSGGOG00000017191)	SNIP1 (ENSGGOG00000022697) #20	ENSGGOG00000042544	DNALI1 (ENSGGOG00000007698) #19	GNL2 (ENSGGOG00000007704) #18
Homo/Pan group	ANCESTRAL SPECIES	4	ENSGT00950000183210.d.a.c.b.b.a.b.a	ENSGT00940000159550	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257.t	ENSGT00940000156553 #20	ENSGT00950000182891.a.a.b.a.a.a.b.a.b.a	ENSGT00390000003012 #19	ENSGT00810000125524 #18
Human	MODERN SPECIES		SFPQ (ENSG00000116560)	ZMYM4 (ENSG00000146463)	KIAA0319L (ENSG00000142687)	NCDN (ENSG00000020129)	TFAP2E (ENSG00000116819)	PSMB2 (ENSG00000126067)	C1orf216 (ENSG00000142686)	CLSPN (ENSG00000092853)	AGO4 (ENSG00000134698)	AGO1 (ENSG00000092847)	AGO3 (ENSG00000126070)	TEKT2 (ENSG00000092850)	ADPRS (ENSG00000116863)	COL8A2 (ENSG00000171812)	TRAPPC3 (ENSG00000054116)	MAP7D1 (ENSG00000116871) #22	THRAP3 (ENSG00000054118) #23	SH3D21 (ENSG00000214193) #24	EVA1B (ENSG00000142694) ##25	STK40 (ENSG00000196182) #26	LSM10 (ENSG00000181817)	OSCP1 (ENSG00000116885) #27	MRPS15 (ENSG00000116898) #29	CSF3R (ENSG00000119535) #30	GRIK3 (ENSG00000163873) #31	ZC3H12A (ENSG00000163874) #32	MEAF6 (ENSG00000163875)	SNIP1 (ENSG00000163877) #20	DNALI1 (ENSG00000163879) #19	GNL2 (ENSG00000134697) #18	RSPO1 (ENSG00000169218) #17
Pan	ANCESTRAL SPECIES		ENSGT00950000183210.d.a.c.b.b.a.b.a	ENSGT00940000159550	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257.t	ENSGT00940000156553 #20	ENSGT00950000182891.a.a.b.a.a.a.b.a.b.a	ENSGT00390000003012 #19	ENSGT00810000125524 #18
Bonobo	MODERN SPECIES		ZMYM4 (ENSPPAG00000031498)	ENSPPAG00000043691	KIAA0319L (ENSPPAG00000033357)	NCDN (ENSPPAG00000040334)	TFAP2E (ENSPPAG00000039587)	PSMB2 (ENSPPAG00000043554)	C1orf216 (ENSPPAG00000004841)	CLSPN (ENSPPAG00000029163)	AGO4 (ENSPPAG00000031752)	AGO1 (ENSPPAG00000034838)	AGO3 (ENSPPAG00000031959)	TEKT2 (ENSPPAG00000032256)	ADPRS (ENSPPAG00000041931)	COL8A2 (ENSPPAG00000031750)	TRAPPC3 (ENSPPAG00000041117)	MAP7D1 (ENSPPAG00000039211) #22	THRAP3 (ENSPPAG00000028961) #23	SH3D21 (ENSPPAG00000028393) #24	EVA1B (ENSPPAG00000028458) ##25	STK40 (ENSPPAG00000038002) #26	LSM10 (ENSPPAG00000023465)	OSCP1 (ENSPPAG00000032111) #27	MRPS15 (ENSPPAG00000025884) #29	CSF3R (ENSPPAG00000037401) #30	GRIK3 (ENSPPAG00000029669) #31	ZC3H12A (ENSPPAG00000041054) #32	MEAF6 (ENSPPAG00000028352)	SNIP1 (ENSPPAG00000039865) #20	ENSPPAG00000001093	DNALI1 (ENSPPAG00000032274) #19	GNL2 (ENSPPAG00000001559) #18
Chimpanzee	MODERN SPECIES		SFPQ (ENSPTRG00000000518)	ZMYM4 (ENSPTRG00000000519)	KIAA0319L (ENSPTRG00000000521)	NCDN (ENSPTRG00000000522)	TFAP2E (ENSPTRG00000000523)	PSMB2 (ENSPTRG00000000524)	C1H1orf216 (ENSPTRG00000052130)	CLSPN (ENSPTRG00000000526)	AGO4 (ENSPTRG00000000527)	AGO1 (ENSPTRG00000000528)	AGO3 (ENSPTRG00000000529)	TEKT2 (ENSPTRG00000024371)	ADPRS (ENSPTRG00000000531)	COL8A2 (ENSPTRG00000000532)	TRAPPC3 (ENSPTRG00000000533)	MAP7D1 (ENSPTRG00000000534) #22	THRAP3 (ENSPTRG00000000535) #23	SH3D21 (ENSPTRG00000034515) #24	EVA1B (ENSPTRG00000000537) ##25	STK40 (ENSPTRG00000000538) #26	LSM10 (ENSPTRG00000000539)	OSCP1 (ENSPTRG00000000540) #27	MRPS15 (ENSPTRG00000000541) #29	CSF3R (ENSPTRG00000000542) #30	GRIK3 (ENSPTRG00000000543) #31	ZC3H12A (ENSPTRG00000000544) #32	MEAF6 (ENSPTRG00000047980)	SNIP1 (ENSPTRG00000000547) #20	ENSPTRG00000045895	DNALI1 (ENSPTRG00000000548) #19	GNL2 (ENSPTRG00000000549) #18
Cercopithecidae	ANCESTRAL SPECIES	2	ENSGT00940000159550	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00390000012030.a	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257.t	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18	ENSGT00940000158871 #17
Cercopithecinae	ANCESTRAL SPECIES		ENSGT00940000159550	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00390000012030.a	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00390000001737.d #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257.t	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18	ENSGT00940000158871 #17
Vervet Monkey	MODERN SPECIES	12	KIAA0319L (ENSCSAG00000001084)	NCDN (ENSCSAG00000001085)	TFAP2E (ENSCSAG00000001086)	PSMB2 (ENSCSAG00000001087)	C1orf216 (ENSCSAG00000000132)	ENSCSAG00000001088	ENSCSAG00000001089	AGO4 (ENSCSAG00000001090)	AGO1 (ENSCSAG00000001091)	AGO3 (ENSCSAG00000001092)	ENSCSAG00000000133	TEKT2 (ENSCSAG00000001093)	ADPRS (ENSCSAG00000001094)	COL8A2 (ENSCSAG00000001095)	TRAPPC3 (ENSCSAG00000001096)	MAP7D1 (ENSCSAG00000001097) #22	THRAP3 (ENSCSAG00000001098) #23	SH3D21 (ENSCSAG00000001100) #24	EVA1B (ENSCSAG00000001099) ##25	STK40 (ENSCSAG00000001101) #26	LSM10 (ENSCSAG00000000134)	OSCP1 (ENSCSAG00000001102) #27	MRPS15 (ENSCSAG00000001103) #29	CSF3R (ENSCSAG00000001104) #30	GRIK3 (ENSCSAG00000001105) #31	ZC3H12A (ENSCSAG00000001106) #32	MEAF6 (ENSCSAG00000001107)	SNIP1 (ENSCSAG00000001108) #20	DNALI1 (ENSCSAG00000001109) #19	GNL2 (ENSCSAG00000001110) #18	RSPO1 (ENSCSAG00000001111) #17
Cercopithecinae_a	ANCESTRAL SPECIES		ENSGT00940000159550	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729.d	ENSGT00940000158568	ENSGT00940000155256	ENSGT00390000012030.a	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00390000001737.d #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257.t	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18	ENSGT00940000158871 #17
Macaca	ANCESTRAL SPECIES		ENSGT00940000159550	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729.d	ENSGT00940000158568	ENSGT00940000155256	ENSGT00390000012030.a	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00390000001737.c #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257.t	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18	ENSGT00940000158871 #17
Macaca_a	ANCESTRAL SPECIES		ENSGT00940000159550	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729.c.b	ENSGT00940000158729.c.a	ENSGT00940000158568	ENSGT00940000155256	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00390000001737.d #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257.t	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18	ENSGT00940000158871 #17
Rhesus	MODERN SPECIES		KIAA0319L (ENSMMUG00000019806)	NCDN (ENSMMUG00000019812)	TFAP2E (ENSMMUG00000019815)	PSMB2 (ENSMMUG00000013090)	C1H1orf216 (ENSMMUG00000059270)	CLSPN (ENSMMUG00000010961)	ENSMMUG00000053265	ENSMMUG00000050423	AGO4 (ENSMMUG00000003343)	AGO1 (ENSMMUG00000006251)	AGO3 (ENSMMUG00000006252)	TEKT2 (ENSMMUG00000012028)	ADPRS (ENSMMUG00000050632)	COL8A2 (ENSMMUG00000012031)	TRAPPC3 (ENSMMUG00000022499)	MAP7D1 (ENSMMUG00000022500) #22	THRAP3 (ENSMMUG00000014622) #23	SH3D21 (ENSMMUG00000011688) #24	EVA1B (ENSMMUG00000057604) ##25	STK40 (ENSMMUG00000016212) #26	LSM10 (ENSMMUG00000017338)	OSCP1 (ENSMMUG00000020432) #27	MRPS15 (ENSMMUG00000020433) #29	CSF3R (ENSMMUG00000020434) #30	ENSMMUG00000053885	GRIK3 (ENSMMUG00000009679) #31	ZC3H12A (ENSMMUG00000010323) #32	MEAF6 (ENSMMUG00000010328)	SNIP1 (ENSMMUG00000059855) #20	DNALI1 (ENSMMUG00000008418) #19	GNL2 (ENSMMUG00000008419) #18
Pig-tailed macaque	MODERN SPECIES	217	KIAA0319L (ENSMNEG00000034746)	ENSMNEG00000042114	NCDN (ENSMNEG00000036209)	TFAP2E (ENSMNEG00000026563)	PSMB2 (ENSMNEG00000042680)	C1orf216 (ENSMNEG00000011640)	CLSPN (ENSMNEG00000031665)	AGO4 (ENSMNEG00000037723)	AGO1 (ENSMNEG00000028881)	AGO3 (ENSMNEG00000039518)	ENSMNEG00000022567	TEKT2 (ENSMNEG00000034182)	ADPRS (ENSMNEG00000038272)	COL8A2 (ENSMNEG00000043231)	TRAPPC3 (ENSMNEG00000014589)	MAP7D1 (ENSMNEG00000035413) #22	THRAP3 (ENSMNEG00000018987) #23	SH3D21 (ENSMNEG00000043158) #24	EVA1B (ENSMNEG00000041849) ##25	STK40 (ENSMNEG00000038686) #26	LSM10 (ENSMNEG00000020023)	OSCP1 (ENSMNEG00000043487) #27	MRPS15 (ENSMNEG00000042543) #29	CSF3R (ENSMNEG00000033813) #30	GRIK3 (ENSMNEG00000035057) #31	ZC3H12A (ENSMNEG00000040453) #32	MEAF6 (ENSMNEG00000034129)	SNIP1 (ENSMNEG00000004331) #20	DNALI1 (ENSMNEG00000035462) #19	GNL2 (ENSMNEG00000043438) #18	RSPO1 (ENSMNEG00000034664) #17
Cercopithecinae_b	ANCESTRAL SPECIES	1	ENSGT00940000159550	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729.d	ENSGT00940000158568	ENSGT00940000155256	ENSGT00390000012030.a	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00390000001737.d #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257.t	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18	ENSGT00940000158871 #17
Olive baboon	MODERN SPECIES		KIAA0319L (ENSPANG00000010535)	NCDN (ENSPANG00000017888)	TFAP2E (ENSPANG00000004801)	PSMB2 (ENSPANG00000007342)	ENSPANG00000047679	C1orf216 (ENSPANG00000023261)	CLSPN (ENSPANG00000023877)	AGO4 (ENSPANG00000007232)	AGO1 (ENSPANG00000009060)	AGO3 (ENSPANG00000007682)	ENSPANG00000032150	TEKT2 (ENSPANG00000010534)	ADPRS (ENSPANG00000010533)	COL8A2 (ENSPANG00000011822)	TRAPPC3 (ENSPANG00000013869)	MAP7D1 (ENSPANG00000006397) #22	THRAP3 (ENSPANG00000010532) #23	SH3D21 (ENSPANG00000019295) #24	EVA1B (ENSPANG00000023876) ##25	STK40 (ENSPANG00000026394) #26	LSM10 (ENSPANG00000023172)	OSCP1 (ENSPANG00000009801) #27	ENSPANG00000009486 #29	CSF3R (ENSPANG00000004799) #30	ENSPANG00000002642	GRIK3 (ENSPANG00000005822) #31	ZC3H12A (ENSPANG00000011821) #32	MEAF6 (ENSPANG00000023016)	SNIP1 (ENSPANG00000016943) #20	DNALI1 (ENSPANG00000025521) #19	GNL2 (ENSPANG00000025285) #18
Cercopithecinae_d	ANCESTRAL SPECIES	1	ENSGT00940000159550	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729.d	ENSGT00940000158568	ENSGT00940000155256	ENSGT00390000012030.a	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00390000001737.d #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00950000185476	ENSGT00390000015257.t	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18
Sooty mangabey	MODERN SPECIES	227	ENSCATG00000042306	KIAA0319L (ENSCATG00000043672)	NCDN (ENSCATG00000043234)	TFAP2E (ENSCATG00000032602)	PSMB2 (ENSCATG00000038881)	C1orf216 (ENSCATG00000006919)	CLSPN (ENSCATG00000044080)	AGO4 (ENSCATG00000043421)	AGO1 (ENSCATG00000031521)	AGO3 (ENSCATG00000029748)	ENSCATG00000005617	TEKT2 (ENSCATG00000042764)	ADPRS (ENSCATG00000042745)	COL8A2 (ENSCATG00000032341)	TRAPPC3 (ENSCATG00000041647)	MAP7D1 (ENSCATG00000038724) #22	THRAP3 (ENSCATG00000038343) #23	SH3D21 (ENSCATG00000044150) #24	EVA1B (ENSCATG00000039327) ##25	STK40 (ENSCATG00000039453) #26	LSM10 (ENSCATG00000006589)	OSCP1 (ENSCATG00000038966) #27	ENSCATG00000044771 #29	CSF3R (ENSCATG00000038990) #30	GRIK3 (ENSCATG00000038812) #31	ZC3H12A (ENSCATG00000037700) #32	ENSCATG00000006010	ENSCATG00000037164	SNIP1 (ENSCATG00000039335) #20	DNALI1 (ENSCATG00000037101) #19	GNL2 (ENSCATG00000026503) #18
Drill	MODERN SPECIES	996								AGO4 (ENSMLEG00000039490)	AGO1 (ENSMLEG00000038388)	AGO3 (ENSMLEG00000027912)	ENSMLEG00000006923	TEKT2 (ENSMLEG00000019450)	ADPRS (ENSMLEG00000040472)	COL8A2 (ENSMLEG00000044213)	TRAPPC3 (ENSMLEG00000030351)	MAP7D1 (ENSMLEG00000038403) #22	THRAP3 (ENSMLEG00000028924) #23	SH3D21 (ENSMLEG00000021402) #24	STK40 (ENSMLEG00000029415) #26	LSM10 (ENSMLEG00000025150)	OSCP1 (ENSMLEG00000018880) #27	ENSMLEG00000040975 #29	CSF3R (ENSMLEG00000039105) #30	GRIK3 (ENSMLEG00000031025) #31	ZC3H12A (ENSMLEG00000034570) #32	ENSMLEG00000021493
Rhinopithecus	ANCESTRAL SPECIES	37	ENSGT00950000182960.a.a.a.a.b.rb.v	ENSGT00390000015109	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00390000012030.a	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00390000001737 #29	ENSGT00940000158915 #30
Golden snub-nosed monkey	MODERN SPECIES	880	KIAA0319L (ENSRROG00000033805)	ENSRROG00000033752	NCDN (ENSRROG00000042808)	TFAP2E (ENSRROG00000042239)	PSMB2 (ENSRROG00000029102)	C1orf216 (ENSRROG00000023698)	CLSPN (ENSRROG00000030857)	AGO4 (ENSRROG00000035783)	AGO1 (ENSRROG00000044469)	AGO3 (ENSRROG00000042180)	ENSRROG00000027570	TEKT2 (ENSRROG00000039414)	ADPRS (ENSRROG00000030199)	COL8A2 (ENSRROG00000030627)	TRAPPC3 (ENSRROG00000034420)	MAP7D1 (ENSRROG00000045698) #22	THRAP3 (ENSRROG00000028592) #23	SH3D21 (ENSRROG00000042801) #24	EVA1B (ENSRROG00000034651) ##25	STK40 (ENSRROG00000025639) #26	LSM10 (ENSRROG00000011414)	OSCP1 (ENSRROG00000032439) #27	MRPS15 (ENSRROG00000045410) #29	CSF3R (ENSRROG00000040755) #30	IQCF3 (ENSRROG00000035667)	IQCF2 (ENSRROG00000042169)	IQCF5 (ENSRROG00000011279)	IQCF1 (ENSRROG00000037019)
Black snub-nosed monkey	MODERN SPECIES	766	KIAA0319L (ENSRBIG00000040947)	ENSRBIG00000041273	NCDN (ENSRBIG00000023812)	TFAP2E (ENSRBIG00000038962)	PSMB2 (ENSRBIG00000034620)	C1orf216 (ENSRBIG00000010891)	CLSPN (ENSRBIG00000030748)	AGO4 (ENSRBIG00000040185)	AGO1 (ENSRBIG00000032611)	AGO3 (ENSRBIG00000043774)	ENSRBIG00000006280	TEKT2 (ENSRBIG00000044673)	ADPRS (ENSRBIG00000004132)	COL8A2 (ENSRBIG00000043182)	TRAPPC3 (ENSRBIG00000043692)	MAP7D1 (ENSRBIG00000032601) #22	THRAP3 (ENSRBIG00000031284) #23	SH3D21 (ENSRBIG00000031442) #24	EVA1B (ENSRBIG00000035344) ##25	STK40 (ENSRBIG00000036383) #26	LSM10 (ENSRBIG00000001561)	OSCP1 (ENSRBIG00000032588) #27	MRPS15 (ENSRBIG00000038467) #29	CSF3R (ENSRBIG00000036474) #30
Platyrrhini	ANCESTRAL SPECIES		ENSGT00940000156221.e.a	ENSGT00940000159550	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536.k.a	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364.i	ENSGT00390000004808 #27	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18	ENSGT00940000158871 #17
Cebidae	ANCESTRAL SPECIES	1	ENSGT00940000156221.e.a	ENSGT00940000159550	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536.k.a	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364.i	ENSGT00390000004808 #27	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18	ENSGT00940000158871 #17
Marmoset	MODERN SPECIES	19	SFPQ (ENSCJAG00000001431)	ZMYM4 (ENSCJAG00000001447)	KIAA0319L (ENSCJAG00000001486)	NCDN (ENSCJAG00000001525)	TFAP2E (ENSCJAG00000001531)	PSMB2 (ENSCJAG00000038344)	C1orf216 (ENSCJAG00000044395)	CLSPN (ENSCJAG00000001559)	AGO4 (ENSCJAG00000001610)	AGO1 (ENSCJAG00000032023)	AGO3 (ENSCJAG00000031580)	TEKT2 (ENSCJAG00000001705)	ADPRS (ENSCJAG00000001719)	COL8A2 (ENSCJAG00000046041)	TRAPPC3 (ENSCJAG00000001734)	MAP7D1 (ENSCJAG00000001746) #22	THRAP3 (ENSCJAG00000001754) #23	SH3D21 (ENSCJAG00000001796) #24	EVA1B (ENSCJAG00000001807) ##25	STK40 (ENSCJAG00000001818) #26	LSM10 (ENSCJAG00000044880)	OSCP1 (ENSCJAG00000001826) #27	MRPS15 (ENSCJAG00000001852) #29	CSF3R (ENSCJAG00000001860) #30	GRIK3 (ENSCJAG00000001873) #31	ZC3H12A (ENSCJAG00000056482) #32	MEAF6 (ENSCJAG00000001927)	SNIP1 (ENSCJAG00000001963) #20	DNALI1 (ENSCJAG00000057297) #19	ENSCJAG00000001998 #18	C1orf109 (ENSCJAG00000062886)
Cebidae_a	ANCESTRAL SPECIES		ENSGT00940000156221.e.a	ENSGT00940000159550	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536.k.a	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364.i	ENSGT00390000004808 #27	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257	ENSGT00940000156553.r #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18	ENSGT00940000158871 #17
Bolivian squirrel monkey	MODERN SPECIES	135	ZMYM1 (ENSSBOG00000024618)	ENSSBOG00000024972	ZMYM4 (ENSSBOG00000033026)	KIAA0319L (ENSSBOG00000030468)	NCDN (ENSSBOG00000036150)	TFAP2E (ENSSBOG00000035566)	ENSSBOG00000035339	CLSPN (ENSSBOG00000034344)	AGO4 (ENSSBOG00000026529)	AGO1 (ENSSBOG00000020867)	AGO3 (ENSSBOG00000029981)	TEKT2 (ENSSBOG00000022674)	ADPRS (ENSSBOG00000028837)	COL8A2 (ENSSBOG00000027384)	TRAPPC3 (ENSSBOG00000033429)	MAP7D1 (ENSSBOG00000032444) #22	THRAP3 (ENSSBOG00000029130) #23	SH3D21 (ENSSBOG00000032808) #24	EVA1B (ENSSBOG00000023166) ##25	STK40 (ENSSBOG00000030732) #26	ENSSBOG00000036413	OSCP1 (ENSSBOG00000014944) #27	MRPS15 (ENSSBOG00000034679) #29	CSF3R (ENSSBOG00000029331) #30	ENSSBOG00000025138	ENSSBOG00000032606	GRIK3 (ENSSBOG00000034275) #31	ZC3H12A (ENSSBOG00000028357) #32	MEAF6 (ENSSBOG00000033011)
Capuchin	MODERN SPECIES	277	NCDN (ENSCCAG00000035361)	TFAP2E (ENSCCAG00000014473)	ENSCCAG00000025604	ENSCCAG00000020290	C1orf216 (ENSCCAG00000032404)	ENSCCAG00000032336	CLSPN (ENSCCAG00000020740)	ENSCCAG00000007055	AGO4 (ENSCCAG00000001397)	AGO1 (ENSCCAG00000011823)	AGO3 (ENSCCAG00000034189)	TEKT2 (ENSCCAG00000034337)	ADPRS (ENSCCAG00000029534)	COL8A2 (ENSCCAG00000034498)	TRAPPC3 (ENSCCAG00000016538)	MAP7D1 (ENSCCAG00000023770) #22	THRAP3 (ENSCCAG00000028401) #23	SH3D21 (ENSCCAG00000027849) #24	EVA1B (ENSCCAG00000025930) ##25	STK40 (ENSCCAG00000035718) #26	ENSCCAG00000037064	CEP63 (ENSCCAG00000027864)	KY (ENSCCAG00000017585)	EPHB1 (ENSCCAG00000024853)	PPP2R3A (ENSCCAG00000034294)	MSL2 (ENSCCAG00000018654)	ENSCCAG00000036817
Mas night monkey	MODERN SPECIES	957	ZMYM4 (ENSANAG00000032379)	ENSANAG00000027043	KIAA0319L (ENSANAG00000030578)	NCDN (ENSANAG00000030003)	TFAP2E (ENSANAG00000033962)	PSMB2 (ENSANAG00000034782)	C1orf216 (ENSANAG00000017316)	CLSPN (ENSANAG00000037355)	AGO4 (ENSANAG00000031428)	AGO1 (ENSANAG00000037711)	AGO3 (ENSANAG00000037735)	TEKT2 (ENSANAG00000027050)	ADPRS (ENSANAG00000027244)	COL8A2 (ENSANAG00000030537)	TRAPPC3 (ENSANAG00000029327)	MAP7D1 (ENSANAG00000015395) #22	ENSANAG00000032677	ENSANAG00000024479 #23	SH3D21 (ENSANAG00000028854) #24	EVA1B (ENSANAG00000029581) ##25	STK40 (ENSANAG00000026859) #26	ENSANAG00000018759	OSCP1 (ENSANAG00000026578) #27	MRPS15 (ENSANAG00000024978) #29	CSF3R (ENSANAG00000031691) #30	ENSANAG00000029021	GRIK3 (ENSANAG00000037814) #31	ZC3H12A (ENSANAG00000009908) #32	ENSANAG00000028024	SNIP1 (ENSANAG00000019123) #20	DNALI1 (ENSANAG00000014001) #19
Tarsier	MODERN SPECIES	4773												TEKT2 (ENSTSYG00000000204)	ADPRHL2 (ENSTSYG00000011188)	COL8A2 (ENSTSYG00000035637)	TRAPPC3 (ENSTSYG00000000393)	MAP7D1 (ENSTSYG00000001484) #22	THRAP3 (ENSTSYG00000012214) #23	SH3D21 (ENSTSYG00000035793) #24	STK40 (ENSTSYG00000005872) #26	OSCP1 (ENSTSYG00000010954) #27	CSF3R (ENSTSYG00000007230) #30	GRIK3 (ENSTSYG00000000594) #31
Strepsirrhini	ANCESTRAL SPECIES		ENSGT00940000159550	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729.e	ENSGT00940000158568	ENSGT00940000155256	ENSGT00390000012030.a	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18	ENSGT00940000158871 #17
Lemuriformes	ANCESTRAL SPECIES		ENSGT00940000159550	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729.e	ENSGT00940000158568	ENSGT00940000155256	ENSGT00390000012030.a	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18	ENSGT00940000158871 #17
Mouse lemur	MODERN SPECIES	11	ZMYM4 (ENSMICG00000031294)	KIAA0319L (ENSMICG00000006428)	ENSMICG00000035693	NCDN (ENSMICG00000006440)	TFAP2E (ENSMICG00000046802)	PSMB2 (ENSMICG00000006460)	CLSPN (ENSMICG00000005691)	AGO4 (ENSMICG00000033507)	ENSMICG00000044276	AGO1 (ENSMICG00000016147)	AGO3 (ENSMICG00000016158)	TEKT2 (ENSMICG00000016171)	ADPRS (ENSMICG00000016186)	COL8A2 (ENSMICG00000033642)	TRAPPC3 (ENSMICG00000016250)	MAP7D1 (ENSMICG00000016257) #22	THRAP3 (ENSMICG00000007920) #23	SH3D21 (ENSMICG00000027388) #24	EVA1B (ENSMICG00000044326) ##25	STK40 (ENSMICG00000007931) #26	OSCP1 (ENSMICG00000007944) #27	MRPS15 (ENSMICG00000047526) #29	CSF3R (ENSMICG00000007970) #30	GRIK3 (ENSMICG00000016437) #31	ZC3H12A (ENSMICG00000004790) #32	MEAF6 (ENSMICG00000030115)	SNIP1 (ENSMICG00000044466) #20	DNALI1 (ENSMICG00000011878) #19	ENSMICG00000011884	RSPO1 (ENSMICG00000011909) #17	C1orf109 (ENSMICG00000030638)
Lemuriformes_a	ANCESTRAL SPECIES	58	ENSGT00940000159550	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729.e	ENSGT00940000158568	ENSGT00940000155256	ENSGT00390000012030.a	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31
Coquerels sifaka	MODERN SPECIES	257	ENSPCOG00000006560	ZMYM4 (ENSPCOG00000018590)	KIAA0319L (ENSPCOG00000025777)	NCDN (ENSPCOG00000023262)	TFAP2E (ENSPCOG00000017621)	PSMB2 (ENSPCOG00000024983)	ENSPCOG00000007974	CLSPN (ENSPCOG00000017966)	AGO4 (ENSPCOG00000015935)	AGO1 (ENSPCOG00000022061)	AGO3 (ENSPCOG00000028390)	TEKT2 (ENSPCOG00000026680)	ADPRS (ENSPCOG00000015295)	COL8A2 (ENSPCOG00000018858)	TRAPPC3 (ENSPCOG00000021901)	MAP7D1 (ENSPCOG00000024366) #22	ENSPCOG00000028655	THRAP3 (ENSPCOG00000027521) #23	SH3D21 (ENSPCOG00000013355) #24	EVA1B (ENSPCOG00000022411) ##25	STK40 (ENSPCOG00000024517) #26	OSCP1 (ENSPCOG00000021088) #27	MRPS15 (ENSPCOG00000014731) #29	CSF3R (ENSPCOG00000019162) #30	GRIK3 (ENSPCOG00000025879) #31
Greater bamboo lemur	MODERN SPECIES	1104								AGO4 (ENSPSMG00000008413)	AGO1 (ENSPSMG00000008155)	AGO3 (ENSPSMG00000007852)	ENSPSMG00000007627	TEKT2 (ENSPSMG00000007624)	ADPRS (ENSPSMG00000007612)	COL8A2 (ENSPSMG00000007598)	TRAPPC3 (ENSPSMG00000007582)	MAP7D1 (ENSPSMG00000007504) #22	THRAP3 (ENSPSMG00000007350) #23	SH3D21 (ENSPSMG00000007326) #24	EVA1B (ENSPSMG00000007322) ##25	STK40 (ENSPSMG00000007309) #26	LSM10 (ENSPSMG00000007286)	OSCP1 (ENSPSMG00000007256) #27	MRPS15 (ENSPSMG00000007209) #29	CSF3R (ENSPSMG00000007169) #30	GRIK3 (ENSPSMG00000007001) #31
Bushbaby	MODERN SPECIES	140	ZMYM4 (ENSOGAG00000017019)	KIAA0319L (ENSOGAG00000002092)	NCDN (ENSOGAG00000034366)	TFAP2E (ENSOGAG00000029197)	PSMB2 (ENSOGAG00000002097)	C1orf216 (ENSOGAG00000004230)	CLSPN (ENSOGAG00000004231)	ENSOGAG00000032752	ENSOGAG00000004233	AGO1 (ENSOGAG00000010279)	AGO3 (ENSOGAG00000010290)	TEKT2 (ENSOGAG00000032145)	ADPRS (ENSOGAG00000026312)	COL8A2 (ENSOGAG00000034217)	TRAPPC3 (ENSOGAG00000029810)	MAP7D1 (ENSOGAG00000013476) #22	THRAP3 (ENSOGAG00000002648) #23	ENSOGAG00000028592 #24	EVA1B (ENSOGAG00000025550) ##25	STK40 (ENSOGAG00000002651) #26	LSM10 (ENSOGAG00000002653)	OSCP1 (ENSOGAG00000002654) #27	ENSOGAG00000002656 #29	CSF3R (ENSOGAG00000002660) #30	GRIK3 (ENSOGAG00000002138) #31	ZC3H12A (ENSOGAG00000030940) #32	MEAF6 (ENSOGAG00000006773)	SNIP1 (ENSOGAG00000008634) #20	DNALI1 (ENSOGAG00000008639) #19	GNL2 (ENSOGAG00000008643) #18	RSPO1 (ENSOGAG00000008648) #17
Euarchontoglires_A	ANCESTRAL SPECIES		ENSGT00940000157613	ENSGT00940000168628	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00390000012030.a	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18	ENSGT00940000158871 #17
Tree shrew	MODERN SPECIES	694																ENSTBEG00000009249 #22	TRAPPC3 (ENSTBEG00000001735)
Glires	ANCESTRAL SPECIES		ENSGT00940000157613	ENSGT00940000168628	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00390000012030.a	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18	ENSGT00940000158871 #17
Rodentia	ANCESTRAL SPECIES		ENSGT00940000159550	ENSGT00940000157613	ENSGT00940000168628	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18	ENSGT00940000158871 #17
Rodentia_A	ANCESTRAL SPECIES		ENSGT00940000156221	ENSGT00940000159550	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18	ENSGT00940000158871 #17
Hystricomorpha	ANCESTRAL SPECIES	4	ENSGT00940000156221	ENSGT00940000159550	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18	ENSGT00940000158871 #17
Hystricomorpha_a	ANCESTRAL SPECIES	1	ENSGT00940000156221	ENSGT00940000159550	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18	ENSGT00940000158871 #17
Hystricomorpha_b	ANCESTRAL SPECIES	7	ENSGT00940000156221	ENSGT00940000159550	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18	ENSGT00940000158871 #17
Long-tailed chinchilla	MODERN SPECIES	159	ENSCLAG00000009583	ZMYM4 (ENSCLAG00000009236)	KIAA0319L (ENSCLAG00000012151)	NCDN (ENSCLAG00000008627)	TFAP2E (ENSCLAG00000014043)	PSMB2 (ENSCLAG00000011404)	C1orf216 (ENSCLAG00000014133)	CLSPN (ENSCLAG00000009173)	AGO4 (ENSCLAG00000012097)	AGO1 (ENSCLAG00000011507)	AGO3 (ENSCLAG00000013184)	TEKT2 (ENSCLAG00000011534)	ADPRS (ENSCLAG00000013083)	COL8A2 (ENSCLAG00000007777)	TRAPPC3 (ENSCLAG00000007951)	MAP7D1 (ENSCLAG00000011145) #22	THRAP3 (ENSCLAG00000013043) #23	ENSCLAG00000014941 #24	EVA1B (ENSCLAG00000012665) ##25	STK40 (ENSCLAG00000008274) #26	LSM10 (ENSCLAG00000008633)	OSCP1 (ENSCLAG00000008808) #27	MRPS15 (ENSCLAG00000015562) #29	CSF3R (ENSCLAG00000013775) #30	GRIK3 (ENSCLAG00000012617) #31	ZC3H12A (ENSCLAG00000008722) #32	MEAF6 (ENSCLAG00000011410)	SNIP1 (ENSCLAG00000014140) #20	DNALI1 (ENSCLAG00000014051) #19	GNL2 (ENSCLAG00000012504) #18	RSPO1 (ENSCLAG00000016364) #17
Degu	MODERN SPECIES	171	NCDN (ENSODEG00000006887)	TFAP2E (ENSODEG00000004925)	PSMB2 (ENSODEG00000006435)	ENSODEG00000019417	CLSPN (ENSODEG00000006133)	AGO4 (ENSODEG00000006355)	ENSODEG00000007754	AGO1 (ENSODEG00000005321)	AGO3 (ENSODEG00000005161)	ENSODEG00000019305	ENSODEG00000006322	TEKT2 (ENSODEG00000007150)	ADPRS (ENSODEG00000006213)	ENSODEG00000006340	ENSODEG00000007410	MAP7D1 (ENSODEG00000005198) #22	ENSODEG00000006090 #23	SH3D21 (ENSODEG00000005155) #24	EVA1B (ENSODEG00000006459) ##25	STK40 (ENSODEG00000005380) #26	LSM10 (ENSODEG00000019161)	OSCP1 (ENSODEG00000005227) #27	MRPS15 (ENSODEG00000005390) #29	CSF3R (ENSODEG00000006285) #30	GRIK3 (ENSODEG00000005952) #31	ENSODEG00000019238	ZC3H12A (ENSODEG00000005643) #32	ENSODEG00000007741	SNIP1 (ENSODEG00000005648) #20	DNALI1 (ENSODEG00000006719) #19	ENSODEG00000005679
Guinea pig	MODERN SPECIES	25	ENSCPOG00000015018	ZMYM4 (ENSCPOG00000008336)	KIAA0319L (ENSCPOG00000008350)	NCDN (ENSCPOG00000023962)	TFAP2E (ENSCPOG00000024445)	PSMB2 (ENSCPOG00000036531)	C1orf216 (ENSCPOG00000031562)	ENSCPOG00000011544	AGO4 (ENSCPOG00000011557)	AGO1 (ENSCPOG00000011568)	AGO3 (ENSCPOG00000030524)	TEKT2 (ENSCPOG00000006152)	ADPRS (ENSCPOG00000031369)	COL8A2 (ENSCPOG00000039740)	TRAPPC3 (ENSCPOG00000038851)	MAP7D1 (ENSCPOG00000000559) #22	ENSCPOG00000037255	THRAP3 (ENSCPOG00000015742) #23	EVA1B (ENSCPOG00000020754) ##25	STK40 (ENSCPOG00000027226) #26	LSM10 (ENSCPOG00000039302)	OSCP1 (ENSCPOG00000010874) #27	MRPS15 (ENSCPOG00000010877) #29	CSF3R (ENSCPOG00000010879) #30	GRIK3 (ENSCPOG00000025605) #31	ZC3H12A (ENSCPOG00000011081) #32	MEAF6 (ENSCPOG00000025988)	SNIP1 (ENSCPOG00000011083) #20	DNALI1 (ENSCPOG00000011086) #19	GNL2 (ENSCPOG00000026804) #18	RSPO1 (ENSCPOG00000038977) #17
Naked mole-rat female	MODERN SPECIES	26	ENSHGLG00000048349	KIAA0319L (ENSHGLG00000010433)	NCDN (ENSHGLG00000012088)	TFAP2E (ENSHGLG00000035632)	PSMB2 (ENSHGLG00000039477)	C1orf216 (ENSHGLG00000013004)	ENSHGLG00000039952	CLSPN (ENSHGLG00000013282)	AGO4 (ENSHGLG00000010241)	AGO1 (ENSHGLG00000011540)	AGO3 (ENSHGLG00000012538)	TEKT2 (ENSHGLG00000019203)	ADPRS (ENSHGLG00000018720)	ENSHGLG00000033231	ENSHGLG00000013854	MAP7D1 (ENSHGLG00000014101) #22	THRAP3 (ENSHGLG00000019374) #23	ENSHGLG00000011928	ENSHGLG00000035766 ##25	STK40 (ENSHGLG00000010896) #26	ENSHGLG00000011625	OSCP1 (ENSHGLG00000011822) #27	ENSHGLG00000047064 #29	ENSHGLG00000044262	CSF3R (ENSHGLG00000010743) #30	GRIK3 (ENSHGLG00000011776) #31	ENSHGLG00000046483	ZC3H12A (ENSHGLG00000012808) #32	MEAF6 (ENSHGLG00000013675)	SNIP1 (ENSHGLG00000045104) #20	DNALI1 (ENSHGLG00000012722) #19
Sciuridae	ANCESTRAL SPECIES	3	ENSGT00940000156221	ENSGT00940000159550	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256.f	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18	ENSGT00940000158871 #17
Marmotini	ANCESTRAL SPECIES		ENSGT00940000156221.i	ENSGT00940000159550	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256.f	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18	ENSGT00940000158871 #17
Marmotini_b	ANCESTRAL SPECIES		ENSGT00940000156221.i	ENSGT00940000159550	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256.f	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18	ENSGT00940000158871 #17
Arctic ground squirrel	MODERN SPECIES	120	ENSUPAG00010000666	ZMYM4 (ENSUPAG00010000592)	KIAA0319L (ENSUPAG00010000550)	NCDN (ENSUPAG00010000503)	TFAP2E (ENSUPAG00010000482)	PSMB2 (ENSUPAG00010000458)	C1orf216 (ENSUPAG00010000447)	CLSPN (ENSUPAG00010000278)	AGO4 (ENSUPAG00010000240)	AGO1 (ENSUPAG00010000213)	AGO3 (ENSUPAG00010000133)	TEKT2 (ENSUPAG00010000079)	ADPRS (ENSUPAG00010000029)	COL8A2 (ENSUPAG00010017659)	TRAPPC3 (ENSUPAG00010017653)	MAP7D1 (ENSUPAG00010017568) #22	THRAP3 (ENSUPAG00010017531) #23	SH3D21 (ENSUPAG00010017516) #24	EVA1B (ENSUPAG00010017508) ##25	STK40 (ENSUPAG00010017491) #26	ENSUPAG00010017484	OSCP1 (ENSUPAG00010017454) #27	MRPS15 (ENSUPAG00010017437) #29	CSF3R (ENSUPAG00010017417) #30	GRIK3 (ENSUPAG00010017396) #31	ZC3H12A (ENSUPAG00010017379) #32	MEAF6 (ENSUPAG00010017344)	SNIP1 (ENSUPAG00010017338) #20	DNALI1 (ENSUPAG00010017332) #19	ENSUPAG00010017290	RSPO1 (ENSUPAG00010017283) #17
Squirrel	MODERN SPECIES	74	KIAA0319L (ENSSTOG00000001767)	ENSSTOG00000022215	NCDN (ENSSTOG00000025477)	TFAP2E (ENSSTOG00000001781)	PSMB2 (ENSSTOG00000001795)	ENSSTOG00000025789	C1orf216 (ENSSTOG00000000870)	CLSPN (ENSSTOG00000021294)	AGO4 (ENSSTOG00000004725)	AGO1 (ENSSTOG00000010857)	AGO3 (ENSSTOG00000025904)	TEKT2 (ENSSTOG00000010245)	ADPRS (ENSSTOG00000010251)	COL8A2 (ENSSTOG00000023344)	TRAPPC3 (ENSSTOG00000010270)	MAP7D1 (ENSSTOG00000010274) #22	THRAP3 (ENSSTOG00000000602) #23	EVA1B (ENSSTOG00000023164) ##25	STK40 (ENSSTOG00000027085) #26	LSM10 (ENSSTOG00000000606)	OSCP1 (ENSSTOG00000000607) #27	MRPS15 (ENSSTOG00000000608) #29	CSF3R (ENSSTOG00000000615) #30	GRIK3 (ENSSTOG00000010632) #31	ZC3H12A (ENSSTOG00000026842) #32	MEAF6 (ENSSTOG00000005166)	SNIP1 (ENSSTOG00000025511) #20	DNALI1 (ENSSTOG00000005196) #19	GNL2 (ENSSTOG00000005217) #18	RSPO1 (ENSSTOG00000005254) #17	C1orf109 (ENSSTOG00000000834)
Alpin marmot	MODERN SPECIES	15	ENSMMMG00000008037	ZMYM4 (ENSMMMG00000007967)	KIAA0319L (ENSMMMG00000007937)	NCDN (ENSMMMG00000007929)	TFAP2E (ENSMMMG00000007915)	PSMB2 (ENSMMMG00000007906)	C1orf216 (ENSMMMG00000007900)	CLSPN (ENSMMMG00000007847)	AGO4 (ENSMMMG00000007806)	AGO1 (ENSMMMG00000007780)	AGO3 (ENSMMMG00000007745)	TEKT2 (ENSMMMG00000007715)	ADPRS (ENSMMMG00000007700)	COL8A2 (ENSMMMG00000007686)	TRAPPC3 (ENSMMMG00000007674)	MAP7D1 (ENSMMMG00000006325) #22	THRAP3 (ENSMMMG00000006271) #23	SH3D21 (ENSMMMG00000006222) #24	EVA1B (ENSMMMG00000006211) ##25	STK40 (ENSMMMG00000006181) #26	LSM10 (ENSMMMG00000006179)	ENSMMMG00000006174 #27	MRPS15 (ENSMMMG00000006160) #29	CSF3R (ENSMMMG00000006145) #30	ENSMMMG00000006132	GRIK3 (ENSMMMG00000006114) #31	ZC3H12A (ENSMMMG00000006073) #32	SNIP1 (ENSMMMG00000006068) #20	DNALI1 (ENSMMMG00000006059) #19	GNL2 (ENSMMMG00000006031) #18	RSPO1 (ENSMMMG00000006021) #17
Eurasian red squirrel	MODERN SPECIES		ENSSVLG00005001170	ZMYM4 (ENSSVLG00005001206)	KIAA0319L (ENSSVLG00005001304)	NCDN (ENSSVLG00005001362)	TFAP2E (ENSSVLG00005001387)	PSMB2 (ENSSVLG00005001408)	C1orf216 (ENSSVLG00005001422)	CLSPN (ENSSVLG00005001487)	AGO4 (ENSSVLG00005001696)	AGO1 (ENSSVLG00005001765)	AGO3 (ENSSVLG00005001834)	TEKT2 (ENSSVLG00005001949)	ADPRS (ENSSVLG00005001975)	COL8A2 (ENSSVLG00005001986)	TRAPPC3 (ENSSVLG00005002006)	MAP7D1 (ENSSVLG00005002056) #22	THRAP3 (ENSSVLG00005002113) #23	ENSSVLG00005002147	ENSSVLG00005002157 #24	EVA1B (ENSSVLG00005002184) ##25	STK40 (ENSSVLG00005002214) #26	LSM10 (ENSSVLG00005002235)	OSCP1 (ENSSVLG00005002261) #27	MRPS15 (ENSSVLG00005002313) #29	CSF3R (ENSSVLG00005002340) #30	GRIK3 (ENSSVLG00005002397) #31	ZC3H12A (ENSSVLG00005002445) #32	MEAF6 (ENSSVLG00005002483)	SNIP1 (ENSSVLG00005002539) #20	DNALI1 (ENSSVLG00005002552) #19	GNL2 (ENSSVLG00005002574) #18
Rodentia_B	ANCESTRAL SPECIES		ENSGT00940000159550	ENSGT00940000157613	ENSGT00940000168628	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18	ENSGT00940000158871 #17
Kangaroo rat	MODERN SPECIES	144																ENSDORG00000014136 #22
Myomorpha	ANCESTRAL SPECIES	3	ENSGT00940000159550	ENSGT00940000157613	ENSGT00940000168628	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18	ENSGT00940000158871 #17
Lesser Egyptian jerboa	MODERN SPECIES	117	Sfpq (ENSJJAG00000015633)	Zmym4 (ENSJJAG00000011913)	AU040320 (ENSJJAG00000023709)	Ncdn (ENSJJAG00000012057)	Tfap2e (ENSJJAG00000023486)	ENSJJAG00000015159	5730409E04Rik (ENSJJAG00000009869)	Clspn (ENSJJAG00000023223)	ENSJJAG00000003401	Ago1 (ENSJJAG00000019449)	Ago3 (ENSJJAG00000017436)	Tekt2 (ENSJJAG00000012392)	Adprs (ENSJJAG00000001557)	Col8a2 (ENSJJAG00000010113)	Trappc3 (ENSJJAG00000021017)	Map7d1 (ENSJJAG00000018805) #22	ENSJJAG00000024064 #23	ENSJJAG00000013087 #24	Eva1b (ENSJJAG00000000205) ##25	Stk40 (ENSJJAG00000013773) #26	Oscp1 (ENSJJAG00000023834) #27	Mrps15 (ENSJJAG00000022198) #29	Csf3r (ENSJJAG00000017669) #30	Grik3 (ENSJJAG00000017762) #31	Zc3h12a (ENSJJAG00000004252) #32	ENSJJAG00000013630	ENSJJAG00000000604	Snip1 (ENSJJAG00000023710) #20	Dnali1 (ENSJJAG00000002274) #19	Gnl2 (ENSJJAG00000010798) #18	Rspo1 (ENSJJAG00000001617) #17
Muroidea	ANCESTRAL SPECIES	3	ENSGT00940000159550	ENSGT00940000157613	ENSGT00940000168628	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18	ENSGT00940000158871 #17
Upper Galilee mountains blind mole rat	MODERN SPECIES	775	Zmym4 (ENSNGAG00000004986)	ENSNGAG00000013255	ENSNGAG00000019339	Ncdn (ENSNGAG00000016923)	Tfap2e (ENSNGAG00000020679)	Psmb2 (ENSNGAG00000002741)	5730409E04Rik (ENSNGAG00000004304)	Clspn (ENSNGAG00000017502)	Ago4 (ENSNGAG00000020544)	Ago1 (ENSNGAG00000017448)	Ago3 (ENSNGAG00000012607)	Tekt2 (ENSNGAG00000015353)	Adprs (ENSNGAG00000015743)	Col8a2 (ENSNGAG00000017271)	Trappc3 (ENSNGAG00000017785)	Map7d1 (ENSNGAG00000019773) #22	Thrap3 (ENSNGAG00000010876) #23	Sh3d21 (ENSNGAG00000013731) #24	Eva1b (ENSNGAG00000021220) ##25	Stk40 (ENSNGAG00000021449) #26	Lsm10 (ENSNGAG00000015011)	Oscp1 (ENSNGAG00000015958) #27	Mrps15 (ENSNGAG00000018718) #29	Csf3r (ENSNGAG00000020143) #30
Muroidea_A	ANCESTRAL SPECIES	3	ENSGT00940000159550	ENSGT00940000157613	ENSGT00940000168628	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18	ENSGT00940000158871 #17
Murinae	ANCESTRAL SPECIES	2	ENSGT00940000156221	ENSGT00940000159550	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18	ENSGT00940000158871 #17
Mus	ANCESTRAL SPECIES	3	ENSGT00940000156221	ENSGT00940000159550	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18	ENSGT00940000158871 #17
Mus_A	ANCESTRAL SPECIES	3	ENSGT00940000156221	ENSGT00940000159550	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a.f #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18	ENSGT00940000158871 #17
Mus_B	ANCESTRAL SPECIES	5	ENSGT00940000156221	ENSGT00940000159550	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a.f #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18	ENSGT00940000158871 #17
Mus_C	ANCESTRAL SPECIES	2	ENSGT00940000156221	ENSGT00940000159550	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a.f #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18	ENSGT00940000158871 #17
spretus	MODERN SPECIES	13	Sfpq (MGP_SPRETEiJ_G0027466)	Zmym4 (MGP_SPRETEiJ_G0027465)	AU040320 (MGP_SPRETEiJ_G0027464)	Ncdn (MGP_SPRETEiJ_G0027463)	Tfap2e (MGP_SPRETEiJ_G0027462)	Psmb2 (MGP_SPRETEiJ_G0027461)	5730409E04Rik (MGP_SPRETEiJ_G0027460)	Clspn (MGP_SPRETEiJ_G0027459)	Ago4 (MGP_SPRETEiJ_G0027458)	Ago1 (MGP_SPRETEiJ_G0027457)	Ago3 (MGP_SPRETEiJ_G0027456)	Tekt2 (MGP_SPRETEiJ_G0027455)	Adprs (MGP_SPRETEiJ_G0027454)	Col8a2 (MGP_SPRETEiJ_G0027453)	Trappc3 (MGP_SPRETEiJ_G0027452)	Map7d1 (MGP_SPRETEiJ_G0027451) #22	Thrap3 (MGP_SPRETEiJ_G0027450) #23	Sh3d21 (MGP_SPRETEiJ_G0027449) #24	Eva1b (MGP_SPRETEiJ_G0027448) ##25	Stk40 (MGP_SPRETEiJ_G0027447) #26	Lsm10 (MGP_SPRETEiJ_G0027446)	Oscp1 (MGP_SPRETEiJ_G0027445) #27	Mrps15 (MGP_SPRETEiJ_G0027444) #29	Csf3r (MGP_SPRETEiJ_G0027443) #30	Grik3 (MGP_SPRETEiJ_G0027442) #31	Zc3h12a (MGP_SPRETEiJ_G0027441) #32	Meaf6 (MGP_SPRETEiJ_G0027440)	Snip1 (MGP_SPRETEiJ_G0027439) #20	Dnali1 (MGP_SPRETEiJ_G0027438) #19	Gnl2 (MGP_SPRETEiJ_G0027437) #18	Rspo1 (MGP_SPRETEiJ_G0027436) #17
Steppe mouse	MODERN SPECIES	3362	AU040320 (ENSMSIG00000016743)	Ncdn (ENSMSIG00000016728)	Tfap2e (ENSMSIG00000016711)	Psmb2 (ENSMSIG00000016704)	ENSMSIG00000016700	5730409E04Rik (ENSMSIG00000016696)	ENSMSIG00000016695	Clspn (ENSMSIG00000016630)	Ago4 (ENSMSIG00000016601)	Ago1 (ENSMSIG00000016559)	Ago3 (ENSMSIG00000016468)	Tekt2 (ENSMSIG00000016431)	Adprs (ENSMSIG00000016412)	Col8a2 (ENSMSIG00000016393)	Trappc3 (ENSMSIG00000016379)	Map7d1 (ENSMSIG00000016217) #22	Thrap3 (ENSMSIG00000016164) #23	Sh3d21 (ENSMSIG00000016082) #24	Eva1b (ENSMSIG00000016045) ##25	Stk40 (ENSMSIG00000016008) #26	Lsm10 (ENSMSIG00000016001)	Oscp1 (ENSMSIG00000015894) #27	Mrps15 (ENSMSIG00000015874) #29	Csf3r (ENSMSIG00000015810) #30	Grik3 (ENSMSIG00000015725) #31	Zc3h12a (ENSMSIG00000015699) #32	Meaf6 (ENSMSIG00000015611)	Snip1 (ENSMSIG00000015594) #20	ENSMSIG00000015561 #19	Gnl2 (ENSMSIG00000015516) #18	Rspo1 (ENSMSIG00000015498) #17
Mouse	MODERN SPECIES	13	Sfpq (ENSMUSG00000028820)	Zmym4 (ENSMUSG00000042446)	AU040320 (ENSMUSG00000028830)	Ncdn (ENSMUSG00000028833)	Tfap2e (ENSMUSG00000042477)	Psmb2 (ENSMUSG00000028837)	5730409E04Rik (ENSMUSG00000073755)	Clspn (ENSMUSG00000042489)	Ago4 (ENSMUSG00000042500)	Ago1 (ENSMUSG00000041530)	Ago3 (ENSMUSG00000028842)	Tekt2 (ENSMUSG00000028845)	Adprs (ENSMUSG00000042558)	Col8a2 (ENSMUSG00000056174)	Trappc3 (ENSMUSG00000028847)	Map7d1 (ENSMUSG00000028849) #22	Thrap3 (ENSMUSG00000043962) #23	Sh3d21 (ENSMUSG00000073758) #24	Eva1b (ENSMUSG00000050212) ##25	Stk40 (ENSMUSG00000042608) #26	Lsm10 (ENSMUSG00000050188)	Oscp1 (ENSMUSG00000042616) #27	Mrps15 (ENSMUSG00000028861) #29	Csf3r (ENSMUSG00000028859) #30	Grik3 (ENSMUSG00000001985) #31	Zc3h12a (ENSMUSG00000042677) #32	Meaf6 (ENSMUSG00000028863)	Snip1 (ENSMUSG00000050213) #20	Dnali1 (ENSMUSG00000042707) #19	Gnl2 (ENSMUSG00000028869) #18	Rspo1 (ENSMUSG00000028871) #17
Ryukyu mouse	MODERN SPECIES	13	Sfpq (MGP_CAROLIEiJ_G0026487)	Zmym4 (MGP_CAROLIEiJ_G0026486)	AU040320 (MGP_CAROLIEiJ_G0026485)	Ncdn (MGP_CAROLIEiJ_G0026484)	Tfap2e (MGP_CAROLIEiJ_G0026483)	Psmb2 (MGP_CAROLIEiJ_G0026482)	5730409E04Rik (MGP_CAROLIEiJ_G0026481)	MGP_CAROLIEiJ_G0026480	Ago4 (MGP_CAROLIEiJ_G0026479)	Ago1 (MGP_CAROLIEiJ_G0026478)	Ago3 (MGP_CAROLIEiJ_G0026477)	Tekt2 (MGP_CAROLIEiJ_G0026476)	Adprs (MGP_CAROLIEiJ_G0026475)	Col8a2 (MGP_CAROLIEiJ_G0026474)	Trappc3 (MGP_CAROLIEiJ_G0026473)	Map7d1 (MGP_CAROLIEiJ_G0026472) #22	MGP_CAROLIEiJ_G0026471 #23	Sh3d21 (MGP_CAROLIEiJ_G0026470) #24	Eva1b (MGP_CAROLIEiJ_G0026469) ##25	Stk40 (MGP_CAROLIEiJ_G0026468) #26	Lsm10 (MGP_CAROLIEiJ_G0026467)	Oscp1 (MGP_CAROLIEiJ_G0026466) #27	Mrps15 (MGP_CAROLIEiJ_G0026465) #29	Csf3r (MGP_CAROLIEiJ_G0026464) #30	Grik3 (MGP_CAROLIEiJ_G0026463) #31	Zc3h12a (MGP_CAROLIEiJ_G0026462) #32	Meaf6 (MGP_CAROLIEiJ_G0026461)	Snip1 (MGP_CAROLIEiJ_G0026460) #20	Dnali1 (MGP_CAROLIEiJ_G0026459) #19	Gnl2 (MGP_CAROLIEiJ_G0026458) #18	Rspo1 (MGP_CAROLIEiJ_G0026457) #17
Shrew mouse	MODERN SPECIES	19	Sfpq (MGP_PahariEiJ_G0028818)	Zmym4 (MGP_PahariEiJ_G0028817)	AU040320 (MGP_PahariEiJ_G0028816)	Ncdn (MGP_PahariEiJ_G0028815)	Tfap2e (MGP_PahariEiJ_G0028814)	Psmb2 (MGP_PahariEiJ_G0028813)	5730409E04Rik (MGP_PahariEiJ_G0028812)	Clspn (MGP_PahariEiJ_G0028811)	Ago4 (MGP_PahariEiJ_G0028810)	Ago1 (MGP_PahariEiJ_G0028809)	Ago3 (MGP_PahariEiJ_G0028808)	Tekt2 (MGP_PahariEiJ_G0028807)	Adprs (MGP_PahariEiJ_G0028806)	Col8a2 (MGP_PahariEiJ_G0028805)	Trappc3 (MGP_PahariEiJ_G0028804)	Map7d1 (MGP_PahariEiJ_G0028803) #22	MGP_PahariEiJ_G0028802 #23	MGP_PahariEiJ_G0028801 #24	Eva1b (MGP_PahariEiJ_G0028800) ##25	Stk40 (MGP_PahariEiJ_G0028799) #26	Lsm10 (MGP_PahariEiJ_G0028798)	Oscp1 (MGP_PahariEiJ_G0028797) #27	Mrps15 (MGP_PahariEiJ_G0028796) #29	Csf3r (MGP_PahariEiJ_G0028795) #30	Grik3 (MGP_PahariEiJ_G0028794) #31	Zc3h12a (MGP_PahariEiJ_G0028793) #32	Meaf6 (MGP_PahariEiJ_G0028792)	Snip1 (MGP_PahariEiJ_G0028791) #20	Dnali1 (MGP_PahariEiJ_G0028790) #19	Gnl2 (MGP_PahariEiJ_G0028789) #18	Rspo1 (MGP_PahariEiJ_G0028788) #17
Rat	MODERN SPECIES	15	AABR07049918.1 (ENSRNOG00000029310)	Zmym4 (ENSRNOG00000012397)	LOC100294508 (ENSRNOG00000012204)	Ncdn (ENSRNOG00000011751)	Tfap2e (ENSRNOG00000027595)	Psmb2 (ENSRNOG00000011463)	RGD1563072 (ENSRNOG00000021609)	Clspn (ENSRNOG00000011332)	Ago4 (ENSRNOG00000025596)	Ago1 (ENSRNOG00000055915)	Ago3 (ENSRNOG00000034269)	Tekt2 (ENSRNOG00000011033)	Adprs (ENSRNOG00000010849)	Col8a2 (ENSRNOG00000010841)	Trappc3 (ENSRNOG00000010550)	Map7d1 (ENSRNOG00000010237) #22	Thrap3 (ENSRNOG00000009977) #23	Sh3d21 (ENSRNOG00000024566) #24	Eva1b (ENSRNOG00000024818) ##25	Stk40 (ENSRNOG00000025679) #26	Lsm10 (ENSRNOG00000068296)	Oscp1 (ENSRNOG00000026978) #27	Mrps15 (ENSRNOG00000008279) #29	Csf3r (ENSRNOG00000008759) #30	ENSRNOG00000063670	Grik3 (ENSRNOG00000008992) #31	Zc3h12a (ENSRNOG00000009131) #32	Meaf6 (ENSRNOG00000009309)	Snip1 (ENSRNOG00000024889) #20	Dnali1 (ENSRNOG00000024957) #19	Gnl2 (ENSRNOG00000009430) #18
Cricetidae	ANCESTRAL SPECIES	2	ENSGT00940000159550	ENSGT00940000157613	ENSGT00940000168628	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18	ENSGT00940000158871 #17
Cricetidae_B	ANCESTRAL SPECIES	2	ENSGT00940000159550	ENSGT00940000157613	ENSGT00940000168628	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18	ENSGT00940000158871 #17
Prairie vole	MODERN SPECIES	1	Zmym4 (ENSMOCG00000000547)	ENSMOCG00000003001	ENSMOCG00000010938	Ncdn (ENSMOCG00000002663)	Tfap2e (ENSMOCG00000008257)	ENSMOCG00000003664	5730409E04Rik (ENSMOCG00000007468)	Clspn (ENSMOCG00000018907)	Ago4 (ENSMOCG00000005772)	Ago1 (ENSMOCG00000000537)	Ago3 (ENSMOCG00000020568)	Tekt2 (ENSMOCG00000017440)	Adprs (ENSMOCG00000019508)	Col8a2 (ENSMOCG00000012957)	Trappc3 (ENSMOCG00000013847)	Map7d1 (ENSMOCG00000019568) #22	ENSMOCG00000005500 #23	ENSMOCG00000015795	Eva1b (ENSMOCG00000017606) ##25	Stk40 (ENSMOCG00000019033) #26	Lsm10 (ENSMOCG00000021943)	Oscp1 (ENSMOCG00000001484) #27	Mrps15 (ENSMOCG00000004474) #29	Csf3r (ENSMOCG00000015592) #30	Grik3 (ENSMOCG00000009075) #31	ENSMOCG00000009417	Zc3h12a (ENSMOCG00000001899) #32	Meaf6 (ENSMOCG00000019012)	Snip1 (ENSMOCG00000008716) #20	Dnali1 (ENSMOCG00000003328) #19	Gnl2 (ENSMOCG00000016365) #18
Northern American deer mouse	MODERN SPECIES	11	Sfpq (ENSPEMG00000009794)	Zmym4 (ENSPEMG00000022163)	AU040320 (ENSPEMG00000004246)	Ncdn (ENSPEMG00000013918)	Tfap2e (ENSPEMG00000023893)	Psmb2 (ENSPEMG00000001295)	5730409E04Rik (ENSPEMG00000029022)	Clspn (ENSPEMG00000024140)	ENSPEMG00000022651	Ago1 (ENSPEMG00000023313)	Ago3 (ENSPEMG00000024271)	Tekt2 (ENSPEMG00000007126)	Adprs (ENSPEMG00000015344)	Col8a2 (ENSPEMG00000030728)	Trappc3 (ENSPEMG00000017774)	Map7d1 (ENSPEMG00000018714) #22	Thrap3 (ENSPEMG00000023512) #23	Sh3d21 (ENSPEMG00000022518) #24	Eva1b (ENSPEMG00000017056) ##25	Stk40 (ENSPEMG00000010968) #26	Lsm10 (ENSPEMG00000029690)	Oscp1 (ENSPEMG00000021248) #27	Mrps15 (ENSPEMG00000022897) #29	Csf3r (ENSPEMG00000021902) #30	Grik3 (ENSPEMG00000020816) #31	Zc3h12a (ENSPEMG00000024080) #32	Meaf6 (ENSPEMG00000023877)	Snip1 (ENSPEMG00000021090) #20	Dnali1 (ENSPEMG00000020987) #19	Gnl2 (ENSPEMG00000021234) #18	Rspo1 (ENSPEMG00000021279) #17
Cricetinae	ANCESTRAL SPECIES	5	ENSGT00940000156221	ENSGT00940000159550	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000160627 #24	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b.e #26	ENSGT00950000182986.b.f #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18
Golden Hamster	MODERN SPECIES	783							5730409E04Rik (ENSMAUG00000019105)	Clspn (ENSMAUG00000016563)	Ago4 (ENSMAUG00000021743)	Ago1 (ENSMAUG00000015189)	Ago3 (ENSMAUG00000010128)	Tekt2 (ENSMAUG00000011830)	Adprs (ENSMAUG00000017195)	Col8a2 (ENSMAUG00000000665)	Trappc3 (ENSMAUG00000019950)	ENSMAUG00000016543 #22	Thrap3 (ENSMAUG00000019723) #23	Sh3d21 (ENSMAUG00000014506) #24	Eva1b (ENSMAUG00000010494) ##25	Stk40 (ENSMAUG00000014659) #26	Oscp1 (ENSMAUG00000004945) #27	Mrps15 (ENSMAUG00000021202) #29	Csf3r (ENSMAUG00000001404) #30	Grik3 (ENSMAUG00000018300) #31	Zc3h12a (ENSMAUG00000012893) #32	Meaf6 (ENSMAUG00000009391)	Snip1 (ENSMAUG00000015995) #20	Dnali1 (ENSMAUG00000008689) #19	Gnl2 (ENSMAUG00000018529) #18	Rspo1 (ENSMAUG00000017138) #17	9930104L06Rik (ENSMAUG00000001306)
Chinese hamster chok1gshd	MODERN SPECIES	111	AU040320 (ENSCGRG00001012798)	Ncdn (ENSCGRG00001016309)	Tfap2e (ENSCGRG00001004504)	Psmb2 (ENSCGRG00001009469)	ENSCGRG00001003912	5730409E04Rik (ENSCGRG00001001609)	Clspn (ENSCGRG00001014483)	Ago4 (ENSCGRG00001002701)	Ago1 (ENSCGRG00001022708)	Ago3 (ENSCGRG00001024614)	Tekt2 (ENSCGRG00001021518)	Adprs (ENSCGRG00001023363)	Col8a2 (ENSCGRG00001019144)	ENSCGRG00001020476	Trappc3 (ENSCGRG00001020776)	Map7d1 (ENSCGRG00001022850) #22	Thrap3 (ENSCGRG00001003105) #23	Sh3d21 (ENSCGRG00001013521) #24	Eva1b (ENSCGRG00001016486) ##25	ENSCGRG00001000587 #26	ENSCGRG00001004317	Oscp1 (ENSCGRG00001012967) #27	Mrps15 (ENSCGRG00001019050) #29	Csf3r (ENSCGRG00001021810) #30	Grik3 (ENSCGRG00001012192) #31	Zc3h12a (ENSCGRG00001015497) #32	Meaf6 (ENSCGRG00001006760)	Snip1 (ENSCGRG00001010414) #20	Dnali1 (ENSCGRG00001012511) #19	Gnl2 (ENSCGRG00001016733) #18	Rspo1 (ENSCGRG00001017490) #17
Lagomorpha	ANCESTRAL SPECIES	36	ENSGT00940000159550	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00390000012030.a	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000160627 #24	ENSGT00940000168963	ENSGT00940000154096.b.b.b.b.a ##25	ENSGT00950000182986.b #26	ENSGT00510000048364	ENSGT00390000004808 #27	ENSGT00390000001737 #29	ENSGT00940000158915 #30	ENSGT00940000159465 #31	ENSGT00940000155107.a.a #32	ENSGT00390000015257	ENSGT00940000156553 #20	ENSGT00390000003012 #19	ENSGT00810000125524 #18
Pika	MODERN SPECIES	5162												TEKT2 (ENSOPRG00000013852)	ADPRS (ENSOPRG00000013870)	COL8A2 (ENSOPRG00000013887)	TRAPPC3 (ENSOPRG00000013890)	ENSOPRG00000013899 #22
Rabbit	MODERN SPECIES	437	NCDN (ENSOCUG00000013183)	TFAP2E (ENSOCUG00000013190)	PSMB2 (ENSOCUG00000013198)	C1orf216 (ENSOCUG00000009123)	CLSPN (ENSOCUG00000017387)	AGO4 (ENSOCUG00000004076)	ENSOCUG00000008679	AGO1 (ENSOCUG00000023116)	AGO3 (ENSOCUG00000006255)	ENSOCUG00000035817	ENSOCUG00000027798	TEKT2 (ENSOCUG00000029722)	ADPRS (ENSOCUG00000011038)	COL8A2 (ENSOCUG00000011042)	TRAPPC3 (ENSOCUG00000011044)	MAP7D1 (ENSOCUG00000001551) #22	THRAP3 (ENSOCUG00000005323) #23	ENSOCUG00000003260 #24	ENSOCUG00000002287 ##25	STK40 (ENSOCUG00000005325) #26	OSCP1 (ENSOCUG00000005337) #27	MRPS15 (ENSOCUG00000005675) #29	CSF3R (ENSOCUG00000011231) #30	GRIK3 (ENSOCUG00000005581) #31	ZC3H12A (ENSOCUG00000010856) #32	MEAF6 (ENSOCUG00000010862)	SNIP1 (ENSOCUG00000010867) #20	DNALI1 (ENSOCUG00000010871) #19	GNL2 (ENSOCUG00000010877) #18	ENSOCUG00000010888 #17	ENSOCUG00000021550
Platypus	MODERN SPECIES	7	SFPQ (ENSOANG00000047356)	ZMYM4 (ENSOANG00000010569)	ENSOANG00000049345	ENSOANG00000010567	NCDN (ENSOANG00000047629)	TFAP2E (ENSOANG00000013427)	PSMB2 (ENSOANG00000013424)	ENSOANG00000002084	AGO4 (ENSOANG00000002082)	AGO1 (ENSOANG00000002080)	AGO3 (ENSOANG00000002078)	TEKT2 (ENSOANG00000002075)	ADPRS (ENSOANG00000038562)	ENSOANG00000050098	TRAPPC3 (ENSOANG00000002072)	MAP7D1 (ENSOANG00000036062) #22	THRAP3 (ENSOANG00000002070) #23	EVA1B (ENSOANG00000038945) ##25	STK40 (ENSOANG00000002067) #26	ENSOANG00000042771	OSCP1 (ENSOANG00000002064) #27	MRPS15 (ENSOANG00000042130) #29	ENSOANG00000002062 #30	GRIK3 (ENSOANG00000002061) #31	ZC3H12A (ENSOANG00000002060) #32	MEAF6 (ENSOANG00000002059)	SNIP1 (ENSOANG00000036482) #20	DNALI1 (ENSOANG00000002058) #19	GNL2 (ENSOANG00000002057) #18	RSPO1 (ENSOANG00000002054) #17	ENSOANG00000002053
Anura	ANCESTRAL SPECIES	132	ENSGT00940000159550	ENSGT00940000157613	ENSGT00390000013601	ENSGT00950000182848.c.b.b.a	ENSGT00640000091536	ENSGT00390000001867	ENSGT00390000012738	ENSGT00940000158729	ENSGT00940000158568	ENSGT00940000155256	ENSGT00950000182894.D	ENSGT00390000015369	ENSGT00940000154317.a.a	ENSGT00390000003880.b.a	ENSGT00940000164972	ENSGT00950000182941.a.a.b #22	ENSGT00950000183163.a.a #23	ENSGT00940000160627 #24	ENSGT00940000158915 #30	ENSGT00390000001737 #29	ENSGT00390000004808 #27	ENSGT00510000048364	ENSGT00950000182986.b #26	ENSGT00940000154096.b.b.b.b.b #25
Leishan spiny toad	MODERN SPECIES	5	SNIP1 (ENSLLEG00000002127) #20	ENSLLEG00000002120	ENSLLEG00000002106	RSPO1 (ENSLLEG00000002099) #17	GNL2 (ENSLLEG00000001992) #18	ENSLLEG00000001946	ENSLLEG00000001934	ENSLLEG00000001930	ENSLLEG00000001896	ENSLLEG00000001882	COL8A2 (ENSLLEG00000001867)	TRAPPC3 (ENSLLEG00000001844)	ENSLLEG00000001831	ENSLLEG00000001791	ENSLLEG00000001767	MAP7D1 (ENSLLEG00000001739) #22	ENSLLEG00000001718	THRAP3 (ENSLLEG00000001669) #23	ENSLLEG00000001645	ENSLLEG00000001593 #24	ENSLLEG00000001571	CSF3R (ENSLLEG00000001535) #30	MRPS15 (ENSLLEG00000001489) #29	OSCP1 (ENSLLEG00000001452) #27	ENSLLEG00000001440	LSM10 (ENSLLEG00000001424)	STK40 (ENSLLEG00000001376) #26	ENSLLEG00000001354 #25	ENSLLEG00000001334	ENSLLEG00000001308	ENSLLEG00000001154
Frog	MODERN SPECIES	2	zmym4 (ENSXETG00000009675)	kiaa0319l (ENSXETG00000039085)	ncdn (ENSXETG00000009669)	tfap2e (ENSXETG00000027719)	c1orf216 (ENSXETG00000009667)	ago4 (ENSXETG00000009664)	clspn (ENSXETG00000009662)	psmb2 (ENSXETG00000009668)	ago1 (ENSXETG00000004364)	ago3 (ENSXETG00000042716)	tekt2 (ENSXETG00000004373)	adprs (ENSXETG00000004374)	col8a2 (ENSXETG00000004376)	trappc3 (ENSXETG00000004378)	ENSXETG00000004379	map7d1 (ENSXETG00000004382) #22	ENSXETG00000047207	thrap3 (ENSXETG00000003925) #23	sh3d21 (ENSXETG00000030848) #24	csf3r (ENSXETG00000003916) #30	zbtb8b (ENSXETG00000003914)	nipal3 (ENSXETG00000003907)	stpg1 (ENSXETG00000031811)	grhl3 (ENSXETG00000003899)	cyp4f2 (ENSXETG00000027109)	ENSXETG00000037297	ifnlr1 (ENSXETG00000031947)	il22ra1 (ENSXETG00000048975)	myom3 (ENSXETG00000005275)	XB5907626 [provisional:fabp1] (ENSXETG00000005274) #7	srsf10 (ENSXETG00000036317)
Coelacanth	MODERN SPECIES	249	KIAA0319L (ENSLACG00000015470)	NCDN (ENSLACG00000015791)	TFAP2E (ENSLACG00000015883)	PSMB2 (ENSLACG00000016163)	C1orf216 (ENSLACG00000016550)	CLSPN (ENSLACG00000016826)	AGO4 (ENSLACG00000016888)	AGO1 (ENSLACG00000017009)	TEKT2 (ENSLACG00000017301)	ADPRS (ENSLACG00000017349)	ENSLACG00000017370	COL8A2 (ENSLACG00000017396)	TRAPPC3 (ENSLACG00000017830)	angpt2b (ENSLACG00000017925)	ENSLACG00000017969	MAP7D1 (ENSLACG00000018102) #22	THRAP3 (ENSLACG00000018229) #23	ENSLACG00000018225	eva1ba (ENSLACG00000022189) #25	CHD1 (ENSLACG00000018415)	ENSLACG00000018455	RGMB (ENSLACG00000018463)
Elephant shark	MODERN SPECIES	1656														MAP3K6 (ENSCMIG00000013489) #21	ENSCMIG00000013462	ENSCMIG00000013454 #22	THRAP3 (ENSCMIG00000013447) #23	ENSCMIG00000013444 #24	eva1ba (ENSCMIG00000013443) #25	STK40 (ENSCMIG00000013436) #26	LSM10 (ENSCMIG00000013432)	oscp1a (ENSCMIG00000013431) #27	ENSCMIG00000013427	ENSCMIG00000013425 #29	TINAGL1 (ENSCMIG00000013423)	fam49al (ENSCMIG00000013421)	trit1 (ENSCMIG00000013419)	ENSCMIG00000013417	ENSCMIG00000013415	meaf6 (ENSCMIG00000013414)	SNIP1 (ENSCMIG00000013413) #20
Gnathostomata	ANCESTRAL SPECIES	177											ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00940000167949	ENSGT00950000183163.a.b ##23	ENSGT00940000164948	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799
Elephant shark	MODERN SPECIES	1511	tfap2b (ENSCMIG00000016103)	ENSCMIG00000016105	ENSCMIG00000016107	eif2b4 (ENSCMIG00000016132)	snx17 (ENSCMIG00000016186)	ENSCMIG00000016194	ENSCMIG00000016200	TNFAIP3 (ENSCMIG00000016215)	ENSCMIG00000016220	ENSCMIG00000016222	ENSCMIG00000016227	ENSCMIG00000016230	SLC35D3 (ENSCMIG00000016233)	pex7 (ENSCMIG00000016246)	MAP3K5 (ENSCMIG00000016309)	ENSCMIG00000016396 ##22	ENSCMIG00000016427	BCLAF1 (ENSCMIG00000016434) ##23	armc1l (ENSCMIG00000016442)	mtfr2 (ENSCMIG00000016447)	PDE7B (ENSCMIG00000016487)	ENSCMIG00000016541	ahi1 (ENSCMIG00000016547)	hbs1l (ENSCMIG00000016586)	MYB (ENSCMIG00000016702)	ENSCMIG00000016801
Euteleostomi	ANCESTRAL SPECIES	178												ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00940000167949	ENSGT00950000183163.a.b ##23	ENSGT00940000164948	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318
Actinopterygii	ANCESTRAL SPECIES	69		ENSGT00940000156034.a	ENSGT00940000167198	ENSGT00940000160610	ENSGT01090000260082.d.b	ENSGT00390000004172	ENSGT00940000157993	ENSGT00530000063558.B	ENSGT00390000011877	ENSGT00390000013931	ENSGT01030000234626.B	ENSGT00550000074878	ENSGT00940000157723	ENSGT00390000004348	ENSGT00950000182985.b.a	ENSGT00950000182941.a.a.a ##22	ENSGT00940000167949	ENSGT00950000183163.a.b ##23	ENSGT00940000164948	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318
Neopterygii	ANCESTRAL SPECIES	88							ENSGT00940000155086.A	ENSGT00530000063558.B	ENSGT00390000011877	ENSGT00390000013931	ENSGT01030000234626.B	ENSGT00550000074878	ENSGT00940000157723	ENSGT00390000004348	ENSGT00950000182985.b.a	ENSGT00950000182941.a.a.a ##22	ENSGT00940000167949	ENSGT00950000183163.a.b ##23	ENSGT00940000164948	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318
Osteoglossocephalai	DUPLICATION
Osteoglossocephalai	ANCESTRAL SPECIES	183								ENSGT00530000063558.B	ENSGT00390000011877	ENSGT00390000013931	ENSGT01030000234626.B	ENSGT00550000074878	ENSGT00940000157723	ENSGT00390000004348	ENSGT00950000182985.b.a	ENSGT00950000182941.a.a.a.a ##22	ENSGT00950000183163.a.b ##23	ENSGT00940000164948	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318	ENSGT00940000165353	ENSGT00940000159157
Clupeocephala	ANCESTRAL SPECIES	140						ENSGT00940000155086.B	ENSGT00940000166976	ENSGT00530000063558.B	ENSGT00390000011877	ENSGT00390000013931	ENSGT01030000234626.B	ENSGT00550000074878	ENSGT00940000157723	ENSGT00390000004348	ENSGT00950000182985.b.a	ENSGT00950000182941.a.a.a.a ##22	ENSGT00940000164948	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156248	ENSGT00650000094590	ENSGT01080000257573	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318	ENSGT00940000171557
Otomorpha	ANCESTRAL SPECIES	588												ENSGT00550000074878	ENSGT00940000157723.d	ENSGT00390000004348	ENSGT00950000182985.b.a	ENSGT00950000182941.a.a.a.a ##22
Clupeiformes	ANCESTRAL SPECIES																	ENSGT00950000182941.a.a.a.a ##22
Denticle herring	MODERN SPECIES	5	chrm5b (ENSDCDG00000023900)	emc7b (ENSDCDG00000023902)	katnbl1 (ENSDCDG00000023905)	ENSDCDG00000023915	THBS1 (ENSDCDG00000023945)	gpr176 (ENSDCDG00000024126)	acot22 (ENSDCDG00000024127)	susd6 (ENSDCDG00000024129)	srsf5b (ENSDCDG00000024131)	SLC10A1 (ENSDCDG00000024133)	max (ENSDCDG00000024135)	fntb (ENSDCDG00000024156)	rab15 (ENSDCDG00000024219)	sipa1l1 (ENSDCDG00000024277)	rgs6 (ENSDCDG00000025786)	ENSDCDG00000027698 ##22	ENSDCDG00000027703	rock2b (ENSDCDG00000027897)	ENSDCDG00000030573	ENSDCDG00000030575	ENSDCDG00000030580	ENSDCDG00000030630	ENSDCDG00000032476	ENSDCDG00000032477	MPEG1 (ENSDCDG00000032485)	ENSDCDG00000032487	ENSDCDG00000032490	ppil6 (ENSDCDG00000032494)	AK9 (ENSDCDG00000032500)	FIG4 (ENSDCDG00000032519)	GPR6 (ENSDCDG00000032549) ##9
Atlantic herring	MODERN SPECIES	6	elovl4b (ENSCHAG00000000881)	tent5ab (ENSCHAG00000000951)	PRSS35 (ENSCHAG00000000988)	ENSCHAG00000001038	smek1 (ENSCHAG00000001226)	ENSCHAG00000001796	mycn (ENSCHAG00000001824)	DDX1 (ENSCHAG00000002054)	nbas (ENSCHAG00000002963)	ENSCHAG00000009503	ENSCHAG00000009542	ENSCHAG00000009549	sec63 (ENSCHAG00000009562)	usta (ENSCHAG00000009716)	slc22a16 (ENSCHAG00000009782)	ENSCHAG00000009810 ##22	mrap2b (ENSCHAG00000009824)	ENSCHAG00000009825	ENSCHAG00000009840	ENSCHAG00000009966	rock2b (ENSCHAG00000009986)	ENSCHAG00000010064	ENSCHAG00000010148	ENSCHAG00000011117	ENSCHAG00000011124	paplnb (ENSCHAG00000011135)	ENSCHAG00000011201	kcnf1a (ENSCHAG00000011462)	ENSCHAG00000011471	ENSCHAG00000011482	ENSCHAG00000011491
Otophysi	ANCESTRAL SPECIES	396														ENSGT00390000004348	ENSGT00950000182985.b.a	ENSGT00950000182941.a.a.a.a ##22	ENSGT01090000260052.a.b.j	ENSGT00940000154044.a.a.q.a	ENSGT00940000159858	ENSGT00940000154667.b.a
Characiphysae	ANCESTRAL SPECIES	16	ENSGT00940000154417.c	ENSGT00940000176954	ENSGT00940000158938	ENSGT00390000004940.a.b	ENSGT00390000012141.b	ENSGT00940000162826	ENSGT01050000244971.B.b	ENSGT01050000244971.A.d.a.b	ENSGT00390000000911.h.a	ENSGT00390000001206	ENSGT00950000183195.a	ENSGT00940000155851.c.a	ENSGT00950000183117.b	ENSGT00390000004348	ENSGT00950000182985.b.a	ENSGT00950000182941.a.a.a.a ##22	ENSGT01090000260052.a.b.j.d	ENSGT00950000183109.d.e.b	ENSGT00940000155588.a	ENSGT00940000165075.b	ENSGT00530000063713.b.b	ENSGT00940000154895.a.a	ENSGT00940000155694.h	ENSGT00950000182936.a.a.b.b	ENSGT00940000155201.d	ENSGT01100000263512.a.a.b.a	ENSGT00390000008611	ENSGT00940000169945	ENSGT00940000155473.c.a	ENSGT01100000263505.a.a	ENSGT00940000154164.d
Characiphysae_b	ANCESTRAL SPECIES	8	ENSGT00940000154417.c	ENSGT00940000176954	ENSGT00940000158938	ENSGT00390000004940.a.b	ENSGT00390000012141.b	ENSGT00940000162826	ENSGT01050000244971.B.b	ENSGT01050000244971.A.d.a.b	ENSGT00390000000911.h.a	ENSGT00390000001206	ENSGT00950000183195.a	ENSGT00940000155851.c.a	ENSGT00950000183117.b	ENSGT00390000004348	ENSGT00950000182985.b.a	ENSGT00950000182941.a.a.a.a ##22	ENSGT01090000260052.a.b.j.d	ENSGT00950000183109.d.e.b	ENSGT00940000155588.a	ENSGT00940000165075.b	ENSGT00530000063713.b.b	ENSGT00940000154895.a.a	ENSGT00940000155694.h	ENSGT00950000182936.a.a.b.b	ENSGT00940000155201.d	ENSGT01100000263512.a.a.b.a	ENSGT00390000008611	ENSGT00940000169945	ENSGT00940000155473.c.a	ENSGT01100000263505.a.a	ENSGT00940000154164.d
Characoidei	ANCESTRAL SPECIES	8	ENSGT00940000154417.c	ENSGT00940000176954	ENSGT00940000158938	ENSGT00390000004940.a.b	ENSGT00390000012141.b	ENSGT00940000162826	ENSGT01050000244971.B.b	ENSGT01050000244971.A.d.a.b	ENSGT00390000000911.h.a	ENSGT00390000001206	ENSGT00950000183195.a	ENSGT00940000155851.c.a	ENSGT00950000183117.b	ENSGT00390000004348	ENSGT00950000182985.b.a	ENSGT00950000182941.a.a.a.a ##22	ENSGT01090000260052.a.b.j.d	ENSGT00950000183109.d.e.b	ENSGT00940000155588.a	ENSGT00940000165075.b	ENSGT00530000063713.b.b	ENSGT00940000154895.a.a	ENSGT00940000155694.h	ENSGT00950000182936.a.a.b.b	ENSGT00940000155201.d	ENSGT01100000263512.a.a.b.a	ENSGT00390000008611	ENSGT00940000169945	ENSGT00940000155473.c.a	ENSGT01100000263505.a.a	ENSGT00940000154164.d
Red-bellied piranha	MODERN SPECIES	134	ddx19a (ENSPNAG00000022254)	VWA5B1 (ENSPNAG00000022312)	CAMK2N1 (ENSPNAG00000022326)	mul1b (ENSPNAG00000022374)	fam43b (ENSPNAG00000022389)	ENSPNAG00000022398	ENSPNAG00000022405	cdaa (ENSPNAG00000022416)	cdaa (ENSPNAG00000022445)	pink1 (ENSPNAG00000022461)	agmat (ENSPNAG00000022490)	DNAJC16 (ENSPNAG00000022574)	selenoi (ENSPNAG00000022609)	iyd (ENSPNAG00000022631)	ppp1r14c (ENSPNAG00000022649)	ENSPNAG00000022732 ##22	XCR1 (ENSPNAG00000022758)	ENSPNAG00000022806
Channel catfish	MODERN SPECIES	6	ddx19a (ENSIPUG00000022795)	ENSIPUG00000022813	VWA5B1 (ENSIPUG00000022816)	camk2n2 (ENSIPUG00000022831)	mul1 (ENSIPUG00000022833)	fam43b (ENSIPUG00000022841)	ENSIPUG00000022843	ENSIPUG00000022847	cda (ENSIPUG00000022850)	pink1 (ENSIPUG00000000561)	agmat (ENSIPUG00000000576)	DNAJC16 (ENSIPUG00000000579)	EPT1 (ENSIPUG00000000603)	iyd (ENSIPUG00000000621)	Ppp1r14c (ENSIPUG00000000630)	ENSIPUG00000000639 ##22	XCR1 (ENSIPUG00000000649)	XCR1 (ENSIPUG00000000653)	XCR1 (ENSIPUG00000000658)	ENSIPUG00000000661	cyp17a2 (ENSIPUG00000000675)	egr4 (ENSIPUG00000000682)	ENSIPUG00000000694	DCLK2 (ENSIPUG00000000697)	ENSIPUG00000000719	ENSIPUG00000000749	TMEM184C (ENSIPUG00000000753)	ednrab (ENSIPUG00000000765)	ttc29 (ENSIPUG00000000778)	ENSIPUG00000000786	vdr (ENSIPUG00000000797)
Cyprinoidei	ANCESTRAL SPECIES	166														ENSGT00390000004348	ENSGT00950000182985.b.a	ENSGT00950000182941.a.a.a.a ##22	ENSGT01090000260052.a.b.j	ENSGT00940000154044.a.a.q.a	ENSGT00940000159858	ENSGT00940000154667.b.a	ENSGT01050000244939.a.a.b.a.b.c.a.a.a.b	ENSGT01050000244939.a.a.b.a.b.c.a.a.a.a	ENSGT00940000157191.d	ENSGT01050000244838.D.a.b	ENSGT00950000182982.C.c.b	ENSGT00390000000358.z	ENSGT00940000159567.a.b	ENSGT00940000165797	ENSGT00940000160190.a.b.a	ENSGT00940000160862	ENSGT00940000158080
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	3	ENSGT00940000159181.j	ENSGT00940000156230.p.b	ENSGT00940000159686.e	ENSGT00940000158250.d.b.b	ENSGT00940000159117.b	ENSGT00940000156872.c.b	ENSGT00390000005294.a.d	ENSGT00390000016392.i	ENSGT00940000160734.d.a	ENSGT00390000001400.g.a	ENSGT01010000222287.A.c.a	ENSGT00940000168345.b	ENSGT00390000018003.a.k.a	ENSGT00390000004348.a	ENSGT00950000182985.b.a.l	ENSGT00950000182941.a.a.a.a.a ##22	ENSGT01090000260052.a.b.j.e.b.a	ENSGT01090000260052.a.b.j.e.a.b	ENSGT00940000154044.a.a.q.a.a	ENSGT00940000159858.d	ENSGT00940000154667.b.a.c	ENSGT01050000244939.a.a.b.a.b.c.a.a.a.b.a.a	ENSGT01050000244939.a.a.b.a.b.c.a.a.a.a	ENSGT00940000157191.d.d	ENSGT01050000244838.D.a.b.e	ENSGT00950000182982.C.c.b.h	ENSGT00390000000358.z.c	ENSGT00940000159567.a.b.a	ENSGT00940000165797	ENSGT00940000160190.a.b.a.b	ENSGT00940000160862
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	15	ATP9A (ENSCARG00000004044)	NFATC2 (ENSCARG00000004333)	kcng1 (ENSCARG00000004415)	src (ENSCARG00000004450)	mical1 (ENSCARG00000004733)	camk1gb (ENSCARG00000004753)	g0s2 (ENSCARG00000004775)	otud3 (ENSCARG00000004779)	vwa1 (ENSCARG00000004791)	TMCO4 (ENSCARG00000004819)	HTR6 (ENSCARG00000005058)	ENSCARG00000005064	SIKE1 (ENSCARG00000005069)	iyd (ENSCARG00000005077)	ppp1r14c (ENSCARG00000005098)	ENSCARG00000005105 ##22	ENSCARG00000005127 ##22	XCR1 (ENSCARG00000005137)	XCR1 (ENSCARG00000005150)	FYCO1 (ENSCARG00000005171)	ENSCARG00000005231	rnf146 (ENSCARG00000005708)	gpsm2l (ENSCARG00000005743)	ENSCARG00000005861	ENSCARG00000005889	tent5ab (ENSCARG00000006001)	elovl4b (ENSCARG00000006010)	SOGA3 (ENSCARG00000006021)	ENSCARG00000006033	mdp1 (ENSCARG00000006043)	ENSCARG00000006067
Goldfish	MODERN SPECIES	15	NFATC2 (ENSCARG00000004333)	kcng1 (ENSCARG00000004415)	src (ENSCARG00000004450)	mical1 (ENSCARG00000004733)	camk1gb (ENSCARG00000004753)	g0s2 (ENSCARG00000004775)	otud3 (ENSCARG00000004779)	vwa1 (ENSCARG00000004791)	TMCO4 (ENSCARG00000004819)	HTR6 (ENSCARG00000005058)	ENSCARG00000005064	SIKE1 (ENSCARG00000005069)	iyd (ENSCARG00000005077)	ppp1r14c (ENSCARG00000005098)	ENSCARG00000005105 ##22	ENSCARG00000005127 ##22	XCR1 (ENSCARG00000005137)	XCR1 (ENSCARG00000005150)	FYCO1 (ENSCARG00000005171)	ENSCARG00000005231	rnf146 (ENSCARG00000005708)	gpsm2l (ENSCARG00000005743)	ENSCARG00000005861	ENSCARG00000005889	tent5ab (ENSCARG00000006001)	elovl4b (ENSCARG00000006010)	SOGA3 (ENSCARG00000006021)	ENSCARG00000006033	mdp1 (ENSCARG00000006043)	ENSCARG00000006067	ENSCARG00000006122
Cyprininae_a	ANCESTRAL SPECIES	5	ENSGT00940000158250.d.b.b	ENSGT00940000159117.b	ENSGT00940000156872.c.b	ENSGT00390000005294.a.c.a	ENSGT00390000016392.i	ENSGT00940000160734.d.a	ENSGT00390000001400.g.a	ENSGT00940000154484.A	ENSGT00940000168345.b	ENSGT00390000001400.h	ENSGT01010000222287.A.c.b	ENSGT00940000168345.a	ENSGT00390000018003.a.k.a	ENSGT00390000004348.a	ENSGT00950000182985.b.a.l	ENSGT00950000182941.a.a.a.a.a ##22	ENSGT01090000260052.a.b.j.e.b.a	ENSGT01090000260052.a.b.j.e.a.b	ENSGT00940000154044.a.a.q.a.a	ENSGT00940000159858.d	ENSGT00940000154667.b.a.c	ENSGT01050000244939.a.a.b.a.b.c.a.a.a.b.a.a	ENSGT01050000244939.a.a.b.a.b.c.a.a.a.b.b	ENSGT01050000244939.a.a.b.a.b.c.a.a.a.a	ENSGT00940000157191.d.d	ENSGT01050000244838.D.a.b.e	ENSGT00950000182982.C.c.b.h	ENSGT00390000000358.z.c	ENSGT00940000159567.a.b.a	ENSGT00940000165797.e	ENSGT00940000160862
Common carp reference	MODERN SPECIES	49	ENSCCRG00000014078	ATP9A (ENSCCRG00000014167)	NFATC2 (ENSCCRG00000030626)	kcng1 (ENSCCRG00000057175)	src (ENSCCRG00000051450)	mical1 (ENSCCRG00000048326)	camk1gb (ENSCCRG00000048331)	g0s2 (ENSCCRG00000057634)	otud3 (ENSCCRG00000048335)	vwa1 (ENSCCRG00000019732)	ENSCCRG00000048112	ENSCCRG00000078910	ENSCCRG00000024495	iyd (ENSCCRG00000024500)	ppp1r14c (ENSCCRG00000055575)	ENSCCRG00000055201 ##22	ENSCCRG00000080786	ENSCCRG00000071590	ENSCCRG00000002552	ENSCCRG00000041754	gpsm2l (ENSCCRG00000009614)	ENSCCRG00000076064	ENSCCRG00000016190	ENSCCRG00000016196	ENSCCRG00000016557	tent5ab (ENSCCRG00000023270)	elovl4b (ENSCCRG00000065736)	ENSCCRG00000066825	rnf146 (ENSCCRG00000054431)	ENSCCRG00000072109	mdp1 (ENSCCRG00000004603)
Golden-line barbel	MODERN SPECIES	655	NFATC2 (ENSSGRG00000021546)	kcng1 (ENSSGRG00000021544)	src (ENSSGRG00000021524)	ENSSGRG00000021523	mical1 (ENSSGRG00000021390)	ENSSGRG00000021388	g0s2 (ENSSGRG00000021386)	otud3 (ENSSGRG00000021385)	vwa1 (ENSSGRG00000021384)	ENSSGRG00000021383	HTR6 (ENSSGRG00000021371)	ENSSGRG00000021369	SIKE1 (ENSSGRG00000021367)	ENSSGRG00000021365	ppp1r14c (ENSSGRG00000021360)	ENSSGRG00000021355 ##22	XCR1 (ENSSGRG00000021354)	XCR1 (ENSSGRG00000021352)	FYCO1 (ENSSGRG00000021351)	ENSSGRG00000021344	ENSSGRG00000021343	gpsm2l (ENSSGRG00000021329)	ENSSGRG00000021296	TGM1 (ENSSGRG00000021294)	TGM1 (ENSSGRG00000021286)	elovl4b (ENSSGRG00000021281)	ENSSGRG00000021280	SOGA3 (ENSSGRG00000021279)	rnf146 (ENSSGRG00000021278)	ENSSGRG00000021276	cltrn (ENSSGRG00000021275)
Cyprininae	ANCESTRAL SPECIES	427	ENSGT00940000156230.p.a	ENSGT00940000159686.f	ENSGT00940000158250.d.b.a	ENSGT00940000159117.a	ENSGT01050000244806.b.a.a.b	ENSGT00940000156872.c.a	ENSGT00390000005294.a.c.a	ENSGT00390000016392.j	ENSGT00940000160734.d.b	ENSGT00390000001400.h	ENSGT01010000222287.A.c.b	ENSGT00940000168345.a	ENSGT00390000018003.a.k.b	ENSGT00390000004348.b	ENSGT00950000182985.b.a.k	ENSGT00950000182941.a.a.a.a.b ##22	ENSGT01090000260052.a.b.j.f.a.a
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	42	tnfrsf9a (ENSCARG00000058025)	ENSCARG00000058047	uts2a (ENSCARG00000058102)	kcng1 (ENSCARG00000058128)	src (ENSCARG00000058166)	mical1 (ENSCARG00000058346)	ENSCARG00000058407	camk1gb (ENSCARG00000058426)	g0s2 (ENSCARG00000058676)	otud3 (ENSCARG00000058695)	vwa1 (ENSCARG00000058717)	HTR6 (ENSCARG00000058760)	ENSCARG00000058780	SIKE1 (ENSCARG00000058812)	ppp1r14c (ENSCARG00000058829)	ENSCARG00000058860 ##22	XCR1 (ENSCARG00000058913)	XCR1 (ENSCARG00000058923)	TGM1 (ENSCARG00000058946)	gpsm2l (ENSCARG00000059008)	ENSCARG00000059100	FYCO1 (ENSCARG00000060289)	XCR1 (ENSCARG00000060381)	ENSCARG00000060398	tent5ab (ENSCARG00000060445)	elovl4b (ENSCARG00000060479)	SOGA3 (ENSCARG00000060497)	rnf146 (ENSCARG00000060516)	ENSCARG00000060535	ppp1r14c (ENSCARG00000060562)	SIKE1 (ENSCARG00000060591)
Goldfish	MODERN SPECIES	3197															ENSCARG00000060038 ##22	ENSCARG00000060055 ##22	XCR1 (ENSCARG00000060092)	XCR1 (ENSCARG00000060106)
Cyprininae_a	ANCESTRAL SPECIES	647													ENSGT00390000018003.a.k.b	ENSGT00390000004348.b	ENSGT00950000182985.b.a.k	ENSGT00950000182941.a.a.a.a.b ##22	ENSGT01090000260052.a.b.j.f.a.a	ENSGT01090000260052.a.b.j.e.a.a	ENSGT00940000154044.a.a.q.a.b	ENSGT00940000159858.c
Common carp reference	MODERN SPECIES	11	NFATC2 (ENSCCRG00000029533)	kcng1 (ENSCCRG00000058181)	src (ENSCCRG00000019707)	mical1 (ENSCCRG00000019713)	ENSCCRG00000073601	camk1gb (ENSCCRG00000019719)	g0s2 (ENSCCRG00000019729)	otud3 (ENSCCRG00000078727)	vwa1 (ENSCCRG00000057290)	ENSCCRG00000019740	ENSCCRG00000019743	ENSCCRG00000068070	ENSCCRG00000019752	iyd (ENSCCRG00000019758)	ppp1r14c (ENSCCRG00000071204)	ENSCCRG00000082582 ##22	ENSCCRG00000020444	ENSCCRG00000080507	ENSCCRG00000020464	ENSCCRG00000020506	gpsm2l (ENSCCRG00000022665)	ENSCCRG00000067315	ENSCCRG00000058834	ENSCCRG00000062712	ENSCCRG00000081384	ENSCCRG00000074293	ENSCCRG00000017783	ENSCCRG00000067461	tent5ab (ENSCCRG00000072093)	ENSCCRG00000065482	elovl4b (ENSCCRG00000047177)
Zebrafish	MODERN SPECIES	15	ATP9A (ENSDARG00000115869)	NFATC2 (ENSDARG00000100927)	kcng1 (ENSDARG00000099038)	src (ENSDARG00000008107)	mical1 (ENSDARG00000011809)	camk1gb (ENSDARG00000008788)	g0s2 (ENSDARG00000078859)	otud3 (ENSDARG00000022648)	vwa1 (ENSDARG00000075468)	TMCO4 (ENSDARG00000078924)	HTR6 (ENSDARG00000016095)	micos10 (ENSDARG00000101619)	SIKE1 (ENSDARG00000102199)	iyd (ENSDARG00000076056)	ppp1r14c (ENSDARG00000077341)	ENSDARG00000104435 ##22	XCR1 (ENSDARG00000054847)	FYCO1 (ENSDARG00000104500)	ENSDARG00000095788	gpsm2l (ENSDARG00000102026)	ENSDARG00000101595	ENSDARG00000005913	ENSDARG00000112258	tent5ab (ENSDARG00000054641)	elovl4b (ENSDARG00000027495)	SOGA3 (ENSDARG00000075455)	rnf146 (ENSDARG00000089981)	ENSDARG00000075960	mdp1 (ENSDARG00000088040)	ENSDARG00000067808	ENSDARG00000095001
Euteleosteomorpha	ANCESTRAL SPECIES	634															ENSGT00950000182985.b.a	ENSGT00950000182941.a.a.a.a ##22
Acanthomorphata	ANCESTRAL SPECIES	97																ENSGT00950000182941.a.a.a.a ##22	ENSGT00940000164948	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156248	ENSGT01080000257573	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318	ENSGT00940000159157	ENSGT00560000077266.a
Euacanthomorphacea	ANCESTRAL SPECIES	13	ENSGT00410000025698.a	ENSGT00940000157219.e	ENSGT00520000055570.B.l	ENSGT00940000171406	ENSGT00940000164632.b.b	ENSGT00940000155936.a.b	ENSGT00940000155678	ENSGT00390000012474	ENSGT00940000161165	ENSGT00390000007551	ENSGT00940000157463.b	ENSGT01010000229923	ENSGT00390000001965	ENSGT00390000004348	ENSGT00950000182985.b.a	ENSGT00950000182941.a.a.a.a ##22	ENSGT00940000164948	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156248	ENSGT01080000257573	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318	ENSGT00940000163299.B.b.b.g.a	ENSGT00940000159157
Percomorphaceae	ANCESTRAL SPECIES	14	ENSGT00410000025698.a	ENSGT00940000157219.e	ENSGT00520000055570.B.l	ENSGT00940000171406	ENSGT00940000164632.b.b	ENSGT00940000155936.a.b	ENSGT00940000155678	ENSGT00390000012474	ENSGT00940000161165	ENSGT00390000007551	ENSGT00940000157463.b	ENSGT01010000229923	ENSGT00390000001965	ENSGT00390000004348	ENSGT00950000182985.b.a	ENSGT00950000182941.a.a.a.a ##22	ENSGT00940000164948	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156248	ENSGT01080000257573	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318	ENSGT00940000157260.s	ENSGT00940000166622
Tiger tail seahorse	MODERN SPECIES	465	ENSHCOG00000000229	ENSHCOG00000007192	cpsf3 (ENSHCOG00000007251)	ADAM17 (ENSHCOG00000007264)	taf1b (ENSHCOG00000000234)	klf11a (ENSHCOG00000000673)	RRM2 (ENSHCOG00000000242)	ENSHCOG00000007346	ENSHCOG00000007365	ENSHCOG00000007373	ubr7 (ENSHCOG00000007377)	ASB2 (ENSHCOG00000007421)	sec63 (ENSHCOG00000007466)	iyd (ENSHCOG00000007479)	ppp1r14c (ENSHCOG00000007490)	ENSHCOG00000007512 ##22	armc1l (ENSHCOG00000007533)	mtfr2 (ENSHCOG00000007539)	PDE7B (ENSHCOG00000007553)	myb (ENSHCOG00000007560)	hbs1l (ENSHCOG00000007581)	aldh8a1 (ENSHCOG00000007598)	SGK1 (ENSHCOG00000007633)	CNIH3 (ENSHCOG00000007653)	ENSHCOG00000007667	ptchd4 (ENSHCOG00000007675)	opn5 (ENSHCOG00000007694)	cd2ap (ENSHCOG00000007770)	tnfrsf21 (ENSHCOG00000007783)	ENSHCOG00000007789	disp1 (ENSHCOG00000007804)
Percomorphaceae_B	ANCESTRAL SPECIES	18	ENSGT00410000025698.a	ENSGT00940000157219.e	ENSGT00520000055570.B.l	ENSGT00940000171406	ENSGT00940000164632.b.b	ENSGT00940000155936.a.b	ENSGT00940000155678	ENSGT00390000012474	ENSGT00940000161165	ENSGT00390000007551	ENSGT00940000157463.b	ENSGT01010000229923	ENSGT00390000001965	ENSGT00390000004348	ENSGT00950000182985.b.a	ENSGT00950000182941.a.a.a.a ##22	ENSGT00940000164948	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156248	ENSGT01080000257573	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00970000193390.c.a.a.b	ENSGT01030000234583.a.a.c.b.b	ENSGT00950000182978.A.a.a	ENSGT00390000018318
Percomorphaceae_C	ANCESTRAL SPECIES	19	ENSGT00410000025698.a	ENSGT00940000157219.e	ENSGT00520000055570.B.l	ENSGT00940000171406	ENSGT00530000064185	ENSGT00940000155936.a.b	ENSGT00940000155678	ENSGT00390000012474	ENSGT00940000161165	ENSGT00390000007551	ENSGT00940000157463.b	ENSGT01010000229923	ENSGT00390000001965	ENSGT00390000004348	ENSGT00950000182985.b.a	ENSGT00950000182941.a.a.a.a ##22	ENSGT00940000164948	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00970000193390.c.a.a.b	ENSGT00950000182978.A.a.a	ENSGT00390000018318	ENSGT00940000157260.s	ENSGT00940000166622
Eupercaria	ANCESTRAL SPECIES	16	ENSGT00410000025698.a	ENSGT00940000157219.e	ENSGT00520000055570.B.l	ENSGT00940000171406	ENSGT00530000064185	ENSGT00940000155936.a.b	ENSGT00940000155678	ENSGT00390000012474	ENSGT00940000161165	ENSGT00390000007551	ENSGT00940000157463.b	ENSGT01010000229923	ENSGT00390000001965	ENSGT00390000004348	ENSGT00950000182985.b.a	ENSGT00950000182941.a.a.a.a ##22	ENSGT00940000164948	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00940000163520.A.a.a.a.a.a.a.g.a.b.b	ENSGT00970000193390.c.a.a.b	ENSGT00950000182978.A.a.a	ENSGT00390000018318	ENSGT00940000157260.s
Eupecaria_A	ANCESTRAL SPECIES	16	ENSGT00410000025698.a	ENSGT00940000157219.e	ENSGT00520000055570.B.l	ENSGT00940000171406	ENSGT00530000064185	ENSGT00940000155936.a.b	ENSGT00940000155678	ENSGT00390000012474	ENSGT00940000161165	ENSGT00390000007551	ENSGT00940000157463.b	ENSGT01010000229923	ENSGT00390000001965	ENSGT00390000004348	ENSGT00950000182985.b.a	ENSGT00950000182941.a.a.a.a ##22	ENSGT00940000164948	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00940000163520.A.a.a.a.a.a.a.g.a.b.b	ENSGT00970000193390.c.a.a.b	ENSGT00950000182978.A.a.a	ENSGT00390000018318	ENSGT00940000157260.s
Ballan wrasse	MODERN SPECIES	121						ENSLBEG00000003550	tmem63a (ENSLBEG00000003473)	mrps18a (ENSLBEG00000003391)	rsph9 (ENSLBEG00000003432)	vegfab (ENSLBEG00000003354)	naga (ENSLBEG00000003326)	ENSLBEG00000003295	wdr26b (ENSLBEG00000003265)	fez2b (ENSLBEG00000003220)	ppp1r14c (ENSLBEG00000003174)	ENSLBEG00000003050 ##22	armc1l (ENSLBEG00000002980)	mtfr2 (ENSLBEG00000002959)	PDE7B (ENSLBEG00000002915)	myb (ENSLBEG00000002889)	hbs1l (ENSLBEG00000002784)	aldh8a1 (ENSLBEG00000002728)	SGK1 (ENSLBEG00000002663)	slc2a12 (ENSLBEG00000002615)	tbpl1 (ENSLBEG00000002554)	tcf21 (ENSLBEG00000002535)	eya4 (ENSLBEG00000002488)	rps12 (ENSLBEG00000002426)	ENSLBEG00000002373	ENSLBEG00000002356	sh3bgrl2 (ENSLBEG00000002334)
Eupecaria_B	ANCESTRAL SPECIES	16	ENSGT00410000025698.a	ENSGT00940000157219.e	ENSGT00520000055570.B.l	ENSGT00940000171406	ENSGT00530000064185	ENSGT00940000155936.a.b	ENSGT00940000155678	ENSGT00390000012474	ENSGT00940000161165	ENSGT00390000007551	ENSGT00940000157463.b	ENSGT01010000229923	ENSGT00390000001965	ENSGT00390000004348	ENSGT00950000182985.b.a	ENSGT00950000182941.a.a.a.a ##22	ENSGT00940000164948	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00940000163520.A.a.a.a.a.a.a.g.a.b.b	ENSGT00970000193390.c.a.a.b	ENSGT00950000182978.A.a.a	ENSGT00390000018318	ENSGT00940000157260.s
Perciformes	ANCESTRAL SPECIES	14	ENSGT00410000025698.a	ENSGT00940000157219.e	ENSGT00520000055570.B.l	ENSGT00940000171406	ENSGT00530000064185	ENSGT00940000155936.a.b	ENSGT00940000155678	ENSGT00390000012474	ENSGT00940000161165	ENSGT00390000007551	ENSGT00940000157463.b	ENSGT01010000229923	ENSGT00390000001965	ENSGT00390000004348	ENSGT00950000182985.b.a	ENSGT00950000182941.a.a.a.a ##22	ENSGT00940000164948	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00940000163520.A.a.a.a.a.a.a.g.a.b.b	ENSGT00970000193390.c.a.a.b	ENSGT00950000182978.A.a.a	ENSGT00390000018318	ENSGT00940000157260.s
Cottioidei	ANCESTRAL SPECIES	23	ENSGT00390000017627.a.a.a	ENSGT00940000165654	ENSGT00940000153433.B.a.a	ENSGT00410000025698.a	ENSGT00940000157219.e	ENSGT00520000055570.B.l	ENSGT00940000164632.b.b	ENSGT00940000155678	ENSGT00390000012474	ENSGT00940000161165	ENSGT00390000007551	ENSGT00940000157463.b	ENSGT00390000001965	ENSGT00390000004348	ENSGT00950000182985.b.a	ENSGT00950000182941.a.a.a.a ##22	ENSGT00940000164948	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00970000193390.c.a.a.b	ENSGT00950000182978.A.a.a	ENSGT00390000018318	ENSGT00940000157260.s	ENSGT00940000172013
Lumpfish	MODERN SPECIES	16	wdr26b (ENSCLMG00005012234)	fez2b (ENSCLMG00005012791)	esrrgb (ENSCLMG00005012792)	si:ch73-21k16.4 (ENSCLMG00005012793)	LPIN1 (ENSCLMG00005012806)	ENSCLMG00005012886	ENSCLMG00005012890	DDX1 (ENSCLMG00005012911)	nbas (ENSCLMG00005013273)	lratd1 (ENSCLMG00005015535)	MTLN (ENSCLMG00005015536)	ENSCLMG00005015537	sec63 (ENSCLMG00005015538)	iyd (ENSCLMG00005015549)	ppp1r14c (ENSCLMG00005015550)	ENSCLMG00005015551 ##22	armc1l (ENSCLMG00005015552)	mtfr2 (ENSCLMG00005015553)	PDE7B (ENSCLMG00005015554)	myb (ENSCLMG00005015556)	hbs1l (ENSCLMG00005015562)	aldh8a1 (ENSCLMG00005017206)	SGK1 (ENSCLMG00005017211)	slc2a12 (ENSCLMG00005017218)	tbpl1 (ENSCLMG00005017222)	tcf21 (ENSCLMG00005017223)	ENSCLMG00005017224	ENSCLMG00005017225	eya4 (ENSCLMG00005017245)	rps12 (ENSCLMG00005017809)	ENSCLMG00005017811
Stickleback	MODERN SPECIES	18	NHSL1 (ENSGACG00000011355)	acbd3 (ENSGACG00000011352)	mixl1 (ENSGACG00000011351)	lin9 (ENSGACG00000011327)	ENSGACG00000011324	parp1 (ENSGACG00000011280)	itsn2a (ENSGACG00000011256)	DDX1 (ENSGACG00000011162)	nbas (ENSGACG00000011136)	lratd1 (ENSGACG00000011134)	MTLN (ENSGACG00000011129)	ENSGACG00000011123	sec63 (ENSGACG00000011115)	iyd (ENSGACG00000011113)	ppp1r14c (ENSGACG00000011108)	ENSGACG00000011098 ##22	armc1l (ENSGACG00000011079)	mtfr2 (ENSGACG00000011073)	PDE7B (ENSGACG00000011060)	myb (ENSGACG00000011054)	hbs1l (ENSGACG00000011035)	aldh8a1 (ENSGACG00000011008)	SGK1 (ENSGACG00000010973)	slc2a12 (ENSGACG00000010968)	tbpl1 (ENSGACG00000010959)	tcf21 (ENSGACG00000010957)	ENSGACG00000010950	eya4 (ENSGACG00000010932)	rps12 (ENSGACG00000010916)	ENSGACG00000010912	ENSGACG00000010905
Perciformes_a	ANCESTRAL SPECIES	15	ENSGT00410000025698.a	ENSGT00940000157219.e	ENSGT00520000055570.B.l	ENSGT00940000171406	ENSGT00530000064185	ENSGT00940000155936.a.b	ENSGT00940000155678	ENSGT00390000012474	ENSGT00940000161165	ENSGT00390000007551	ENSGT00940000157463.b	ENSGT01010000229923	ENSGT00390000001965	ENSGT00390000004348	ENSGT00950000182985.b.a	ENSGT00950000182941.a.a.a.a ##22	ENSGT00940000164948	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00940000163520.A.a.a.a.a.a.a.g.a.b.b	ENSGT00970000193390.c.a.a.b	ENSGT00950000182978.A.a.a	ENSGT00390000018318	ENSGT00940000157260.s
Channel bull blenny	MODERN SPECIES	16	esrrgb (ENSCGOG00000012028)	LPIN1 (ENSCGOG00000011860)	ENSCGOG00000011844	ENSCGOG00000011842	ENSCGOG00000011840	itsn2a (ENSCGOG00000024079)	DDX1 (ENSCGOG00000023730)	nbas (ENSCGOG00000023345)	lratd1 (ENSCGOG00000023270)	MTLN (ENSCGOG00000023269)	ENSCGOG00000023268	ENSCGOG00000023267	sec63 (ENSCGOG00000022998)	iyd (ENSCGOG00000022979)	ppp1r14c (ENSCGOG00000022978)	ENSCGOG00000022974 ##22	armc1l (ENSCGOG00000022969)	mtfr2 (ENSCGOG00000022968)	PDE7B (ENSCGOG00000022964)	myb (ENSCGOG00000022951)	hbs1l (ENSCGOG00000022448)	aldh8a1 (ENSCGOG00000022428)	SGK1 (ENSCGOG00000022132)	slc2a12 (ENSCGOG00000022108)	tbpl1 (ENSCGOG00000022106)	tcf21 (ENSCGOG00000022105)	ENSCGOG00000022104	ENSCGOG00000022103	eya4 (ENSCGOG00000021345)	rps12 (ENSCGOG00000021292)	ENSCGOG00000021288
Eupecaria_C	ANCESTRAL SPECIES	16	ENSGT00390000017627.a.a.a	ENSGT00940000153433.B.a.a	ENSGT00410000025698.a	ENSGT00940000157219.e	ENSGT00520000055570.B.l	ENSGT00530000064185	ENSGT00940000155936.a.b	ENSGT00940000155678	ENSGT00390000012474	ENSGT00940000161165	ENSGT00390000007551	ENSGT00940000157463.b	ENSGT00390000001965	ENSGT00390000004348	ENSGT00950000182985.b.a	ENSGT00950000182941.a.a.a.a ##22	ENSGT00940000164948	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00940000163520.A.a.a.a.a.a.a.g.a.b.b	ENSGT00970000193390.c.a.a.b	ENSGT00950000182978.A.a.a	ENSGT00390000018318	ENSGT00940000157260.s
Gilthead seabream	MODERN SPECIES	14	esrrgb (ENSSAUG00010017397)	si:ch73-21k16.4 (ENSSAUG00010017396)	LPIN1 (ENSSAUG00010017247)	ENSSAUG00010017227	ENSSAUG00010017319	itsn2a (ENSSAUG00010016348)	ENSSAUG00010016329	DDX1 (ENSSAUG00010015435)	nbas (ENSSAUG00010015217)	lratd1 (ENSSAUG00010015197)	MTLN (ENSSAUG00010015196)	ENSSAUG00010015194	sec63 (ENSSAUG00010015190)	ppp1r14c (ENSSAUG00010015181)	iyd (ENSSAUG00010015176)	ENSSAUG00010015171 ##22	armc1l (ENSSAUG00010015165)	mtfr2 (ENSSAUG00010015159)	PDE7B (ENSSAUG00010015069)	myb (ENSSAUG00010015047)	hbs1l (ENSSAUG00010014998)	aldh8a1 (ENSSAUG00010014983)	SGK1 (ENSSAUG00010014872)	slc2a12 (ENSSAUG00010014862)	tbpl1 (ENSSAUG00010014854)	tcf21 (ENSSAUG00010014853)	ENSSAUG00010014852	ENSSAUG00010014850	ENSSAUG00010014849	ENSSAUG00010014847	ENSSAUG00010014846
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	11	ENSGT00390000017627.a.a.a	ENSGT00940000153433.B.a.a	ENSGT00410000025698.a	ENSGT00940000157219.e	ENSGT00520000055570.B.l	ENSGT00530000064185	ENSGT00940000155936.a.b	ENSGT00940000155678	ENSGT00390000012474	ENSGT00940000161165	ENSGT00390000007551	ENSGT00940000157463.b	ENSGT00390000001965	ENSGT00390000004348	ENSGT00950000182985.b.a	ENSGT00950000182941.a.a.a.a ##22	ENSGT00940000164948	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00940000163520.A.a.a.a.a.a.a.g.a.b.b	ENSGT00970000193390.c.a.a.b	ENSGT00950000182978.A.a.a	ENSGT00390000018318	ENSGT00940000157260.s
European seabass	MODERN SPECIES	7	ENSDLAG00005009251	ENSDLAG00005009290	wdr26b (ENSDLAG00005009919)	fez2b (ENSDLAG00005010147)	esrrgb (ENSDLAG00005010210)	si:ch73-21k16.4 (ENSDLAG00005028457)	ENSDLAG00005010265	ENSDLAG00005011948	ENSDLAG00005012045	DDX1 (ENSDLAG00005012448)	nbas (ENSDLAG00005012745)	lratd1 (ENSDLAG00005015279)	sec63 (ENSDLAG00005004405)	ENSDLAG00005029471	ENSDLAG00005005523	ENSDLAG00005005535 ##22	armc1l (ENSDLAG00005006116)	mtfr2 (ENSDLAG00005006124)	ENSDLAG00005006199	myb (ENSDLAG00005006922)	hbs1l (ENSDLAG00005005564)	aldh8a1 (ENSDLAG00005006999)	SGK1 (ENSDLAG00005034441)	slc2a12 (ENSDLAG00005007206)	tbpl1 (ENSDLAG00005007221)	tcf21 (ENSDLAG00005028532)	ENSDLAG00005032233	ENSDLAG00005007238	ENSDLAG00005031041	eya4 (ENSDLAG00005007286)	rps12 (ENSDLAG00005007952)
Large yellow croaker	MODERN SPECIES	482	fez2b (ENSLCRG00005011964)	esrrgb (ENSLCRG00005011854)	si:ch73-21k16.4 (ENSLCRG00005011851)	LPIN1 (ENSLCRG00005011431)	GNPAT (ENSLCRG00005010581)	ENSLCRG00005010322	itsn2a (ENSLCRG00005006996)	DDX1 (ENSLCRG00005005311)	nbas (ENSLCRG00005004449)	lratd1 (ENSLCRG00005003904)	MTLN (ENSLCRG00005003899)	ENSLCRG00005003897	sec63 (ENSLCRG00005003849)	iyd (ENSLCRG00005003806)	ppp1r14c (ENSLCRG00005003793)	ENSLCRG00005003741 ##22	armc1l (ENSLCRG00005003715)	PDE7B (ENSLCRG00005003670)	myb (ENSLCRG00005003593)	hbs1l (ENSLCRG00005003386)	aldh8a1 (ENSLCRG00005003117)	SGK1 (ENSLCRG00005003012)	slc2a12 (ENSLCRG00005002864)	tbpl1 (ENSLCRG00005002836)	tcf21 (ENSLCRG00005002802)	cbln17 (ENSLCRG00005002791)	ENSLCRG00005002760	eya4 (ENSLCRG00005002221)	rps12 (ENSLCRG00005001978)	ENSLCRG00005001858	ENSLCRG00005001472
Tetraodontidae	ANCESTRAL SPECIES	15	ENSGT00940000156549.a.b	ENSGT00390000017627.a.a.a	ENSGT00940000153433.B.a.a	ENSGT00410000025698.a	ENSGT00940000157219.e	ENSGT00520000055570.B.l	ENSGT00940000155936.a.b	ENSGT00940000155678	ENSGT00390000012474	ENSGT00940000161165	ENSGT00390000007551	ENSGT00940000157463.b	ENSGT00390000001965	ENSGT00390000004348	ENSGT00950000182985.b.a	ENSGT00950000182941.a.a.a.a ##22	ENSGT00940000164948	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712.l	ENSGT00940000155712.k	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318	ENSGT00940000157260.s	ENSGT00940000166622
Fugu	MODERN SPECIES	7	vegfa (ENSTRUG00000031283)	naga (ENSTRUG00000015290)	ENSTRUG00000015342	fez2b (ENSTRUG00000015432)	esrrgb (ENSTRUG00000015470)	si:ch73-21k16.4 (ENSTRUG00000015569)	LPIN1 (ENSTRUG00000015609)	GNPAT (ENSTRUG00000015672)	DDX1 (ENSTRUG00000015765)	nbas (ENSTRUG00000015826)	lratd1 (ENSTRUG00000015913)	MTLN (ENSTRUG00000020809)	ENSTRUG00000026635	iyd (ENSTRUG00000015968)	ppp1r14c (ENSTRUG00000020841)	ENSTRUG00000015983 ##22	armc1l (ENSTRUG00000016025)	mtfr2 (ENSTRUG00000030934)	tbpl1 (ENSTRUG00000016041)	PDE7B (ENSTRUG00000016053)	myb (ENSTRUG00000016069)	hbs1l (ENSTRUG00000016128)	aldh8a1 (ENSTRUG00000016173)	SGK1 (ENSTRUG00000002784)	slc2a12 (ENSTRUG00000003357)	tbpl1 (ENSTRUG00000003677)	tcf21 (ENSTRUG00000003919)	eya4 (ENSTRUG00000003990)	rps12 (ENSTRUG00000004877)	ENSTRUG00000019648	ENSTRUG00000005039
Tetraodon	MODERN SPECIES	5	mrps18a (ENSTNIG00000016302)	ENSTNIG00000016303	si:ch73-21k16.4 (ENSTNIG00000016304)	LPIN1 (ENSTNIG00000016305)	GNPAT (ENSTNIG00000016306)	ENSTNIG00000000786	ENSTNIG00000016307	itsn2a (ENSTNIG00000016308)	DDX1 (ENSTNIG00000016309)	nbas (ENSTNIG00000016310)	lratd1 (ENSTNIG00000001205)	ENSTNIG00000016311	sec63 (ENSTNIG00000016312)	iyd (ENSTNIG00000016313)	ppp1r14c (ENSTNIG00000016314)	ENSTNIG00000016315 ##22	armc1l (ENSTNIG00000016316)	mtfr2 (ENSTNIG00000016317)	PDE7B (ENSTNIG00000016318)	myb (ENSTNIG00000016319)	hbs1l (ENSTNIG00000016320)	aldh8a1 (ENSTNIG00000016321)	SGK1 (ENSTNIG00000016322)	slc2a12 (ENSTNIG00000016323)	tbpl1 (ENSTNIG00000016324)	tbpl1 (ENSTNIG00000016325)	tcf21 (ENSTNIG00000016326)	eya4 (ENSTNIG00000016327)	rps12 (ENSTNIG00000016328)	ENSTNIG00000016329	ENSTNIG00000016330
Percomorphaceae_D	ANCESTRAL SPECIES	18	ENSGT00940000153433.B.a.a	ENSGT00410000025698.a	ENSGT00940000157219.e	ENSGT00520000055570.B.l	ENSGT00940000171406	ENSGT00940000155936.a.b	ENSGT00940000155678	ENSGT00390000012474	ENSGT00940000161165	ENSGT00390000007551	ENSGT00940000157463.b	ENSGT01010000229923	ENSGT00390000001965	ENSGT00390000004348	ENSGT00950000182985.b.a	ENSGT00950000182941.a.a.a.a ##22	ENSGT00940000164948	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00970000193390.c.a.a.b	ENSGT00950000182978.A.a.a	ENSGT00390000018318	ENSGT00940000157260.s	ENSGT00940000166622
Anabantaria	ANCESTRAL SPECIES	20	ENSGT00940000153433.B.a.a	ENSGT00410000025698.a	ENSGT00940000157219.e	ENSGT00520000055570.B.l	ENSGT00940000171406	ENSGT00940000155936.a.b	ENSGT00940000155678	ENSGT00390000012474	ENSGT00940000161165	ENSGT00390000007551	ENSGT00940000157463.b	ENSGT01010000229923	ENSGT00390000001965	ENSGT00390000004348	ENSGT00950000182985.b.a	ENSGT00950000182941.a.a.a.a ##22	ENSGT00940000164948	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00970000193390.c.a.a.b	ENSGT00950000182978.A.a.a	ENSGT00390000018318	ENSGT00940000157260.s	ENSGT00940000166622
Zig-zag eel	MODERN SPECIES	16	fez2b (ENSMAMG00000015639)	esrrgb (ENSMAMG00000015664)	si:ch73-21k16.4 (ENSMAMG00000015684)	ENSMAMG00000015703	ENSMAMG00000015792	ENSMAMG00000015804	ENSMAMG00000015813	DDX1 (ENSMAMG00000015916)	nbas (ENSMAMG00000016025)	lratd1 (ENSMAMG00000016158)	ENSMAMG00000016173	ENSMAMG00000016178	sec63 (ENSMAMG00000016196)	ENSMAMG00000016255	ENSMAMG00000016278	ENSMAMG00000016292 ##22	armc1l (ENSMAMG00000016330)	mtfr2 (ENSMAMG00000016358)	ENSMAMG00000016372	myb (ENSMAMG00000016430)	hbs1l (ENSMAMG00000016498)	aldh8a1 (ENSMAMG00000016570)	SGK1 (ENSMAMG00000016591)	ENSMAMG00000016608	slc2a12 (ENSMAMG00000016616)	tbpl1 (ENSMAMG00000016622)	tcf21 (ENSMAMG00000025174)	ENSMAMG00000016648	eya4 (ENSMAMG00000016684)	rps12 (ENSMAMG00000016776)	ENSMAMG00000016801
Anabantoidei	ANCESTRAL SPECIES	15	ENSGT00940000153433.B.a.a	ENSGT00410000025698.a	ENSGT00940000157219.e	ENSGT00520000055570.B.l	ENSGT00940000171406	ENSGT00940000155936.a.b	ENSGT00940000155678	ENSGT00390000012474	ENSGT00940000161165	ENSGT00390000007551	ENSGT00940000157463.b	ENSGT01010000229923	ENSGT00390000001965	ENSGT00390000004348	ENSGT00950000182985.b.a	ENSGT00950000182941.a.a.a.a ##22	ENSGT00940000164948	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00970000193390.c.a.a.b	ENSGT00950000182978.A.a.a	ENSGT00390000018318	ENSGT00940000157260.s	ENSGT00940000166622
Climbing perch	MODERN SPECIES	15	fez2b (ENSATEG00000003610)	esrrgb (ENSATEG00000003662)	si:ch73-21k16.4 (ENSATEG00000003701)	ENSATEG00000003757	ENSATEG00000028510	ENSATEG00000029757	DDX1 (ENSATEG00000003965)	nbas (ENSATEG00000004094)	lratd1 (ENSATEG00000004217)	ENSATEG00000004228	ENSATEG00000028701	ENSATEG00000029724	sec63 (ENSATEG00000004251)	ENSATEG00000004277	ENSATEG00000026982	ENSATEG00000004334 ##22	armc1l (ENSATEG00000004348)	mtfr2 (ENSATEG00000004387)	ENSATEG00000004395	myb (ENSATEG00000004447)	hbs1l (ENSATEG00000004459)	aldh8a1 (ENSATEG00000004552)	SGK1 (ENSATEG00000004646)	slc2a12 (ENSATEG00000004712)	tbpl1 (ENSATEG00000004722)	tcf21 (ENSATEG00000004746)	ENSATEG00000004751	eya4 (ENSATEG00000004763)	rps12 (ENSATEG00000004850)	ENSATEG00000026850	ENSATEG00000004901
Siamese fighting fish	MODERN SPECIES	13	ENSBSLG00000025027	rps12 (ENSBSLG00000025024)	eya4 (ENSBSLG00000024236)	tcf21 (ENSBSLG00000024175)	tbpl1 (ENSBSLG00000024172)	slc2a12 (ENSBSLG00000024164)	DDX1 (ENSBSLG00000024072)	nbas (ENSBSLG00000023241)	lratd1 (ENSBSLG00000023173)	MTLN (ENSBSLG00000023168)	ENSBSLG00000023162	ENSBSLG00000023158	sec63 (ENSBSLG00000023059)	iyd (ENSBSLG00000022978)	ppp1r14c (ENSBSLG00000022965)	ENSBSLG00000022954 ##22	armc1l (ENSBSLG00000022951)	mtfr2 (ENSBSLG00000022941)	PDE7B (ENSBSLG00000022578)	myb (ENSBSLG00000022543)	hbs1l (ENSBSLG00000022394)	aldh8a1 (ENSBSLG00000022325)	SGK1 (ENSBSLG00000021304)	itsn2a (ENSBSLG00000018378)	ENSBSLG00000018217	ENSBSLG00000018176	LPIN1 (ENSBSLG00000017617)	si:ch73-21k16.4 (ENSBSLG00000017582)	esrrgb (ENSBSLG00000017554)	fez2b (ENSBSLG00000017367)	wdr26b (ENSBSLG00000016770)
Carangaria	ANCESTRAL SPECIES	18	ENSGT00940000165654	ENSGT00940000153433.B.a.a	ENSGT00410000025698.a	ENSGT00940000157219.e	ENSGT00520000055570.B.l	ENSGT00940000171406	ENSGT00940000155936.a.b	ENSGT00940000155678	ENSGT00390000012474	ENSGT00940000161165	ENSGT00390000007551	ENSGT00940000157463.b	ENSGT00390000001965	ENSGT00390000004348	ENSGT00950000182985.b.a	ENSGT00950000182941.a.a.a.a ##22	ENSGT00940000164948	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00940000163520.A.a.a.a.a.a.a.g.a.b.b	ENSGT00970000193390.c.a.a.b	ENSGT00950000182978.A.a.a	ENSGT00390000018318	ENSGT00940000157260.s
Carangaria_A	ANCESTRAL SPECIES	13	ENSGT00940000165654	ENSGT00940000153433.B.a.a	ENSGT00410000025698.a	ENSGT00940000157219.e	ENSGT00520000055570.B.l	ENSGT00940000171406	ENSGT00940000155936.a.b	ENSGT00940000155678	ENSGT00390000012474	ENSGT00940000161165	ENSGT00390000007551	ENSGT00940000157463.b	ENSGT00390000001965	ENSGT00390000004348	ENSGT00950000182985.b.a	ENSGT00950000182941.a.a.a.a ##22	ENSGT00940000164948	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00940000163520.A.a.a.a.a.a.a.g.a.b.b	ENSGT00950000182978.A.a.a	ENSGT00390000018318.d	ENSGT00940000157260.s	ENSGT00940000166622
Seriola	ANCESTRAL SPECIES	4	ENSGT00940000153433.B.a.a	ENSGT00410000025698.a	ENSGT00940000157219.e	ENSGT00520000055570.B.l	ENSGT00940000171406	ENSGT00530000064185	ENSGT00940000155936.a.b	ENSGT00940000155678	ENSGT00390000012474	ENSGT00940000161165	ENSGT00390000007551	ENSGT00940000157463.b	ENSGT00390000001965	ENSGT00390000004348	ENSGT00950000182985.b.a	ENSGT00950000182941.a.a.a.a ##22	ENSGT00940000164948	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00940000163520.A.a.a.a.a.a.a.g.a.b.b	ENSGT00950000182978.A.a.a	ENSGT00390000018318.d	ENSGT00940000157260.s	ENSGT00940000166622
Greater amberjack	MODERN SPECIES	10	ENSSDUG00000011977	esrrgb (ENSSDUG00000011987)	si:ch73-21k16.4 (ENSSDUG00000011998)	LPIN1 (ENSSDUG00000012032)	ENSSDUG00000012152	ENSSDUG00000012233	itsn2a (ENSSDUG00000012253)	DDX1 (ENSSDUG00000012334)	nbas (ENSSDUG00000012449)	lratd1 (ENSSDUG00000012611)	MTLN (ENSSDUG00000012621)	ENSSDUG00000012637	sec63 (ENSSDUG00000012649)	iyd (ENSSDUG00000012760)	ppp1r14c (ENSSDUG00000012796)	ENSSDUG00000012807 ##22	armc1l (ENSSDUG00000012847)	mtfr2 (ENSSDUG00000012877)	PDE7B (ENSSDUG00000012904)	myb (ENSSDUG00000012945)	hbs1l (ENSSDUG00000012974)	aldh8a1 (ENSSDUG00000013030)	SGK1 (ENSSDUG00000013062)	slc2a12 (ENSSDUG00000013138)	tbpl1 (ENSSDUG00000013171)	tcf21 (ENSSDUG00000013207)	ENSSDUG00000013218	eya4 (ENSSDUG00000013224)	rps12 (ENSSDUG00000013264)	ENSSDUG00000013332	ENSSDUG00000013348
Yellowtail amberjack	MODERN SPECIES	2386										lratd1 (ENSSLDG00000005392)	MTLN (ENSSLDG00000005385)	ENSSLDG00000005372	sec63 (ENSSLDG00000005351)	iyd (ENSSLDG00000005322)	ppp1r14c (ENSSLDG00000005286)	ENSSLDG00000005255 ##22	armc1l (ENSSLDG00000005211)	mtfr2 (ENSSLDG00000005175)	PDE7B (ENSSLDG00000005080)	myb (ENSSLDG00000005041)	hbs1l (ENSSLDG00000004960)	aldh8a1 (ENSSLDG00000004918)	SGK1 (ENSSLDG00000004835)
Barramundi perch	MODERN SPECIES	116	esrrgb (ENSLCAG00010017917)	si:ch73-21k16.4 (ENSLCAG00010017915)	LPIN1 (ENSLCAG00010017908)	ENSLCAG00010017897	ENSLCAG00010017891	itsn2a (ENSLCAG00010017671)	DDX1 (ENSLCAG00010017623)	nbas (ENSLCAG00010016931)	ENSLCAG00010016759	lratd1 (ENSLCAG00010016757)	MTLN (ENSLCAG00010016756)	ENSLCAG00010016751	sec63 (ENSLCAG00010016738)	iyd (ENSLCAG00010016728)	ppp1r14c (ENSLCAG00010016726)	ENSLCAG00010016696 ##22	armc1l (ENSLCAG00010016684)	mtfr2 (ENSLCAG00010016681)	PDE7B (ENSLCAG00010016663)	myb (ENSLCAG00010016643)	hbs1l (ENSLCAG00010016550)	aldh8a1 (ENSLCAG00010016511)	SGK1 (ENSLCAG00010016501)	slc2a12 (ENSLCAG00010016495)	tbpl1 (ENSLCAG00010016492)	tcf21 (ENSLCAG00010016485)	ENSLCAG00010016477
Pleuronectoidei	ANCESTRAL SPECIES	11	ENSGT00940000153634.b.b	ENSGT00390000017627.a.a.a	ENSGT00940000153433.B.a.a	ENSGT00410000025698.a	ENSGT00940000157219.e	ENSGT00520000055570.B.l	ENSGT00940000155936.a.b	ENSGT00940000155678	ENSGT00390000012474	ENSGT00940000161165	ENSGT00390000007551	ENSGT00940000157463.b	ENSGT00390000001965	ENSGT00390000004348	ENSGT00950000182985.b.a	ENSGT00950000182941.a.a.a.a ##22	ENSGT00940000164948	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00970000193390.c.a.a.b	ENSGT00950000182978.A.a.a	ENSGT00390000018318	ENSGT00940000171557	ENSGT00940000166622
Tongue sole	MODERN SPECIES	17	tbx18 (ENSCSEG00000002523)	ENSCSEG00000002529	esrrgb (ENSCSEG00000002536)	si:ch73-21k16.4 (ENSCSEG00000002545)	LPIN1 (ENSCSEG00000002548)	ENSCSEG00000002557	itsn2a (ENSCSEG00000002594)	DDX1 (ENSCSEG00000002630)	nbas (ENSCSEG00000002658)	ENSCSEG00000002682	lratd1 (ENSCSEG00000002687)	MTLN (ENSCSEG00000002691)	sec63 (ENSCSEG00000002702)	iyd (ENSCSEG00000002719)	ppp1r14c (ENSCSEG00000002723)	ENSCSEG00000002738 ##22	armc1l (ENSCSEG00000002744)	mtfr2 (ENSCSEG00000002748)	PDE7B (ENSCSEG00000002754)	myb (ENSCSEG00000002762)	hbs1l (ENSCSEG00000002794)	aldh8a1 (ENSCSEG00000002843)	EPM2A (ENSCSEG00000002851)	ENSCSEG00000002854	fbxo30b (ENSCSEG00000002881)	GRM1 (ENSCSEG00000002884)	rab32a (ENSCSEG00000002895)	ENSCSEG00000002897	stxbp5a (ENSCSEG00000002905)	SAMD5 (ENSCSEG00000002921)	sash1a (ENSCSEG00000002925)
Turbot	MODERN SPECIES	12	wdr26b (ENSSMAG00000009471)	fez2b (ENSSMAG00000009510)	esrrgb (ENSSMAG00000009541)	si:ch73-21k16.4 (ENSSMAG00000009585)	ENSSMAG00000009604	ENSSMAG00000009893	ENSSMAG00000009911	DDX1 (ENSSMAG00000010094)	nbas (ENSSMAG00000010197)	lratd1 (ENSSMAG00000010341)	ENSSMAG00000010354	ENSSMAG00000010361	sec63 (ENSSMAG00000010393)	ENSSMAG00000010471	ENSSMAG00000037515	ENSSMAG00000010495 ##22	armc1l (ENSSMAG00000010515)	mtfr2 (ENSSMAG00000010526)	ENSSMAG00000010546	myb (ENSSMAG00000010585)	hbs1l (ENSSMAG00000010621)	aldh8a1 (ENSSMAG00000010687)	SGK1 (ENSSMAG00000010714)	slc2a12 (ENSSMAG00000010765)	tbpl1 (ENSSMAG00000010781)	tcf21 (ENSSMAG00000036326)	ENSSMAG00000025921	ENSSMAG00000010818	eya4 (ENSSMAG00000010837)	rps12 (ENSSMAG00000011021)	ENSSMAG00000011069
Ovalentaria	ANCESTRAL SPECIES	19	ENSGT00940000153433.B.a.a	ENSGT00410000025698.a	ENSGT00940000157219.e	ENSGT00520000055570.B.l	ENSGT00940000171406	ENSGT00940000164632.b.b	ENSGT00940000155936.a.b	ENSGT00940000155678	ENSGT00390000012474	ENSGT00940000161165	ENSGT00390000007551	ENSGT00940000157463.b	ENSGT00390000001965	ENSGT00390000004348	ENSGT00950000182985.b.a	ENSGT00950000182941.a.a.a.a ##22	ENSGT00940000164948	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156248	ENSGT01080000257573	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT01030000234583.a.a.c.b.b	ENSGT00950000182978.A.a.a	ENSGT00390000018318	ENSGT00940000157260.s
Atherinomorphae	ANCESTRAL SPECIES	18	ENSGT00940000165654	ENSGT00940000153433.B.a.a	ENSGT00410000025698.a	ENSGT00940000157219.e	ENSGT00520000055570.B.l	ENSGT00940000164632.b.b	ENSGT00940000155936.a.b	ENSGT00940000155678	ENSGT00390000012474	ENSGT00940000161165	ENSGT00390000007551	ENSGT00940000157463.b	ENSGT00390000001965	ENSGT00390000004348	ENSGT00950000182985.b.a	ENSGT00950000182941.a.a.a.a ##22	ENSGT00940000164948	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT01030000234583.a.a.c.b.b	ENSGT00950000182978.A.a.a	ENSGT00390000018318	ENSGT00940000157260.s	ENSGT00940000166622
Cyprinodontiformes	ANCESTRAL SPECIES	14	ENSGT00940000165654	ENSGT00940000153433.B.a.a	ENSGT00410000025698.a	ENSGT00940000157219.e	ENSGT00520000055570.B.l	ENSGT00940000164632.b.b	ENSGT00940000155936.a.b	ENSGT00940000155678	ENSGT00390000012474	ENSGT00940000161165	ENSGT00390000007551	ENSGT00940000157463.b	ENSGT00390000001965	ENSGT00390000004348	ENSGT00950000182985.b.a	ENSGT00950000182941.a.a.a.a ##22	ENSGT00940000164948	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT01030000234583.a.a.c.b.b	ENSGT00950000182978.A.a.a	ENSGT00390000018318	ENSGT00940000157260.s	ENSGT00940000166622
Aplocheiloidei	ANCESTRAL SPECIES	36									ENSGT00940000155678	ENSGT00390000012474	ENSGT00940000161165	ENSGT00940000157463.b	ENSGT00390000001965	ENSGT00390000004348	ENSGT00950000182985.b.a	ENSGT00950000182941.a.a.a.a ##22	ENSGT00940000164948	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT01030000234583.a.a.c.b.b	ENSGT00950000182978.A.a.a	ENSGT00390000018318	ENSGT00940000157260.s	ENSGT00940000166622
Mangrove rivulus	MODERN SPECIES	100					ENSKMAG00000011181	ENSKMAG00000011211	ENSKMAG00000011258	ENSKMAG00000011272	ENSKMAG00000011304	DDX1 (ENSKMAG00000011340)	nbas (ENSKMAG00000011503)	lratd1 (ENSKMAG00000011712)	ENSKMAG00000011762	sec63 (ENSKMAG00000011802)	iyd (ENSKMAG00000011854)	ENSKMAG00000011889 ##22	ENSKMAG00000011952	armc1l (ENSKMAG00000011971)	mtfr2 (ENSKMAG00000011992)	PDE7B (ENSKMAG00000012024)	myb (ENSKMAG00000012067)	hbs1l (ENSKMAG00000012130)	aldh8a1 (ENSKMAG00000012208)	SGK1 (ENSKMAG00000012232)	slc2a12 (ENSKMAG00000012264)	tbpl1 (ENSKMAG00000012278)	tcf21 (ENSKMAG00000012308)	ENSKMAG00000012321	eya4 (ENSKMAG00000012378)	rps12 (ENSKMAG00000012558)	ENSKMAG00000012689
Turquoise killifish	MODERN SPECIES	969																ENSNFUG00015012883 ##22	armc1l (ENSNFUG00015012903)	mtfr2 (ENSNFUG00015012911)
Cyprinodontoidei	ANCESTRAL SPECIES	12	ENSGT00940000165654	ENSGT00940000153433.B.a.a	ENSGT00410000025698.a	ENSGT00940000157219.e	ENSGT00520000055570.B.l	ENSGT00940000164632.b.b	ENSGT00940000155936.a.b	ENSGT00940000155678	ENSGT00390000012474	ENSGT00940000161165	ENSGT00390000007551	ENSGT00940000157463.b	ENSGT00390000001965	ENSGT00390000004348	ENSGT00950000182985.b.a	ENSGT00950000182941.a.a.a.a ##22	ENSGT00940000164948	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT01030000234583.a.a.c.b.b	ENSGT00950000182978.A.a.a	ENSGT00390000018318	ENSGT00940000157260.s	ENSGT00940000166622
Poeciliinae	ANCESTRAL SPECIES	15	ENSGT00940000165654	ENSGT00940000153433.B.a.a	ENSGT00410000025698.a	ENSGT00940000157219.e	ENSGT00520000055570.B.l	ENSGT00940000164632.b.b	ENSGT00940000155936.a.b	ENSGT00940000155678	ENSGT00390000012474	ENSGT00940000161165	ENSGT00390000007551	ENSGT00940000157463.b	ENSGT00390000001965	ENSGT00390000004348	ENSGT00950000182985.b.a	ENSGT00950000182941.a.a.a.a ##22	ENSGT00940000164948	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT01030000234583.a.a.c.b.b	ENSGT00950000182978.A.a.a	ENSGT00390000018318	ENSGT00940000157260.s	ENSGT00940000166622
Poecilia	ANCESTRAL SPECIES	9	ENSGT00940000165654	ENSGT00940000153433.B.a.a	ENSGT00410000025698.a	ENSGT00940000157219.e	ENSGT00520000055570.B.l	ENSGT00940000164632.b.b	ENSGT00940000155936.a.b	ENSGT00940000155678	ENSGT00390000012474	ENSGT00940000161165	ENSGT00390000007551	ENSGT00940000157463.b	ENSGT00390000001965	ENSGT00390000004348	ENSGT00950000182985.b.a	ENSGT00950000182941.a.a.a.a ##22	ENSGT00940000164948	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00970000193390.c.a.a.b	ENSGT00950000182978.A.a.a	ENSGT00390000018318	ENSGT00940000157260.s	ENSGT00940000166622
NAME_6	ANCESTRAL SPECIES	2	ENSGT00940000165654	ENSGT00940000153433.B.a.a	ENSGT00410000025698.a	ENSGT00940000157219.e	ENSGT00520000055570.B.l	ENSGT00940000164632.b.b	ENSGT00940000155936.a.b	ENSGT00940000155678	ENSGT00390000012474.o	ENSGT00940000161165	ENSGT00390000007551	ENSGT00940000157463.b	ENSGT00390000001965	ENSGT00390000004348	ENSGT00950000182985.b.a	ENSGT00950000182941.a.a.a.a ##22	ENSGT00940000164948	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT01030000234583.a.a.c.b.b	ENSGT00950000182978.A.a.a	ENSGT00390000018318	ENSGT00940000157260.s	ENSGT00940000166622
Amazon molly	MODERN SPECIES	304								DDX1 (ENSPFOG00000011921)	nbas (ENSPFOG00000011910)	lratd1 (ENSPFOG00000020510)	MTLN (ENSPFOG00000020509)	ENSPFOG00000011889	sec63 (ENSPFOG00000011751)	iyd (ENSPFOG00000011699)	ppp1r14c (ENSPFOG00000011693)	ENSPFOG00000011543 ##22	armc1l (ENSPFOG00000011505)	mtfr2 (ENSPFOG00000011457)	PDE7B (ENSPFOG00000011329)	myb (ENSPFOG00000011241)	hbs1l (ENSPFOG00000021764)	aldh8a1 (ENSPFOG00000011010)	ENSPFOG00000022379	sgk1 (ENSPFOG00000010875)	tbpl1 (ENSPFOG00000010866)	slc2a12 (ENSPFOG00000010839)	tcf21 (ENSPFOG00000010821)	ENSPFOG00000010746	eya4 (ENSPFOG00000010496)	rps12 (ENSPFOG00000010490)	ENSPFOG00000010487
Sailfin molly	MODERN SPECIES	161													ENSPLAG00000005717	iyd (ENSPLAG00000005726)	ppp1r14c (ENSPLAG00000005735)	ENSPLAG00000005762 ##22	armc1l (ENSPLAG00000005788)	mtfr2 (ENSPLAG00000005801)	PDE7B (ENSPLAG00000005847)	myb (ENSPLAG00000006136)	hbs1l (ENSPLAG00000006193)	aldh8a1 (ENSPLAG00000006212)	SGK1 (ENSPLAG00000006229)	slc2a12 (ENSPLAG00000006238)	tbpl1 (ENSPLAG00000006300)	tcf21 (ENSPLAG00000006328)	ENSPLAG00000006339	ENSPLAG00000006351	eya4 (ENSPLAG00000006396)	EYA4 (ENSPLAG00000006415)	rps12 (ENSPLAG00000000634)
Guppy	MODERN SPECIES	452	wdr26b (ENSPREG00000011979)	fez2b (ENSPREG00000011955)	esrrgb (ENSPREG00000011938)	si:ch73-21k16.4 (ENSPREG00000011915)	LPIN1 (ENSPREG00000011884)	ENSPREG00000011866	itsn2a (ENSPREG00000011797)	DDX1 (ENSPREG00000011751)	nbas (ENSPREG00000011581)	lratd1 (ENSPREG00000011535)	MTLN (ENSPREG00000011523)	ENSPREG00000011515	sec63 (ENSPREG00000011443)	iyd (ENSPREG00000011415)	ppp1r14c (ENSPREG00000011411)	ENSPREG00000011368 ##22	armc1l (ENSPREG00000011352)	mtfr2 (ENSPREG00000011342)	PDE7B (ENSPREG00000011323)	myb (ENSPREG00000011303)	hbs1l (ENSPREG00000011270)	aldh8a1 (ENSPREG00000011248)	SGK1 (ENSPREG00000011205)	slc2a12 (ENSPREG00000011173)	tbpl1 (ENSPREG00000011154)	tcf21 (ENSPREG00000011143)	ENSPREG00000011133	eya4 (ENSPREG00000011038)	rps12 (ENSPREG00000010969)	ENSPREG00000010937	ENSPREG00000010900
Platyfish	MODERN SPECIES	6	wdr26b (ENSXMAG00000022833)	fez2b (ENSXMAG00000004732)	esrrgb (ENSXMAG00000004685)	si:ch73-21k16.4 (ENSXMAG00000004679)	ENSXMAG00000004663	GNPAT (ENSXMAG00000004653)	itsn2a (ENSXMAG00000004605)	DDX1 (ENSXMAG00000004555)	nbas (ENSXMAG00000004501)	lratd1 (ENSXMAG00000019549)	MTLN (ENSXMAG00000019548)	ENSXMAG00000004497	sec63 (ENSXMAG00000004462)	ppp1r14c (ENSXMAG00000026801)	iyd (ENSXMAG00000015122)	ENSXMAG00000009495 ##22	armc1l (ENSXMAG00000009487)	mtfr2 (ENSXMAG00000009485)	PDE7B (ENSXMAG00000004423)	myb (ENSXMAG00000004392)	hbs1l (ENSXMAG00000004359)	aldh8a1 (ENSXMAG00000004351)	SGK1 (ENSXMAG00000004339)	slc2a12 (ENSXMAG00000004337)	tbpl1 (ENSXMAG00000004323)	tcf21 (ENSXMAG00000029496)	ENSXMAG00000004321	eya4 (ENSXMAG00000004289)	rps12 (ENSXMAG00000025048)	ENSXMAG00000027762	ENSXMAG00000004285
NAME_4	ANCESTRAL SPECIES	57	ENSGT00390000017627.a.a.a	ENSGT00940000153433.B.a.a	ENSGT00410000025698.a	ENSGT00940000157219.e	ENSGT00520000055570.B.l	ENSGT00940000164632.b.b	ENSGT00940000155936.a.b	ENSGT00940000155678	ENSGT00390000012474	ENSGT00940000161165	ENSGT00390000007551	ENSGT00940000157463.b	ENSGT00390000001965	ENSGT00390000004348	ENSGT00950000182985.b.a	ENSGT00950000182941.a.a.a.a ##22	ENSGT00940000164948	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174
Mummichog	MODERN SPECIES	2255	esrrgb (ENSFHEG00000008797)	si:ch73-21k16.4 (ENSFHEG00000008699)	LPIN1 (ENSFHEG00000008634)	ENSFHEG00000008571	ENSFHEG00000008549	ENSFHEG00000008545	ENSFHEG00000008502	DDX1 (ENSFHEG00000008444)	nbas (ENSFHEG00000008247)	lratd1 (ENSFHEG00000008150)	MTLN (ENSFHEG00000008142)	ENSFHEG00000008128	sec63 (ENSFHEG00000008105)	iyd (ENSFHEG00000008007)	ppp1r14c (ENSFHEG00000007990)	ENSFHEG00000007982 ##22	armc1l (ENSFHEG00000007976)	mtfr2 (ENSFHEG00000007955)	PDE7B (ENSFHEG00000007951)	myb (ENSFHEG00000007889)	hbs1l (ENSFHEG00000006942)	aldh8a1 (ENSFHEG00000006871)	SGK1 (ENSFHEG00000006867)	slc2a12 (ENSFHEG00000006848)	tbpl1 (ENSFHEG00000006840)	tcf21 (ENSFHEG00000006821)
Sheepshead minnow	MODERN SPECIES	800													sec63 (ENSCVAG00000001519)	iyd (ENSCVAG00000000788)	ppp1r14c (ENSCVAG00000001508)	ENSCVAG00000001501 ##22	armc1l (ENSCVAG00000001485)	mtfr2 (ENSCVAG00000001482)	PDE7B (ENSCVAG00000000679)	myb (ENSCVAG00000001471)	hbs1l (ENSCVAG00000001462)	aldh8a1 (ENSCVAG00000001455)	SGK1 (ENSCVAG00000001446)	slc2a12 (ENSCVAG00000001441)	tbpl1 (ENSCVAG00000001436)	tcf21 (ENSCVAG00000001430)
Oryzias	DUPLICATION
Oryzias	ANCESTRAL SPECIES	19	ENSGT00390000017627.a.a.a	ENSGT00940000153433.B.a.a	ENSGT00410000025698.a	ENSGT00940000157219.e	ENSGT00520000055570.B.l	ENSGT00940000164632.b.b	ENSGT00940000155936.a.b	ENSGT00940000155678	ENSGT00390000012474	ENSGT00940000161165	ENSGT00390000007551	ENSGT00940000157463.b	ENSGT00390000001965	ENSGT00390000004348	ENSGT00950000182985.b.a	ENSGT00950000182941.a.a.a.a.c ##22	ENSGT00940000164948	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318	ENSGT00940000157260.s	ENSGT00940000166622	ENSGT00940000159157
Oryzias_b	ANCESTRAL SPECIES	17	ENSGT00390000017627.a.a.a	ENSGT00940000153433.B.a.a	ENSGT00410000025698.a	ENSGT00940000157219.e	ENSGT00520000055570.B.l	ENSGT00940000164632.b.b	ENSGT00940000155936.a.b	ENSGT00940000155678	ENSGT00390000012474	ENSGT00940000161165	ENSGT00390000007551	ENSGT00940000157463.b	ENSGT00390000001965	ENSGT00390000004348	ENSGT00950000182985.b.a	ENSGT00950000182941.a.a.a.a.c ##22	ENSGT00940000164948	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318	ENSGT00940000157260.s	ENSGT00940000166622	ENSGT00940000159157
Indian medaka	MODERN SPECIES	22	DDX1 (ENSOMEG00000017620)	nbas (ENSOMEG00000017572)	lratd1 (ENSOMEG00000017488)	MTLN (ENSOMEG00000000654)	ENSOMEG00000017469	sec63 (ENSOMEG00000000436)	iyd (ENSOMEG00000017325)	ENSOMEG00000017313	ENSOMEG00000017297	aldh16a1 (ENSOMEG00000017260)	ENSOMEG00000017211	ENSOMEG00000017137	ENSOMEG00000017119	ENSOMEG00000017110	eci1 (ENSOMEG00000017097)	ENSOMEG00000017061 ##22	armc1l (ENSOMEG00000016864)	mtfr2 (ENSOMEG00000016843)	PDE7B (ENSOMEG00000016823)	myb (ENSOMEG00000016773)	hbs1l (ENSOMEG00000016715)	aldh8a1 (ENSOMEG00000016670)	SGK1 (ENSOMEG00000016641)	slc2a12 (ENSOMEG00000016577)	tbpl1 (ENSOMEG00000016557)	tcf21 (ENSOMEG00000000415)	eya4 (ENSOMEG00000000909)	rps12 (ENSOMEG00000016337)	ENSOMEG00000016293	ENSOMEG00000016204	sh3bgrl2 (ENSOMEG00000016156)
Javanese ricefish	MODERN SPECIES	16	wdr26b (ENSOJAG00000023174)	fez2b (ENSOJAG00000023093)	esrrgb (ENSOJAG00000023069)	si:ch73-21k16.4 (ENSOJAG00000023061)	LPIN1 (ENSOJAG00000023026)	ENSOJAG00000022908	nbas (ENSOJAG00000022427)	ENSOJAG00000022418	ENSOJAG00000022417	lratd1 (ENSOJAG00000022416)	MTLN (ENSOJAG00000022413)	ENSOJAG00000022408	sec63 (ENSOJAG00000022356)	iyd (ENSOJAG00000022337)	ppp1r14c (ENSOJAG00000022335)	ENSOJAG00000022296 ##22	armc1l (ENSOJAG00000022288)	mtfr2 (ENSOJAG00000022279)	PDE7B (ENSOJAG00000022260)	myb (ENSOJAG00000022248)	hbs1l (ENSOJAG00000021520)	aldh8a1 (ENSOJAG00000021390)	SGK1 (ENSOJAG00000021158)	slc2a12 (ENSOJAG00000021133)	tbpl1 (ENSOJAG00000021124)	tcf21 (ENSOJAG00000021117)	eya4 (ENSOJAG00000020302)	rps12 (ENSOJAG00000020166)	ENSOJAG00000020151	ENSOJAG00000020141	sh3bgrl2 (ENSOJAG00000020129)
Oryzias_a	ANCESTRAL SPECIES	13	ENSGT00940000153634.b.b	ENSGT00390000017627.a.a.a	ENSGT00940000153433.B.a.a	ENSGT00410000025698.a	ENSGT00940000157219.e	ENSGT00520000055570.B.l	ENSGT00940000155936.a.b	ENSGT00940000155678	ENSGT00390000012474	ENSGT00940000161165	ENSGT00390000007551	ENSGT00940000157463.b	ENSGT00390000001965	ENSGT00390000004348	ENSGT00950000182985.b.a	ENSGT00950000182941.a.a.a.a.c ##22	ENSGT00940000164948	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318	ENSGT00940000176295	ENSGT00940000166622	ENSGT00940000159157
Chinese medaka	MODERN SPECIES	796	ENSOSIG00000015744	wdr26b (ENSOSIG00000015800)	fez2b (ENSOSIG00000016042)	esrrgb (ENSOSIG00000016050)	si:ch73-21k16.4 (ENSOSIG00000016052)	ENSOSIG00000016059	ENSOSIG00000016085	ENSOSIG00000016363	nbas (ENSOSIG00000016458)	lratd1 (ENSOSIG00000017350)	MTLN (ENSOSIG00000017351)	ENSOSIG00000017353	sec63 (ENSOSIG00000017436)	iyd (ENSOSIG00000019302)	ppp1r14c (ENSOSIG00000019303)	ENSOSIG00000019309 ##22	armc1l (ENSOSIG00000019313)	mtfr2 (ENSOSIG00000000741)	PDE7B (ENSOSIG00000000802)	myb (ENSOSIG00000002639)	hbs1l (ENSOSIG00000003113)	aldh8a1 (ENSOSIG00000011221)	SGK1 (ENSOSIG00000011225)	slc2a12 (ENSOSIG00000011315)	tbpl1 (ENSOSIG00000011316)	tcf21 (ENSOSIG00000011317)	eya4 (ENSOSIG00000011318)	rps12 (ENSOSIG00000011319)	ENSOSIG00000011324	ENSOSIG00000011325	sh3bgrl2 (ENSOSIG00000011327)
Japanese Medaka HdrR	MODERN SPECIES	16	wdr26b (ENSORLG00000016845)	fez2b (ENSORLG00000016834)	errg2 (ENSORLG00000016819)	si:ch73-21k16.4 (ENSORLG00000016810)	LPIN1 (ENSORLG00000016787)	ENSORLG00000016750	itsn2a (ENSORLG00000016740)	DDX1 (ENSORLG00000016709)	nbas (ENSORLG00000016677)	lratd1 (ENSORLG00000016642)	ENSORLG00000025382	sec63 (ENSORLG00000016637)	iyd (ENSORLG00000028824)	ppp1r14c (ENSORLG00000025238)	ENSORLG00000024666 ##22	ENSORLG00000016611 ##22	ENSORLG00000029692	armc1l (ENSORLG00000016600)	mtfr2 (ENSORLG00000016588)	PDE7B (ENSORLG00000016583)	myb (ENSORLG00000016573)	hbs1l (ENSORLG00000016559)	aldh8a1 (ENSORLG00000016537)	SGK1 (ENSORLG00000016520)	slc2a12 (ENSORLG00000016511)	tbpl1 (ENSORLG00000029396)	tcf21 (ENSORLG00000021964)	rps12 (ENSORLG00000016460)	eya4 (ENSORLG00000016484)	ENSORLG00000023653	ENSORLG00000016446
Oryzias	ANCESTRAL SPECIES																	ENSGT00950000182941.a.a.a.a.d ##22
Oryzias_a	ANCESTRAL SPECIES																	ENSGT00950000182941.a.a.a.a.d ##22
Japanese Medaka HdrR	MODERN SPECIES	16	ENSORLG00000016865	wdr26b (ENSORLG00000016845)	fez2b (ENSORLG00000016834)	errg2 (ENSORLG00000016819)	si:ch73-21k16.4 (ENSORLG00000016810)	LPIN1 (ENSORLG00000016787)	ENSORLG00000016750	itsn2a (ENSORLG00000016740)	DDX1 (ENSORLG00000016709)	nbas (ENSORLG00000016677)	lratd1 (ENSORLG00000016642)	ENSORLG00000025382	sec63 (ENSORLG00000016637)	iyd (ENSORLG00000028824)	ppp1r14c (ENSORLG00000025238)	ENSORLG00000024666 ##22	ENSORLG00000016611 ##22	ENSORLG00000029692	armc1l (ENSORLG00000016600)	mtfr2 (ENSORLG00000016588)	PDE7B (ENSORLG00000016583)	myb (ENSORLG00000016573)	hbs1l (ENSORLG00000016559)	aldh8a1 (ENSORLG00000016537)	SGK1 (ENSORLG00000016520)	slc2a12 (ENSORLG00000016511)	tbpl1 (ENSORLG00000029396)	tcf21 (ENSORLG00000021964)	rps12 (ENSORLG00000016460)	eya4 (ENSORLG00000016484)	ENSORLG00000023653
Ovalentaria_B	ANCESTRAL SPECIES	17	ENSGT00940000153433.B.a.a	ENSGT00410000025698.a	ENSGT00940000157219.e	ENSGT00520000055570.B.l	ENSGT00940000171406	ENSGT00940000164632.b.b	ENSGT00940000155936.a.b	ENSGT00940000155678	ENSGT00390000012474	ENSGT00940000161165	ENSGT00390000007551	ENSGT00940000157463.b	ENSGT00390000001965	ENSGT00390000004348	ENSGT00950000182985.b.a	ENSGT00950000182941.a.a.a.a ##22	ENSGT00940000164948	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156248	ENSGT00730000111130	ENSGT00390000018525.b	ENSGT01080000257573	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT01030000234583.a.a.c.b.b	ENSGT00950000182978.A.a.a
Pomacentridae	ANCESTRAL SPECIES	82	ENSGT00390000017627.a.a.a	ENSGT00940000153433.B.a.a	ENSGT00410000025698.a	ENSGT00940000157219.e	ENSGT00520000055570.B.l	ENSGT00940000171406	ENSGT00940000164632.b.b	ENSGT00940000155936.a.b	ENSGT00940000155678	ENSGT00390000012474	ENSGT00940000161165	ENSGT00390000007551	ENSGT00390000001965	ENSGT00390000004348	ENSGT00950000182985.b.a	ENSGT00950000182941.a.a.a.a ##22	ENSGT00940000164948	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318	ENSGT00940000171557
Pomacentridae_A	ANCESTRAL SPECIES	33	ENSGT00390000017627.a.a.a	ENSGT00940000153433.B.a.a	ENSGT00410000025698.a	ENSGT00940000157219.e	ENSGT00520000055570.B.l	ENSGT00940000171406	ENSGT00940000164632.b.b	ENSGT00940000155936.a.b	ENSGT00940000155678	ENSGT00390000012474	ENSGT00940000161165	ENSGT00390000007551	ENSGT00390000001965	ENSGT00390000004348	ENSGT00950000182985.b.a	ENSGT00950000182941.a.a.a.a ##22	ENSGT00940000164948	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318	ENSGT00940000171557	ENSGT00940000156535	ENSGT00940000165962
Amphiprion	ANCESTRAL SPECIES	79	ENSGT00390000017627.a.a.a	ENSGT00940000153433.B.a.a	ENSGT00410000025698.a	ENSGT00940000157219.e.e	ENSGT00520000055570.B.l	ENSGT00940000171406	ENSGT00940000164632.b.b.e	ENSGT00940000155936.a.b	ENSGT00940000155678	ENSGT00390000012474	ENSGT00940000161165	ENSGT00390000007551	ENSGT00390000001965	ENSGT00390000004348	ENSGT00950000182985.b.a	ENSGT00950000182941.a.a.a.a ##22	ENSGT00940000164948	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000016168.a	ENSGT01070000253766.C.o.a	ENSGT00940000157818	ENSGT00390000014037.c
Orange clownfish	MODERN SPECIES	2	esrrgb (ENSAPEG00000007287)	si:ch73-21k16.4 (ENSAPEG00000007324)	ENSAPEG00000007340	ENSAPEG00000007351	ENSAPEG00000007408	ENSAPEG00000007581	ENSAPEG00000007637	ENSAPEG00000007662	DDX1 (ENSAPEG00000007699)	nbas (ENSAPEG00000007860)	lratd1 (ENSAPEG00000008006)	MTLN (ENSAPEG00000008017)	sec63 (ENSAPEG00000008042)	iyd (ENSAPEG00000008105)	ppp1r14c (ENSAPEG00000008127)	ENSAPEG00000008143 ##22	armc1l (ENSAPEG00000008177)	mtfr2 (ENSAPEG00000008200)	PDE7B (ENSAPEG00000008211)	myb (ENSAPEG00000008279)	hbs1l (ENSAPEG00000008320)	aldh8a1 (ENSAPEG00000008394)	SGK1 (ENSAPEG00000008427)	slc2a12 (ENSAPEG00000008439)	tbpl1 (ENSAPEG00000008485)	ENSAPEG00000008512	ENSAPEG00000008537	tcf21 (ENSAPEG00000008558)	eya4 (ENSAPEG00000008574)	ccm2 (ENSAPEG00000008596)	ENSAPEG00000008670
Clown anemonefish	MODERN SPECIES	3200													sec63 (ENSAOCG00000020948)	iyd (ENSAOCG00000020839)	ppp1r14c (ENSAOCG00000020809)	ENSAOCG00000020799 ##22
Spiny chromis	MODERN SPECIES	1829												MTLN (ENSAPOG00000000648)	sec63 (ENSAPOG00000022858)	iyd (ENSAPOG00000000652)	ppp1r14c (ENSAPOG00000022941)	ENSAPOG00000022962 ##22	armc1l (ENSAPOG00000022976)
Cichlidae	ANCESTRAL SPECIES	12	ENSGT00940000153433.B.a.a	ENSGT00410000025698.a	ENSGT00940000157219.e	ENSGT00520000055570.B.l	ENSGT00940000171406	ENSGT00940000164632.b.b	ENSGT00940000155936.a.b	ENSGT00940000155678	ENSGT00390000012474	ENSGT00940000161165	ENSGT00390000007551	ENSGT00940000157463.b	ENSGT00390000001965	ENSGT00390000004348	ENSGT00950000182985.b.a	ENSGT00950000182941.a.a.a.a ##22	ENSGT00940000164948	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156248	ENSGT00730000111130	ENSGT00390000018525.b	ENSGT01080000257573	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT01030000234583.a.a.c.b.b	ENSGT00950000182978.A.a.a
Midas cichlid	MODERN SPECIES	808	esrrgb (ENSACIG00000017646)	si:ch73-21k16.4 (ENSACIG00000017628)	LPIN1 (ENSACIG00000017600)	GNPAT (ENSACIG00000017532)	ENSACIG00000017499	ENSACIG00000017486	ENSACIG00000017465	DDX1 (ENSACIG00000017422)	nbas (ENSACIG00000017352)	lratd1 (ENSACIG00000017335)	MTLN (ENSACIG00000017329)	ENSACIG00000017322	sec63 (ENSACIG00000017297)	iyd (ENSACIG00000017286)	ppp1r14c (ENSACIG00000017276)	ENSACIG00000017270 ##22	armc1l (ENSACIG00000017255)	mtfr2 (ENSACIG00000017191)	PDE7B (ENSACIG00000017160)	myb (ENSACIG00000017117)	ENSACIG00000017111	hbs1l (ENSACIG00000017087)	aldh8a1 (ENSACIG00000017065)	SGK1 (ENSACIG00000017047)	slc2a12 (ENSACIG00000017034)	tbpl1 (ENSACIG00000017023)	tcf21 (ENSACIG00000016997)	eya4 (ENSACIG00000016949)	rps12 (ENSACIG00000016913)	ENSACIG00000016877	ENSACIG00000016795
Pseudocrenilabrinae	ANCESTRAL SPECIES	6	ENSGT00940000153433.B.a.a	ENSGT00410000025698.a	ENSGT00940000157219.e	ENSGT00520000055570.B.l.g	ENSGT00940000171406	ENSGT00940000164632.b.b	ENSGT00940000155936.a.b	ENSGT00940000155678	ENSGT00390000012474	ENSGT00940000161165	ENSGT00390000007551	ENSGT00940000157463.b	ENSGT00390000001965	ENSGT00390000004348	ENSGT00950000182985.b.a	ENSGT00950000182941.a.a.a.a ##22	ENSGT00940000164948	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT01030000234583.a.a.c.b.b	ENSGT00950000182978.A.a.a	ENSGT00390000018318	ENSGT00940000166622.m.b	ENSGT00940000171557
Nile tilapia	MODERN SPECIES	6	fez2b (ENSONIG00000000581)	esrrgb (ENSONIG00000000573)	si:ch73-21k16.4 (ENSONIG00000000570)	LPIN1 (ENSONIG00000000554)	ENSONIG00000000551	ENSONIG00000033490	itsn2a (ENSONIG00000000536)	DDX1 (ENSONIG00000000513)	nbas (ENSONIG00000000502)	lratd1 (ENSONIG00000020744)	MTLN (ENSONIG00000020743)	ENSONIG00000029394	sec63 (ENSONIG00000000500)	iyd (ENSONIG00000000497)	ppp1r14c (ENSONIG00000000495)	ENSONIG00000000489 ##22	armc1l (ENSONIG00000027909)	mtfr2 (ENSONIG00000000482)	PDE7B (ENSONIG00000000476)	myb (ENSONIG00000000469)	hbs1l (ENSONIG00000000460)	aldh8a1 (ENSONIG00000000459)	SGK1 (ENSONIG00000000452)	slc2a12 (ENSONIG00000000450)	tbpl1 (ENSONIG00000000447)	tcf21 (ENSONIG00000029782)	ENSONIG00000000441	eya4 (ENSONIG00000000436)	ENSONIG00000033027	rps12 (ENSONIG00000000435)	ENSONIG00000000431
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	3	ENSGT00940000153433.B.a.a	ENSGT00410000025698.a	ENSGT00940000157219.e	ENSGT00520000055570.B.l.g	ENSGT00940000171406	ENSGT00940000164632.b.b	ENSGT00940000155936.a.b	ENSGT00940000155678	ENSGT00390000012474	ENSGT00940000161165	ENSGT00390000007551	ENSGT00940000157463.b	ENSGT00390000001965	ENSGT00390000004348	ENSGT00950000182985.b.a	ENSGT00950000182941.a.a.a.a ##22	ENSGT00940000164948	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT01030000234583.a.a.c.b.b	ENSGT00950000182978.A.a.a	ENSGT00390000018318	ENSGT00940000166622.m.b	ENSGT00940000171557
Haplochromini	ANCESTRAL SPECIES	13	ENSGT00940000153433.B.a.a	ENSGT00410000025698.a	ENSGT00940000157219.e	ENSGT00520000055570.B.l.g	ENSGT00940000171406	ENSGT00940000164632.b.b	ENSGT00940000155936.a.b	ENSGT00940000155678	ENSGT00390000012474	ENSGT00940000161165	ENSGT00390000007551	ENSGT00940000157463.b	ENSGT00390000001965	ENSGT00390000004348	ENSGT00950000182985.b.a	ENSGT00950000182941.a.a.a.a ##22	ENSGT00940000164948	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156248	ENSGT00940000156274.m	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT01030000234583.a.a.c.b.b	ENSGT00950000182978.A.a.a	ENSGT00390000018318	ENSGT00940000166622.m.b	ENSGT00940000171557
Burton s mouthbrooder	MODERN SPECIES	276	esrrgb (ENSHBUG00000014418)	si:ch73-21k16.4 (ENSHBUG00000014399)	LPIN1 (ENSHBUG00000014389)	ENSHBUG00000014327	ENSHBUG00000014163	ENSHBUG00000014158	ENSHBUG00000014114	DDX1 (ENSHBUG00000014069)	nbas (ENSHBUG00000014019)	lratd1 (ENSHBUG00000013710)	MTLN (ENSHBUG00000013695)	ENSHBUG00000013675	sec63 (ENSHBUG00000013656)	iyd (ENSHBUG00000013642)	ppp1r14c (ENSHBUG00000013633)	ENSHBUG00000013625 ##22	armc1l (ENSHBUG00000013581)	mtfr2 (ENSHBUG00000013560)	PDE7B (ENSHBUG00000013545)	myb (ENSHBUG00000013437)	hbs1l (ENSHBUG00000013424)	aldh8a1 (ENSHBUG00000013404)	SGK1 (ENSHBUG00000013374)	slc2a12 (ENSHBUG00000013283)	tbpl1 (ENSHBUG00000013274)	tcf21 (ENSHBUG00000013252)	eya4 (ENSHBUG00000013228)	rps12 (ENSHBUG00000013168)	ENSHBUG00000013129	ENSHBUG00000013114	ENSHBUG00000013097
Haplochromini_A	ANCESTRAL SPECIES	11	ENSGT00940000153433.B.a.a	ENSGT00410000025698.a	ENSGT00940000157219.e	ENSGT00520000055570.B.l.g	ENSGT00940000171406	ENSGT00940000164632.b.b	ENSGT00940000155936.a.b	ENSGT00940000155678	ENSGT00390000012474	ENSGT00940000161165	ENSGT00390000007551	ENSGT00940000157463.b	ENSGT00390000001965	ENSGT00390000004348	ENSGT00950000182985.b.a	ENSGT00950000182941.a.a.a.a ##22	ENSGT00940000164948	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156248	ENSGT00940000156274.m	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT01030000234583.a.a.c.b.b	ENSGT00950000182978.A.a.a	ENSGT00390000018318	ENSGT00940000157260.s	ENSGT00940000166622.m.a
Haplochromini_B	ANCESTRAL SPECIES	22	ENSGT00940000153433.B.a.a	ENSGT00410000025698.a	ENSGT00940000157219.e	ENSGT00520000055570.B.l.g	ENSGT00940000171406	ENSGT00940000164632.b.b	ENSGT00940000155936.a.b	ENSGT00940000155678	ENSGT00390000012474	ENSGT00940000161165	ENSGT00390000007551	ENSGT00940000157463.b	ENSGT00390000001965	ENSGT00390000004348	ENSGT00950000182985.b.a	ENSGT00950000182941.a.a.a.a ##22	ENSGT00940000164948	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156248	ENSGT00940000156274.m	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318	ENSGT00950000183145.A.b.a.s.b	ENSGT00940000157260.s	ENSGT00940000166622.m.a
Zebra mbuna	MODERN SPECIES	1097	esrrgb (ENSMZEG00005015027)	si:ch73-21k16.4 (ENSMZEG00005015040)	LPIN1 (ENSMZEG00005015060)	ENSMZEG00005015111	ENSMZEG00005015169	ENSMZEG00005015176	ENSMZEG00005015185	DDX1 (ENSMZEG00005015207)	nbas (ENSMZEG00005015265)	lratd1 (ENSMZEG00005015338)	MTLN (ENSMZEG00005015349)	ENSMZEG00005015353	sec63 (ENSMZEG00005015369)	iyd (ENSMZEG00005015400)	ppp1r14c (ENSMZEG00005015409)	ENSMZEG00005015434 ##22	armc1l (ENSMZEG00005015470)	mtfr2 (ENSMZEG00005015488)	ENSMZEG00005015495	PDE7B (ENSMZEG00005015508)	myb (ENSMZEG00005015531)	hbs1l (ENSMZEG00005015575)	aldh8a1 (ENSMZEG00005015598)	SGK1 (ENSMZEG00005015609)	slc2a12 (ENSMZEG00005015652)	tbpl1 (ENSMZEG00005015661)	ptk2bb (ENSMZEG00005015713)	CHRNA2 (ENSMZEG00005015764)	ENSMZEG00005016044	nme6 (ENSMZEG00005016052)	eif2b4 (ENSMZEG00005016074)
Eastern happy	MODERN SPECIES	6	si:ch73-21k16.4 (ENSACLG00000008706)	LPIN1 (ENSACLG00000008723)	ENSACLG00000008767	ENSACLG00000008775	ENSACLG00000008778	ENSACLG00000008784	ENSACLG00000008834	DDX1 (ENSACLG00000008850)	nbas (ENSACLG00000008921)	lratd1 (ENSACLG00000009785)	MTLN (ENSACLG00000009786)	ENSACLG00000009788	sec63 (ENSACLG00000009789)	iyd (ENSACLG00000009842)	ppp1r14c (ENSACLG00000009853)	ENSACLG00000009863 ##22	armc1l (ENSACLG00000009933)	mtfr2 (ENSACLG00000009948)	PDE7B (ENSACLG00000010402)	myb (ENSACLG00000010427)	hbs1l (ENSACLG00000010469)	aldh8a1 (ENSACLG00000010545)	ENSACLG00000010561	SGK1 (ENSACLG00000010577)	slc2a12 (ENSACLG00000010666)	tbpl1 (ENSACLG00000010680)	tcf21 (ENSACLG00000010780)	eya4 (ENSACLG00000010790)	rps12 (ENSACLG00000011016)	ENSACLG00000011113	ENSACLG00000011117
P. nyererei	MODERN SPECIES	456	fez2b (ENSPNYG00000014479)	esrrgb (ENSPNYG00000014228)	si:ch73-21k16.4 (ENSPNYG00000014144)	LPIN1 (ENSPNYG00000014077)	ENSPNYG00000014030	ENSPNYG00000013999	ENSPNYG00000013957	DDX1 (ENSPNYG00000013839)	nbas (ENSPNYG00000013714)	lratd1 (ENSPNYG00000013679)	MTLN (ENSPNYG00000013665)	ENSPNYG00000013652	sec63 (ENSPNYG00000013605)	iyd (ENSPNYG00000013579)	ppp1r14c (ENSPNYG00000013563)	ENSPNYG00000013545 ##22	armc1l (ENSPNYG00000013518)	mtfr2 (ENSPNYG00000013503)	PDE7B (ENSPNYG00000013462)	myb (ENSPNYG00000013408)	hbs1l (ENSPNYG00000013360)	aldh8a1 (ENSPNYG00000013334)	SGK1 (ENSPNYG00000013283)	slc2a12 (ENSPNYG00000013266)	tbpl1 (ENSPNYG00000013246)	tcf21 (ENSPNYG00000013233)	ENSPNYG00000013220	eya4 (ENSPNYG00000013081)	rps12 (ENSPNYG00000012958)	ENSPNYG00000012929	ENSPNYG00000012911
Pinecone sodierfish	MODERN SPECIES	16							DDX1 (ENSMMDG00005008779)	nbas (ENSMMDG00005007487)	lratd1 (ENSMMDG00005007437)	MTLN (ENSMMDG00005007435)	ENSMMDG00005007434	ENSMMDG00005007432	sec63 (ENSMMDG00005007427)	iyd (ENSMMDG00005007418)	ppp1r14c (ENSMMDG00005007415)	ENSMMDG00005007408 ##22	armc1l (ENSMMDG00005007406)	mtfr2 (ENSMMDG00005007404)	PDE7B (ENSMMDG00005006790)	myb (ENSMMDG00005006547)	hbs1l (ENSMMDG00005006508)	aldh8a1 (ENSMMDG00005006495)	SGK1 (ENSMMDG00005006445)	slc2a12 (ENSMMDG00005006427)	tbpl1 (ENSMMDG00005006420)	tcf21 (ENSMMDG00005006416)	eya4 (ENSMMDG00005006387)	rps12 (ENSMMDG00005006376)	ENSMMDG00005006360	sh3bgrl2 (ENSMMDG00005006358)	fam167ab (ENSMMDG00005006355)
Cod	MODERN SPECIES	13	ENSGMOG00000010093	ENSGMOG00000027198	fam167ab (ENSGMOG00000036214)	ccm2 (ENSGMOG00000010055)	xkr6b (ENSGMOG00000010050)	mtmr9 (ENSGMOG00000010038)	tdh (ENSGMOG00000010028)	pinx1 (ENSGMOG00000010002)	sox7 (ENSGMOG00000022893)	ENSGMOG00000035608	ENSGMOG00000009969	ENSGMOG00000009960	ENSGMOG00000025678	ENSGMOG00000009937	znf513a (ENSGMOG00000024500)	ENSGMOG00000012208 ##22	armc1l (ENSGMOG00000012204)	mtfr2 (ENSGMOG00000019305)	ENSGMOG00000018434	myb (ENSGMOG00000011856)	hbs1l (ENSGMOG00000011843)	ENSGMOG00000011815	ENSGMOG00000036990	ENSGMOG00000006473	ENSGMOG00000006459	ehd3 (ENSGMOG00000006447)	stum (ENSGMOG00000006437)	ENSGMOG00000006422	ENSGMOG00000030148	EPB41L2 (ENSGMOG00000006351)	tmem200a (ENSGMOG00000027467)
Protacanthopterygii	ANCESTRAL SPECIES	120	ENSGT00560000077266.a	ENSGT00940000159157	ENSGT00940000157260.t.t	ENSGT00940000171557	ENSGT00390000018318	ENSGT00950000182978.A.a.a	ENSGT00940000160174	ENSGT00940000155712	ENSGT00940000159614	ENSGT00940000155726	ENSGT00940000156799	ENSGT00940000156274	ENSGT00940000156248.e.b	ENSGT00950000183215.c.a.a	ENSGT00940000164948	ENSGT00950000182941.a.a.a.a ##22	ENSGT00950000182985.b.a
Salmoninae	ANCESTRAL SPECIES	995												ENSGT00940000155726.qb	ENSGT00940000156274.p	ENSGT00940000156248.e.b.b	ENSGT00940000164948	ENSGT00950000182941.a.a.a.a ##22	ENSGT00950000182985.b.a
Huchen	MODERN SPECIES	8187																ENSHHUG00000002619 ##22
Salmoninae_a	ANCESTRAL SPECIES	68	ENSGT00940000165540.d	ENSGT00390000004923.B.a	ENSGT00940000154242.a.d	ENSGT00940000161092.d	ENSGT00390000014037.c.h	ENSGT00940000157818	ENSGT01070000253766.C.o.a.g.b	ENSGT00390000016168.a	ENSGT00940000159097	ENSGT00560000077266.a	ENSGT00940000160174.f	ENSGT00940000155726.qb	ENSGT00940000156274.p	ENSGT00940000156248.e.b.b	ENSGT00940000164948	ENSGT00950000182941.a.a.a.a ##22	ENSGT00950000182985.b.a.h	ENSGT00940000161165.i	ENSGT00940000155936.a.b	ENSGT00940000166083.e.a	ENSGT01040000240523	ENSGT00950000183107.a.a	ENSGT00940000155566.w	ENSGT00950000183117.b	ENSGT00490000043329.a.b.g.b.m	ENSGT00940000155459.x.a	ENSGT00940000153739.a.b.s.g
Salmo	ANCESTRAL SPECIES	52	ENSGT00940000165540.d	ENSGT00390000004923.B.a	ENSGT00940000154242.a.d	ENSGT00940000161092.d	ENSGT00390000014037.c.h	ENSGT00940000157818	ENSGT01070000253766.C.o.a.g.b	ENSGT00390000016168.a	ENSGT00940000159097	ENSGT00560000077266.a	ENSGT00940000171557	ENSGT00940000160174.f	ENSGT00940000156274.p	ENSGT00940000156248.e.b.b	ENSGT00940000164948	ENSGT00950000182941.a.a.a.a ##22	ENSGT00950000182985.b.a.h	ENSGT00940000161165.i	ENSGT00940000155936.a.b	ENSGT00940000166083.e.a	ENSGT01040000240523	ENSGT00950000183107.a.a	ENSGT00940000155566.w	ENSGT00950000183117.b	ENSGT00490000043329.a.b.g.b.m	ENSGT00940000155459.x.a	ENSGT00940000153739.a.b.s.g
Atlantic salmon	MODERN SPECIES	6	ENSSSAG00000062409	ENSSSAG00000118670	ENSSSAG00000087736	XKR6 (ENSSSAG00000053569)	ENSSSAG00000048104	ENSSSAG00000094955	ENSSSAG00000084478	SH3L3 (ENSSSAG00000048914)	rps12 (ENSSSAG00000100974)	tcf21 (ENSSSAG00000096772)	SGK1 (ENSSSAG00000058955)	ENSSSAG00000089812	HBS1L (ENSSSAG00000065234)	MYB (ENSSSAG00000065168)	armc1l (ENSSSAG00000100347)	ENSSSAG00000110032 ##22	ENSSSAG00000085875	ENSSSAG00000111755	ENSSSAG00000048091	ENSSSAG00000002148	ENSSSAG00000111511	ENSSSAG00000117369	hmgn3 (ENSSSAG00000099936)	ENSSSAG00000097093	ENSSSAG00000097427	ENSSSAG00000054711	tbx18 (ENSSSAG00000107202)	selenoi (ENSSSAG00000059365)	ENSSSAG00000081879	ENSSSAG00000112119	KIF3C (ENSSSAG00000120471)
River trout	MODERN SPECIES	62															ppp1r14c (ENSSTUG00000020966)	ENSSTUG00000020972 ##22	selenoi (ENSSTUG00000020990)	ENSSTUG00000021004	ost4 (ENSSTUG00000021015)	mapre3b (ENSSTUG00000021022)	dnmt3aa (ENSSTUG00000021092)	KIF3C (ENSSTUG00000024120)	rab10 (ENSSTUG00000024138)	ENSSTUG00000024160	ENSSTUG00000024171	ENSSTUG00000024181	tfap2d (ENSSTUG00000024189)
Oncorhynchus	ANCESTRAL SPECIES	55	ENSGT00940000165540.d	ENSGT00390000004923.B.a	ENSGT00940000175432	ENSGT00940000161092.d	ENSGT00390000014037.c.h	ENSGT00940000157818	ENSGT01070000253766.C.o.a.g.b	ENSGT00390000016168.a	ENSGT00940000159097	ENSGT00560000077266.a	ENSGT00940000160174.f	ENSGT00940000155726.qb	ENSGT00940000156274.p	ENSGT00940000156248.e.b.b	ENSGT00940000164948	ENSGT00950000182941.a.a.a.a ##22	ENSGT00950000182985.b.a.h	ENSGT00940000161165.i	ENSGT00940000155936.a.b	ENSGT00940000166083.e.a	ENSGT01040000240523	ENSGT00950000183107.a.a	ENSGT00940000155566.w	ENSGT00950000183117.b	ENSGT00390000016516.f.a	ENSGT00490000043329.a.b.g.b.m	ENSGT00940000155459.x.a	ENSGT00940000153739.a.b.s.g	ENSGT00940000156975.n.b	ENSGT00950000182848.d.f
Oncorhynchus_a	ANCESTRAL SPECIES	81	ENSGT00940000158687.a.a.c	ENSGT00940000165540.d	ENSGT00390000004923.B.a	ENSGT00940000175432	ENSGT00940000161092.d	ENSGT00390000014037.c.h	ENSGT00940000157818	ENSGT01070000253766.C.o.a.g.b	ENSGT00390000016168.a	ENSGT00940000159097	ENSGT00560000077266.a	ENSGT00940000160174.f	ENSGT00940000156274.p	ENSGT00940000156248.e.b.b	ENSGT00940000164948	ENSGT00950000182941.a.a.a.a ##22	ENSGT00950000182985.b.a.h	ENSGT00940000161165.i	ENSGT00940000155936.a.b	ENSGT00940000166083.e.a	ENSGT01040000240523	ENSGT00950000183107.a.a	ENSGT00940000155566.w	ENSGT00950000183117.b	ENSGT00390000016516.e	ENSGT00490000043329.a.b.g.b.m
Coho salmon	MODERN SPECIES	3	FNDC4 (ENSOKIG00005008990)	ENSOKIG00005008980	sox7 (ENSOKIG00005008971)	tdh (ENSOKIG00005008939)	mtmr9 (ENSOKIG00005008912)	ccm2 (ENSOKIG00005008509)	fam167ab (ENSOKIG00005008442)	ENSOKIG00005008429	zgc:153284 (ENSOKIG00005008413)	rps12 (ENSOKIG00005008392)	ENSOKIG00005008385	tcf21 (ENSOKIG00005008375)	hbs1l (ENSOKIG00005008024)	ENSOKIG00005007893	armc1l (ENSOKIG00005007864)	ENSOKIG00005007821 ##22	ENSOKIG00005007810	PPP1R14C (ENSOKIG00005007794)	ENSOKIG00005007781	lratd1 (ENSOKIG00005007751)	ENSOKIG00005007745	runx2b (ENSOKIG00005007701)	ENSOKIG00005007679	PHIP (ENSOKIG00005006050)	tbx18 (ENSOKIG00005005781)	selenoi (ENSOKIG00005005717)	ost4 (ENSOKIG00005005701)	MAPRE3 (ENSOKIG00005005678)	KIF3C (ENSOKIG00005005638)	rab10 (ENSOKIG00005005622)	tfap2d (ENSOKIG00005005616)
Rainbow trout	MODERN SPECIES	29	ENSOMYG00000055531	ENSOMYG00000028884	ENSOMYG00000053991	KIF3C (ENSOMYG00000025146)	ENSOMYG00000063999	ENSOMYG00000060536	DNMT3A (ENSOMYG00000008370)	ENSOMYG00000067532	ENSOMYG00000063049	ENSOMYG00000055202	ENSOMYG00000008519	ENSOMYG00000008565	ENSOMYG00000062251	ENSOMYG00000070205	ENSOMYG00000001421	ENSOMYG00000054045 ##22	ENSOMYG00000019693	ENSOMYG00000060391	ENSOMYG00000068643	ENSOMYG00000077823	ENSOMYG00000064844	ENSOMYG00000027370	ENSOMYG00000016143	ENSOMYG00000063433	ENSOMYG00000071634
Northern pike	MODERN SPECIES	17	ENSELUG00000005851	sh3bgrl2 (ENSELUG00000005914)	ENSELUG00000031944	rps12 (ENSELUG00000005935)	eya4 (ENSELUG00000006225)	tcf21 (ENSELUG00000006291)	tbpl1 (ENSELUG00000006318)	slc2a12 (ENSELUG00000006333)	SGK1 (ENSELUG00000000202)	ENSELUG00000030676	aldh8a1 (ENSELUG00000006417)	hbs1l (ENSELUG00000006444)	myb (ENSELUG00000006491)	mtfr2 (ENSELUG00000006523)	armc1l (ENSELUG00000006566)	ENSELUG00000006639 ##22	ppp1r14c (ENSELUG00000030754)	DDX1 (ENSELUG00000006743)	nbas (ENSELUG00000007088)	ENSELUG00000033088	lratd1 (ENSELUG00000025774)	sec63 (ENSELUG00000007214)	iyd (ENSELUG00000007281)	itsn2a (ENSELUG00000007309)	ENSELUG00000007344	ENSELUG00000007505	runx2b (ENSELUG00000007656)	ENSELUG00000025146	clic5b (ENSELUG00000007750)	enpp5 (ENSELUG00000007776)	ENSELUG00000033400
Osteoglossiformes	ANCESTRAL SPECIES	16						ENSGT00940000153804.A	ENSGT00940000155086.A.h	ENSGT00530000063558.B	ENSGT00390000011877	ENSGT00390000013931	ENSGT01030000234626.B	ENSGT00550000074878	ENSGT00940000157723	ENSGT00390000004348	ENSGT00950000182985.b.a	ENSGT00950000182941.a.a.a.a ##22	ENSGT00950000183163.a.b ##23	ENSGT00940000164948	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156248.oc.b	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000156399.vb	ENSGT00940000164496.b	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318
Asian bonytongue	MODERN SPECIES		SLC4A11 (ENSSFOG00015018690)	EIF2AK3 (ENSSFOG00015018609)	zfyve28 (ENSSFOG00015027771)	foxi2 (ENSSFOG00015026749)	drc1 (ENSSFOG00015018560)	OTOF (ENSSFOG00015018253)	sod2 (ENSSFOG00015018195)	wtap (ENSSFOG00015032191)	acat2 (ENSSFOG00015018150)	tcp1 (ENSSFOG00015018108)	ENSSFOG00015018085	PLEKHG1 (ENSSFOG00015024237)	iyd (ENSSFOG00015018043)	ppp1r14c (ENSSFOG00015018031)	ENSSFOG00015018022	MAP7 (ENSSFOG00015017910) ##22	BCLAF1 (ENSSFOG00015017853) ##23	armc1l (ENSSFOG00015017825)	mtfr2 (ENSSFOG00015017810)	MYB (ENSSFOG00015017613)	hbs1l (ENSSFOG00015017544)	aldh8a1 (ENSSFOG00015033318)	sgk1 (ENSSFOG00015017351)	slc2a12 (ENSSFOG00015017339)	tbpl1 (ENSSFOG00015017311)	tcf21 (ENSSFOG00015024810)	eya4 (ENSSFOG00015017200)	rps12 (ENSSFOG00015017146)	ENSSFOG00015024872	sh3bgrl2 (ENSSFOG00015030166)	LCA5 (ENSSFOG00015030512)
P. kingsleyae	MODERN SPECIES	82	ENSPKIG00000022375	lft1 (ENSPKIG00000022403)	cdc42bpab (ENSPKIG00000022461)	ENSPKIG00000022561	fzd3a (ENSPKIG00000022575)	OTOF (ENSPKIG00000022619)	FNDC1 (ENSPKIG00000022686)	sod2 (ENSPKIG00000022722)	wtap (ENSPKIG00000022748)	wtap (ENSPKIG00000022767)	acat2 (ENSPKIG00000022793)	tcp1 (ENSPKIG00000022823)	PLEKHG1 (ENSPKIG00000022866)	iyd (ENSPKIG00000022903)	ppp1r14c (ENSPKIG00000022914)	MAP7 (ENSPKIG00000022970) ##22	BCLAF1 (ENSPKIG00000023059) ##23	ENSPKIG00000023071 ##23	armc1l (ENSPKIG00000023085)	mtfr2 (ENSPKIG00000023105)	PDE7B (ENSPKIG00000023116)	MYB (ENSPKIG00000023135)	hbs1l (ENSPKIG00000023171)	aldh8a1 (ENSPKIG00000023217)	ENSPKIG00000023230	SGK1 (ENSPKIG00000023267)	laptm4a (ENSPKIG00000023354)	matn3a (ENSPKIG00000023389)	ttc32 (ENSPKIG00000023398)	zpax1 (ENSPKIG00000023416)	kcns3b (ENSPKIG00000023444)
Osteoglossocephalai	ANCESTRAL SPECIES	817																ENSGT00950000182941.a.a.a.b ##22	ENSGT00940000167949
Clupeocephala	ANCESTRAL SPECIES	744																ENSGT00950000182941.a.a.a.b ##22	ENSGT00940000167949
Otomorpha	ANCESTRAL SPECIES	166																ENSGT00950000182941.a.a.a.b ##22	ENSGT00940000156509	ENSGT00940000156674	ENSGT00940000155913.c	ENSGT00390000011642.f	ENSGT00940000154481.a.a	ENSGT00390000012924.a	ENSGT00390000013337	ENSGT00940000158401	ENSGT00730000111244.a.b	ENSGT00940000157477	ENSGT01050000244948.c.b.a.a.a	ENSGT00510000047616.a.b	ENSGT00940000155141.w.a	ENSGT00940000175851	ENSGT00940000158349
Otophysi	ANCESTRAL SPECIES	21	ENSGT00390000004599	ENSGT00390000008624	ENSGT00940000158221	ENSGT00960000186719	ENSGT00940000154618	ENSGT00940000154482.b.b.b	ENSGT00940000159392	ENSGT00940000166774	ENSGT00390000004917	ENSGT00390000002211	ENSGT00940000157960.k.a	ENSGT00940000154928.c.a.a	ENSGT00940000155500.e	ENSGT00950000183149.C.a	ENSGT00940000157136.a	ENSGT00950000182941.a.a.a.b ##22
Characiphysae	ANCESTRAL SPECIES	59	ENSGT00390000004599.m	ENSGT00390000008624	ENSGT00940000158221	ENSGT00960000186719	ENSGT00940000154618	ENSGT00940000154482.b.b.b	ENSGT00940000159392	ENSGT00940000166774	ENSGT00390000004917	ENSGT00390000002211	ENSGT00940000157960.k.a	ENSGT00940000154928.c.a.a	ENSGT00940000155500.e	ENSGT00950000183149.C.a	ENSGT00940000157136.a	ENSGT00950000182941.a.a.a.b ##22	ENSGT00530000063946.b	ENSGT00940000157012.k	ENSGT00940000161252.g	ENSGT00950000183142.a.b.a.a	ENSGT00940000155634.q.a	ENSGT00940000156483.h.a	ENSGT00940000155727.o.a	ENSGT00390000006845	ENSGT00940000156775.e	ENSGT00940000164048
Characiphysae_b	ANCESTRAL SPECIES	44	ENSGT00940000155786.l	ENSGT00390000004599.m	ENSGT00390000008624	ENSGT00940000158221	ENSGT00940000154618	ENSGT00940000154482.b.b.b	ENSGT00940000159392	ENSGT00940000166774	ENSGT00390000004917	ENSGT00390000002211	ENSGT00940000157960.k.a	ENSGT00940000154928.c.a.a	ENSGT00940000155500.e	ENSGT00950000183149.C.a	ENSGT00940000157136.a	ENSGT00950000182941.a.a.a.b ##22	ENSGT00530000063946.b	ENSGT00940000157012.k	ENSGT00940000161252.g	ENSGT00950000183142.a.b.a.a	ENSGT00940000155634.q.a	ENSGT00940000156483.h.a	ENSGT00940000155727.o.a	ENSGT00390000006845	ENSGT00940000156775.e	ENSGT00940000164048	ENSGT00940000159813	ENSGT00930000151269	ENSGT00940000157697	ENSGT00940000157801	ENSGT00390000016567
Characoidei	ANCESTRAL SPECIES	64	ENSGT00940000155786.l	ENSGT00390000004599.m	ENSGT00390000008624	ENSGT00940000158221	ENSGT00940000154618	ENSGT00940000154482.b.b.b	ENSGT00940000159392	ENSGT00940000166774	ENSGT00390000004917	ENSGT00390000002211	ENSGT00940000157960.k.a	ENSGT00940000154928.c.a.a	ENSGT00940000155500.e	ENSGT00950000183149.C.a	ENSGT00940000157136.a	ENSGT00950000182941.a.a.a.b ##22	ENSGT00530000063946.b	ENSGT00940000157012.k	ENSGT00940000161252.g	ENSGT00950000183142.a.b.a.a	ENSGT00940000155634.q.a	ENSGT00940000156483.h.a	ENSGT00940000155727.o.a	ENSGT00390000006845	ENSGT00940000156775.e	ENSGT00940000164048	ENSGT00940000159813	ENSGT00930000151269	ENSGT00940000157697	ENSGT00940000157801	ENSGT00390000016567
Red-bellied piranha	MODERN SPECIES	244				nrxn3a (ENSPNAG00000026612)	ENSPNAG00000005759	dio2 (ENSPNAG00000006772)	STON2 (ENSPNAG00000003997)	foxn3 (ENSPNAG00000026029)	efcab11 (ENSPNAG00000025991)	TDP1 (ENSPNAG00000025950)	kcnk13a (ENSPNAG00000005301)	hmbox1a (ENSPNAG00000025836)	KIF13B (ENSPNAG00000025718)	ENSPNAG00000024803	znf395a (ENSPNAG00000024794)	ENSPNAG00000005996 ##22	SCAF8 (ENSPNAG00000024740)
Mexicana tetra	MODERN SPECIES	24	alkbh1 (ENSAMXG00000034307)	slirp (ENSAMXG00000018693)	adck1 (ENSAMXG00000038093)	nrxn3a (ENSAMXG00000018634)	dio2 (ENSAMXG00000018617)	STON2 (ENSAMXG00000018605)	foxn3 (ENSAMXG00000018596)	efcab11 (ENSAMXG00000018586)	TDP1 (ENSAMXG00000018570)	kcnk13a (ENSAMXG00000031465)	hmbox1a (ENSAMXG00000034456)	KIF13B (ENSAMXG00000018489)	ENSAMXG00000040009	znf395a (ENSAMXG00000036651)	ENSAMXG00000041763	ENSAMXG00000018401 ##22	ENSAMXG00000043743	TIAM2 (ENSAMXG00000018341)	CLDN20 (ENSAMXG00000025088)	tfb1m (ENSAMXG00000036128)	KLHL10 (ENSAMXG00000039166)	ARID1B (ENSAMXG00000018241)	ZDHHC14 (ENSAMXG00000018223)	LGALS8 (ENSAMXG00000018216)	gnmt (ENSAMXG00000042907)	kcnk5a (ENSAMXG00000042512)	ENSAMXG00000018190	KCNK16 (ENSAMXG00000037492)	ENSAMXG00000033775	ENSAMXG00000031544	DAAM2 (ENSAMXG00000018138)
Cyprinoidei	ANCESTRAL SPECIES	24	ENSGT00390000004599	ENSGT00390000008624	ENSGT00940000158221	ENSGT00960000186719	ENSGT00940000154618	ENSGT00940000154482.b.b.b	ENSGT00940000168142	ENSGT00940000166774	ENSGT00390000004917.c	ENSGT00390000002211	ENSGT00940000157960.k.a	ENSGT00940000154928.c.a.a	ENSGT00940000155500.e	ENSGT00950000183149.C.a	ENSGT00940000157136.a	ENSGT00950000182941.a.a.a.b ##22	ENSGT00940000180472	ENSGT00440000039367	ENSGT00940000156864.c	ENSGT00950000183031.A.a.b.e.a	ENSGT00940000155887.a.c	ENSGT01090000260070.D.b ##12	ENSGT00940000158228.b	ENSGT00390000016054.a ##37	ENSGT00940000155095.i.a	ENSGT00950000183028.a.a.b ##16	ENSGT00530000063596.A.j	ENSGT00940000154317.a.b.a	ENSGT00730000111419.b	ENSGT00940000155462.`b.a	ENSGT00940000156713.n
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	163	ENSGT00390000004599.k	ENSGT00390000008624.p	ENSGT00940000158221.a	ENSGT00960000186719	ENSGT00940000154618.lf.a	ENSGT00940000154482.b.b.b.e	ENSGT00940000168142.a	ENSGT00940000166774.c	ENSGT00390000004917.d	ENSGT00390000002211.b	ENSGT00940000157960.k.a.a	ENSGT00940000154928.c.a.a.b	ENSGT00940000155500.e.a	ENSGT00950000183149.C.a.b	ENSGT00940000157136.a.b	ENSGT00950000182941.a.a.a.b.a ##22	ENSGT00940000159056.h.b	ENSGT00440000039367.c	ENSGT00940000156864.c.d	ENSGT00950000183031.A.a.b.e.a.a.a	ENSGT00940000155887.a.c.a.a	ENSGT01090000260070.D.b.b ##12	ENSGT00940000158228.b.c	ENSGT00390000016054.a.l ##37	ENSGT00940000155095.i.a.a	ENSGT00950000183028.a.a.b.f ##16	ENSGT00950000183028.a.a.b.e.a ##16	ENSGT00530000063596.A.j	ENSGT00940000154317.a.b.a.a	ENSGT00730000111419.b.d	ENSGT00940000155462.`b.a.b
Cyprininae_a	ANCESTRAL SPECIES	24	ENSGT00390000004599.k	ENSGT00390000008624.p	ENSGT00940000158221.a	ENSGT00960000186719	ENSGT00940000154618.lf.a	ENSGT00940000154482.b.b.b.e	ENSGT00940000168142.a	ENSGT00940000166774.c	ENSGT00390000004917.d	ENSGT00390000002211.b	ENSGT00940000157960.k.a.a	ENSGT00940000154928.c.a.a.b	ENSGT00940000155500.e.a	ENSGT00950000183149.C.a.b	ENSGT00940000157136.a.b	ENSGT00950000182941.a.a.a.b.a ##22	ENSGT00940000159056.h.b	ENSGT00440000039367.c	ENSGT00940000156864.c.d	ENSGT00950000183031.A.a.b.e.a.a.a	ENSGT00940000155887.a.c.a.a	ENSGT01090000260070.D.b.b ##12	ENSGT00940000158228.b.c	ENSGT00390000016054.a.l ##37	ENSGT00940000155095.i.a.a	ENSGT00950000183028.a.a.b.f ##16	ENSGT00530000063596.A.j	ENSGT00940000154317.a.b.a.a	ENSGT00730000111419.b.d	ENSGT00940000155462.`b.a.b	ENSGT00940000156713.n.i
Common carp reference	MODERN SPECIES	30	alkbh1 (ENSCCRG00000047443)	slirp (ENSCCRG00000047440)	adck1 (ENSCCRG00000047434)	nrxn3a (ENSCCRG00000061826)	dio2 (ENSCCRG00000045908)	ston2 (ENSCCRG00000050825)	foxn3 (ENSCCRG00000050850)	EFCAB11 (ENSCCRG00000064009)	ENSCCRG00000044959	kcnk13a (ENSCCRG00000051500)	hmbox1a (ENSCCRG00000051501)	ENSCCRG00000051517	ENSCCRG00000062805	znf395a (ENSCCRG00000017072)	ENSCCRG00000079345	ENSCCRG00000056925 ##22	ENSCCRG00000040595	syne3 (ENSCCRG00000040613)	gabrr2a (ENSCCRG00000040640)	rragd (ENSCCRG00000050528)	ENSCCRG00000034803	ENSCCRG00000034808	gja10a (ENSCCRG00000034809) ##12	ENSCCRG00000034810	manea (ENSCCRG00000046859) ##37	fut9a (ENSCCRG00000060835)	fhl5 (ENSCCRG00000046780) ##16	ENSCCRG00000046870	col10a1a (ENSCCRG00000079131)	fyna (ENSCCRG00000000748)	marcksb (ENSCCRG00000073846)
Golden-line barbel	MODERN SPECIES	53	slirp (ENSSGRG00000037236)	adck1 (ENSSGRG00000037233)	ENSSGRG00000037231	nrxn3a (ENSSGRG00000036606)	dio2 (ENSSGRG00000036586)	dio2 (ENSSGRG00000036585)	ston2 (ENSSGRG00000036582)	foxn3 (ENSSGRG00000036577)	efcab11 (ENSSGRG00000036575)	TDP1 (ENSSGRG00000036105)	kcnk13a (ENSSGRG00000036089)	hmbox1a (ENSSGRG00000036087)	KIF13B (ENSSGRG00000035456)	ENSSGRG00000035438	znf395a (ENSSGRG00000035437)	ENSSGRG00000035435 ##22	ENSSGRG00000035430	syne3 (ENSSGRG00000035429)	gabrr2a (ENSSGRG00000035427)	RRAGD (ENSSGRG00000035403)	ENSSGRG00000035401	ENSSGRG00000035400	gja10a (ENSSGRG00000035399) ##12	ENSSGRG00000035397	manea (ENSSGRG00000035396) ##37	fut9a (ENSSGRG00000035394)	fhl5 (ENSSGRG00000035388) ##16	ENSSGRG00000035385	col10a1a (ENSSGRG00000035383)	marcksb (ENSSGRG00000035381)	fyna (ENSSGRG00000031585)
Goldfish	MODERN SPECIES	436									ENSCARG00000035378	TDP1 (ENSCARG00000035391)	kcnk13a (ENSCARG00000035442)	hmbox1a (ENSCARG00000035450)	KIF13B (ENSCARG00000035950)	ENSCARG00000049024	znf395a (ENSCARG00000049042)	ENSCARG00000049067 ##22	ENSCARG00000049082
Cyprininae	ANCESTRAL SPECIES	308	ENSGT00940000155786.l.a	ENSGT00390000004599.l	ENSGT00390000008624.o	ENSGT00940000158221.b	ENSGT00940000154618.lf.b.a.a	ENSGT00940000154482.b.b.b.f	ENSGT00940000168142.b	ENSGT00940000166774.d	ENSGT00390000004917.c	ENSGT00390000002211.a	ENSGT00940000157960.k.a.b	ENSGT00940000154928.c.a.a.a	ENSGT00940000155500.e.b	ENSGT00950000183149.C.a.a	ENSGT00940000157136.a.a	ENSGT00950000182941.a.a.a.b.b ##22	ENSGT00940000159056.h.a	ENSGT00440000039367.d	ENSGT00940000156864.c.c	ENSGT00950000183031.A.a.b.e.a.a.b	ENSGT00940000155887.a.c.a.b	ENSGT01090000260070.D.b.a ##12	ENSGT00940000158228.b.d	ENSGT00390000016054.a.k ##37	ENSGT00940000155095.i.a.b	ENSGT00950000183028.a.a.b.e.b ##16	ENSGT00940000154317.a.b.a.b	ENSGT00730000111419.b.c	ENSGT00940000155462.`b.a.a	ENSGT00940000156713.n.j	ENSGT01090000260070.A.pc.a ##12
Cyprininae_a	ANCESTRAL SPECIES	35	ENSGT00940000155786.l.a	ENSGT00390000004599.l	ENSGT00390000008624.o	ENSGT00940000158221.b	ENSGT00940000154618.lf.b.a.a	ENSGT00940000154482.b.b.b.f	ENSGT00940000168142.b	ENSGT00940000166774.d	ENSGT00390000004917.c	ENSGT00390000002211.a	ENSGT00940000157960.k.a.b	ENSGT00940000154928.c.a.a.a	ENSGT00940000155500.e.b	ENSGT00950000183149.C.a.a	ENSGT00940000157136.a.a	ENSGT00950000182941.a.a.a.b.b ##22	ENSGT00940000159056.h.a	ENSGT00440000039367.d	ENSGT00940000156864.c.c	ENSGT00950000183031.A.a.b.e.a.b	ENSGT00940000155887.a.c.a.b	ENSGT01090000260070.D.b.a ##12	ENSGT00940000158228.b.d	ENSGT00390000016054.a.k ##37	ENSGT00940000155095.i.a.b	ENSGT00950000183028.a.a.b.e.b ##16
Common carp reference	MODERN SPECIES	4	sptlc2a (ENSCCRG00000008814)	slirp (ENSCCRG00000054708)	alkbh1 (ENSCCRG00000036266)	ENSCCRG00000059562	adck1 (ENSCCRG00000073351)	nrxn3a (ENSCCRG00000035889)	dio2 (ENSCCRG00000062568)	ston2 (ENSCCRG00000027709)	foxn3 (ENSCCRG00000060978)	ENSCCRG00000050899	kcnk13a (ENSCCRG00000032522)	hmbox1a (ENSCCRG00000032520)	ENSCCRG00000032041	ENSCCRG00000017076	znf395a (ENSCCRG00000006628)	ENSCCRG00000006637 ##22	ENSCCRG00000035888	syne3 (ENSCCRG00000034549)	ENSCCRG00000054114	gabrr2a (ENSCCRG00000072526)	ENSCCRG00000040762	gja10a (ENSCCRG00000040767) ##12	ENSCCRG00000040773	manea (ENSCCRG00000046838) ##37	fut9a (ENSCCRG00000069903)	fhl5 (ENSCCRG00000055640) ##16	col10a1a (ENSCCRG00000082308)	marcksb (ENSCCRG00000081648)	fyna (ENSCCRG00000006855)	fabp7a (ENSCCRG00000007322)	ENSCCRG00000061875 ##12
Zebrafish	MODERN SPECIES	8	sptlc2a (ENSDARG00000018976)	alkbh1 (ENSDARG00000071164)	slirp (ENSDARG00000097753)	adck1 (ENSDARG00000062561)	nrxn3a (ENSDARG00000043746)	dio2 (ENSDARG00000094857)	ston2 (ENSDARG00000057452)	foxn3 (ENSDARG00000012833)	efcab11 (ENSDARG00000043740)	TDP1 (ENSDARG00000073866)	kcnk13a (ENSDARG00000008212)	hmbox1a (ENSDARG00000027082)	KIF13B (ENSDARG00000079731)	ENSDARG00000025024	znf395a (ENSDARG00000060113)	ENSDARG00000078241 ##22	ENSDARG00000097902	ENSDARG00000096867	syne3 (ENSDARG00000023237)	gabrr2a (ENSDARG00000052982)	rragd (ENSDARG00000006279)	ANKRD6 (ENSDARG00000057790)	gja10a (ENSDARG00000057792) ##12	manea (ENSDARG00000001898) ##37	fut9a (ENSDARG00000016460)	fhl5 (ENSDARG00000014805) ##16	ENSDARG00000075905	ENSDARG00000036569	col10a1a (ENSDARG00000054753)	marcksb (ENSDARG00000008803)	fyna (ENSDARG00000011370)
Clupeiformes	ANCESTRAL SPECIES	564																ENSGT00950000182941.a.a.a.b ##22	ENSGT00940000156509	ENSGT00940000156674	ENSGT00940000155913.c	ENSGT00390000011642.f	ENSGT00940000154481.b
Atlantic herring	MODERN SPECIES	5	XKR6 (ENSCHAG00000014777)	maco1b (ENSCHAG00000014785)	ldlrap1b (ENSCHAG00000014877)	ENSCHAG00000014909	FNDC5 (ENSCHAG00000014911)	olig4 (ENSCHAG00000014918)	bsdc1 (ENSCHAG00000014931)	ENSCHAG00000014945	marcksl1a (ENSCHAG00000014951)	ENSCHAG00000014961	ENSCHAG00000015008	ENSCHAG00000015081	ENSCHAG00000015105	ENSCHAG00000015138	ENSCHAG00000015166	ENSCHAG00000015208 ##22	ahi1 (ENSCHAG00000015240)	slc18b1 (ENSCHAG00000015554)	TULP4 (ENSCHAG00000015961)	ENSCHAG00000016009	ENSCHAG00000016116	metap1 (ENSCHAG00000019590)	btbd9 (ENSCHAG00000019713)	ENSCHAG00000019791	glo1 (ENSCHAG00000019819)	slc38a6 (ENSCHAG00000019841)	trmt5 (ENSCHAG00000020173)	mnat1 (ENSCHAG00000000350)	ppm1aa (ENSCHAG00000000622)	dhrs7 (ENSCHAG00000000718)	pcnx4 (ENSCHAG00000000811)
Euteleosteomorpha	ANCESTRAL SPECIES	19	ENSGT00940000161610	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000156886.D	ENSGT00940000154677.b.a	ENSGT00940000153739.a.b.t	ENSGT00520000055578.a.b	ENSGT00940000164272	ENSGT00940000153897.b.a.b	ENSGT00940000155459.x.b	ENSGT01030000234527.A.a.a.b.a	ENSGT00490000043329.a.b.g.a	ENSGT00940000155086.A	ENSGT00390000013931	ENSGT01030000234626.B	ENSGT00950000182941.a.a.a.b ##22	ENSGT00940000167949	ENSGT00940000156509	ENSGT00940000156674	ENSGT00940000155913.c	ENSGT00390000011642.f	ENSGT00940000154481.a.a	ENSGT00390000012924.a	ENSGT00390000013337	ENSGT00940000169194	ENSGT00730000111244.a.a	ENSGT01050000244948.c.b.a.a.b	ENSGT01050000244948.c.b.b	ENSGT00950000183204.b.b.b	ENSGT00940000163723.B	ENSGT00730000111123
Protacanthopterygii	ANCESTRAL SPECIES	22	ENSGT00940000153739.a.b.t	ENSGT00940000156484.b.e.a	ENSGT00940000166633	ENSGT00520000055578.a.b	ENSGT00940000153897.b.a.b	ENSGT00940000155459.x.b	ENSGT01030000234527.A.a.a.b.a	ENSGT00490000043329.a.b.g.a	ENSGT00940000155086.A	ENSGT00940000153804.A	ENSGT00940000155086.B	ENSGT00530000063558.B.k	ENSGT00390000011877	ENSGT00390000013931	ENSGT01030000234626.B.ub	ENSGT00950000182941.a.a.a.b ##22	ENSGT00940000167949	ENSGT00550000074878	ENSGT00940000157723.q.a	ENSGT00390000012341	ENSGT00940000156693	ENSGT00940000153609.b	ENSGT00390000013227.a.b	ENSGT00940000161401	ENSGT00390000000663	ENSGT00950000183168.B.b	ENSGT00530000063695.b	ENSGT00530000063929.a.b	ENSGT00940000159634	ENSGT00740000115564	ENSGT00550000074943
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	205	ENSGT00940000159456.d	ENSGT00730000111119.d	ENSGT00940000159896.d	ENSGT00940000161610.d	ENSGT00940000161107.v	ENSGT00940000156886.D.g	ENSGT00940000156484.b.e.a	ENSGT00940000154677.b.a.f	ENSGT00940000166633.b	ENSGT00520000055578.a.b.h	ENSGT00940000153897.b.a.b.g.b	ENSGT00940000155459.x.b.f	ENSGT01030000234527.A.a.a.b.a.h	ENSGT00490000043329.a.b.g.a.h	ENSGT00940000155086.A.d	ENSGT00950000182941.a.a.a.b.c ##22	ENSGT00940000167949	ENSGT00940000156674.b	ENSGT00940000155913.c.c
Huchen	MODERN SPECIES	2007											dnmt3ab (ENSHHUG00000017176)	dpysl5a (ENSHHUG00000017142)	mapre3a (ENSHHUG00000017127)	ENSHHUG00000017119	OTOF (ENSHHUG00000017061)	ENSHHUG00000017035 ##22	ENSHHUG00000017007	ENSHHUG00000016986	slc18b1 (ENSHHUG00000016966)	TULP4 (ENSHHUG00000016958)
Salmoninae_a	ANCESTRAL SPECIES	8	ENSGT00940000159456.d	ENSGT00730000111119.d	ENSGT00940000159896.d	ENSGT00940000161610.d	ENSGT00940000161107.v	ENSGT00940000156886.D.g	ENSGT00940000156484.b.e.a	ENSGT00940000154677.b.a.f	ENSGT00940000166633.b	ENSGT00520000055578.a.b.h	ENSGT00940000153897.b.a.b.g.b	ENSGT00940000155459.x.b.f	ENSGT01030000234527.A.a.a.b.a.h	ENSGT00490000043329.a.b.g.a.h	ENSGT00940000155086.A.d	ENSGT00950000182941.a.a.a.b.c ##22	ENSGT00940000167949	ENSGT00940000156674.b	ENSGT00940000155913.c.c	ENSGT00940000154481.a.a.b	ENSGT00390000013337.d	ENSGT00730000111244.a.a.c	ENSGT01050000244948.c.b.b.l	ENSGT00390000018635.c	ENSGT00940000156778.k.f.a	ENSGT00510000048701.b	ENSGT00950000182906.b.a.i.a.g.a	ENSGT01030000234595.A.b.a.a.c	ENSGT00950000183204.b.b.b.d	ENSGT00940000159826	ENSGT00940000157463.a.d
Salmo	ANCESTRAL SPECIES	11	ENSGT00940000159456.d	ENSGT00730000111119.d	ENSGT00940000159896.d	ENSGT00940000161610.d	ENSGT00940000161107.v	ENSGT00940000156886.D.g	ENSGT00940000156484.b.e.a	ENSGT00940000154677.b.a.f	ENSGT00940000166633.b	ENSGT00520000055578.a.b.h	ENSGT00940000153897.b.a.b.g.b	ENSGT00940000155459.x.b.f	ENSGT01030000234527.A.a.a.b.a.h	ENSGT00490000043329.a.b.g.a.h	ENSGT00940000155086.A.d	ENSGT00950000182941.a.a.a.b.c ##22	ENSGT00940000167949	ENSGT00940000156674.b	ENSGT00940000155913.c.c	ENSGT00940000154481.a.a.b	ENSGT00390000013337.d	ENSGT00730000111244.a.a.c	ENSGT01050000244948.c.b.b.l	ENSGT00390000018635.c.g	ENSGT00940000156778.k.f.a	ENSGT00510000048701.b	ENSGT00950000182906.b.a.i.a.g.a	ENSGT01030000234595.A.b.a.a.c	ENSGT00950000183204.b.b.b.d	ENSGT00940000159826	ENSGT00940000157463.a.d
Atlantic salmon	MODERN SPECIES	28	plekhh1 (ENSSSAG00000063941)	ENSSSAG00000064377	pax9 (ENSSSAG00000117660)	ENSSSAG00000064399	nkx2.1 (ENSSSAG00000064404)	ENSSSAG00000064453	ENSSSAG00000066302	ENSSSAG00000068367	ENSSSAG00000068422	dtnbb (ENSSSAG00000093448)	ENSSSAG00000093955	dnmt3ab (ENSSSAG00000068527)	dpyl5 (ENSSSAG00000069192)	mapre3a (ENSSSAG00000009963)	ENSSSAG00000069241	ENSSSAG00000069398 ##22	ENSSSAG00000069411	slc18b1 (ENSSSAG00000113603)	ENSSSAG00000069434	ENSSSAG00000070134	rmnd1 (ENSSSAG00000071238)	ENSSSAG00000071313	stx11a (ENSSSAG00000113883)	ddo (ENSSSAG00000071341)	ENSSSAG00000109618	ENSSSAG00000108807	ENSSSAG00000071394	ENSSSAG00000073553	ENSSSAG00000073665	ENSSSAG00000073667	ENSSSAG00000073670
Salmoninae	ANCESTRAL SPECIES	257											ENSGT00940000155459.x.b.e	ENSGT01030000234527.A.a.a.b.a.g	ENSGT00490000043329.a.b.g.a.g	ENSGT00940000155086.A.c	ENSGT00390000013931.n	ENSGT00950000182941.a.a.a.b.d ##22	ENSGT00940000156509	ENSGT00940000156674.a	ENSGT00940000155913.c.d	ENSGT00390000011642.f	ENSGT00940000154481.a.a.a	ENSGT00390000012924.a	ENSGT00390000013337.c	ENSGT00730000111244.a.a.d	ENSGT01050000244948.c.b.a.a.b	ENSGT01050000244948.c.b.b.k	ENSGT00940000159373	ENSGT00940000156778.k.e	ENSGT00950000182906.b.a.i.a.g.b	ENSGT00440000035378.d.l	ENSGT00940000162477.d
Salmoninae_a	ANCESTRAL SPECIES	64	ENSGT00730000111119.c	ENSGT00940000159896.c	ENSGT00940000161610.c	ENSGT00940000161107.u	ENSGT00510000047831	ENSGT00940000156886.D.h	ENSGT00940000154677.b.a.e	ENSGT00940000153739.a.b.t	ENSGT00520000055578.a.b.g	ENSGT00940000153897.b.a.b.g.a	ENSGT00940000155459.x.b.e	ENSGT01030000234527.A.a.a.b.a.g	ENSGT00490000043329.a.b.g.a.g	ENSGT00940000155086.A.c	ENSGT00390000013931.n	ENSGT00950000182941.a.a.a.b.d ##22	ENSGT00940000156509	ENSGT00940000156674.a	ENSGT00940000155913.c.d	ENSGT00390000011642.f	ENSGT00940000154481.a.a.a	ENSGT00390000012924.a	ENSGT00390000013337.c	ENSGT00730000111244.a.a.d	ENSGT01050000244948.c.b.a.a.b	ENSGT01050000244948.c.b.b.k	ENSGT00940000159373	ENSGT00940000156778.k.e	ENSGT00950000182906.b.a.i.a.g.b	ENSGT00440000035378.d.l	ENSGT00940000162477.d
Salmo	ANCESTRAL SPECIES	8	ENSGT00730000111119.c	ENSGT00940000159896.c	ENSGT00940000161610.c	ENSGT00940000161107.u	ENSGT00510000047831	ENSGT00940000156886.D.h	ENSGT00940000154677.b.a.e	ENSGT00940000166633.a	ENSGT00520000055578.a.b.g	ENSGT00940000153897.b.a.b.g.a	ENSGT00940000155459.x.b.e	ENSGT01030000234527.A.a.a.b.a.g	ENSGT00490000043329.a.b.g.a.g	ENSGT00940000155086.A.c	ENSGT00390000013931.n	ENSGT00950000182941.a.a.a.b.d ##22	ENSGT00940000156509	ENSGT00940000156674.a	ENSGT00940000155913.c.d	ENSGT00390000011642.f	ENSGT00940000154481.a.a.a	ENSGT00390000012924.a	ENSGT00390000013337.c	ENSGT00730000111244.a.a.d	ENSGT01050000244948.c.b.a.a.b	ENSGT01050000244948.c.b.b.k	ENSGT00940000159373	ENSGT00390000018635.c.h	ENSGT00940000156778.k.e	ENSGT00950000182906.b.a.i.a.g.b	ENSGT00440000035378.d.l
Atlantic salmon	MODERN SPECIES		zfp36l1a (ENSSSAG00000109874)	plekhh1 (ENSSSAG00000076963)	slc25a21 (ENSSSAG00000077374)	pax9 (ENSSSAG00000077394)	nkx2-8 (ENSSSAG00000077395)	nkx2.1 (ENSSSAG00000120893)	mbip (ENSSSAG00000077406)	ENSSSAG00000077473	ENSSSAG00000078035	dtnbb (ENSSSAG00000117898)	dnmt3ab (ENSSSAG00000042714)	dpysl5a (ENSSSAG00000043824)	mapre3a (ENSSSAG00000103255)	ENSSSAG00000044138	ENSSSAG00000045091	ENSSSAG00000045145 ##22	ahi1 (ENSSSAG00000045210)	slc18b1 (ENSSSAG00000045425)	ENSSSAG00000045797	myct1b (ENSSSAG00000045855)	ENSSSAG00000046366	ENSSSAG00000082734	rmnd1 (ENSSSAG00000050905)	ENSSSAG00000050920	ENSSSAG00000119559	stx11a (ENSSSAG00000050924)	zbtb24 (ENSSSAG00000050932)	ENSSSAG00000091107	ENSSSAG00000050948	STXBP5 (ENSSSAG00000051056)	ENSSSAG00000051996
Huchen	MODERN SPECIES	202											dnmt3ab (ENSHHUG00000034760)	dpysl5a (ENSHHUG00000034911)	mapre3a (ENSHHUG00000034932)	OTOF (ENSHHUG00000034941)	ENSHHUG00000035018	ENSHHUG00000035062 ##22	ahi1 (ENSHHUG00000035107)	slc18b1 (ENSHHUG00000035215)	TULP4 (ENSHHUG00000035231)	ENSHHUG00000035232	ENSHHUG00000035236	ENSHHUG00000035240	ENSHHUG00000035247	ENSHHUG00000035255	ENSHHUG00000035516	rmnd1 (ENSHHUG00000035530)	STX11 (ENSHHUG00000035552)	stx11a (ENSHHUG00000035559)	zbtb24 (ENSHHUG00000035562)	ENSHHUG00000035570	ENSHHUG00000035575
Northern pike	MODERN SPECIES	14	NKX2-8 (ENSELUG00000032728)	nkx2.1 (ENSELUG00000021339)	mbip (ENSELUG00000021316)	RPS6KA5 (ENSELUG00000021270)	ENSELUG00000021187	slc30a1b (ENSELUG00000021161)	hadhab (ENSELUG00000001109)	kif3cb (ENSELUG00000021061)	ASXL2 (ENSELUG00000021024)	dtnbb (ENSELUG00000020995)	dnmt3ab (ENSELUG00000020827)	dpysl5a (ENSELUG00000020654)	mapre3a (ENSELUG00000020621)	OTOF (ENSELUG00000020563)	ENSELUG00000020480	ENSELUG00000020462 ##22	ENSELUG00000020442	ahi1 (ENSELUG00000020418)	slc18b1 (ENSELUG00000020386)	TULP4 (ENSELUG00000020361)	ENSELUG00000020284	ENSELUG00000020147	CCDC170 (ENSELUG00000000825)	rmnd1 (ENSELUG00000019358)	ENSELUG00000019325	stx11a (ENSELUG00000019317)	zbtb24 (ENSELUG00000019305)	ddo (ENSELUG00000024792)	ENSELUG00000019278	STXBP5 (ENSELUG00000019262)	GRM1 (ENSELUG00000000820)
Acanthomorphata	ANCESTRAL SPECIES	19	ENSGT00730000111119	ENSGT00940000159896	ENSGT00940000161610	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000156886.D	ENSGT00940000154677.b.a	ENSGT00940000153739.a.b.t	ENSGT00520000055578.a.b	ENSGT00940000164272	ENSGT00940000153897.b.a.b	ENSGT00940000155459.x.b	ENSGT01030000234527.A.a.a.b.a	ENSGT00490000043329.a.b.g.a	ENSGT00940000155086.A	ENSGT00950000182941.a.a.a.b ##22	ENSGT00940000167949	ENSGT00940000156509	ENSGT00940000156674	ENSGT00940000155913.c	ENSGT00390000011642.f	ENSGT00940000154481.a.a	ENSGT00390000012924.a	ENSGT00390000013337	ENSGT00940000169194	ENSGT00730000111244.a.a	ENSGT01050000244948.c.b.a.a.b	ENSGT01050000244948.c.b.b	ENSGT00950000183204.b.b.b	ENSGT00940000163723.B	ENSGT00730000111123
Euacanthomorphacea	ANCESTRAL SPECIES	11	ENSGT00730000111119	ENSGT00940000159896	ENSGT00940000161610	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000156886.D	ENSGT00940000154677.b.a	ENSGT00940000153739.a.b.t	ENSGT00520000055578.a.b	ENSGT00940000164272	ENSGT00940000153897.b.a.b	ENSGT00940000155459.x.b	ENSGT01030000234527.A.a.a.b.a	ENSGT00490000043329.a.b.g.a	ENSGT00940000155086.A	ENSGT00950000182941.a.a.a.b ##22	ENSGT00940000167949	ENSGT00940000156509	ENSGT00940000156674	ENSGT00940000155913.c	ENSGT00390000011642.f	ENSGT00940000154481.a.a	ENSGT00390000012924.a	ENSGT00390000013337	ENSGT00940000169194	ENSGT00730000111244.a.a	ENSGT01050000244948.c.b.a.a.b	ENSGT01050000244948.c.b.b	ENSGT00950000183204.b.b.b	ENSGT00940000163723.B	ENSGT00730000111123
Percomorphaceae	ANCESTRAL SPECIES	13	ENSGT00730000111119	ENSGT00940000159896	ENSGT00940000161610	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000156886.D	ENSGT00940000154677.b.a	ENSGT00940000153739.a.b.t	ENSGT00520000055578.a.b	ENSGT00940000164272	ENSGT00940000153897.b.a.b	ENSGT00940000155459.x.b	ENSGT01030000234527.A.a.a.b.a	ENSGT00490000043329.a.b.g.a	ENSGT00940000155086.A	ENSGT00950000182941.a.a.a.b ##22	ENSGT00940000167949	ENSGT00940000156509	ENSGT00940000156674	ENSGT00940000155913.c	ENSGT00390000011642.f	ENSGT00940000154481.a.a.c.a	ENSGT00940000176900.a	ENSGT01030000234944.B	ENSGT00940000154481.a.a.c.b	ENSGT00390000012924.a	ENSGT00390000013337	ENSGT00940000169194	ENSGT00730000111244.a.a	ENSGT01050000244948.c.b.a.a.b	ENSGT01050000244948.c.b.b
Percomorphaceae_B	ANCESTRAL SPECIES	11	ENSGT00730000111119	ENSGT00940000159896	ENSGT00940000161610	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000156886.D	ENSGT00940000154677.b.a	ENSGT00940000153739.a.b.t	ENSGT00520000055578.a.b	ENSGT00940000164272	ENSGT00940000153897.b.a.b	ENSGT00940000155459.x.b	ENSGT01030000234527.A.a.a.b.a	ENSGT00490000043329.a.b.g.a	ENSGT00940000155086.A	ENSGT00950000182941.a.a.a.b ##22	ENSGT00940000167949	ENSGT00940000156509	ENSGT00940000156674	ENSGT00940000155913.c	ENSGT00390000011642.f	ENSGT00940000154481.a.a.c.b	ENSGT00390000012924.a	ENSGT00390000013337	ENSGT00940000169194	ENSGT01050000244948.c.b.a.a.b	ENSGT01050000244948.c.b.b	ENSGT00950000183204.b.b.b	ENSGT00940000163723.B	ENSGT00730000111123	ENSGT01030000234595.A.b.a.a
Ovalentaria	ANCESTRAL SPECIES	10	ENSGT00730000111119	ENSGT00940000159896	ENSGT00940000161610	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000156886.D	ENSGT00940000154677.b.a	ENSGT00940000153739.a.b.t	ENSGT00520000055578.a.b	ENSGT00940000164272	ENSGT00940000153897.b.a.b	ENSGT00940000155459.x.b	ENSGT01030000234527.A.a.a.b.a	ENSGT00490000043329.a.b.g.a	ENSGT00940000155086.A	ENSGT00950000182941.a.a.a.b ##22	ENSGT00940000167949	ENSGT00940000156509	ENSGT00940000156674	ENSGT00940000155913.c	ENSGT00390000011642.f	ENSGT00940000154481.a.a.c.a	ENSGT00940000176900.a	ENSGT01030000234944.B	ENSGT00940000154481.a.a.c.b	ENSGT00390000012924.a	ENSGT00390000013337	ENSGT00940000169194	ENSGT01050000244948.c.b.a.a.b	ENSGT01050000244948.c.b.b	ENSGT00950000183204.b.b.b
Atherinomorphae	ANCESTRAL SPECIES	11	ENSGT00730000111119	ENSGT00940000159896	ENSGT00940000161610	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000156886.D	ENSGT00940000154677.b.a	ENSGT00940000153739.a.b.t	ENSGT00520000055578.a.b	ENSGT00940000164272	ENSGT00940000153897.b.a.b	ENSGT00940000155459.x.b	ENSGT01030000234527.A.a.a.b.a	ENSGT00490000043329.a.b.g.a	ENSGT00940000155086.A	ENSGT00950000182941.a.a.a.b ##22	ENSGT00940000167949	ENSGT00940000156509	ENSGT00940000156674	ENSGT00940000155913.c	ENSGT00390000011642.f	ENSGT00940000154481.a.a.c.a	ENSGT00940000176900.a	ENSGT01030000234944.B	ENSGT00940000154481.a.a.c.b	ENSGT00390000012924.a	ENSGT00390000013337	ENSGT00940000169194	ENSGT01050000244948.c.b.a.a.b	ENSGT01050000244948.c.b.b	ENSGT00950000183204.b.b.b
Cyprinodontiformes	ANCESTRAL SPECIES	21	ENSGT00730000111119	ENSGT00940000159896	ENSGT00940000161610	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000156886.D	ENSGT00940000154677.b.a	ENSGT00940000153739.a.b.t	ENSGT00520000055578.a.b	ENSGT00940000164272	ENSGT00940000153897.b.a.b	ENSGT00940000155459.x.b	ENSGT01030000234527.A.a.a.b.a	ENSGT00490000043329.a.b.g.a	ENSGT00940000155086.A	ENSGT00950000182941.a.a.a.b ##22	ENSGT00940000167949	ENSGT00940000156509	ENSGT00940000156674	ENSGT00940000155913.c	ENSGT00390000011642.f	ENSGT00940000154481.a.a.c.a	ENSGT00940000176900.a	ENSGT01030000234944.B	ENSGT00940000154481.a.a.c.b	ENSGT00390000012924.a	ENSGT00390000013337	ENSGT00940000169194	ENSGT01050000244948.c.b.a.a.b	ENSGT01050000244948.c.b.b	ENSGT00950000183204.b.b.b
Cyprinodontoidei	ANCESTRAL SPECIES	8	ENSGT00730000111119	ENSGT00940000159896	ENSGT00940000161610	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000156886.D	ENSGT00940000154677.b.a	ENSGT00940000153739.a.b.t	ENSGT00520000055578.a.b	ENSGT00940000164272	ENSGT00940000153897.b.a.b	ENSGT00940000155459.x.b	ENSGT01030000234527.A.a.a.b.a	ENSGT00490000043329.a.b.g.a	ENSGT00940000155086.A	ENSGT00950000182941.a.a.a.b ##22	ENSGT00940000167949	ENSGT00940000156509	ENSGT00940000156674	ENSGT00940000155913.c	ENSGT00390000011642.f	ENSGT00940000154481.a.a.c.a	ENSGT00940000176900.a	ENSGT01030000234944.B	ENSGT00940000154481.a.a.c.b	ENSGT00390000012924.a	ENSGT00390000013337	ENSGT00940000169194	ENSGT01050000244948.c.b.a.a.b	ENSGT01050000244948.c.b.b	ENSGT00950000183204.b.b.b
Poeciliinae	ANCESTRAL SPECIES	8	ENSGT00940000159456	ENSGT00730000111119	ENSGT00940000159896	ENSGT00940000161610	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000156886.D	ENSGT00940000154677.b.a	ENSGT00940000153739.a.b.t	ENSGT00520000055578.a.b	ENSGT00940000153897.b.a.b	ENSGT00940000155459.x.b	ENSGT01030000234527.A.a.a.b.a	ENSGT00490000043329.a.b.g.a	ENSGT00940000155086.A	ENSGT00950000182941.a.a.a.b ##22	ENSGT00940000167949	ENSGT00940000156509	ENSGT00940000156674	ENSGT00940000155913.c	ENSGT00390000011642.f	ENSGT00940000154481.a.a.c.a	ENSGT00940000176900.a	ENSGT01030000234944.B	ENSGT00940000154481.a.a.c.b	ENSGT00390000012924.a	ENSGT00390000013337	ENSGT00940000169194	ENSGT01050000244948.c.b.a.a.b	ENSGT01050000244948.c.b.b	ENSGT00950000183204.b.b.b
Poecilia	ANCESTRAL SPECIES	10	ENSGT00940000159456	ENSGT00730000111119	ENSGT00940000159896	ENSGT00940000161610	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000156886.D	ENSGT00940000154677.b.a	ENSGT00940000153739.a.b.t	ENSGT00520000055578.a.b	ENSGT00940000153897.b.a.b	ENSGT00940000155459.x.b	ENSGT01030000234527.A.a.a.b.a	ENSGT00490000043329.a.b.g.a	ENSGT00940000155086.A	ENSGT00950000182941.a.a.a.b ##22	ENSGT00940000167949	ENSGT00940000156509	ENSGT00940000156674	ENSGT00940000155913.c	ENSGT00390000011642.f	ENSGT00940000154481.a.a.c.a	ENSGT00940000176900.a	ENSGT01030000234944.B	ENSGT00940000154481.a.a.c.b	ENSGT00390000012924.a	ENSGT00390000013337	ENSGT00940000169194	ENSGT01050000244948.c.b.a.a.b	ENSGT01050000244948.c.b.b	ENSGT00950000183204.b.b.b
NAME_6	ANCESTRAL SPECIES	3	ENSGT00730000111119	ENSGT00940000159896	ENSGT00940000161610	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000156886.D	ENSGT00940000154677.b.a	ENSGT00940000153739.a.b.t	ENSGT00520000055578.a.b	ENSGT00940000153897.b.a.b	ENSGT00940000155459.x.b.d	ENSGT00940000155459.x.b.c	ENSGT01030000234527.A.a.a.b.a	ENSGT00490000043329.a.b.g.a	ENSGT00940000155086.A	ENSGT00950000182941.a.a.a.b ##22	ENSGT00940000167949	ENSGT00940000156509	ENSGT00940000156674	ENSGT00940000155913.c	ENSGT00390000011642.f	ENSGT00940000154481.a.a.c.a	ENSGT00940000176900.a	ENSGT01030000234944.B	ENSGT00940000154481.a.a.c.b	ENSGT00390000012924.a	ENSGT00390000013337	ENSGT00940000169194	ENSGT01050000244948.c.b.a.a.b	ENSGT01050000244948.c.b.b	ENSGT00950000183204.b.b.b
Amazon molly	MODERN SPECIES	453	NKX2-8 (ENSPFOG00000017563)	nkx2.1 (ENSPFOG00000017570)	mbip (ENSPFOG00000017579)	RPS6KA5 (ENSPFOG00000017625)	hadhab (ENSPFOG00000017672)	kif3cb (ENSPFOG00000017737)	ENSPFOG00000017761	ENSPFOG00000017771	dtnbb (ENSPFOG00000023471)	dtnbb (ENSPFOG00000023529)	dnmt3ab (ENSPFOG00000017798)	dnmt3ab (ENSPFOG00000024640)	dpysl5a (ENSPFOG00000017924)	mapre3a (ENSPFOG00000022497)	OTOF (ENSPFOG00000017977)	ENSPFOG00000017988 ##22	ENSPFOG00000023093	ahi1 (ENSPFOG00000018010)	slc18b1 (ENSPFOG00000018065)	TULP4 (ENSPFOG00000018094)	ENSPFOG00000023334	ENSPFOG00000018166	ENSPFOG00000018414
Sailfin molly	MODERN SPECIES	1280												dnmt3ab (ENSPLAG00000020423)	dpysl5a (ENSPLAG00000020293)	mapre3a (ENSPLAG00000020238)	OTOF (ENSPLAG00000000447)	ENSPLAG00000020137 ##22	ENSPLAG00000020094	ahi1 (ENSPLAG00000020088)	slc18b1 (ENSPLAG00000020077)	TULP4 (ENSPLAG00000020046)	ENSPLAG00000019939	ENSPLAG00000019911	ENSPLAG00000019666
Guppy	MODERN SPECIES	453	plekhh1 (ENSPREG00000013512)	slc25a21 (ENSPREG00000013570)	pax9 (ENSPREG00000013601)	NKX2-8 (ENSPREG00000013623)	nkx2.1 (ENSPREG00000013637)	mbip (ENSPREG00000013664)	RPS6KA5 (ENSPREG00000013798)	hadhab (ENSPREG00000014227)	kif3cb (ENSPREG00000014256)	ENSPREG00000014267	dtnbb (ENSPREG00000014277)	dnmt3ab (ENSPREG00000014413)	dpysl5a (ENSPREG00000015127)	mapre3a (ENSPREG00000015151)	OTOF (ENSPREG00000015186)	ENSPREG00000015260 ##22	ENSPREG00000015287	ahi1 (ENSPREG00000015306)	slc18b1 (ENSPREG00000015335)	TULP4 (ENSPREG00000015376)	ENSPREG00000015419	ENSPREG00000015478	ENSPREG00000015687	ENSPREG00000015705	ENSPREG00000015739	ENSPREG00000015758	rmnd1 (ENSPREG00000015779)	ENSPREG00000015799	stx11a (ENSPREG00000015813)	fbxo30a (ENSPREG00000015829)	ENSPREG00000015842
Platyfish	MODERN SPECIES	10	pax9 (ENSXMAG00000015762)	NKX2-8 (ENSXMAG00000015760)	nkx2.1 (ENSXMAG00000029778)	mbip (ENSXMAG00000015742)	ENSXMAG00000024100	RPS6KA5 (ENSXMAG00000015712)	hadhab (ENSXMAG00000015694)	kif3cb (ENSXMAG00000015681)	ASXL2 (ENSXMAG00000015679)	dtnbb (ENSXMAG00000015641)	dnmt3ab (ENSXMAG00000021324)	ttc7b (ENSXMAG00000000604)	dpysl5a (ENSXMAG00000015602)	mapre3a (ENSXMAG00000015588)	OTOF (ENSXMAG00000015543)	ENSXMAG00000015524 ##22	ENSXMAG00000024124	ahi1 (ENSXMAG00000015504)	slc18b1 (ENSXMAG00000015487)	TULP4 (ENSXMAG00000015466)	ENSXMAG00000024565	ENSXMAG00000021462	ENSXMAG00000021294	ENSXMAG00000025037	ENSXMAG00000026171	ENSXMAG00000022706	rmnd1 (ENSXMAG00000015383)	ENSXMAG00000015381	STX11 (ENSXMAG00000028427)	stx11a (ENSXMAG00000020367)	fbxo30a (ENSXMAG00000015378)
NAME_4	ANCESTRAL SPECIES	29	ENSGT00730000111119	ENSGT00940000159896	ENSGT00940000161610	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000156886.D.d	ENSGT00940000154677.b.a	ENSGT00940000153739.a.b.t	ENSGT00520000055578.a.b	ENSGT00940000164272	ENSGT00940000153897.b.a.b	ENSGT00940000155459.x.b	ENSGT01030000234527.A.a.a.b.a	ENSGT00490000043329.a.b.g.a	ENSGT00940000155086.A	ENSGT00950000182941.a.a.a.b ##22	ENSGT00940000167949	ENSGT00940000156509	ENSGT00940000156674	ENSGT00940000155913.c	ENSGT00390000011642.f	ENSGT00940000154481.a.a.c.a	ENSGT00940000176900.a	ENSGT01030000234944.B	ENSGT00940000154481.a.b.fb	ENSGT00940000154481.a.a.c.b	ENSGT00390000013337	ENSGT00940000169194	ENSGT01050000244948.c.b.a.a.b	ENSGT01050000244948.c.b.b	ENSGT00950000183204.b.b.b
Mummichog	MODERN SPECIES	2289	slc25a21 (ENSFHEG00000001336)	pax9 (ENSFHEG00000001342)	NKX2-8 (ENSFHEG00000001349)	nkx2.1 (ENSFHEG00000001358)	mbip (ENSFHEG00000001365)	RPS6KA5 (ENSFHEG00000001369)	hadhab (ENSFHEG00000001377)	kif3cb (ENSFHEG00000001386)	ASXL2 (ENSFHEG00000001398)	ENSFHEG00000001402	dtnbb (ENSFHEG00000001412)	dnmt3ab (ENSFHEG00000001427)	dpysl5a (ENSFHEG00000001439)	mapre3a (ENSFHEG00000001466)	OTOF (ENSFHEG00000001485)	ENSFHEG00000001496 ##22	ENSFHEG00000001505	ahi1 (ENSFHEG00000001512)	slc18b1 (ENSFHEG00000001532)	TULP4 (ENSFHEG00000001547)	ENSFHEG00000001552	ENSFHEG00000001583	ENSFHEG00000001606	ENSFHEG00000001640	rmnd1 (ENSFHEG00000001651)	ENSFHEG00000001657	STX11 (ENSFHEG00000001664)	stx11a (ENSFHEG00000001668)	fbxo30a (ENSFHEG00000001673)	ENSFHEG00000001677	SHPRH (ENSFHEG00000001704)
Aplocheiloidei	ANCESTRAL SPECIES	29	ENSGT00940000159456	ENSGT00730000111119	ENSGT00940000159896	ENSGT00940000161610	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000156886.D	ENSGT00940000154677.b.a	ENSGT00940000153739.a.b.t	ENSGT00520000055578.a.b	ENSGT00940000153897.b.a.b	ENSGT00940000155459.x.b	ENSGT01030000234527.A.a.a.b.a	ENSGT00490000043329.a.b.g.a	ENSGT00940000155086.A	ENSGT00950000182941.a.a.a.b ##22	ENSGT00940000156509	ENSGT00940000156674	ENSGT00940000155913.c	ENSGT00390000011642.f	ENSGT00940000154481.a.a.c.b	ENSGT00390000013337	ENSGT00940000169194	ENSGT01050000244948.c.b.a.a.b	ENSGT01050000244948.c.b.b	ENSGT00950000183204.b.b.b	ENSGT00940000163723.B	ENSGT00730000111123	ENSGT01030000234595.A.b.a.a	ENSGT00950000182906.b.a.i.a	ENSGT00940000156778.k
Turquoise killifish	MODERN SPECIES	1625	SAV1 (ENSNFUG00015015132)	ENSNFUG00015015149	ABHD12B (ENSNFUG00015015190)	pygl (ENSNFUG00015015397)	TRIM9 (ENSNFUG00015016904)	ENSNFUG00015016933	TMX1 (ENSNFUG00015016940)	frmd6 (ENSNFUG00015016958)	GNG2 (ENSNFUG00015017006)	DUSP23 (ENSNFUG00015017017)	ENSNFUG00015017027	txlnbb (ENSNFUG00015017057)	HIVEP2 (ENSNFUG00015017090)	fuca2 (ENSNFUG00015017128)	TATDN3 (ENSNFUG00015017133)	MAP7 (ENSNFUG00015017149) ##22	AHI1 (ENSNFUG00015017160)	slc18b1 (ENSNFUG00015017191)	CR407704.1 (ENSNFUG00015017211)	ENSNFUG00015017255	ENSNFUG00015017503	RMND1 (ENSNFUG00015019360)	ENSNFUG00015019427	STX11 (ENSNFUG00015019430)	STX11A (ENSNFUG00015019432)	fbxo30a (ENSNFUG00015019434)	SHPRH (ENSNFUG00015019440)	GRM1 (ENSNFUG00015019530)	STXBP5B (ENSNFUG00015019586)	SASH1 (ENSNFUG00015020670)	ddo (ENSNFUG00015020676)
Ovalentaria_B	ANCESTRAL SPECIES	24	ENSGT00940000159456	ENSGT00730000111119	ENSGT00940000159896	ENSGT00940000161610	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000156886.D	ENSGT00940000154677.b.a	ENSGT00940000153739.a.b.t	ENSGT00520000055578.a.b	ENSGT00940000153897.b.a.b	ENSGT00940000155459.x.b	ENSGT01030000234527.A.a.a.b.a	ENSGT00490000043329.a.b.g.a	ENSGT00940000155086.A	ENSGT00950000182941.a.a.a.b ##22	ENSGT00940000167949	ENSGT00940000156509	ENSGT00940000156674	ENSGT00940000155913.c	ENSGT00390000011642.f	ENSGT00940000154481.a.a.c.a	ENSGT00940000176900.a	ENSGT01030000234944.B	ENSGT00940000154481.a.a.c.b	ENSGT00390000012924.a	ENSGT00390000013337	ENSGT00940000169194	ENSGT01050000244948.c.b.a.a.b	ENSGT01050000244948.c.b.b	ENSGT00950000183204.b.b.b
Pomacentridae	ANCESTRAL SPECIES	22	ENSGT00940000159456	ENSGT00730000111119	ENSGT00940000159896	ENSGT00940000161610	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000156886.D	ENSGT00940000154677.b.a	ENSGT00940000153739.a.b.t	ENSGT00520000055578.a.b	ENSGT00940000153897.b.a.b	ENSGT00940000155459.x.b	ENSGT01030000234527.A.a.a.b.a	ENSGT00490000043329.a.b.g.a	ENSGT00940000155086.A	ENSGT00950000182941.a.a.a.b ##22	ENSGT00940000167949	ENSGT00940000156509	ENSGT00940000156674	ENSGT00940000155913.c	ENSGT00390000011642.f	ENSGT00940000154481.a.a.c.a	ENSGT00940000176900.a	ENSGT01030000234944.B	ENSGT00940000154481.a.a.c.b	ENSGT00390000012924.a	ENSGT00390000013337	ENSGT00940000169194	ENSGT01050000244948.c.b.a.a.b	ENSGT01050000244948.c.b.b	ENSGT00950000183204.b.b.b
Pomacentridae_A	ANCESTRAL SPECIES	57	ENSGT00940000159456	ENSGT00730000111119	ENSGT00940000159896	ENSGT00940000161610	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000156886.D	ENSGT00940000154677.b.a	ENSGT00940000153739.a.b.t	ENSGT00520000055578.a.b	ENSGT00940000153897.b.a.b	ENSGT00940000155459.x.b	ENSGT01030000234527.A.a.a.b.a	ENSGT00490000043329.a.b.g.a	ENSGT00940000155086.A	ENSGT00950000182941.a.a.a.b ##22	ENSGT00940000167949	ENSGT00940000156509	ENSGT00940000156674	ENSGT00940000155913.c	ENSGT00390000011642.f	ENSGT00940000154481.a.a.c.a	ENSGT00940000176900.a	ENSGT01030000234944.B	ENSGT00940000154481.a.a.c.b	ENSGT00390000012924.a	ENSGT00390000013337	ENSGT00940000169194	ENSGT01050000244948.c.b.a.a.b	ENSGT01050000244948.c.b.b	ENSGT00950000183204.b.b.b
Amphiprion	ANCESTRAL SPECIES	83	ENSGT00940000159456	ENSGT00730000111119	ENSGT00940000159896	ENSGT00940000161610	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000156886.D	ENSGT00940000154677.b.a	ENSGT00940000153739.a.b.t	ENSGT00520000055578.a.b	ENSGT00940000153897.b.a.b	ENSGT00940000155459.x.b	ENSGT01030000234527.A.a.a.b.a	ENSGT00490000043329.a.b.g.a	ENSGT00940000155086.A	ENSGT00950000182941.a.a.a.b ##22	ENSGT00940000167949	ENSGT00940000156509	ENSGT00940000156674	ENSGT00940000155913.c	ENSGT00390000011642.f.d	ENSGT01090000260070.D.b ##12	ENSGT00940000155887.a	ENSGT00950000183031.A.a.b	ENSGT00940000156864.c
Orange clownfish	MODERN SPECIES	9	pax9 (ENSAPEG00000010061)	NKX2-8 (ENSAPEG00000010047)	nkx2.1 (ENSAPEG00000010034)	mbip (ENSAPEG00000010022)	RPS6KA5 (ENSAPEG00000010002)	ENSAPEG00000009987	ENSAPEG00000009973	hadhab (ENSAPEG00000009876)	kif3cb (ENSAPEG00000009799)	ASXL2 (ENSAPEG00000009777)	dtnbb (ENSAPEG00000009720)	dnmt3ab (ENSAPEG00000009584)	dpysl5a (ENSAPEG00000009506)	mapre3a (ENSAPEG00000009470)	ENSAPEG00000009441	ENSAPEG00000009425 ##22	ahi1 (ENSAPEG00000009375)	slc18b1 (ENSAPEG00000009354)	TULP4 (ENSAPEG00000009289)	ENSAPEG00000009258	ENSAPEG00000009249	gja10a (ENSAPEG00000009234) ##12	ENSAPEG00000009206	ENSAPEG00000009179	rragd (ENSAPEG00000009165)	ENSAPEG00000008970	ENSAPEG00000008945	gabrr2a (ENSAPEG00000008909)	ENSAPEG00000008899	ENSAPEG00000008859	ENSAPEG00000008846
Clown anemonefish	MODERN SPECIES	668															OTOF (ENSAOCG00000013459)	ENSAOCG00000013203 ##22	ENSAOCG00000013174	ahi1 (ENSAOCG00000013157)	slc18b1 (ENSAOCG00000013136)	TULP4 (ENSAOCG00000013118)	ENSAOCG00000013096	gja10a (ENSAOCG00000013084) ##12	rragd (ENSAOCG00000013072)	gabrr2a (ENSAOCG00000013041)
Spiny chromis	MODERN SPECIES	571										ENSAPOG00000009950	ENSAPOG00000009969	ENSAPOG00000010038	fitm1l (ENSAPOG00000010045)	trnau1apb (ENSAPOG00000010086)	OTOF (ENSAPOG00000010413)	ENSAPOG00000010479 ##22	ahi1 (ENSAPOG00000010501)	slc18b1 (ENSAPOG00000010524)	TULP4 (ENSAPOG00000010588)	ENSAPOG00000010614	ENSAPOG00000011151	rmnd1 (ENSAPOG00000011181)	ENSAPOG00000011189	STX11 (ENSAPOG00000011230)	stx11a (ENSAPOG00000011315)	fbxo30a (ENSAPOG00000011346)	SHPRH (ENSAPOG00000011458)	GRM1 (ENSAPOG00000011528)	RAB32 (ENSAPOG00000011562)
Bicolor damselfish	MODERN SPECIES	738												dnmt3ab (ENSSPAG00000014883)	dpysl5a (ENSSPAG00000014948)	mapre3a (ENSSPAG00000014976)	OTOF (ENSSPAG00000015005)	ENSSPAG00000015086 ##22	ENSSPAG00000015133	ahi1 (ENSSPAG00000015157)	slc18b1 (ENSSPAG00000015198)	TULP4 (ENSSPAG00000015235)	ENSSPAG00000015282	ENSSPAG00000015332	ENSSPAG00000015631	rmnd1 (ENSSPAG00000015686)	ENSSPAG00000015697	stx11a (ENSSPAG00000015702)	fbxo30a (ENSSPAG00000015738)	ENSSPAG00000015751	SHPRH (ENSSPAG00000015794)	GRM1 (ENSSPAG00000015933)	ENSSPAG00000016009
Cichlidae	ANCESTRAL SPECIES	23	ENSGT00940000159456	ENSGT00730000111119	ENSGT00940000159896	ENSGT00940000161610	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000156886.D	ENSGT00940000154677.b.a	ENSGT00940000153739.a.b.t	ENSGT00520000055578.a.b	ENSGT00940000153897.b.a.b	ENSGT00940000155459.x.b	ENSGT01030000234527.A.a.a.b.a	ENSGT00490000043329.a.b.g.a	ENSGT00940000155086.A	ENSGT00950000182941.a.a.a.b ##22	ENSGT00940000167949	ENSGT00940000156509	ENSGT00940000156674	ENSGT00940000155913.c	ENSGT00390000011642.f	ENSGT00940000154481.a.a.c.b	ENSGT00390000012924.a	ENSGT00390000013337	ENSGT00940000169194	ENSGT01050000244948.c.b.a.a.b	ENSGT01050000244948.c.b.b	ENSGT00950000183204.b.b.b	ENSGT00940000163723.B	ENSGT00730000111123	ENSGT01030000234595.A.b.a.a
Pseudocrenilabrinae	ANCESTRAL SPECIES	8	ENSGT00940000157005	ENSGT00940000154659.b	ENSGT00940000156699.j	ENSGT01070000253816.b.d	ENSGT00390000016814.b	ENSGT00940000157741	ENSGT00950000182972.a.a.a.b	ENSGT00940000153249.b.d.a	ENSGT00940000155667.b.b	ENSGT00940000155714	ENSGT00950000183097.a.b	ENSGT00940000154674.q.a	ENSGT00910000144305	ENSGT00950000182988.a.a.a	ENSGT00940000155086.A	ENSGT00950000182941.a.a.a.b ##22	ENSGT00940000167949	ENSGT00940000156509	ENSGT00940000156674.f	ENSGT00940000156674.e	ENSGT00940000155913.c	ENSGT00390000011642.f	ENSGT00940000154481.a.a.c.b	ENSGT00390000012924.a	ENSGT00390000013337	ENSGT00940000169194	ENSGT01050000244948.c.b.a.a.b	ENSGT01050000244948.c.b.b	ENSGT00950000183204.b.b.b	ENSGT00940000163723.B	ENSGT00730000111123
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	6	ENSGT00940000157005	ENSGT00940000154659.b	ENSGT00940000156699.j	ENSGT01070000253816.b.d	ENSGT00390000016814.b	ENSGT00940000157741	ENSGT00950000182972.a.a.a.b	ENSGT00940000153249.b.d.a	ENSGT00940000155667.b.b	ENSGT00940000155714	ENSGT00950000183097.a.b	ENSGT00940000154674.q.a	ENSGT00910000144305	ENSGT00950000182988.a.a.a	ENSGT00940000155086.A	ENSGT00950000182941.a.a.a.b ##22	ENSGT00940000167949	ENSGT00940000156509	ENSGT00940000156674.f	ENSGT00940000156674.e	ENSGT00940000155913.c	ENSGT00390000011642.f	ENSGT00940000154481.a.a.c.b	ENSGT00390000012924.a	ENSGT00390000013337	ENSGT00940000169194	ENSGT01050000244948.c.b.a.a.b	ENSGT01050000244948.c.b.b	ENSGT00950000183204.b.b.b	ENSGT00940000163723.B	ENSGT00730000111123
Haplochromini	ANCESTRAL SPECIES	7	ENSGT00940000157005	ENSGT00940000154659.b	ENSGT00940000156699.j	ENSGT01070000253816.b.d	ENSGT00390000016814.b	ENSGT00940000157741	ENSGT00950000182972.a.a.a.b	ENSGT00940000153249.b.d.a	ENSGT00940000155667.b.b	ENSGT00940000155714	ENSGT00950000183097.a.b	ENSGT00940000154674.q.a	ENSGT00910000144305	ENSGT00950000182988.a.a.a	ENSGT00940000155086.A	ENSGT00950000182941.a.a.a.b ##22	ENSGT00940000167949	ENSGT00940000156509	ENSGT00940000156674.f	ENSGT00940000156674.e	ENSGT00940000155913.c	ENSGT00390000011642.f	ENSGT00940000154481.a.a.c.b	ENSGT00390000012924.a	ENSGT00390000013337	ENSGT00940000169194	ENSGT01050000244948.c.b.a.a.b	ENSGT01050000244948.c.b.b	ENSGT00950000183204.b.b.b	ENSGT00940000163723.B	ENSGT00730000111123
Haplochromini_A	ANCESTRAL SPECIES	7	ENSGT00940000157005	ENSGT00940000154659.b	ENSGT00940000156699.j	ENSGT01070000253816.b.d	ENSGT00390000016814.b	ENSGT00940000157741	ENSGT00950000182972.a.a.a.b	ENSGT00940000153249.b.d.a	ENSGT00940000155667.b.b	ENSGT00940000155714	ENSGT00950000183097.a.b	ENSGT00940000154674.q.a	ENSGT00910000144305	ENSGT00950000182988.a.a.a	ENSGT00940000155086.A	ENSGT00950000182941.a.a.a.b ##22	ENSGT00940000167949	ENSGT00940000156509	ENSGT00940000156674.f	ENSGT00940000156674.e	ENSGT00940000155913.c	ENSGT00390000011642.f	ENSGT00940000154481.a.a.c.b	ENSGT00390000012924.a	ENSGT00390000013337	ENSGT00940000169194	ENSGT01050000244948.c.b.a.a.b	ENSGT01050000244948.c.b.b	ENSGT00950000183204.b.b.b	ENSGT00940000163723.B	ENSGT00730000111123
Haplochromini_B	ANCESTRAL SPECIES	13	ENSGT00940000157005	ENSGT00940000154659.b	ENSGT00940000156699.j	ENSGT01070000253816.b.d	ENSGT00390000016814.b	ENSGT00940000157741	ENSGT00950000182972.a.a.a.b	ENSGT00940000153249.b.d.a	ENSGT00940000155667.b.b	ENSGT00940000155714	ENSGT00950000183097.a.b	ENSGT00940000154674.q.a	ENSGT00910000144305	ENSGT00950000182988.a.a.a	ENSGT00940000155086.A	ENSGT00950000182941.a.a.a.b ##22	ENSGT00940000167949	ENSGT00940000156509	ENSGT00940000156674.f	ENSGT00950000183016.D.b.c	ENSGT00940000156674.e	ENSGT00940000155913.c	ENSGT00390000011642.f	ENSGT00940000154481.a.a.c.b	ENSGT00390000012924.a	ENSGT00390000013337	ENSGT00940000169194	ENSGT01050000244948.c.b.a.a.b	ENSGT01050000244948.c.b.b	ENSGT00950000183204.b.b.b	ENSGT00940000163723.B
Eastern happy	MODERN SPECIES	10	fndc3ba (ENSACLG00000006238)	PPP2R3A (ENSACLG00000006170)	nceh1a (ENSACLG00000006160)	tnfsf10 (ENSACLG00000006153)	msl2b (ENSACLG00000006145)	pccb (ENSACLG00000006092)	STAG1 (ENSACLG00000005739)	ENSACLG00000005731	ENSACLG00000005717	ATR (ENSACLG00000005624)	pls1 (ENSACLG00000005562)	gyg1a (ENSACLG00000005555)	HLTF (ENSACLG00000005486)	pak2a (ENSACLG00000005452)	OTOF (ENSACLG00000005391)	ENSACLG00000005355 ##22	ENSACLG00000005339	ahi1 (ENSACLG00000005307)	slc18b1 (ENSACLG00000005253)	ENSACLG00000005243	slc18b1 (ENSACLG00000005190)	TULP4 (ENSACLG00000005166)	ENSACLG00000004732	ENSACLG00000004503	ENSACLG00000004151	ENSACLG00000004125	rmnd1 (ENSACLG00000004111)	ENSACLG00000004104	stx11a (ENSACLG00000004097)	STX11 (ENSACLG00000004072)	fbxo30a (ENSACLG00000004066)
Zebra mbuna	MODERN SPECIES	301										ATR (ENSMZEG00005003131)	pls1 (ENSMZEG00005003068)	gyg1a (ENSMZEG00005003039)	HLTF (ENSMZEG00005003008)	pak2a (ENSMZEG00005002967)	OTOF (ENSMZEG00005002855)	ENSMZEG00005002836 ##22	ENSMZEG00005002824	ahi1 (ENSMZEG00005002805)	slc18b1 (ENSMZEG00005002800)
Burton s mouthbrooder	MODERN SPECIES	345	fndc3ba (ENSHBUG00000014984)	PPP2R3A (ENSHBUG00000014845)	nceh1a (ENSHBUG00000014795)	tnfsf10 (ENSHBUG00000001166)	MSL2 (ENSHBUG00000001149)	pccb (ENSHBUG00000000432)	STAG1 (ENSHBUG00000014711)	ENSHBUG00000014550	ENSHBUG00000014542	ATR (ENSHBUG00000014512)	pls1 (ENSHBUG00000014404)	gyg1a (ENSHBUG00000014361)	HLTF (ENSHBUG00000014165)	pak2a (ENSHBUG00000014148)	OTOF (ENSHBUG00000014042)	ENSHBUG00000013938 ##22	ENSHBUG00000013925	ahi1 (ENSHBUG00000013903)	slc18b1 (ENSHBUG00000013865)	slc18b1 (ENSHBUG00000013822)	TULP4 (ENSHBUG00000013811)	ENSHBUG00000013763	ENSHBUG00000013735	ENSHBUG00000013340	rmnd1 (ENSHBUG00000013305)	ENSHBUG00000013285	STX11 (ENSHBUG00000013278)	fbxo30a (ENSHBUG00000001110)	ENSHBUG00000013220	SHPRH (ENSHBUG00000013180)	GRM1 (ENSHBUG00000013042)
Midas cichlid	MODERN SPECIES	362	plekhh1 (ENSACIG00000016325)	slc25a21 (ENSACIG00000016389)	pax9 (ENSACIG00000016451)	NKX2-8 (ENSACIG00000016461)	nkx2.1 (ENSACIG00000016474)	mbip (ENSACIG00000016547)	RPS6KA5 (ENSACIG00000016608)	hadhab (ENSACIG00000016806)	kif3cb (ENSACIG00000016854)	ENSACIG00000016887	dtnbb (ENSACIG00000016910)	dnmt3ab (ENSACIG00000017005)	dpysl5a (ENSACIG00000017769)	mapre3a (ENSACIG00000017796)	OTOF (ENSACIG00000017805)	ENSACIG00000017829 ##22	ENSACIG00000017846	ahi1 (ENSACIG00000017883)	slc18b1 (ENSACIG00000017919)
Percomorphaceae_C	ANCESTRAL SPECIES	12	ENSGT00940000159456	ENSGT00730000111119	ENSGT00940000159896	ENSGT00940000161610	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000156886.D	ENSGT00940000154677.b.a	ENSGT00940000153739.a.b.t	ENSGT00520000055578.a.b	ENSGT00940000153897.b.a.b	ENSGT00940000155459.x.b	ENSGT01030000234527.A.a.a.b.a	ENSGT00490000043329.a.b.g.a	ENSGT00940000155086.A	ENSGT00950000182941.a.a.a.b ##22	ENSGT00940000167949	ENSGT00940000156509	ENSGT00940000156674	ENSGT00940000155913.c	ENSGT00390000011642.f	ENSGT00940000154481.a.a.d	ENSGT00390000012924.a	ENSGT00390000013337	ENSGT00940000169194	ENSGT01050000244948.c.b.a.a.b	ENSGT01050000244948.c.b.b	ENSGT00950000183204.b.b.b	ENSGT00940000163723.B	ENSGT00730000111123	ENSGT01030000234595.A.b.a.a
Eupercaria	ANCESTRAL SPECIES	9	ENSGT00940000159456	ENSGT00730000111119	ENSGT00940000159896	ENSGT00940000161610	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000156886.D	ENSGT00940000154677.b.a	ENSGT00940000153739.a.b.t	ENSGT00520000055578.a.b	ENSGT00940000153897.b.a.b	ENSGT00940000155459.x.b	ENSGT01030000234527.A.a.a.b.a	ENSGT00490000043329.a.b.g.a	ENSGT00940000155086.A	ENSGT00950000182941.a.a.a.b ##22	ENSGT00940000167949	ENSGT00940000156509	ENSGT00940000156674	ENSGT00940000155913.c	ENSGT00390000011642.f	ENSGT00940000154481.a.a.d	ENSGT00390000012924.a	ENSGT00390000013337	ENSGT00940000169194	ENSGT01050000244948.c.b.a.a.b	ENSGT01050000244948.c.b.b	ENSGT00950000183204.b.b.b	ENSGT00940000163723.B	ENSGT00730000111123	ENSGT01030000234595.A.b.a.a
Tetraodontidae	ANCESTRAL SPECIES	3	ENSGT00940000159456	ENSGT00730000111119	ENSGT00940000159896	ENSGT00940000161610	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000156886.D	ENSGT00940000154677.b.a	ENSGT00940000153739.a.b.t	ENSGT00520000055578.a.b	ENSGT00940000153897.b.a.b	ENSGT00940000155459.x.b	ENSGT01030000234527.A.a.a.b.a	ENSGT00490000043329.a.b.g.a	ENSGT00940000155086.A	ENSGT00950000182941.a.a.a.b ##22	ENSGT00940000177671	ENSGT00940000156509.m	ENSGT00940000156674	ENSGT00940000155913.c	ENSGT00390000011642.f	ENSGT00940000154481.a.a.d	ENSGT00390000013337	ENSGT00940000169194	ENSGT01050000244948.c.b.a.a.b	ENSGT01050000244948.c.b.b	ENSGT00950000183204.b.b.b	ENSGT00940000163723.B	ENSGT00730000111123	ENSGT01030000234595.A.b.a.a	ENSGT00940000162477.d
Fugu	MODERN SPECIES	11	plekhh1 (ENSTRUG00000012147)	slc25a21 (ENSTRUG00000023029)	pax9 (ENSTRUG00000011965)	ENSTRUG00000030643	nkx2.9 (ENSTRUG00000011937)	nkx2.1 (ENSTRUG00000011900)	mbip (ENSTRUG00000011871)	RPS6KA5 (ENSTRUG00000011435)	hadhab (ENSTRUG00000010991)	ENSTRUG00000023146	ENSTRUG00000023287	dtnbb (ENSTRUG00000010348)	dnmt3ab (ENSTRUG00000009738)	dpysl5a (ENSTRUG00000009449)	mapre3a (ENSTRUG00000009296)	ENSTRUG00000029071 ##22	ENSTRUG00000025849	ahi1 (ENSTRUG00000008309)	slc18b1 (ENSTRUG00000001854)	TULP4 (ENSTRUG00000007983)	ENSTRUG00000025910	rmnd1 (ENSTRUG00000006625)	ENSTRUG00000029368	STX11 (ENSTRUG00000006593)	fbxo30a (ENSTRUG00000001577)	SHPRH (ENSTRUG00000001674)	RAB32 (ENSTRUG00000024158)	GRM1 (ENSTRUG00000002341)	STXBP5 (ENSTRUG00000003152)	SASH1 (ENSTRUG00000024046)	ddo (ENSTRUG00000004608)
Tetraodon	MODERN SPECIES	1	ENSTNIG00000019279	UBE4A (ENSTNIG00000019280)	kmt2a (ENSTNIG00000019281)	plekhh1 (ENSTNIG00000019282)	slc25a21 (ENSTNIG00000019283)	pax9 (ENSTNIG00000019284)	RPS6KA5 (ENSTNIG00000019285)	hadhab (ENSTNIG00000019286)	kif3cb (ENSTNIG00000019287)	ENSTNIG00000019288	dtnbb (ENSTNIG00000019289)	dnmt3ab (ENSTNIG00000019290)	dpysl5a (ENSTNIG00000019291)	mapre3a (ENSTNIG00000019292)	OTOF (ENSTNIG00000019293)	ENSTNIG00000019294 ##22	ahi1 (ENSTNIG00000019295)	slc18b1 (ENSTNIG00000019296)	TULP4 (ENSTNIG00000019297)	ENSTNIG00000019298	ENSTNIG00000019299	ENSTNIG00000019300	rmnd1 (ENSTNIG00000019301)	STX11 (ENSTNIG00000019302)	stx11a (ENSTNIG00000019303)	fbxo30a (ENSTNIG00000019304)	ENSTNIG00000019305	SHPRH (ENSTNIG00000019306)	GRM1 (ENSTNIG00000019307)	RAB32 (ENSTNIG00000019308)	STXBP5 (ENSTNIG00000019309)
Eupecaria_A	ANCESTRAL SPECIES	10	ENSGT00940000159456	ENSGT00730000111119	ENSGT00940000159896	ENSGT00940000161610	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000156886.D	ENSGT00940000154677.b.a	ENSGT00940000153739.a.b.t	ENSGT00520000055578.a.b	ENSGT00940000153897.b.a.b	ENSGT00940000155459.x.b	ENSGT01030000234527.A.a.a.b.a	ENSGT00490000043329.a.b.g.a	ENSGT00940000155086.A	ENSGT00950000182941.a.a.a.b ##22	ENSGT00940000167949	ENSGT00940000156509	ENSGT00940000156674	ENSGT00940000155913.c	ENSGT00390000011642.f	ENSGT00940000154481.a.a.d	ENSGT00390000012924.a	ENSGT00390000013337	ENSGT00940000169194	ENSGT01050000244948.c.b.a.a.b	ENSGT01050000244948.c.b.b	ENSGT00950000183204.b.b.b	ENSGT00940000163723.B	ENSGT00730000111123	ENSGT01030000234595.A.b.a.a
Ballan wrasse	MODERN SPECIES	19	plekhh1 (ENSLBEG00000007962)	slc25a21 (ENSLBEG00000007921)	pax9 (ENSLBEG00000007878)	NKX2-8 (ENSLBEG00000007852)	nkx2.1 (ENSLBEG00000007839)	mbip (ENSLBEG00000007778)	RPS6KA5 (ENSLBEG00000007107)	hadhab (ENSLBEG00000006817)	kif3cb (ENSLBEG00000006751)	ENSLBEG00000006710	dtnbb (ENSLBEG00000006630)	dnmt3ab (ENSLBEG00000006546)	dpysl5a (ENSLBEG00000006483)	mapre3a (ENSLBEG00000006445)	OTOF (ENSLBEG00000006321)	ENSLBEG00000006260 ##22	ENSLBEG00000006215	ahi1 (ENSLBEG00000006126)	slc18b1 (ENSLBEG00000006089)	TULP4 (ENSLBEG00000005982)	ENSLBEG00000005912	ENSLBEG00000005445	ENSLBEG00000005330	rmnd1 (ENSLBEG00000005300)	ENSLBEG00000005267	ENSLBEG00000005240	stx11a (ENSLBEG00000005213)	fbxo30a (ENSLBEG00000005183)	ENSLBEG00000005160	SHPRH (ENSLBEG00000005117)	GRM1 (ENSLBEG00000005069)
Eupecaria_B	ANCESTRAL SPECIES	11	ENSGT00940000159456	ENSGT00730000111119	ENSGT00940000159896	ENSGT00940000161610	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000156886.D	ENSGT00940000154677.b.a	ENSGT00940000153739.a.b.t	ENSGT00520000055578.a.b	ENSGT00940000153897.b.a.b	ENSGT00940000155459.x.b	ENSGT01030000234527.A.a.a.b.a	ENSGT00490000043329.a.b.g.a	ENSGT00940000155086.A	ENSGT00950000182941.a.a.a.b ##22	ENSGT00940000167949	ENSGT00940000156509	ENSGT00940000156674	ENSGT00940000155913.c	ENSGT00390000011642.f	ENSGT00940000154481.a.a.d	ENSGT00390000012924.a	ENSGT00390000013337	ENSGT00940000169194	ENSGT01050000244948.c.b.a.a.b	ENSGT01050000244948.c.b.b	ENSGT00950000183204.b.b.b	ENSGT00940000163723.B	ENSGT00730000111123	ENSGT01030000234595.A.b.a.a
Perciformes	ANCESTRAL SPECIES	12	ENSGT00940000159456	ENSGT00730000111119	ENSGT00940000159896	ENSGT00940000161610	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000156886.D	ENSGT00940000154677.b.a	ENSGT00940000153739.a.b.t	ENSGT00520000055578.a.b	ENSGT00940000153897.b.a.b	ENSGT00940000155459.x.b	ENSGT01030000234527.A.a.a.b.a	ENSGT00490000043329.a.b.g.a	ENSGT00940000155086.A	ENSGT00950000182941.a.a.a.b ##22	ENSGT00940000177671	ENSGT00940000167949	ENSGT00940000156509	ENSGT00940000156674	ENSGT00940000155913.c	ENSGT00390000011642.f	ENSGT00940000154481.a.a.d	ENSGT00390000012924.a	ENSGT00390000013337	ENSGT00730000111244.a.a	ENSGT01050000244948.c.b.a.a.b	ENSGT01050000244948.c.b.b	ENSGT00950000183204.b.b.b	ENSGT00730000111123	ENSGT01030000234595.A.b.a.a
Perciformes_a	ANCESTRAL SPECIES	10	ENSGT00940000159456	ENSGT00730000111119	ENSGT00940000159896	ENSGT00940000161610	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000156886.D	ENSGT00940000154677.b.a	ENSGT00940000153739.a.b.t	ENSGT00520000055578.a.b	ENSGT00940000153897.b.a.b	ENSGT00940000155459.x.b	ENSGT01030000234527.A.a.a.b.a	ENSGT00490000043329.a.b.g.a	ENSGT00940000155086.A	ENSGT00950000182941.a.a.a.b ##22	ENSGT00940000177671	ENSGT00940000167949	ENSGT00940000156509	ENSGT00940000156674	ENSGT00940000155913.c	ENSGT00390000011642.f	ENSGT00390000013337	ENSGT00730000111244.a.a	ENSGT01050000244948.c.b.a.a.b	ENSGT01050000244948.c.b.b	ENSGT00950000183204.b.b.b	ENSGT00730000111123	ENSGT01030000234595.A.b.a.a	ENSGT00940000162477.d	ENSGT00950000182906.b.a.i.a
Channel bull blenny	MODERN SPECIES	14	plekhh1 (ENSCGOG00000023407)	slc25a21 (ENSCGOG00000023396)	pax9 (ENSCGOG00000023394)	NKX2-8 (ENSCGOG00000023392)	nkx2.1 (ENSCGOG00000023391)	mbip (ENSCGOG00000023387)	RPS6KA5 (ENSCGOG00000023253)	hadhab (ENSCGOG00000022932)	kif3cb (ENSCGOG00000022910)	ENSCGOG00000022905	dtnbb (ENSCGOG00000022062)	dnmt3ab (ENSCGOG00000021228)	dpysl5a (ENSCGOG00000021008)	mapre3a (ENSCGOG00000020998)	OTOF (ENSCGOG00000020965)	ENSCGOG00000020948 ##22	ENSCGOG00000020943	dact1 (ENSCGOG00000020934)	lgals3b (ENSCGOG00000020931)	jmjd7 (ENSCGOG00000020893)	tbpl2 (ENSCGOG00000020891)	atg14 (ENSCGOG00000020885)	ENSCGOG00000020884	ENSCGOG00000020864	ENSCGOG00000020860	ENSCGOG00000020858	tyro3 (ENSCGOG00000020834)	lrrc57 (ENSCGOG00000020832)	slc3a2b (ENSCGOG00000020793)	MDGA2 (ENSCGOG00000020243)	dhrs13a.2 (ENSCGOG00000020222)
Cottioidei	ANCESTRAL SPECIES	8	ENSGT00730000111119	ENSGT00940000159896	ENSGT00940000161610	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000156886.D	ENSGT00940000154677.b.a	ENSGT00940000153739.a.b.t	ENSGT00940000177261	ENSGT00520000055578.a.b	ENSGT00940000153897.b.a.b	ENSGT00940000155459.x.b	ENSGT01030000234527.A.a.a.b.a	ENSGT00490000043329.a.b.g.a	ENSGT00940000155086.A	ENSGT00950000182941.a.a.a.b ##22	ENSGT00940000177671	ENSGT00940000156509	ENSGT00940000156674	ENSGT00940000155913.c	ENSGT00390000011642.f	ENSGT00940000154481.a.a.d	ENSGT00390000012924.a	ENSGT00390000013337	ENSGT00730000111244.a.a	ENSGT01050000244948.c.b.b	ENSGT00950000183204.b.b.b	ENSGT00730000111123	ENSGT01030000234595.A.b.a.a	ENSGT00940000162477.d	ENSGT00950000182906.b.a.i.a
Stickleback	MODERN SPECIES	15	plekhh1 (ENSGACG00000011275)	slc25a21 (ENSGACG00000011289)	pax9 (ENSGACG00000011298)	NKX2-8 (ENSGACG00000011300)	nkx2.1 (ENSGACG00000011301)	mbip (ENSGACG00000011304)	RPS6KA5 (ENSGACG00000011310)	hadhab (ENSGACG00000011314)	kif3cb (ENSGACG00000011361)	ENSGACG00000011377	dtnbb (ENSGACG00000011386)	dnmt3ab (ENSGACG00000011391)	dpysl5a (ENSGACG00000011401)	mapre3a (ENSGACG00000011419)	OTOF (ENSGACG00000011463)	ENSGACG00000011476 ##22	ahi1 (ENSGACG00000011481)	slc18b1 (ENSGACG00000011487)	TULP4 (ENSGACG00000011498)	ENSGACG00000011511	ENSGACG00000011565	rmnd1 (ENSGACG00000011566)	ENSGACG00000011575	stx11a (ENSGACG00000011576)	fbxo30a (ENSGACG00000011577)	SHPRH (ENSGACG00000011582)	GRM1 (ENSGACG00000011598)	RAB32 (ENSGACG00000011607)	STXBP5 (ENSGACG00000011612)	SAMD5 (ENSGACG00000011624)	ddo (ENSGACG00000011625)
Eupecaria_C	ANCESTRAL SPECIES	8	ENSGT00940000159456	ENSGT00730000111119	ENSGT00940000159896	ENSGT00940000161610	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000156886.D	ENSGT00940000154677.b.a	ENSGT00940000153739.a.b.t	ENSGT00520000055578.a.b	ENSGT00940000153897.b.a.b	ENSGT00940000155459.x.b	ENSGT01030000234527.A.a.a.b.a	ENSGT00490000043329.a.b.g.a	ENSGT00940000155086.A	ENSGT00950000182941.a.a.a.b ##22	ENSGT00940000167949	ENSGT00940000156509	ENSGT00940000156674	ENSGT00940000155913.c	ENSGT00390000011642.f	ENSGT00940000154481.a.a.d	ENSGT00390000012924.a	ENSGT00390000013337	ENSGT00940000169194	ENSGT01050000244948.c.b.a.a.b	ENSGT01050000244948.c.b.b	ENSGT00950000183204.b.b.b	ENSGT00940000163723.B	ENSGT00730000111123	ENSGT01030000234595.A.b.a.a
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	25	ENSGT00940000159456	ENSGT00730000111119	ENSGT00940000159896	ENSGT00940000161610	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000156886.D	ENSGT00940000154677.b.a	ENSGT00940000153739.a.b.t	ENSGT00520000055578.a.b	ENSGT00940000153897.b.a.b	ENSGT00940000155459.x.b	ENSGT01030000234527.A.a.a.b.a	ENSGT00490000043329.a.b.g.a	ENSGT00940000155086.A	ENSGT00950000182941.a.a.a.b ##22	ENSGT00940000167949	ENSGT00940000156509	ENSGT00940000156674	ENSGT00940000155913.c	ENSGT00390000011642.f	ENSGT00940000154481.a.a.d	ENSGT00390000012924.a	ENSGT00390000013337	ENSGT00940000169194	ENSGT01050000244948.c.b.a.a.b	ENSGT01050000244948.c.b.b	ENSGT00950000183204.b.b.b	ENSGT00940000163723.B	ENSGT00730000111123	ENSGT01030000234595.A.b.a.a
Large yellow croaker	MODERN SPECIES	495	slc25a21 (ENSLCRG00005007494)	pax9 (ENSLCRG00005007497)	NKX2-8 (ENSLCRG00005007498)	nkx2.1 (ENSLCRG00005007500)	mbip (ENSLCRG00005007502)	RPS6KA5 (ENSLCRG00005007544)	hadhab (ENSLCRG00005009284)	kif3cb (ENSLCRG00005012391)	ENSLCRG00005012392	ENSLCRG00005012395	dtnbb (ENSLCRG00005012399)	dnmt3ab (ENSLCRG00005012433)	dpysl5a (ENSLCRG00005014646)	mapre3a (ENSLCRG00005014652)	OTOF (ENSLCRG00005014657)	ENSLCRG00005014661 ##22	ENSLCRG00005014662	ENSLCRG00005014663	ahi1 (ENSLCRG00005014664)	slc18b1 (ENSLCRG00005014670)	TULP4 (ENSLCRG00005014829)	ENSLCRG00005014854	ENSLCRG00005014947	rmnd1 (ENSLCRG00005014948)	ENSLCRG00005014957	ENSLCRG00005014962	stx11a (ENSLCRG00005014963)	fbxo30a (ENSLCRG00005014964)	SHPRH (ENSLCRG00005014966)	GRM1 (ENSLCRG00005014978)	ENSLCRG00005015378
European seabass	MODERN SPECIES	2	zfp36l1a (ENSDLAG00005013440)	plekhh1 (ENSDLAG00005013498)	slc25a21 (ENSDLAG00005014733)	pax9 (ENSDLAG00005014769)	NKX2-8 (ENSDLAG00005014816)	nkx2.1 (ENSDLAG00005030104)	mbip (ENSDLAG00005034945)	ENSDLAG00005014918	ENSDLAG00005015355	ENSDLAG00005017635	dtnbb (ENSDLAG00005017872)	dnmt3ab (ENSDLAG00005018806)	dpysl5a (ENSDLAG00005020641)	mapre3a (ENSDLAG00005020660)	ENSDLAG00005020695	ENSDLAG00005021018 ##22	ENSDLAG00005021032	ahi1 (ENSDLAG00005021046)	slc18b1 (ENSDLAG00005021061)	ENSDLAG00005021165	ENSDLAG00005021257	ENSDLAG00005021184	ENSDLAG00005023541	rmnd1 (ENSDLAG00005033321)	ENSDLAG00005023578	ENSDLAG00005023581	stx11a (ENSDLAG00005030078)	fbxo30a (ENSDLAG00005023587)	ENSDLAG00005030518	SHPRH (ENSDLAG00005023598)	GRM1 (ENSDLAG00005023791)
Percomorphaceae_D	ANCESTRAL SPECIES	10	ENSGT00730000111119	ENSGT00940000159896	ENSGT00940000161610	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000156886.D	ENSGT00940000154677.b.a	ENSGT00940000153739.a.b.t	ENSGT00940000177261	ENSGT00520000055578.a.b	ENSGT00940000153897.b.a.b	ENSGT00940000155459.x.b	ENSGT01030000234527.A.a.a.b.a	ENSGT00490000043329.a.b.g.a	ENSGT00940000155086.A	ENSGT00950000182941.a.a.a.b ##22	ENSGT00940000167949	ENSGT00940000156509	ENSGT00940000156674	ENSGT00940000155913.c	ENSGT00390000011642.f	ENSGT00940000154481.a.a.c.a	ENSGT00940000154481.a.a.c.b	ENSGT00390000012924.a	ENSGT00390000013337	ENSGT00940000169194	ENSGT01050000244948.c.b.a.a.b	ENSGT01050000244948.c.b.b	ENSGT00950000183204.b.b.b	ENSGT00940000163723.B	ENSGT00730000111123
Anabantaria	ANCESTRAL SPECIES	10	ENSGT00730000111119	ENSGT00940000159896	ENSGT00940000161610	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000156886.D	ENSGT00940000154677.b.a	ENSGT00940000153739.a.b.t	ENSGT00940000177261	ENSGT00520000055578.a.b	ENSGT00940000153897.b.a.b	ENSGT00940000155459.x.b	ENSGT01030000234527.A.a.a.b.a	ENSGT00490000043329.a.b.g.a	ENSGT00940000155086.A	ENSGT00950000182941.a.a.a.b ##22	ENSGT00940000167949	ENSGT00940000156509	ENSGT00940000156674	ENSGT00940000155913.c	ENSGT00390000011642.f	ENSGT00390000012924.a	ENSGT00390000013337	ENSGT00940000169194	ENSGT00730000111244.a.a	ENSGT01050000244948.c.b.a.a.b	ENSGT01050000244948.c.b.b	ENSGT00950000183204.b.b.b	ENSGT00730000111123	ENSGT01030000234595.A.b.a.a	ENSGT00940000162477.d
Anabantoidei	ANCESTRAL SPECIES	9	ENSGT00730000111119	ENSGT00940000159896	ENSGT00940000161610	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000156886.D	ENSGT00940000154677.b.a	ENSGT00940000153739.a.b.t	ENSGT00940000177261	ENSGT00520000055578.a.b	ENSGT00940000153897.b.a.b	ENSGT00940000155459.x.b	ENSGT01030000234527.A.a.a.b.a	ENSGT00490000043329.a.b.g.a	ENSGT00940000155086.A	ENSGT00950000182941.a.a.a.b ##22	ENSGT00940000177671	ENSGT00940000156509	ENSGT00940000156674	ENSGT00940000155913.c	ENSGT00390000011642.f	ENSGT00390000012924.a	ENSGT00390000013337	ENSGT00940000169194	ENSGT01050000244948.c.b.b	ENSGT00950000183204.b.b.b	ENSGT00730000111123	ENSGT01030000234595.A.b.a.a	ENSGT00950000182906.b.a.i.a	ENSGT00510000048701.b	ENSGT00940000156778.k
Climbing perch	MODERN SPECIES	13	plekhh1 (ENSATEG00000004373)	slc25a21 (ENSATEG00000004294)	pax9 (ENSATEG00000004252)	NKX2-8 (ENSATEG00000004236)	nkx2.1 (ENSATEG00000004137)	mbip (ENSATEG00000004129)	ENSATEG00000003636	ENSATEG00000003592	kif3cb (ENSATEG00000003388)	ENSATEG00000003374	dtnbb (ENSATEG00000003325)	dnmt3ab (ENSATEG00000003305)	dpysl5a (ENSATEG00000003213)	mapre3a (ENSATEG00000003194)	ENSATEG00000002991	ENSATEG00000029892 ##22	ENSATEG00000002965	ahi1 (ENSATEG00000002948)	slc18b1 (ENSATEG00000002932)	ENSATEG00000002836	ENSATEG00000002813	CCDC170 (ENSATEG00000002214)	rmnd1 (ENSATEG00000002208)	ENSATEG00000028434	stx11a (ENSATEG00000002167)	fbxo30a (ENSATEG00000002153)	ENSATEG00000002015	GRM1 (ENSATEG00000001983)	STXBP5 (ENSATEG00000001801)	ENSATEG00000001780	SASH1 (ENSATEG00000001769)
Siamese fighting fish	MODERN SPECIES	12	slc25a21 (ENSBSLG00000025690)	pax9 (ENSBSLG00000025706)	NKX2-8 (ENSBSLG00000025715)	nkx2.1 (ENSBSLG00000025719)	mbip (ENSBSLG00000025724)	RPS6KA5 (ENSBSLG00000025788)	hadhab (ENSBSLG00000026039)	kif3cb (ENSBSLG00000026213)	ENSBSLG00000026222	ASXL2 (ENSBSLG00000026228)	dtnbb (ENSBSLG00000026254)	dnmt3ab (ENSBSLG00000026316)	dpysl5a (ENSBSLG00000026409)	mapre3a (ENSBSLG00000026411)	OTOF (ENSBSLG00000026418)	ENSBSLG00000026433 ##22	ENSBSLG00000026440	ahi1 (ENSBSLG00000026441)	slc18b1 (ENSBSLG00000026452)	TULP4 (ENSBSLG00000026478)	ENSBSLG00000026480	rmnd1 (ENSBSLG00000026537)	ENSBSLG00000026539	stx11a (ENSBSLG00000026540)	fbxo30a (ENSBSLG00000026541)	SHPRH (ENSBSLG00000026543)	GRM1 (ENSBSLG00000026559)	STXBP5 (ENSBSLG00000026567)	SAMD5 (ENSBSLG00000026579)	ENSBSLG00000026580	ddo (ENSBSLG00000026583)
Zig-zag eel	MODERN SPECIES	14	plekhh1 (ENSMAMG00000000272)	slc25a21 (ENSMAMG00000000271)	pax9 (ENSMAMG00000000270)	NKX2-8 (ENSMAMG00000000269)	nkx2.1 (ENSMAMG00000000268)	mbip (ENSMAMG00000000267)	ENSMAMG00000000266	ENSMAMG00000000265	kif3cb (ENSMAMG00000000264)	ENSMAMG00000000263	dtnbb (ENSMAMG00000000262)	dnmt3ab (ENSMAMG00000000261)	dpysl5a (ENSMAMG00000000260)	mapre3a (ENSMAMG00000000259)	ENSMAMG00000000258	ENSMAMG00000000257 ##22	ENSMAMG00000000256	ahi1 (ENSMAMG00000000255)	slc18b1 (ENSMAMG00000000254)	ENSMAMG00000000253	ENSMAMG00000000252	ENSMAMG00000024394	rmnd1 (ENSMAMG00000000246)	ENSMAMG00000000245	ENSMAMG00000000244	stx11a (ENSMAMG00000000243)	fbxo30a (ENSMAMG00000000242)	SHPRH (ENSMAMG00000000240)	GRM1 (ENSMAMG00000000239)	RAB32 (ENSMAMG00000000238)	STXBP5 (ENSMAMG00000000237)
Carangaria	ANCESTRAL SPECIES	10	ENSGT00730000111119	ENSGT00940000159896	ENSGT00940000161610	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000156886.D	ENSGT00940000154677.b.a	ENSGT00940000153739.a.b.t	ENSGT00940000177261	ENSGT00520000055578.a.b	ENSGT00940000153897.b.a.b	ENSGT00940000155459.x.b	ENSGT01030000234527.A.a.a.b.a	ENSGT00490000043329.a.b.g.a	ENSGT00940000155086.A	ENSGT00950000182941.a.a.a.b ##22	ENSGT00940000167949	ENSGT00940000156509	ENSGT00940000156674	ENSGT00940000155913.c	ENSGT00390000011642.f	ENSGT00940000154481.a.a.c.a	ENSGT00940000154481.a.a.c.b	ENSGT00390000012924.a	ENSGT00390000013337	ENSGT00940000169194	ENSGT01050000244948.c.b.a.a.b	ENSGT01050000244948.c.b.b	ENSGT00950000183204.b.b.b	ENSGT00940000163723.B	ENSGT00730000111123
Carangaria_A	ANCESTRAL SPECIES	4	ENSGT00940000159456	ENSGT00730000111119	ENSGT00940000159896	ENSGT00940000161610	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000156886.D	ENSGT00940000154677.b.a	ENSGT00940000153739.a.b.t	ENSGT00520000055578.a.b	ENSGT00940000153897.b.a.b	ENSGT00940000155459.x.b	ENSGT01030000234527.A.a.a.b.a	ENSGT00490000043329.a.b.g.a	ENSGT00940000155086.A	ENSGT00950000182941.a.a.a.b ##22	ENSGT00940000167949	ENSGT00940000156509	ENSGT00940000156674	ENSGT00940000155913.c	ENSGT00390000011642.f	ENSGT00940000154481.a.a.c.a	ENSGT00940000154481.a.a.c.b	ENSGT00390000012924.a	ENSGT00390000013337	ENSGT00940000169194	ENSGT01050000244948.c.b.a.a.b	ENSGT01050000244948.c.b.b	ENSGT00950000183204.b.b.b	ENSGT00940000163723.B	ENSGT00730000111123
Barramundi perch	MODERN SPECIES	367												dnmt3ab (ENSLCAG00010018846)	dpysl5a (ENSLCAG00010019496)	mapre3a (ENSLCAG00010019515)	OTOF (ENSLCAG00010019550)	ENSLCAG00010019638 ##22	ENSLCAG00010019643	ahi1 (ENSLCAG00010019649)	slc18b1 (ENSLCAG00010019665)	TULP4 (ENSLCAG00010019671)	ENSLCAG00010019674	ENSLCAG00010019681	ENSLCAG00010019717	rmnd1 (ENSLCAG00010019723)	ENSLCAG00010019738	STX11 (ENSLCAG00010019742)	stx11a (ENSLCAG00010019747)	fbxo30a (ENSLCAG00010019750)	SHPRH (ENSLCAG00010019772)	GRM1 (ENSLCAG00010019829)	RAB32 (ENSLCAG00010019831)
Seriola	ANCESTRAL SPECIES	3	ENSGT00940000159456	ENSGT00730000111119	ENSGT00940000159896	ENSGT00940000161610	ENSGT00940000161107	ENSGT00510000047831	ENSGT00940000156886.D	ENSGT00940000154677.b.a	ENSGT00940000153739.a.b.t	ENSGT00520000055578.a.b	ENSGT00940000153897.b.a.b	ENSGT00940000155459.x.b	ENSGT01030000234527.A.a.a.b.a	ENSGT00490000043329.a.b.g.a	ENSGT00940000155086.A	ENSGT00950000182941.a.a.a.b ##22	ENSGT00940000167949	ENSGT00940000156509	ENSGT00940000156674	ENSGT00940000155913.c	ENSGT00390000011642.f	ENSGT00940000154481.a.a.c.a	ENSGT00390000012924.a	ENSGT00390000013337	ENSGT00940000169194	ENSGT01050000244948.c.b.a.a.b	ENSGT01050000244948.c.b.b	ENSGT00950000183204.b.b.b	ENSGT00940000163723.B	ENSGT00730000111123	ENSGT01030000234595.A.b.a.a
Greater amberjack	MODERN SPECIES	62	slc25a21 (ENSSDUG00000009483)	pax9 (ENSSDUG00000009460)	NKX2-8 (ENSSDUG00000009451)	nkx2.1 (ENSSDUG00000009444)	mbip (ENSSDUG00000009420)	RPS6KA5 (ENSSDUG00000009386)	hadhab (ENSSDUG00000009305)	kif3cb (ENSSDUG00000009283)	ENSSDUG00000009262	dtnbb (ENSSDUG00000009232)	ENSSDUG00000009225	dnmt3ab (ENSSDUG00000009066)	dpysl5a (ENSSDUG00000009017)	mapre3a (ENSSDUG00000008998)	OTOF (ENSSDUG00000008908)	ENSSDUG00000008844 ##22	ENSSDUG00000008815	ahi1 (ENSSDUG00000008760)	slc18b1 (ENSSDUG00000008721)	TULP4 (ENSSDUG00000008680)	ENSSDUG00000008669	ENSSDUG00000008552	ENSSDUG00000008466	ENSSDUG00000008403	ENSSDUG00000008386	rmnd1 (ENSSDUG00000008364)	ENSSDUG00000008336	STX11 (ENSSDUG00000008320)	stx11a (ENSSDUG00000008303)	fbxo30a (ENSSDUG00000008292)	ENSSDUG00000008274
Pinecone sodierfish	MODERN SPECIES	14	slc25a21 (ENSMMDG00005024491)	pax9 (ENSMMDG00005024490)	NKX2-8 (ENSMMDG00005024489)	nkx2.1 (ENSMMDG00005024488)	mbip (ENSMMDG00005024485)	RPS6KA5 (ENSMMDG00005024442)	hadhab (ENSMMDG00005024249)	kif3cb (ENSMMDG00005024221)	ASXL2 (ENSMMDG00005024218)	dtnbb (ENSMMDG00005024212)	dnmt3ab (ENSMMDG00005023789)	dpysl5a (ENSMMDG00005023741)	mapre3a (ENSMMDG00005023738)	OTOF (ENSMMDG00005023720)	ENSMMDG00005023707	ENSMMDG00005023698 ##22	ENSMMDG00005023695	ahi1 (ENSMMDG00005023691)	slc18b1 (ENSMMDG00005023679)	TULP4 (ENSMMDG00005023675)	ENSMMDG00005023673	ENSMMDG00005023573	ENSMMDG00005023534	rmnd1 (ENSMMDG00005023488)	ENSMMDG00005023481	ENSMMDG00005023480	STX11 (ENSMMDG00005023478)	stx11a (ENSMMDG00005023475)	fbxo30a (ENSMMDG00005023474)	SHPRH (ENSMMDG00005023450)	ENSMMDG00005023445
Spotted gar	MODERN SPECIES	647	ENSLOCG00000016161	UTRN (ENSLOCG00000016162)	agbl5 (ENSLOCG00000016175)	ost4 (ENSLOCG00000017994)	selenoi (ENSLOCG00000016178)	drc1 (ENSLOCG00000016179)	OTOF (ENSLOCG00000016183)	FNDC1 (ENSLOCG00000016185)	sod2 (ENSLOCG00000016188)	wtap (ENSLOCG00000016191)	acat2 (ENSLOCG00000016193)	tcp1 (ENSLOCG00000016197)	PLEKHG1 (ENSLOCG00000016199)	iyd (ENSLOCG00000016202)	ppp1r14c (ENSLOCG00000016203)	MAP7 (ENSLOCG00000016205) ##22	ENSLOCG00000016206	BCLAF1 (ENSLOCG00000016208) ##23	armc1l (ENSLOCG00000016210)	mtfr2 (ENSLOCG00000016211)	PDE7B (ENSLOCG00000016213)	ahi1 (ENSLOCG00000016215)	myb (ENSLOCG00000016218)	hbs1l (ENSLOCG00000016221)	aldh8a1 (ENSLOCG00000016225)	SGK1 (ENSLOCG00000016226)	ENSLOCG00000016227	slc2a12 (ENSLOCG00000016228)	tbpl1 (ENSLOCG00000016230)	tcf21 (ENSLOCG00000016232)	eya4 (ENSLOCG00000016233)
Reedfish	MODERN SPECIES	6	PLCB1 (ENSECRG00000011416)	hao1 (ENSECRG00000011686)	enpp1 (ENSECRG00000011769)	ENSECRG00000011803	ENSECRG00000011818	ezra (ENSECRG00000011838)	rsph3 (ENSECRG00000011873)	tagapb (ENSECRG00000011888)	sod2 (ENSECRG00000011913)	wtap (ENSECRG00000011932)	acat2 (ENSECRG00000011958)	tcp1 (ENSECRG00000011980)	PLEKHG1 (ENSECRG00000012027)	iyd (ENSECRG00000012047)	ppp1r14c (ENSECRG00000012056)	MAP7 (ENSECRG00000012118) ##22	ENSECRG00000012212	BCLAF1 (ENSECRG00000012238) ##23	armc1l (ENSECRG00000012261)	mtfr2 (ENSECRG00000012286)	PDE7B (ENSECRG00000012364)	ahi1 (ENSECRG00000012493)	myb (ENSECRG00000012557)	hbs1l (ENSECRG00000012621)	aldh8a1 (ENSECRG00000012650)	NHSL1 (ENSECRG00000012718)	ccdc28a (ENSECRG00000012795)	ECT2L (ENSECRG00000012867)	reps1 (ENSECRG00000012931)	abracl (ENSECRG00000012995)	heca (ENSECRG00000013003)
Sarcopterygii	ANCESTRAL SPECIES	163											ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00940000167949	ENSGT00950000183163.a.b ##23	ENSGT00940000164948	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00650000094590	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a
Tetrapoda	ANCESTRAL SPECIES	4	ENSGT00940000158749	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00940000167949	ENSGT00950000183163.a.b ##23	ENSGT00940000164948	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318
Amniota	ANCESTRAL SPECIES	1	ENSGT00940000158749	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00940000167949	ENSGT00950000183163.a.b ##23	ENSGT00940000164948	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00650000094590	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a
Sauria	ANCESTRAL SPECIES	1	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00530000064150	ENSGT00530000063484.a.m	ENSGT00530000063484.a.n	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00940000167949	ENSGT00950000183163.a.b ##23	ENSGT00940000164948	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00650000094590	ENSGT00940000156274	ENSGT00940000156799	ENSGT00680000101596	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174
Archelosauria	ANCESTRAL SPECIES	1	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00530000064150	ENSGT00530000063484.a.m	ENSGT00530000063484.a.n	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00940000167949	ENSGT00950000183163.a.b ##23	ENSGT00940000164948	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00650000094590	ENSGT00940000156274	ENSGT00940000156799	ENSGT00680000101596	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174
Archosauria	ANCESTRAL SPECIES	3	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00740000116829	ENSGT00530000064150	ENSGT00530000063484.a.m	ENSGT00530000063484.a.n	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00940000167949	ENSGT00950000183163.a.b ##23	ENSGT00940000164948	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00650000094590	ENSGT00940000156274	ENSGT00940000156799	ENSGT00680000101596	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174
Aves	ANCESTRAL SPECIES	10	ENSGT00940000158749	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00740000116829	ENSGT00530000064150	ENSGT00530000063484.a.m	ENSGT00530000063484.a.n	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00940000167949	ENSGT00950000183163.a.b ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00650000094590	ENSGT00940000156274	ENSGT00940000156799	ENSGT00680000101596	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a.b
Neognathae	ANCESTRAL SPECIES	2	ENSGT00940000158749	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00740000116829	ENSGT00530000064150	ENSGT00530000063484.a.m	ENSGT00530000063484.a.n	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00940000167949	ENSGT00950000183163.a.b ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00650000094590	ENSGT00940000156274	ENSGT00940000156799	ENSGT00680000101596	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a.b
Galloanserae	ANCESTRAL SPECIES	2	ENSGT00940000158749	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00740000116829	ENSGT00530000064150	ENSGT00530000063484.a.m	ENSGT00530000063484.a.n	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00940000167949	ENSGT00950000183163.a.b ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00650000094590	ENSGT00940000156274	ENSGT00940000156799	ENSGT00680000101596	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a.b
Anatidae	ANCESTRAL SPECIES		ENSGT00470000042287	ENSGT00940000158749	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00530000064150	ENSGT00530000063484.a.m	ENSGT00530000063484.a.n	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00940000167949	ENSGT00950000183163.a.b ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00680000101596	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a.b	ENSGT00390000018318.v
Pink-footed goose	MODERN SPECIES	2	ABRACL (ENSABRG00000011264)	REPS1 (ENSABRG00000011223)	CCDC28A (ENSABRG00000011207)	NHSL1 (ENSABRG00000011189)	ARFGEF3 (ENSABRG00000011113)	ENSABRG00000011104	ENSABRG00000011099	TNFAIP3 (ENSABRG00000011093)	OLIG3 (ENSABRG00000011084)	IFNGR1 (ENSABRG00000011074)	IL22RA2 (ENSABRG00000011065)	IL20RA (ENSABRG00000011059)	SLC35D3 (ENSABRG00000011045)	PEX7 (ENSABRG00000011002)	MAP3K5 (ENSABRG00000010976)	MAP7 (ENSABRG00000010940) ##22	ENSABRG00000010926	BCLAF1 (ENSABRG00000010906) ##23	MTFR2 (ENSABRG00000010901)	PDE7B (ENSABRG00000010894)	AHI1 (ENSABRG00000010871)	MYB (ENSABRG00000010866)	HBS1L (ENSABRG00000010857)	ALDH8A1 (ENSABRG00000010851)	ENSABRG00000010848	ENSABRG00000010824	SGK1 (ENSABRG00000010801)	SLC2A12 (ENSABRG00000010791)	TBPL1 (ENSABRG00000010783)	TCF21 (ENSABRG00000010780)	EYA4 (ENSABRG00000009530)
Duck	MODERN SPECIES	21	ABRACL (ENSAPLG00000003918)	REPS1 (ENSAPLG00000003179)	CCDC28A (ENSAPLG00000027699)	NHSL1 (ENSAPLG00000003036)	ARFGEF3 (ENSAPLG00000002724)	ENSAPLG00000030007	ENSAPLG00000002685	TNFAIP3 (ENSAPLG00000002302)	OLIG3 (ENSAPLG00000018777)	IFNGR1 (ENSAPLG00000002012)	IL22RA2 (ENSAPLG00000001211)	IL20RA (ENSAPLG00000001174)	SLC35D3 (ENSAPLG00000001170)	PEX7 (ENSAPLG00000016238)	MAP3K5 (ENSAPLG00000015796)	MAP7 (ENSAPLG00000012664) ##22	ENSAPLG00000012545	BCLAF1 (ENSAPLG00000007570) ##23	MTFR2 (ENSAPLG00000007596)	PDE7B (ENSAPLG00000007602)	ENSAPLG00000029770	ENSAPLG00000007676	MYB (ENSAPLG00000007728)	HBS1L (ENSAPLG00000007791)	ALDH8A1 (ENSAPLG00000007873)	SGK1 (ENSAPLG00000007896)	SLC2A12 (ENSAPLG00000007989)	TBPL1 (ENSAPLG00000007996)	TCF21 (ENSAPLG00000008024)	EYA4 (ENSAPLG00000008029)	RPS12 (ENSAPLG00000008543)
Phasianidae	ANCESTRAL SPECIES	3	ENSGT00940000158749	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00740000116829	ENSGT00530000064150	ENSGT00530000063484.a.m	ENSGT00530000063484.a.n	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00940000167949	ENSGT00950000183163.a.b ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00650000094590	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a.b	ENSGT00390000018318.v
Japanese quail	MODERN SPECIES	21	ENSCJPG00005008815	REPS1 (ENSCJPG00005008816)	ENSCJPG00005008818	NHSL1 (ENSCJPG00005008828)	ARFGEF3 (ENSCJPG00005008832)	ENSCJPG00005008847	ENSCJPG00005008850	TNFAIP3 (ENSCJPG00005008853)	OLIG3 (ENSCJPG00005008858)	IFNGR1 (ENSCJPG00005008861)	IL22RA2 (ENSCJPG00005008862)	IL20RA (ENSCJPG00005008863)	SLC35D3 (ENSCJPG00005008864)	PEX7 (ENSCJPG00005008865)	MAP3K5 (ENSCJPG00005008866)	MAP7 (ENSCJPG00005008867) ##22	ENSCJPG00005008868	BCLAF1 (ENSCJPG00005008869) ##23	MTFR2 (ENSCJPG00005008870)	PDE7B (ENSCJPG00005008871)	AHI1 (ENSCJPG00005008874)	MYB (ENSCJPG00005008875)	ENSCJPG00005008877	HBS1L (ENSCJPG00005008878)	ALDH8A1 (ENSCJPG00005008879)	SGK1 (ENSCJPG00005008885)	SLC2A12 (ENSCJPG00005008887)	TBPL1 (ENSCJPG00005008888)	TCF21 (ENSCJPG00005008889)	EYA4 (ENSCJPG00005008894)	RPS12 (ENSCJPG00005008897)
Phasianidae_b	ANCESTRAL SPECIES	2	ENSGT00940000158749	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00740000116829	ENSGT00530000064150	ENSGT00530000063484.a.m	ENSGT00530000063484.a.n	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00940000167949	ENSGT00950000183163.a.b ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a.a.a	ENSGT00390000018318.v	ENSGT00940000156674
Chicken	MODERN SPECIES	22	REPS1 (ENSGALG00010004214)	CCDC28A (ENSGALG00010004217)	NHSL1 (ENSGALG00010004233)	SMIM28 (ENSGALG00010004239)	ARFGEF3 (ENSGALG00010004245)	PERPB (ENSGALG00010004108)	PERPA (ENSGALG00010006794)	TNFAIP3 (ENSGALG00010006025)	OLIG3 (ENSGALG00010006374)	IFNGR1 (ENSGALG00010005291)	IL22RA2 (ENSGALG00010005297)	IL20RA (ENSGALG00010005314)	SLC35D3 (ENSGALG00010005318)	PEX7 (ENSGALG00010005336)	MAP3K5 (ENSGALG00010005342)	MAP7 (ENSGALG00010005364) ##22	ENSGALG00010005378	MTFR2 (ENSGALG00010005412)	BCLAF1 (ENSGALG00010005401) ##23	PDE7B (ENSGALG00010005437)	AHI1 (ENSGALG00010005462)	MYB (ENSGALG00010005884)	HBS1L (ENSGALG00010004639)	ALDH8A1 (ENSGALG00010006336)	SGK1 (ENSGALG00010006359)	SLC2A12 (ENSGALG00010005990)	TBPL1 (ENSGALG00010006173)	TCF21 (ENSGALG00010006187)	EYA4 (ENSGALG00010006239)	RPS12 (ENSGALG00010004255)	SLC18B1 (ENSGALG00010004285)
Turkey	MODERN SPECIES	11	MTRF1L (ENSMGAG00000012738)	RGS17 (ENSMGAG00000012749)	OPRM1 (ENSMGAG00000012751)	ENSMGAG00000012753	ENSMGAG00000012756	SCAF8 (ENSMGAG00000012762)	TIAM2 (ENSMGAG00000012772)	TFB1M (ENSMGAG00000012779)	CLDN20 (ENSMGAG00000015858)	NOX3 (ENSMGAG00000012787)	ENSMGAG00000020145	ENSMGAG00000013036	ENSMGAG00000013037	BCLAF1 (ENSMGAG00000013030) ##23	ENSMGAG00000021079	ENSMGAG00000013020 ##22	ENSMGAG00000021782	ENSMGAG00000020128	ENSMGAG00000013015	ENSMGAG00000013008	ENSMGAG00000013007	ENSMGAG00000013005	ENSMGAG00000013003	ENSMGAG00000019905	ENSMGAG00000012999	ENSMGAG00000013001	ENSMGAG00000012996	NHSL1 (ENSMGAG00000012975)	ENSMGAG00000012965	ENSMGAG00000012973	ABRACL (ENSMGAG00000021963)
Neognathae_b	ANCESTRAL SPECIES	1	ENSGT00940000158749	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00740000116829	ENSGT00530000064150	ENSGT00530000063484.a.m	ENSGT00530000063484.a.n	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00940000167949	ENSGT00950000183163.a.b ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00680000101596	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a.b	ENSGT00390000018318.v
Passeriformes	ANCESTRAL SPECIES	2	ENSGT00470000042287	ENSGT00940000158749	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00530000064150	ENSGT00530000063484.a.m	ENSGT00530000063484.a.n	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00940000167949	ENSGT00950000183163.a.b ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00390000013215	ENSGT01050000244948.c.b	ENSGT00940000153467.a.a	ENSGT00390000010101	ENSGT00950000183204.b.b.b	ENSGT00730000111123	ENSGT01030000234595.A.b	ENSGT00940000162477	ENSGT00390000014904	ENSGT00950000182906.b.a	ENSGT00510000048701
Passeriformes_d	ANCESTRAL SPECIES	2	ENSGT00470000042287	ENSGT00940000158749	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00530000064150	ENSGT00530000063484.a.m	ENSGT00530000063484.a.n	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00940000167949	ENSGT00950000183163.a.b ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00390000013215	ENSGT01050000244948.c.b	ENSGT00940000153467.a.a	ENSGT00390000010101	ENSGT00950000183204.b.b.b	ENSGT00730000111123	ENSGT01030000234595.A.b	ENSGT00940000162477	ENSGT00390000014904	ENSGT00950000182906.b.a	ENSGT00510000048701
Passeriformes_g	ANCESTRAL SPECIES	1	ENSGT00470000042287	ENSGT00940000158749	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00530000064150	ENSGT00530000063484.a.m	ENSGT00530000063484.a.n	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00940000167949	ENSGT00950000183163.a.b ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00390000013215	ENSGT01050000244948.c.b	ENSGT00940000153467.a.a	ENSGT00390000010101	ENSGT00950000183204.b.b.b	ENSGT00730000111123	ENSGT01030000234595.A.b	ENSGT00940000162477	ENSGT00390000014904	ENSGT00950000182906.b.a	ENSGT00510000048701
Passeroidea	ANCESTRAL SPECIES		ENSGT00470000042287	ENSGT00940000158749	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00530000064150	ENSGT00530000063484.a.m	ENSGT00530000063484.a.n	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00940000167949	ENSGT00950000183163.a.b ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00390000013215	ENSGT01050000244948.c.b	ENSGT00940000153467.a.a	ENSGT00390000010101	ENSGT00950000183204.b.b.b	ENSGT00730000111123	ENSGT01030000234595.A.b	ENSGT00940000162477	ENSGT00390000014904	ENSGT00950000182906.b.a	ENSGT00510000048701
Zebra finch	MODERN SPECIES	23	ABRACL (ENSTGUG00000010932)	REPS1 (ENSTGUG00000010917)	CCDC28A (ENSTGUG00000010912)	NHSL1 (ENSTGUG00000010910)	ARFGEF3 (ENSTGUG00000010902)	ENSTGUG00000028968	ENSTGUG00000025381	TNFAIP3 (ENSTGUG00000010895)	OLIG3 (ENSTGUG00000010892)	IFNGR1 (ENSTGUG00000029412)	IL22RA2 (ENSTGUG00000010883)	IL20RA (ENSTGUG00000010881)	PEX7 (ENSTGUG00000010872)	SLC35D3 (ENSTGUG00000010879)	MAP3K5 (ENSTGUG00000010854)	MAP7 (ENSTGUG00000010845) ##22	ENSTGUG00000022971	BCLAF1 (ENSTGUG00000010835) ##23	MTFR2 (ENSTGUG00000010828)	PDE7B (ENSTGUG00000010811)	SF3B5 (ENSTGUG00000010810)	STX11 (ENSTGUG00000010809)	UTRN (ENSTGUG00000010792)	EPM2A (ENSTGUG00000010784)	FBXO30 (ENSTGUG00000010780)	ENSTGUG00000027835	SHPRH (ENSTGUG00000010769)	GRM1 (ENSTGUG00000010757)	RAB32 (ENSTGUG00000010754)	ADGB (ENSTGUG00000010743)	STXBP5 (ENSTGUG00000010707)
Common canary	MODERN SPECIES	20	ABRACL (ENSSCAG00000003188)	REPS1 (ENSSCAG00000003182)	CCDC28A (ENSSCAG00000003177)	NHSL1 (ENSSCAG00000003161)	ARFGEF3 (ENSSCAG00000003112)	ENSSCAG00000003099	ENSSCAG00000003098	TNFAIP3 (ENSSCAG00000003091)	OLIG3 (ENSSCAG00000003086)	ENSSCAG00000003075	IL22RA2 (ENSSCAG00000003070)	IL20RA (ENSSCAG00000003065)	SLC35D3 (ENSSCAG00000003062)	PEX7 (ENSSCAG00000003055)	MAP3K5 (ENSSCAG00000002961)	MAP7 (ENSSCAG00000002916) ##22	ENSSCAG00000002904	BCLAF1 (ENSSCAG00000002878) ##23	MTFR2 (ENSSCAG00000002866)	PDE7B (ENSSCAG00000002860)	SF3B5 (ENSSCAG00000002853)	STX11 (ENSSCAG00000002848)	UTRN (ENSSCAG00000002753)	EPM2A (ENSSCAG00000002716)	FBXO30 (ENSSCAG00000002710)	SHPRH (ENSSCAG00000002701)	GRM1 (ENSSCAG00000002665)	RAB32 (ENSSCAG00000002655)	ENSSCAG00000002654	STXBP5 (ENSSCAG00000000855)
Medium ground finch	MODERN SPECIES	19	ABRACL (ENSGFOG00000000514)	REPS1 (ENSGFOG00000000287)	CCDC28A (ENSGFOG00000000244)	NHSL1 (ENSGFOG00000000232)	ARFGEF3 (ENSGFOG00000000107)	ENSGFOG00000000069	ENSGFOG00000000067	TNFAIP3 (ENSGFOG00000000065)	OLIG3 (ENSGFOG00000000063)	ENSGFOG00000000060	IL22RA2 (ENSGFOG00000000056)	IL20RA (ENSGFOG00000000052)	SLC35D3 (ENSGFOG00000000049)	PEX7 (ENSGFOG00000000046)	MAP3K5 (ENSGFOG00000010728)	MAP7 (ENSGFOG00000010697) ##22	ENSGFOG00000010691	BCLAF1 (ENSGFOG00000010684) ##23	MTFR2 (ENSGFOG00000010676)	PDE7B (ENSGFOG00000010661)	SF3B5 (ENSGFOG00000010657)	STX11 (ENSGFOG00000010650)	UTRN (ENSGFOG00000010557)	EPM2A (ENSGFOG00000010537)	FBXO30 (ENSGFOG00000010534)	SHPRH (ENSGFOG00000010511)	GRM1 (ENSGFOG00000010494)	RAB32 (ENSGFOG00000010487)	STXBP5 (ENSGFOG00000009605)	ENSGFOG00000009544	SASH1 (ENSGFOG00000009483)
Flycatcher	MODERN SPECIES	21	ABRACL (ENSFALG00000012818)	REPS1 (ENSFALG00000012821)	CCDC28A (ENSFALG00000012829)	NHSL1 (ENSFALG00000012835)	ARFGEF3 (ENSFALG00000012840)	ENSFALG00000027131	ENSFALG00000028881	TNFAIP3 (ENSFALG00000012857)	OLIG3 (ENSFALG00000028727)	IFNGR1 (ENSFALG00000012866)	IL22RA2 (ENSFALG00000012869)	IL20RA (ENSFALG00000012875)	SLC35D3 (ENSFALG00000012882)	PEX7 (ENSFALG00000012884)	MAP3K5 (ENSFALG00000012890)	MAP7 (ENSFALG00000012907) ##22	ENSFALG00000012925	BCLAF1 (ENSFALG00000012928) ##23	MTFR2 (ENSFALG00000012933)	PDE7B (ENSFALG00000024524)	SF3B5 (ENSFALG00000015012)	STX11 (ENSFALG00000015034)	UTRN (ENSFALG00000012991)	ENSFALG00000027687	EPM2A (ENSFALG00000013054)	FBXO30 (ENSFALG00000013057)	SHPRH (ENSFALG00000013061)	GRM1 (ENSFALG00000013082)	ENSFALG00000013096	ADGB (ENSFALG00000013099)	STXBP5 (ENSFALG00000013101)
Great tit	MODERN SPECIES	22	ABRACL (ENSPMJG00000008172)	REPS1 (ENSPMJG00000008170)	CCDC28A (ENSPMJG00000008169)	NHSL1 (ENSPMJG00000008158)	ARFGEF3 (ENSPMJG00000008023)	ENSPMJG00000007992	ENSPMJG00000007991	TNFAIP3 (ENSPMJG00000007989)	OLIG3 (ENSPMJG00000007987)	IFNGR1 (ENSPMJG00000007955)	IL22RA2 (ENSPMJG00000007952)	IL20RA (ENSPMJG00000007951)	SLC35D3 (ENSPMJG00000007950)	PEX7 (ENSPMJG00000007944)	MAP3K5 (ENSPMJG00000007880)	MAP7 (ENSPMJG00000007877) ##22	ENSPMJG00000007875	BCLAF1 (ENSPMJG00000007819) ##23	MTFR2 (ENSPMJG00000007817)	PDE7B (ENSPMJG00000007811)	SF3B5 (ENSPMJG00000007762)	STX11 (ENSPMJG00000007760)	UTRN (ENSPMJG00000007742)	EPM2A (ENSPMJG00000007665)	FBXO30 (ENSPMJG00000007660)	SHPRH (ENSPMJG00000007567)	GRM1 (ENSPMJG00000007559)	RAB32 (ENSPMJG00000007510)	ADGB (ENSPMJG00000007507)	STXBP5 (ENSPMJG00000007452)	SAMD5 (ENSPMJG00000007450)
Neognathae_c	ANCESTRAL SPECIES	5	ENSGT00940000158749	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00740000116829	ENSGT00530000064150	ENSGT00530000063484.a.m	ENSGT00530000063484.a.n	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00950000183163.a.b ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00680000101596	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a.b	ENSGT00390000018318.v	ENSGT00940000156674
Golden eagle	MODERN SPECIES	24	HECA (ENSACCG00020009362)	ABRACL (ENSACCG00020009384)	REPS1 (ENSACCG00020009423)	CCDC28A (ENSACCG00020009445)	NHSL1 (ENSACCG00020009456)	ARFGEF3 (ENSACCG00020009597)	ENSACCG00020009673	ENSACCG00020009689	TNFAIP3 (ENSACCG00020009700)	IFNGR1 (ENSACCG00020009731)	IL22RA2 (ENSACCG00020009750)	IL20RA (ENSACCG00020009766)	SLC35D3 (ENSACCG00020009782)	PEX7 (ENSACCG00020009809)	MAP3K5 (ENSACCG00020010052)	MAP7 (ENSACCG00020010236) ##22	BCLAF1 (ENSACCG00020010306) ##23	MTFR2 (ENSACCG00020010333)	PDE7B (ENSACCG00020010364)	AHI1 (ENSACCG00020010490)	MYB (ENSACCG00020010629)	HBS1L (ENSACCG00020010711)	ALDH8A1 (ENSACCG00020010741)	ENSACCG00020010755	SGK1 (ENSACCG00020010771)	SLC2A12 (ENSACCG00020010793)	TBPL1 (ENSACCG00020010801)	TCF21 (ENSACCG00020010810)	EYA4 (ENSACCG00020010829)	RPS12 (ENSACCG00020010852)	SLC18B1 (ENSACCG00020010875)
Kakapo	MODERN SPECIES	23	CCDC28A (ENSSHBG00005000367)	NHSL1 (ENSSHBG00005008855)	SMIM28 (ENSSHBG00005008871)	ARFGEF3 (ENSSHBG00005009013)	ENSSHBG00005011534	ENSSHBG00005011558	TNFAIP3 (ENSSHBG00005011572)	OLIG3 (ENSSHBG00005011590)	IFNGR1 (ENSSHBG00005011606)	IL22RA2 (ENSSHBG00005011662)	IL20RA (ENSSHBG00005012074)	SLC35D3 (ENSSHBG00005012096)	PEX7 (ENSSHBG00005012108)	ENSSHBG00005012139	ENSSHBG00005012177	MAP7 (ENSSHBG00005012212) ##22	BCLAF1 (ENSSHBG00005012302) ##23	MTFR2 (ENSSHBG00005012363)	PDE7B (ENSSHBG00005012395)	AHI1 (ENSSHBG00005012471)	MYB (ENSSHBG00005012616)	HBS1L (ENSSHBG00005012719)	ALDH8A1 (ENSSHBG00005012753)	ENSSHBG00005012780	SGK1 (ENSSHBG00005012816)	SLC2A12 (ENSSHBG00005012830)	TBPL1 (ENSSHBG00005012846)	TCF21 (ENSSHBG00005012861)	EYA4 (ENSSHBG00005012959)	RPS12 (ENSSHBG00005013736)	SLC18B1 (ENSSHBG00005013767)
African ostrich	MODERN SPECIES	1073	ABRACL (ENSSCUG00000014441)	REPS1 (ENSSCUG00000014439)	CCDC28A (ENSSCUG00000014438)	NHSL1 (ENSSCUG00000014431)	ARFGEF3 (ENSSCUG00000014402)	ENSSCUG00000014396	ENSSCUG00000014395	TNFAIP3 (ENSSCUG00000014392)	OLIG3 (ENSSCUG00000014391)	IFNGR1 (ENSSCUG00000014389)	IL22RA2 (ENSSCUG00000014388)	IL20RA (ENSSCUG00000014385)	SLC35D3 (ENSSCUG00000014382)	PEX7 (ENSSCUG00000014381)	MAP3K5 (ENSSCUG00000014363)	MAP7 (ENSSCUG00000014349) ##22	ENSSCUG00000014345	BCLAF1 (ENSSCUG00000014341) ##23	MTFR2 (ENSSCUG00000014339)	PDE7B (ENSSCUG00000014336)	AHI1 (ENSSCUG00000014329)	MYB (ENSSCUG00000014318)	HBS1L (ENSSCUG00000014221)	ALDH8A1 (ENSSCUG00000014132)	SGK1 (ENSSCUG00000014126)	SLC2A12 (ENSSCUG00000014121)	TBPL1 (ENSSCUG00000014118)	TCF21 (ENSSCUG00000014112)	EYA4 (ENSSCUG00000014105)	RPS12 (ENSSCUG00000014088)	SLC18B1 (ENSSCUG00000014080)
Australian saltwater crocodile	MODERN SPECIES	60	ECT2L (ENSCPRG00005001356)	CCDC28A (ENSCPRG00005001360)	NHSL1 (ENSCPRG00005001408)	ARFGEF3 (ENSCPRG00005001438)	ENSCPRG00005001515	ENSCPRG00005001520	TNFAIP3 (ENSCPRG00005001541)	OLIG3 (ENSCPRG00005001547)	IFNGR1 (ENSCPRG00005001587)	IL22RA2 (ENSCPRG00005001608)	IL20RA (ENSCPRG00005001614)	SLC35D3 (ENSCPRG00005001621)	PEX7 (ENSCPRG00005001638)	ENSCPRG00005001642	MAP3K5 (ENSCPRG00005001647)	MAP7 (ENSCPRG00005001710) ##22	BCLAF1 (ENSCPRG00005001752) ##23	ENSCPRG00005001856	MTFR2 (ENSCPRG00005001894)	PDE7B (ENSCPRG00005001905)	AHI1 (ENSCPRG00005001962)	MYB (ENSCPRG00005002016)	HBS1L (ENSCPRG00005002062)	ALDH8A1 (ENSCPRG00005002075)
Cryptodira	ANCESTRAL SPECIES	1	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00530000064150	ENSGT00530000063484.a.m	ENSGT00530000063484.a.n	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00960000189180	ENSGT00950000183163.a.b ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00680000101596	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a.b	ENSGT00390000018318.u.b.b
Testudinoidea	ANCESTRAL SPECIES	32	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00530000064150	ENSGT00530000063484.a.m	ENSGT00530000063484.a.n	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00950000183163.a.b ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00680000101596	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a.b	ENSGT00950000182978.A.a.a.a.b	ENSGT00390000018318.u.b.b
Emydidae	ANCESTRAL SPECIES	46	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00530000064150	ENSGT00530000063484.a.m	ENSGT00530000063484.a.n	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00950000183163.a.b ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00680000101596	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a.b	ENSGT00950000182978.A.a.a.a.b	ENSGT00390000018318.u.b.b
painted turtle	MODERN SPECIES	12	REPS1 (ENSCPBG00000017195)	ECT2L (ENSCPBG00000017197)	CCDC28A (ENSCPBG00000017201)	NHSL1 (ENSCPBG00000017203)	HEBP2 (ENSCPBG00000017208)	ARFGEF3 (ENSCPBG00000017225)	ENSCPBG00000017530	ENSCPBG00000017531	TNFAIP3 (ENSCPBG00000017533)	OLIG3 (ENSCPBG00000017537)	IFNGR1 (ENSCPBG00000017540)	IL22RA2 (ENSCPBG00000017544)	IL20RA (ENSCPBG00000017546)	PEX7 (ENSCPBG00000017550)	MAP3K5 (ENSCPBG00000017559)	MAP7 (ENSCPBG00000017573) ##22	BCLAF1 (ENSCPBG00000017585) ##23	MTFR2 (ENSCPBG00000017594)	PDE7B (ENSCPBG00000017603)	AHI1 (ENSCPBG00000017619)	MYB (ENSCPBG00000017622)	HBS1L (ENSCPBG00000017635)	ALDH8A1 (ENSCPBG00000017640)	ENSCPBG00000017645	SGK1 (ENSCPBG00000017648)	SLC2A12 (ENSCPBG00000017651)	TBPL1 (ENSCPBG00000017654)	TCF21 (ENSCPBG00000017657)	EYA4 (ENSCPBG00000017662)	RPS12 (ENSCPBG00000017677)	SLC18B1 (ENSCPBG00000017686)
Three-toed box turtle	MODERN SPECIES	31	REPS1 (ENSTMTG00000000464)	ECT2L (ENSTMTG00000000533)	CCDC28A (ENSTMTG00000000567)	NHSL1 (ENSTMTG00000000586)	HEBP2 (ENSTMTG00000000609)	ARFGEF3 (ENSTMTG00000000760)	PERP (ENSTMTG00000001548)	TNFAIP3 (ENSTMTG00000001555)	OLIG3 (ENSTMTG00000001569)	IFNGR1 (ENSTMTG00000001577)	IL22RA2 (ENSTMTG00000001584)	IL20RA (ENSTMTG00000001589)	SLC35D3 (ENSTMTG00000001600)	PEX7 (ENSTMTG00000001605)	MAP3K5 (ENSTMTG00000001615)	MAP7 (ENSTMTG00000001650) ##22	BCLAF1 (ENSTMTG00000001674) ##23	MTFR2 (ENSTMTG00000001701)	PDE7B (ENSTMTG00000001718)	MYB (ENSTMTG00000001755)	HBS1L (ENSTMTG00000001830)	ALDH8A1 (ENSTMTG00000001851)	ENSTMTG00000001860	SGK1 (ENSTMTG00000001868)	SLC2A12 (ENSTMTG00000001887)	TBPL1 (ENSTMTG00000001895)	TCF21 (ENSTMTG00000001901)	ENSTMTG00000001913	ENSTMTG00000001941	RPS12 (ENSTMTG00000001949)	ENSTMTG00000001969
Testudinidae	ANCESTRAL SPECIES	10	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00530000064150	ENSGT00530000063484.a.m	ENSGT00530000063484.a.n	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00950000183163.a.b ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00680000101596	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a.b	ENSGT00390000018318.u.b.b	ENSGT00940000156674.n
Goode s thornscrub tortoise	MODERN SPECIES	17	ECT2L (ENSGEVG00005008180)	CCDC28A (ENSGEVG00005008151)	NHSL1 (ENSGEVG00005007994)	ENSGEVG00005007932	ARFGEF3 (ENSGEVG00005007723)	ENSGEVG00005007670	ENSGEVG00005007635	TNFAIP3 (ENSGEVG00005007607)	OLIG3 (ENSGEVG00005007591)	ENSGEVG00005007546	IL22RA2 (ENSGEVG00005007496)	IL20RA (ENSGEVG00005007442)	SLC35D3 (ENSGEVG00005007413)	PEX7 (ENSGEVG00005007361)	MAP3K5 (ENSGEVG00005005197)	MAP7 (ENSGEVG00005004461) ##22	BCLAF1 (ENSGEVG00005004317) ##23	MTFR2 (ENSGEVG00005004278)	PDE7B (ENSGEVG00005004167)	AHI1 (ENSGEVG00005004094)	MYB (ENSGEVG00005004048)	HBS1L (ENSGEVG00005004019)	ALDH8A1 (ENSGEVG00005004008)	ENSGEVG00005003999	SGK1 (ENSGEVG00005003985)	SLC2A12 (ENSGEVG00005003943)	TBPL1 (ENSGEVG00005003916)	TCF21 (ENSGEVG00005003908)	EYA4 (ENSGEVG00005003854)	RPS12 (ENSGEVG00005003792)	ENSGEVG00005003768
Abingdon island giant tortoise	MODERN SPECIES	227	REPS1 (ENSCABG00000010453)	ECT2L (ENSCABG00000010617)	CCDC28A (ENSCABG00000010621)	HEBP2 (ENSCABG00000010625)	ARFGEF3 (ENSCABG00000010627)	ENSCABG00000010628	ENSCABG00000010629	TNFAIP3 (ENSCABG00000010638)	OLIG3 (ENSCABG00000010641)	IFNGR1 (ENSCABG00000010642)	IL22RA2 (ENSCABG00000010644)	IL20RA (ENSCABG00000010646)	SLC35D3 (ENSCABG00000010649)	PEX7 (ENSCABG00000010655)	MAP3K5 (ENSCABG00000010658)	MAP7 (ENSCABG00000010662) ##22	BCLAF1 (ENSCABG00000010663) ##23	MTFR2 (ENSCABG00000010664)	PDE7B (ENSCABG00000010666)	NAP1L4 (ENSCABG00000010670)	PHLDA2 (ENSCABG00000010675)	SLC22A18 (ENSCABG00000010676)	CDKN1C (ENSCABG00000010678)	KCNQ1 (ENSCABG00000010679)	TRPM5 (ENSCABG00000010689)	TSSC4 (ENSCABG00000010694)	CD81 (ENSCABG00000010697)	ENSCABG00000010701	TH (ENSCABG00000010704)	ENSCABG00000010705	IGF2 (ENSCABG00000010706)
Chinese turtle	MODERN SPECIES	1157																MAP7 (ENSPSIG00000006272) ##22	ENSPSIG00000007058	BCLAF1 (ENSPSIG00000007141) ##23	MTFR2 (ENSPSIG00000009634)	PDE7B (ENSPSIG00000010619)	AHI1 (ENSPSIG00000010898)	MYB (ENSPSIG00000011892)	HBS1L (ENSPSIG00000016467)
Lepidosauria	ANCESTRAL SPECIES		ENSGT00940000158749	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00530000064150	ENSGT00530000063484.a.m	ENSGT00530000063484.a.n	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00940000167949	ENSGT00950000183163.a.b ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00680000101596	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.v
Episquamata	ANCESTRAL SPECIES		ENSGT00940000158749	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00530000064150	ENSGT00530000063484.a.m	ENSGT00530000063484.a.n	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00940000167949	ENSGT00950000183163.a.b ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00680000101596	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.v
Laterata	ANCESTRAL SPECIES	4	ENSGT00940000158749	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00530000064150	ENSGT00530000063484.a.m	ENSGT00530000063484.a.n	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00940000167949	ENSGT00950000183163.a.b ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.v	ENSGT00940000173986
Common wall lizard	MODERN SPECIES	11	ENSPMRG00000004757	NHSL1 (ENSPMRG00000004732)	HEBP2 (ENSPMRG00000004720)	ARFGEF3 (ENSPMRG00000004701)	ENSPMRG00000004685	ENSPMRG00000004677	TNFAIP3 (ENSPMRG00000004670)	OLIG3 (ENSPMRG00000004665)	ENSPMRG00000004656	IL20RA (ENSPMRG00000004637)	SLC35D3 (ENSPMRG00000004628)	PEX7 (ENSPMRG00000004619)	MAP3K5 (ENSPMRG00000004592)	ENSPMRG00000004584	ENSPMRG00000004581	MAP7 (ENSPMRG00000004562) ##22	ENSPMRG00000004544	BCLAF1 (ENSPMRG00000004526) ##23	MTFR2 (ENSPMRG00000004501)	ENSPMRG00000004495	PDE7B (ENSPMRG00000004470)	ENSPMRG00000004408	MYB (ENSPMRG00000004373)	HBS1L (ENSPMRG00000004367)	ALDH8A1 (ENSPMRG00000004364)	ENSPMRG00000004360	SGK1 (ENSPMRG00000004357)	SLC2A12 (ENSPMRG00000004353)	TBPL1 (ENSPMRG00000004347)	TCF21 (ENSPMRG00000004342)	EYA4 (ENSPMRG00000004306)
Argentine black and white tegu	MODERN SPECIES	2	REPS1 (ENSSMRG00000000991)	ECT2L (ENSSMRG00000001050)	CCDC28A (ENSSMRG00000001081)	NHSL1 (ENSSMRG00000001174)	HEBP2 (ENSSMRG00000001199)	ARFGEF3 (ENSSMRG00000001249)	ENSSMRG00000001276	ENSSMRG00000001281	TNFAIP3 (ENSSMRG00000001286)	OLIG3 (ENSSMRG00000001319)	ENSSMRG00000001320	IFNGR1 (ENSSMRG00000001420)	SLC35D3 (ENSSMRG00000001426)	PEX7 (ENSSMRG00000001467)	MAP3K5 (ENSSMRG00000001499)	MAP7 (ENSSMRG00000001536) ##22	BCLAF1 (ENSSMRG00000001636) ##23	ENSSMRG00000001660	MTFR2 (ENSSMRG00000001661)	PDE7B (ENSSMRG00000001688)	AHI1 (ENSSMRG00000001768)	MYB (ENSSMRG00000001833)	HBS1L (ENSSMRG00000001904)	ALDH8A1 (ENSSMRG00000001931)	SGK1 (ENSSMRG00000001940)	SLC2A12 (ENSSMRG00000001963)	TBPL1 (ENSSMRG00000001966)	TCF21 (ENSSMRG00000001971)	EYA4 (ENSSMRG00000002159)	RPS12 (ENSSMRG00000002196)	ENSSMRG00000002204
Toxicofera	ANCESTRAL SPECIES		ENSGT00940000158749	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00530000064150	ENSGT00530000063484.a.m	ENSGT00530000063484.a.n	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00940000167949	ENSGT00950000183163.a.b ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00680000101596	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.v
Elapidae	ANCESTRAL SPECIES		ENSGT00940000158749	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00530000064150	ENSGT00530000063484.a.m	ENSGT00530000063484.a.n	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00940000167949	ENSGT00950000183163.a.b ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00680000101596	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.v
Elapidae_a	ANCESTRAL SPECIES	34	ENSGT00500000044928	ENSGT00470000042287	ENSGT00940000158749	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00530000064150	ENSGT00530000063484.a.m	ENSGT00530000063484.a.n	ENSGT00940000158448	ENSGT00940000160850	ENSGT00940000160083	ENSGT00940000157264.a	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00940000167949	ENSGT00950000183163.a.b ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00680000101596	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.v
Acanthophiinae	ANCESTRAL SPECIES	34	ENSGT00470000042287	ENSGT00940000158749	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00530000064150	ENSGT00530000063484.a.m	ENSGT00530000063484.a.n	ENSGT00940000158448	ENSGT00940000160850	ENSGT00990000211691	ENSGT00940000160083	ENSGT00940000157264.a	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00940000167949	ENSGT00950000183163.a.b ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00680000101596	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.v
Mainland tiger snake	MODERN SPECIES	14	CCDC28A (ENSNSUG00000009903)	NHSL1 (ENSNSUG00000009902)	HEBP2 (ENSNSUG00000009901)	ARFGEF3 (ENSNSUG00000009900)	ENSNSUG00000009899	ENSNSUG00000009896	TNFAIP3 (ENSNSUG00000009847)	OLIG3 (ENSNSUG00000009846)	ENSNSUG00000009845	ENSNSUG00000009844	SLC35D3 (ENSNSUG00000009843)	PEX7 (ENSNSUG00000009842)	ENSNSUG00000009841	ENSNSUG00000009840	ENSNSUG00000009839	MAP7 (ENSNSUG00000009838) ##22	ENSNSUG00000009837	BCLAF1 (ENSNSUG00000009836) ##23	MTFR2 (ENSNSUG00000009835)	PDE7B (ENSNSUG00000009834)	ENSNSUG00000009833	AHI1 (ENSNSUG00000009832)	MYB (ENSNSUG00000009410)	ENSNSUG00000009409	HBS1L (ENSNSUG00000007992)	ALDH8A1 (ENSNSUG00000007986)	ENSNSUG00000007973	SGK1 (ENSNSUG00000007972)	SLC2A12 (ENSNSUG00000007970)	TBPL1 (ENSNSUG00000007969)	TCF21 (ENSNSUG00000007968)
Eastern brown snake	MODERN SPECIES	28	ABRACL (ENSPTXG00000003671)	REPS1 (ENSPTXG00000003665)	ECT2L (ENSPTXG00000003660)	CCDC28A (ENSPTXG00000003658)	NHSL1 (ENSPTXG00000003654)	HEBP2 (ENSPTXG00000003652)	ARFGEF3 (ENSPTXG00000003641)	PERP (ENSPTXG00000003638)	ENSPTXG00000003637	TNFAIP3 (ENSPTXG00000003634)	OLIG3 (ENSPTXG00000003632)	ENSPTXG00000003631	SLC35D3 (ENSPTXG00000003629)	ENSPTXG00000003626	MAP3K5 (ENSPTXG00000003600)	MAP7 (ENSPTXG00000009806) ##22	ENSPTXG00000009805	BCLAF1 (ENSPTXG00000009804) ##23	PDE7B (ENSPTXG00000009803)	AHI1 (ENSPTXG00000009802)	ENSPTXG00000009801	ENSPTXG00000009800	HBS1L (ENSPTXG00000009799)	ALDH8A1 (ENSPTXG00000009798)	ENSPTXG00000009797	SGK1 (ENSPTXG00000009796)	SLC2A12 (ENSPTXG00000009795)	TBPL1 (ENSPTXG00000009794)	TCF21 (ENSPTXG00000009793)	EYA4 (ENSPTXG00000009792)	RPS12 (ENSPTXG00000009788)
Blue-lipped sea krait	MODERN SPECIES	862															MAP3K5 (ENSLLTG00000002349)	MAP7 (ENSLLTG00000002292) ##22	ENSLLTG00000002276	BCLAF1 (ENSLLTG00000002254) ##23	MTFR2 (ENSLLTG00000002244)	PDE7B (ENSLLTG00000002238)
Indian cobra	MODERN SPECIES		REPS1 (ENSNNAG00000001715)	ECT2L (ENSNNAG00000001757)	CCDC28A (ENSNNAG00000001770)	NHSL1 (ENSNNAG00000001792)	HEBP2 (ENSNNAG00000001818)	ARFGEF3 (ENSNNAG00000001883)	PERP (ENSNNAG00000002038)	ENSNNAG00000002044	TNFAIP3 (ENSNNAG00000002057)	OLIG3 (ENSNNAG00000002072)	ENSNNAG00000002084	IL20RA (ENSNNAG00000002098)	SLC35D3 (ENSNNAG00000002112)	PEX7 (ENSNNAG00000002125)	MAP3K5 (ENSNNAG00000002163)	MAP7 (ENSNNAG00000002218) ##22	ENSNNAG00000000006	BCLAF1 (ENSNNAG00000000012) ##23	MTFR2 (ENSNNAG00000000015)	PDE7B (ENSNNAG00000000019)	ENSNNAG00000000023	AHI1 (ENSNNAG00000000029)	MYB (ENSNNAG00000000035)	HBS1L (ENSNNAG00000000042)	ALDH8A1 (ENSNNAG00000000044)	SGK1 (ENSNNAG00000000046)	SLC2A12 (ENSNNAG00000000051)	TBPL1 (ENSNNAG00000000054)	TCF21 (ENSNNAG00000000058)	EYA4 (ENSNNAG00000000061)	RPS12 (ENSNNAG00000000063)
Lizard	MODERN SPECIES	814	ENSACAG00000037586	NHSL1 (ENSACAG00000016804)	HEBP2 (ENSACAG00000016816)	ARFGEF3 (ENSACAG00000016819)	ENSACAG00000039582	ENSACAG00000038729	ENSACAG00000016852	ENSACAG00000044884	ENSACAG00000035269	TNFAIP3 (ENSACAG00000016855)	ENSACAG00000028387	ENSACAG00000028065	SLC35D3 (ENSACAG00000016914)	PEX7 (ENSACAG00000016918)	MAP3K5 (ENSACAG00000016923)	MAP7 (ENSACAG00000016994) ##22	BCLAF1 (ENSACAG00000017011) ##23	ENSACAG00000034620	ENSACAG00000017033	PDE7B (ENSACAG00000017035)	ENSACAG00000035045	ENSACAG00000042528	AHI1 (ENSACAG00000009806)	MYB (ENSACAG00000009861)	ENSACAG00000040508	HBS1L (ENSACAG00000010120)	ALDH8A1 (ENSACAG00000010204)	SGK1 (ENSACAG00000010226)	SLC2A12 (ENSACAG00000010313)	TCF21 (ENSACAG00000010325)	EYA4 (ENSACAG00000010346)
tuatara	MODERN SPECIES	673								ENSSPUG00000011807	ENSSPUG00000011820	TNFAIP3 (ENSSPUG00000011879)	OLIG3 (ENSSPUG00000011903)	ENSSPUG00000011920	SLC35D3 (ENSSPUG00000011941)	ENSSPUG00000011953	MAP3K5 (ENSSPUG00000011975)	MAP7 (ENSSPUG00000012018) ##22	ENSSPUG00000012042	BCLAF1 (ENSSPUG00000012092) ##23	PDE7B (ENSSPUG00000012259)	ENSSPUG00000012279	ENSSPUG00000012290	ENSSPUG00000012310	MYB (ENSSPUG00000012329)	HBS1L (ENSSPUG00000012389)	ALDH8A1 (ENSSPUG00000012409)
Mammalia	ANCESTRAL SPECIES	2	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00950000183163.a.b ##23	ENSGT00940000164948	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00650000094590	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.v
Theria	ANCESTRAL SPECIES	4	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00950000183163.a.b ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00650000094590	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.v	ENSGT00940000156674
Marsupialia	ANCESTRAL SPECIES	2	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00950000183163.a.b ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00650000094590	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.v	ENSGT00390000018318.u.b.b
Marsupialia_b	ANCESTRAL SPECIES	1	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00950000183163.a.b ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.v	ENSGT00940000156674	ENSGT00390000013823.b.c.b
Diprotodontia	ANCESTRAL SPECIES	15	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00950000183163.a.b ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a	ENSGT00390000018318.u.b.b	ENSGT00940000156674
Diprotodontia_a	ANCESTRAL SPECIES	23										ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00950000183163.a.b ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00510000046986.b	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a	ENSGT00940000156674
koala	MODERN SPECIES	27										ENSPCIG00000027248	ENSPCIG00000027249	IL20RA (ENSPCIG00000027252)	SLC35D3 (ENSPCIG00000027254)	PEX7 (ENSPCIG00000027255)	MAP3K5 (ENSPCIG00000028208)	MAP7 (ENSPCIG00000014046) ##22	BCLAF1 (ENSPCIG00000017609) ##23	ENSPCIG00000026708	PDE7B (ENSPCIG00000026715)	ENSPCIG00000001356	MYB (ENSPCIG00000023931)	HBS1L (ENSPCIG00000013363)	ALDH8A1 (ENSPCIG00000013617)	ENSPCIG00000006039	SGK1 (ENSPCIG00000034420)	SLC2A12 (ENSPCIG00000008803)	TBPL1 (ENSPCIG00000008805)	TCF21 (ENSPCIG00000008807)	EYA4 (ENSPCIG00000028725)	RPS12 (ENSPCIG00000028027)	SLC18B1 (ENSPCIG00000028026)
Common wonbat	MODERN SPECIES	577	CCDC28A (ENSVURG00010003218)	NHSL1 (ENSVURG00010003237)	HEBP2 (ENSVURG00010003262)	SMIM28 (ENSVURG00010003271)	ARFGEF3 (ENSVURG00010003304)	PERP (ENSVURG00010003438)	ENSVURG00010003453	OLIG3 (ENSVURG00010003481)	ENSVURG00010003486	ENSVURG00010003490	ENSVURG00010003502	IL20RA (ENSVURG00010003508)	SLC35D3 (ENSVURG00010003517)	PEX7 (ENSVURG00010003525)	MAP3K5 (ENSVURG00010003540)	MAP7 (ENSVURG00010003588) ##22	BCLAF1 (ENSVURG00010003667) ##23	ENSVURG00010003889	PDE7B (ENSVURG00010003925)	AHI1 (ENSVURG00010003974)	MYB (ENSVURG00010004030)	HBS1L (ENSVURG00010004148)	ALDH8A1 (ENSVURG00010004171)	ENSVURG00010004180	SGK1 (ENSVURG00010004201)	SLC2A12 (ENSVURG00010004295)	TBPL1 (ENSVURG00010004299)	TCF21 (ENSVURG00010004318)	ENSVURG00010004337	EYA4 (ENSVURG00010004394)	ENSVURG00010005354
Wallaby	MODERN SPECIES	4145																MAP7 (ENSMEUG00000003988) ##22
Tasmanian devil	MODERN SPECIES	3	ECT2L (ENSSHAG00000008064)	CCDC28A (ENSSHAG00000022209)	NHSL1 (ENSSHAG00000001393)	HEBP2 (ENSSHAG00000000026)	SMIM28 (ENSSHAG00000031958)	ARFGEF3 (ENSSHAG00000012424)	PERP (ENSSHAG00000024598)	TNFAIP3 (ENSSHAG00000010469)	OLIG3 (ENSSHAG00000007183)	ENSSHAG00000023943	ENSSHAG00000024867	IL20RA (ENSSHAG00000024345)	SLC35D3 (ENSSHAG00000014435)	PEX7 (ENSSHAG00000014094)	MAP3K5 (ENSSHAG00000012760)	MAP7 (ENSSHAG00000011432) ##22	BCLAF1 (ENSSHAG00000010721) ##23	MTFR2 (ENSSHAG00000010457)	PDE7B (ENSSHAG00000009844)	ENSSHAG00000015549	ENSSHAG00000029987	MYB (ENSSHAG00000014728)	HBS1L (ENSSHAG00000013509)	ALDH8A1 (ENSSHAG00000013316)	SGK1 (ENSSHAG00000008160)	SLC2A12 (ENSSHAG00000006070)	TBPL1 (ENSSHAG00000005937)	TCF21 (ENSSHAG00000004870)	EYA4 (ENSSHAG00000012982)	ENSSHAG00000008905	SLC18B1 (ENSSHAG00000008484)
Opossum	MODERN SPECIES	1	HEBP2 (ENSMODG00000017398)	SMIM28 (ENSMODG00000038389)	ARFGEF3 (ENSMODG00000017409)	ENSMODG00000023304	PERP (ENSMODG00000017414)	TNFAIP3 (ENSMODG00000017417)	ENSMODG00000039603	ENSMODG00000000021	ENSMODG00000017421	ENSMODG00000017426	IL20RA (ENSMODG00000017429)	SLC35D3 (ENSMODG00000017431)	PEX7 (ENSMODG00000017434)	MAP3K5 (ENSMODG00000017436)	ENSMODG00000050331	MAP7 (ENSMODG00000049358) ##22	ENSMODG00000017447 ##23	ENSMODG00000017453	PDE7B (ENSMODG00000017463)	AHI1 (ENSMODG00000017476)	MYB (ENSMODG00000017488)	ENSMODG00000038655	ENSMODG00000017499	ALDH8A1 (ENSMODG00000017504)	SGK1 (ENSMODG00000017509)	SLC2A12 (ENSMODG00000017512)	TBPL1 (ENSMODG00000017515)	TCF21 (ENSMODG00000017516)	RPS12 (ENSMODG00000017520)	SLC18B1 (ENSMODG00000017522)	ENSMODG00000023115
Eutheria	ANCESTRAL SPECIES	9	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00950000183163.a.b ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00650000094590	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.v	ENSGT00940000156674
Atlantogenata	ANCESTRAL SPECIES	51	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00950000183163.a.b ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.v	ENSGT00940000156674	ENSGT00390000013823.b.c.a.b
Afrotheria	ANCESTRAL SPECIES	55	ENSGT00940000158749	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00950000183163.a.b ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.b.b	ENSGT00940000156674	ENSGT00390000013823.b.c.b
Afrotheria_a	ANCESTRAL SPECIES	51	ENSGT00940000158749	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00950000183163.a.b ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.b.b	ENSGT00940000156674	ENSGT00390000013823.b.c.b
Elephant	MODERN SPECIES	1	CCDC28A (ENSLAFG00000023017)	ENSLAFG00000032149	NHSL1 (ENSLAFG00000022496)	HEBP2 (ENSLAFG00000013501)	ARFGEF3 (ENSLAFG00000001882)	PERP (ENSLAFG00000000047)	TNFAIP3 (ENSLAFG00000011428)	OLIG3 (ENSLAFG00000005655)	IFNGR1 (ENSLAFG00000029501)	IL22RA2 (ENSLAFG00000001324)	ENSLAFG00000007603	SLC35D3 (ENSLAFG00000016308)	PEX7 (ENSLAFG00000007598)	ENSLAFG00000032335	MAP3K5 (ENSLAFG00000000588)	MAP7 (ENSLAFG00000004444) ##22	ENSLAFG00000032469	BCLAF1 (ENSLAFG00000015982) ##23	MTFR2 (ENSLAFG00000031342)	PDE7B (ENSLAFG00000018738)	AHI1 (ENSLAFG00000017402)	MYB (ENSLAFG00000018350)	HBS1L (ENSLAFG00000007835)	ALDH8A1 (ENSLAFG00000007832)	SGK1 (ENSLAFG00000012698)	SLC2A12 (ENSLAFG00000014066)	TBPL1 (ENSLAFG00000014064)	TCF21 (ENSLAFG00000009507)	EYA4 (ENSLAFG00000012196)	RPS12 (ENSLAFG00000007933)	SLC18B1 (ENSLAFG00000001053)
Hyrax	MODERN SPECIES	2546																MAP7 (ENSPCAG00000002533) ##22
Tenrec	MODERN SPECIES	3122																MAP7 (ENSETEG00000004831) ##22
Xenarthra	ANCESTRAL SPECIES	439										ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00950000183163.a.b ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509
Armadillo	MODERN SPECIES	2554							OLIG3 (ENSDNOG00000042405)	ENSDNOG00000033108	ENSDNOG00000047511	ENSDNOG00000049724	IL22RA2 (ENSDNOG00000035934)	IL20RA (ENSDNOG00000034429)	SLC35D3 (ENSDNOG00000036032)	PEX7 (ENSDNOG00000039698)	MAP3K5 (ENSDNOG00000019294)	MAP7 (ENSDNOG00000013217) ##22	BCLAF1 (ENSDNOG00000019473) ##23	ENSDNOG00000032576	PDE7B (ENSDNOG00000041927)	AHI1 (ENSDNOG00000003425)
Sloth	MODERN SPECIES	2821																ENSCHOG00000005936 ##22
Boreoeutheria	ANCESTRAL SPECIES	7	ENSGT00990000204448	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT01030000236221	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00950000183163.a.b ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00650000094590	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a	ENSGT00390000018318.u.b.b
Laurasiatheria	ANCESTRAL SPECIES	7	ENSGT00990000204448	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT01030000236221	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00950000183163.a.b ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00650000094590	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a	ENSGT00940000156674
Eulipotyphla	ANCESTRAL SPECIES	1445															ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22
Hedgehog	MODERN SPECIES	3236															MAP3K5 (ENSEEUG00000012993)	MAP7 (ENSEEUG00000012762) ##22
Common shrew	MODERN SPECIES	1457															BCLAF1 (ENSSARG00000010591) ##23	MAP7 (ENSSARG00000010516) ##22
Laurasiatheria_a	ANCESTRAL SPECIES	7	ENSGT00990000204448	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT01030000236221	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00950000183163.a.b ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00650000094590	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a	ENSGT00940000156674
Artiodactyla	ANCESTRAL SPECIES	19	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00950000183163.a.b ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00650000094590	ENSGT00940000156274	ENSGT00940000156799	ENSGT00950000182925.D.a.a.b.a.k.b	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a
Suina	ANCESTRAL SPECIES	18	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT00540000070023.c.b.a.a.b	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00950000183163.a.b ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00650000094590	ENSGT00940000156274	ENSGT00940000156799	ENSGT00950000182925.D.a.a.b.a.k.b	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a
Pig	MODERN SPECIES		NHSL1 (ENSSSCG00000004149)	ENSSSCG00000004150	SMIM28 (ENSSSCG00000048346)	ENSSSCG00000004151	ARFGEF3 (ENSSSCG00000022968)	PERP (ENSSSCG00000038420)	TNFAIP3 (ENSSSCG00000004154)	OLIG3 (ENSSSCG00000004155)	IFNGR1 (ENSSSCG00000004156)	IL22RA2 (ENSSSCG00000004158)	IL20RA (ENSSSCG00000004157)	SLC35D3 (ENSSSCG00000004159)	PEX7 (ENSSSCG00000004160)	MAP3K5 (ENSSSCG00000026041)	ENSSSCG00000046709	MAP7 (ENSSSCG00000039049) ##22	BCLAF1 (ENSSSCG00000004163) ##23	MTFR2 (ENSSSCG00000004164)	PDE7B (ENSSSCG00000004165)	AHI1 (ENSSSCG00000004166)	MYB (ENSSSCG00000004167)	ENSSSCG00000060550	HBS1L (ENSSSCG00000004169)	ALDH8A1 (ENSSSCG00000028115)	ENSSSCG00000004170	SGK1 (ENSSSCG00000021443)	SLC2A12 (ENSSSCG00000004172)	TBPL1 (ENSSSCG00000022387)	TCF21 (ENSSSCG00000033258)	EYA4 (ENSSSCG00000034139)	RPS12 (ENSSSCG00000004177)
Chacoan peccary	MODERN SPECIES	58	CCDC28A (ENSCWAG00000002001)	NHSL1 (ENSCWAG00000002036)	HEBP2 (ENSCWAG00000002090)	SMIM28 (ENSCWAG00000002100)	ENSCWAG00000002119	ARFGEF3 (ENSCWAG00000002143)	PERP (ENSCWAG00000002201)	TNFAIP3 (ENSCWAG00000002217)	OLIG3 (ENSCWAG00000002236)	IFNGR1 (ENSCWAG00000002246)	IL22RA2 (ENSCWAG00000002263)	IL20RA (ENSCWAG00000002295)	SLC35D3 (ENSCWAG00000002337)	PEX7 (ENSCWAG00000002350)	MAP3K5 (ENSCWAG00000002374)	MAP7 (ENSCWAG00000002498) ##22	BCLAF1 (ENSCWAG00000002874) ##23	MTFR2 (ENSCWAG00000002979)	PDE7B (ENSCWAG00000003019)	AHI1 (ENSCWAG00000003087)	MYB (ENSCWAG00000003233)	HBS1L (ENSCWAG00000005215)	ALDH8A1 (ENSCWAG00000005408)	ENSCWAG00000005520	SGK1 (ENSCWAG00000005577)	SLC2A12 (ENSCWAG00000005808)	TBPL1 (ENSCWAG00000005859)	TCF21 (ENSCWAG00000005887)	EYA4 (ENSCWAG00000006003)	ENSCWAG00000008596	SLC18B1 (ENSCWAG00000008668)
Artiodactyla_a	ANCESTRAL SPECIES	21	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00950000183163.a.b ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00650000094590	ENSGT00940000156274	ENSGT00940000156799	ENSGT00950000182925.D.a.a.b.a.k.b	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a
Camelidae	ANCESTRAL SPECIES	37	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT01030000236221	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00950000183163.a.b ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00950000182925.D.a.a.b.a.k.b	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.v	ENSGT00940000156674
Alpaca	MODERN SPECIES	558											ENSVPAG00000003936	IL20RA (ENSVPAG00000003935)	SLC35D3 (ENSVPAG00000003934)	PEX7 (ENSVPAG00000003933)	MAP3K5 (ENSVPAG00000003929)	MAP7 (ENSVPAG00000003926) ##22	BCLAF1 (ENSVPAG00000003924) ##23	MTFR2 (ENSVPAG00000003922)	PDE7B (ENSVPAG00000003920)	AHI1 (ENSVPAG00000003915)
Arabian camel	MODERN SPECIES	34	ECT2L (ENSCDRG00005013645)	CCDC28A (ENSCDRG00005013874)	NHSL1 (ENSCDRG00005013989)	HEBP2 (ENSCDRG00005014162)	SMIM28 (ENSCDRG00005014197)	ARFGEF3 (ENSCDRG00005014224)	PERP (ENSCDRG00005014505)	TNFAIP3 (ENSCDRG00005014565)	OLIG3 (ENSCDRG00005014653)	IFNGR1 (ENSCDRG00005014662)	IL22RA2 (ENSCDRG00005014705)	IL20RA (ENSCDRG00005014767)	SLC35D3 (ENSCDRG00005015088)	PEX7 (ENSCDRG00005015169)	MAP3K5 (ENSCDRG00005015332)	MAP7 (ENSCDRG00005015545) ##22	BCLAF1 (ENSCDRG00005017775) ##23	MTFR2 (ENSCDRG00005018327)	PDE7B (ENSCDRG00005018377)	AHI1 (ENSCDRG00005018511)	MYB (ENSCDRG00005018759)	HBS1L (ENSCDRG00005021331)	ALDH8A1 (ENSCDRG00005021478)	ENSCDRG00005021481	SGK1 (ENSCDRG00005021488)	SLC2A12 (ENSCDRG00005021503)	TBPL1 (ENSCDRG00005021546)	TCF21 (ENSCDRG00005021553)	EYA4 (ENSCDRG00005021570)	ENSCDRG00005021622	ENSCDRG00005021625
Artiodactyla_b	ANCESTRAL SPECIES	18	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00950000183163.a.b ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00650000094590	ENSGT00940000156274	ENSGT00940000156799	ENSGT00950000182925.D.a.a.b.a.k.b	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a
Cetacea	ANCESTRAL SPECIES	18	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00950000183163.a.b ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00650000094590	ENSGT00940000156274	ENSGT00940000156799	ENSGT00950000182925.D.a.a.b.a.k.b	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a
Odontoceti	ANCESTRAL SPECIES	18	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00950000183163.a.b ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00650000094590	ENSGT00940000156274	ENSGT00940000156799	ENSGT00950000182925.D.a.a.b.a.k.b	ENSGT00940000155726.fb.b	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a
Odontoceti_a	ANCESTRAL SPECIES	16	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00950000183163.a.b ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00650000094590	ENSGT00940000156274	ENSGT00940000156799	ENSGT00950000182925.D.a.a.b.a.k.b	ENSGT00940000155726.fb.b	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a
Odontoceti_b	ANCESTRAL SPECIES	18	ENSGT00950000185403	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00950000183163.a.b ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00650000094590	ENSGT00940000156274	ENSGT00940000156799	ENSGT00950000182925.D.a.a.b.a.k.b	ENSGT00940000155726.fb.b	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a
Monodontidae	ANCESTRAL SPECIES	18	ENSGT00950000185403	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00950000183163.a.b ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00650000094590	ENSGT00940000156274	ENSGT00940000156799	ENSGT00950000182925.D.a.a.b.a.k.b	ENSGT00940000155726.fb.b	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a
Narwhal	MODERN SPECIES	301	REPS1 (ENSMMNG00015004765)	CCDC28A (ENSMMNG00015004752)	NHSL1 (ENSMMNG00015004748)	HEBP2 (ENSMMNG00015004744)	SMIM28 (ENSMMNG00015004741)	ARFGEF3 (ENSMMNG00015004736)	PERP (ENSMMNG00015004729)	TNFAIP3 (ENSMMNG00015004725)	OLIG3 (ENSMMNG00015004722)	IFNGR1 (ENSMMNG00015004717)	IL22RA2 (ENSMMNG00015004714)	IL20RA (ENSMMNG00015004702)	SLC35D3 (ENSMMNG00015004697)	PEX7 (ENSMMNG00015004689)	MAP3K5 (ENSMMNG00015004650)	MAP7 (ENSMMNG00015004576) ##22	BCLAF1 (ENSMMNG00015004416) ##23	MTFR2 (ENSMMNG00015004365)	PDE7B (ENSMMNG00015004337)	ENSMMNG00015004316	AHI1 (ENSMMNG00015004289)	MYB (ENSMMNG00015003868)	HBS1L (ENSMMNG00015003506)	ALDH8A1 (ENSMMNG00015003422)	ENSMMNG00015003395	SGK1 (ENSMMNG00015003296)	SLC2A12 (ENSMMNG00015003231)	TBPL1 (ENSMMNG00015003201)	TCF21 (ENSMMNG00015003187)	EYA4 (ENSMMNG00015002681)	ENSMMNG00015002434
Beluga whale	MODERN SPECIES	80	ENSDLEG00000018944	REPS1 (ENSDLEG00000018915)	CCDC28A (ENSDLEG00000018902)	NHSL1 (ENSDLEG00000018878)	HEBP2 (ENSDLEG00000018869)	ARFGEF3 (ENSDLEG00000018824)	PERP (ENSDLEG00000018815)	TNFAIP3 (ENSDLEG00000018805)	OLIG3 (ENSDLEG00000018800)	IFNGR1 (ENSDLEG00000018795)	IL22RA2 (ENSDLEG00000018776)	IL20RA (ENSDLEG00000018765)	SLC35D3 (ENSDLEG00000018760)	PEX7 (ENSDLEG00000018737)	MAP3K5 (ENSDLEG00000018645)	MAP7 (ENSDLEG00000018586) ##22	BCLAF1 (ENSDLEG00000018552) ##23	MTFR2 (ENSDLEG00000018530)	PDE7B (ENSDLEG00000018501)	ENSDLEG00000018489	AHI1 (ENSDLEG00000018476)	MYB (ENSDLEG00000017828)	HBS1L (ENSDLEG00000017719)	ENSDLEG00000017705	ALDH8A1 (ENSDLEG00000017684)	ENSDLEG00000017675	SGK1 (ENSDLEG00000017395)	SLC2A12 (ENSDLEG00000017341)	TBPL1 (ENSDLEG00000017321)	TCF21 (ENSDLEG00000017308)	EYA4 (ENSDLEG00000017258)
Vaquita	MODERN SPECIES	3	ENSPSNG00000016870	ENSPSNG00000016891	NHSL1 (ENSPSNG00000016929)	HEBP2 (ENSPSNG00000017128)	SMIM28 (ENSPSNG00000017175)	ARFGEF3 (ENSPSNG00000017246)	PERP (ENSPSNG00000017580)	TNFAIP3 (ENSPSNG00000017627)	OLIG3 (ENSPSNG00000017695)	IFNGR1 (ENSPSNG00000017711)	IL22RA2 (ENSPSNG00000017736)	IL20RA (ENSPSNG00000017854)	SLC35D3 (ENSPSNG00000018001)	PEX7 (ENSPSNG00000018022)	MAP3K5 (ENSPSNG00000018088)	MAP7 (ENSPSNG00000018187) ##22	BCLAF1 (ENSPSNG00000018438) ##23	MTFR2 (ENSPSNG00000018668)	PDE7B (ENSPSNG00000018778)	AHI1 (ENSPSNG00000018997)	ENSPSNG00000019108	MYB (ENSPSNG00000019358)	HBS1L (ENSPSNG00000020502)	ALDH8A1 (ENSPSNG00000020689)	ENSPSNG00000020833	SGK1 (ENSPSNG00000020913)	SLC2A12 (ENSPSNG00000021095)	TBPL1 (ENSPSNG00000021116)	TCF21 (ENSPSNG00000021150)	EYA4 (ENSPSNG00000021358)	ENSPSNG00000021786
Dolphin	MODERN SPECIES	1876												IL20RA (ENSTTRG00000002552)	SLC35D3 (ENSTTRG00000002550)	PEX7 (ENSTTRG00000002549)	MAP3K5 (ENSTTRG00000002547)	MAP7 (ENSTTRG00000002544) ##22	BCLAF1 (ENSTTRG00000002543) ##23	MTFR2 (ENSTTRG00000002539)	PDE7B (ENSTTRG00000002534)
Sperm whale	MODERN SPECIES	1	NHSL1 (ENSPCTG00005002424)	HEBP2 (ENSPCTG00005002499)	SMIM28 (ENSPCTG00005002515)	ARFGEF3 (ENSPCTG00005002543)	PERP (ENSPCTG00005002611)	TNFAIP3 (ENSPCTG00005002628)	ENSPCTG00005002647	OLIG3 (ENSPCTG00005002654)	ENSPCTG00005002660	IFNGR1 (ENSPCTG00005002669)	IL22RA2 (ENSPCTG00005002687)	IL20RA (ENSPCTG00005002725)	SLC35D3 (ENSPCTG00005002777)	PEX7 (ENSPCTG00005002794)	MAP3K5 (ENSPCTG00005002829)	MAP7 (ENSPCTG00005002901) ##22	BCLAF1 (ENSPCTG00005003186) ##23	MTFR2 (ENSPCTG00005003247)	PDE7B (ENSPCTG00005003278)	AHI1 (ENSPCTG00005003350)	MYB (ENSPCTG00005003582)	HBS1L (ENSPCTG00005004840)	ALDH8A1 (ENSPCTG00005005236)	ENSPCTG00005005368	SGK1 (ENSPCTG00005005434)	ENSPCTG00005005970	SLC2A12 (ENSPCTG00005005980)	TBPL1 (ENSPCTG00005006014)	TCF21 (ENSPCTG00005006049)	EYA4 (ENSPCTG00005006207)	ENSPCTG00005007873
Blue whale	MODERN SPECIES	3	CCDC28A (ENSBMSG00010011382)	NHSL1 (ENSBMSG00010011403)	HEBP2 (ENSBMSG00010011427)	SMIM28 (ENSBMSG00010011435)	ARFGEF3 (ENSBMSG00010011454)	PERP (ENSBMSG00010012999)	ENSBMSG00010013004	TNFAIP3 (ENSBMSG00010013017)	OLIG3 (ENSBMSG00010013026)	IFNGR1 (ENSBMSG00010013033)	IL22RA2 (ENSBMSG00010013041)	IL20RA (ENSBMSG00010013064)	SLC35D3 (ENSBMSG00010013086)	PEX7 (ENSBMSG00010013106)	MAP3K5 (ENSBMSG00010013140)	MAP7 (ENSBMSG00010013240) ##22	BCLAF1 (ENSBMSG00010013436) ##23	MTFR2 (ENSBMSG00010013499)	PDE7B (ENSBMSG00010013521)	AHI1 (ENSBMSG00010013573)	MYB (ENSBMSG00010013716)	HBS1L (ENSBMSG00010015846)	ALDH8A1 (ENSBMSG00010016072)	ENSBMSG00010016201	SGK1 (ENSBMSG00010016242)	SLC2A12 (ENSBMSG00010016353)	TBPL1 (ENSBMSG00010016385)	TCF21 (ENSBMSG00010016420)	ENSBMSG00010016433	EYA4 (ENSBMSG00010016581)	RPS12 (ENSBMSG00010019087)
Pecora	ANCESTRAL SPECIES	19	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00950000183163.a.b ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00960000191152	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00950000182925.D.a.a.b.a.k.b	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a
Percora_a	ANCESTRAL SPECIES	21	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00950000183163.a.b ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00960000191152	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00950000182925.D.a.a.b.a.k.b	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a
Bovidae	ANCESTRAL SPECIES	21	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00950000183163.a.b ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00960000191152	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00950000182925.D.a.a.b.a.k.b	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a
Bovinae	ANCESTRAL SPECIES	35	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT00530000064150	ENSGT00530000063484.a.k.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00950000183163.a.b ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00960000191152	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00950000182925.D.a.a.b.a.k.b	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a
Bos	ANCESTRAL SPECIES	19	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT00530000064150	ENSGT00530000063484.a.l	ENSGT00530000063484.a.k.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00950000183163.a.b ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00950000182925.D.a.a.b.a.k.b	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a	ENSGT00940000156674
Bos_a	ANCESTRAL SPECIES	18	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT00530000064150	ENSGT00530000063484.a.k.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00950000183163.a.b ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00950000182925.D.a.a.b.a.k.b	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a	ENSGT00940000156674
Domestic yak	MODERN SPECIES	1	NHSL1 (ENSBGRG00000013172)	HEBP2 (ENSBGRG00000013355)	SMIM28 (ENSBGRG00000013484)	ARFGEF3 (ENSBGRG00000013577)	ENSBGRG00000014011	ENSBGRG00000014065	TNFAIP3 (ENSBGRG00000014104)	OLIG3 (ENSBGRG00000014179)	ENSBGRG00000014200	IFNGR1 (ENSBGRG00000014225)	IL22RA2 (ENSBGRG00000014306)	IL20RA (ENSBGRG00000014447)	SLC35D3 (ENSBGRG00000014577)	PEX7 (ENSBGRG00000014624)	MAP3K5 (ENSBGRG00000014827)	MAP7 (ENSBGRG00000015070) ##22	BCLAF1 (ENSBGRG00000015909) ##23	MTFR2 (ENSBGRG00000016366)	PDE7B (ENSBGRG00000016432)	ENSBGRG00000016837	ENSBGRG00000016866	AHI1 (ENSBGRG00000016896)	ENSBGRG00000017011	MYB (ENSBGRG00000017062)	HBS1L (ENSBGRG00000017504)	ALDH8A1 (ENSBGRG00000018084)	ENSBGRG00000018439	ENSBGRG00000018453	SGK1 (ENSBGRG00000018550)	SLC2A12 (ENSBGRG00000018914)	TBPL1 (ENSBGRG00000019080)
Wild yak	MODERN SPECIES	1062										IFNGR1 (ENSBMUG00000012052)	IL22RA2 (ENSBMUG00000012067)	IL20RA (ENSBMUG00000012085)	SLC35D3 (ENSBMUG00000012102)	PEX7 (ENSBMUG00000012113)	MAP3K5 (ENSBMUG00000012132)	MAP7 (ENSBMUG00000012203) ##22	BCLAF1 (ENSBMUG00000012296) ##23	MTFR2 (ENSBMUG00000012345)	PDE7B (ENSBMUG00000012382)	AHI1 (ENSBMUG00000012435)	MYB (ENSBMUG00000012863)	HBS1L (ENSBMUG00000013294)	ALDH8A1 (ENSBMUG00000013397)	ENSBMUG00000013415
Bos_b	ANCESTRAL SPECIES	24	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT00530000064150	ENSGT00530000063484.a.l	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00950000183163.a.b ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00390000008432.l	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00950000185181	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.v
Cow	MODERN SPECIES	28	REPS1 (ENSBTAG00000012299)	ECT2L (ENSBTAG00000027312)	CCDC28A (ENSBTAG00000015516)	NHSL1 (ENSBTAG00000000245)	HEBP2 (ENSBTAG00000000243)	ARFGEF3 (ENSBTAG00000017370)	PERP (ENSBTAG00000020097)	TNFAIP3 (ENSBTAG00000000436)	OLIG3 (ENSBTAG00000008749)	IFNGR1 (ENSBTAG00000012544)	IL22RA2 (ENSBTAG00000017000)	IL20RA (ENSBTAG00000015638)	SLC35D3 (ENSBTAG00000016793)	PEX7 (ENSBTAG00000016791)	MAP3K5 (ENSBTAG00000009065)	MAP7 (ENSBTAG00000001598) ##22	BCLAF1 (ENSBTAG00000007802) ##23	MTFR2 (ENSBTAG00000007799)	PDE7B (ENSBTAG00000015888)	ENSBTAG00000046495	AHI1 (ENSBTAG00000017958)	MYB (ENSBTAG00000012074)	HBS1L (ENSBTAG00000020174)	ALDH8A1 (ENSBTAG00000007975)	ENSBTAG00000050964	SGK1 (ENSBTAG00000004269)	SLC2A12 (ENSBTAG00000019002)	TBPL1 (ENSBTAG00000035370)	TCF21 (ENSBTAG00000021827)	EYA4 (ENSBTAG00000021970)	RPS12 (ENSBTAG00000001360)
Hybrid Bos Indicus	MODERN SPECIES	28	ECT2L (ENSBIXG00005026125)	CCDC28A (ENSBIXG00005026189)	NHSL1 (ENSBIXG00005004480)	ENSBIXG00005004489	SMIM28 (ENSBIXG00005004498)	ARFGEF3 (ENSBIXG00005026451)	ENSBIXG00005026496	TNFAIP3 (ENSBIXG00005004535)	OLIG3 (ENSBIXG00005004539)	IFNGR1 (ENSBIXG00005026601)	IL22RA2 (ENSBIXG00005026622)	IL20RA (ENSBIXG00005026689)	SLC35D3 (ENSBIXG00005026714)	PEX7 (ENSBIXG00005026748)	MAP3K5 (ENSBIXG00005026792)	MAP7 (ENSBIXG00005004633) ##22	BCLAF1 (ENSBIXG00005027187) ##23	MTFR2 (ENSBIXG00005027208)	ENSBIXG00005007583	PDE7B (ENSBIXG00005005610)	ENSBIXG00005027379	AHI1 (ENSBIXG00005027513)	MYB (ENSBIXG00005004779)	HBS1L (ENSBIXG00005028064)	ALDH8A1 (ENSBIXG00005028188)	ENSBIXG00005028211	SGK1 (ENSBIXG00005028436)	SLC2A12 (ENSBIXG00005004915)	TBPL1 (ENSBIXG00005004933)	ENSBIXG00005002400	EYA4 (ENSBIXG00005002280)
American bison	MODERN SPECIES	3117	ECT2L (ENSBBBG00000011653)	CCDC28A (ENSBBBG00000002135)	NHSL1 (ENSBBBG00000011588)	HEBP2 (ENSBBBG00000002116)	SMIM28 (ENSBBBG00000011538)	ARFGEF3 (ENSBBBG00000011534)	ENSBBBG00000011504	TNFAIP3 (ENSBBBG00000011487)	OLIG3 (ENSBBBG00000002099)	IFNGR1 (ENSBBBG00000007970)	IL22RA2 (ENSBBBG00000002090)	IL20RA (ENSBBBG00000011411)	SLC35D3 (ENSBBBG00000006758)	PEX7 (ENSBBBG00000025472)	MAP3K5 (ENSBBBG00000025426)	MAP7 (ENSBBBG00000025344) ##22	BCLAF1 (ENSBBBG00000025127) ##23	MTFR2 (ENSBBBG00000007818)	PDE7B (ENSBBBG00000006552)	ENSBBBG00000024765	ENSBBBG00000006505	MYB (ENSBBBG00000000167)	HBS1L (ENSBBBG00000024102)	ALDH8A1 (ENSBBBG00000000303)	ENSBBBG00000023839	SGK1 (ENSBBBG00000023807)	SLC2A12 (ENSBBBG00000023678)	TBPL1 (ENSBBBG00000023665)	TCF21 (ENSBBBG00000023645)	EYA4 (ENSBBBG00000023613)	ENSBBBG00000000395
Caprinae	ANCESTRAL SPECIES		ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00950000183163.a.b ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00950000182925.D.a.a.b.a.k.b	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.b.a.b.a.b	ENSGT00940000156674
Goat	MODERN SPECIES	28	REPS1 (ENSCHIG00000022601)	ECT2L (ENSCHIG00000012266)	CCDC28A (ENSCHIG00000018840)	NHSL1 (ENSCHIG00000016534)	HEBP2 (ENSCHIG00000023213)	ARFGEF3 (ENSCHIG00000026696)	PERP (ENSCHIG00000015047)	TNFAIP3 (ENSCHIG00000021461)	OLIG3 (ENSCHIG00000010551)	IFNGR1 (ENSCHIG00000013778)	IL22RA2 (ENSCHIG00000026489)	IL20RA (ENSCHIG00000016224)	SLC35D3 (ENSCHIG00000008530)	PEX7 (ENSCHIG00000011508)	MAP3K5 (ENSCHIG00000024066)	MAP7 (ENSCHIG00000008356) ##22	BCLAF1 (ENSCHIG00000000525) ##23	MTFR2 (ENSCHIG00000010590)	PDE7B (ENSCHIG00000026148)	AHI1 (ENSCHIG00000025335)	MYB (ENSCHIG00000009914)	HBS1L (ENSCHIG00000010299)	ALDH8A1 (ENSCHIG00000023305)	ENSCHIG00000003168	ENSCHIG00000007546	SGK1 (ENSCHIG00000010215)	SLC2A12 (ENSCHIG00000017082)	TBPL1 (ENSCHIG00000006206)	TCF21 (ENSCHIG00000015635)	EYA4 (ENSCHIG00000021889)	ENSCHIG00000015149
Rambouillet Sheep	MODERN SPECIES	24	REPS1 (ENSOARG00020008541)	ECT2L (ENSOARG00020008354)	CCDC28A (ENSOARG00020008233)	NHSL1 (ENSOARG00020008019)	HEBP2 (ENSOARG00020007983)	SMIM28 (ENSOARG00020007936)	ARFGEF3 (ENSOARG00020007298)	PERP (ENSOARG00020007239)	TNFAIP3 (ENSOARG00020023915)	OLIG3 (ENSOARG00020023905)	IL22RA2 (ENSOARG00020023864)	IFNGR1 (ENSOARG00020023838)	SLC35D3 (ENSOARG00020023727)	PEX7 (ENSOARG00020023693)	MAP3K5 (ENSOARG00020023530)	MAP7 (ENSOARG00020022779) ##22	BCLAF1 (ENSOARG00020022544) ##23	MTFR2 (ENSOARG00020022505)	PDE7B (ENSOARG00020022379)	AHI1 (ENSOARG00020022315)	MYB (ENSOARG00020021881)	ENSOARG00020021772	ENSOARG00020021719	ENSOARG00020021449	ALDH8A1 (ENSOARG00020021383)	ENSOARG00020021323	SGK1 (ENSOARG00020020794)	SLC2A12 (ENSOARG00020020681)	TBPL1 (ENSOARG00020020634)	TCF21 (ENSOARG00020020602)	EYA4 (ENSOARG00020020157)
Siberian musk deer	MODERN SPECIES	59	ENSMMSG00000001848	ENSMMSG00000001843	NHSL1 (ENSMMSG00000001822)	HEBP2 (ENSMMSG00000001795)	SMIM28 (ENSMMSG00000001785)	ARFGEF3 (ENSMMSG00000001733)	PERP (ENSMMSG00000001712)	TNFAIP3 (ENSMMSG00000001684)	OLIG3 (ENSMMSG00000001673)	IFNGR1 (ENSMMSG00000001659)	IL22RA2 (ENSMMSG00000001633)	IL20RA (ENSMMSG00000001560)	SLC35D3 (ENSMMSG00000001541)	PEX7 (ENSMMSG00000001524)	MAP3K5 (ENSMMSG00000001444)	MAP7 (ENSMMSG00000000545) ##22	BCLAF1 (ENSMMSG00000000221) ##23	MTFR2 (ENSMMSG00000000176)	PDE7B (ENSMMSG00000000115)
Yarkand deer	MODERN SPECIES	18	ECT2L (ENSCHYG00000026510)	CCDC28A (ENSCHYG00000026493)	ENSCHYG00000026481	NHSL1 (ENSCHYG00000026431)	ENSCHYG00000026400	ARFGEF3 (ENSCHYG00000026237)	PERP (ENSCHYG00000026194)	TNFAIP3 (ENSCHYG00000026166)	OLIG3 (ENSCHYG00000026133)	IFNGR1 (ENSCHYG00000026112)	IL22RA2 (ENSCHYG00000026095)	IL20RA (ENSCHYG00000026016)	SLC35D3 (ENSCHYG00000026002)	PEX7 (ENSCHYG00000025953)	MAP3K5 (ENSCHYG00000025879)	MAP7 (ENSCHYG00000025635) ##22	BCLAF1 (ENSCHYG00000025304) ##23	MTFR2 (ENSCHYG00000025255)	PDE7B (ENSCHYG00000025119)	ENSCHYG00000025071	AHI1 (ENSCHYG00000025009)	MYB (ENSCHYG00000024610)	HBS1L (ENSCHYG00000024451)	ALDH8A1 (ENSCHYG00000024259)	ENSCHYG00000024232	ENSCHYG00000024196	SGK1 (ENSCHYG00000023724)	SLC2A12 (ENSCHYG00000023610)	TBPL1 (ENSCHYG00000023559)	TCF21 (ENSCHYG00000023525)	ENSCHYG00000023506
Laurasiatheria_b	ANCESTRAL SPECIES	7	ENSGT00990000204448	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT01030000236221	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00950000183163.a.b ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00650000094590	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a	ENSGT00940000156674
Carnivora	ANCESTRAL SPECIES	4	ENSGT00990000204448	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT01030000236221	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00950000183163.a.b ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a	ENSGT00940000156674	ENSGT00390000013823.b.c.a.b
Felidae	ANCESTRAL SPECIES	5	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000167705	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00950000183163.a.b ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a	ENSGT00940000156674	ENSGT00390000013823.b.c.a.b
Panthera	ANCESTRAL SPECIES	7	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000167705	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00950000183163.a.b ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a	ENSGT00940000156674	ENSGT00390000013823.b.c.a.b
Panthera_a	ANCESTRAL SPECIES	4	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000167705	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00950000183163.a.b ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a	ENSGT00940000156674	ENSGT00390000013823.b.c.b
leopard	MODERN SPECIES	82	CCDC28A (ENSPPRG00000011913)	NHSL1 (ENSPPRG00000011486)	HEBP2 (ENSPPRG00000011018)	SMIM28 (ENSPPRG00000010627)	ARFGEF3 (ENSPPRG00000010225)	PERP (ENSPPRG00000010138)	ENSPPRG00000010132	TNFAIP3 (ENSPPRG00000009354)	OLIG3 (ENSPPRG00000021908)	ENSPPRG00000004790	IL22RA2 (ENSPPRG00000003819)	IL20RA (ENSPPRG00000003633)	SLC35D3 (ENSPPRG00000002355)	PEX7 (ENSPPRG00000002196)	MAP3K5 (ENSPPRG00000001889)	MAP7 (ENSPPRG00000001492) ##22	BCLAF1 (ENSPPRG00000023156) ##23	MTFR2 (ENSPPRG00000023744)	PDE7B (ENSPPRG00000024077)	AHI1 (ENSPPRG00000024365)	ENSPPRG00000014606	ENSPPRG00000014074	MYB (ENSPPRG00000012353)	HBS1L (ENSPPRG00000005285)	ALDH8A1 (ENSPPRG00000002155)	SGK1 (ENSPPRG00000000691)	SLC2A12 (ENSPPRG00000023028)	TBPL1 (ENSPPRG00000023235)	TCF21 (ENSPPRG00000023375)	EYA4 (ENSPPRG00000023698)	ENSPPRG00000006554
lion	MODERN SPECIES	5	ECT2L (ENSPLOG00000015583)	CCDC28A (ENSPLOG00000015533)	NHSL1 (ENSPLOG00000015317)	HEBP2 (ENSPLOG00000015180)	SMIM28 (ENSPLOG00000015131)	ARFGEF3 (ENSPLOG00000014795)	PERP (ENSPLOG00000014727)	TNFAIP3 (ENSPLOG00000014623)	OLIG3 (ENSPLOG00000014588)	IFNGR1 (ENSPLOG00000014560)	IL22RA2 (ENSPLOG00000014459)	IL20RA (ENSPLOG00000014290)	SLC35D3 (ENSPLOG00000014233)	PEX7 (ENSPLOG00000014121)	MAP3K5 (ENSPLOG00000013624)	MAP7 (ENSPLOG00000012805) ##22	BCLAF1 (ENSPLOG00000012177) ##23	MTFR2 (ENSPLOG00000012074)	PDE7B (ENSPLOG00000011814)	ENSPLOG00000011744	AHI1 (ENSPLOG00000011612)	MYB (ENSPLOG00000011318)	HBS1L (ENSPLOG00000011065)	ALDH8A1 (ENSPLOG00000010852)	SGK1 (ENSPLOG00000022564)	SLC2A12 (ENSPLOG00000022554)	TBPL1 (ENSPLOG00000022547)	TCF21 (ENSPLOG00000022539)	EYA4 (ENSPLOG00000022457)	RPS12 (ENSPLOG00000022370)	SLC18B1 (ENSPLOG00000022341)
Tiger	MODERN SPECIES	531	REPS1 (ENSPTIG00000008787)	ECT2L (ENSPTIG00000013828)	CCDC28A (ENSPTIG00000016053)	NHSL1 (ENSPTIG00000016469)	HEBP2 (ENSPTIG00000017165)	SMIM28 (ENSPTIG00000018314)	ARFGEF3 (ENSPTIG00000018636)	PERP (ENSPTIG00000020244)	TNFAIP3 (ENSPTIG00000020430)	ENSPTIG00000007628	IL22RA2 (ENSPTIG00000008359)	IL20RA (ENSPTIG00000008630)	SLC35D3 (ENSPTIG00000009793)	PEX7 (ENSPTIG00000009999)	MAP3K5 (ENSPTIG00000010843)	MAP7 (ENSPTIG00000013943) ##22	BCLAF1 (ENSPTIG00000019385) ##23	MTFR2 (ENSPTIG00000020220)	PDE7B (ENSPTIG00000020531)
Cat	MODERN SPECIES	236	CCDC28A (ENSFCAG00000026753)	NHSL1 (ENSFCAG00000027100)	HEBP2 (ENSFCAG00000039511)	SMIM28 (ENSFCAG00000046377)	ARFGEF3 (ENSFCAG00000013904)	PERP (ENSFCAG00000028929)	ENSFCAG00000039174	TNFAIP3 (ENSFCAG00000008135)	OLIG3 (ENSFCAG00000030246)	IFNGR1 (ENSFCAG00000030336)	IL22RA2 (ENSFCAG00000021984)	IL20RA (ENSFCAG00000029581)	SLC35D3 (ENSFCAG00000007846)	PEX7 (ENSFCAG00000029046)	MAP3K5 (ENSFCAG00000008186)	MAP7 (ENSFCAG00000008185) ##22	BCLAF1 (ENSFCAG00000027614) ##23	MTFR2 (ENSFCAG00000030038)	PDE7B (ENSFCAG00000029239)	ENSFCAG00000050931	ENSFCAG00000033467	AHI1 (ENSFCAG00000001813)	MYB (ENSFCAG00000001812)	HBS1L (ENSFCAG00000001810)	ALDH8A1 (ENSFCAG00000001809)	SGK1 (ENSFCAG00000013874)	SLC2A12 (ENSFCAG00000013872)	TBPL1 (ENSFCAG00000035311)	TCF21 (ENSFCAG00000031261)	EYA4 (ENSFCAG00000011142)	ENSFCAG00000034865
Caniformia	ANCESTRAL SPECIES	3	ENSGT00990000204448	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT01030000236221	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00950000183163.a.b ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.v	ENSGT00940000156674	ENSGT00390000013823.b.c.b
Canidae	ANCESTRAL SPECIES	34	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00990000204448	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00950000183163.a.b ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712.g.a	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a	ENSGT00940000156674	ENSGT00390000013823.b.c.b
Canis_lupus	ANCESTRAL SPECIES		ENSGT00990000204448	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00940000154746.f	ENSGT00390000007084.c.b.x.a.b	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00950000183163.a.b ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712.g.a	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a	ENSGT00940000156674	ENSGT00390000013823.b.c.b
Dingo	MODERN SPECIES	125	HEBP2 (ENSCAFG00020022905)	ARFGEF3 (ENSCAFG00020022866)	PERP (ENSCAFG00020022860)	TNFAIP3 (ENSCAFG00020022788)	OLIG3 (ENSCAFG00020022780)	ENSCAFG00020022773	ENSCAFG00020022772	IFNGR1 (ENSCAFG00020022770)	ENSCAFG00020022769	IL22RA2 (ENSCAFG00020022749)	IL20RA (ENSCAFG00020022742)	SLC35D3 (ENSCAFG00020022738)	PEX7 (ENSCAFG00020022697)	ENSCAFG00020022693	MAP3K5 (ENSCAFG00020022645)	MAP7 (ENSCAFG00020022565) ##22	BCLAF1 (ENSCAFG00020022554) ##23	MTFR2 (ENSCAFG00020022551)	PDE7B (ENSCAFG00020022549)	AHI1 (ENSCAFG00020022540)	MYB (ENSCAFG00020021933)	HBS1L (ENSCAFG00020021904)	ALDH8A1 (ENSCAFG00020021903)	SGK1 (ENSCAFG00020021876)	ENSCAFG00020021874	SLC2A12 (ENSCAFG00020021868)	ENSCAFG00020021865	TCF21 (ENSCAFG00020021862)	EYA4 (ENSCAFG00020021829)	ENSCAFG00020021815	RPS12 (ENSCAFG00020021808)
Dog	MODERN SPECIES		ENSCAFG00845007820	HEBP2 (ENSCAFG00845007775)	NHSL1 (ENSCAFG00845007489)	ARFGEF3 (ENSCAFG00845006884)	PERP (ENSCAFG00845006792)	TNFAIP3 (ENSCAFG00845006723)	ENSCAFG00845006691	ENSCAFG00845006623	ENSCAFG00845006600	IFNGR1 (ENSCAFG00845006567)	IL22RA2 (ENSCAFG00845006505)	IL20RA (ENSCAFG00845006434)	SLC35D3 (ENSCAFG00845006386)	PEX7 (ENSCAFG00845006309)	MAP3K5 (ENSCAFG00845006194)	MAP7 (ENSCAFG00845005916) ##22	ENSCAFG00845005728	BCLAF1 (ENSCAFG00845005654) ##23	MTFR2 (ENSCAFG00845005614)	PDE7B (ENSCAFG00845005425)	AHI1 (ENSCAFG00845005265)	MYB (ENSCAFG00845005160)	HBS1L (ENSCAFG00845005059)	ALDH8A1 (ENSCAFG00845005024)	SGK1 (ENSCAFG00845004995)	SLC2A12 (ENSCAFG00845004951)	ENSCAFG00845004931	TBPL1 (ENSCAFG00845004926)	TCF21 (ENSCAFG00845004920)	EYA4 (ENSCAFG00845004896)	RPS12 (ENSCAFG00845004862)
Red fox	MODERN SPECIES	26	HEBP2 (ENSVVUG00000002586)	ARFGEF3 (ENSVVUG00000002408)	ENSVVUG00000002382	TNFAIP3 (ENSVVUG00000002369)	ENSVVUG00000002359	OLIG3 (ENSVVUG00000002352)	ENSVVUG00000002335	ENSVVUG00000002326	IFNGR1 (ENSVVUG00000002286)	IL22RA2 (ENSVVUG00000002229)	IL20RA (ENSVVUG00000002217)	SLC35D3 (ENSVVUG00000002202)	PEX7 (ENSVVUG00000002175)	ENSVVUG00000002154	MAP3K5 (ENSVVUG00000000760)	MAP7 (ENSVVUG00000000652) ##22	ENSVVUG00000000623 ##23	ENSVVUG00000000603 ##23	MTFR2 (ENSVVUG00000000593)	PDE7B (ENSVVUG00000000584)	ENSVVUG00000000569	AHI1 (ENSVVUG00000000451)	MYB (ENSVVUG00000000361)	HBS1L (ENSVVUG00000000295)	ALDH8A1 (ENSVVUG00000000258)	ENSVVUG00000000216	SGK1 (ENSVVUG00000000114)	SLC2A12 (ENSVVUG00000000065)	TBPL1 (ENSVVUG00000019078)	TCF21 (ENSVVUG00000019073)	EYA4 (ENSVVUG00000019046)
Caniformia_b	ANCESTRAL SPECIES	6	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT01030000236221	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00950000183163.a.b ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.v	ENSGT00940000156674	ENSGT00390000013823.b.c.b
Mustelinae	ANCESTRAL SPECIES	8	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT01030000236221	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00950000183163.a.b ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00960000191483	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.b.a.b.a.b	ENSGT00940000156674
Ferret	MODERN SPECIES	166	CCDC28A (ENSMPUG00000014889)	NHSL1 (ENSMPUG00000014886)	HEBP2 (ENSMPUG00000014882)	ENSMPUG00000018880	ARFGEF3 (ENSMPUG00000014874)	PERP (ENSMPUG00000014873)	TNFAIP3 (ENSMPUG00000014869)	OLIG3 (ENSMPUG00000018873)	IFNGR1 (ENSMPUG00000014867)	IL22RA2 (ENSMPUG00000014865)	ENSMPUG00000014851	ENSMPUG00000014848	SLC35D3 (ENSMPUG00000014847)	PEX7 (ENSMPUG00000014844)	MAP3K5 (ENSMPUG00000014837)	MAP7 (ENSMPUG00000014832) ##22	BCLAF1 (ENSMPUG00000014831) ##23	ENSMPUG00000014828	PDE7B (ENSMPUG00000014824)	AHI1 (ENSMPUG00000014816)	MYB (ENSMPUG00000014814)	HBS1L (ENSMPUG00000014810)	ALDH8A1 (ENSMPUG00000014807)	SGK1 (ENSMPUG00000014805)	SLC2A12 (ENSMPUG00000014803)	TBPL1 (ENSMPUG00000014801)	TCF21 (ENSMPUG00000014798)	ENSMPUG00000014795	ENSMPUG00000014791	EYA4 (ENSMPUG00000014787)	ENSMPUG00000018871
American mink	MODERN SPECIES	74	CCDC28A (ENSNVIG00000019405)	NHSL1 (ENSNVIG00000019352)	HEBP2 (ENSNVIG00000019332)	ENSNVIG00000019309	ARFGEF3 (ENSNVIG00000019245)	PERP (ENSNVIG00000019220)	TNFAIP3 (ENSNVIG00000019197)	OLIG3 (ENSNVIG00000019187)	ENSNVIG00000019175	IFNGR1 (ENSNVIG00000019165)	IL22RA2 (ENSNVIG00000019145)	IL20RA (ENSNVIG00000019125)	SLC35D3 (ENSNVIG00000019115)	PEX7 (ENSNVIG00000019108)	MAP3K5 (ENSNVIG00000019047)	MAP7 (ENSNVIG00000019008) ##22	BCLAF1 (ENSNVIG00000018905) ##23	ENSNVIG00000018887	PDE7B (ENSNVIG00000018838)	AHI1 (ENSNVIG00000018672)	MYB (ENSNVIG00000018282)	HBS1L (ENSNVIG00000018178)	ALDH8A1 (ENSNVIG00000018134)	SGK1 (ENSNVIG00000017967)	SLC2A12 (ENSNVIG00000017918)	TBPL1 (ENSNVIG00000017887)	TCF21 (ENSNVIG00000017869)	ENSNVIG00000017856	EYA4 (ENSNVIG00000017341)	RPS12 (ENSNVIG00000017281)	SLC18B1 (ENSNVIG00000017254)
Ursidae	ANCESTRAL SPECIES	22	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT01030000236221	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00950000183163.a.b ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.v	ENSGT00940000156674	ENSGT00390000013823.b.c.b
Giant Panda	MODERN SPECIES	1	REPS1 (ENSAMEG00000011801)	ECT2L (ENSAMEG00000030520)	CCDC28A (ENSAMEG00000011847)	NHSL1 (ENSAMEG00000027320)	HEBP2 (ENSAMEG00000011854)	SMIM28 (ENSAMEG00000028841)	ENSAMEG00000026590	ARFGEF3 (ENSAMEG00000011859)	PERP (ENSAMEG00000010156)	TNFAIP3 (ENSAMEG00000010128)	ENSAMEG00000010111	IL20RA (ENSAMEG00000010092)	SLC35D3 (ENSAMEG00000010086)	PEX7 (ENSAMEG00000010081)	MAP3K5 (ENSAMEG00000010066)	MAP7 (ENSAMEG00000010023) ##22	BCLAF1 (ENSAMEG00000009989) ##23	MTFR2 (ENSAMEG00000009980)	PDE7B (ENSAMEG00000009953)	ENSAMEG00000024593	AHI1 (ENSAMEG00000009893)	MYB (ENSAMEG00000009813)	HBS1L (ENSAMEG00000009749)	ALDH8A1 (ENSAMEG00000009730)	SGK1 (ENSAMEG00000015983)	SLC2A12 (ENSAMEG00000015979)	TBPL1 (ENSAMEG00000015958)	TCF21 (ENSAMEG00000028257)	EYA4 (ENSAMEG00000015924)	ENSAMEG00000010227	RPS12 (ENSAMEG00000008015)
Ursus	ANCESTRAL SPECIES	45	ENSGT00940000158749	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00950000183163.a.b ##23	ENSGT00950000183215.c.a.a	ENSGT00390000008294.e.a.a.b	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.v	ENSGT00940000156674
Polar bear	MODERN SPECIES	172	REPS1 (ENSUMAG00000023760)	ECT2L (ENSUMAG00000023771)	CCDC28A (ENSUMAG00000023778)	NHSL1 (ENSUMAG00000023785)	HEBP2 (ENSUMAG00000023790)	ARFGEF3 (ENSUMAG00000023799)	PERP (ENSUMAG00000023810)	TNFAIP3 (ENSUMAG00000023812)	OLIG3 (ENSUMAG00000023816)	IFNGR1 (ENSUMAG00000023819)	IL22RA2 (ENSUMAG00000023821)	IL20RA (ENSUMAG00000023823)	SLC35D3 (ENSUMAG00000023825)	PEX7 (ENSUMAG00000023831)	MAP3K5 (ENSUMAG00000023881)	MAP7 (ENSUMAG00000024005) ##22	BCLAF1 (ENSUMAG00000024012) ##23	MTFR2 (ENSUMAG00000024015)	ENSUMAG00000024016	PDE7B (ENSUMAG00000024021)	AHI1 (ENSUMAG00000024032)	MYB (ENSUMAG00000024089)	HBS1L (ENSUMAG00000024395)	ALDH8A1 (ENSUMAG00000024399)	SGK1 (ENSUMAG00000024403)	SLC2A12 (ENSUMAG00000024404)	TBPL1 (ENSUMAG00000024406)	TCF21 (ENSUMAG00000024407)	EYA4 (ENSUMAG00000024408)	ENSUMAG00000024410	SLC18B1 (ENSUMAG00000024415)
American black bear	MODERN SPECIES	696																MAP7 (ENSUAMG00000006424) ##22
Laurasiatheria_c	ANCESTRAL SPECIES	6	ENSGT00500000044870.a	ENSGT00990000204448	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00950000183163.a.b ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00650000094590	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a	ENSGT00940000156674
Chiroptera	ANCESTRAL SPECIES	3	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00950000183163.a.b ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a	ENSGT00940000156674	ENSGT00390000013823.b.c.a.b
Microchiroptera	ANCESTRAL SPECIES	4	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00950000183163.a.b ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a	ENSGT00940000156674	ENSGT00390000013823.b.c.a.b
Greater horseshoe bat	MODERN SPECIES	21	NHSL1 (ENSRFEG00010004837)	HEBP2 (ENSRFEG00010004794)	SMIM28 (ENSRFEG00010004786)	ARFGEF3 (ENSRFEG00010004768)	PERP (ENSRFEG00010004754)	TNFAIP3 (ENSRFEG00010004741)	OLIG3 (ENSRFEG00010004731)	IFNGR1 (ENSRFEG00010004717)	IL22RA2 (ENSRFEG00010004706)	IL20RA (ENSRFEG00010004692)	ENSRFEG00010004684	SLC35D3 (ENSRFEG00010004673)	PEX7 (ENSRFEG00010004663)	ENSRFEG00010004658	MAP3K5 (ENSRFEG00010004611)	MAP7 (ENSRFEG00010004535) ##22	BCLAF1 (ENSRFEG00010004398) ##23	MTFR2 (ENSRFEG00010004336)	PDE7B (ENSRFEG00010004294)	ENSRFEG00010004274	AHI1 (ENSRFEG00010004178)	MYB (ENSRFEG00010004034)	HBS1L (ENSRFEG00010003918)	ALDH8A1 (ENSRFEG00010003820)	SGK1 (ENSRFEG00010003588)	SLC2A12 (ENSRFEG00010003467)	TBPL1 (ENSRFEG00010003438)	TCF21 (ENSRFEG00010003415)	EYA4 (ENSRFEG00010003348)	ENSRFEG00010003233	SLC18B1 (ENSRFEG00010003181)
Microbat	MODERN SPECIES	948	REPS1 (ENSMLUG00000003636)	ECT2L (ENSMLUG00000003634)	CCDC28A (ENSMLUG00000003625)	NHSL1 (ENSMLUG00000015321)	HEBP2 (ENSMLUG00000015318)	ARFGEF3 (ENSMLUG00000001476)	PERP (ENSMLUG00000001473)	TNFAIP3 (ENSMLUG00000011543)	OLIG3 (ENSMLUG00000026705)	IFNGR1 (ENSMLUG00000008601)	IL22RA2 (ENSMLUG00000011981)	IL20RA (ENSMLUG00000027725)	SLC35D3 (ENSMLUG00000007099)	PEX7 (ENSMLUG00000007080)	MAP3K5 (ENSMLUG00000007043)	MAP7 (ENSMLUG00000007011) ##22	BCLAF1 (ENSMLUG00000002343) ##23	MTFR2 (ENSMLUG00000002331)	PDE7B (ENSMLUG00000002323)	AHI1 (ENSMLUG00000002136)	MYB (ENSMLUG00000002125)	ENSMLUG00000025301	HBS1L (ENSMLUG00000010618)	ALDH8A1 (ENSMLUG00000010607)	SGK1 (ENSMLUG00000016791)	SLC2A12 (ENSMLUG00000016784)	TBPL1 (ENSMLUG00000002050)	TCF21 (ENSMLUG00000009194)	EYA4 (ENSMLUG00000017308)	RPS12 (ENSMLUG00000001137)	SLC18B1 (ENSMLUG00000005809)
Megabat	MODERN SPECIES	2269																MAP7 (ENSPVAG00000007234) ##22	BCLAF1 (ENSPVAG00000007233) ##23	MTFR2 (ENSPVAG00000007232)	PDE7B (ENSPVAG00000007231)
Equus	ANCESTRAL SPECIES	29	ENSGT00500000044870.a	ENSGT00990000204448	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00950000183163.a.b ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00650000094590	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.b.a.b.a.b	ENSGT00940000156674
Horse	MODERN SPECIES	1	ENSECAG00000049271	ENSECAG00000013025	HEBP2 (ENSECAG00000012705)	SMIM28 (ENSECAG00000042188)	ENSECAG00000052359	ARFGEF3 (ENSECAG00000011074)	PERP (ENSECAG00000010262)	TNFAIP3 (ENSECAG00000009626)	OLIG3 (ENSECAG00000009598)	IFNGR1 (ENSECAG00000009347)	IL22RA2 (ENSECAG00000008817)	IL20RA (ENSECAG00000007642)	SLC35D3 (ENSECAG00000007507)	PEX7 (ENSECAG00000007461)	MAP3K5 (ENSECAG00000024860)	MAP7 (ENSECAG00000024302) ##22	BCLAF1 (ENSECAG00000023692) ##23	MTFR2 (ENSECAG00000038834)	PDE7B (ENSECAG00000020846)	AHI1 (ENSECAG00000019646)	MYB (ENSECAG00000009918)	HBS1L (ENSECAG00000004470)	ALDH8A1 (ENSECAG00000021674)	ENSECAG00000029781	SGK1 (ENSECAG00000020431)	SLC2A12 (ENSECAG00000020239)	TBPL1 (ENSECAG00000019486)	TCF21 (ENSECAG00000019197)	ENSECAG00000051625	ENSECAG00000058049	EYA4 (ENSECAG00000009316)
Donkey	MODERN SPECIES	13	CCDC28A (ENSEASG00005011995)	ENSEASG00005037446	ENSEASG00005028125	HEBP2 (ENSEASG00005034494)	SMIM28 (ENSEASG00005028436)	ARFGEF3 (ENSEASG00005011767)	ENSEASG00005034498	TNFAIP3 (ENSEASG00005011724)	OLIG3 (ENSEASG00005011723)	IFNGR1 (ENSEASG00005011722)	IL22RA2 (ENSEASG00005011721)	IL20RA (ENSEASG00005028860)	SLC35D3 (ENSEASG00005030411)	PEX7 (ENSEASG00005011713)	MAP3K5 (ENSEASG00005011455)	MAP7 (ENSEASG00005011215) ##22	BCLAF1 (ENSEASG00005011177) ##23	MTFR2 (ENSEASG00005011169)	PDE7B (ENSEASG00005011165)	AHI1 (ENSEASG00005011162)	MYB (ENSEASG00005011157)	ENSEASG00005031142	HBS1L (ENSEASG00005011148)	ALDH8A1 (ENSEASG00005011139)	SGK1 (ENSEASG00005011126)	SLC2A12 (ENSEASG00005011123)	ENSEASG00005011118	TCF21 (ENSEASG00005011116)	EYA4 (ENSEASG00005011112)	RPS12 (ENSEASG00005011103)	SLC18B1 (ENSEASG00005011101)
Euarchontoglires	ANCESTRAL SPECIES	7	ENSGT00990000204448	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT01030000236221	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00950000183163.a.b ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00650000094590	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a	ENSGT00390000018318.u.b.b
Euarchontoglires_A	ANCESTRAL SPECIES	6	ENSGT00990000204448	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT01030000236221	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00950000183163.a.b ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00650000094590	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a	ENSGT00390000018318.u.b.b
Tree shrew	MODERN SPECIES	1625																MAP7 (ENSTBEG00000009437) ##22
Glires	ANCESTRAL SPECIES	5	ENSGT00990000204448	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT01030000236221	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00950000183163.a.b ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00650000094590	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a	ENSGT00390000018318.u.b.b
Rodentia	ANCESTRAL SPECIES	6	ENSGT00990000204448	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT01030000236221	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00950000183163.a.b ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00650000094590	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a	ENSGT00390000018318.u.b.b
Rodentia_A	ANCESTRAL SPECIES	8	ENSGT00990000204448	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT01030000236221	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00950000183163.a.b ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00650000094590	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a	ENSGT00390000018318.u.b.b
Sciuridae	ANCESTRAL SPECIES	1	ENSGT00990000204448	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT01030000236221	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00950000183163.a.b ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00650000094590	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.b.a.a	ENSGT00940000156674
Marmotini	ANCESTRAL SPECIES	11	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00990000204448	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00950000183163.a.b ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000163252.d	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.b.a.b.a.b	ENSGT00940000156674
Marmotini_b	ANCESTRAL SPECIES	59	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00990000204448	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00950000183163.a.b ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000163252.d	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.b.a.a	ENSGT00940000156674
Squirrel	MODERN SPECIES	160	REPS1 (ENSSTOG00000000920)	ECT2L (ENSSTOG00000027129)	CCDC28A (ENSSTOG00000021039)	NHSL1 (ENSSTOG00000002362)	HEBP2 (ENSSTOG00000020811)	ARFGEF3 (ENSSTOG00000028835)	PERP (ENSSTOG00000024446)	TNFAIP3 (ENSSTOG00000007860)	OLIG3 (ENSSTOG00000020214)	IFNGR1 (ENSSTOG00000023671)	IL22RA2 (ENSSTOG00000012313)	IL20RA (ENSSTOG00000016256)	SLC35D3 (ENSSTOG00000025129)	PEX7 (ENSSTOG00000025283)	MAP3K5 (ENSSTOG00000009007)	MAP7 (ENSSTOG00000008977) ##22	BCLAF1 (ENSSTOG00000013977) ##23	MTFR2 (ENSSTOG00000013967)	ENSSTOG00000021413	PDE7B (ENSSTOG00000020095)	AHI1 (ENSSTOG00000007607)	MYB (ENSSTOG00000007581)	HBS1L (ENSSTOG00000007551)	ALDH8A1 (ENSSTOG00000007535)	SGK1 (ENSSTOG00000028424)	SLC2A12 (ENSSTOG00000027759)	TBPL1 (ENSSTOG00000006786)	TCF21 (ENSSTOG00000023733)	EYA4 (ENSSTOG00000005069)	ENSSTOG00000031770	SLC18B1 (ENSSTOG00000009373)
Arctic ground squirrel	MODERN SPECIES	94	ECT2L (ENSUPAG00010003331)	CCDC28A (ENSUPAG00010003313)	ENSUPAG00010003303	NHSL1 (ENSUPAG00010003289)	HEBP2 (ENSUPAG00010003272)	ARFGEF3 (ENSUPAG00010003182)	PERP (ENSUPAG00010003162)	TNFAIP3 (ENSUPAG00010003126)	OLIG3 (ENSUPAG00010003123)	IFNGR1 (ENSUPAG00010003115)	IL22RA2 (ENSUPAG00010003105)	IL20RA (ENSUPAG00010003082)	SLC35D3 (ENSUPAG00010003080)	PEX7 (ENSUPAG00010003051)	MAP3K5 (ENSUPAG00010002902)	MAP7 (ENSUPAG00010002836) ##22	BCLAF1 (ENSUPAG00010002788) ##23	MTFR2 (ENSUPAG00010002758)	ENSUPAG00010002749	PDE7B (ENSUPAG00010002707)	AHI1 (ENSUPAG00010002656)	MYB (ENSUPAG00010002637)	ENSUPAG00010002482	ENSUPAG00010002240	SLC2A12 (ENSUPAG00010002225)	TBPL1 (ENSUPAG00010002221)	ENSUPAG00010002212
Alpin marmot	MODERN SPECIES	2	ABRACL (ENSMMMG00000000595)	REPS1 (ENSMMMG00000000445)	ECT2L (ENSMMMG00000000082)	CCDC28A (ENSMMMG00000000049)	NHSL1 (ENSMMMG00000000011)	HEBP2 (ENSMMMG00000019485)	ARFGEF3 (ENSMMMG00000019413)	PERP (ENSMMMG00000019402)	TNFAIP3 (ENSMMMG00000019379)	OLIG3 (ENSMMMG00000019365)	IFNGR1 (ENSMMMG00000019328)	IL22RA2 (ENSMMMG00000019318)	IL20RA (ENSMMMG00000019314)	PEX7 (ENSMMMG00000019290)	MAP3K5 (ENSMMMG00000019235)	MAP7 (ENSMMMG00000019204) ##22	BCLAF1 (ENSMMMG00000019134) ##23	MTFR2 (ENSMMMG00000019120)	ENSMMMG00000019117	PDE7B (ENSMMMG00000019089)	AHI1 (ENSMMMG00000019073)	MYB (ENSMMMG00000019066)	HBS1L (ENSMMMG00000019006)	ALDH8A1 (ENSMMMG00000019004)	ENSMMMG00000018939	SGK1 (ENSMMMG00000018673)	SLC2A12 (ENSMMMG00000018652)	TBPL1 (ENSMMMG00000018642)	TCF21 (ENSMMMG00000018609)	EYA4 (ENSMMMG00000018511)	ENSMMMG00000018382
Eurasian red squirrel	DUPLICATION
Eurasian red squirrel	MODERN SPECIES	16	NHSL1 (ENSSVLG00005019612)	HEBP2 (ENSSVLG00005019746)	SMIM28 (ENSSVLG00005019863)	ENSSVLG00005019905	ARFGEF3 (ENSSVLG00005019965)	PERP (ENSSVLG00005020408)	TNFAIP3 (ENSSVLG00005020456)	OLIG3 (ENSSVLG00005020760)	IFNGR1 (ENSSVLG00005020792)	IL22RA2 (ENSSVLG00005020977)	IL20RA (ENSSVLG00005021081)	SLC35D3 (ENSSVLG00005021290)	PEX7 (ENSSVLG00005006033)	MAP3K5 (ENSSVLG00005006091)	ENSSVLG00005006276 ##22	ENSSVLG00005006372 ##22	ENSSVLG00005006470	ENSSVLG00005006489	ENSSVLG00005006502	ENSSVLG00005006526	ENSSVLG00005006545	ENSSVLG00005006663 ##23	ENSSVLG00005006924	PDE7B (ENSSVLG00005007033)	AHI1 (ENSSVLG00005007162)	MYB (ENSSVLG00005007375)	ENSSVLG00005007995	ENSSVLG00005008038	ALDH8A1 (ENSSVLG00005008086)	ENSSVLG00005008214	SGK1 (ENSSVLG00005008322)
Eurasian red squirrel	MODERN SPECIES	16	CCDC28A (ENSSVLG00005019475)	NHSL1 (ENSSVLG00005019612)	HEBP2 (ENSSVLG00005019746)	SMIM28 (ENSSVLG00005019863)	ENSSVLG00005019905	ARFGEF3 (ENSSVLG00005019965)	PERP (ENSSVLG00005020408)	TNFAIP3 (ENSSVLG00005020456)	OLIG3 (ENSSVLG00005020760)	IFNGR1 (ENSSVLG00005020792)	IL22RA2 (ENSSVLG00005020977)	IL20RA (ENSSVLG00005021081)	SLC35D3 (ENSSVLG00005021290)	PEX7 (ENSSVLG00005006033)	MAP3K5 (ENSSVLG00005006091)	ENSSVLG00005006276 ##22	ENSSVLG00005006372 ##22	ENSSVLG00005006470	ENSSVLG00005006489	ENSSVLG00005006502	ENSSVLG00005006526	ENSSVLG00005006545	ENSSVLG00005006663 ##23	ENSSVLG00005006924	PDE7B (ENSSVLG00005007033)	AHI1 (ENSSVLG00005007162)	MYB (ENSSVLG00005007375)	ENSSVLG00005007995	ENSSVLG00005008038	ALDH8A1 (ENSSVLG00005008086)	ENSSVLG00005008214
Hystricomorpha	ANCESTRAL SPECIES	39	ENSGT00940000158749	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00950000182963.a.a.b	ENSGT00940000160412	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00950000183163.a.b ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174
Naked mole-rat female	MODERN SPECIES		ARFGEF3 (ENSHGLG00000015503)	ENSHGLG00000034232	PERP (ENSHGLG00000017932)	ENSHGLG00000037648	ENSHGLG00000005679	OLIG3 (ENSHGLG00000020086)	ENSHGLG00000047576	IL22RA2 (ENSHGLG00000001748)	ENSHGLG00000036039	IL20RA (ENSHGLG00000002408)	ENSHGLG00000038313	SLC35D3 (ENSHGLG00000000195)	PEX7 (ENSHGLG00000000229)	ENSHGLG00000035518	MAP3K5 (ENSHGLG00000000842)	MAP7 (ENSHGLG00000000995) ##22	BCLAF1 (ENSHGLG00000001879) ##23	ENSHGLG00000000549	PDE7B (ENSHGLG00000048791)	ENSHGLG00000002954	AHI1 (ENSHGLG00000003261)	MYB (ENSHGLG00000000878)	HBS1L (ENSHGLG00000000516)	ALDH8A1 (ENSHGLG00000000876)	SGK1 (ENSHGLG00000000909)	ENSHGLG00000019010	SLC2A12 (ENSHGLG00000000953)	ENSHGLG00000046831	TCF21 (ENSHGLG00000035092)	ENSHGLG00000040407	ENSHGLG00000032159
Hystricomorpha_a	ANCESTRAL SPECIES	30	ENSGT00940000158749	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00950000182963.a.a.b	ENSGT00940000160412	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00950000183163.a.b ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00530000063558.B	ENSGT00940000157993	ENSGT00390000004172	ENSGT01090000260082.d.b.i
Guinea pig	MODERN SPECIES	41									OLIG3 (ENSCPOG00000007516)	IFNGR1 (ENSCPOG00000012963)	IL22RA2 (ENSCPOG00000025110)	IL20RA (ENSCPOG00000037107)	SLC35D3 (ENSCPOG00000010798)	PEX7 (ENSCPOG00000007704)	MAP3K5 (ENSCPOG00000004244)	MAP7 (ENSCPOG00000004237) ##22	BCLAF1 (ENSCPOG00000008088) ##23	MTFR2 (ENSCPOG00000008084)	PDE7B (ENSCPOG00000035879)	ENSCPOG00000030097	MYB (ENSCPOG00000014607)	HBS1L (ENSCPOG00000007015)	ALDH8A1 (ENSCPOG00000007012)	SGK1 (ENSCPOG00000001494)	SLC2A12 (ENSCPOG00000001493)	TBPL1 (ENSCPOG00000011899)	TCF21 (ENSCPOG00000024201)	FNDC1 (ENSCPOG00000006443)	TAGAP (ENSCPOG00000006603)	RSPH3 (ENSCPOG00000014634)	EZR (ENSCPOG00000004306)
Hystricomorpha_b	ANCESTRAL SPECIES	29	ENSGT00940000158749	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00950000182963.a.a.b	ENSGT00940000160412	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00950000183163.a.b ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00530000063558.B	ENSGT00940000157993	ENSGT00390000004172	ENSGT01090000260082.d.b.i
Long-tailed chinchilla	MODERN SPECIES	146												SLC35D3 (ENSCLAG00000003234)	PEX7 (ENSCLAG00000003272)	MAP3K5 (ENSCLAG00000007503)	ENSCLAG00000012716	ENSCLAG00000003926 ##22	BCLAF1 (ENSCLAG00000004401) ##23	MTFR2 (ENSCLAG00000005292)	PDE7B (ENSCLAG00000007039)	AHI1 (ENSCLAG00000003003)	MYB (ENSCLAG00000005675)	HBS1L (ENSCLAG00000004937)	ALDH8A1 (ENSCLAG00000005380)	SGK1 (ENSCLAG00000006128)	SLC2A12 (ENSCLAG00000002848)	TBPL1 (ENSCLAG00000003071)	TCF21 (ENSCLAG00000003324)	ENSCLAG00000006768	FNDC1 (ENSCLAG00000007668)	TAGAP (ENSCLAG00000002626)	RSPH3 (ENSCLAG00000002659)
Degu	MODERN SPECIES	65	NHSL1 (ENSODEG00000008039)	HEBP2 (ENSODEG00000007586)	ENSODEG00000009708	ARFGEF3 (ENSODEG00000008382)	ENSODEG00000008459	TNFAIP3 (ENSODEG00000008925)	ENSODEG00000019565	OLIG3 (ENSODEG00000019534)	ENSODEG00000019506	ENSODEG00000008408	IL22RA2 (ENSODEG00000007775)	IL20RA (ENSODEG00000006756)	SLC35D3 (ENSODEG00000006620)	ENSODEG00000008240	ENSODEG00000008040	MAP7 (ENSODEG00000008448) ##22	ENSODEG00000006806 ##23	MTFR2 (ENSODEG00000006976)	PDE7B (ENSODEG00000007023)	ENSODEG00000007137	ENSODEG00000006953	ENSODEG00000019597	ENSODEG00000008684	HBS1L (ENSODEG00000008959)	ALDH8A1 (ENSODEG00000007514)	ENSODEG00000006585	SLC2A12 (ENSODEG00000007816)	ENSODEG00000006582	TCF21 (ENSODEG00000007820)	ENSODEG00000019436	FNDC1 (ENSODEG00000007591)
Rodentia_B	ANCESTRAL SPECIES	18	ENSGT00940000158749	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00950000183163.a.b ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00650000094590	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a	ENSGT00390000018318.u.b.b
Kangaroo rat	MODERN SPECIES	416	Reps1 (ENSDORG00000000649)	Ect2l (ENSDORG00000011210)	Ccdc28a (ENSDORG00000011206)	Nhsl1 (ENSDORG00000028836)	Hebp2 (ENSDORG00000008127)	Arfgef3 (ENSDORG00000000555)	Perp (ENSDORG00000026815)	ENSDORG00000002537	Olig3 (ENSDORG00000013033)	Ifngr1 (ENSDORG00000003816)	Il22ra2 (ENSDORG00000003815)	Il20ra (ENSDORG00000006038)	Slc35d3 (ENSDORG00000006037)	Pex7 (ENSDORG00000006036)	ENSDORG00000001559	Map7 (ENSDORG00000011587) ##22	ENSDORG00000026911	Bclaf1 (ENSDORG00000015144) ##23	Mtfr2 (ENSDORG00000011726)	Pde7b (ENSDORG00000011723)	Ahi1 (ENSDORG00000005963)	Myb (ENSDORG00000005960)	Hbs1l (ENSDORG00000005958)	Aldh8a1 (ENSDORG00000012210)	Sgk1 (ENSDORG00000006576)	Slc2a12 (ENSDORG00000001098)	Tbpl1 (ENSDORG00000026809)	Tcf21 (ENSDORG00000028001)	Eya4 (ENSDORG00000009832)	ENSDORG00000016670	Slc18b1 (ENSDORG00000016669)
Myomorpha	ANCESTRAL SPECIES	21	ENSGT00940000158749	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00950000183163.a.b ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00650000094590	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a	ENSGT00390000018318.u.b.b
Lesser Egyptian jerboa	MODERN SPECIES	44	Abracl (ENSJJAG00000010066)	Reps1 (ENSJJAG00000020855)	Ect2l (ENSJJAG00000016035)	ENSJJAG00000021466	Nhsl1 (ENSJJAG00000008856)	Hebp2 (ENSJJAG00000009933)	Arfgef3 (ENSJJAG00000008415)	Perp (ENSJJAG00000021130)	ENSJJAG00000020726	Olig3 (ENSJJAG00000001512)	Il22ra2 (ENSJJAG00000007140)	Il20ra (ENSJJAG00000019171)	Slc35d3 (ENSJJAG00000014674)	Pex7 (ENSJJAG00000016195)	ENSJJAG00000012639	Map7 (ENSJJAG00000023344) ##22	Bclaf1 (ENSJJAG00000011803) ##23	Pde7b (ENSJJAG00000001518)	Ahi1 (ENSJJAG00000010372)	Myb (ENSJJAG00000023989)	ENSJJAG00000017024	Aldh8a1 (ENSJJAG00000014136)	ENSJJAG00000009072	Sgk1 (ENSJJAG00000003911)	Slc2a12 (ENSJJAG00000003595)	ENSJJAG00000007350	Tcf21 (ENSJJAG00000010513)	Eya4 (ENSJJAG00000012851)	ENSJJAG00000006059	ENSJJAG00000004347	Slc18b1 (ENSJJAG00000012667)
Muroidea	ANCESTRAL SPECIES	22	ENSGT00940000158749	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00950000183163.a.b ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00650000094590	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a	ENSGT00390000018318.u.b.b
Upper Galilee mountains blind mole rat	MODERN SPECIES	1789	Ccdc28a (ENSNGAG00000011725)	Nhsl1 (ENSNGAG00000019810)	ENSNGAG00000000988	Hebp2 (ENSNGAG00000003578)	Arfgef3 (ENSNGAG00000010293)	Perp (ENSNGAG00000017566)	ENSNGAG00000018978	Olig3 (ENSNGAG00000018786)	Ifngr1 (ENSNGAG00000010028)	Il22ra2 (ENSNGAG00000000838)	ENSNGAG00000012948	Il20ra (ENSNGAG00000005056)	Slc35d3 (ENSNGAG00000015318)	Pex7 (ENSNGAG00000018527)	Map3k5 (ENSNGAG00000000561)	Map7 (ENSNGAG00000019743) ##22	Bclaf1 (ENSNGAG00000016813) ##23	Mtfr2 (ENSNGAG00000001241)	Pde7b (ENSNGAG00000010650)	Ahi1 (ENSNGAG00000017747)	Myb (ENSNGAG00000006199)	Hbs1l (ENSNGAG00000015184)	Aldh8a1 (ENSNGAG00000009983)	Sgk1 (ENSNGAG00000017569)	Slc2a12 (ENSNGAG00000015437)	Tbpl1 (ENSNGAG00000002735)	Tcf21 (ENSNGAG00000010530)	Eya4 (ENSNGAG00000014955)	ENSNGAG00000008061	ENSNGAG00000017824	Slc18b1 (ENSNGAG00000001177)
Muroidea_A	ANCESTRAL SPECIES	11	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00530000064150	ENSGT00940000160886.p.a.a.b	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00950000183163.a.b ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00650000094590	ENSGT00940000156274	ENSGT00940000156799	ENSGT00950000183442	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a
Murinae	ANCESTRAL SPECIES	30	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00530000064150	ENSGT00940000160886.p.a.a.b	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00950000183163.a.b ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT01050000248461	ENSGT00950000183442	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT01050000248247	ENSGT00940000160174	ENSGT00950000182978.A.a.a
Mus	ANCESTRAL SPECIES	15	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00530000064150	ENSGT00940000160886.p.a.a.b	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00900000143307	ENSGT00950000183163.a.b ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00650000094590	ENSGT00940000156799	ENSGT00950000183442	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT01050000248247	ENSGT00940000160174
Mus_A	ANCESTRAL SPECIES	11	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00530000064150	ENSGT00940000160886.p.a.a.b	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00900000143457	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00900000143307	ENSGT00950000183163.a.b ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00650000094590	ENSGT00940000156799	ENSGT00950000183442	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT01050000248247	ENSGT00940000160174
Mus_B	ANCESTRAL SPECIES	10	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00530000064150	ENSGT00940000160886.p.a.a.b	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00900000143457	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00900000143307	ENSGT00950000183163.a.b ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00650000094590	ENSGT00940000156799	ENSGT00950000183442	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT01050000248247	ENSGT00940000160174
Mouse	MODERN SPECIES	1	Ect2l (ENSMUSG00000071392)	Ccdc28a (ENSMUSG00000059554)	Nhsl1 (ENSMUSG00000039835)	Hebp2 (ENSMUSG00000019853)	Arfgef3 (ENSMUSG00000019852)	Gm4922 (ENSMUSG00000044624)	Perp (ENSMUSG00000019851)	Tnfaip3 (ENSMUSG00000019850)	Olig3 (ENSMUSG00000045591)	Ifngr1 (ENSMUSG00000020009)	Il22ra2 (ENSMUSG00000039760)	Il20ra (ENSMUSG00000020007)	Slc35d3 (ENSMUSG00000050473)	Pex7 (ENSMUSG00000020003)	Map3k5 (ENSMUSG00000071369)	Map7 (ENSMUSG00000019996) ##22	Bclaf1 (ENSMUSG00000037608) ##23	Mtfr2 (ENSMUSG00000019992)	Pde7b (ENSMUSG00000019990)	Ahi1 (ENSMUSG00000019986)	Myb (ENSMUSG00000019982)	Hbs1l (ENSMUSG00000019977)	Aldh8a1 (ENSMUSG00000037542)	1700020N01Rik (ENSMUSG00000050844)	Sgk1 (ENSMUSG00000019970)	Semp2l2b (ENSMUSG00000069712)	Raet1e (ENSMUSG00000053219)	H60b (ENSMUSG00000075297)	Raet1d (ENSMUSG00000078452)	Slc2a12 (ENSMUSG00000037490)	Tbpl1 (ENSMUSG00000071359)
Mus_C	ANCESTRAL SPECIES	7	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00530000064150	ENSGT00940000160886.p.a.a.b	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00900000143457	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00900000143307	ENSGT00950000183163.a.b ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00650000094590	ENSGT00940000156799	ENSGT00950000183442	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a
spretus	MODERN SPECIES	1	Ccdc28a (MGP_SPRETEiJ_G0015948)	Nhsl1 (MGP_SPRETEiJ_G0015949)	Hebp2 (MGP_SPRETEiJ_G0015950)	Arfgef3 (MGP_SPRETEiJ_G0015951)	Gm4922 (MGP_SPRETEiJ_G0015952)	Perp (MGP_SPRETEiJ_G0015953)	Tnfaip3 (MGP_SPRETEiJ_G0015954)	Olig3 (MGP_SPRETEiJ_G0015955)	MGP_SPRETEiJ_G0015956	Il22ra2 (MGP_SPRETEiJ_G0015957)	MGP_SPRETEiJ_G0015958	Il20ra (MGP_SPRETEiJ_G0015959)	Slc35d3 (MGP_SPRETEiJ_G0015960)	Pex7 (MGP_SPRETEiJ_G0015961)	Map3k5 (MGP_SPRETEiJ_G0015962)	Map7 (MGP_SPRETEiJ_G0015963) ##22	MGP_SPRETEiJ_G0015964	Bclaf1 (MGP_SPRETEiJ_G0015965) ##23	MGP_SPRETEiJ_G0015966	Pde7b (MGP_SPRETEiJ_G0015967)	MGP_SPRETEiJ_G0015968	Myb (MGP_SPRETEiJ_G0015969)	Hbs1l (MGP_SPRETEiJ_G0015970)	MGP_SPRETEiJ_G0015971	Aldh8a1 (MGP_SPRETEiJ_G0015972)	1700020N01Rik (MGP_SPRETEiJ_G0015973)	Sgk1 (MGP_SPRETEiJ_G0015974)	Slc2a12 (MGP_SPRETEiJ_G0015975)	Tbpl1 (MGP_SPRETEiJ_G0015976)	Tcf21 (MGP_SPRETEiJ_G0015977)	Eya4 (MGP_SPRETEiJ_G0015979)
Steppe mouse	MODERN SPECIES	3417	Ccdc28a (ENSMSIG00000029093)	ENSMSIG00000029087	Nhsl1 (ENSMSIG00000029059)	Hebp2 (ENSMSIG00000029046)	Arfgef3 (ENSMSIG00000029021)	Gm4922 (ENSMSIG00000029018)	Perp (ENSMSIG00000029013)	Tnfaip3 (ENSMSIG00000029003)	Olig3 (ENSMSIG00000028998)	Ifngr1 (ENSMSIG00000028993)	Il22ra2 (ENSMSIG00000028990)	Il20ra (ENSMSIG00000028984)	Slc35d3 (ENSMSIG00000028978)	Pex7 (ENSMSIG00000028956)	Map3k5 (ENSMSIG00000028883)	Map7 (ENSMSIG00000028825) ##22	ENSMSIG00000028821	Bclaf1 (ENSMSIG00000028794) ##23
Ryukyu mouse	MODERN SPECIES	1	MGP_CAROLIEiJ_G0015140	Nhsl1 (MGP_CAROLIEiJ_G0015141)	Hebp2 (MGP_CAROLIEiJ_G0015142)	Arfgef3 (MGP_CAROLIEiJ_G0015143)	Gm4922 (MGP_CAROLIEiJ_G0015144)	Perp (MGP_CAROLIEiJ_G0015145)	Tnfaip3 (MGP_CAROLIEiJ_G0015146)	Olig3 (MGP_CAROLIEiJ_G0015147)	Ifngr1 (MGP_CAROLIEiJ_G0015148)	Il22ra2 (MGP_CAROLIEiJ_G0015149)	MGP_CAROLIEiJ_G0015150	Il20ra (MGP_CAROLIEiJ_G0015151)	Slc35d3 (MGP_CAROLIEiJ_G0015152)	Pex7 (MGP_CAROLIEiJ_G0015153)	Map3k5 (MGP_CAROLIEiJ_G0015154)	Map7 (MGP_CAROLIEiJ_G0015155) ##22	MGP_CAROLIEiJ_G0015156	Bclaf1 (MGP_CAROLIEiJ_G0015157) ##23	Mtfr2 (MGP_CAROLIEiJ_G0015158)	Pde7b (MGP_CAROLIEiJ_G0015159)	Ahi1 (MGP_CAROLIEiJ_G0015160)	Myb (MGP_CAROLIEiJ_G0015161)	Hbs1l (MGP_CAROLIEiJ_G0015162)	MGP_CAROLIEiJ_G0015163	Aldh8a1 (MGP_CAROLIEiJ_G0015164)	1700020N01Rik (MGP_CAROLIEiJ_G0015165)	Sgk1 (MGP_CAROLIEiJ_G0015166)	Slc2a12 (MGP_CAROLIEiJ_G0015167)	Tbpl1 (MGP_CAROLIEiJ_G0015168)	Tcf21 (MGP_CAROLIEiJ_G0015169)	Eya4 (MGP_CAROLIEiJ_G0015170)
Shrew mouse	MODERN SPECIES	13	Nhsl1 (MGP_PahariEiJ_G0023760)	Hebp2 (MGP_PahariEiJ_G0023761)	Arfgef3 (MGP_PahariEiJ_G0023762)	Gm4922 (MGP_PahariEiJ_G0023763)	Perp (MGP_PahariEiJ_G0023764)	Tnfaip3 (MGP_PahariEiJ_G0023765)	MGP_PahariEiJ_G0023766	Olig3 (MGP_PahariEiJ_G0023767)	Ifngr1 (MGP_PahariEiJ_G0023768)	Il22ra2 (MGP_PahariEiJ_G0023769)	MGP_PahariEiJ_G0023770	Il20ra (MGP_PahariEiJ_G0023771)	Slc35d3 (MGP_PahariEiJ_G0023772)	Pex7 (MGP_PahariEiJ_G0023773)	Map3k5 (MGP_PahariEiJ_G0023774)	Map7 (MGP_PahariEiJ_G0023775) ##22	MGP_PahariEiJ_G0023776	MGP_PahariEiJ_G0023777 ##23	Mtfr2 (MGP_PahariEiJ_G0023778)	Pde7b (MGP_PahariEiJ_G0023779)	Ahi1 (MGP_PahariEiJ_G0023780)	Myb (MGP_PahariEiJ_G0023781)	Hbs1l (MGP_PahariEiJ_G0023782)	MGP_PahariEiJ_G0023783	Aldh8a1 (MGP_PahariEiJ_G0023784)	1700020N01Rik (MGP_PahariEiJ_G0023785)	Sgk1 (MGP_PahariEiJ_G0023786)	Slc2a12 (MGP_PahariEiJ_G0023787)	Tbpl1 (MGP_PahariEiJ_G0023788)	Tcf21 (MGP_PahariEiJ_G0023789)	Eya4 (MGP_PahariEiJ_G0023790)
Rat	MODERN SPECIES		Nhsl1 (ENSRNOG00000060603)	Hebp2 (ENSRNOG00000053735)	Arfgef3 (ENSRNOG00000011460)	RGD1560303 (ENSRNOG00000025799)	Perp (ENSRNOG00000011994)	Tnfaip3 (ENSRNOG00000049517)	Olig3 (ENSRNOG00000064127)	ENSRNOG00000064148	Ifngr1 (ENSRNOG00000012074)	Il22ra2 (ENSRNOG00000012259)	Il20ra (ENSRNOG00000012286)	Slc35d3 (ENSRNOG00000012311)	Pex7 (ENSRNOG00000012322)	RGD1562402 (ENSRNOG00000040273)	Map3k5 (ENSRNOG00000031700)	Map7 (ENSRNOG00000012701) ##22	ENSRNOG00000068973	Mtfr2 (ENSRNOG00000058050) ##23	Pde7b (ENSRNOG00000013436)	Ahi1 (ENSRNOG00000013969)	Myb (ENSRNOG00000055858)	Hbs1l (ENSRNOG00000014531)	Aldh8a1 (ENSRNOG00000014907)	Themis (ENSRNOG00000014979)	ENSRNOG00000062873	Ptprk (ENSRNOG00000047605)	ENSRNOG00000069014	Lama2 (ENSRNOG00000011134)	AABR07000583.1 (ENSRNOG00000046438)	Arhgap18 (ENSRNOG00000011245)	LOC120097699 (ENSRNOG00000063903)
Cricetidae	ANCESTRAL SPECIES	11	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00530000064150	ENSGT00940000160886.p.a.a.b	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00950000183163.a.b ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248.pc	ENSGT00650000094590	ENSGT00940000156274	ENSGT00940000156799	ENSGT00950000183442	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.b.b
Cricetinae	ANCESTRAL SPECIES	7	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00530000064150	ENSGT00940000160886.p.a.a.b	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00950000183163.a.b ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248.pc	ENSGT00940000156274	ENSGT00940000156799	ENSGT00950000183442	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.b.b	ENSGT00940000156674
Chinese hamster chok1gshd	MODERN SPECIES	1	Ect2l (ENSCGRG00001022333)	Ccdc28a (ENSCGRG00001018901)	Nhsl1 (ENSCGRG00001021948)	Hebp2 (ENSCGRG00001020023)	Arfgef3 (ENSCGRG00001019486)	Gm4922 (ENSCGRG00001006023)	Perp (ENSCGRG00001020200)	Tnfaip3 (ENSCGRG00001019749)	Olig3 (ENSCGRG00001006525)	Ifngr1 (ENSCGRG00001021869)	Il22ra2 (ENSCGRG00001020957)	Il20ra (ENSCGRG00001020064)	Slc35d3 (ENSCGRG00001006411)	PEX7 (ENSCGRG00001004544)	Map3k5 (ENSCGRG00001009680)	Map7 (ENSCGRG00001024812) ##22	ENSCGRG00001024620 ##23	Mtfr2 (ENSCGRG00001024312)	Pde7b (ENSCGRG00001021298)	Ahi1 (ENSCGRG00001019676)	Myb (ENSCGRG00001018869)	Hbs1l (ENSCGRG00001024531)	Aldh8a1 (ENSCGRG00001023246)	1700020N01Rik (ENSCGRG00001006553)	Sgk1 (ENSCGRG00001022228)	ENSCGRG00001005727	Lin28b (ENSCGRG00001024078)	Bves (ENSCGRG00001023624)	Popdc3 (ENSCGRG00001024360)	Prep (ENSCGRG00001023843)	Prdm1 (ENSCGRG00001023291)
Cricetidae_B	ANCESTRAL SPECIES	21	ENSGT00940000158749	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00950000183163.a.b ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248.pc	ENSGT00650000094590	ENSGT00940000156274	ENSGT00940000156799	ENSGT00950000183442	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.b.a.b.a.b
Prairie vole	MODERN SPECIES	354	Ect2l (ENSMOCG00000000813)	Ccdc28a (ENSMOCG00000015425)	Nhsl1 (ENSMOCG00000021012)	Hebp2 (ENSMOCG00000011108)	Arfgef3 (ENSMOCG00000009174)	Perp (ENSMOCG00000012264)	Tnfaip3 (ENSMOCG00000006328)	Olig3 (ENSMOCG00000001779)	ENSMOCG00000018866	Ifngr1 (ENSMOCG00000003677)	Il22ra2 (ENSMOCG00000006128)	Il20ra (ENSMOCG00000022279)	Slc35d3 (ENSMOCG00000018328)	Pex7 (ENSMOCG00000016916)	Map3k5 (ENSMOCG00000019021)	Map7 (ENSMOCG00000010774) ##22	Bclaf1 (ENSMOCG00000005885) ##23	Mtfr2 (ENSMOCG00000004425)	ENSMOCG00000006744	Pde7b (ENSMOCG00000018081)	Ahi1 (ENSMOCG00000019913)	ENSMOCG00000016189	ENSMOCG00000014988	ENSMOCG00000020414	Hbs1l (ENSMOCG00000023038)	Aldh8a1 (ENSMOCG00000013932)	1700020N01Rik (ENSMOCG00000017055)	Sgk1 (ENSMOCG00000008011)	Slc2a12 (ENSMOCG00000001440)	Tbpl1 (ENSMOCG00000022781)	Tcf21 (ENSMOCG00000016422)
Northern American deer mouse	MODERN SPECIES	7	Nhsl1 (ENSPEMG00000004680)	Hebp2 (ENSPEMG00000020471)	Arfgef3 (ENSPEMG00000006396)	ENSPEMG00000016223	ENSPEMG00000031383	Perp (ENSPEMG00000015920)	Tnfaip3 (ENSPEMG00000000880)	Olig3 (ENSPEMG00000008406)	ENSPEMG00000026149	Ifngr1 (ENSPEMG00000007579)	Il22ra2 (ENSPEMG00000027600)	Il20ra (ENSPEMG00000020460)	Slc35d3 (ENSPEMG00000029399)	Pex7 (ENSPEMG00000021366)	Map3k5 (ENSPEMG00000015212)	Map7 (ENSPEMG00000006441) ##22	ENSPEMG00000029424	Mtfr2 (ENSPEMG00000017505)	Pde7b (ENSPEMG00000013435)	ENSPEMG00000010391	Ahi1 (ENSPEMG00000007907)	Myb (ENSPEMG00000000233)	ENSPEMG00000024833	Hbs1l (ENSPEMG00000014369)	Aldh8a1 (ENSPEMG00000013721)	1700020N01Rik (ENSPEMG00000011791)	Sgk1 (ENSPEMG00000009727)	Slc2a12 (ENSPEMG00000006268)	Tbpl1 (ENSPEMG00000004800)	Tcf21 (ENSPEMG00000003503)	ENSPEMG00000025529
Lagomorpha	ANCESTRAL SPECIES	34	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00950000183163.a.b ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a	ENSGT00940000156674	ENSGT00390000013823.b.c.a.b
Rabbit	MODERN SPECIES	3	ECT2L (ENSOCUG00000016837)	CCDC28A (ENSOCUG00000010302)	NHSL1 (ENSOCUG00000013429)	HEBP2 (ENSOCUG00000013425)	SMIM28 (ENSOCUG00000038063)	ARFGEF3 (ENSOCUG00000004754)	ENSOCUG00000004238	TNFAIP3 (ENSOCUG00000002310)	OLIG3 (ENSOCUG00000017289)	IFNGR1 (ENSOCUG00000013254)	IL22RA2 (ENSOCUG00000022021)	IL20RA (ENSOCUG00000015696)	SLC35D3 (ENSOCUG00000005418)	PEX7 (ENSOCUG00000005413)	MAP3K5 (ENSOCUG00000015434)	MAP7 (ENSOCUG00000025456) ##22	BCLAF1 (ENSOCUG00000016363) ##23	MTFR2 (ENSOCUG00000023560)	PDE7B (ENSOCUG00000016632)	AHI1 (ENSOCUG00000011645)	MYB (ENSOCUG00000011633)	ENSOCUG00000011619	ALDH8A1 (ENSOCUG00000011613)	SGK1 (ENSOCUG00000014367)	SLC2A12 (ENSOCUG00000007095)	ENSOCUG00000007091	TCF21 (ENSOCUG00000017761)	ENSOCUG00000034819	EYA4 (ENSOCUG00000000635)	ENSOCUG00000001606	SLC18B1 (ENSOCUG00000001601)
Pika	MODERN SPECIES	7626																MAP7 (ENSOPRG00000009239) ##22
Primates	ANCESTRAL SPECIES	5	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT01030000236221	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00950000183163.a.b ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a	ENSGT00940000156674	ENSGT00390000013823.b.c.a.b
Strepsirrhini	ANCESTRAL SPECIES	7	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00950000183163.a.b ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.b.b	ENSGT00940000156674	ENSGT00390000013823.b.c.a.b
Lemuriformes	ANCESTRAL SPECIES	3	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00950000183163.a.b ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.b.b	ENSGT00940000156674	ENSGT00390000013823.b.c.a.b
Mouse lemur	MODERN SPECIES	28	CCDC28A (ENSMICG00000008963)	NHSL1 (ENSMICG00000014027)	HEBP2 (ENSMICG00000032428)	SMIM28 (ENSMICG00000046075)	ARFGEF3 (ENSMICG00000013986)	PERP (ENSMICG00000047745)	TNFAIP3 (ENSMICG00000013965)	ENSMICG00000041427	ENSMICG00000027650	ENSMICG00000044585	IL22RA2 (ENSMICG00000004960)	IL20RA (ENSMICG00000004953)	SLC35D3 (ENSMICG00000046861)	PEX7 (ENSMICG00000004938)	MAP3K5 (ENSMICG00000004915)	MAP7 (ENSMICG00000004905) ##22	BCLAF1 (ENSMICG00000004946) ##23	MTFR2 (ENSMICG00000004940)	PDE7B (ENSMICG00000032302)	AHI1 (ENSMICG00000005541)	MYB (ENSMICG00000005531)	ENSMICG00000001533	ALDH8A1 (ENSMICG00000001527)	SGK1 (ENSMICG00000007886)	SLC2A12 (ENSMICG00000026712)	TBPL1 (ENSMICG00000015740)	TCF21 (ENSMICG00000029994)	EYA4 (ENSMICG00000007846)	RPS12 (ENSMICG00000043038)	SLC18B1 (ENSMICG00000037158)	VNN2 (ENSMICG00000005236)
Lemuriformes_a	ANCESTRAL SPECIES	28	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT00530000064150	ENSGT00530000063484.a.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00950000183163.a.b ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a	ENSGT00940000156674	ENSGT00390000013823.b.c.a.b
Coquerels sifaka	MODERN SPECIES	1046									OLIG3 (ENSPCOG00000005063)	IFNGR1 (ENSPCOG00000001037)	IL22RA2 (ENSPCOG00000016305)	IL20RA (ENSPCOG00000028358)	SLC35D3 (ENSPCOG00000021808)	ENSPCOG00000027911	MAP3K5 (ENSPCOG00000019678)	MAP7 (ENSPCOG00000024639) ##22	BCLAF1 (ENSPCOG00000014683) ##23	MTFR2 (ENSPCOG00000004724)	PDE7B (ENSPCOG00000027152)	ENSPCOG00000018117	MYB (ENSPCOG00000018217)	ENSPCOG00000020390	ALDH8A1 (ENSPCOG00000028699)	ENSPCOG00000000608	ENSPCOG00000006925	SGK1 (ENSPCOG00000021583)	SLC2A12 (ENSPCOG00000024120)	TBPL1 (ENSPCOG00000015682)	TCF21 (ENSPCOG00000028439)	EYA4 (ENSPCOG00000019086)	ENSPCOG00000018473
Greater bamboo lemur	MODERN SPECIES	1107																MAP7 (ENSPSMG00000012847) ##22	BCLAF1 (ENSPSMG00000012569) ##23	MTFR2 (ENSPSMG00000012407)	PDE7B (ENSPSMG00000012399)	AHI1 (ENSPSMG00000012348)	MYB (ENSPSMG00000011509)	HBS1L (ENSPSMG00000010745)	ALDH8A1 (ENSPSMG00000010552)	ENSPSMG00000010526	ENSPSMG00000010518	ENSPSMG00000010511	SGK1 (ENSPSMG00000010165)	SLC2A12 (ENSPSMG00000009995)	TBPL1 (ENSPSMG00000009985)	TCF21 (ENSPSMG00000009967)	ENSPSMG00000009962
Bushbaby	MODERN SPECIES	157	CCDC28A (ENSOGAG00000014575)	NHSL1 (ENSOGAG00000026919)	HEBP2 (ENSOGAG00000005010)	ARFGEF3 (ENSOGAG00000016978)	PERP (ENSOGAG00000011669)	TNFAIP3 (ENSOGAG00000011667)	OLIG3 (ENSOGAG00000011977)	ENSOGAG00000032882	IFNGR1 (ENSOGAG00000006564)	IL22RA2 (ENSOGAG00000006556)	IL20RA (ENSOGAG00000006549)	SLC35D3 (ENSOGAG00000006548)	PEX7 (ENSOGAG00000000560)	ENSOGAG00000030613	MAP3K5 (ENSOGAG00000000556)	MAP7 (ENSOGAG00000009726) ##22	BCLAF1 (ENSOGAG00000009724) ##23	MTFR2 (ENSOGAG00000009721)	ENSOGAG00000025397	ENSOGAG00000024127	PDE7B (ENSOGAG00000009717)	ENSOGAG00000030360	AHI1 (ENSOGAG00000011323)	MYB (ENSOGAG00000000056)	HBS1L (ENSOGAG00000012604)	ALDH8A1 (ENSOGAG00000012602)	ENSOGAG00000028801	ENSOGAG00000029912	SGK1 (ENSOGAG00000008732)	SLC2A12 (ENSOGAG00000034406)	TBPL1 (ENSOGAG00000006622)
Haplorrhini	ANCESTRAL SPECIES	2	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT01030000236221	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00950000183163.a.b ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a	ENSGT00940000156674	ENSGT00390000013823.b.c.a.b
Tarsier	MODERN SPECIES	3511															MAP3K5 (ENSTSYG00000000613)	MAP7 (ENSTSYG00000003705) ##22	BCLAF1 (ENSTSYG00000008161) ##23	ENSTSYG00000035157	PDE7B (ENSTSYG00000004970)
Simiiformes	ANCESTRAL SPECIES	5	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT01030000236221	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00910000146884	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00950000183163.a.b ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a	ENSGT00940000156674	ENSGT00390000013823.b.c.a.b
Platyrrhini	ANCESTRAL SPECIES	2	ENSGT01000000215435	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00910000146884	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00950000183163.a.b ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00390000005830.u	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.b.b	ENSGT00940000156674
Cebidae	ANCESTRAL SPECIES	5	ENSGT01000000215435	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00910000146884	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00950000183163.a.b ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00390000005830.u	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a	ENSGT00940000156674
Cebidae_a	ANCESTRAL SPECIES	26	ENSGT01000000215435	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00910000146884	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00950000183163.a.b ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00390000005830.u	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00390000014722.d	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a
Bolivian squirrel monkey	MODERN SPECIES	91												IL20RA (ENSSBOG00000030873)	SLC35D3 (ENSSBOG00000028578)	PEX7 (ENSSBOG00000029138)	MAP3K5 (ENSSBOG00000031833)	MAP7 (ENSSBOG00000035407) ##22	ENSSBOG00000000077	BCLAF1 (ENSSBOG00000033973) ##23	MTFR2 (ENSSBOG00000019957)	PDE7B (ENSSBOG00000027341)	AHI1 (ENSSBOG00000035373)	MYB (ENSSBOG00000028999)	ENSSBOG00000033605	ENSSBOG00000019696	ALDH8A1 (ENSSBOG00000003193)	SGK1 (ENSSBOG00000033468)	SLC2A12 (ENSSBOG00000023577)	TBPL1 (ENSSBOG00000022803)	TCF21 (ENSSBOG00000034676)	ENSSBOG00000024565	EYA4 (ENSSBOG00000029920)
Capuchin	MODERN SPECIES	65	NHSL1 (ENSCCAG00000021733)	HEBP2 (ENSCCAG00000022742)	SMIM28 (ENSCCAG00000022535)	ARFGEF3 (ENSCCAG00000022363)	PERP (ENSCCAG00000024325)	TNFAIP3 (ENSCCAG00000026453)	ENSCCAG00000022443	OLIG3 (ENSCCAG00000032329)	IFNGR1 (ENSCCAG00000028495)	IL22RA2 (ENSCCAG00000028239)	IL20RA (ENSCCAG00000028945)	ENSCCAG00000024812	SLC35D3 (ENSCCAG00000034349)	PEX7 (ENSCCAG00000037288)	MAP3K5 (ENSCCAG00000019841)	MAP7 (ENSCCAG00000021966) ##22	BCLAF1 (ENSCCAG00000032457) ##23	MTFR2 (ENSCCAG00000027036)	PDE7B (ENSCCAG00000036216)
Marmoset	MODERN SPECIES	16	ARFGEF3 (ENSCJAG00000019028)	PERP (ENSCJAG00000045509)	TNFAIP3 (ENSCJAG00000019019)	OLIG3 (ENSCJAG00000019011)	ENSCJAG00000085578	ENSCJAG00000084731	ENSCJAG00000076925	IFNGR1 (ENSCJAG00000069510)	IL22RA2 (ENSCJAG00000018991)	IL20RA (ENSCJAG00000018982)	ENSCJAG00000078995	SLC35D3 (ENSCJAG00000008524)	PEX7 (ENSCJAG00000008514)	ENSCJAG00000078792	MAP3K5 (ENSCJAG00000008383)	MAP7 (ENSCJAG00000008294) ##22	ENSCJAG00000071860	BCLAF1 (ENSCJAG00000008200) ##23	MTFR2 (ENSCJAG00000008189)	PDE7B (ENSCJAG00000008164)	ENSCJAG00000070725	ENSCJAG00000074971	AHI1 (ENSCJAG00000008068)	ENSCJAG00000071466	MYB (ENSCJAG00000007798)	ENSCJAG00000080967	HBS1L (ENSCJAG00000007678)	ALDH8A1 (ENSCJAG00000007652)	ENSCJAG00000082917	SGK1 (ENSCJAG00000002727)	SLC2A12 (ENSCJAG00000038249)
Mas night monkey	MODERN SPECIES	506	NHSL1 (ENSANAG00000034706)	HEBP2 (ENSANAG00000030822)	SMIM28 (ENSANAG00000033494)	ARFGEF3 (ENSANAG00000034514)	ENSANAG00000019730	PERP (ENSANAG00000036824)	TNFAIP3 (ENSANAG00000029324)	ENSANAG00000000023	OLIG3 (ENSANAG00000019677)	IFNGR1 (ENSANAG00000022563)	IL22RA2 (ENSANAG00000034970)	IL20RA (ENSANAG00000032920)	SLC35D3 (ENSANAG00000021760)	PEX7 (ENSANAG00000022204)	MAP3K5 (ENSANAG00000037690)	MAP7 (ENSANAG00000022874) ##22	BCLAF1 (ENSANAG00000035003) ##23	MTFR2 (ENSANAG00000023880)	PDE7B (ENSANAG00000033089)	AHI1 (ENSANAG00000028946)	MYB (ENSANAG00000026941)	ENSANAG00000030478	HBS1L (ENSANAG00000038076)	ALDH8A1 (ENSANAG00000026843)	SGK1 (ENSANAG00000036955)	SLC2A12 (ENSANAG00000026241)	TBPL1 (ENSANAG00000033371)	TCF21 (ENSANAG00000021568)	EYA4 (ENSANAG00000023112)	RPS12 (ENSANAG00000030986)	SLC18B1 (ENSANAG00000026852)
Catarrhini	ANCESTRAL SPECIES	5	ENSGT00740000116829	ENSGT01030000236221	ENSGT00530000064150	ENSGT00530000063484.a.c	ENSGT00940000158448	ENSGT00940000153876.B.i	ENSGT00940000154296.jb.b	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00910000146884	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00950000183163.a.b.c ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a	ENSGT00940000156674	ENSGT00390000013823.b.c.a.b
Hominoidea	ANCESTRAL SPECIES	4	ENSGT00740000116829	ENSGT01030000236221	ENSGT00530000064150	ENSGT00530000063484.a.c	ENSGT00940000158448	ENSGT00940000153876.B.i	ENSGT00940000154296.jb.b	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00910000146884	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00950000183163.a.b.c ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a	ENSGT00940000156674	ENSGT00390000013823.b.c.a.b
Gibbon	MODERN SPECIES	18	HEBP2 (ENSNLEG00000014957)	SMIM28 (ENSNLEG00000030167)	ARFGEF3 (ENSNLEG00000014937)	PERP (ENSNLEG00000027370)	TNFAIP3 (ENSNLEG00000014913)	ENSNLEG00000035766	ENSNLEG00000030456	OLIG3 (ENSNLEG00000019305)	IFNGR1 (ENSNLEG00000035902)	IL22RA2 (ENSNLEG00000014887)	IL20RA (ENSNLEG00000014884)	ENSNLEG00000027846	SLC35D3 (ENSNLEG00000014882)	PEX7 (ENSNLEG00000014868)	MAP3K5 (ENSNLEG00000014849)	MAP7 (ENSNLEG00000014807) ##22	BCLAF1 (ENSNLEG00000014796) ##23	MTFR2 (ENSNLEG00000014793)	PDE7B (ENSNLEG00000014787)	AHI1 (ENSNLEG00000014767)	MYB (ENSNLEG00000014751)	HBS1L (ENSNLEG00000014721)	ALDH8A1 (ENSNLEG00000014713)	ENSNLEG00000032917	ENSNLEG00000033209	SGK1 (ENSNLEG00000014679)	SLC2A12 (ENSNLEG00000014667)	TBPL1 (ENSNLEG00000014649)	TCF21 (ENSNLEG00000031050)	EYA4 (ENSNLEG00000014613)	ENSNLEG00000014611
Hominidae	ANCESTRAL SPECIES	5	ENSGT00740000116829	ENSGT01030000236221	ENSGT00530000064150	ENSGT00530000063484.a.c	ENSGT00940000158448	ENSGT00940000153876.B.i	ENSGT00940000154296.jb.b	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00910000146884	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00950000183163.a.b.c ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a	ENSGT00940000156674	ENSGT00390000013823.b.c.a.b
Orangutan	MODERN SPECIES	19	NHSL1 (ENSPPYG00000017276)	HEBP2 (ENSPPYG00000038470)	SMIM28 (ENSPPYG00000036885)	ENSPPYG00000033081	ENSPPYG00000017045	ARFGEF3 (ENSPPYG00000017044)	PERP (ENSPPYG00000017043)	TNFAIP3 (ENSPPYG00000017042)	OLIG3 (ENSPPYG00000017041)	IFNGR1 (ENSPPYG00000017039)	IL22RA2 (ENSPPYG00000017038)	IL20RA (ENSPPYG00000017037)	SLC35D3 (ENSPPYG00000017036)	PEX7 (ENSPPYG00000017035)	MAP3K5 (ENSPPYG00000017034)	MAP7 (ENSPPYG00000017033) ##22	BCLAF1 (ENSPPYG00000017032) ##23	MTFR2 (ENSPPYG00000017031)	ENSPPYG00000033561	PDE7B (ENSPPYG00000017030)	AHI1 (ENSPPYG00000017029)	MYB (ENSPPYG00000017028)	HBS1L (ENSPPYG00000017027)	ALDH8A1 (ENSPPYG00000017026)	SGK1 (ENSPPYG00000017025)	SLC2A12 (ENSPPYG00000017024)	TBPL1 (ENSPPYG00000017023)	TCF21 (ENSPPYG00000017022)	EYA4 (ENSPPYG00000017021)	ENSPPYG00000017020	SLC18B1 (ENSPPYG00000017019)
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	4	ENSGT00740000116829	ENSGT01030000236221	ENSGT00530000064150	ENSGT00530000063484.a.c	ENSGT00940000158448	ENSGT00940000153876.B.i	ENSGT00940000154296.jb.b	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00910000146884	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00950000183163.a.b.c ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.b.b	ENSGT00940000156674	ENSGT00390000013823.b.c.a.b
Gorilla	MODERN SPECIES	19	ENSGGOG00000023464	ARFGEF3 (ENSGGOG00000002348)	PERP (ENSGGOG00000038896)	TNFAIP3 (ENSGGOG00000003334)	ENSGGOG00000022605	ENSGGOG00000024367	OLIG3 (ENSGGOG00000001516)	IFNGR1 (ENSGGOG00000008510)	IL22RA2 (ENSGGOG00000010283)	IL20RA (ENSGGOG00000000380)	ENSGGOG00000042378	SLC35D3 (ENSGGOG00000010995)	PEX7 (ENSGGOG00000002773)	MAP3K5 (ENSGGOG00000015494)	ENSGGOG00000040634	MAP7 (ENSGGOG00000000974) ##22	BCLAF1 (ENSGGOG00000001824) ##23	MTFR2 (ENSGGOG00000009002)	PDE7B (ENSGGOG00000014471)	AHI1 (ENSGGOG00000001202)	MYB (ENSGGOG00000001379)	ENSGGOG00000034956	ALDH8A1 (ENSGGOG00000015693)	ENSGGOG00000013861	SGK1 (ENSGGOG00000001495)	SLC2A12 (ENSGGOG00000013187)	TBPL1 (ENSGGOG00000028298)	TCF21 (ENSGGOG00000005460)	EYA4 (ENSGGOG00000013499)	ENSGGOG00000012234	SLC18B1 (ENSGGOG00000007215)
Homo/Pan group	ANCESTRAL SPECIES	5	ENSGT00740000116829	ENSGT01030000236221	ENSGT00530000064150	ENSGT00530000063484.a.c	ENSGT00940000158448	ENSGT00940000153876.B.i	ENSGT00940000154296.jb.b	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00910000146884	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00950000183163.a.b.c ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.b.b	ENSGT00940000156674	ENSGT00390000013823.b.c.a.b
Human	MODERN SPECIES	18	CCDC28A (ENSG00000024862)	NHSL1 (ENSG00000135540)	HEBP2 (ENSG00000051620)	SMIM28 (ENSG00000262543)	PBOV1 (ENSG00000254440)	ARFGEF3 (ENSG00000112379)	PERP (ENSG00000112378)	TNFAIP3 (ENSG00000118503)	OLIG3 (ENSG00000177468)	IFNGR1 (ENSG00000027697)	IL22RA2 (ENSG00000164485)	IL20RA (ENSG00000016402)	SLC35D3 (ENSG00000182747)	PEX7 (ENSG00000112357)	MAP3K5 (ENSG00000197442)	MAP7 (ENSG00000135525) ##22	BCLAF1 (ENSG00000029363) ##23	MTFR2 (ENSG00000146410)	PDE7B (ENSG00000171408)	AHI1 (ENSG00000135541)	MYB (ENSG00000118513)	HBS1L (ENSG00000112339)	ALDH8A1 (ENSG00000118514)	SGK1 (ENSG00000118515)	SLC2A12 (ENSG00000146411)	ENSG00000288529	TBPL1 (ENSG00000028839)	TCF21 (ENSG00000118526)	EYA4 (ENSG00000112319)	RPS12 (ENSG00000112306)	SLC18B1 (ENSG00000146409)
Pan	ANCESTRAL SPECIES	5	ENSGT00740000116829	ENSGT01030000236221	ENSGT00530000064150	ENSGT00530000063484.a.c	ENSGT00940000158448	ENSGT00940000153876.B.i	ENSGT00940000154296.jb.b	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00910000146884	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00950000183163.a.b.c ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00390000006408	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a	ENSGT00940000156674
Chimpanzee	MODERN SPECIES	19	ENSPTRG00000051720	ARFGEF3 (ENSPTRG00000018647)	PERP (ENSPTRG00000050751)	TNFAIP3 (ENSPTRG00000018644)	ENSPTRG00000047083	ENSPTRG00000044157	OLIG3 (ENSPTRG00000018643)	IFNGR1 (ENSPTRG00000018642)	IL22RA2 (ENSPTRG00000018641)	IL20RA (ENSPTRG00000018640)	ENSPTRG00000047595	SLC35D3 (ENSPTRG00000018639)	PEX7 (ENSPTRG00000018638)	MAP3K5 (ENSPTRG00000024326)	ENSPTRG00000049539	MAP7 (ENSPTRG00000018636) ##22	BCLAF1 (ENSPTRG00000018635) ##23	MTFR2 (ENSPTRG00000018634)	PDE7B (ENSPTRG00000018633)	AHI1 (ENSPTRG00000018632)	MYB (ENSPTRG00000018631)	HBS1L (ENSPTRG00000018630)	ALDH8A1 (ENSPTRG00000018629)	ENSPTRG00000052017	SGK1 (ENSPTRG00000018626)	SLC2A12 (ENSPTRG00000018625)	TBPL1 (ENSPTRG00000018624)	TCF21 (ENSPTRG00000018622)	EYA4 (ENSPTRG00000018619)	RPS12 (ENSPTRG00000018618)	SLC18B1 (ENSPTRG00000018616)
Bonobo	MODERN SPECIES	19	ENSPPAG00000041536	ENSPPAG00000007696	ARFGEF3 (ENSPPAG00000036773)	PERP (ENSPPAG00000039047)	TNFAIP3 (ENSPPAG00000034373)	ENSPPAG00000035158	ENSPPAG00000043546	OLIG3 (ENSPPAG00000020831)	IFNGR1 (ENSPPAG00000032456)	IL22RA2 (ENSPPAG00000042425)	IL20RA (ENSPPAG00000027630)	ENSPPAG00000025437	SLC35D3 (ENSPPAG00000030162)	PEX7 (ENSPPAG00000029707)	MAP3K5 (ENSPPAG00000040503)	ENSPPAG00000027909 ##22	BCLAF1 (ENSPPAG00000031645) ##23	MTFR2 (ENSPPAG00000040848)	PDE7B (ENSPPAG00000036569)	AHI1 (ENSPPAG00000032074)	MYB (ENSPPAG00000031909)	HBS1L (ENSPPAG00000029900)	ALDH8A1 (ENSPPAG00000029690)	ENSPPAG00000036170	SGK1 (ENSPPAG00000042387)	SLC2A12 (ENSPPAG00000030981)	TBPL1 (ENSPPAG00000018633)	TCF21 (ENSPPAG00000043261)	EYA4 (ENSPPAG00000027539)	RPS12 (ENSPPAG00000043270)	SLC18B1 (ENSPPAG00000041802)
Cercopithecidae	ANCESTRAL SPECIES	4	ENSGT00740000116829	ENSGT00390000009242	ENSGT00530000064150	ENSGT00530000063484.a.c	ENSGT00940000158448	ENSGT00940000153876.B.i	ENSGT00940000154296.jb.b	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00910000146884	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00950000183163.a.b.c ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a	ENSGT00940000156674	ENSGT00390000013823.b.c.a.b
Cercopithecinae	ANCESTRAL SPECIES	6	ENSGT00740000116829	ENSGT00390000009242	ENSGT00530000064150	ENSGT00530000063484.a.c	ENSGT00940000158448	ENSGT00940000153876.B.i	ENSGT00940000154296.jb.b	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00910000146884	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00950000183163.a.b.c ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00390000002732.n.s.a	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.v	ENSGT00940000156674
Cercopithecinae_a	ANCESTRAL SPECIES	6	ENSGT00740000116829	ENSGT00390000009242	ENSGT00530000064150	ENSGT00530000063484.a.c	ENSGT00940000158448	ENSGT00940000153876.B.i	ENSGT00940000154296.jb.b	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00910000146884	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00950000183163.a.b.c ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00390000002732.n.s.a	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a	ENSGT00940000156674
Cercopithecinae_b	ANCESTRAL SPECIES	17	ENSGT00940000160412	ENSGT00740000116829	ENSGT00530000064150	ENSGT00530000063484.a.c	ENSGT00940000158448	ENSGT00940000153876.B.i	ENSGT00940000154296.jb.b	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00910000146884	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00950000183163.a.b.c ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00390000002732.n.s.a	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.v	ENSGT00940000156674
Cercopithecinae_d	ANCESTRAL SPECIES	73	ENSGT00940000160412	ENSGT00740000116829	ENSGT00530000064150	ENSGT00530000063484.a.c	ENSGT00940000158448	ENSGT00940000153876.B.i	ENSGT00940000154296.jb.b	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00910000146884	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00950000183163.a.b.c ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.v	ENSGT00940000156674	ENSGT00390000013823.b.c.a.b
Drill	MODERN SPECIES	733	NHSL1 (ENSMLEG00000030062)	HEBP2 (ENSMLEG00000038686)	SMIM28 (ENSMLEG00000030662)	ARFGEF3 (ENSMLEG00000030098)	PERP (ENSMLEG00000038902)	TNFAIP3 (ENSMLEG00000024974)	ENSMLEG00000038362	ENSMLEG00000032539	IFNGR1 (ENSMLEG00000029276)	IL22RA2 (ENSMLEG00000034712)	IL20RA (ENSMLEG00000036693)	ENSMLEG00000029751	SLC35D3 (ENSMLEG00000041255)	PEX7 (ENSMLEG00000030496)	MAP3K5 (ENSMLEG00000044142)	MAP7 (ENSMLEG00000041309) ##22	BCLAF1 (ENSMLEG00000029438) ##23	MTFR2 (ENSMLEG00000025670)	PDE7B (ENSMLEG00000038045)
Sooty mangabey	MODERN SPECIES	324	HEBP2 (ENSCATG00000031632)	SMIM28 (ENSCATG00000044781)	ARFGEF3 (ENSCATG00000039507)	ENSCATG00000042163	TNFAIP3 (ENSCATG00000041434)	ENSCATG00000044693	ENSCATG00000041894	OLIG3 (ENSCATG00000015711)	IFNGR1 (ENSCATG00000037440)	IL22RA2 (ENSCATG00000031043)	IL20RA (ENSCATG00000037479)	ENSCATG00000043504	SLC35D3 (ENSCATG00000029391)	PEX7 (ENSCATG00000030986)	MAP3K5 (ENSCATG00000017514)	MAP7 (ENSCATG00000041354) ##22	BCLAF1 (ENSCATG00000018862) ##23	MTFR2 (ENSCATG00000029871)	PDE7B (ENSCATG00000039515)	AHI1 (ENSCATG00000017191)	ENSCATG00000039064	MYB (ENSCATG00000029830)	HBS1L (ENSCATG00000043042)	ALDH8A1 (ENSCATG00000045306)	ENSCATG00000043694	SGK1 (ENSCATG00000044319)	SLC2A12 (ENSCATG00000010423)	TBPL1 (ENSCATG00000045200)	TCF21 (ENSCATG00000037198)	EYA4 (ENSCATG00000043182)	ENSCATG00000036985
Olive baboon	MODERN SPECIES	16	HEBP2 (ENSPANG00000023967)	SMIM28 (ENSPANG00000021828)	ENSPANG00000031978	ARFGEF3 (ENSPANG00000013002)	PERP (ENSPANG00000006095)	TNFAIP3 (ENSPANG00000007076)	OLIG3 (ENSPANG00000006465)	IFNGR1 (ENSPANG00000018173)	IL22RA2 (ENSPANG00000000356)	ENSPANG00000039384	IL20RA (ENSPANG00000017634)	ENSPANG00000033937	SLC35D3 (ENSPANG00000005133)	PEX7 (ENSPANG00000023965)	MAP3K5 (ENSPANG00000015068)	MAP7 (ENSPANG00000016952) ##22	ENSPANG00000047396	BCLAF1 (ENSPANG00000022182) ##23	MTFR2 (ENSPANG00000014438)	PDE7B (ENSPANG00000015851)	AHI1 (ENSPANG00000008061)	ENSPANG00000033626	MYB (ENSPANG00000018932)	HBS1L (ENSPANG00000007075)	ALDH8A1 (ENSPANG00000022180)	ENSPANG00000047724	SGK1 (ENSPANG00000010260)	SLC2A12 (ENSPANG00000022519)	TBPL1 (ENSPANG00000020089)	ENSPANG00000041421	TCF21 (ENSPANG00000037480)
Macaca	ANCESTRAL SPECIES	9	ENSGT00740000116829	ENSGT00390000009242	ENSGT00530000064150	ENSGT00530000063484.a.c	ENSGT00940000158448	ENSGT00940000153876.B.i	ENSGT00940000154296.jb.b	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00910000146884	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00950000183163.a.b.c ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00390000002732.n.s.a	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a	ENSGT00940000156674
Macaca_a	ANCESTRAL SPECIES	9	ENSGT00500000044870.a	ENSGT01000000215435	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00740000116829	ENSGT00530000064150	ENSGT00530000063484.a.c	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00950000183163.a.b.c ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00390000002732.n.s.a	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT01100000263539.b.a.a.a.a.a.b.a.a.a.a.b	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a
Crab-eating macaque	MODERN SPECIES	14	PERP (ENSMFAG00000054526)	ENSMFAG00000063857	ENSMFAG00000047571	TNFAIP3 (ENSMFAG00000000326)	ENSMFAG00000039282	ENSMFAG00000051130	OLIG3 (ENSMFAG00000027435)	ENSMFAG00000054860	IFNGR1 (ENSMFAG00000003984)	IL22RA2 (ENSMFAG00000030047)	ENSMFAG00000053800	IL20RA (ENSMFAG00000030911)	SLC35D3 (ENSMFAG00000036990)	PEX7 (ENSMFAG00000036835)	MAP3K5 (ENSMFAG00000040944)	MAP7 (ENSMFAG00000042781) ##22	BCLAF1 (ENSMFAG00000039754) ##23	MTFR2 (ENSMFAG00000038742)	PDE7B (ENSMFAG00000032923)	ENSMFAG00000065391	ENSMFAG00000007648	AHI1 (ENSMFAG00000033411)	MYB (ENSMFAG00000036535)	HBS1L (ENSMFAG00000003766)	ALDH8A1 (ENSMFAG00000037548)	ENSMFAG00000055793	SGK1 (ENSMFAG00000037310)	SLC2A12 (ENSMFAG00000002658)	TBPL1 (ENSMFAG00000040137)	TCF21 (ENSMFAG00000060473)	EYA4 (ENSMFAG00000037522)
Rhesus	MODERN SPECIES	14	ENSMMUG00000061523	NHSL1 (ENSMMUG00000000123)	HEBP2 (ENSMMUG00000000122)	SMIM28 (ENSMMUG00000059337)	ARFGEF3 (ENSMMUG00000019927)	PERP (ENSMMUG00000049387)	TNFAIP3 (ENSMMUG00000008869)	OLIG3 (ENSMMUG00000047350)	IFNGR1 (ENSMMUG00000062426)	IL22RA2 (ENSMMUG00000013562)	ENSMMUG00000062792	IL20RA (ENSMMUG00000013566)	SLC35D3 (ENSMMUG00000055984)	PEX7 (ENSMMUG00000016382)	MAP3K5 (ENSMMUG00000016376)	MAP7 (ENSMMUG00000016373) ##22	BCLAF1 (ENSMMUG00000003710) ##23	MTFR2 (ENSMMUG00000003709)	PDE7B (ENSMMUG00000003708)	ENSMMUG00000053328	ENSMMUG00000044284	AHI1 (ENSMMUG00000009368)	MYB (ENSMMUG00000018166)	HBS1L (ENSMMUG00000004802)	ENSMMUG00000061139	ENSMMUG00000053927	SGK1 (ENSMMUG00000008140)	ENSMMUG00000061787	SLC2A12 (ENSMMUG00000022921)	TBPL1 (ENSMMUG00000022920)	TCF21 (ENSMMUG00000064455)
Pig-tailed macaque	MODERN SPECIES	342	SMIM28 (ENSMNEG00000043460)	PBOV1 (ENSMNEG00000032976)	ARFGEF3 (ENSMNEG00000037585)	PERP (ENSMNEG00000038554)	TNFAIP3 (ENSMNEG00000036248)	ENSMNEG00000037249	ENSMNEG00000042980	OLIG3 (ENSMNEG00000019943)	IFNGR1 (ENSMNEG00000042601)	IL22RA2 (ENSMNEG00000032299)	IL20RA (ENSMNEG00000042534)	ENSMNEG00000038998	SLC35D3 (ENSMNEG00000023233)	PEX7 (ENSMNEG00000043251)	MAP3K5 (ENSMNEG00000043079)	MAP7 (ENSMNEG00000042032) ##22	BCLAF1 (ENSMNEG00000035970) ##23	MTFR2 (ENSMNEG00000039364)	PDE7B (ENSMNEG00000040328)	AHI1 (ENSMNEG00000010215)	MYB (ENSMNEG00000042074)	HBS1L (ENSMNEG00000043942)	ALDH8A1 (ENSMNEG00000044833)	ENSMNEG00000041599	SGK1 (ENSMNEG00000031699)	SLC2A12 (ENSMNEG00000040633)	TBPL1 (ENSMNEG00000027053)	TCF21 (ENSMNEG00000008781)	EYA4 (ENSMNEG00000045456)	ENSMNEG00000040181	SLC18B1 (ENSMNEG00000034054)
Vervet Monkey	MODERN SPECIES	4	CCDC28A (ENSCSAG00000017014)	NHSL1 (ENSCSAG00000017011)	HEBP2 (ENSCSAG00000017008)	SMIM28 (ENSCSAG00000017006)	ARFGEF3 (ENSCSAG00000016997)	PERP (ENSCSAG00000016948)	TNFAIP3 (ENSCSAG00000016944)	ENSCSAG00000016938	OLIG3 (ENSCSAG00000000185)	IFNGR1 (ENSCSAG00000016936)	IL22RA2 (ENSCSAG00000016931)	IL20RA (ENSCSAG00000016925)	SLC35D3 (ENSCSAG00000016900)	PEX7 (ENSCSAG00000016896)	MAP3K5 (ENSCSAG00000016892)	MAP7 (ENSCSAG00000016880) ##22	BCLAF1 (ENSCSAG00000016867) ##23	MTFR2 (ENSCSAG00000016854)	PDE7B (ENSCSAG00000016849)	AHI1 (ENSCSAG00000016829)	ENSCSAG00000016818	MYB (ENSCSAG00000016815)	HBS1L (ENSCSAG00000016791)	ALDH8A1 (ENSCSAG00000016740)	ENSCSAG00000016735	SGK1 (ENSCSAG00000016730)	SLC2A12 (ENSCSAG00000016714)	TBPL1 (ENSCSAG00000016709)	TCF21 (ENSCSAG00000016705)	EYA4 (ENSCSAG00000016701)	ENSCSAG00000016696
Rhinopithecus	ANCESTRAL SPECIES	92	ENSGT00740000116829	ENSGT00530000064150	ENSGT00530000063484.a.c	ENSGT00940000158448	ENSGT00940000154900.e.d.b	ENSGT00940000153876.B.i	ENSGT00940000154296.jb.b	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000161124	ENSGT00940000157314.A	ENSGT00910000146884	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00950000183163.a.b.c ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318.u.a	ENSGT00390000018318.u.b.b	ENSGT00940000156674
Golden snub-nosed monkey	MODERN SPECIES	2152	ARFGEF3 (ENSRROG00000030285)	PERP (ENSRROG00000034877)	TNFAIP3 (ENSRROG00000041571)	ENSRROG00000041456	ENSRROG00000041568	ENSRROG00000036262	OLIG3 (ENSRROG00000019602)	IFNGR1 (ENSRROG00000035100)	IL22RA2 (ENSRROG00000002783)	IL20RA (ENSRROG00000007730)	ENSRROG00000038139	SLC35D3 (ENSRROG00000035626)	PEX7 (ENSRROG00000036829)	MAP3K5 (ENSRROG00000031252)	ENSRROG00000013913	MAP7 (ENSRROG00000017668) ##22	BCLAF1 (ENSRROG00000040259) ##23	MTFR2 (ENSRROG00000034463)	PDE7B (ENSRROG00000044535)
Black snub-nosed monkey	MODERN SPECIES	2496																ENSRBIG00000032034 ##22	BCLAF1 (ENSRBIG00000029072) ##23	MTFR2 (ENSRBIG00000028360)
Platypus	MODERN SPECIES	11	ECT2L (ENSOANG00000014805)	CCDC28A (ENSOANG00000014803)	NHSL1 (ENSOANG00000020185)	HEBP2 (ENSOANG00000049313)	SMIM28 (ENSOANG00000036691)	ARFGEF3 (ENSOANG00000014799)	PERP (ENSOANG00000047720)	TNFAIP3 (ENSOANG00000014797)	OLIG3 (ENSOANG00000014796)	ENSOANG00000050067	ENSOANG00000005256	IL20RA (ENSOANG00000005257)	SLC35D3 (ENSOANG00000005259)	PEX7 (ENSOANG00000011627)	MAP3K5 (ENSOANG00000009449)	MAP7 (ENSOANG00000009448) ##22	BCLAF1 (ENSOANG00000009444) ##23	ENSOANG00000009443	MTFR2 (ENSOANG00000009442)	PDE7B (ENSOANG00000009441)	AHI1 (ENSOANG00000031640)	MYB (ENSOANG00000002777)	HBS1L (ENSOANG00000002684)	ALDH8A1 (ENSOANG00000051194)	SGK1 (ENSOANG00000013095)	SLC2A12 (ENSOANG00000013096)	TBPL1 (ENSOANG00000013097)	TCF21 (ENSOANG00000013098)	EYA4 (ENSOANG00000001885)	RPS12 (ENSOANG00000001886)	SLC18B1 (ENSOANG00000022303)
Anura	ANCESTRAL SPECIES	40	ENSGT00470000042287	ENSGT00940000158749	ENSGT00940000158839	ENSGT00500000044870.a	ENSGT00950000182963.a.a	ENSGT00940000160412	ENSGT00530000064150	ENSGT00530000063484.a	ENSGT00940000158448	ENSGT00940000160850	ENSGT00510000048929	ENSGT00940000157314.A	ENSGT00940000160083	ENSGT00940000157264	ENSGT00940000159155	ENSGT00950000182941.a.a.a ##22	ENSGT00940000167949.a	ENSGT00950000183163.a.b ##23	ENSGT00950000183215.c.a.a	ENSGT00940000159413	ENSGT00940000156509	ENSGT00940000156248	ENSGT00940000156274	ENSGT00940000156799	ENSGT00940000164496	ENSGT00940000155726	ENSGT00940000159614	ENSGT00940000155712	ENSGT00940000160174	ENSGT00950000182978.A.a.a	ENSGT00390000018318
Frog	MODERN SPECIES	5	ENSXETG00000037855	ENSXETG00000046431	map3k4 (ENSXETG00000031800)	XB5956456 [provisional] (ENSXETG00000030468)	mrps36 (ENSXETG00000027658)	ENSXETG00000049241	ENSXETG00000043848	sash1 (ENSXETG00000010717)	ENSXETG00000041422	ust (ENSXETG00000040210)	ENSXETG00000037949	ENSXETG00000048390	ENSXETG00000045567	map3k5 (ENSXETG00000002476)	ENSXETG00000042360	map7 (ENSXETG00000002479) ##22	ENSXETG00000045148	ENSXETG00000040976	ENSXETG00000037653	bclaf1 (ENSXETG00000033794) ##23	pex7 (ENSXETG00000027656)	ENSXETG00000042216	nup43 (ENSXETG00000016373)	lats1 (ENSXETG00000012033)	ENSXETG00000047262	ppil4 (ENSXETG00000021382)	ENSXETG00000040965	tab2 (ENSXETG00000021389)	sf3b5 (ENSXETG00000044607)	exoc8 (ENSXETG00000021410)	tsnax (ENSXETG00000026152)
Leishan spiny toad	MODERN SPECIES	7	ENSLLEG00000025600	ENSLLEG00000025618	OLIG3 (ENSLLEG00000025632)	ENSLLEG00000025653	ENSLLEG00000025754	ENSLLEG00000025771	ENSLLEG00000025779	ENSLLEG00000025827	ENSLLEG00000026040	SLC35D3 (ENSLLEG00000026167)	ENSLLEG00000026200	PEX7 (ENSLLEG00000026217)	ENSLLEG00000026340	ENSLLEG00000026365	MAP3K5 (ENSLLEG00000026418)	MAP7 (ENSLLEG00000026922) ##22	ENSLLEG00000027316	BCLAF1 (ENSLLEG00000027482) ##23	MTFR2 (ENSLLEG00000027567)	ENSLLEG00000027680	ENSLLEG00000027702	MYB (ENSLLEG00000027735)	ENSLLEG00000027841	ALDH8A1 (ENSLLEG00000027952)	ENSLLEG00000005050	TBPL1 (ENSLLEG00000005117)	ENSLLEG00000005130	ENSLLEG00000005139	ERO1B (ENSLLEG00000005181)	GPR137B (ENSLLEG00000005265)	ENSLLEG00000005311
Coelacanth	MODERN SPECIES	1782																MAP7 (ENSLACG00000001292) ##22	BCLAF1 (ENSLACG00000006728) ##23	armc1l (ENSLACG00000008097)	ENSLACG00000022165	PDE7B (ENSLACG00000009480)