Amniota ANCESTRAL SPECIES 48 ENSGT00940000161397 #15 ENSGT00940000162502 ENSGT00530000063484.b.a ENSGT00390000000360 #9 ENSGT00390000006885 #8 ENSGT00390000012647 ENSGT00940000154783 ENSGT00940000160294 ENSGT00940000158744 ENSGT00510000047092 ENSGT00530000063582.a #18 ENSGT00950000183055.a.b #21 ENSGT00940000165106 ENSGT01100000263512.a.a.a.a ENSGT00550000075160 ENSGT00510000047733 #22 ENSGT00390000017860.a.a ENSGT00530000063872.A ENSGT00940000158229 ENSGT00940000157209.jb ENSGT00390000003706.a.b.a ENSGT00390000015364.a.b.a ENSGT00390000015364.a.b.b ENSGT00390000015700.b ENSGT00940000153941.a.b ENSGT00940000166719 ENSGT00940000163673 ENSGT00940000164016 ENSGT00940000161062 ENSGT00510000046908.b ENSGT01030000234752 Mammalia ANCESTRAL SPECIES 54 ENSGT00940000161397 #15 ENSGT00940000162502 ENSGT00530000063484.b.a ENSGT00390000000360 #9 ENSGT00390000006885.a #8 ENSGT00390000012647 ENSGT00940000154783 ENSGT00940000160294 ENSGT00940000158744 ENSGT00510000047092 ENSGT00530000063582.a #18 ENSGT00950000183055.a.b #21 ENSGT00940000165106 ENSGT01100000263512.a.a.a.a ENSGT00550000075160 ENSGT00510000047733 #22 ENSGT00390000017860.a.a ENSGT00530000063872.A ENSGT00940000158229 ENSGT00940000157209.jb ENSGT00390000003706.a.b.a ENSGT00390000015364.a.b.a ENSGT00390000015364.a.b.b ENSGT00390000015700.b ENSGT00940000153941.a.b ENSGT00940000166719 ENSGT00940000163673 ENSGT00940000164016 ENSGT00940000161062 ENSGT00510000046908.b ENSGT01030000234752 Theria ANCESTRAL SPECIES 34 ENSGT00530000063582.a #18 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 ENSGT00390000017860.a.a ENSGT00530000063872.A ENSGT00940000158229 ENSGT00940000157209.jb ENSGT00940000164188 ENSGT00940000159444 ENSGT00940000161201 ENSGT00940000155374 ENSGT00940000160946 ENSGT00940000164304 ENSGT00390000017980 ENSGT00940000160515 ENSGT00940000153299.d ENSGT00940000154344.a ENSGT00940000153669.b Eutheria ANCESTRAL SPECIES 16 ENSGT00940000158744 ENSGT00390000005685 ENSGT00390000016992 #17 ENSGT00940000160294 ENSGT00940000154783 ENSGT00390000012647 ENSGT00390000006885.a #8 ENSGT00390000000360 #9 ENSGT00950000183068.a.a #12 ENSGT00390000018904 #13 ENSGT00940000158132 #14 ENSGT00940000161397 #15 ENSGT00940000163020 #16 ENSGT00530000063582.a #18 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 ENSGT00530000063872.A ENSGT00940000158229 ENSGT00940000155935 ENSGT00940000162167 ENSGT00940000164188 ENSGT00940000159444 ENSGT00940000154972 ENSGT00940000161201 ENSGT00940000155374 ENSGT00390000006832 ENSGT00940000160946 ENSGT00390000017980 ENSGT00940000160515 ENSGT00940000153299.d ENSGT00940000154344.a Boreoeutheria ANCESTRAL SPECIES 11 ENSGT00940000160294 ENSGT00940000154783.e.b ENSGT00940000163020 #16 ENSGT00390000016992 #17 ENSGT00940000154783.f ENSGT00390000012647 ENSGT00390000006885.a #8 ENSGT00390000000360.r ##9 ENSGT00950000183068.a.a #12 ENSGT00390000018904 #13 ENSGT00910000148519 ENSGT00940000158132 #14 ENSGT00940000161397 #15 ENSGT00530000063582.a #18 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 Euarchontoglires ANCESTRAL SPECIES 11 ENSGT00940000160294 ENSGT00940000154783.e.b ENSGT00940000163020 #16 ENSGT00390000016992 #17 ENSGT00940000154783.f ENSGT00390000012647 ENSGT00390000006885.a #8 ENSGT00390000000360.r.b ##9 ENSGT00950000183068.a.a #12 ENSGT00390000018904 #13 ENSGT00910000148519 ENSGT00940000158132 #14 ENSGT00940000161397 #15 ENSGT00530000063582.a #18 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 Primates ANCESTRAL SPECIES 23 ENSGT00940000154783.e.b ENSGT00940000163020 #16 ENSGT00390000016992 #17 ENSGT00940000154783.f ENSGT00390000012647 ENSGT00390000006885.a #8 ENSGT00390000000360.q.a ##9 ENSGT00390000000360.r.a.b ##9 ENSGT00950000183068.a.a #12 ENSGT00390000018904 #13 ENSGT00910000148519 ENSGT00940000158132 #14 ENSGT00940000161397 #15 ENSGT00530000063582.a #18 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 Haplorrhini ANCESTRAL SPECIES 33 ENSGT00950000182808.b.b ENSGT00950000183004.a.a.a.b ENSGT00530000063435.a ENSGT00530000063808.a ENSGT00410000025802.h ENSGT00940000159803 ENSGT00510000047092 ENSGT00940000158744 ENSGT00390000005685 ENSGT00940000160294 ENSGT00940000154783.f ENSGT00940000163020 #16 ENSGT00390000016992 #17 ENSGT00530000063582.a #18 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 ENSGT00940000154783.e.b ENSGT00390000012647 ENSGT00390000006885.a #8 ENSGT00390000000360.q.a ##9 ENSGT00950000183068.a.a #12 ENSGT00390000018904 #13 ENSGT00910000148519 ENSGT00940000158132 #14 ENSGT00940000161397 #15 Simiiformes ANCESTRAL SPECIES 9 ENSGT00390000005685 ENSGT00940000160294 ENSGT00940000163020 #16 ENSGT00940000154783.e.b ENSGT00390000012647 ENSGT00390000006885.a #8 ENSGT00390000000360.q.a ##9 ENSGT00950000183068.a.a #12 ENSGT00390000018904 #13 ENSGT00910000148519 ENSGT00940000158132 #14 ENSGT00940000161397 #15 ENSGT00390000016992 #17 ENSGT00530000063582.a #18 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 ENSGT00550000075071 ENSGT00510000049125 #23 Catarrhini ANCESTRAL SPECIES 12 ENSGT00390000005685 ENSGT00940000160294 ENSGT00940000163020 #16 ENSGT00390000016992 #17 ENSGT00940000154783.e.b ENSGT00390000012647 ENSGT00390000006885.a #8 ENSGT00390000000360.q.a ##9 ENSGT00950000183068.a.a #12 ENSGT00390000018904 #13 ENSGT00910000148519 ENSGT00940000158132 #14 ENSGT00940000161397 #15 ENSGT00530000063582.a #18 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 ENSGT00550000075071 ENSGT00510000049125 #23 Cercopithecidae ANCESTRAL SPECIES 37 ENSGT00390000005685 ENSGT00940000160294 ENSGT00940000163020 #16 ENSGT00390000016992 #17 ENSGT00940000154783.e.b ENSGT00390000012647 ENSGT00390000006885.a #8 ENSGT00390000000360.q.a ##9 ENSGT00950000183068.a.a #12 ENSGT00390000018904 #13 ENSGT00910000148519 ENSGT00940000158132 #14 ENSGT00940000161397 #15 ENSGT00530000063582.a #18 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 ENSGT00510000049125 #23 Cercopithecinae ANCESTRAL SPECIES 25 ENSGT00390000005685 ENSGT00940000160294 ENSGT00940000163020 #16 ENSGT00390000016992 #17 ENSGT00940000154783.e.b ENSGT00390000012647 ENSGT00390000006885.a #8 ENSGT00390000000360.q.a ##9 ENSGT00950000183068.a.a #12 ENSGT00390000018904.hb #13 ENSGT00910000148519 ENSGT00940000158132 #14 ENSGT00940000161397 #15 ENSGT00530000063582.a #18 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 ENSGT00510000049125 #23 Cercopithecinae_a ANCESTRAL SPECIES 11 ENSGT00940000160294 ENSGT00390000000950.c.b.d.a.d ENSGT00940000154783.e.b ENSGT00390000012647 ENSGT00390000006885.a #8 ENSGT00390000000360.q.a ##9 ENSGT00950000183068.a.a #12 ENSGT00390000018904.hb #13 ENSGT00910000148519 ENSGT00940000158132 #14 ENSGT00940000161397 #15 ENSGT00940000163020 #16 ENSGT00390000016992 #17 ENSGT00530000063582.a #18 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 ENSGT00510000049125 #23 Macaca ANCESTRAL SPECIES 13 ENSGT00940000158744 ENSGT00390000005685 ENSGT00940000160294 ENSGT00940000154783.e.b ENSGT00390000012647 ENSGT00390000006885.a #8 ENSGT00390000000360.q.a ##9 ENSGT00950000183068.a.a #12 ENSGT00390000018904.hb #13 ENSGT00940000158132 #14 ENSGT00940000161397 #15 ENSGT00940000163020 #16 ENSGT00390000016992 #17 ENSGT00530000063582.a #18 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 ENSGT00510000049125 #23 Macaca_a ANCESTRAL SPECIES 11 ENSGT00510000047092 ENSGT00940000158744 ENSGT00390000005685 ENSGT00940000160294 ENSGT00940000154783.e.b ENSGT00390000006885.a #8 ENSGT00390000000360.q.a ##9 ENSGT00950000183068.a.a #12 ENSGT00390000018904.hb #13 ENSGT00940000158132 #14 ENSGT00940000161397 #15 ENSGT00940000163020 #16 ENSGT00390000016992 #17 ENSGT00530000063582.a #18 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 ENSGT00510000049125 #23 Rhesus MODERN SPECIES 327 CMC4 (ENSMMUG00000050298) #7 MTCP1 (ENSMMUG00000010251) #8 BRCC3 (ENSMMUG00000010253) #9 ENSMMUG00000062127 #10 ENSMMUG00000052111 #11 ENSMMUG00000043981 #12 ENSMMUG00000015095 #13 RAB39B (ENSMMUG00000059069) #14 CLIC2 (ENSMMUG00000061009) #15 H2AB2 (ENSMMUG00000055745) #16 ENSMMUG00000058345 #17 TMLHE (ENSMMUG00000009481) #18 ENSMMUG00000061765 #19 ENSMMUG00000064879 #20 SPRY3 (ENSMMUG00000051319) #21 VAMP7 (ENSMMUG00000002015) #22 IL9R (ENSMMUG00000002016) #23 ENSMMUG00000032340 #24 ENSMMUG00000063448 #25 Crab-eating macaque MODERN SPECIES 175 ENSMFAG00000060522 F8 (ENSMFAG00000039948) FUNDC2 (ENSMFAG00000038031) ENSMFAG00000045993 MTCP1 (ENSMFAG00000052287) #8 BRCC3 (ENSMFAG00000031106) ##9 ENSMFAG00000056611 #12 VBP1 (ENSMFAG00000032032) #13 ENSMFAG00000058523 ENSMFAG00000050091 ENSMFAG00000064770 RAB39B (ENSMFAG00000036188) #14 ENSMFAG00000032659 #15 SPRY3 (ENSMFAG00000014963) #21 ENSMFAG00000053989 VAMP7 (ENSMFAG00000031038) #22 IL9R (ENSMFAG00000000235) #23 Pig-tailed macaque MODERN SPECIES 407 ENSMNEG00000015678 TMLHE (ENSMNEG00000029100) #18 SPRY3 (ENSMNEG00000037832) #21 VAMP7 (ENSMNEG00000024526) #22 IL9R (ENSMNEG00000029519) #23 Cercopithecinae_b ANCESTRAL SPECIES 66 ENSGT00940000159803 ENSGT00510000047092 ENSGT00940000158744 ENSGT00390000005685 ENSGT00940000160294 ENSGT00390000000950.c.b.d.a.d ENSGT00940000154783.e.b ENSGT00390000012647 ENSGT00390000006885.a #8 ENSGT00390000000360.q.a ##9 ENSGT00390000018904.hb #13 ENSGT00910000148519 ENSGT00940000158132 #14 ENSGT00940000161397 #15 ENSGT00530000063582.a #18 ENSGT00510000047733 #22 ENSGT00510000049125 #23 Olive baboon MODERN SPECIES 792 FLNA (ENSPANG00000025614) ENSPANG00000046902 SMIM9 (ENSPANG00000014914) MPP1 (ENSPANG00000013144) DKC1 (ENSPANG00000011978) GAB3 (ENSPANG00000004006) F8 (ENSPANG00000010602) FUNDC2 (ENSPANG00000004381) CMC4 (ENSPANG00000017783) MTCP1 (ENSPANG00000012244) #8 BRCC3 (ENSPANG00000010904) ##9 RAB39B (ENSPANG00000008960) #14 TMLHE (ENSPANG00000024415) #18 CLIC2 (ENSPANG00000008414) #15 VBP1 (ENSPANG00000029954) #13 VAMP7 (ENSPANG00000015780) #22 IL9R (ENSPANG00000004380) #23 Cercopithecinae_d ANCESTRAL SPECIES 265 ENSGT00530000063582.a #18 ENSGT00510000047733 #22 ENSGT00510000049125 #23 Sooty mangabey MODERN SPECIES 476 TMLHE (ENSCATG00000021587) #18 VAMP7 (ENSCATG00000031777) #22 IL9R (ENSCATG00000029289) #23 Drill MODERN SPECIES 1378 VAMP7 (ENSMLEG00000025289) #22 Vervet Monkey MODERN SPECIES 203 MPP1 (ENSCSAG00000006698) SMIM9 (ENSCSAG00000006693) F8 (ENSCSAG00000006668) ENSCSAG00000000521 #16 ENSCSAG00000000520 #16 ENSCSAG00000000519 #17 FUNDC2 (ENSCSAG00000006563) CMC4 (ENSCSAG00000006553) MTCP1 (ENSCSAG00000006547) #8 BRCC3 (ENSCSAG00000006538) ##9 ENSCSAG00000006524 #13 RAB39B (ENSCSAG00000006507) #14 CLIC2 (ENSCSAG00000006505) #15 TMLHE (ENSCSAG00000006499) #18 SPRY3 (ENSCSAG00000000518) #21 VAMP7 (ENSCSAG00000006492) #22 IL9R (ENSCSAG00000006485) #23 Rhinopithecus ANCESTRAL SPECIES 943 ENSGT00510000047733 #22 ENSGT00510000049125 #23 Golden snub-nosed monkey MODERN SPECIES 297 VAMP7 (ENSRROG00000022660) #22 Black snub-nosed monkey MODERN SPECIES 450 VAMP7 (ENSRBIG00000033072) #22 IL9R (ENSRBIG00000025291) #23 Hominoidea ANCESTRAL SPECIES 29 ENSGT00510000047092 ENSGT00940000158744 ENSGT00390000005685 ENSGT00940000160294 ENSGT00940000154783.e.b ENSGT00390000012647 ENSGT00390000006885.a #8 ENSGT00390000000360.q.a ##9 ENSGT00390000018904 #13 ENSGT00940000158132 #14 ENSGT00940000161397 #15 ENSGT00940000163020 #16 ENSGT00390000016992 #17 ENSGT00530000063582.a #18 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 ENSGT00510000049125 #23 Gibbon MODERN SPECIES 449 DKC1 (ENSNLEG00000014323) MPP1 (ENSNLEG00000014358) ENSNLEG00000014423 ENSNLEG00000028336 SMIM9 (ENSNLEG00000014424) F8 (ENSNLEG00000014427) ENSNLEG00000018302 #17 ENSNLEG00000014443 CMC4 (ENSNLEG00000027271) MTCP1 (ENSNLEG00000014453) #8 BRCC3 (ENSNLEG00000014460) ##9 VBP1 (ENSNLEG00000014475) #13 RAB39B (ENSNLEG00000014505) #14 CLIC2 (ENSNLEG00000028091) #15 SPRY3 (ENSNLEG00000018303) #21 ENSNLEG00000014513 #22 IL9R (ENSNLEG00000014552) #23 Hominidae ANCESTRAL SPECIES 8 ENSGT00510000047092 ENSGT00940000158744 ENSGT00390000005685 ENSGT00940000160294 ENSGT00940000154783.e.b ENSGT00390000012647 ENSGT00390000006885.a #8 ENSGT00390000000360.q.a ##9 ENSGT00390000018904 #13 ENSGT00940000158132 #14 ENSGT00940000161397 #15 ENSGT00940000163020 #16 ENSGT00390000016992 #17 ENSGT00530000063582.a #18 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 ENSGT00510000049125.d.a.a #23 Orangutan MODERN SPECIES 242 ENSPPYG00000038630 #17 FUNDC2 (ENSPPYG00000020897) CMC4 (ENSPPYG00000020898) MTCP1 (ENSPPYG00000035172) #8 BRCC3 (ENSPPYG00000020899) ##9 VBP1 (ENSPPYG00000020900) #13 RAB39B (ENSPPYG00000032989) #14 CLIC2 (ENSPPYG00000020902) #15 ENSPPYG00000037853 #16 ENSPPYG00000038438 #17 ENSPPYG00000032431 #17 ENSPPYG00000030924 #16 ENSPPYG00000033468 TMLHE (ENSPPYG00000020904) #18 SPRY3 (ENSPPYG00000020905) #21 VAMP7 (ENSPPYG00000020906) #22 ENSPPYG00000020907 #23 Homo/Pan/Gorilla group ANCESTRAL SPECIES 9 ENSGT00510000047092 ENSGT00940000158744 ENSGT00390000005685 ENSGT00940000160294 ENSGT00940000163020 #16 ENSGT00390000016992 #17 ENSGT00940000154783.e.b ENSGT00390000012647 ENSGT00390000006885.a #8 ENSGT00390000000360.q.a ##9 ENSGT00390000018904 #13 ENSGT00940000158132 #14 ENSGT00940000161397 #15 ENSGT00530000063582.a #18 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 ENSGT00510000049125.d.a.a #23 Gorilla MODERN SPECIES 523 DKC1 (ENSGGOG00000001045) MPP1 (ENSGGOG00000001049) ENSGGOG00000025061 SMIM9 (ENSGGOG00000005354) F8 (ENSGGOG00000003600) ENSGGOG00000003617 #17 FUNDC2 (ENSGGOG00000026954) CMC4 (ENSGGOG00000011528) MTCP1 (ENSGGOG00000037091) #8 BRCC3 (ENSGGOG00000027248) ##9 VBP1 (ENSGGOG00000027061) #13 RAB39B (ENSGGOG00000005567) #14 CLIC2 (ENSGGOG00000023292) #15 ENSGGOG00000024008 #18 SPRY3 (ENSGGOG00000022101) #21 ENSGGOG00000001709 #22 ENSGGOG00000007446 #23 Homo/Pan group ANCESTRAL SPECIES 9 ENSGT00510000047092 ENSGT00940000158744 ENSGT00390000005685 ENSGT00940000160294 ENSGT00940000154783.e.b ENSGT00390000012647 ENSGT00390000006885.a #8 ENSGT00390000000360.q.a ##9 ENSGT00390000018904 #13 ENSGT00940000158132 #14 ENSGT00940000161397 #15 ENSGT00940000163020 #16 ENSGT00390000016992.cb.b #17 ENSGT00530000063582.a #18 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 ENSGT00510000049125.c #23 Human MODERN SPECIES 1827 H2AB1 (ENSG00000274183) #16 F8A1 (ENSG00000288722) #17 FUNDC2 (ENSG00000165775) CMC4 (ENSG00000182712) MTCP1 (ENSG00000214827) #8 BRCC3 (ENSG00000185515) ##9 VBP1 (ENSG00000155959) #13 RAB39B (ENSG00000155961) #14 CLIC2 (ENSG00000155962) #15 H2AB2 (ENSG00000277858) #16 F8A2 (ENSG00000288709) #17 F8A3 (ENSG00000277150) #17 H2AB3 (ENSG00000277745) #16 TMLHE (ENSG00000185973) #18 SPRY3 (ENSG00000168939) #21 VAMP7 (ENSG00000124333) #22 IL9R (ENSG00000124334) #23 WASH6P (ENSG00000182484) Pan ANCESTRAL SPECIES 43 ENSGT00940000158744 ENSGT00390000011549.e ENSGT00390000005685 ENSGT00940000160294 ENSGT00940000163020 #16 ENSGT00390000016992.bb #17 ENSGT00940000154783.e.b ENSGT00390000012647 ENSGT00390000006885.a #8 ENSGT00390000000360.q.a ##9 ENSGT00390000018904 #13 ENSGT00940000158132 #14 ENSGT00940000161397 #15 ENSGT00530000063582.a.m #18 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 ENSGT00510000049125.d.a.a #23 Bonobo MODERN SPECIES 369 DKC1 (ENSPPAG00000023820) MPP1 (ENSPPAG00000040588) ENSPPAG00000031767 SMIM9 (ENSPPAG00000035097) F8 (ENSPPAG00000033513) ENSPPAG00000022594 #16 FUNDC2 (ENSPPAG00000028980) CMC4 (ENSPPAG00000030202) MTCP1 (ENSPPAG00000029273) #8 BRCC3 (ENSPPAG00000039895) ##9 VBP1 (ENSPPAG00000036017) #13 RAB39B (ENSPPAG00000041186) #14 CLIC2 (ENSPPAG00000041308) #15 ENSPPAG00000037387 #18 SPRY3 (ENSPPAG00000001617) #21 ENSPPAG00000032770 #22 IL9R (ENSPPAG00000035209) #23 Chimpanzee MODERN SPECIES 972 SMIM9 (ENSPTRG00000028167) F8 (ENSPTRG00000022455) ENSPTRG00000052848 #16 ENSPTRG00000052307 #17 FUNDC2 (ENSPTRG00000044160) CMC4 (ENSPTRG00000039562) MTCP1 (ENSPTRG00000022457) #8 BRCC3 (ENSPTRG00000044491) ##9 VBP1 (ENSPTRG00000022460) #13 RAB39B (ENSPTRG00000042083) #14 CLIC2 (ENSPTRG00000022462) #15 ENSPTRG00000044564 #16 ENSPTRG00000046305 #17 ENSPTRG00000045691 #18 SPRY3 (ENSPTRG00000048381) #21 VAMP7 (ENSPTRG00000046127) #22 ENSPTRG00000007524 #23 Platyrrhini ANCESTRAL SPECIES 42 ENSGT00940000158744 ENSGT00390000005685 ENSGT00940000160294 ENSGT00940000154783.f ENSGT00390000012647.g ENSGT00390000006885.a #8 ENSGT00390000000360.q.a ##9 ENSGT00950000183068.a.a #12 ENSGT00390000018904 #13 ENSGT00940000158132 #14 ENSGT00940000161397 #15 ENSGT00390000016992 #17 ENSGT00940000163020 #16 ENSGT00530000063582.a #18 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 ENSGT00510000049125 #23 Cebidae ANCESTRAL SPECIES 27 ENSGT00940000158744 ENSGT00390000005685 ENSGT00940000160294 ENSGT00940000154783.e.a.a.a ENSGT00390000012647.g ENSGT00390000006885.a #8 ENSGT00390000000360.q.a ##9 ENSGT00950000183068.a.a #12 ENSGT00390000018904 #13 ENSGT00940000158132 #14 ENSGT00940000161397 #15 ENSGT00390000016992 #17 ENSGT00940000163020 #16 ENSGT00530000063582.a #18 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 ENSGT00510000049125 #23 Marmoset MODERN SPECIES 78 ENSCJAG00000076498 #16 ENSCJAG00000079192 #17 ENSCJAG00000004287 CMC4 (ENSCJAG00000078864) MTCP1 (ENSCJAG00000042284) #8 BRCC3 (ENSCJAG00000004308) ##9 ENSCJAG00000085645 #12 VBP1 (ENSCJAG00000004338) #13 RAB39B (ENSCJAG00000064579) #14 CLIC2 (ENSCJAG00000004362) #15 ENSCJAG00000073788 #17 ENSCJAG00000071739 #16 TMLHE (ENSCJAG00000021685) #18 ENSCJAG00000082014 ##25 ENSCJAG00000073952 ##25 VAMP7 (ENSCJAG00000047535) #22 IL9R (ENSCJAG00000008510) #23 ENSCJAG00000071287 Cebidae_a ANCESTRAL SPECIES 78 ENSGT00940000159803 ENSGT00510000047092 ENSGT00940000158744 ENSGT00390000005685 ENSGT00940000160294 ENSGT00940000154783.e.a.a.a ENSGT00390000012647.g ENSGT00390000006885.a #8 ENSGT00390000000360.q.a ##9 ENSGT00390000018904 #13 ENSGT00940000158132 #14 ENSGT00940000161397 #15 ENSGT00390000016992 #17 ENSGT00530000063582.a #18 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 ENSGT00510000049125 #23 Capuchin MODERN SPECIES 574 FUNDC2 (ENSCCAG00000019713) MTCP1 (ENSCCAG00000023625) #8 BRCC3 (ENSCCAG00000033753) ##9 VBP1 (ENSCCAG00000022791) #13 RAB39B (ENSCCAG00000030469) #14 CLIC2 (ENSCCAG00000019952) #15 ENSCCAG00000031797 #17 TMLHE (ENSCCAG00000028430) #18 SPRY3 (ENSCCAG00000031944) #21 VAMP7 (ENSCCAG00000023295) #22 IL9R (ENSCCAG00000028031) #23 Bolivian squirrel monkey DUPLICATION Bolivian squirrel monkey MODERN SPECIES 46 NEUROD1 (ENSSBOG00000015587) ITPRID2 (ENSSBOG00000013272) PPP1R1C (ENSSBOG00000032708) ENSSBOG00000030558 PDE1A (ENSSBOG00000034194) ENSSBOG00000035539 DNAJC10 (ENSSBOG00000020962) FRZB (ENSSBOG00000023256) NCKAP1 (ENSSBOG00000031170) DUSP19 (ENSSBOG00000029076) NUP35 (ENSSBOG00000018676) ENSSBOG00000026419 ZNF804A (ENSSBOG00000025383) TMLHE (ENSSBOG00000033577) #18 SPRY3 (ENSSBOG00000011067) #21 ENSSBOG00000026268 #22 IL9R (ENSSBOG00000029398) #23 ENSSBOG00000023734 ENSSBOG00000031371 ENSSBOG00000022772 Bolivian squirrel monkey MODERN SPECIES 43 ENSSBOG00000028612 SV2C (ENSSBOG00000034394) ENSSBOG00000032555 F2RL2 (ENSSBOG00000026294) IQGAP2 (ENSSBOG00000020078) F2R (ENSSBOG00000033584) ENSSBOG00000027642 F2RL1 (ENSSBOG00000028683) S100Z (ENSSBOG00000016013) ENSSBOG00000013156 CRHBP (ENSSBOG00000024077) AGGF1 (ENSSBOG00000019539) ENSSBOG00000032840 PDE8B (ENSSBOG00000020456) WDR41 (ENSSBOG00000019142) ENSSBOG00000021924 #22 OTP (ENSSBOG00000035833) TBCA (ENSSBOG00000031001) AP3B1 (ENSSBOG00000029511) ENSSBOG00000034436 SCAMP1 (ENSSBOG00000029488) LHFPL2 (ENSSBOG00000033083) ARSB (ENSSBOG00000031483) ENSSBOG00000011617 DMGDH (ENSSBOG00000035140) BHMT (ENSSBOG00000030724) JMY (ENSSBOG00000001249) ENSSBOG00000022728 HOMER1 (ENSSBOG00000030696) TENT2 (ENSSBOG00000025595) CMYA5 (ENSSBOG00000035707) Tarsier MODERN SPECIES 2488 VAMP7 (ENSTSYG00000036722) #22 Strepsirrhini ANCESTRAL SPECIES 55 ENSGT00390000005685 ENSGT00940000160294 ENSGT00940000163020 #16 ENSGT00390000016992 #17 ENSGT00940000154783.f ENSGT00390000012647 ENSGT00390000006885.a #8 ENSGT00390000000360.r.b ##9 ENSGT00390000000360.r.a.b ##9 ENSGT00950000183068.a.a #12 ENSGT00390000018904 #13 ENSGT00940000158132 #14 ENSGT00940000161397 #15 ENSGT00530000063582.a #18 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 Bushbaby MODERN SPECIES 374 GAB3 (ENSOGAG00000010477) DKC1 (ENSOGAG00000003399) MPP1 (ENSOGAG00000003402) F8 (ENSOGAG00000005241) ENSOGAG00000034494 #17 FUNDC2 (ENSOGAG00000033461) CMC4 (ENSOGAG00000027720) MTCP1 (ENSOGAG00000005252) #8 ENSOGAG00000005255 ##9 ENSOGAG00000029432 #12 VBP1 (ENSOGAG00000016566) #13 RAB39B (ENSOGAG00000025424) #14 ENSOGAG00000034308 #17 SPRY3 (ENSOGAG00000001824) #21 VAMP7 (ENSOGAG00000030896) #22 Lemuriformes ANCESTRAL SPECIES 130 ENSGT00530000063582.a #18 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 Mouse lemur MODERN SPECIES 169 ENSMICG00000010404 GPR143 (ENSMICG00000010413) SHROOM2 (ENSMICG00000045523) ENSMICG00000007978 ENSMICG00000014241 SLITRK2 (ENSMICG00000003910) ENSMICG00000027545 ENSMICG00000030858 ENSMICG00000033128 ENSMICG00000034786 ENSMICG00000035061 SLITRK4 (ENSMICG00000036015) ENSMICG00000034247 ENSMICG00000017029 LDOC1 (ENSMICG00000034780) VAMP7 (ENSMICG00000001581) #22 ENSMICG00000032959 ENSMICG00000028484 ARHGEF9 (ENSMICG00000007135) ENSMICG00000043875 ENSMICG00000027801 ENSMICG00000036449 ENSMICG00000030636 ENSMICG00000036554 TMLHE (ENSMICG00000010663) #18 RAB39B (ENSMICG00000044410) #14 VBP1 (ENSMICG00000033175) #13 BRCC3 (ENSMICG00000036150) ##9 MTCP1 (ENSMICG00000037190) #8 CMC4 (ENSMICG00000046262) ENSMICG00000028940 Lemuriformes_a ANCESTRAL SPECIES 316 ENSGT00530000063582.a #18 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 Coquerels sifaka MODERN SPECIES 888 TMLHE (ENSPCOG00000021518) #18 SPRY3 (ENSPCOG00000000267) #21 VAMP7 (ENSPCOG00000012613) #22 Greater bamboo lemur DUPLICATION Greater bamboo lemur MODERN SPECIES 132 PWWP2A (ENSPSMG00000006002) CCNJL (ENSPSMG00000005972) C1QTNF2 (ENSPSMG00000005948) FAM200C (ENSPSMG00000005938) SLU7 (ENSPSMG00000005902) ENSPSMG00000005873 ATP10B (ENSPSMG00000005850) GABRB2 (ENSPSMG00000005588) GABRA6 (ENSPSMG00000005527) GABRA1 (ENSPSMG00000005443) GABRG2 (ENSPSMG00000005134) CCNG1 (ENSPSMG00000004885) NUDCD2 (ENSPSMG00000004873) HMMR (ENSPSMG00000004855) MAT2B (ENSPSMG00000004803) ENSPSMG00000004725 #22 ENSPSMG00000004710 TCEAL9 (ENSPSMG00000004701) BEX3 (ENSPSMG00000004694) TCEAL4 (ENSPSMG00000004676) Greater bamboo lemur MODERN SPECIES 1618 SPRY3 (ENSPSMG00000020633) #21 ENSPSMG00000020616 #22 Euarchontoglires_A ANCESTRAL SPECIES 11 ENSGT00940000158744 ENSGT00390000005685 ENSGT00940000160294 ENSGT00940000163020 #16 ENSGT00390000016992 #17 ENSGT00940000154783.f ENSGT00390000012647 ENSGT00390000006885.a #8 ENSGT00390000000360.r.b ##9 ENSGT00950000183068.a.a #12 ENSGT00390000018904 #13 ENSGT00940000158132 #14 ENSGT00940000161397 #15 ENSGT00530000063582.a #18 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 Glires ANCESTRAL SPECIES 10 ENSGT00940000158744 ENSGT00390000005685 ENSGT00940000160294 ENSGT00940000163020 #16 ENSGT00390000016992 #17 ENSGT00940000154783.f ENSGT00390000012647.d ENSGT00390000006885.a #8 ENSGT00390000000360.r.b ##9 ENSGT00950000183068.a.a #12 ENSGT00390000018904 #13 ENSGT00940000158132 #14 ENSGT00940000161397 #15 ENSGT00530000063582.a #18 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 Lagomorpha ANCESTRAL SPECIES 188 ENSGT00940000159803 ENSGT00510000047092 ENSGT00940000158744 ENSGT00940000160294 ENSGT00940000154783.f ENSGT00390000012647.c.b ENSGT00390000006885.a #8 ENSGT00390000000360.r.b ##9 ENSGT00950000183068.a.a #12 ENSGT00390000018904 #13 ENSGT00940000158132 #14 ENSGT00940000161397 #15 ENSGT00940000163020 #16 ENSGT00530000063582.a #18 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 Rabbit DUPLICATION Rabbit MODERN SPECIES 516 MPP1 (ENSOCUG00000012660) ENSOCUG00000036130 F8 (ENSOCUG00000000142) FUNDC2 (ENSOCUG00000024176) ENSOCUG00000027749 MTCP1 (ENSOCUG00000009720) #8 BRCC3 (ENSOCUG00000009730) ##9 ENSOCUG00000023330 #12 ENSOCUG00000017448 #13 RAB39B (ENSOCUG00000004254) #14 ENSOCUG00000037631 CLIC2 (ENSOCUG00000007480) #15 ENSOCUG00000024947 #16 TMLHE (ENSOCUG00000008669) #18 SPRY3 (ENSOCUG00000022218) #21 ENSOCUG00000001270 #22 Rabbit MODERN SPECIES 6 ENSOCUG00000034864 ENSOCUG00000026700 ENSOCUG00000026559 ENSOCUG00000029658 ENSOCUG00000022593 ENSOCUG00000005024 SULT1E1 (ENSOCUG00000029429) ENSOCUG00000009486 CSN2 (ENSOCUG00000009494) ENSOCUG00000028049 ENSOCUG00000003355 ODAM (ENSOCUG00000024016) FDCSP (ENSOCUG00000032150) CSN3 (ENSOCUG00000015167) AMTN (ENSOCUG00000002586) ENSOCUG00000034030 #22 ENSOCUG00000024113 AMBN (ENSOCUG00000022916) ENAM (ENSOCUG00000006609) JCHAIN (ENSOCUG00000027219) UTP3 (ENSOCUG00000010003) RUFY3 (ENSOCUG00000010015) GRSF1 (ENSOCUG00000010029) ENSOCUG00000026385 MOB1B (ENSOCUG00000001806) DCK (ENSOCUG00000001265) ENSOCUG00000034841 SLC4A4 (ENSOCUG00000006500) GC (ENSOCUG00000007986) ENSOCUG00000032384 NPFFR2 (ENSOCUG00000006868) Rodentia ANCESTRAL SPECIES 10 ENSGT00940000158744 ENSGT00390000005685 ENSGT00940000160294 ENSGT00940000163020 #16 ENSGT00390000016992 #17 ENSGT00940000154783.f ENSGT00390000012647.d ENSGT00390000006885.a #8 ENSGT00390000000360.r.b ##9 ENSGT00950000183068.a.a #12 ENSGT00390000018904 #13 ENSGT00940000158132 #14 ENSGT00940000161397 #15 ENSGT00530000063582.a #18 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 Rodentia_B ANCESTRAL SPECIES 16 ENSGT00510000047092 ENSGT00940000158744 ENSGT00390000005685 ENSGT00940000160294 ENSGT00940000154783.f ENSGT00390000012647.d ENSGT00390000006885.a #8 ENSGT00390000000360.r.b ##9 ENSGT00390000018904 #13 ENSGT00940000158132 #14 ENSGT00940000161397 #15 ENSGT00940000163020 #16 ENSGT00390000016992 #17 ENSGT00530000063582.a #18 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 Kangaroo rat MODERN SPECIES 526 ENSDORG00000000625 Gab3 (ENSDORG00000006809) ENSDORG00000013566 Mpp1 (ENSDORG00000013568) ENSDORG00000024019 F8 (ENSDORG00000013155) ENSDORG00000028874 Fundc2 (ENSDORG00000013156) Mtcp1 (ENSDORG00000013159) #8 ENSDORG00000029487 ENSDORG00000013161 ##9 ENSDORG00000004628 #13 Rab39b (ENSDORG00000029496) #14 F8a (ENSDORG00000028723) #17 ENSDORG00000014658 #18 ENSDORG00000026230 #22 Myomorpha ANCESTRAL SPECIES 6 ENSGT00510000047092 ENSGT00940000158744 ENSGT00390000005685 ENSGT00940000160294 ENSGT00940000154783.f ENSGT00390000012647.d ENSGT00390000006885.a #8 ENSGT00390000000360.r.b ##9 ENSGT00390000018904 #13 ENSGT00940000158132 #14 ENSGT00940000161397 #15 ENSGT00940000163020 #16 ENSGT00390000016992 #17 ENSGT00530000063582.a #18 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 Lesser Egyptian jerboa MODERN SPECIES 248 Gab3 (ENSJJAG00000010656) ENSJJAG00000010086 Mpp1 (ENSJJAG00000009953) F8 (ENSJJAG00000003754) Fundc2 (ENSJJAG00000000632) Cmc4 (ENSJJAG00000018410) Mtcp1 (ENSJJAG00000018300) #8 ENSJJAG00000017846 ##9 ENSJJAG00000017143 #13 Rab39b (ENSJJAG00000016977) #14 ENSJJAG00000016928 #15 ENSJJAG00000016876 #18 ENSJJAG00000016767 #21 ENSJJAG00000016374 ENSJJAG00000016041 #22 Muroidea ANCESTRAL SPECIES 13 ENSGT00510000047092 ENSGT00940000158744 ENSGT00390000005685 ENSGT00940000160294 ENSGT00940000154783.f ENSGT00390000012647.d ENSGT00390000006885.a #8 ENSGT00390000000360.r.b ##9 ENSGT00390000018904 #13 ENSGT00940000158132 #14 ENSGT00940000161397 #15 ENSGT00940000163020 #16 ENSGT00390000016992 #17 ENSGT00530000063582.a #18 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 Upper Galilee mountains blind mole rat MODERN SPECIES 1181 ENSNGAG00000009939 Gab3 (ENSNGAG00000003725) ENSNGAG00000015724 Mpp1 (ENSNGAG00000017947) F8 (ENSNGAG00000013455) Fundc2 (ENSNGAG00000017968) Cmc4 (ENSNGAG00000019649) Mtcp1 (ENSNGAG00000020777) #8 ENSNGAG00000000120 ##9 Vbp1 (ENSNGAG00000013672) #13 Rab39b (ENSNGAG00000000596) #14 ENSNGAG00000001653 #15 F8a (ENSNGAG00000011651) #17 ENSNGAG00000012650 #18 ENSNGAG00000015269 #21 ENSNGAG00000016000 #22 Muroidea_A ANCESTRAL SPECIES 7 ENSGT01100000263574.b.j ENSGT00940000159803 ENSGT00510000047092 ENSGT00940000158744 ENSGT00390000005685 ENSGT00940000160294 ENSGT00940000154783.f ENSGT00390000012647.d ENSGT00390000006885.a #8 ENSGT00390000000360.r.b.a.a ##9 ENSGT00390000018904 #13 ENSGT00940000158132 #14 ENSGT00940000161397 #15 ENSGT00530000063582.a #18 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 Cricetidae ANCESTRAL SPECIES 8 ENSGT01050000244815.B.a.a ENSGT00940000159803 ENSGT00510000047092 ENSGT00940000158744 ENSGT00390000005685 ENSGT00940000160294 ENSGT00940000154783.f.db.b ENSGT00390000012647.d ENSGT00390000006885.a #8 ENSGT00390000000360.r.b.a.a ##9 ENSGT00390000018904 #13 ENSGT00940000158132 #14 ENSGT00940000161397 #15 ENSGT00530000063582.a #18 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 Cricetidae_B ANCESTRAL SPECIES 28 ENSGT01050000244815.B.a.a ENSGT00940000159803 ENSGT00510000047092 ENSGT00940000158744 ENSGT00390000005685 ENSGT00940000160294 ENSGT00940000154783.f.db.b ENSGT00390000012647.d ENSGT00390000006885.a #8 ENSGT00390000000360.r.b.a.a ##9 ENSGT00390000018904 #13 ENSGT00940000158132 #14 ENSGT00940000161397 #15 ENSGT00530000063582.a #18 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 Northern American deer mouse MODERN SPECIES 475 Gab3 (ENSPEMG00000012634) Dkc1 (ENSPEMG00000013348) ENSPEMG00000022395 Mpp1 (ENSPEMG00000014261) Smim9 (ENSPEMG00000010945) F8 (ENSPEMG00000014119) ENSPEMG00000026725 Cmc4 (ENSPEMG00000024388) Mtcp1 (ENSPEMG00000030977) #8 Brcc3 (ENSPEMG00000014353) ##9 Vbp1 (ENSPEMG00000004677) #13 Rab39b (ENSPEMG00000029552) #14 ENSPEMG00000029793 #15 ENSPEMG00000014227 #18 ENSPEMG00000000399 #21 ENSPEMG00000008468 #22 ENSPEMG00000017331 Ct55 (ENSPEMG00000000280) ENSPEMG00000024706 ENSPEMG00000029185 ENSPEMG00000027347 Prairie vole MODERN SPECIES 168 Gab3 (ENSMOCG00000015626) ENSMOCG00000001169 Mpp1 (ENSMOCG00000000082) Smim9 (ENSMOCG00000003619) ENSMOCG00000001114 F8 (ENSMOCG00000006178) Fundc2 (ENSMOCG00000013641) Mtcp1 (ENSMOCG00000002450) #8 Cmc4 (ENSMOCG00000019858) ENSMOCG00000000841 ##9 Vbp1 (ENSMOCG00000013440) #13 Rab39b (ENSMOCG00000006994) #14 ENSMOCG00000012583 #18 ENSMOCG00000003592 #21 ENSMOCG00000015068 ENSMOCG00000012849 #22 ENSMOCG00000019973 Cricetinae ANCESTRAL SPECIES 46 ENSGT01050000244815.B.a.a ENSGT00410000025802.g.b.q.a ENSGT00940000159803 ENSGT00510000047092 ENSGT00940000158744 ENSGT00390000005685 ENSGT00940000160294 ENSGT00940000154783.f.db.b ENSGT00390000012647.d ENSGT00390000006885.a #8 ENSGT00390000000360.r.b.a.a ##9 ENSGT00390000018904 #13 ENSGT00940000158132 #14 ENSGT00530000063582.a #18 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 Chinese hamster chok1gshd MODERN SPECIES 16 ENSCGRG00001018213 ENSCGRG00001000852 Gab3 (ENSCGRG00001024780) ENSCGRG00001014574 Mpp1 (ENSCGRG00001000334) Smim9 (ENSCGRG00001020847) F8 (ENSCGRG00001018172) Fundc2 (ENSCGRG00001005074) Cmc4 (ENSCGRG00001024106) Mtcp1 (ENSCGRG00001021448) #8 Brcc3 (ENSCGRG00001000059) ##9 ENSCGRG00001012855 #13 Rab39b (ENSCGRG00001022502) #14 ENSCGRG00001011867 #18 ENSCGRG00001004214 #21 ENSCGRG00001005752 #22 Golden Hamster MODERN SPECIES 891 ENSMAUG00000006516 Gab3 (ENSMAUG00000000113) Dkc1 (ENSMAUG00000016454) ENSMAUG00000000280 Smim9 (ENSMAUG00000018168) F8 (ENSMAUG00000017844) Fundc2 (ENSMAUG00000013769) Mtcp1 (ENSMAUG00000013746) #8 Cmc4 (ENSMAUG00000012104) Brcc3 (ENSMAUG00000017183) ##9 Vbp1 (ENSMAUG00000012627) #13 Rab39b (ENSMAUG00000011701) #14 ENSMAUG00000011862 #18 ENSMAUG00000010073 #21 ENSMAUG00000000133 #22 Murinae ANCESTRAL SPECIES 81 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 Rat MODERN SPECIES 3 AABR07035501.1 (ENSRNOG00000049220) Spn-ps6 (ENSRNOG00000054170) MGC112692 (ENSRNOG00000039282) Spnl1 (ENSRNOG00000028414) ENSRNOG00000063487 Zfp157 (ENSRNOG00000001323) Dhrsx (ENSRNOG00000028323) Asmt (ENSRNOG00000001324) Akap17a (ENSRNOG00000028211) Asmtl (ENSRNOG00000028166) Il3ra (ENSRNOG00000001325) Cyp3a62 (ENSRNOG00000001379) ENSRNOG00000063039 ENSRNOG00000070660 Spry3 (ENSRNOG00000060153) #21 Vamp7 (ENSRNOG00000008372) #22 Cyp3a9 (ENSRNOG00000046643) Rpl31l4 (ENSRNOG00000039249) Gjc3 (ENSRNOG00000001329) Azgp1 (ENSRNOG00000001333) Zkscan1 (ENSRNOG00000001335) LOC103691088 (ENSRNOG00000061371) Zscan21 (ENSRNOG00000039234) Zfp113 (ENSRNOG00000063927) Cops6 (ENSRNOG00000001346) Mcm7 (ENSRNOG00000001349) Ap4m1 (ENSRNOG00000001353) Taf6 (ENSRNOG00000001355) Nxpe5 (ENSRNOG00000068266) LOC680825 (ENSRNOG00000069278) Nxpe5l1 (ENSRNOG00000069743) Mus ANCESTRAL SPECIES 64 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 Mus_A ANCESTRAL SPECIES 60 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 Mus_B ANCESTRAL SPECIES 78 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 Mus_C ANCESTRAL SPECIES 67 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 Steppe mouse DUPLICATION Steppe mouse MODERN SPECIES 1828 ENSMSIG00000000978 #21 ENSMSIG00000000993 #22 ENSMSIG00000001025 Steppe mouse MODERN SPECIES 3237 Edn3 (ENSMSIG00000027362) Zfp831 (ENSMSIG00000027355) Prelid3b (ENSMSIG00000027339) Atp5e (ENSMSIG00000027334) Tubb1 (ENSMSIG00000027325) Ctsz (ENSMSIG00000027319) Nelfcd (ENSMSIG00000027285) ENSMSIG00000027279 Gnas (ENSMSIG00000026932) ENSMSIG00000026915 Npepl1 (ENSMSIG00000026902) Stx16 (ENSMSIG00000026872) ENSMSIG00000026862 #22 ENSMSIG00000026853 Vapb (ENSMSIG00000026843) Rab22a (ENSMSIG00000026825) Ankrd60 (ENSMSIG00000026809) 1700021F07Rik (ENSMSIG00000026800) Pmepa1 (ENSMSIG00000026776) Zbp1 (ENSMSIG00000026758) Pck1 (ENSMSIG00000026751) Ctcfl (ENSMSIG00000026727) Rbm38 (ENSMSIG00000026715) Rae1 (ENSMSIG00000026688) Spo11 (ENSMSIG00000026627) Bmp7 (ENSMSIG00000026606) Tfap2c (ENSMSIG00000026572) Fam209 (ENSMSIG00000026567) Rodentia_A ANCESTRAL SPECIES 9 ENSGT00940000158744 ENSGT00390000005685 ENSGT00940000160294 ENSGT00940000163020 #16 ENSGT00390000016992 #17 ENSGT00940000154783.f ENSGT00390000012647.d ENSGT00390000006885.a #8 ENSGT00390000000360.r.b ##9 ENSGT00950000183068.a.a #12 ENSGT00390000018904 #13 ENSGT00940000158132 #14 ENSGT00940000161397 #15 ENSGT00530000063582.a #18 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 Hystricomorpha ANCESTRAL SPECIES 54 ENSGT00940000159803 ENSGT00510000047092 ENSGT00940000158744 ENSGT00940000160294 ENSGT00940000154783.f ENSGT00390000012647.d ENSGT00390000006885.a #8 ENSGT00390000000360.r.b ##9 ENSGT00390000000360.r.a.a ##9 ENSGT00950000183068.a.a #12 ENSGT00390000018904 #13 ENSGT00940000158132 #14 ENSGT00940000161397 #15 ENSGT00530000063582.a #18 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 Naked mole-rat female MODERN SPECIES 31 F8 (ENSHGLG00000034300) ENSHGLG00000048533 ENSHGLG00000037924 #17 ENSHGLG00000035621 FUNDC2 (ENSHGLG00000001278) MTCP1 (ENSHGLG00000001243) #8 ENSHGLG00000001061 ##9 ENSHGLG00000047377 VBP1 (ENSHGLG00000044108) #13 RAB39B (ENSHGLG00000036840) #14 ENSHGLG00000043926 #15 TMLHE (ENSHGLG00000000101) #18 ENSHGLG00000040623 #21 ENSHGLG00000033454 ENSHGLG00000040335 ENSHGLG00000046871 #22 ENSHGLG00000045337 CNGA2 (ENSHGLG00000002074) PRRG3 (ENSHGLG00000042836) ENSHGLG00000043691 ENSHGLG00000040679 ENSHGLG00000019897 VMA21 (ENSHGLG00000037060) ENSHGLG00000047782 GPR50 (ENSHGLG00000000278) ENSHGLG00000000206 ENSHGLG00000032973 CD99L2 (ENSHGLG00000000568) MTMR1 (ENSHGLG00000000382) ENSHGLG00000044631 MTM1 (ENSHGLG00000000507) Hystricomorpha_a ANCESTRAL SPECIES 61 ENSGT00940000159803 ENSGT00510000047092 ENSGT00940000158744 ENSGT00940000160294 ENSGT00940000154783.f ENSGT00390000012647.d ENSGT00390000006885.a #8 ENSGT00390000000360.r.b ##9 ENSGT00390000000360.r.a.a ##9 ENSGT00950000183068.a.a #12 ENSGT00390000018904 #13 ENSGT00940000158132 #14 ENSGT00940000161397 #15 ENSGT00530000063582.a #18 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 Hystricomorpha_b ANCESTRAL SPECIES 120 ENSGT00940000159803 ENSGT00510000047092 ENSGT00940000158744 ENSGT00940000160294 ENSGT00940000154783.f ENSGT00390000012647.d ENSGT00390000006885.a #8 ENSGT00390000000360.r.b ##9 ENSGT00390000000360.r.a.a ##9 ENSGT00950000183068.a.a #12 ENSGT00390000018904 #13 ENSGT00940000158132 #14 ENSGT00940000161397 #15 ENSGT00530000063582.a #18 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 Long-tailed chinchilla MODERN SPECIES 301 GAB3 (ENSCLAG00000000759) DKC1 (ENSCLAG00000000720) MPP1 (ENSCLAG00000000595) F8 (ENSCLAG00000000314) FUNDC2 (ENSCLAG00000000230) CMC4 (ENSCLAG00000000217) MTCP1 (ENSCLAG00000000239) #8 BRCC3 (ENSCLAG00000000163) ##9 ENSCLAG00000000125 #12 VBP1 (ENSCLAG00000000117) #13 RAB39B (ENSCLAG00000000113) #14 CLIC2 (ENSCLAG00000000498) #15 TMLHE (ENSCLAG00000000490) #18 SPRY3 (ENSCLAG00000000405) #21 VAMP7 (ENSCLAG00000000352) #22 Guinea pig MODERN SPECIES 148 IKBKG (ENSCPOG00000021550) ENSCPOG00000026136 GAB3 (ENSCPOG00000002987) DKC1 (ENSCPOG00000008825) MPP1 (ENSCPOG00000008826) F8 (ENSCPOG00000007773) FUNDC2 (ENSCPOG00000015635) MTCP1 (ENSCPOG00000034922) #8 CMC4 (ENSCPOG00000033896) ENSCPOG00000001882 ##9 VBP1 (ENSCPOG00000013652) #13 RAB39B (ENSCPOG00000039524) #14 CLIC2 (ENSCPOG00000007641) #15 TMLHE (ENSCPOG00000005415) #18 SPRY3 (ENSCPOG00000038854) #21 VAMP7 (ENSCPOG00000024405) #22 Sciuridae ANCESTRAL SPECIES 62 ENSGT00940000158744 ENSGT00390000005685 ENSGT00940000160294 ENSGT00940000163020 #16 ENSGT00390000016992 #17 ENSGT00940000154783.f ENSGT00390000012647.d ENSGT00390000006885.a #8 ENSGT00390000000360.r.b ##9 ENSGT00950000183068.a.a #12 ENSGT00390000018904 #13 ENSGT00940000158132 #14 ENSGT00940000161397 #15 ENSGT00530000063582.a #18 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 Eurasian red squirrel MODERN SPECIES 156 ENSSVLG00005016435 #16 ENSSVLG00005016424 #17 F8 (ENSSVLG00005016200) ENSSVLG00005016124 MTCP1 (ENSSVLG00005016077) #8 ENSSVLG00005015678 ##9 ENSSVLG00005015476 #13 RAB39B (ENSSVLG00005015437) #14 CLIC2 (ENSSVLG00005015403) #15 ENSSVLG00005015390 #16 ENSSVLG00005015367 #17 ENSSVLG00005015345 #16 TMLHE (ENSSVLG00005015282) #18 ENSSVLG00005015225 SPRY3 (ENSSVLG00005015208) #21 VAMP7 (ENSSVLG00005015109) #22 Marmotini ANCESTRAL SPECIES 23 ENSGT00530000063582.a #18 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 ENSGT00520000057704 ENSGT00940000155742 ENSGT00950000183158.E ENSGT00940000159700 ENSGT00390000006753.B ENSGT00940000161018 ENSGT00530000063851.b ENSGT01050000244857.C.a.b ENSGT00940000162678 ENSGT00950000183007.a.b.g.a.b.a.c.a ENSGT00390000009443 ENSGT00390000006954 ENSGT00390000002792.bb.a ENSGT00950000183027.a.a ENSGT00950000183054.a.a.b Marmotini_b DUPLICATION Marmotini_b ANCESTRAL SPECIES 16 ENSGT00390000011084 ENSGT00390000006935 ENSGT00940000157199 ENSGT00940000159206 ENSGT00390000014940 ENSGT00940000157703 ENSGT00390000003837 ENSGT00940000154412.A ENSGT00520000057704 ENSGT00530000063582.a #18 ENSGT00950000183055.a.b #21 ENSGT00510000047733.i #22 ENSGT00940000155742 ENSGT00950000183158.E ENSGT00940000159700 ENSGT00390000006753.B ENSGT00940000161018 ENSGT00530000063851.b ENSGT01050000244857.C.a.b ENSGT00940000162678 ENSGT00950000183007.a.b.g.a.b.a.c.a ENSGT00950000183007.a.b.g.a.b.a.c.b ENSGT00390000009443 ENSGT00390000006954 ENSGT00390000002792.bb.a ENSGT00950000183027.a.a ENSGT00950000183054.a.a.b Arctic ground squirrel MODERN SPECIES 646 CLIC2 (ENSUPAG00010008229) #15 RAB39B (ENSUPAG00010008223) #14 VBP1 (ENSUPAG00010008210) #13 ENSUPAG00010008195 #12 BRCC3 (ENSUPAG00010008154) ##9 MTCP1 (ENSUPAG00010008144) #8 CMC4 (ENSUPAG00010008129) ENSUPAG00010008121 ENSUPAG00010007355 ENSUPAG00010007335 #17 TMLHE (ENSUPAG00010007316) #18 SPRY3 (ENSUPAG00010007313) #21 VAMP7 (ENSUPAG00010007306) #22 Squirrel MODERN SPECIES 104 PHAX (ENSSTOG00000002037) TEX43 (ENSSTOG00000030805) LMNB1 (ENSSTOG00000003539) MARCHF3 (ENSSTOG00000003582) C5orf63 (ENSSTOG00000023735) MEGF10 (ENSSTOG00000010069) PRRC1 (ENSSTOG00000003266) CTXN3 (ENSSTOG00000001125) CCDC192 (ENSSTOG00000031225) ENSSTOG00000032140 #22 SLC12A2 (ENSSTOG00000003238) FBN2 (ENSSTOG00000000208) SLC27A6 (ENSSTOG00000007927) ISOC1 (ENSSTOG00000023369) ADAMTS19 (ENSSTOG00000027482) MINAR2 (ENSSTOG00000011777) CHSY3 (ENSSTOG00000021825) ZNF300 (ENSSTOG00000030911) ENSSTOG00000030572 ENSSTOG00000025044 ENSSTOG00000024119 ENSSTOG00000030802 DCTN4 (ENSSTOG00000013446) ENSSTOG00000027197 MYOZ3 (ENSSTOG00000013433) Marmotini_b ANCESTRAL SPECIES ENSGT00510000047733.j #22 Squirrel MODERN SPECIES 540 SPRY3 (ENSSTOG00000025454) #21 ENSSTOG00000031326 ENSSTOG00000025036 #22 Alpin marmot DUPLICATION Alpin marmot MODERN SPECIES 170 ENSMMMG00000003890 TMLHE (ENSMMMG00000003868) #18 SPRY3 (ENSMMMG00000003859) #21 VAMP7 (ENSMMMG00000003845) #22 Alpin marmot MODERN SPECIES ENSMMMG00000020156 ENSMMMG00000020141 ZNF608 (ENSMMMG00000020134) GRAMD2B (ENSMMMG00000020111) ALDH7A1 (ENSMMMG00000020066) PHAX (ENSMMMG00000020058) TEX43 (ENSMMMG00000020056) ENSMMMG00000020047 LMNB1 (ENSMMMG00000020037) MARCHF3 (ENSMMMG00000020035) C5orf63 (ENSMMMG00000020014) ENSMMMG00000020005 MEGF10 (ENSMMMG00000019988) PRRC1 (ENSMMMG00000019979) CTXN3 (ENSMMMG00000019975) ENSMMMG00000019969 #22 CCDC192 (ENSMMMG00000019959) SLC12A2 (ENSMMMG00000019843) FBN2 (ENSMMMG00000019800) SLC27A6 (ENSMMMG00000019780) ISOC1 (ENSMMMG00000019777) ADAMTS19 (ENSMMMG00000019725) MINAR2 (ENSMMMG00000019719) ZNF300 (ENSMMMG00000019706) ENSMMMG00000019702 ENSMMMG00000019661 SMIM3 (ENSMMMG00000019655) DCTN4 (ENSMMMG00000019623) RBM22 (ENSMMMG00000019619) MYOZ3 (ENSMMMG00000019613) SYNPO (ENSMMMG00000019608) Laurasiatheria ANCESTRAL SPECIES 26 ENSGT00390000005685 ENSGT00940000160294 ENSGT00940000163020 #16 ENSGT00390000016992 #17 ENSGT00940000154783.f ENSGT00390000012647 ENSGT00390000006885.a #8 ENSGT00390000000360.r ##9 ENSGT00950000183068.a.a #12 ENSGT00390000018904 #13 ENSGT00910000148519 ENSGT00940000158132 #14 ENSGT00940000161397 #15 ENSGT00530000063582.a #18 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 Eulipotyphla ANCESTRAL SPECIES ENSGT00510000047733 #22 Common shrew MODERN SPECIES 1748 VAMP7 (ENSSARG00000004615) #22 Hedgehog MODERN SPECIES 2387 VAMP7 (ENSEEUG00000006561) #22 Laurasiatheria_a ANCESTRAL SPECIES 10 ENSGT00940000163020 #16 ENSGT00390000016992 #17 ENSGT00940000154783.f ENSGT00390000012647 ENSGT00390000006885.a #8 ENSGT00390000000360.r.d ##9 ENSGT00950000183068.a.a #12 ENSGT00390000018904 #13 ENSGT00910000148519 ENSGT00940000158132 #14 ENSGT00940000161397 #15 ENSGT00530000063582.a #18 ENSGT00950000185382 ENSGT00950000183055.a.b #21 ENSGT01030000235464 ENSGT00510000047733 #22 Laurasiatheria_b ANCESTRAL SPECIES 10 ENSGT00940000163020 #16 ENSGT00390000016992 #17 ENSGT00940000154783.f ENSGT00390000012647 ENSGT00390000006885.a #8 ENSGT00390000000360.r.d ##9 ENSGT00950000183068.a.a #12 ENSGT00390000018904 #13 ENSGT00910000148519 ENSGT00940000158132 #14 ENSGT00940000161397 #15 ENSGT00530000063582.a #18 ENSGT00950000185382 ENSGT00950000183055.a.b #21 ENSGT01030000235464 ENSGT00510000047733 #22 Carnivora ANCESTRAL SPECIES 11 ENSGT00940000160294 ENSGT00940000163020 #16 ENSGT00390000016992 #17 ENSGT00940000154783.f ENSGT00390000012647 ENSGT00390000006885.a #8 ENSGT00390000000360.r.d ##9 ENSGT00950000183068.a.a #12 ENSGT00390000018904 #13 ENSGT00910000148519 ENSGT00940000158132 #14 ENSGT00940000161397 #15 ENSGT00530000063582.a #18 ENSGT00950000185382 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 Felidae ANCESTRAL SPECIES 29 ENSGT00390000005685 ENSGT00940000160294 ENSGT00940000163020 #16 ENSGT00390000016992 #17 ENSGT00940000154783.f ENSGT00390000012647 ENSGT00390000006885.a #8 ENSGT00390000000360.r.d ##9 ENSGT00950000183068.a.a #12 ENSGT00390000018904 #13 ENSGT00940000158132 #14 ENSGT00940000161397 #15 ENSGT00530000063582.a #18 ENSGT01010000226875 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 Panthera ANCESTRAL SPECIES 53 ENSGT00940000160294.k ENSGT00940000163020 #16 ENSGT00390000016992 #17 ENSGT00940000160294.l.a ENSGT00940000154783.f ENSGT00390000012647 ENSGT00390000006885.a #8 ENSGT00390000000360.r.d ##9 ENSGT00950000183068.a.a #12 ENSGT00390000018904 #13 ENSGT00940000158132 #14 ENSGT00940000161397 #15 ENSGT00530000063582.a #18 ENSGT01010000226875 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 Panthera_a ANCESTRAL SPECIES 96 ENSGT00530000063582.a #18 ENSGT01010000226875 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 leopard MODERN SPECIES 259 SPRY3 (ENSPPRG00000012079) #21 VAMP7 (ENSPPRG00000004989) #22 ENSPPRG00000004932 ENSPPRG00000004918 lion MODERN SPECIES 88 ENSPLOG00000009920 FUNDC2 (ENSPLOG00000009895) CMC4 (ENSPLOG00000009878) MTCP1 (ENSPLOG00000009860) #8 BRCC3 (ENSPLOG00000009840) ##9 ENSPLOG00000009805 #12 VBP1 (ENSPLOG00000009773) #13 RAB39B (ENSPLOG00000009756) #14 ENSPLOG00000009737 ENSPLOG00000009727 #16 ENSPLOG00000009715 #17 ENSPLOG00000009699 #16 TMLHE (ENSPLOG00000009686) #18 ENSPLOG00000009660 SPRY3 (ENSPLOG00000009644) #21 VAMP7 (ENSPLOG00000009591) #22 GTPBP6 (ENSPLOG00000009500) Tiger MODERN SPECIES 352 SPRY3 (ENSPTIG00000010662) #21 VAMP7 (ENSPTIG00000019664) #22 Cat MODERN SPECIES 252 ENSFCAG00000045185 #17 FUNDC2 (ENSFCAG00000031335) CMC4 (ENSFCAG00000023645) MTCP1 (ENSFCAG00000029629) #8 BRCC3 (ENSFCAG00000019258) ##9 ENSFCAG00000027511 #12 VBP1 (ENSFCAG00000022037) #13 RAB39B (ENSFCAG00000038920) #14 CLIC2 (ENSFCAG00000038526) #15 H2AB2 (ENSFCAG00000044576) #16 ENSFCAG00000045412 #17 H2AB3 (ENSFCAG00000044965) #16 TMLHE (ENSFCAG00000023758) #18 ENSFCAG00000047531 SPRY3 (ENSFCAG00000028342) #21 VAMP7 (ENSFCAG00000025706) #22 ENSFCAG00000048570 ENSFCAG00000010308 Caniformia ANCESTRAL SPECIES 22 ENSGT00940000163020 #16 ENSGT00390000016992 #17 ENSGT00940000160294 ENSGT00940000154783.f ENSGT00390000012647 ENSGT00390000006885.a #8 ENSGT00390000000360.r.d ##9 ENSGT00950000183068.a.a #12 ENSGT00390000018904 #13 ENSGT00910000148519 ENSGT00940000158132 #14 ENSGT00940000161397 #15 ENSGT00530000063582.a #18 ENSGT00950000185382 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 Caniformia_b ANCESTRAL SPECIES 27 ENSGT00390000005685 ENSGT00940000160294 ENSGT00940000154783.f ENSGT00390000006885.a #8 ENSGT00390000000360.r.c.b ##9 ENSGT00390000012647 ENSGT00390000000360.r.d ##9 ENSGT00950000183068.a.a #12 ENSGT00390000018904 #13 ENSGT00910000148519 ENSGT00940000158132 #14 ENSGT00940000161397 #15 ENSGT00940000163020 #16 ENSGT00530000063582.a #18 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 Mustelinae ANCESTRAL SPECIES 272 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 American mink MODERN SPECIES 499 GALNT7 (ENSNVIG00000017803) HMGB2 (ENSNVIG00000017827) SAP30 (ENSNVIG00000017852) SCRG1 (ENSNVIG00000017873) SPRY3 (ENSNVIG00000017883) #21 VAMP7 (ENSNVIG00000017903) #22 Ferret DUPLICATION Ferret MODERN SPECIES 463 ENSMPUG00000019547 ENSMPUG00000019545 ENSMPUG00000016145 ENSMPUG00000019543 GAB3 (ENSMPUG00000016143) MPP1 (ENSMPUG00000016141) F8 (ENSMPUG00000016139) DKC1 (ENSMPUG00000016136) BRCC3 (ENSMPUG00000016134) ##9 ENSMPUG00000016133 #12 ENSMPUG00000016131 #13 RAB39B (ENSMPUG00000016129) #14 CLIC2 (ENSMPUG00000016128) #15 ENSMPUG00000019541 #16 TMLHE (ENSMPUG00000016127) #18 ENSMPUG00000016113 #22 Ferret MODERN SPECIES 465 ENSMPUG00000015066 ENSMPUG00000015069 #22 ENSMPUG00000015070 BAMBI (ENSMPUG00000015071) WAC (ENSMPUG00000015072) ENSMPUG00000015074 MPP7 (ENSMPUG00000015076) ENSMPUG00000015078 Ursidae ANCESTRAL SPECIES ENSGT00510000047733 #22 Ursus ANCESTRAL SPECIES ENSGT00510000047733 #22 American black bear MODERN SPECIES 3234 VAMP7 (ENSUAMG00000027670) #22 Polar bear MODERN SPECIES 140 VAMP7 (ENSUMAG00000017420) #22 Giant Panda MODERN SPECIES 2288 F8 (ENSAMEG00000002491) ENSAMEG00000028778 FUNDC2 (ENSAMEG00000011956) ENSAMEG00000024837 CMC4 (ENSAMEG00000011961) MTCP1 (ENSAMEG00000028878) #8 BRCC3 (ENSAMEG00000011969) ##9 ENSAMEG00000011976 #12 VBP1 (ENSAMEG00000030279) #13 ENSAMEG00000028809 RAB39B (ENSAMEG00000009075) #14 CLIC2 (ENSAMEG00000009077) #15 ENSAMEG00000026904 #16 ENSAMEG00000025129 #16 TMLHE (ENSAMEG00000013789) #18 ENSAMEG00000006387 #22 Canidae ANCESTRAL SPECIES 50 ENSGT00940000158744 ENSGT00940000163020 #16 ENSGT00390000016992 #17 ENSGT00940000160294 ENSGT00940000154783.f ENSGT00390000012647.a ENSGT00390000006885.a #8 ENSGT00390000000360.r.d ##9 ENSGT00950000183068.a.a #12 ENSGT00390000018904 #13 ENSGT00940000158132 #14 ENSGT00940000161397 #15 ENSGT00530000063582.a #18 ENSGT00950000185382 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 Red fox MODERN SPECIES 304 TMLHE (ENSVVUG00000002892) #18 SPRY3 (ENSVVUG00000002880) #21 VAMP7 (ENSVVUG00000002875) #22 Canis_lupus ANCESTRAL SPECIES 22 ENSGT00510000047092.a ENSGT00940000158744 ENSGT00940000163020 #16 ENSGT00390000016992.m #17 ENSGT00940000160294 ENSGT00940000154783.f ENSGT00390000006885.a #8 ENSGT00390000012647.a ENSGT00390000000360.r.c.a ##9 ENSGT00390000018904 #13 ENSGT00940000158132 #14 ENSGT00940000161397 #15 ENSGT00530000063582.a #18 ENSGT00950000185382 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 Dingo MODERN SPECIES 383 ENSCAFG00020008736 #17 F8 (ENSCAFG00020008704) FUNDC2 (ENSCAFG00020008699) MTCP1 (ENSCAFG00020008697) #8 CMC4 (ENSCAFG00020008696) ENSCAFG00020008684 ##9 VBP1 (ENSCAFG00020008675) #13 RAB39B (ENSCAFG00020008673) #14 CLIC2 (ENSCAFG00020008670) #15 ENSCAFG00020008667 #16 ENSCAFG00020008665 #17 ENSCAFG00020008663 #16 TMLHE (ENSCAFG00020008661) #18 ENSCAFG00020008659 SPRY3 (ENSCAFG00020008657) #21 VAMP7 (ENSCAFG00020008654) #22 Dog MODERN SPECIES 144 LAGE3 (ENSCAFG00845029708) ENSCAFG00845029817 DKC1 (ENSCAFG00845029852) MPP1 (ENSCAFG00845029936) F8 (ENSCAFG00845030098) ENSCAFG00845030269 #16 ENSCAFG00845030278 #17 FUNDC2 (ENSCAFG00845030300) ##9 CMC4 (ENSCAFG00845030338) MTCP1 (ENSCAFG00845030350) #8 VBP1 (ENSCAFG00845017867) #13 RAB39B (ENSCAFG00845017965) #14 CLIC2 (ENSCAFG00845017998) #15 ENSCAFG00845018126 #18 SPRY3 (ENSCAFG00845018191) #21 VAMP7 (ENSCAFG00845018278) #22 ENSCAFG00845018459 Laurasiatheria_c ANCESTRAL SPECIES 10 ENSGT00940000160294 ENSGT00940000163020 #16 ENSGT00390000016992 #17 ENSGT00940000154783.f ENSGT00390000012647 ENSGT00390000006885.a #8 ENSGT00390000000360.r.d ##9 ENSGT00950000183068.a.a #12 ENSGT00390000018904 #13 ENSGT00940000158132 #14 ENSGT00940000161397 #15 ENSGT00530000063582.a #18 ENSGT00950000185382 ENSGT00950000183055.a.b #21 ENSGT01030000235464 ENSGT00510000047733 #22 Equus ANCESTRAL SPECIES 52 ENSGT00510000047092 ENSGT00940000158744 ENSGT00390000005685 ENSGT00940000160294 ENSGT00940000154783.f ENSGT00390000012647 ENSGT00390000006885.a #8 ENSGT00390000000360.r.d ##9 ENSGT00390000018904 #13 ENSGT00940000158132 #14 ENSGT00940000161397 #15 ENSGT00530000063582.a #18 ENSGT00950000185382 ENSGT00950000183055.a.b #21 ENSGT01030000235464 ENSGT00510000047733 #22 Horse MODERN SPECIES 480 ENSECAG00000054244 #16 ENSECAG00000029708 #17 ENSECAG00000058802 FUNDC2 (ENSECAG00000026822) MTCP1 (ENSECAG00000043072) #8 BRCC3 (ENSECAG00000021441) ##9 VBP1 (ENSECAG00000001468) #13 ENSECAG00000047761 ENSECAG00000053801 RAB39B (ENSECAG00000007380) #14 CLIC2 (ENSECAG00000008024) #15 TMLHE (ENSECAG00000012334) #18 SPRY3 (ENSECAG00000058224) #21 ENSECAG00000027923 ENSECAG00000030972 VAMP7 (ENSECAG00000014117) #22 Donkey MODERN SPECIES 36 MPP1 (ENSEASG00005007482) SMIM9 (ENSEASG00005025831) ENSEASG00005033689 ENSEASG00005004499 ENSEASG00005034088 ENSEASG00005036735 MTCP1 (ENSEASG00005004486) #8 BRCC3 (ENSEASG00005004482) ##9 VBP1 (ENSEASG00005035328) #13 RAB39B (ENSEASG00005034031) #14 ENSEASG00005024036 ENSEASG00005001752 #16 ENSEASG00005001750 #18 ENSEASG00005038101 #21 ENSEASG00005011059 ENSEASG00005011061 #22 ENSEASG00005036960 ENSEASG00005035090 TCEAL1 (ENSEASG00005025524) MORF4L2 (ENSEASG00005002526) ENSEASG00005002530 TMEM31 (ENSEASG00005002551) PLP1 (ENSEASG00005002561) ENSEASG00005029160 ENSEASG00005038628 MCTS1 (ENSEASG00005023018) CUL4B (ENSEASG00005000286) LAMP2 (ENSEASG00005002906) ENSEASG00005035999 ATP1B4 (ENSEASG00005007677) TMEM255A (ENSEASG00005007676) Chiroptera ANCESTRAL SPECIES 48 ENSGT00390000005685 ENSGT00940000160294 ENSGT00940000163020 #16 ENSGT00390000016992 #17 ENSGT00940000154783.f ENSGT00390000012647 ENSGT00390000006885.a #8 ENSGT00390000000360.r.c.a ##9 ENSGT00390000000360.r.d ##9 ENSGT00950000183068.a.a #12 ENSGT00390000018904 #13 ENSGT00940000158132 #14 ENSGT00940000161397 #15 ENSGT00530000063582.a #18 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 Megabat MODERN SPECIES 4379 VAMP7 (ENSPVAG00000000829) #22 Microchiroptera ANCESTRAL SPECIES 45 ENSGT00510000047092 ENSGT00940000158744 ENSGT00940000160294 ENSGT00390000016992 #17 ENSGT00940000154783.f ENSGT00390000012647 ENSGT00390000006885.a #8 ENSGT00390000000360.r.d ##9 ENSGT00950000183068.a.a #12 ENSGT00390000018904 #13 ENSGT00940000158132 #14 ENSGT00940000161397 #15 ENSGT00940000163020 #16 ENSGT00530000063582.a #18 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 ENSGT00940000162988 ENSGT00940000163246 ENSGT00940000162502 ENSGT00950000182925.D.a.b.a.a.a.a ENSGT00950000182925.D.a.b.b Microbat MODERN SPECIES 1106 GAB3 (ENSMLUG00000007763) DKC1 (ENSMLUG00000011918) MPP1 (ENSMLUG00000011938) F8 (ENSMLUG00000002117) ENSMLUG00000007776 CMC4 (ENSMLUG00000024035) MTCP1 (ENSMLUG00000003916) #8 BRCC3 (ENSMLUG00000005420) ##9 VBP1 (ENSMLUG00000015396) #13 RAB39B (ENSMLUG00000007660) #14 CLIC2 (ENSMLUG00000002374) #15 ENSMLUG00000029102 #16 ENSMLUG00000025178 #17 ENSMLUG00000022365 #16 SPRY3 (ENSMLUG00000022306) #21 VAMP7 (ENSMLUG00000012765) #22 ENSMLUG00000011370 ENSMLUG00000025240 FAAH2 (ENSMLUG00000017725) ENSMLUG00000002732 ENSMLUG00000006656 SPIN3 (ENSMLUG00000015431) ENSMLUG00000004357 UBQLN2 (ENSMLUG00000007552) KLF8 (ENSMLUG00000016695) RRAGB (ENSMLUG00000015720) USP51 (ENSMLUG00000015717) ENSMLUG00000006806 ALAS2 (ENSMLUG00000016305) ENSMLUG00000016298 PFKFB1 (ENSMLUG00000016291) Greater horseshoe bat MODERN SPECIES ENSRFEG00010002379 #16 ENSRFEG00010002358 #17 F8 (ENSRFEG00010002258) FUNDC2 (ENSRFEG00010002186) MTCP1 (ENSRFEG00010000401) #8 BRCC3 (ENSRFEG00010000187) ##9 ENSRFEG00010000146 #12 VBP1 (ENSRFEG00010000140) #13 RAB39B (ENSRFEG00010000135) #14 CLIC2 (ENSRFEG00010000129) #15 ENSRFEG00010000120 #17 ENSRFEG00010000099 #16 ENSRFEG00010000092 #16 TMLHE (ENSRFEG00010000091) #18 SPRY3 (ENSRFEG00010000089) #21 VAMP7 (ENSRFEG00010000088) #22 ENSRFEG00010000087 ENSRFEG00010000086 ENSRFEG00010000085 ENSRFEG00010000084 FAAH2 (ENSRFEG00010000083) ENSRFEG00010000082 ENSRFEG00010000081 AR (ENSRFEG00010000079) OPHN1 (ENSRFEG00010000078) YIPF6 (ENSRFEG00010000077) STARD8 (ENSRFEG00010000076) EFNB1 (ENSRFEG00010000075) PJA1 (ENSRFEG00010000073) NALF2 (ENSRFEG00010000072) EDA (ENSRFEG00010000071) Artiodactyla ANCESTRAL SPECIES 9 ENSGT00940000160294 ENSGT00940000163020 #16 ENSGT00390000016992 #17 ENSGT00940000154783.f ENSGT00390000012647 ENSGT00390000006885.a #8 ENSGT00390000000360.r.d ##9 ENSGT00950000183068.a.a #12 ENSGT00390000018904 #13 ENSGT00940000158132 #14 ENSGT00940000161397 #15 ENSGT00530000063582.a #18 ENSGT00950000185382 ENSGT00950000183055.a.b #21 ENSGT01030000235464 ENSGT00510000047733 #22 Suina ANCESTRAL SPECIES 7 ENSGT00390000012647 ENSGT00390000006885.a #8 ENSGT00390000000360.q.a ##9 ENSGT00950000183068.a.a #12 ENSGT00390000018904 #13 ENSGT00940000158132 #14 ENSGT00390000016992 #17 ENSGT00940000163020 #16 ENSGT00940000160294 ENSGT00390000005685 ENSGT00940000161397 #15 ENSGT00530000063582.a #18 ENSGT00950000185382 ENSGT00950000183055.a.b #21 ENSGT01030000235464 ENSGT00510000047733 #22 Chacoan peccary MODERN SPECIES 44 ENSCWAG00000000488 #16 ENSCWAG00000000499 #17 FUNDC2 (ENSCWAG00000000516) CMC4 (ENSCWAG00000000535) MTCP1 (ENSCWAG00000000545) #8 BRCC3 (ENSCWAG00000000584) ##9 ENSCWAG00000000727 #13 RAB39B (ENSCWAG00000000758) #14 CLIC2 (ENSCWAG00000000773) #15 ENSCWAG00000000788 #16 ENSCWAG00000000796 TMLHE (ENSCWAG00000000814) #18 ENSCWAG00000000835 SPRY3 (ENSCWAG00000000847) #21 ENSCWAG00000000859 VAMP7 (ENSCWAG00000000883) #22 ENSCWAG00000000908 ENSCWAG00000000922 ENSCWAG00000000971 Pig MODERN SPECIES 300 ENSSSCG00000054901 #17 FUNDC2 (ENSSSCG00000012817) CMC4 (ENSSSCG00000062015) MTCP1 (ENSSSCG00000012816) #8 BRCC3 (ENSSSCG00000012813) ##9 ENSSSCG00000012812 #12 VBP1 (ENSSSCG00000012811) #13 RAB39B (ENSSSCG00000024233) #14 ENSSSCG00000057979 #17 ENSSSCG00000055307 #16 CLIC2 (ENSSSCG00000039998) #15 ENSSSCG00000063292 #16 TMLHE (ENSSSCG00000038442) #18 ENSSSCG00000035312 SPRY3 (ENSSSCG00000034345) #21 VAMP7 (ENSSSCG00000029615) #22 Artiodactyla_a ANCESTRAL SPECIES 9 ENSGT00390000005685 ENSGT00940000160294 ENSGT00940000163020 #16 ENSGT00390000016992 #17 ENSGT00940000154783.f ENSGT00390000012647 ENSGT00390000006885.a #8 ENSGT00390000000360.r.d ##9 ENSGT00950000183068.a.a #12 ENSGT00390000018904 #13 ENSGT00940000158132 #14 ENSGT00940000161397 #15 ENSGT00530000063582.a #18 ENSGT00950000185382 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 Camelidae ANCESTRAL SPECIES 107 ENSGT00940000159803 ENSGT00510000047092 ENSGT00940000158744 ENSGT00390000005685 ENSGT00940000160294 ENSGT00940000154783.f ENSGT00390000012647 ENSGT00390000006885.a #8 ENSGT00390000000360.r.d ##9 ENSGT00390000018904 #13 ENSGT00940000158132 #14 ENSGT00940000163020 #16 ENSGT00940000161397 #15 ENSGT00530000063582.a #18 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 Arabian camel MODERN SPECIES 204 ENSCDRG00005017097 DKC1 (ENSCDRG00005017117) MPP1 (ENSCDRG00005017184) SMIM9 (ENSCDRG00005017392) F8 (ENSCDRG00005017422) ENSCDRG00005017538 CMC4 (ENSCDRG00005017574) MTCP1 (ENSCDRG00005017604) #8 BRCC3 (ENSCDRG00005017635) ##9 VBP1 (ENSCDRG00005017794) #13 RAB39B (ENSCDRG00005017901) #14 ENSCDRG00005018049 #16 CLIC2 (ENSCDRG00005018062) #15 TMLHE (ENSCDRG00005018097) #18 SPRY3 (ENSCDRG00005018145) #21 VAMP7 (ENSCDRG00005018159) #22 ENSCDRG00005018222 Alpaca MODERN SPECIES 2991 ENSVPAG00000000273 VAMP7 (ENSVPAG00000000274) #22 Artiodactyla_b ANCESTRAL SPECIES 19 ENSGT00390000005685 ENSGT00940000160294 ENSGT00940000163020 #16 ENSGT00390000016992 #17 ENSGT00940000154783.f ENSGT00390000012647 ENSGT00390000006885.a #8 ENSGT00390000000360.r.d ##9 ENSGT00950000183068.a.a #12 ENSGT00390000018904 #13 ENSGT00940000158132 #14 ENSGT00940000161397 #15 ENSGT00530000063582.a #18 ENSGT00950000185382 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 Pecora ANCESTRAL SPECIES 28 ENSGT00390000005685 ENSGT00940000160294 ENSGT00390000016992 #17 ENSGT00940000154783.f ENSGT00390000012647 ENSGT00390000006885.a #8 ENSGT00390000000360.r.d.b ##9 ENSGT00950000183068.a.a #12 ENSGT00390000018904 #13 ENSGT00940000158132 #14 ENSGT00940000161397 #15 ENSGT00940000163020.bb #16 ENSGT00530000063582.a #18 ENSGT00950000185382 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 ENSGT00530000063872.A ENSGT00940000158229 ENSGT00940000155935 ENSGT00940000162167 ENSGT00940000159444 ENSGT00940000154972 ENSGT00940000161201 ENSGT00940000155374 ENSGT00390000006832 ENSGT00940000160946 ENSGT00530000064765 ENSGT00390000017980 ENSGT00940000160515 ENSGT00940000153299.d ENSGT00940000154344.a Yarkand deer MODERN SPECIES 1323 ENSCHYG00000021132 GAB3 (ENSCHYG00000020865) DKC1 (ENSCHYG00000020555) MPP1 (ENSCHYG00000020123) ENSCHYG00000020059 F8 (ENSCHYG00000019104) FUNDC2 (ENSCHYG00000018987) CMC4 (ENSCHYG00000018917) MTCP1 (ENSCHYG00000018801) #8 ENSCHYG00000018655 ##9 ENSCHYG00000018338 #12 RAB39B (ENSCHYG00000018283) #14 CLIC2 (ENSCHYG00000018163) #15 ENSCHYG00000018139 #16 SPRY3 (ENSCHYG00000018105) #21 VAMP7 (ENSCHYG00000017918) #22 Percora_a ANCESTRAL SPECIES 30 ENSGT00390000005685 ENSGT00940000160294 ENSGT00390000016992 #17 ENSGT00940000154783.f ENSGT00390000012647 ENSGT00390000006885.a #8 ENSGT00390000000360.r.d.b ##9 ENSGT00950000183068.a.a #12 ENSGT00390000018904 #13 ENSGT00940000158132 #14 ENSGT00940000161397 #15 ENSGT00940000163020.bb #16 ENSGT00530000063582.a #18 ENSGT00950000185382 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 ENSGT00530000063872.A ENSGT00940000158229 ENSGT00940000155935 ENSGT00940000162167 ENSGT00940000159444 ENSGT00940000154972 ENSGT00940000161201 ENSGT00940000155374 ENSGT00390000006832 ENSGT00940000160946 ENSGT00530000064765 ENSGT00390000017980 ENSGT00940000160515 ENSGT00940000153299.d ENSGT00940000154344.a Siberian musk deer MODERN SPECIES 67 MPP1 (ENSMMSG00000011258) SMIM9 (ENSMMSG00000011384) F8 (ENSMMSG00000011419) ENSMMSG00000011482 CMC4 (ENSMMSG00000011510) MTCP1 (ENSMMSG00000011532) #8 BRCC3 (ENSMMSG00000011560) ##9 VBP1 (ENSMMSG00000011660) #13 RAB39B (ENSMMSG00000011708) #14 ENSMMSG00000011732 #17 CLIC2 (ENSMMSG00000011739) #15 ENSMMSG00000011761 #16 TMLHE (ENSMMSG00000011781) #18 ENSMMSG00000011850 SPRY3 (ENSMMSG00000011861) #21 VAMP7 (ENSMMSG00000011884) #22 ENSMMSG00000012009 ENSMMSG00000013968 ENSMMSG00000013979 ENSMMSG00000014004 Bovidae ANCESTRAL SPECIES 29 ENSGT00940000160294 ENSGT00390000016992.s #17 ENSGT00940000154783.f ENSGT00390000012647 ENSGT00390000006885.a #8 ENSGT00390000000360.r.d.b ##9 ENSGT00950000183068.a.a #12 ENSGT00390000018904 #13 ENSGT00940000158132 #14 ENSGT00390000016992.t #17 ENSGT00940000163020.bb #16 ENSGT00940000161397 #15 ENSGT00530000063582.a #18 ENSGT00950000185382 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 ENSGT00940000161825.v.a.a.b ENSGT00960000188264.C ENSGT00530000063872.A ENSGT00940000158229 ENSGT00940000155935 ENSGT00940000162167 ENSGT00940000159444 ENSGT00940000154972 ENSGT00940000161201 ENSGT00940000155374 ENSGT00390000006832 ENSGT00940000160946 ENSGT00530000064765 ENSGT00390000017980 ENSGT00940000160515 Caprinae ANCESTRAL SPECIES 53 ENSGT00390000005685 ENSGT00940000160294 ENSGT00390000016992.s #17 ENSGT00940000154783.f ENSGT00390000012647 ENSGT00390000006885.a #8 ENSGT00390000000360.r.d.b ##9 ENSGT00950000183068.a.a #12 ENSGT00390000018904 #13 ENSGT00940000158132 #14 ENSGT00390000016992.t #17 ENSGT00940000163020.bb #16 ENSGT00940000161397 #15 ENSGT00950000183055.a.b #21 ENSGT00530000063582.a #18 ENSGT00510000047733 #22 ENSGT00940000161825.v.a.a.b ENSGT00960000188264.C Goat MODERN SPECIES 36 ENSCHIG00000015970 #12 VBP1 (ENSCHIG00000019363) #13 RAB39B (ENSCHIG00000000158) #14 ENSCHIG00000018644 #17 ENSCHIG00000000266 CLIC2 (ENSCHIG00000016619) #15 ENSCHIG00000000748 ##24 TMLHE (ENSCHIG00000000055) #18 VAMP7 (ENSCHIG00000000128) #22 Rambouillet Sheep MODERN SPECIES 205 MPP1 (ENSOARG00020015726) SMIM9 (ENSOARG00020015879) F8 (ENSOARG00020015985) ENSOARG00020016962 #17 FUNDC2 (ENSOARG00020017001) CMC4 (ENSOARG00020017081) MTCP1 (ENSOARG00020017110) #8 BRCC3 (ENSOARG00020017169) ##9 VBP1 (ENSOARG00020017496) #13 RAB39B (ENSOARG00020017597) #14 ENSOARG00020017633 #17 ENSOARG00020017655 #16 RIDA (ENSOARG00020017680) CLIC2 (ENSOARG00020017713) #15 SPRY3 (ENSOARG00020017989) #21 VAMP7 (ENSOARG00020018024) #22 ENSOARG00020018236 ENSOARG00020018387 ENSOARG00020018399 ENSOARG00020018429 ENSOARG00020018446 ENSOARG00020018476 ENSOARG00020018489 ENSOARG00020018504 ENSOARG00020018525 ENSOARG00020018581 ENSOARG00020018615 ENSOARG00020018678 ENSOARG00020018703 ENSOARG00020018745 ENSOARG00020018798 Bovinae ANCESTRAL SPECIES 42 ENSGT00940000158744 ENSGT00940000160294 ENSGT00390000016992.s #17 ENSGT00940000154783.f ENSGT00390000012647 ENSGT00390000006885.a #8 ENSGT00390000000360.r.d.b ##9 ENSGT00950000183068.a.a #12 ENSGT00390000018904 #13 ENSGT00940000158132 #14 ENSGT00390000016992.t #17 ENSGT00940000161397 #15 ENSGT00530000063582.a #18 ENSGT00950000185382 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 ENSGT00940000161825.v.a.a.b ENSGT00390000012182.i.a ENSGT00940000161825.v.a.b ENSGT00910000144363.g.a.a.a.a.a ENSGT00530000063872.A ENSGT00940000158229 ENSGT00940000155935 ENSGT00940000162167 ENSGT00940000159444 ENSGT00940000154972 ENSGT00940000161201 ENSGT00940000155374 ENSGT00390000006832 ENSGT00940000160946 ENSGT00530000064765 Bos ANCESTRAL SPECIES 36 ENSGT00940000160294 ENSGT00390000016992.s #17 ENSGT00940000154783.f ENSGT00390000012647 ENSGT00390000006885.a #8 ENSGT00390000000360.r.d.b ##9 ENSGT00950000183068.a.a #12 ENSGT00390000018904 #13 ENSGT00390000000673.b.yb.a ENSGT00940000158132 #14 ENSGT00390000016992.t #17 ENSGT00940000161397 #15 ENSGT00530000063582.a #18 ENSGT00950000185382 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 ENSGT00940000161825.v.a.a.b ENSGT00390000012182.i.a.a.a ENSGT00390000012182.i.b ENSGT00940000161825.v.b ENSGT00530000063872.A ENSGT00940000158229 ENSGT00940000155935 ENSGT00940000162167 ENSGT01030000235010.e.b ENSGT00940000159444 ENSGT00940000154972 ENSGT00940000161201 ENSGT00940000155374 ENSGT00390000006832 ENSGT00940000160946 Bos_a ANCESTRAL SPECIES 39 ENSGT00510000047092 ENSGT00940000158744 ENSGT00940000160294 ENSGT00940000154783.f ENSGT00390000012647 ENSGT00390000006885.a #8 ENSGT00390000000360.r.d.b ##9 ENSGT00950000183068.a.a #12 ENSGT00390000018904 #13 ENSGT00390000000673.b.yb.a ENSGT00940000158132 #14 ENSGT00390000016992.t #17 ENSGT00940000161397 #15 ENSGT00530000063582.a #18 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 ENSGT00940000161825.v.a.a.b ENSGT00390000012182.i.a.a.a Domestic yak MODERN SPECIES 69 ENSBGRG00000017378 #17 F8 (ENSBGRG00000024985) FUNDC2 (ENSBGRG00000024951) ENSBGRG00000024933 MTCP1 (ENSBGRG00000024911) #8 BRCC3 (ENSBGRG00000024843) ##9 ENSBGRG00000024824 ENSBGRG00000024794 #12 VBP1 (ENSBGRG00000024762) #13 ENSBGRG00000024744 RAB39B (ENSBGRG00000024738) #14 ENSBGRG00000024735 #17 CLIC2 (ENSBGRG00000024695) #15 TMLHE (ENSBGRG00000024645) #18 SPRY3 (ENSBGRG00000024611) #21 VAMP7 (ENSBGRG00000024507) #22 ENSBGRG00000024491 ENSBGRG00000024481 ENSBGRG00000024460 ENSBGRG00000024444 ENSBGRG00000024428 ENSBGRG00000024396 MTM1 (ENSBGRG00000024246) MTMR1 (ENSBGRG00000023860) CD99L2 (ENSBGRG00000023715) ENSBGRG00000023671 GPR50 (ENSBGRG00000023639) ENSBGRG00000023594 ENSBGRG00000023537 PRRG3 (ENSBGRG00000023519) ENSBGRG00000023506 Wild yak MODERN SPECIES 1152 CLIC2 (ENSBMUG00000010104) #15 TMLHE (ENSBMUG00000010079) #18 SPRY3 (ENSBMUG00000010058) #21 VAMP7 (ENSBMUG00000010034) #22 ENSBMUG00000010013 ENSBMUG00000010002 Bos_b ANCESTRAL SPECIES 31 ENSGT00940000160294 ENSGT00390000016992.s #17 ENSGT00940000154783.f ENSGT00390000012647 ENSGT00390000006885.a #8 ENSGT00390000000360.r.d.b ##9 ENSGT00950000183068.a.a #12 ENSGT00390000018904 #13 ENSGT00390000000673.b.yb.a ENSGT00940000158132 #14 ENSGT00390000016992.t #17 ENSGT00940000161397 #15 ENSGT00530000063582.a #18 ENSGT00950000185382 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 ENSGT00940000161825.v.a.a.b ENSGT00390000012182.i.a.a.a ENSGT00390000012182.i.b ENSGT00940000161825.v.b ENSGT00530000063872.A ENSGT00940000158229 ENSGT00940000155935 ENSGT00940000162167 ENSGT01030000235010.e.b ENSGT00940000159444 ENSGT00940000154972 ENSGT00940000161201 ENSGT00940000155374 ENSGT00390000006832 ENSGT00940000160946 Cow MODERN SPECIES 177 MPP1 (ENSBTAG00000013046) ENSBTAG00000033167 #17 F8 (ENSBTAG00000010726) FUNDC2 (ENSBTAG00000016977) CMC4 (ENSBTAG00000007813) MTCP1 (ENSBTAG00000045697) #8 BRCC3 (ENSBTAG00000007817) ##9 ENSBTAG00000011144 #12 VBP1 (ENSBTAG00000017265) #13 ENSBTAG00000052586 RAB39B (ENSBTAG00000019779) #14 ENSBTAG00000023978 #17 CLIC2 (ENSBTAG00000010948) #15 TMLHE (ENSBTAG00000011648) #18 SPRY3 (ENSBTAG00000010245) #21 VAMP7 (ENSBTAG00000049615) #22 ZNF185 (ENSBTAG00000005776) NSDHL (ENSBTAG00000009231) CETN2 (ENSBTAG00000007844) GABRQ (ENSBTAG00000013002) ENSBTAG00000048998 GABRA3 (ENSBTAG00000006691) ENSBTAG00000012748 GABRE (ENSBTAG00000013548) CNGA2 (ENSBTAG00000020725) FATE1 (ENSBTAG00000006820) PRRG3 (ENSBTAG00000009775) ENSBTAG00000050821 VMA21 (ENSBTAG00000006296) GPR50 (ENSBTAG00000005950) HMGB3 (ENSBTAG00000005150) Hybrid Bos Indicus MODERN SPECIES 315 FUNDC2 (ENSBIXG00005006322) CMC4 (ENSBIXG00005001057) MTCP1 (ENSBIXG00005011273) #8 BRCC3 (ENSBIXG00005001036) ##9 ENSBIXG00005011073 #12 VBP1 (ENSBIXG00005011035) #13 ENSBIXG00005010980 RAB39B (ENSBIXG00005010970) #14 ENSBIXG00005010957 #17 ENSBIXG00005000980 CLIC2 (ENSBIXG00005010938) #15 ENSBIXG00005010929 TMLHE (ENSBIXG00005000964) #18 ENSBIXG00005010854 SPRY3 (ENSBIXG00005010830) #21 VAMP7 (ENSBIXG00005010795) #22 ENSBIXG00005010749 ENSBIXG00005010717 ENSBIXG00005000928 ENSBIXG00005000922 ENSBIXG00005010675 ZNF185 (ENSBIXG00005000655) NSDHL (ENSBIXG00005010561) CETN2 (ENSBIXG00005010528) GABRQ (ENSBIXG00005010442) ENSBIXG00005000879 GABRA3 (ENSBIXG00005001938) MAGEA10 (ENSBIXG00005029058) GABRE (ENSBIXG00005029043) CNGA2 (ENSBIXG00005002074) ENSBIXG00005028994 Cetacea ANCESTRAL SPECIES 19 ENSGT00940000160294 ENSGT00940000163020 #16 ENSGT00390000016992 #17 ENSGT00940000154783.f.d.a ENSGT00390000012647 ENSGT00390000006885.a #8 ENSGT00390000000360.q.a ##9 ENSGT00390000000360.r.d ##9 ENSGT00950000183068.a.a #12 ENSGT00390000018904 #13 ENSGT00940000158132 #14 ENSGT00940000161397 #15 ENSGT00530000063582.a #18 ENSGT00950000185382 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 Blue whale MODERN SPECIES 40 ENSBMSG00010021592 #17 ENSBMSG00010021604 CMC4 (ENSBMSG00010021610) MTCP1 (ENSBMSG00010021613) #8 BRCC3 (ENSBMSG00010021621) ##9 ENSBMSG00010021641 #12 VBP1 (ENSBMSG00010021651) #13 RAB39B (ENSBMSG00010021663) #14 ENSBMSG00010021665 #17 ENSBMSG00010021668 #16 CLIC2 (ENSBMSG00010021672) #15 ENSBMSG00010021679 #16 TMLHE (ENSBMSG00010021682) #18 ENSBMSG00010021687 SPRY3 (ENSBMSG00010021692) #21 VAMP7 (ENSBMSG00010021700) #22 Odontoceti ANCESTRAL SPECIES 19 ENSGT00940000160294 ENSGT00940000163020 #16 ENSGT00390000016992 #17 ENSGT00940000154783.f.d.a ENSGT00390000012647 ENSGT00390000006885.a #8 ENSGT00390000000360.q.a ##9 ENSGT00390000000360.r.d ##9 ENSGT00950000183068.a.a #12 ENSGT00390000018904 #13 ENSGT00940000158132 #14 ENSGT00940000161397 #15 ENSGT00530000063582.a #18 ENSGT00950000185382 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 Sperm whale DUPLICATION Sperm whale MODERN SPECIES 12 FUT11 (ENSPCTG00005019182) SEC24C (ENSPCTG00005019137) SYNPO2L (ENSPCTG00005019094) MYOZ1 (ENSPCTG00005019062) USP54 (ENSPCTG00005018794) PPP3CB (ENSPCTG00005018219) ENSPCTG00005018112 ANXA7 (ENSPCTG00005018039) ENSPCTG00005018005 CFAP70 (ENSPCTG00005017829) MRPS16 (ENSPCTG00005017751) DNAJC9 (ENSPCTG00005017690) FAM149B1 (ENSPCTG00005017627) ECD (ENSPCTG00005017574) NUDT13 (ENSPCTG00005017423) ENSPCTG00005017352 #22 P4HA1 (ENSPCTG00005017193) PLA2G12B (ENSPCTG00005017127) OIT3 (ENSPCTG00005016947) ENSPCTG00005016898 MCU (ENSPCTG00005016821) MICU1 (ENSPCTG00005016668) ANAPC16 (ENSPCTG00005016583) ASCC1 (ENSPCTG00005016464) ENSPCTG00005016423 CHST3 (ENSPCTG00005016377) VSIR (ENSPCTG00005016352) C20H10orf105 (ENSPCTG00005016335) ENSPCTG00005016034 SLC29A3 (ENSPCTG00005015832) PCBD1 (ENSPCTG00005015772) Sperm whale MODERN SPECIES 13 F8 (ENSPCTG00005015296) ENSPCTG00005015667 #16 F8A1 (ENSPCTG00005015687) #17 FUNDC2 (ENSPCTG00005015711) CMC4 (ENSPCTG00005015746) MTCP1 (ENSPCTG00005015780) #8 BRCC3 (ENSPCTG00005015822) ##9 VBP1 (ENSPCTG00005016073) #13 RAB39B (ENSPCTG00005016182) #14 ENSPCTG00005016223 #16 CLIC2 (ENSPCTG00005016241) #15 ENSPCTG00005016292 #16 TMLHE (ENSPCTG00005016307) #18 ENSPCTG00005016361 SPRY3 (ENSPCTG00005016380) #21 ENSPCTG00005016415 #22 Odontoceti_a ANCESTRAL SPECIES 21 ENSGT00940000160294 ENSGT00940000163020 #16 ENSGT00390000016992 #17 ENSGT00940000154783.f.d.a ENSGT00390000012647 ENSGT00390000006885.a #8 ENSGT00390000000360.q.a ##9 ENSGT00390000000360.r.d ##9 ENSGT00950000183068.a.a #12 ENSGT00390000018904 #13 ENSGT00940000158132 #14 ENSGT00940000161397 #15 ENSGT00530000063582.a #18 ENSGT00950000185382 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 Dolphin MODERN SPECIES 6836 VAMP7 (ENSTTRG00000010643) #22 Odontoceti_b ANCESTRAL SPECIES 17 ENSGT00390000016992.x #17 ENSGT00940000154783.f.d.a ENSGT00390000012647 ENSGT00390000006885.a #8 ENSGT00390000000360.q.a ##9 ENSGT00390000000360.r.d ##9 ENSGT00950000183068.a.a #12 ENSGT00390000018904 #13 ENSGT00940000158132 #14 ENSGT00390000016992.w #17 ENSGT00940000163020.z #16 ENSGT00940000161397 #15 ENSGT00530000063582.a #18 ENSGT00950000185382 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 Monodontidae ANCESTRAL SPECIES 19 ENSGT00940000163020.z #16 ENSGT00390000016992.w #17 ENSGT00940000154783.f.d.a ENSGT00390000012647 ENSGT00390000006885.a #8 ENSGT00390000000360.q.a ##9 ENSGT00950000183068.a.a #12 ENSGT00390000018904 #13 ENSGT00940000158132 #14 ENSGT00390000016992.x #17 ENSGT00940000161397 #15 ENSGT00940000163020.y #16 ENSGT00530000063582.a #18 ENSGT00950000185382 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 Narwhal MODERN SPECIES 310 F8 (ENSMMNG00015013732) ENSMMNG00015013765 #16 ENSMMNG00015013774 ENSMMNG00015013784 CMC4 (ENSMMNG00015013793) MTCP1 (ENSMMNG00015013799) #8 BRCC3 (ENSMMNG00015013819) ##9 ENSMMNG00015013846 #12 VBP1 (ENSMMNG00015013861) #13 RAB39B (ENSMMNG00015013876) #14 CLIC2 (ENSMMNG00015013884) #15 ENSMMNG00015013897 #16 TMLHE (ENSMMNG00015013910) #18 ENSMMNG00015013925 SPRY3 (ENSMMNG00015013931) #21 VAMP7 (ENSMMNG00015013948) #22 DUSP22 (ENSMMNG00015013987) IRF4 (ENSMMNG00015014004) EXOC2 (ENSMMNG00015014030) FOXF2 (ENSMMNG00015014085) FOXC1 (ENSMMNG00015014093) GMDS (ENSMMNG00015014105) ENSMMNG00015010189 MYLK4 (ENSMMNG00015010218) ENSMMNG00015010243 WRNIP1 (ENSMMNG00015010266) ENSMMNG00015010309 NQO2 (ENSMMNG00015010357) RIPK1 (ENSMMNG00015010383) BPHL (ENSMMNG00015010397) TUBB2B (ENSMMNG00015010464) Beluga whale MODERN SPECIES 139 F8 (ENSDLEG00000011690) ENSDLEG00000011965 #16 ENSDLEG00000011977 #17 FUNDC2 (ENSDLEG00000011985) CMC4 (ENSDLEG00000011999) MTCP1 (ENSDLEG00000012008) #8 BRCC3 (ENSDLEG00000012025) ##9 ENSDLEG00000012046 #12 VBP1 (ENSDLEG00000012075) #13 RAB39B (ENSDLEG00000012091) #14 ENSDLEG00000012094 #17 CLIC2 (ENSDLEG00000012100) #15 TMLHE (ENSDLEG00000012114) #18 ENSDLEG00000012124 SPRY3 (ENSDLEG00000012130) #21 VAMP7 (ENSDLEG00000012138) #22 Vaquita MODERN SPECIES 34 ENSPSNG00000022476 #17 ENSPSNG00000022480 MTCP1 (ENSPSNG00000022484) #8 CMC4 (ENSPSNG00000013473) BRCC3 (ENSPSNG00000013597) ##9 ENSPSNG00000013729 #12 VBP1 (ENSPSNG00000013871) #13 RAB39B (ENSPSNG00000014023) #14 ENSPSNG00000014068 #17 CLIC2 (ENSPSNG00000014084) #15 ENSPSNG00000014126 #16 TMLHE (ENSPSNG00000014201) #18 ENSPSNG00000014251 ENSPSNG00000014269 SPRY3 (ENSPSNG00000014299) #21 VAMP7 (ENSPSNG00000014345) #22 Atlantogenata ANCESTRAL SPECIES 70 ENSGT00940000159803 ENSGT00510000047092 ENSGT00940000158744 ENSGT00390000005685 ENSGT00390000016992 #17 ENSGT00940000160294 ENSGT00940000154783 ENSGT00390000012647 ENSGT00390000006885.a #8 ENSGT00390000000360 #9 ENSGT00950000183068.a.a #12 ENSGT00390000018904 #13 ENSGT00940000158132 #14 ENSGT00940000161397 #15 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 Xenarthra ANCESTRAL SPECIES 1902 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 Armadillo MODERN SPECIES 645 SPRY3 (ENSDNOG00000000635) #21 VAMP7 (ENSDNOG00000037896) #22 Sloth MODERN SPECIES 2074 ENSCHOG00000004846 #22 Afrotheria ANCESTRAL SPECIES 82 ENSGT00510000047092 ENSGT00940000158744 ENSGT00390000005685 ENSGT00390000016992 #17 ENSGT00940000160294 ENSGT00940000154783 ENSGT00390000012647 ENSGT00390000006885.a #8 ENSGT00390000000360 #9 ENSGT00390000018904 #13 ENSGT00940000158132 #14 ENSGT00940000161397 #15 ENSGT00940000163020 #16 ENSGT00530000063582.a #18 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 Tenrec MODERN SPECIES 2296 VAMP7 (ENSETEG00000010894) #22 Afrotheria_a ANCESTRAL SPECIES 81 ENSGT00510000047092 ENSGT00940000158744 ENSGT00390000005685 ENSGT00390000016992 #17 ENSGT00940000160294 ENSGT00940000154783 ENSGT00390000012647 ENSGT00390000006885.a #8 ENSGT00390000000360 #9 ENSGT00390000018904 #13 ENSGT00940000158132 #14 ENSGT00940000161397 #15 ENSGT00940000163020 #16 ENSGT00530000063582.a #18 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 Elephant MODERN SPECIES 50 MPP1 (ENSLAFG00000011928) SMIM9 (ENSLAFG00000032056) ENSLAFG00000003610 #17 F8 (ENSLAFG00000015274) ENSLAFG00000015289 CMC4 (ENSLAFG00000020599) MTCP1 (ENSLAFG00000028512) #8 BRCC3 (ENSLAFG00000013564) #9 VBP1 (ENSLAFG00000016507) #13 RAB39B (ENSLAFG00000030959) #14 CLIC2 (ENSLAFG00000011243) #15 ENSLAFG00000032481 #16 TMLHE (ENSLAFG00000011892) #18 ENSLAFG00000012249 SPRY3 (ENSLAFG00000029407) #21 VAMP7 (ENSLAFG00000018052) #22 ENSLAFG00000027692 Hyrax MODERN SPECIES 1858 ENSPCAG00000003747 #22 Marsupialia ANCESTRAL SPECIES 39 ENSGT00940000153700.jc.a.a.a.a ENSGT00940000162502 ENSGT00530000063582.a #18 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 ENSGT00390000017860.a.a ENSGT00390000016992 #17 ENSGT00940000161397 #15 ENSGT00940000158132 #14 ENSGT00390000018904 #13 ENSGT00950000183068.a.a #12 ENSGT00390000000360 #9 ENSGT00390000006885.a #8 ENSGT00390000012647 ENSGT00940000154783 ENSGT00940000160294 ENSGT00940000158744 ENSGT00510000047092 ENSGT00940000159803 ENSGT01100000263570.B.z Marsupialia_b ANCESTRAL SPECIES 35 ENSGT00940000153700.jc.a.a.a.a ENSGT00940000162502 ENSGT00530000063582.a #18 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 ENSGT00390000017860.a.a ENSGT00390000016992 #17 ENSGT00940000161397 #15 ENSGT00940000158132 #14 ENSGT00390000018904.xb #13 ENSGT00950000183068.a.a #12 ENSGT00390000000360 #9 ENSGT00390000006885.a #8 ENSGT00390000012647 ENSGT00940000154783 ENSGT00940000160294 ENSGT00940000158744 ENSGT00510000047092 ENSGT00940000159803 ENSGT01100000263570.B.z Diprotodontia ANCESTRAL SPECIES 79 ENSGT00940000162502 ENSGT00530000063582.a #18 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 ENSGT00390000017860.a.a ENSGT00390000016992 #17 ENSGT00940000161397 #15 ENSGT00940000158132 #14 ENSGT00390000018904.xb #13 ENSGT00950000183068.a.a #12 ENSGT00390000000360 #9 ENSGT00390000006885.a #8 ENSGT00390000012647 ENSGT00940000154783 ENSGT00940000160294 ENSGT00940000158744 ENSGT00510000047092 ENSGT00940000159803 ENSGT01030000240148 Diprotodontia_a ANCESTRAL SPECIES 74 ENSGT00940000162502 ENSGT00530000063582.a #18 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 ENSGT00390000017860.a.a ENSGT00390000016992 #17 ENSGT00940000161397 #15 ENSGT00940000158132 #14 ENSGT00390000018904.xb #13 ENSGT00950000183068.a.a #12 ENSGT00390000000360 #9 ENSGT00390000006885.a #8 ENSGT00390000012647 ENSGT00940000154783 ENSGT00940000160294 ENSGT00940000158744 ENSGT00510000047092 ENSGT00940000159803 ENSGT01030000240148 Common wonbat MODERN SPECIES 206 ENSVURG00010021065 ENSVURG00010021068 ENSVURG00010021072 ENSVURG00010021076 FAAH2 (ENSVURG00010021078) TMLHE (ENSVURG00010021084) #18 SPRY3 (ENSVURG00010021087) #21 ENSVURG00010021091 #22 ENSVURG00010021094 ENSVURG00010021099 #17 CLIC2 (ENSVURG00010021105) #15 ENSVURG00010021106 koala MODERN SPECIES 275 ENSPCIG00000032358 ENSPCIG00000029323 TMLHE (ENSPCIG00000029328) #18 SPRY3 (ENSPCIG00000029329) #21 VAMP7 (ENSPCIG00000021213) #22 ENSPCIG00000021211 ENSPCIG00000029331 #17 ENSPCIG00000029332 #15 RAB39B (ENSPCIG00000029333) #14 ENSPCIG00000029334 #13 ENSPCIG00000029335 #12 ENSPCIG00000029336 #9 MTCP1 (ENSPCIG00000029337) #8 CMC4 (ENSPCIG00000012830) FUNDC2 (ENSPCIG00000029338) F8 (ENSPCIG00000029339) MPP1 (ENSPCIG00000016705) DKC1 (ENSPCIG00000016706) GAB3 (ENSPCIG00000027141) ENSPCIG00000027140 Wallaby MODERN SPECIES 3179 VAMP7 (ENSMEUG00000015172) #22 Tasmanian devil MODERN SPECIES 21 ENSSHAG00000023331 ENSSHAG00000022828 ENSSHAG00000028949 ENSSHAG00000006530 ENSSHAG00000003260 ENSSHAG00000005152 ENSSHAG00000000642 ENSSHAG00000006338 ENSSHAG00000023175 ENSSHAG00000021768 ENSSHAG00000028800 ENSSHAG00000023544 ENSSHAG00000028680 ENSSHAG00000005076 #18 ENSSHAG00000027931 #21 ENSSHAG00000005274 #22 ENSSHAG00000027010 ENSSHAG00000003431 ENSSHAG00000002237 #15 ENSSHAG00000030857 RAB39B (ENSSHAG00000023435) #14 ENSSHAG00000002823 #13 ENSSHAG00000000499 #12 ENSSHAG00000005392 #9 ENSSHAG00000031991 FUNDC2 (ENSSHAG00000004767) ENSSHAG00000000596 MPP1 (ENSSHAG00000003104) ENSSHAG00000002463 ENSSHAG00000000766 GAB3 (ENSSHAG00000005588) Opossum MODERN SPECIES 627 ENSMODG00000039236 ENSMODG00000009196 ENSMODG00000009214 ENSMODG00000009225 GAB3 (ENSMODG00000009236) ENSMODG00000048987 DKC1 (ENSMODG00000009243) MPP1 (ENSMODG00000009267) ENSMODG00000050119 ENSMODG00000009313 ENSMODG00000048424 FAAH2 (ENSMODG00000006103) ENSMODG00000006108 TMLHE (ENSMODG00000006132) #18 ENSMODG00000025401 #21 VAMP7 (ENSMODG00000006160) #22 ENSMODG00000028790 ENSMODG00000006206 #17 CLIC2 (ENSMODG00000047773) #15 ENSMODG00000040079 ENSMODG00000004295 ENSMODG00000011427 ENSMODG00000027717 ACSL4 (ENSMODG00000011470) ENSMODG00000037806 TMEM164 (ENSMODG00000025395) AMMECR1 (ENSMODG00000011480) ENSMODG00000029221 ENSMODG00000011492 ENSMODG00000045883 ENSMODG00000011507 Platypus MODERN SPECIES 17 CLIC2 (ENSOANG00000048106) #15 FAAH2 (ENSOANG00000045002) ENSOANG00000008721 BRCC3 (ENSOANG00000008720) #9 MTCP1 (ENSOANG00000036945) #8 CMC4 (ENSOANG00000008719) FUNDC2 (ENSOANG00000037235) ENSOANG00000008717 MPP1 (ENSOANG00000008715) DKC1 (ENSOANG00000008713) TMLHE (ENSOANG00000008712) #18 SPRY3 (ENSOANG00000050813) #21 ENSOANG00000036694 ENSOANG00000050513 ENSOANG00000008708 VAMP7 (ENSOANG00000008702) #22 ENSOANG00000008707 ENSOANG00000048871 ENSOANG00000039157 NSDHL (ENSOANG00000008705) CETN1 (ENSOANG00000045309) ENSOANG00000038565 ENSOANG00000028699 ENSOANG00000044598 ENSOANG00000014487 ENSOANG00000014488 ENSOANG00000014489 ENSOANG00000016041 ENSOANG00000009600 ENSOANG00000001989 ENSOANG00000041690 Sauria ANCESTRAL SPECIES 35 ENSGT00940000162502 ENSGT00530000063484.b.a ENSGT00390000000360 #9 ENSGT00390000006885 #8 ENSGT00390000012647 ENSGT00940000154783 ENSGT00940000160294 ENSGT00940000158744 ENSGT00510000047092 ENSGT00390000016992 #17 ENSGT00530000063582.a #18 ENSGT00950000183055.a.b #21 ENSGT00940000165106 ENSGT01100000263512.a.a.a.a ENSGT00550000075160 ENSGT00510000047733 #22 ENSGT00390000017860.a.a ENSGT00530000063872.A ENSGT00940000158229 ENSGT00940000157209.ib.a ENSGT00940000157209.ib.b ENSGT00390000003706.a.b.a ENSGT00390000015364.a.b.a ENSGT00390000015364.a.b.b ENSGT00390000015700.b ENSGT00940000153941.a.b ENSGT00940000166719 ENSGT00940000163673 ENSGT00940000164016 ENSGT00940000161062 ENSGT00510000046908.b Lepidosauria ANCESTRAL SPECIES 41 ENSGT00530000063484.b.a ENSGT00390000000360 #9 ENSGT00390000006885 #8 ENSGT00390000012647 ENSGT00940000154783 ENSGT00940000160294.j.a ENSGT00940000158744 ENSGT00510000047092 ENSGT00390000016992 #17 ENSGT01060000248589.C ENSGT00530000063582.a #18 ENSGT00950000183055.a.b #21 ENSGT00940000165106 ENSGT01100000263512.a.a.a.a ENSGT00550000075160 ENSGT00510000047733 #22 ENSGT00390000017860.a.a ENSGT00530000063872.A ENSGT00940000158229 ENSGT00940000157209.ib.a ENSGT00390000001134.b ENSGT00950000182994.A ENSGT00390000000141 ENSGT00940000159611 ENSGT00520000059318 ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a ENSGT00940000164237 ENSGT00390000008591 ENSGT00940000159242 ENSGT00940000161429 tuatara MODERN SPECIES 1596 ENSSPUG00000005801 POLR1D (ENSSPUG00000005786) VAMP7 (ENSSPUG00000005776) #22 ENSSPUG00000005744 NSDHL (ENSSPUG00000005730) ENSSPUG00000005716 ENSSPUG00000005710 GPR119 (ENSSPUG00000005701) ENOX2 (ENSSPUG00000005666) GLOD5 (ENSSPUG00000005659) ENSSPUG00000005600 SLC25A14 (ENSSPUG00000005586) ENSSPUG00000005578 RAB33A (ENSSPUG00000005574) MARS2 (ENSSPUG00000005569) ENSSPUG00000005555 AIFM1 (ENSSPUG00000005531) BCORL1 (ENSSPUG00000005508) Episquamata ANCESTRAL SPECIES 14 ENSGT00940000162502 ENSGT00530000063484.b.a ENSGT00390000000360 #9 ENSGT00390000006885 #8 ENSGT00390000012647 ENSGT00940000154783 ENSGT00940000160294.j.a ENSGT00940000158744 ENSGT00510000047092 ENSGT00390000016992 #17 ENSGT00530000063582.a #18 ENSGT00950000183055.a.b #21 ENSGT00940000165106 ENSGT01100000263512.a.a.a.a ENSGT00550000075160 ENSGT00510000047733 #22 ENSGT00390000017860.a.a ENSGT00530000063872.A ENSGT00940000158229 ENSGT00940000157209.ib.a ENSGT00390000001134.b ENSGT00950000182994.A ENSGT00390000000141 ENSGT00940000159611 ENSGT00520000059318 ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a ENSGT00940000164237.`b ENSGT00390000008591 ENSGT00940000159242 ENSGT00940000161429 Toxicofera ANCESTRAL SPECIES 17 ENSGT00530000063484.b.a ENSGT00390000000360 #9 ENSGT00390000006885 #8 ENSGT00390000012647 ENSGT00940000154783 ENSGT00940000160294.j.a ENSGT00940000158744 ENSGT00510000047092 ENSGT00390000016992 #17 ENSGT01060000248589.C ENSGT00530000063582.a #18 ENSGT00950000183055.a.b #21 ENSGT00940000165106 ENSGT01100000263512.a.a.a.a ENSGT00550000075160 ENSGT00510000047733 #22 ENSGT00390000017860.a.a ENSGT00530000063872.A ENSGT00940000158229 ENSGT00940000157209.ib.a ENSGT00390000001134.b ENSGT00950000182994.A ENSGT00390000000141 ENSGT00940000159611 ENSGT00520000059318 ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a ENSGT00940000164237.ab ENSGT00940000164237.`b ENSGT00390000008591 ENSGT00940000159242 Elapidae ANCESTRAL SPECIES 14 ENSGT00530000063484.b.a ENSGT00390000000360 #9 ENSGT00390000006885 #8 ENSGT00390000012647 ENSGT00940000154783 ENSGT00940000160294.j.a ENSGT00940000158744 ENSGT00510000047092 ENSGT00390000016992 #17 ENSGT01060000248589.C ENSGT00530000063582.a #18 ENSGT00950000183055.a.b #21 ENSGT00940000165106 ENSGT01100000263512.a.a.a.a ENSGT00550000075160 ENSGT00510000047733 #22 ENSGT00390000017860.a.a ENSGT00530000063872.A ENSGT00940000158229 ENSGT00940000157209.ib.a ENSGT00390000001134.b ENSGT00950000182994.A.l ENSGT00390000000141 ENSGT00940000159611 ENSGT00520000059318 ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a ENSGT00940000164237.ab ENSGT00390000008591 ENSGT00940000159242 ENSGT00940000161429 Elapidae_a ANCESTRAL SPECIES 30 ENSGT00390000000360 #9 ENSGT00390000006885 #8 ENSGT00390000012647 ENSGT00940000154783 ENSGT00940000160294.j.a ENSGT00940000160294.j.b ENSGT00940000158744 ENSGT00510000047092 ENSGT00390000016992 #17 ENSGT01060000248589.C ENSGT00530000063582.a #18 ENSGT00950000183055.a.b #21 ENSGT00940000165106 ENSGT01100000263512.a.a.a.a ENSGT00550000075160 ENSGT00510000047733 #22 ENSGT00390000017860.a.a ENSGT00530000063872.A ENSGT00940000158229 ENSGT00940000157209.ib.a ENSGT00390000001134.b ENSGT00950000182994.A.l ENSGT00390000000141 ENSGT00940000159611 ENSGT00990000205517 ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a ENSGT00940000164237.`b ENSGT00390000008591 ENSGT00940000159242 ENSGT00940000161429 Acanthophiinae ANCESTRAL SPECIES 20 ENSGT00390000000360 #9 ENSGT00390000006885 #8 ENSGT00390000012647 ENSGT00940000154783 ENSGT00940000160294.j.a ENSGT00940000160294.j.b ENSGT00940000158744 ENSGT00510000047092 ENSGT00390000016992 #17 ENSGT01060000248589.C ENSGT00530000063582.a #18 ENSGT00950000183055.a.b #21 ENSGT00940000165106 ENSGT01100000263512.a.a.a.a ENSGT00550000075160 ENSGT00510000047733 #22 ENSGT00390000017860.a.a ENSGT00940000158229 ENSGT00940000157209.ib.a ENSGT00390000001134.b ENSGT00950000182994.A.l ENSGT00390000000141 ENSGT00940000159611 ENSGT00990000205517 ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a ENSGT00940000164237.`b ENSGT00390000008591 ENSGT00940000159242 ENSGT00940000161429 ENSGT00390000017581.a Eastern brown snake MODERN SPECIES 20 FAAH2 (ENSPTXG00000004585) BRCC3 (ENSPTXG00000004587) #9 CMC4 (ENSPTXG00000004591) ENSPTXG00000004594 #8 FUNDC2 (ENSPTXG00000004596) ENSPTXG00000004604 ENSPTXG00000004605 MPP1 (ENSPTXG00000004606) DKC1 (ENSPTXG00000004607) ENSPTXG00000004612 #17 ENSPTXG00000004614 TMLHE (ENSPTXG00000004616) #18 ENSPTXG00000004620 ENSPTXG00000004623 POLR1D (ENSPTXG00000004628) VAMP7 (ENSPTXG00000004629) #22 ENSPTXG00000004630 NSDHL (ENSPTXG00000004632) ENSPTXG00000004633 DACH2 (ENSPTXG00000004636) ENSPTXG00000004640 POF1B (ENSPTXG00000004728) ZNF711 (ENSPTXG00000004741) ENSPTXG00000004745 APOOL (ENSPTXG00000004749) ENSPTXG00000004751 ENSPTXG00000004753 HDX (ENSPTXG00000004754) RPS6KA6 (ENSPTXG00000004755) ENSPTXG00000004757 ENSPTXG00000004758 Mainland tiger snake MODERN SPECIES 64 CLIC2 (ENSNSUG00000000577) #15 BRCC3 (ENSNSUG00000000576) #9 ENSNSUG00000000575 #8 CMC4 (ENSNSUG00000000570) FUNDC2 (ENSNSUG00000000566) ENSNSUG00000000221 MPP1 (ENSNSUG00000000204) DKC1 (ENSNSUG00000000145) ENSNSUG00000000141 #17 ENSNSUG00000000136 TMLHE (ENSNSUG00000000095) #18 SPRY3 (ENSNSUG00000000072) #21 ENSNSUG00000000065 ENSNSUG00000000043 POLR1D (ENSNSUG00000000015) VAMP7 (ENSNSUG00000020640) #22 NSDHL (ENSNSUG00000020639) ENSNSUG00000020638 ENSNSUG00000020637 POF1B (ENSNSUG00000020636) ZNF711 (ENSNSUG00000020635) ENSNSUG00000020634 ENSNSUG00000020633 ENSNSUG00000020631 HDX (ENSNSUG00000020630) RPS6KA6 (ENSNSUG00000020629) POU3F4 (ENSNSUG00000020628) ENSNSUG00000020627 ENSNSUG00000020626 ENSNSUG00000020625 ENSNSUG00000020624 Blue-lipped sea krait MODERN SPECIES 4250 POLR1D (ENSLLTG00000005010) VAMP7 (ENSLLTG00000005028) #22 ENSLLTG00000003010 ENSLLTG00000003028 Indian cobra MODERN SPECIES 13 FAAH2 (ENSNNAG00000012349) ENSNNAG00000012332 BRCC3 (ENSNNAG00000012319) #9 ENSNNAG00000012311 #8 CMC4 (ENSNNAG00000012270) FUNDC2 (ENSNNAG00000012248) ENSNNAG00000011961 MPP1 (ENSNNAG00000011904) DKC1 (ENSNNAG00000011820) ENSNNAG00000011801 #17 ENSNNAG00000011739 TMLHE (ENSNNAG00000011710) #18 SPRY3 (ENSNNAG00000011696) #21 ENSNNAG00000011207 POLR1D (ENSNNAG00000011122) VAMP7 (ENSNNAG00000011027) #22 ENSNNAG00000010868 NSDHL (ENSNNAG00000010830) ENSNNAG00000010804 DACH2 (ENSNNAG00000010642) ENSNNAG00000010418 POF1B (ENSNNAG00000010293) ZNF711 (ENSNNAG00000010263) ENSNNAG00000010213 ENSNNAG00000010176 APOOL (ENSNNAG00000010158) ENSNNAG00000018865 HDX (ENSNNAG00000018861) RPS6KA6 (ENSNNAG00000018764) ENSNNAG00000018731 ENSNNAG00000018723 Lizard MODERN SPECIES 816 ENSACAG00000029095 ENSACAG00000015165 ENSACAG00000043048 ENSACAG00000015305 ENSACAG00000015346 ENSACAG00000015354 ENSACAG00000015500 ENSACAG00000015502 ENSACAG00000015600 ENSACAG00000015665 #17 ENSACAG00000026028 TMLHE (ENSACAG00000015669) #18 SPRY3 (ENSACAG00000015693) #21 ENSACAG00000015705 ENSACAG00000015753 VAMP7 (ENSACAG00000015766) #22 ENSACAG00000015810 ENSACAG00000015811 ENSACAG00000015812 CETN1 (ENSACAG00000042849) DACH2 (ENSACAG00000013802) ENSACAG00000013859 ZNF711 (ENSACAG00000014034) ENSACAG00000031924 ENSACAG00000014050 APOOL (ENSACAG00000014061) ENSACAG00000042317 ENSACAG00000040757 ENSACAG00000036836 ENSACAG00000014086 HDX (ENSACAG00000014116) Laterata ANCESTRAL SPECIES 31 ENSGT00940000165106 ENSGT01100000263512.a.a.a.a ENSGT00550000075160 ENSGT00510000047733 #22 ENSGT00390000017860.a.a ENSGT00530000063872.A ENSGT00940000158229 ENSGT00940000157209.ib.a ENSGT00390000001134.b ENSGT00950000182994.A ENSGT00390000000141 ENSGT00940000159611 ENSGT00520000059318 ENSGT00950000183121.b.b.b.a ENSGT00530000063666.a ENSGT00940000164237.`b ENSGT00390000008591 ENSGT00940000159242 ENSGT00940000161429 Common wall lizard MODERN SPECIES 419 ENSPMRG00000020472 ENSPMRG00000020461 ENSPMRG00000020449 ENSPMRG00000020442 ENSPMRG00000020440 ENSPMRG00000020435 ENSPMRG00000020432 ENSPMRG00000020431 ENSPMRG00000020427 ENSPMRG00000020425 TMLHE (ENSPMRG00000020417) #18 SPRY3 (ENSPMRG00000020410) #21 ENSPMRG00000020405 ENSPMRG00000020402 ENSPMRG00000020394 VAMP7 (ENSPMRG00000020384) #22 ENSPMRG00000020370 ENSPMRG00000020358 NSDHL (ENSPMRG00000020350) ENSPMRG00000020340 DACH2 (ENSPMRG00000020308) ENSPMRG00000020265 POF1B (ENSPMRG00000020241) ZNF711 (ENSPMRG00000020229) ENSPMRG00000020215 ENSPMRG00000020196 APOOL (ENSPMRG00000020173) ENSPMRG00000020137 HDX (ENSPMRG00000020114) ENSPMRG00000020105 RPS6KA6 (ENSPMRG00000019568) Argentine black and white tegu MODERN SPECIES 75 ENSSMRG00000008378 ENSSMRG00000008379 POLR1D (ENSSMRG00000008381) VAMP7 (ENSSMRG00000008383) #22 ENSSMRG00000008384 ENSSMRG00000008386 NSDHL (ENSSMRG00000008401) ENSSMRG00000008408 DACH2 (ENSSMRG00000008420) ENSSMRG00000008459 POF1B (ENSSMRG00000008469) ZNF711 (ENSSMRG00000008476) ENSSMRG00000008481 APOOL (ENSSMRG00000008484) ENSSMRG00000008499 ENSSMRG00000008508 HDX (ENSSMRG00000008512) RPS6KA6 (ENSSMRG00000008523) POU3F4 (ENSSMRG00000008536) Archelosauria ANCESTRAL SPECIES 37 ENSGT00940000162502 ENSGT00530000063484.b.a ENSGT00390000000360 #9 ENSGT00390000006885 #8 ENSGT00390000012647 ENSGT00940000154783 ENSGT00940000160294 ENSGT00940000158744 ENSGT00510000047092 ENSGT00390000016992 #17 ENSGT00530000063582.a #18 ENSGT00950000183055.a.b #21 ENSGT00940000165106 ENSGT01100000263512.a.a.a.a ENSGT00550000075160 ENSGT00510000047733 #22 ENSGT00390000017860.a.a ENSGT00530000063872.A ENSGT00940000158229 ENSGT00940000157209.ib.a ENSGT00940000157209.ib.b ENSGT00390000003706.a.b.a ENSGT00390000015364.a.b.a ENSGT00390000015364.a.b.b ENSGT00390000015700.b ENSGT00940000153941.a.b ENSGT00940000166719 ENSGT00940000163673 ENSGT00940000164016 ENSGT00940000161062 ENSGT00510000046908.b Cryptodira ANCESTRAL SPECIES 64 ENSGT00940000162502 ENSGT00530000063484.b.a ENSGT00390000000360 #9 ENSGT00390000006885 #8 ENSGT00390000012647 ENSGT00940000154783 ENSGT00940000160294 ENSGT00940000158744 ENSGT00510000047092 ENSGT00390000016992 #17 ENSGT00530000063582.a #18 ENSGT00950000183055.a.b #21 ENSGT00940000165106 ENSGT01100000263512.a.a.a.a ENSGT00550000075160 ENSGT00510000047733 #22 ENSGT00390000017860.a.a ENSGT00940000158229 ENSGT00940000157209.ib.a Testudinoidea ANCESTRAL SPECIES 9 ENSGT00530000063484.b.a ENSGT00390000000360 #9 ENSGT00390000006885 #8 ENSGT00390000012647 ENSGT00940000154783 ENSGT00940000160294.g ENSGT00940000160294.h ENSGT00940000158744 ENSGT00510000047092 ENSGT00390000016992 #17 ENSGT00530000063582.a #18 ENSGT00950000183055.a.b #21 ENSGT00940000165106 ENSGT01100000263512.a.a.a.a ENSGT00550000075160 ENSGT00510000047733 #22 ENSGT00390000017860.a.a ENSGT00940000158229 ENSGT00940000157209.ib.a ENSGT00940000161104 ENSGT01030000235137 ENSGT00940000157773 ENSGT00940000156970 ENSGT00940000158597 ENSGT00940000162100 ENSGT00940000157403 ENSGT00940000156474 ENSGT01030000234527.B ENSGT00940000153241.B ENSGT01050000244976.b.b.b.a.a.b ENSGT00940000162689 Emydidae ANCESTRAL SPECIES 3 ENSGT01100000263512.a.a.a.a ENSGT00550000075160 ENSGT00510000047733 #22 ENSGT00390000017860.a.a ENSGT00940000158229 ENSGT00940000157209.ib.a ENSGT00940000161104 ENSGT01030000235137 ENSGT00940000157773 ENSGT00940000158597 ENSGT00940000162100 ENSGT00940000157403 ENSGT00940000156474 ENSGT01030000234527.B ENSGT00940000153241.B ENSGT01050000244976.b.b.b.a.a.b ENSGT00940000160730.g ENSGT00460000041648 Three-toed box turtle MODERN SPECIES 281 ENSTMTG00000010585 POLR1D (ENSTMTG00000010557) VAMP7 (ENSTMTG00000010533) #22 ENSTMTG00000010497 NSDHL (ENSTMTG00000010471) ENSTMTG00000010457 AIRE (ENSTMTG00000010418) ENSTMTG00000010402 SCLY (ENSTMTG00000010329) KLHL30 (ENSTMTG00000010249) ERFE (ENSTMTG00000010209) ILKAP (ENSTMTG00000010168) KIF1A (ENSTMTG00000009870) ENSTMTG00000009720 AGXT (ENSTMTG00000009668) ENSTMTG00000009604 painted turtle MODERN SPECIES 991 ENSCPBG00000004639 POLR1D (ENSCPBG00000004719) VAMP7 (ENSCPBG00000004732) #22 ENSCPBG00000004759 ENSCPBG00000004829 ENSCPBG00000004946 AIRE (ENSCPBG00000004953) ENSCPBG00000004969 SCLY (ENSCPBG00000004976) Testudinidae ANCESTRAL SPECIES 7 ENSGT00530000063484.b.a ENSGT00390000000360 #9 ENSGT00390000006885 #8 ENSGT00390000012647 ENSGT00940000154783 ENSGT00940000160294.g ENSGT00940000160294.h ENSGT00940000158744 ENSGT00510000047092 ENSGT00390000016992 #17 ENSGT00530000063582.a #18 ENSGT00950000183055.a.b #21 ENSGT00940000165106 ENSGT01100000263512.a.a.a.a ENSGT00550000075160 ENSGT00510000047733 #22 ENSGT00390000017860.a.a ENSGT00940000158229 ENSGT00940000157209.ib.a ENSGT00940000161104 ENSGT01030000235137 ENSGT00940000157773 ENSGT00940000158597 ENSGT00940000162100 ENSGT00940000157403 ENSGT00940000156474 ENSGT00940000153241.B ENSGT01050000244976.b.b.b.a.a.b ENSGT00940000162689 ENSGT00940000160730.g ENSGT00460000041648 Goode s thornscrub tortoise MODERN SPECIES 23 BRCC3 (ENSGEVG00005010091) #9 ENSGEVG00005010057 #8 CMC4 (ENSGEVG00005010035) FUNDC2 (ENSGEVG00005010010) ENSGEVG00005009114 ENSGEVG00005008939 MPP1 (ENSGEVG00005008888) DKC1 (ENSGEVG00005008748) ENSGEVG00005008721 #17 ENSGEVG00005008709 TMLHE (ENSGEVG00005008683) #18 SPRY3 (ENSGEVG00005008669) #21 ENSGEVG00005008655 ENSGEVG00005008627 POLR1D (ENSGEVG00005008613) VAMP7 (ENSGEVG00005008594) #22 ENSGEVG00005008577 NSDHL (ENSGEVG00005008557) ENSGEVG00005008542 AIRE (ENSGEVG00005008497) ENSGEVG00005008480 SCLY (ENSGEVG00005008457) KLHL30 (ENSGEVG00005008418) ERFE (ENSGEVG00005008392) ILKAP (ENSGEVG00005008357) KIF1A (ENSGEVG00005005726) AGXT (ENSGEVG00005005094) MAB21L4 (ENSGEVG00005005052) ENSGEVG00005004992 ENSGEVG00005004974 SNED1 (ENSGEVG00005004926) Abingdon island giant tortoise MODERN SPECIES 1816 NAV2 (ENSCABG00000015081) DBX1 (ENSCABG00000015109) HTATIP2 (ENSCABG00000015111) PRMT3 (ENSCABG00000015114) SLC6A5 (ENSCABG00000015405) NELL1 (ENSCABG00000015425) ENSCABG00000000075 POLR1D (ENSCABG00000000127) VAMP7 (ENSCABG00000000260) #22 ENSCABG00000000272 ENSCABG00000000288 Chinese turtle MODERN SPECIES 152 FAAH2 (ENSPSIG00000005227) ENSPSIG00000005176 #8 CMC4 (ENSPSIG00000005138) FUNDC2 (ENSPSIG00000004918) F8 (ENSPSIG00000016737) MPP1 (ENSPSIG00000014074) DKC1 (ENSPSIG00000013765) ENSPSIG00000013696 TMLHE (ENSPSIG00000013371) #18 SPRY3 (ENSPSIG00000000964) #21 BRCC3 (ENSPSIG00000013233) #9 ENSPSIG00000012947 ENSPSIG00000011921 POLR1D (ENSPSIG00000011822) ENSPSIG00000000960 VAMP7 (ENSPSIG00000011813) #22 ENSPSIG00000011350 NSDHL (ENSPSIG00000010828) ENSPSIG00000010782 Archosauria ANCESTRAL SPECIES 15 ENSGT00530000063582.a #18 ENSGT00950000183055.a.b #21 ENSGT00940000165106 ENSGT01100000263512.a.a.a.a ENSGT00550000075160 ENSGT00510000047733 #22 ENSGT00390000017860.a.a ENSGT00530000063872.A ENSGT00940000158229 ENSGT00940000157209.ib.a ENSGT00940000157209.ib.b ENSGT00390000003706.a.b.a ENSGT00390000015364.a.b.a ENSGT00390000015364.a.b.b ENSGT00390000015700.b ENSGT00940000153941.a.b ENSGT00940000166719 ENSGT00940000163673 ENSGT00940000164016 ENSGT00940000161062 ENSGT00510000046908.b Australian saltwater crocodile MODERN SPECIES 43 ENSCPRG00005006996 ENSCPRG00005007011 CNGA2 (ENSCPRG00005007016) ENSCPRG00005007026 PRRG3 (ENSCPRG00005007028) MORC4 (ENSCPRG00005007034) CLDN2 (ENSCPRG00005007070) ENSCPRG00005007078 RBM41 (ENSCPRG00005007080) NUP62 (ENSCPRG00005007086) DNAAF6 (ENSCPRG00005007091) SPRY3 (ENSCPRG00005007095) #21 ENSCPRG00005007102 ENSCPRG00005007110 POLR1D (ENSCPRG00005007123) VAMP7 (ENSCPRG00005007124) #22 ENSCPRG00005007130 ENSCPRG00005007140 NSDHL (ENSCPRG00005007145) ENSCPRG00005007149 ENSCPRG00005007153 ENSCPRG00005007161 ENSCPRG00005007169 GLOD5 (ENSCPRG00005007176) ENSCPRG00005007179 ENSCPRG00005007192 ENSCPRG00005007197 KLF8 (ENSCPRG00005007207) ENSCPRG00005007212 ENSCPRG00005007228 ENSCPRG00005007232 Aves ANCESTRAL SPECIES 23 ENSGT00530000063582.a #18 ENSGT00950000183055.a.b #21 ENSGT00940000165106 ENSGT01100000263512.a.a.a.a ENSGT00550000075160 ENSGT00510000047733 #22 ENSGT00390000017860.a.a ENSGT00530000063872.A ENSGT00940000158229 ENSGT00940000157209.ib.a ENSGT00940000157209.ib.b ENSGT00390000003706.a.b.a ENSGT00390000015364.a.b.a ENSGT00390000015364.a.b.b ENSGT00390000015700.b ENSGT00940000153941.a.b ENSGT00940000166719 ENSGT00940000163673 ENSGT00940000164016 ENSGT00940000161062 ENSGT00950000183031.B African ostrich MODERN SPECIES 113 ENSSCUG00000000470 ENSSCUG00000000473 ENSSCUG00000000480 ENSSCUG00000000490 TMLHE (ENSSCUG00000000492) #18 SPRY3 (ENSSCUG00000000494) #21 ENSSCUG00000000496 ENSSCUG00000000499 POLR1D (ENSSCUG00000000502) VAMP7 (ENSSCUG00000000504) #22 ENSSCUG00000000508 ENSSCUG00000000513 NSDHL (ENSSCUG00000000520) ENSSCUG00000000521 ENSSCUG00000000522 ENSSCUG00000000524 ENSSCUG00000000525 ENSSCUG00000000526 GLOD5 (ENSSCUG00000000528) ENSSCUG00000000531 ENSSCUG00000000547 ENSSCUG00000000556 KLF8 (ENSSCUG00000000559) ENSSCUG00000000563 Neognathae ANCESTRAL SPECIES 22 ENSGT00940000173950 ENSGT00530000063582.a #18 ENSGT00950000183055.a.b #21 ENSGT00940000165106 ENSGT01100000263512.a.a.a.a ENSGT00550000075160 ENSGT00510000047733 #22 ENSGT00390000017860.a.a ENSGT00530000063872.A ENSGT00940000158229 ENSGT00940000157209.ib.a ENSGT00940000157209.ib.b ENSGT00390000003706.a.b.a ENSGT00390000015364.a.b.a ENSGT00390000015364.a.b.b ENSGT00390000015700.b ENSGT00940000153941.a.b ENSGT00940000166719 ENSGT00940000163673 ENSGT00940000164016 ENSGT00940000161062 ENSGT00950000183031.B Galloanserae ANCESTRAL SPECIES 21 ENSGT00940000173950 ENSGT00530000063582.a #18 ENSGT00950000183055.a.b #21 ENSGT00940000165106 ENSGT01100000263512.a.a.a.a ENSGT00550000075160 ENSGT00510000047733 #22 ENSGT00390000017860.a.a ENSGT00530000063872.A ENSGT00940000158229 ENSGT00940000157209.ib.a ENSGT00940000157209.ib.b ENSGT00390000003706.a.b.a ENSGT00390000015364.a.b.a ENSGT00390000015364.a.b.b ENSGT00390000015700.b ENSGT00940000153941.a.b ENSGT00940000166719 ENSGT00940000163673 ENSGT00940000164016 ENSGT00940000161062 ENSGT00950000183031.B Phasianidae ANCESTRAL SPECIES 2 ENSGT00940000162359 ENSGT00940000164188 ENSGT00940000159444 ENSGT00940000161201 ENSGT00940000155374 ENSGT00960000189674 ENSGT00940000160946 ENSGT00940000161952 ENSGT00940000160785 ENSGT00940000173950 ENSGT00530000063582.a #18 ENSGT00950000183055.a.b #21 ENSGT00940000165106 ENSGT01100000263512.a.a.a.a ENSGT00550000075160 ENSGT00510000047733 #22 ENSGT00390000017860.a.a ENSGT00530000063872.A ENSGT00940000158229 ENSGT00940000157209.ib.a ENSGT00940000157209.ib.b ENSGT00390000003706.a.b.a ENSGT00390000015364.a.b.a ENSGT00390000015364.a.b.b ENSGT00390000015700.b ENSGT00940000153941.a.b ENSGT00940000166719 ENSGT00940000163673.l ENSGT00940000164016 ENSGT00940000161062 ENSGT00950000183031.B Japanese quail MODERN SPECIES 22 SOX3 (ENSCJPG00005016837) ENSCJPG00005016866 GABRA3 (ENSCJPG00005016868) GABRE (ENSCJPG00005016871) CNGA2 (ENSCJPG00005016882) ENSCJPG00005016883 PRRG3 (ENSCJPG00005016884) ENSCJPG00005016885 CLDN2 (ENSCJPG00005016886) ENSCJPG00005016888 TMLHE (ENSCJPG00005016890) #18 SPRY3 (ENSCJPG00005016891) #21 ENSCJPG00005016893 EDNRB2 (ENSCJPG00005016895) POLR1D (ENSCJPG00005016896) VAMP7 (ENSCJPG00005016911) #22 ENSCJPG00005016912 NSDHL (ENSCJPG00005016914) ENSCJPG00005016915 ENSCJPG00005016916 ENSCJPG00005016917 ENSCJPG00005016918 ENSCJPG00005016919 ENSCJPG00005016920 GLOD5 (ENSCJPG00005016921) ENSCJPG00005016922 ENSCJPG00005016924 ENSCJPG00005016925 ENSCJPG00005016926 KLF8 (ENSCJPG00005016928) ENSCJPG00005016929 Phasianidae_b ANCESTRAL SPECIES 27 ENSGT00940000173950 ENSGT00530000063582.a #18 ENSGT00950000183055.a.b #21 ENSGT00940000165106 ENSGT01100000263512.a.a.a.a ENSGT00550000075160 ENSGT00510000047733 #22 ENSGT00390000017860.a.a ENSGT00530000063872.A ENSGT00940000158229 ENSGT00940000157209.ib.a ENSGT00940000157209.ib.b ENSGT00390000003706.a.b.a ENSGT00390000015364.a.b.a ENSGT00390000015364.a.b.b ENSGT00390000015700.b ENSGT00940000153941.a.b ENSGT00940000166719 ENSGT00940000163673.l ENSGT00940000164016 ENSGT00940000161062 ENSGT00950000183031.B Chicken MODERN SPECIES 33 SLITRK4 (ENSGALG00010019325) GABRQ (ENSGALG00010015078) GABRA3 (ENSGALG00010015087) GABRE (ENSGALG00010015096) CNGA2 (ENSGALG00010015104) CLDN2 (ENSGALG00010015115) PRRG3 (ENSGALG00010015129) RIPPLY1 (ENSGALG00010015135) ENSGALG00010015149 ENSGALG00010015169 TMLHE (ENSGALG00010015194) #18 SPRY3 (ENSGALG00010011723) #21 POU4F1L (ENSGALG00010011358) EDNRB2 (ENSGALG00010012311) POLR1D (ENSGALG00010012318) VAMP7 (ENSGALG00010012404) #22 ENSGALG00010012456 ENSGALG00010012673 NSDHL (ENSGALG00010012857) CETN1 (ENSGALG00010012469) ENSGALG00010012874 GATD3AL2 (ENSGALG00010011734) ENSGALG00010011648 ENSGALG00010012128 ENSGALG00010012137 GLOD5 (ENSGALG00010012140) ENSGALG00010012145 KCTD12 (ENSGALG00010011333) ENSGALG00010011823 KLF8 (ENSGALG00010011866) RRAGA (ENSGALG00010011898) Turkey MODERN SPECIES 29 ENSMGAG00000004934 ENSMGAG00000005027 ENSMGAG00000015814 ENSMGAG00000018856 ENSMGAG00000005045 GABRA3 (ENSMGAG00000005137) GABRE (ENSMGAG00000005194) CNGA2 (ENSMGAG00000005170) PRRG3 (ENSMGAG00000005238) ENSMGAG00000005246 ENSMGAG00000017674 TMLHE (ENSMGAG00000005254) #18 ENSMGAG00000015816 #21 ENSMGAG00000005304 ENSMGAG00000005322 VAMP7 (ENSMGAG00000005326) #22 ENSMGAG00000005395 ENSMGAG00000018578 ENSMGAG00000005409 ENSMGAG00000005430 ENSMGAG00000019495 ENSMGAG00000005457 ENSMGAG00000005478 ENSMGAG00000005495 ENSMGAG00000005500 ENSMGAG00000005503 ENSMGAG00000005553 ENSMGAG00000005569 ENSMGAG00000020275 ENSMGAG00000005575 ENSMGAG00000005616 Anatidae ANCESTRAL SPECIES 35 ENSGT00940000173950 ENSGT00530000063582.a #18 ENSGT00950000183055.a.b #21 ENSGT00940000165106 ENSGT01100000263512.a.a.a.a ENSGT00550000075160 ENSGT00510000047733 #22 ENSGT00390000017860.a.a ENSGT00530000063872.A ENSGT00940000158229 ENSGT00940000157209.ib.a ENSGT00940000157209.ib.b ENSGT00390000003706.a.b.a ENSGT00390000015364.a.b.a ENSGT00390000015364.a.b.b ENSGT00390000015700.b ENSGT00940000153941.a.b ENSGT00940000166719 ENSGT00940000163673 ENSGT00940000164016 ENSGT00950000183031.B ENSGT00390000008508 Duck MODERN SPECIES 1 ENSAPLG00000000577 MTM1 (ENSAPLG00000002352) MAMLD1 (ENSAPLG00000003254) ENSAPLG00000003441 TMEM185A (ENSAPLG00000003446) IDS (ENSAPLG00000003521) AFF2 (ENSAPLG00000003660) FMR1 (ENSAPLG00000003811) SLITRK2 (ENSAPLG00000001736) ENSAPLG00000016900 TMLHE (ENSAPLG00000012485) #18 SPRY3 (ENSAPLG00000012493) #21 ENSAPLG00000020012 ENSAPLG00000012679 POLR1D (ENSAPLG00000012757) VAMP7 (ENSAPLG00000012771) #22 ENSAPLG00000012884 ENSAPLG00000012906 NSDHL (ENSAPLG00000013097) ENSAPLG00000023224 ENSAPLG00000013441 ENSAPLG00000013521 ENSAPLG00000013596 ENSAPLG00000021197 GLOD5 (ENSAPLG00000020648) ENSAPLG00000013758 ENSAPLG00000001241 ENSAPLG00000019319 C8orf48 (ENSAPLG00000020502) MTMR8 (ENSAPLG00000003847) ASB12 (ENSAPLG00000025193) Pink-footed goose MODERN SPECIES 96 TMLHE (ENSABRG00000019206) #18 SPRY3 (ENSABRG00000019199) #21 ENSABRG00000019190 ENSABRG00000019183 POLR1D (ENSABRG00000019178) VAMP7 (ENSABRG00000019175) #22 ENSABRG00000019173 NSDHL (ENSABRG00000019160) ENSABRG00000019155 ENSABRG00000019147 ENSABRG00000019144 ENSABRG00000019142 ENSABRG00000019141 ENSABRG00000019139 GLOD5 (ENSABRG00000019136) ENSABRG00000019128 ENSABRG00000019124 ENSABRG00000019119 ENSABRG00000019112 ENSABRG00000019105 ENSABRG00000019079 Neognathae_b ANCESTRAL SPECIES ENSGT00550000075136 ENSGT00940000160863 ENSGT00890000139472 ENSGT00940000159471 ENSGT01060000248564.b.b ENSGT00390000006788.a.a ENSGT00940000153904.b ENSGT00940000153763.a ENSGT01040000244068 ENSGT00940000173950 ENSGT00530000063582.a #18 ENSGT00950000183055.a.b #21 ENSGT00940000165106 ENSGT01100000263512.a.a.a.a ENSGT00550000075160 ENSGT00510000047733 #22 ENSGT00390000017860.a.a ENSGT00530000063872.A ENSGT00940000158229 ENSGT00940000157209.ib.a ENSGT00940000157209.ib.b ENSGT00390000003706.a.b.a ENSGT00390000015364.a.b.a ENSGT00390000015364.a.b.b ENSGT00390000015700.b ENSGT00940000153941.a.b ENSGT00940000166719 ENSGT00940000163673 ENSGT00940000164016 ENSGT00940000161062 ENSGT00950000183031.B Passeriformes ANCESTRAL SPECIES 30 ENSGT00550000075136 ENSGT00940000160863 ENSGT00890000139472 ENSGT00940000159471 ENSGT01060000248564.b.b ENSGT00390000006788.a.a ENSGT00940000153904.b ENSGT00940000153763.a ENSGT01040000244068 ENSGT00940000173950 ENSGT00530000063582.a #18 ENSGT00950000183055.a.b #21 ENSGT00940000165106 ENSGT01100000263512.a.a.a.a ENSGT00550000075160 ENSGT00510000047733 #22 ENSGT00390000017860.a.a ENSGT00530000063872.A ENSGT00940000158229 ENSGT00940000157209.ib.a ENSGT00390000003706.a.b.a ENSGT00390000015364.a.b.a ENSGT00390000015364.a.b.b ENSGT00390000015700.b ENSGT00940000153941.a.b ENSGT00940000166719 ENSGT00940000163673 ENSGT00940000164016 ENSGT00940000161062 ENSGT00950000183031.B ENSGT00940000166620 Passeriformes_d ANCESTRAL SPECIES 31 ENSGT00940000156455 ENSGT00550000075136 ENSGT00940000160863 ENSGT00890000139472 ENSGT00940000159471 ENSGT01060000248564.b.b ENSGT00390000006788.a.a ENSGT00940000153904.b ENSGT00940000153763.a ENSGT01040000244068 ENSGT00530000063582.a #18 ENSGT00950000183055.a.b #21 ENSGT00940000165106 ENSGT01100000263512.a.a.a.a ENSGT00550000075160 ENSGT00510000047733 #22 ENSGT00390000017860.a.a ENSGT00530000063872.A ENSGT00940000158229 ENSGT00940000157209.ib.a ENSGT00390000003706.a.b.a ENSGT00390000015364.a.b.a ENSGT00390000015364.a.b.b ENSGT00390000015700.b ENSGT00940000153941.a.b ENSGT00940000166719 ENSGT00940000163673 ENSGT00940000164016 ENSGT00940000161062 ENSGT00950000183031.B ENSGT00940000166620 Flycatcher MODERN SPECIES 23 ENSFALG00000011551 ENSFALG00000011540 ENSFALG00000011529 ENSFALG00000023854 ENSFALG00000025048 ENSFALG00000011510 ENSFALG00000011502 ENSFALG00000027251 ENSFALG00000025631 ENSFALG00000011498 TMLHE (ENSFALG00000011491) #18 ENSFALG00000023744 SPRY3 (ENSFALG00000028293) #21 ENSFALG00000011470 ENSFALG00000011463 VAMP7 (ENSFALG00000011445) #22 ENSFALG00000011433 ENSFALG00000024895 ENSFALG00000011386 ENSFALG00000023638 ENSFALG00000011351 ENSFALG00000011343 ENSFALG00000011333 ENSFALG00000024517 ENSFALG00000011323 ENSFALG00000011318 ENSFALG00000026980 ENSFALG00000011293 ENSFALG00000014669 ENSFALG00000023898 KLF8 (ENSFALG00000023552) Passeriformes_g ANCESTRAL SPECIES 23 ENSGT00940000156455 ENSGT00550000075136 ENSGT00940000160863 ENSGT00890000139472 ENSGT00940000159471 ENSGT01060000248564.b.b ENSGT00390000006788.a.a ENSGT00940000153904.b ENSGT00940000153763.a ENSGT01040000244068 ENSGT00530000063582.a #18 ENSGT00950000183055.a.b #21 ENSGT00940000165106 ENSGT01100000263512.a.a.a.a ENSGT00550000075160 ENSGT00510000047733 #22 ENSGT00390000017860.a.a ENSGT00530000063872.A ENSGT00940000158229 ENSGT00940000157209.ib.a ENSGT00390000003706.a.b.a ENSGT00390000015364.a.b.a ENSGT00390000015364.a.b.b ENSGT00390000015700.b ENSGT00940000153941.a.b ENSGT00940000166719 ENSGT00940000163673 ENSGT00940000164016 ENSGT00940000161062 ENSGT00950000183031.B ENSGT00940000166620 Passeroidea ANCESTRAL SPECIES 25 ENSGT00940000156455 ENSGT00550000075136 ENSGT00940000160863 ENSGT00890000139472 ENSGT00940000159471 ENSGT01060000248564.b.b ENSGT00390000006788.a.a ENSGT00940000153904.b ENSGT00940000153763.a ENSGT01070000253816.a.a.a ENSGT00530000063582.a #18 ENSGT00950000183055.a.b #21 ENSGT00940000165106 ENSGT01100000263512.a.a.a.a ENSGT00550000075160 ENSGT00510000047733 #22 ENSGT00390000017860.a.a ENSGT00530000063872.A ENSGT00940000158229 ENSGT00940000157209.ib.a ENSGT00390000003706.a.b.a ENSGT00390000015364.a.b.a ENSGT00390000015364.a.b.b ENSGT00390000015700.b ENSGT00940000153941.a.b ENSGT00940000166719 ENSGT00940000163673 ENSGT00940000164016 ENSGT00940000161062 ENSGT00950000183031.B ENSGT00940000166620 Zebra finch DUPLICATION Zebra finch MODERN SPECIES 26 RAB33A (ENSTGUG00000005228) ENSTGUG00000005239 SLC25A14 (ENSTGUG00000005241) GPR119 (ENSTGUG00000018290) ENOX2 (ENSTGUG00000005267) ENSTGUG00000005313 ENSTGUG00000004980 ENSTGUG00000020814 ENSTGUG00000021485 ENSTGUG00000005395 ENSTGUG00000028678 #18 ENSTGUG00000018792 #21 ENSTGUG00000023728 ENSTGUG00000005425 ENSTGUG00000005450 ENSTGUG00000024179 #22 ENSTGUG00000005475 ENSTGUG00000005324 ENSTGUG00000027391 ENSTGUG00000022125 ENSTGUG00000005397 #18 ENSTGUG00000025775 ENSTGUG00000022056 ENSTGUG00000028795 ENSTGUG00000005462 #22 ENSTGUG00000027021 ENSTGUG00000023341 ENSTGUG00000023560 NSDHL (ENSTGUG00000005479) CETN2 (ENSTGUG00000005489) ENSTGUG00000005498 Zebra finch MODERN SPECIES 26 ENSTGUG00000005395 ENSTGUG00000028678 #18 ENSTGUG00000018792 #21 ENSTGUG00000023728 ENSTGUG00000005425 ENSTGUG00000005450 ENSTGUG00000024179 #22 ENSTGUG00000005475 ENSTGUG00000005324 ENSTGUG00000027391 ENSTGUG00000022125 ENSTGUG00000005397 #18 ENSTGUG00000025775 ENSTGUG00000022056 ENSTGUG00000028795 ENSTGUG00000005462 #22 ENSTGUG00000027021 ENSTGUG00000023341 ENSTGUG00000023560 NSDHL (ENSTGUG00000005479) CETN2 (ENSTGUG00000005489) ENSTGUG00000005498 ENSTGUG00000005499 ENSTGUG00000027705 ENSTGUG00000005503 GLOD5 (ENSTGUG00000005508) ENSTGUG00000005511 ENSTGUG00000005525 ENSTGUG00000005530 KLF8 (ENSTGUG00000021187) ENSTGUG00000005543 Common canary MODERN SPECIES 13 RAB33A (ENSSCAG00000015985) RBMX2 (ENSSCAG00000015986) SLC25A14 (ENSSCAG00000015989) GPR119 (ENSSCAG00000015993) ENOX2 (ENSSCAG00000015997) ENSSCAG00000016003 ENSSCAG00000016007 CLCN5 (ENSSCAG00000016022) ENSSCAG00000016035 ENSSCAG00000016042 TMLHE (ENSSCAG00000016044) #18 SPRY3 (ENSSCAG00000016048) #21 ENSSCAG00000016053 ENSSCAG00000016058 POLR1D (ENSSCAG00000016071) VAMP7 (ENSSCAG00000016074) #22 ENSSCAG00000016077 ENSSCAG00000016092 NSDHL (ENSSCAG00000016117) CETN1 (ENSSCAG00000016121) ENSSCAG00000016123 ENSSCAG00000016128 ENSSCAG00000016133 GLOD5 (ENSSCAG00000016135) ENSSCAG00000016139 ENSSCAG00000016148 ENSSCAG00000016151 ENSSCAG00000016154 ENSSCAG00000016159 ENSSCAG00000016164 MTMR8 (ENSSCAG00000016167) Medium ground finch MODERN SPECIES 207 ZDHHC9 (ENSGFOG00000009657) ENSGFOG00000009242 BCORL1 (ENSGFOG00000009217) AIFM1 (ENSGFOG00000007687) RAB33A (ENSGFOG00000007600) RBMX2 (ENSGFOG00000007595) SLC25A14 (ENSGFOG00000007592) GPR119 (ENSGFOG00000009498) ENOX2 (ENSGFOG00000009485) ENSGFOG00000009473 CLCN5 (ENSGFOG00000009459) ENSGFOG00000009449 TMLHE (ENSGFOG00000009436) #18 ENSGFOG00000009427 POLR1D (ENSGFOG00000009425) VAMP7 (ENSGFOG00000009418) #22 ENSGFOG00000009410 NSDHL (ENSGFOG00000009399) CETN1 (ENSGFOG00000009390) ENSGFOG00000009380 ENSGFOG00000009363 ENSGFOG00000009351 GLOD5 (ENSGFOG00000009263) ENSGFOG00000009252 ENSGFOG00000009229 Great tit MODERN SPECIES 24 CDX4 (ENSPMJG00000012219) ENSPMJG00000012220 ENSPMJG00000012221 ARHGEF9 (ENSPMJG00000012224) AMER1 (ENSPMJG00000012226) ASB12 (ENSPMJG00000012227) MTMR8 (ENSPMJG00000012233) ENSPMJG00000012265 ENSPMJG00000012266 ENSPMJG00000012268 KLF8 (ENSPMJG00000012269) ENSPMJG00000012271 ENSPMJG00000012273 ENSPMJG00000012274 POLR1D (ENSPMJG00000012275) VAMP7 (ENSPMJG00000012276) #22 ENSPMJG00000012277 ENSPMJG00000012278 NSDHL (ENSPMJG00000012281) CETN1 (ENSPMJG00000012282) ENSPMJG00000012283 ENSPMJG00000012284 ENSPMJG00000012285 ENSPMJG00000012287 GLOD5 (ENSPMJG00000012288) ENSPMJG00000012294 ENSPMJG00000012295 ENSPMJG00000012296 ENSPMJG00000012297 HDAC8 (ENSPMJG00000012298) PHKA1 (ENSPMJG00000012303) Neognathae_c ANCESTRAL SPECIES 4 ENSGT00550000075136 ENSGT00940000160863 ENSGT00890000139472 ENSGT00940000159471 ENSGT01060000248564.b.b ENSGT00390000006788.a.a ENSGT00940000153904.b ENSGT00940000153763.a ENSGT01070000253816.a.a.a ENSGT00940000173950 ENSGT00530000063582.a #18 ENSGT00950000183055.a.b #21 ENSGT00940000165106 ENSGT01100000263512.a.a.a.a ENSGT00550000075160 ENSGT00510000047733 #22 ENSGT00390000017860.a.a ENSGT00940000158229 ENSGT00940000157209.ib.a ENSGT00940000157209.ib.b ENSGT00390000003706.a.b.a ENSGT00390000015364.a.b.a ENSGT00390000015700.b ENSGT00940000153941.a.b ENSGT00940000166719 ENSGT00940000163673 ENSGT00940000164016 ENSGT00940000161062 ENSGT00950000183031.B ENSGT00940000166620 ENSGT00940000162717 Golden eagle MODERN SPECIES 13 RBMX2 (ENSACCG00020007743) SLC25A14 (ENSACCG00020007727) GPR119 (ENSACCG00020007718) ENOX2 (ENSACCG00020007695) ENSACCG00020007661 ENSACCG00020007639 CLCN5 (ENSACCG00020007611) ENSACCG00020007589 ENSACCG00020007570 ENSACCG00020007555 TMLHE (ENSACCG00020007536) #18 SPRY3 (ENSACCG00020007532) #21 ENSACCG00020007522 ENSACCG00020007508 POLR1D (ENSACCG00020007496) VAMP7 (ENSACCG00020007483) #22 ENSACCG00020007462 NSDHL (ENSACCG00020007445) ENSACCG00020007427 ENSACCG00020007416 ENSACCG00020007403 ENSACCG00020007384 ENSACCG00020007368 ENSACCG00020007333 KLF8 (ENSACCG00020007297) ENSACCG00020007279 ENSACCG00020007253 ENSACCG00020007240 MTMR8 (ENSACCG00020007219) ASB12 (ENSACCG00020007207) AMER1 (ENSACCG00020007175) Kakapo MODERN SPECIES 1 AIFM1 (ENSSHBG00005015724) MARS2 (ENSSHBG00005015746) RAB33A (ENSSHBG00005015752) RBMX2 (ENSSHBG00005015755) SLC25A14 (ENSSHBG00005015761) ENOX2 (ENSSHBG00005015764) ENSSHBG00005015772 ENSSHBG00005015782 CLCN5 (ENSSHBG00005015794) ENSSHBG00005015799 TMLHE (ENSSHBG00005000612) #18 SPRY3 (ENSSHBG00005000614) #21 ENSSHBG00005000616 ENSSHBG00005000617 ENSSHBG00005000618 VAMP7 (ENSSHBG00005006450) #22 ENSSHBG00005006484 NSDHL (ENSSHBG00005006505) CETN1 (ENSSHBG00005006526) ENSSHBG00005006536 ENSSHBG00005006551 ENSSHBG00005006567 GLOD5 (ENSSHBG00005006584) ENSSHBG00005006622 ENSSHBG00005006804 ENSSHBG00005006819 KLF8 (ENSSHBG00005006843) ENSSHBG00005006862 ENSSHBG00005006890 ENSSHBG00005006915 MTMR8 (ENSSHBG00005006939)