Eutheria ANCESTRAL SPECIES 16 ENSGT00940000158744 ENSGT00390000005685 ENSGT00390000016992 #17 ENSGT00940000160294 ENSGT00940000154783 #8 ENSGT00390000012647 #9 ENSGT00390000006885.a #10 ENSGT00390000000360 #11 ENSGT00950000183068.a.a ENSGT00390000018904 #12 ENSGT00940000158132 #13 ENSGT00940000161397 #14 ENSGT00940000163020 #18 ENSGT00530000063582.a #20 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 ENSGT00530000063872.A ENSGT00940000158229 ENSGT00940000155935 ENSGT00940000162167 ENSGT00940000164188 ENSGT00940000159444 ENSGT00940000154972 ENSGT00940000161201 ENSGT00940000155374 ENSGT00390000006832 ENSGT00940000160946 ENSGT00390000017980 ENSGT00940000160515 ENSGT00940000153299.d ENSGT00940000154344.a Boreoeutheria ANCESTRAL SPECIES 11 ENSGT00940000160294 ENSGT00940000154783.e.b #8 ENSGT00940000163020 #18 ENSGT00390000016992 #17 ENSGT00940000154783.f ##8 ENSGT00390000012647 #9 ENSGT00390000006885.a #10 ENSGT00390000000360.r ##11 ENSGT00950000183068.a.a ENSGT00390000018904 #12 ENSGT00910000148519 ENSGT00940000158132 #13 ENSGT00940000161397 #14 ENSGT00530000063582.a #20 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 Euarchontoglires ANCESTRAL SPECIES 11 ENSGT00940000160294 ENSGT00940000154783.e.b #8 ENSGT00940000163020 #18 ENSGT00390000016992 #17 ENSGT00940000154783.f ##8 ENSGT00390000012647 #9 ENSGT00390000006885.a #10 ENSGT00390000000360.r.b ##11 ENSGT00950000183068.a.a ENSGT00390000018904 #12 ENSGT00910000148519 ENSGT00940000158132 #13 ENSGT00940000161397 #14 ENSGT00530000063582.a #20 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 Primates ANCESTRAL SPECIES 23 ENSGT00940000154783.e.b #8 ENSGT00940000163020 #18 ENSGT00390000016992 #17 ENSGT00940000154783.f ##8 ENSGT00390000012647 #9 ENSGT00390000006885.a #10 ENSGT00390000000360.q.a #11 ENSGT00390000000360.r.a.b ##11 ENSGT00950000183068.a.a ENSGT00390000018904 #12 ENSGT00910000148519 ENSGT00940000158132 #13 ENSGT00940000161397 #14 ENSGT00530000063582.a #20 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 Haplorrhini ANCESTRAL SPECIES 33 ENSGT00950000182808.b.b ENSGT00950000183004.a.a.a.b ENSGT00530000063435.a ENSGT00530000063808.a ENSGT00410000025802.h ENSGT00940000159803 ENSGT00510000047092 ENSGT00940000158744 ENSGT00390000005685 ENSGT00940000160294 ENSGT00940000154783.f ##8 ENSGT00940000163020 #18 ENSGT00390000016992 #17 ENSGT00530000063582.a #20 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 ENSGT00940000154783.e.b #8 ENSGT00390000012647 #9 ENSGT00390000006885.a #10 ENSGT00390000000360.q.a #11 ENSGT00950000183068.a.a ENSGT00390000018904 #12 ENSGT00910000148519 ENSGT00940000158132 #13 ENSGT00940000161397 #14 Simiiformes ANCESTRAL SPECIES 9 ENSGT00390000005685 ENSGT00940000160294 ENSGT00940000163020 #18 ENSGT00940000154783.e.b #8 ENSGT00390000012647 #9 ENSGT00390000006885.a #10 ENSGT00390000000360.q.a #11 ENSGT00950000183068.a.a ENSGT00390000018904 #12 ENSGT00910000148519 ENSGT00940000158132 #13 ENSGT00940000161397 #14 ENSGT00390000016992 #17 ENSGT00530000063582.a #20 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 ENSGT00550000075071 ENSGT00510000049125 #23 Catarrhini ANCESTRAL SPECIES 12 ENSGT00390000005685 ENSGT00940000160294 ENSGT00940000163020 #18 ENSGT00390000016992 #17 ENSGT00940000154783.e.b #8 ENSGT00390000012647 #9 ENSGT00390000006885.a #10 ENSGT00390000000360.q.a #11 ENSGT00950000183068.a.a ENSGT00390000018904 #12 ENSGT00910000148519 ENSGT00940000158132 #13 ENSGT00940000161397 #14 ENSGT00530000063582.a #20 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 ENSGT00550000075071 ENSGT00510000049125 #23 Hominoidea ANCESTRAL SPECIES 29 ENSGT00510000047092 ENSGT00940000158744 ENSGT00390000005685 ENSGT00940000160294 ENSGT00940000154783.e.b #8 ENSGT00390000012647 #9 ENSGT00390000006885.a #10 ENSGT00390000000360.q.a #11 ENSGT00390000018904 #12 ENSGT00940000158132 #13 ENSGT00940000161397 #14 ENSGT00940000163020 #18 ENSGT00390000016992 #17 ENSGT00530000063582.a #20 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 ENSGT00510000049125 #23 Hominidae ANCESTRAL SPECIES 8 ENSGT00510000047092 ENSGT00940000158744 ENSGT00390000005685 ENSGT00940000160294 ENSGT00940000154783.e.b #8 ENSGT00390000012647 #9 ENSGT00390000006885.a #10 ENSGT00390000000360.q.a #11 ENSGT00390000018904 #12 ENSGT00940000158132 #13 ENSGT00940000161397 #14 ENSGT00940000163020 #18 ENSGT00390000016992 #17 ENSGT00530000063582.a #20 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 ENSGT00510000049125.d.a.a #23 Orangutan MODERN SPECIES 242 ENSPPYG00000038630 #7 FUNDC2 (ENSPPYG00000020897) #8 CMC4 (ENSPPYG00000020898) #9 MTCP1 (ENSPPYG00000035172) #10 BRCC3 (ENSPPYG00000020899) #11 VBP1 (ENSPPYG00000020900) #12 RAB39B (ENSPPYG00000032989) #13 CLIC2 (ENSPPYG00000020902) #14 ENSPPYG00000037853 #15 ENSPPYG00000038438 #16 ENSPPYG00000032431 #17 ENSPPYG00000030924 #18 ENSPPYG00000033468 #19 TMLHE (ENSPPYG00000020904) #20 SPRY3 (ENSPPYG00000020905) #21 VAMP7 (ENSPPYG00000020906) #22 ENSPPYG00000020907 #23 Homo/Pan/Gorilla group ANCESTRAL SPECIES 9 ENSGT00510000047092 ENSGT00940000158744 ENSGT00390000005685 ENSGT00940000160294 ENSGT00940000163020 #18 ENSGT00390000016992 #17 ENSGT00940000154783.e.b #8 ENSGT00390000012647 #9 ENSGT00390000006885.a #10 ENSGT00390000000360.q.a #11 ENSGT00390000018904 #12 ENSGT00940000158132 #13 ENSGT00940000161397 #14 ENSGT00530000063582.a #20 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 ENSGT00510000049125.d.a.a #23 Gorilla MODERN SPECIES 523 DKC1 (ENSGGOG00000001045) MPP1 (ENSGGOG00000001049) ENSGGOG00000025061 SMIM9 (ENSGGOG00000005354) F8 (ENSGGOG00000003600) ENSGGOG00000003617 #17 FUNDC2 (ENSGGOG00000026954) #8 CMC4 (ENSGGOG00000011528) #9 MTCP1 (ENSGGOG00000037091) #10 BRCC3 (ENSGGOG00000027248) ##11 VBP1 (ENSGGOG00000027061) #12 RAB39B (ENSGGOG00000005567) #13 CLIC2 (ENSGGOG00000023292) #14 ENSGGOG00000024008 #20 SPRY3 (ENSGGOG00000022101) #21 ENSGGOG00000001709 #22 ENSGGOG00000007446 #23 Homo/Pan group ANCESTRAL SPECIES 9 ENSGT00510000047092 ENSGT00940000158744 ENSGT00390000005685 ENSGT00940000160294 ENSGT00940000154783.e.b #8 ENSGT00390000012647 #9 ENSGT00390000006885.a #10 ENSGT00390000000360.q.a #11 ENSGT00390000018904 #12 ENSGT00940000158132 #13 ENSGT00940000161397 #14 ENSGT00940000163020 #18 ENSGT00390000016992.cb.b #17 ENSGT00530000063582.a #20 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 ENSGT00510000049125.c ##23 Human MODERN SPECIES 1827 H2AB1 (ENSG00000274183) #18 F8A1 (ENSG00000288722) #17 FUNDC2 (ENSG00000165775) #8 CMC4 (ENSG00000182712) #9 MTCP1 (ENSG00000214827) #10 BRCC3 (ENSG00000185515) #11 VBP1 (ENSG00000155959) #12 RAB39B (ENSG00000155961) #13 CLIC2 (ENSG00000155962) #14 H2AB2 (ENSG00000277858) #18 F8A2 (ENSG00000288709) #17 F8A3 (ENSG00000277150) #17 H2AB3 (ENSG00000277745) #18 TMLHE (ENSG00000185973) #20 SPRY3 (ENSG00000168939) #21 VAMP7 (ENSG00000124333) #22 IL9R (ENSG00000124334) ##23 WASH6P (ENSG00000182484) Pan ANCESTRAL SPECIES 43 ENSGT00940000158744 ENSGT00390000011549.e ENSGT00390000005685 ENSGT00940000160294 ENSGT00940000163020 #18 ENSGT00390000016992.bb #17 ENSGT00940000154783.e.b #8 ENSGT00390000012647 #9 ENSGT00390000006885.a #10 ENSGT00390000000360.q.a #11 ENSGT00390000018904 #12 ENSGT00940000158132 #13 ENSGT00940000161397 #14 ENSGT00530000063582.a.m #20 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 ENSGT00510000049125.d.a.a #23 Bonobo MODERN SPECIES 369 DKC1 (ENSPPAG00000023820) MPP1 (ENSPPAG00000040588) ENSPPAG00000031767 SMIM9 (ENSPPAG00000035097) F8 (ENSPPAG00000033513) ENSPPAG00000022594 #18 FUNDC2 (ENSPPAG00000028980) #8 CMC4 (ENSPPAG00000030202) #9 MTCP1 (ENSPPAG00000029273) #10 BRCC3 (ENSPPAG00000039895) #11 VBP1 (ENSPPAG00000036017) #12 RAB39B (ENSPPAG00000041186) #13 CLIC2 (ENSPPAG00000041308) #14 ENSPPAG00000037387 #20 SPRY3 (ENSPPAG00000001617) #21 ENSPPAG00000032770 #22 IL9R (ENSPPAG00000035209) ##23 Chimpanzee MODERN SPECIES 972 SMIM9 (ENSPTRG00000028167) F8 (ENSPTRG00000022455) ENSPTRG00000052848 #18 ENSPTRG00000052307 #17 FUNDC2 (ENSPTRG00000044160) #8 CMC4 (ENSPTRG00000039562) #9 MTCP1 (ENSPTRG00000022457) #10 BRCC3 (ENSPTRG00000044491) #11 VBP1 (ENSPTRG00000022460) #12 RAB39B (ENSPTRG00000042083) #13 CLIC2 (ENSPTRG00000022462) #14 ENSPTRG00000044564 #18 ENSPTRG00000046305 #17 ENSPTRG00000045691 #20 SPRY3 (ENSPTRG00000048381) #21 VAMP7 (ENSPTRG00000046127) #22 ENSPTRG00000007524 #23 Gibbon MODERN SPECIES 449 DKC1 (ENSNLEG00000014323) MPP1 (ENSNLEG00000014358) ENSNLEG00000014423 ENSNLEG00000028336 SMIM9 (ENSNLEG00000014424) F8 (ENSNLEG00000014427) ENSNLEG00000018302 #17 ENSNLEG00000014443 #8 CMC4 (ENSNLEG00000027271) #9 MTCP1 (ENSNLEG00000014453) #10 BRCC3 (ENSNLEG00000014460) #11 VBP1 (ENSNLEG00000014475) #12 RAB39B (ENSNLEG00000014505) #13 CLIC2 (ENSNLEG00000028091) #14 SPRY3 (ENSNLEG00000018303) #21 ENSNLEG00000014513 #22 IL9R (ENSNLEG00000014552) #23 Cercopithecidae ANCESTRAL SPECIES 37 ENSGT00390000005685 ENSGT00940000160294 ENSGT00940000163020 #18 ENSGT00390000016992 #17 ENSGT00940000154783.e.b #8 ENSGT00390000012647 #9 ENSGT00390000006885.a #10 ENSGT00390000000360.q.a #11 ENSGT00950000183068.a.a ENSGT00390000018904 #12 ENSGT00910000148519 ENSGT00940000158132 #13 ENSGT00940000161397 #14 ENSGT00530000063582.a #20 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 ENSGT00510000049125 #23 Rhinopithecus ANCESTRAL SPECIES 943 ENSGT00510000047733 #22 ENSGT00510000049125 #23 Golden snub-nosed monkey MODERN SPECIES 297 VAMP7 (ENSRROG00000022660) #22 Black snub-nosed monkey MODERN SPECIES 450 VAMP7 (ENSRBIG00000033072) #22 IL9R (ENSRBIG00000025291) #23 Cercopithecinae ANCESTRAL SPECIES 25 ENSGT00390000005685 ENSGT00940000160294 ENSGT00940000163020 #18 ENSGT00390000016992 #17 ENSGT00940000154783.e.b #8 ENSGT00390000012647 #9 ENSGT00390000006885.a #10 ENSGT00390000000360.q.a #11 ENSGT00950000183068.a.a ENSGT00390000018904.hb #12 ENSGT00910000148519 ENSGT00940000158132 #13 ENSGT00940000161397 #14 ENSGT00530000063582.a #20 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 ENSGT00510000049125 #23 Vervet Monkey MODERN SPECIES 203 MPP1 (ENSCSAG00000006698) SMIM9 (ENSCSAG00000006693) F8 (ENSCSAG00000006668) ENSCSAG00000000521 #18 ENSCSAG00000000520 #18 ENSCSAG00000000519 #17 FUNDC2 (ENSCSAG00000006563) #8 CMC4 (ENSCSAG00000006553) #9 MTCP1 (ENSCSAG00000006547) #10 BRCC3 (ENSCSAG00000006538) #11 ENSCSAG00000006524 #12 RAB39B (ENSCSAG00000006507) #13 CLIC2 (ENSCSAG00000006505) #14 TMLHE (ENSCSAG00000006499) #20 SPRY3 (ENSCSAG00000000518) #21 VAMP7 (ENSCSAG00000006492) #22 IL9R (ENSCSAG00000006485) #23 Cercopithecinae_a ANCESTRAL SPECIES 11 ENSGT00940000160294 ENSGT00390000000950.c.b.d.a.d ENSGT00940000154783.e.b #8 ENSGT00390000012647 #9 ENSGT00390000006885.a #10 ENSGT00390000000360.q.a #11 ENSGT00950000183068.a.a ENSGT00390000018904.hb #12 ENSGT00910000148519 ENSGT00940000158132 #13 ENSGT00940000161397 #14 ENSGT00940000163020 #18 ENSGT00390000016992 #17 ENSGT00530000063582.a #20 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 ENSGT00510000049125 #23 Cercopithecinae_b ANCESTRAL SPECIES 66 ENSGT00940000159803 ENSGT00510000047092 ENSGT00940000158744 ENSGT00390000005685 ENSGT00940000160294 ENSGT00390000000950.c.b.d.a.d ENSGT00940000154783.e.b #8 ENSGT00390000012647 #9 ENSGT00390000006885.a #10 ENSGT00390000000360.q.a #11 ENSGT00390000018904.hb #12 ENSGT00910000148519 ENSGT00940000158132 #13 ENSGT00940000161397 #14 ENSGT00530000063582.a #20 ENSGT00510000047733 #22 ENSGT00510000049125 #23 Olive baboon MODERN SPECIES 792 FLNA (ENSPANG00000025614) ENSPANG00000046902 SMIM9 (ENSPANG00000014914) MPP1 (ENSPANG00000013144) DKC1 (ENSPANG00000011978) GAB3 (ENSPANG00000004006) F8 (ENSPANG00000010602) FUNDC2 (ENSPANG00000004381) #8 CMC4 (ENSPANG00000017783) #9 MTCP1 (ENSPANG00000012244) #10 BRCC3 (ENSPANG00000010904) #11 RAB39B (ENSPANG00000008960) #13 TMLHE (ENSPANG00000024415) #20 CLIC2 (ENSPANG00000008414) #14 VBP1 (ENSPANG00000029954) #12 VAMP7 (ENSPANG00000015780) #22 IL9R (ENSPANG00000004380) #23 Cercopithecinae_d ANCESTRAL SPECIES 265 ENSGT00530000063582.a #20 ENSGT00510000047733 #22 ENSGT00510000049125 #23 Sooty mangabey MODERN SPECIES 476 TMLHE (ENSCATG00000021587) #20 VAMP7 (ENSCATG00000031777) #22 IL9R (ENSCATG00000029289) #23 Drill MODERN SPECIES 1378 VAMP7 (ENSMLEG00000025289) #22 Macaca ANCESTRAL SPECIES 13 ENSGT00940000158744 ENSGT00390000005685 ENSGT00940000160294 ENSGT00940000154783.e.b #8 ENSGT00390000012647 #9 ENSGT00390000006885.a #10 ENSGT00390000000360.q.a #11 ENSGT00950000183068.a.a ENSGT00390000018904.hb #12 ENSGT00940000158132 #13 ENSGT00940000161397 #14 ENSGT00940000163020 #18 ENSGT00390000016992 #17 ENSGT00530000063582.a #20 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 ENSGT00510000049125 #23 Pig-tailed macaque MODERN SPECIES 407 ENSMNEG00000015678 TMLHE (ENSMNEG00000029100) #20 SPRY3 (ENSMNEG00000037832) #21 VAMP7 (ENSMNEG00000024526) #22 IL9R (ENSMNEG00000029519) #23 Macaca_a ANCESTRAL SPECIES 11 ENSGT00510000047092 ENSGT00940000158744 ENSGT00390000005685 ENSGT00940000160294 ENSGT00940000154783.e.b #8 ENSGT00390000006885.a #10 ENSGT00390000000360.q.a #11 ENSGT00950000183068.a.a ENSGT00390000018904.hb #12 ENSGT00940000158132 #13 ENSGT00940000161397 #14 ENSGT00940000163020 #18 ENSGT00390000016992 #17 ENSGT00530000063582.a #20 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 ENSGT00510000049125 #23 Crab-eating macaque MODERN SPECIES 175 ENSMFAG00000060522 F8 (ENSMFAG00000039948) FUNDC2 (ENSMFAG00000038031) #8 ENSMFAG00000045993 MTCP1 (ENSMFAG00000052287) #10 BRCC3 (ENSMFAG00000031106) #11 ENSMFAG00000056611 VBP1 (ENSMFAG00000032032) #12 ENSMFAG00000058523 ENSMFAG00000050091 ENSMFAG00000064770 RAB39B (ENSMFAG00000036188) #13 ENSMFAG00000032659 #14 SPRY3 (ENSMFAG00000014963) #21 ENSMFAG00000053989 VAMP7 (ENSMFAG00000031038) #22 IL9R (ENSMFAG00000000235) #23 Rhesus MODERN SPECIES 327 CMC4 (ENSMMUG00000050298) MTCP1 (ENSMMUG00000010251) #10 BRCC3 (ENSMMUG00000010253) ##11 ENSMMUG00000062127 ENSMMUG00000052111 ENSMMUG00000043981 ENSMMUG00000015095 #12 RAB39B (ENSMMUG00000059069) #13 CLIC2 (ENSMMUG00000061009) #14 H2AB2 (ENSMMUG00000055745) #18 ENSMMUG00000058345 #17 TMLHE (ENSMMUG00000009481) #20 ENSMMUG00000061765 ENSMMUG00000064879 SPRY3 (ENSMMUG00000051319) #21 VAMP7 (ENSMMUG00000002015) #22 IL9R (ENSMMUG00000002016) #23 ENSMMUG00000032340 ENSMMUG00000063448 Platyrrhini ANCESTRAL SPECIES 42 ENSGT00940000158744 ENSGT00390000005685 ENSGT00940000160294 ENSGT00940000154783.f ##8 ENSGT00390000012647.g #9 ENSGT00390000006885.a #10 ENSGT00390000000360.q.a #11 ENSGT00950000183068.a.a ENSGT00390000018904 #12 ENSGT00940000158132 #13 ENSGT00940000161397 #14 ENSGT00390000016992 #17 ENSGT00940000163020 #18 ENSGT00530000063582.a #20 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 ENSGT00510000049125 #23 Cebidae ANCESTRAL SPECIES 27 ENSGT00940000158744 ENSGT00390000005685 ENSGT00940000160294 ENSGT00940000154783.e.a.a.a ##8 ENSGT00390000012647.g #9 ENSGT00390000006885.a #10 ENSGT00390000000360.q.a #11 ENSGT00950000183068.a.a ENSGT00390000018904 #12 ENSGT00940000158132 #13 ENSGT00940000161397 #14 ENSGT00390000016992 #17 ENSGT00940000163020 #18 ENSGT00530000063582.a #20 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 ENSGT00510000049125 #23 Marmoset MODERN SPECIES 78 ENSCJAG00000076498 #18 ENSCJAG00000079192 #17 ENSCJAG00000004287 ##8 CMC4 (ENSCJAG00000078864) #9 MTCP1 (ENSCJAG00000042284) #10 BRCC3 (ENSCJAG00000004308) #11 ENSCJAG00000085645 VBP1 (ENSCJAG00000004338) #12 RAB39B (ENSCJAG00000064579) #13 CLIC2 (ENSCJAG00000004362) #14 ENSCJAG00000073788 #17 ENSCJAG00000071739 #18 TMLHE (ENSCJAG00000021685) #20 ENSCJAG00000082014 ENSCJAG00000073952 VAMP7 (ENSCJAG00000047535) #22 IL9R (ENSCJAG00000008510) #23 ENSCJAG00000071287 Cebidae_a ANCESTRAL SPECIES 78 ENSGT00940000159803 ENSGT00510000047092 ENSGT00940000158744 ENSGT00390000005685 ENSGT00940000160294 ENSGT00940000154783.e.a.a.a ##8 ENSGT00390000012647.g #9 ENSGT00390000006885.a #10 ENSGT00390000000360.q.a #11 ENSGT00390000018904 #12 ENSGT00940000158132 #13 ENSGT00940000161397 #14 ENSGT00390000016992 #17 ENSGT00530000063582.a #20 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 ENSGT00510000049125 #23 Capuchin MODERN SPECIES 574 FUNDC2 (ENSCCAG00000019713) ##8 MTCP1 (ENSCCAG00000023625) #10 BRCC3 (ENSCCAG00000033753) #11 VBP1 (ENSCCAG00000022791) #12 RAB39B (ENSCCAG00000030469) #13 CLIC2 (ENSCCAG00000019952) #14 ENSCCAG00000031797 #17 TMLHE (ENSCCAG00000028430) #20 SPRY3 (ENSCCAG00000031944) #21 VAMP7 (ENSCCAG00000023295) #22 IL9R (ENSCCAG00000028031) #23 Bolivian squirrel monkey DUPLICATION Bolivian squirrel monkey MODERN SPECIES 46 NEUROD1 (ENSSBOG00000015587) ITPRID2 (ENSSBOG00000013272) PPP1R1C (ENSSBOG00000032708) ENSSBOG00000030558 PDE1A (ENSSBOG00000034194) ENSSBOG00000035539 DNAJC10 (ENSSBOG00000020962) FRZB (ENSSBOG00000023256) NCKAP1 (ENSSBOG00000031170) DUSP19 (ENSSBOG00000029076) NUP35 (ENSSBOG00000018676) ENSSBOG00000026419 ZNF804A (ENSSBOG00000025383) TMLHE (ENSSBOG00000033577) #20 SPRY3 (ENSSBOG00000011067) #21 ENSSBOG00000026268 #22 IL9R (ENSSBOG00000029398) #23 ENSSBOG00000023734 ENSSBOG00000031371 ENSSBOG00000022772 Bolivian squirrel monkey MODERN SPECIES 43 ENSSBOG00000028612 SV2C (ENSSBOG00000034394) ENSSBOG00000032555 F2RL2 (ENSSBOG00000026294) IQGAP2 (ENSSBOG00000020078) F2R (ENSSBOG00000033584) ENSSBOG00000027642 F2RL1 (ENSSBOG00000028683) S100Z (ENSSBOG00000016013) ENSSBOG00000013156 CRHBP (ENSSBOG00000024077) AGGF1 (ENSSBOG00000019539) ENSSBOG00000032840 PDE8B (ENSSBOG00000020456) WDR41 (ENSSBOG00000019142) ENSSBOG00000021924 #22 OTP (ENSSBOG00000035833) TBCA (ENSSBOG00000031001) AP3B1 (ENSSBOG00000029511) ENSSBOG00000034436 SCAMP1 (ENSSBOG00000029488) LHFPL2 (ENSSBOG00000033083) ARSB (ENSSBOG00000031483) ENSSBOG00000011617 DMGDH (ENSSBOG00000035140) BHMT (ENSSBOG00000030724) JMY (ENSSBOG00000001249) ENSSBOG00000022728 HOMER1 (ENSSBOG00000030696) TENT2 (ENSSBOG00000025595) CMYA5 (ENSSBOG00000035707) Tarsier MODERN SPECIES 2488 VAMP7 (ENSTSYG00000036722) #22 Strepsirrhini ANCESTRAL SPECIES 55 ENSGT00390000005685 ENSGT00940000160294 ENSGT00940000163020 #18 ENSGT00390000016992 #17 ENSGT00940000154783.f ##8 ENSGT00390000012647 #9 ENSGT00390000006885.a #10 ENSGT00390000000360.r.b ##11 ENSGT00390000000360.r.a.b ##11 ENSGT00950000183068.a.a ENSGT00390000018904 #12 ENSGT00940000158132 #13 ENSGT00940000161397 #14 ENSGT00530000063582.a #20 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 Bushbaby MODERN SPECIES 374 GAB3 (ENSOGAG00000010477) DKC1 (ENSOGAG00000003399) MPP1 (ENSOGAG00000003402) F8 (ENSOGAG00000005241) ENSOGAG00000034494 #17 FUNDC2 (ENSOGAG00000033461) ##8 CMC4 (ENSOGAG00000027720) #9 MTCP1 (ENSOGAG00000005252) #10 ENSOGAG00000005255 ##11 ENSOGAG00000029432 VBP1 (ENSOGAG00000016566) #12 RAB39B (ENSOGAG00000025424) #13 ENSOGAG00000034308 #17 SPRY3 (ENSOGAG00000001824) #21 VAMP7 (ENSOGAG00000030896) #22 Lemuriformes ANCESTRAL SPECIES 130 ENSGT00530000063582.a #20 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 Mouse lemur MODERN SPECIES 169 ENSMICG00000010404 GPR143 (ENSMICG00000010413) SHROOM2 (ENSMICG00000045523) ENSMICG00000007978 ENSMICG00000014241 SLITRK2 (ENSMICG00000003910) ENSMICG00000027545 ENSMICG00000030858 ENSMICG00000033128 ENSMICG00000034786 ENSMICG00000035061 SLITRK4 (ENSMICG00000036015) ENSMICG00000034247 ENSMICG00000017029 LDOC1 (ENSMICG00000034780) VAMP7 (ENSMICG00000001581) #22 ENSMICG00000032959 ENSMICG00000028484 ARHGEF9 (ENSMICG00000007135) ENSMICG00000043875 ENSMICG00000027801 ENSMICG00000036449 ENSMICG00000030636 ENSMICG00000036554 TMLHE (ENSMICG00000010663) #20 RAB39B (ENSMICG00000044410) #13 VBP1 (ENSMICG00000033175) #12 BRCC3 (ENSMICG00000036150) ##11 MTCP1 (ENSMICG00000037190) #10 CMC4 (ENSMICG00000046262) #9 ENSMICG00000028940 ##8 Lemuriformes_a ANCESTRAL SPECIES 316 ENSGT00530000063582.a #20 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 Coquerels sifaka MODERN SPECIES 888 TMLHE (ENSPCOG00000021518) #20 SPRY3 (ENSPCOG00000000267) #21 VAMP7 (ENSPCOG00000012613) #22 Greater bamboo lemur DUPLICATION Greater bamboo lemur MODERN SPECIES 132 PWWP2A (ENSPSMG00000006002) CCNJL (ENSPSMG00000005972) C1QTNF2 (ENSPSMG00000005948) FAM200C (ENSPSMG00000005938) SLU7 (ENSPSMG00000005902) ENSPSMG00000005873 ATP10B (ENSPSMG00000005850) GABRB2 (ENSPSMG00000005588) GABRA6 (ENSPSMG00000005527) GABRA1 (ENSPSMG00000005443) GABRG2 (ENSPSMG00000005134) CCNG1 (ENSPSMG00000004885) NUDCD2 (ENSPSMG00000004873) HMMR (ENSPSMG00000004855) MAT2B (ENSPSMG00000004803) ENSPSMG00000004725 #22 ENSPSMG00000004710 TCEAL9 (ENSPSMG00000004701) BEX3 (ENSPSMG00000004694) TCEAL4 (ENSPSMG00000004676) Greater bamboo lemur MODERN SPECIES 1618 SPRY3 (ENSPSMG00000020633) #21 ENSPSMG00000020616 #22 Euarchontoglires_A ANCESTRAL SPECIES 11 ENSGT00940000158744 ENSGT00390000005685 ENSGT00940000160294 ENSGT00940000163020 #18 ENSGT00390000016992 #17 ENSGT00940000154783.f ##8 ENSGT00390000012647 #9 ENSGT00390000006885.a #10 ENSGT00390000000360.r.b ##11 ENSGT00950000183068.a.a ENSGT00390000018904 #12 ENSGT00940000158132 #13 ENSGT00940000161397 #14 ENSGT00530000063582.a #20 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 Glires ANCESTRAL SPECIES 10 ENSGT00940000158744 ENSGT00390000005685 ENSGT00940000160294 ENSGT00940000163020 #18 ENSGT00390000016992 #17 ENSGT00940000154783.f ##8 ENSGT00390000012647.d #9 ENSGT00390000006885.a #10 ENSGT00390000000360.r.b ##11 ENSGT00950000183068.a.a ENSGT00390000018904 #12 ENSGT00940000158132 #13 ENSGT00940000161397 #14 ENSGT00530000063582.a #20 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 Lagomorpha ANCESTRAL SPECIES 188 ENSGT00940000159803 ENSGT00510000047092 ENSGT00940000158744 ENSGT00940000160294 ENSGT00940000154783.f ##8 ENSGT00390000012647.c.b #9 ENSGT00390000006885.a #10 ENSGT00390000000360.r.b ##11 ENSGT00950000183068.a.a ENSGT00390000018904 #12 ENSGT00940000158132 #13 ENSGT00940000161397 #14 ENSGT00940000163020 #18 ENSGT00530000063582.a #20 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 Rabbit DUPLICATION Rabbit MODERN SPECIES 516 MPP1 (ENSOCUG00000012660) ENSOCUG00000036130 F8 (ENSOCUG00000000142) FUNDC2 (ENSOCUG00000024176) ##8 ENSOCUG00000027749 #9 MTCP1 (ENSOCUG00000009720) #10 BRCC3 (ENSOCUG00000009730) ##11 ENSOCUG00000023330 ENSOCUG00000017448 #12 RAB39B (ENSOCUG00000004254) #13 ENSOCUG00000037631 CLIC2 (ENSOCUG00000007480) #14 ENSOCUG00000024947 #18 TMLHE (ENSOCUG00000008669) #20 SPRY3 (ENSOCUG00000022218) #21 ENSOCUG00000001270 #22 Rabbit MODERN SPECIES 6 ENSOCUG00000034864 ENSOCUG00000026700 ENSOCUG00000026559 ENSOCUG00000029658 ENSOCUG00000022593 ENSOCUG00000005024 SULT1E1 (ENSOCUG00000029429) ENSOCUG00000009486 CSN2 (ENSOCUG00000009494) ENSOCUG00000028049 ENSOCUG00000003355 ODAM (ENSOCUG00000024016) FDCSP (ENSOCUG00000032150) CSN3 (ENSOCUG00000015167) AMTN (ENSOCUG00000002586) ENSOCUG00000034030 #22 ENSOCUG00000024113 AMBN (ENSOCUG00000022916) ENAM (ENSOCUG00000006609) JCHAIN (ENSOCUG00000027219) UTP3 (ENSOCUG00000010003) RUFY3 (ENSOCUG00000010015) GRSF1 (ENSOCUG00000010029) ENSOCUG00000026385 MOB1B (ENSOCUG00000001806) DCK (ENSOCUG00000001265) ENSOCUG00000034841 SLC4A4 (ENSOCUG00000006500) GC (ENSOCUG00000007986) ENSOCUG00000032384 NPFFR2 (ENSOCUG00000006868) Rodentia ANCESTRAL SPECIES 10 ENSGT00940000158744 ENSGT00390000005685 ENSGT00940000160294 ENSGT00940000163020 #18 ENSGT00390000016992 #17 ENSGT00940000154783.f ##8 ENSGT00390000012647.d #9 ENSGT00390000006885.a #10 ENSGT00390000000360.r.b ##11 ENSGT00950000183068.a.a ENSGT00390000018904 #12 ENSGT00940000158132 #13 ENSGT00940000161397 #14 ENSGT00530000063582.a #20 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 Rodentia_B ANCESTRAL SPECIES 16 ENSGT00510000047092 ENSGT00940000158744 ENSGT00390000005685 ENSGT00940000160294 ENSGT00940000154783.f ##8 ENSGT00390000012647.d #9 ENSGT00390000006885.a #10 ENSGT00390000000360.r.b ##11 ENSGT00390000018904 #12 ENSGT00940000158132 #13 ENSGT00940000161397 #14 ENSGT00940000163020 #18 ENSGT00390000016992 #17 ENSGT00530000063582.a #20 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 Kangaroo rat MODERN SPECIES 526 ENSDORG00000000625 Gab3 (ENSDORG00000006809) ENSDORG00000013566 Mpp1 (ENSDORG00000013568) ENSDORG00000024019 F8 (ENSDORG00000013155) ENSDORG00000028874 Fundc2 (ENSDORG00000013156) ##8 Mtcp1 (ENSDORG00000013159) #10 ENSDORG00000029487 #9 ENSDORG00000013161 ##11 ENSDORG00000004628 #12 Rab39b (ENSDORG00000029496) #13 F8a (ENSDORG00000028723) #17 ENSDORG00000014658 #20 ENSDORG00000026230 #22 Myomorpha ANCESTRAL SPECIES 6 ENSGT00510000047092 ENSGT00940000158744 ENSGT00390000005685 ENSGT00940000160294 ENSGT00940000154783.f ##8 ENSGT00390000012647.d #9 ENSGT00390000006885.a #10 ENSGT00390000000360.r.b ##11 ENSGT00390000018904 #12 ENSGT00940000158132 #13 ENSGT00940000161397 #14 ENSGT00940000163020 #18 ENSGT00390000016992 #17 ENSGT00530000063582.a #20 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 Lesser Egyptian jerboa MODERN SPECIES 248 Gab3 (ENSJJAG00000010656) ENSJJAG00000010086 Mpp1 (ENSJJAG00000009953) F8 (ENSJJAG00000003754) Fundc2 (ENSJJAG00000000632) ##8 Cmc4 (ENSJJAG00000018410) #9 Mtcp1 (ENSJJAG00000018300) #10 ENSJJAG00000017846 ##11 ENSJJAG00000017143 #12 Rab39b (ENSJJAG00000016977) #13 ENSJJAG00000016928 #14 ENSJJAG00000016876 #20 ENSJJAG00000016767 #21 ENSJJAG00000016374 ENSJJAG00000016041 #22 Muroidea ANCESTRAL SPECIES 13 ENSGT00510000047092 ENSGT00940000158744 ENSGT00390000005685 ENSGT00940000160294 ENSGT00940000154783.f ##8 ENSGT00390000012647.d #9 ENSGT00390000006885.a #10 ENSGT00390000000360.r.b ##11 ENSGT00390000018904 #12 ENSGT00940000158132 #13 ENSGT00940000161397 #14 ENSGT00940000163020 #18 ENSGT00390000016992 #17 ENSGT00530000063582.a #20 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 Upper Galilee mountains blind mole rat MODERN SPECIES 1181 ENSNGAG00000009939 Gab3 (ENSNGAG00000003725) ENSNGAG00000015724 Mpp1 (ENSNGAG00000017947) F8 (ENSNGAG00000013455) Fundc2 (ENSNGAG00000017968) ##8 Cmc4 (ENSNGAG00000019649) #9 Mtcp1 (ENSNGAG00000020777) #10 ENSNGAG00000000120 ##11 Vbp1 (ENSNGAG00000013672) #12 Rab39b (ENSNGAG00000000596) #13 ENSNGAG00000001653 #14 F8a (ENSNGAG00000011651) #17 ENSNGAG00000012650 #20 ENSNGAG00000015269 #21 ENSNGAG00000016000 #22 Muroidea_A ANCESTRAL SPECIES 7 ENSGT01100000263574.b.j ENSGT00940000159803 ENSGT00510000047092 ENSGT00940000158744 ENSGT00390000005685 ENSGT00940000160294 ENSGT00940000154783.f ##8 ENSGT00390000012647.d #9 ENSGT00390000006885.a #10 ENSGT00390000000360.r.b.a.a ##11 ENSGT00390000018904 #12 ENSGT00940000158132 #13 ENSGT00940000161397 #14 ENSGT00530000063582.a #20 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 Cricetidae ANCESTRAL SPECIES 8 ENSGT01050000244815.B.a.a ENSGT00940000159803 ENSGT00510000047092 ENSGT00940000158744 ENSGT00390000005685 ENSGT00940000160294 ENSGT00940000154783.f.db.b ##8 ENSGT00390000012647.d #9 ENSGT00390000006885.a #10 ENSGT00390000000360.r.b.a.a ##11 ENSGT00390000018904 #12 ENSGT00940000158132 #13 ENSGT00940000161397 #14 ENSGT00530000063582.a #20 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 Cricetidae_B ANCESTRAL SPECIES 28 ENSGT01050000244815.B.a.a ENSGT00940000159803 ENSGT00510000047092 ENSGT00940000158744 ENSGT00390000005685 ENSGT00940000160294 ENSGT00940000154783.f.db.b ##8 ENSGT00390000012647.d #9 ENSGT00390000006885.a #10 ENSGT00390000000360.r.b.a.a ##11 ENSGT00390000018904 #12 ENSGT00940000158132 #13 ENSGT00940000161397 #14 ENSGT00530000063582.a #20 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 Northern American deer mouse MODERN SPECIES 475 Gab3 (ENSPEMG00000012634) Dkc1 (ENSPEMG00000013348) ENSPEMG00000022395 Mpp1 (ENSPEMG00000014261) Smim9 (ENSPEMG00000010945) F8 (ENSPEMG00000014119) ENSPEMG00000026725 ##8 Cmc4 (ENSPEMG00000024388) #9 Mtcp1 (ENSPEMG00000030977) #10 Brcc3 (ENSPEMG00000014353) ##11 Vbp1 (ENSPEMG00000004677) #12 Rab39b (ENSPEMG00000029552) #13 ENSPEMG00000029793 #14 ENSPEMG00000014227 #20 ENSPEMG00000000399 #21 ENSPEMG00000008468 #22 ENSPEMG00000017331 Ct55 (ENSPEMG00000000280) ENSPEMG00000024706 ENSPEMG00000029185 ENSPEMG00000027347 Prairie vole MODERN SPECIES 168 Gab3 (ENSMOCG00000015626) ENSMOCG00000001169 Mpp1 (ENSMOCG00000000082) Smim9 (ENSMOCG00000003619) ENSMOCG00000001114 F8 (ENSMOCG00000006178) Fundc2 (ENSMOCG00000013641) ##8 Mtcp1 (ENSMOCG00000002450) #10 Cmc4 (ENSMOCG00000019858) #9 ENSMOCG00000000841 ##11 Vbp1 (ENSMOCG00000013440) #12 Rab39b (ENSMOCG00000006994) #13 ENSMOCG00000012583 #20 ENSMOCG00000003592 #21 ENSMOCG00000015068 ENSMOCG00000012849 #22 ENSMOCG00000019973 Cricetinae ANCESTRAL SPECIES 46 ENSGT01050000244815.B.a.a ENSGT00410000025802.g.b.q.a ENSGT00940000159803 ENSGT00510000047092 ENSGT00940000158744 ENSGT00390000005685 ENSGT00940000160294 ENSGT00940000154783.f.db.b ##8 ENSGT00390000012647.d #9 ENSGT00390000006885.a #10 ENSGT00390000000360.r.b.a.a ##11 ENSGT00390000018904 #12 ENSGT00940000158132 #13 ENSGT00530000063582.a #20 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 Chinese hamster chok1gshd MODERN SPECIES 16 ENSCGRG00001018213 ENSCGRG00001000852 Gab3 (ENSCGRG00001024780) ENSCGRG00001014574 Mpp1 (ENSCGRG00001000334) Smim9 (ENSCGRG00001020847) F8 (ENSCGRG00001018172) Fundc2 (ENSCGRG00001005074) ##8 Cmc4 (ENSCGRG00001024106) #9 Mtcp1 (ENSCGRG00001021448) #10 Brcc3 (ENSCGRG00001000059) ##11 ENSCGRG00001012855 #12 Rab39b (ENSCGRG00001022502) #13 ENSCGRG00001011867 #20 ENSCGRG00001004214 #21 ENSCGRG00001005752 #22 Golden Hamster MODERN SPECIES 891 ENSMAUG00000006516 Gab3 (ENSMAUG00000000113) Dkc1 (ENSMAUG00000016454) ENSMAUG00000000280 Smim9 (ENSMAUG00000018168) F8 (ENSMAUG00000017844) Fundc2 (ENSMAUG00000013769) ##8 Mtcp1 (ENSMAUG00000013746) #10 Cmc4 (ENSMAUG00000012104) #9 Brcc3 (ENSMAUG00000017183) ##11 Vbp1 (ENSMAUG00000012627) #12 Rab39b (ENSMAUG00000011701) #13 ENSMAUG00000011862 #20 ENSMAUG00000010073 #21 ENSMAUG00000000133 #22 Murinae ANCESTRAL SPECIES 81 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 Rat MODERN SPECIES 3 AABR07035501.1 (ENSRNOG00000049220) Spn-ps6 (ENSRNOG00000054170) MGC112692 (ENSRNOG00000039282) Spnl1 (ENSRNOG00000028414) ENSRNOG00000063487 Zfp157 (ENSRNOG00000001323) Dhrsx (ENSRNOG00000028323) Asmt (ENSRNOG00000001324) Akap17a (ENSRNOG00000028211) Asmtl (ENSRNOG00000028166) Il3ra (ENSRNOG00000001325) Cyp3a62 (ENSRNOG00000001379) ENSRNOG00000063039 ENSRNOG00000070660 Spry3 (ENSRNOG00000060153) #21 Vamp7 (ENSRNOG00000008372) #22 Cyp3a9 (ENSRNOG00000046643) Rpl31l4 (ENSRNOG00000039249) Gjc3 (ENSRNOG00000001329) Azgp1 (ENSRNOG00000001333) Zkscan1 (ENSRNOG00000001335) LOC103691088 (ENSRNOG00000061371) Zscan21 (ENSRNOG00000039234) Zfp113 (ENSRNOG00000063927) Cops6 (ENSRNOG00000001346) Mcm7 (ENSRNOG00000001349) Ap4m1 (ENSRNOG00000001353) Taf6 (ENSRNOG00000001355) Nxpe5 (ENSRNOG00000068266) LOC680825 (ENSRNOG00000069278) Nxpe5l1 (ENSRNOG00000069743) Mus ANCESTRAL SPECIES 64 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 Mus_A ANCESTRAL SPECIES 60 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 Mus_B ANCESTRAL SPECIES 78 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 Mus_C ANCESTRAL SPECIES 67 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 Steppe mouse DUPLICATION Steppe mouse MODERN SPECIES 1828 ENSMSIG00000000978 #21 ENSMSIG00000000993 #22 ENSMSIG00000001025 Steppe mouse MODERN SPECIES 3237 Edn3 (ENSMSIG00000027362) Zfp831 (ENSMSIG00000027355) Prelid3b (ENSMSIG00000027339) Atp5e (ENSMSIG00000027334) Tubb1 (ENSMSIG00000027325) Ctsz (ENSMSIG00000027319) Nelfcd (ENSMSIG00000027285) ENSMSIG00000027279 Gnas (ENSMSIG00000026932) ENSMSIG00000026915 Npepl1 (ENSMSIG00000026902) Stx16 (ENSMSIG00000026872) ENSMSIG00000026862 #22 ENSMSIG00000026853 Vapb (ENSMSIG00000026843) Rab22a (ENSMSIG00000026825) Ankrd60 (ENSMSIG00000026809) 1700021F07Rik (ENSMSIG00000026800) Pmepa1 (ENSMSIG00000026776) Zbp1 (ENSMSIG00000026758) Pck1 (ENSMSIG00000026751) Ctcfl (ENSMSIG00000026727) Rbm38 (ENSMSIG00000026715) Rae1 (ENSMSIG00000026688) Spo11 (ENSMSIG00000026627) Bmp7 (ENSMSIG00000026606) Tfap2c (ENSMSIG00000026572) Fam209 (ENSMSIG00000026567) Rodentia_A ANCESTRAL SPECIES 9 ENSGT00940000158744 ENSGT00390000005685 ENSGT00940000160294 ENSGT00940000163020 #18 ENSGT00390000016992 #17 ENSGT00940000154783.f ##8 ENSGT00390000012647.d #9 ENSGT00390000006885.a #10 ENSGT00390000000360.r.b ##11 ENSGT00950000183068.a.a ENSGT00390000018904 #12 ENSGT00940000158132 #13 ENSGT00940000161397 #14 ENSGT00530000063582.a #20 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 Hystricomorpha ANCESTRAL SPECIES 54 ENSGT00940000159803 ENSGT00510000047092 ENSGT00940000158744 ENSGT00940000160294 ENSGT00940000154783.f ##8 ENSGT00390000012647.d #9 ENSGT00390000006885.a #10 ENSGT00390000000360.r.b ##11 ENSGT00390000000360.r.a.a ##11 ENSGT00950000183068.a.a ENSGT00390000018904 #12 ENSGT00940000158132 #13 ENSGT00940000161397 #14 ENSGT00530000063582.a #20 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 Naked mole-rat female MODERN SPECIES 31 F8 (ENSHGLG00000034300) ENSHGLG00000048533 ENSHGLG00000037924 #17 ENSHGLG00000035621 FUNDC2 (ENSHGLG00000001278) ##8 MTCP1 (ENSHGLG00000001243) #10 ENSHGLG00000001061 ##11 ENSHGLG00000047377 VBP1 (ENSHGLG00000044108) #12 RAB39B (ENSHGLG00000036840) #13 ENSHGLG00000043926 #14 TMLHE (ENSHGLG00000000101) #20 ENSHGLG00000040623 #21 ENSHGLG00000033454 ENSHGLG00000040335 ENSHGLG00000046871 #22 ENSHGLG00000045337 CNGA2 (ENSHGLG00000002074) PRRG3 (ENSHGLG00000042836) ENSHGLG00000043691 ENSHGLG00000040679 ENSHGLG00000019897 VMA21 (ENSHGLG00000037060) ENSHGLG00000047782 GPR50 (ENSHGLG00000000278) ENSHGLG00000000206 ENSHGLG00000032973 CD99L2 (ENSHGLG00000000568) MTMR1 (ENSHGLG00000000382) ENSHGLG00000044631 MTM1 (ENSHGLG00000000507) Hystricomorpha_a ANCESTRAL SPECIES 61 ENSGT00940000159803 ENSGT00510000047092 ENSGT00940000158744 ENSGT00940000160294 ENSGT00940000154783.f ##8 ENSGT00390000012647.d #9 ENSGT00390000006885.a #10 ENSGT00390000000360.r.b ##11 ENSGT00390000000360.r.a.a ##11 ENSGT00950000183068.a.a ENSGT00390000018904 #12 ENSGT00940000158132 #13 ENSGT00940000161397 #14 ENSGT00530000063582.a #20 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 Hystricomorpha_b ANCESTRAL SPECIES 120 ENSGT00940000159803 ENSGT00510000047092 ENSGT00940000158744 ENSGT00940000160294 ENSGT00940000154783.f ##8 ENSGT00390000012647.d #9 ENSGT00390000006885.a #10 ENSGT00390000000360.r.b ##11 ENSGT00390000000360.r.a.a ##11 ENSGT00950000183068.a.a ENSGT00390000018904 #12 ENSGT00940000158132 #13 ENSGT00940000161397 #14 ENSGT00530000063582.a #20 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 Long-tailed chinchilla MODERN SPECIES 301 GAB3 (ENSCLAG00000000759) DKC1 (ENSCLAG00000000720) MPP1 (ENSCLAG00000000595) F8 (ENSCLAG00000000314) FUNDC2 (ENSCLAG00000000230) ##8 CMC4 (ENSCLAG00000000217) #9 MTCP1 (ENSCLAG00000000239) #10 BRCC3 (ENSCLAG00000000163) ##11 ENSCLAG00000000125 VBP1 (ENSCLAG00000000117) #12 RAB39B (ENSCLAG00000000113) #13 CLIC2 (ENSCLAG00000000498) #14 TMLHE (ENSCLAG00000000490) #20 SPRY3 (ENSCLAG00000000405) #21 VAMP7 (ENSCLAG00000000352) #22 Guinea pig MODERN SPECIES 148 IKBKG (ENSCPOG00000021550) ENSCPOG00000026136 GAB3 (ENSCPOG00000002987) DKC1 (ENSCPOG00000008825) MPP1 (ENSCPOG00000008826) F8 (ENSCPOG00000007773) FUNDC2 (ENSCPOG00000015635) ##8 MTCP1 (ENSCPOG00000034922) #10 CMC4 (ENSCPOG00000033896) #9 ENSCPOG00000001882 ##11 VBP1 (ENSCPOG00000013652) #12 RAB39B (ENSCPOG00000039524) #13 CLIC2 (ENSCPOG00000007641) #14 TMLHE (ENSCPOG00000005415) #20 SPRY3 (ENSCPOG00000038854) #21 VAMP7 (ENSCPOG00000024405) #22 Sciuridae ANCESTRAL SPECIES 62 ENSGT00940000158744 ENSGT00390000005685 ENSGT00940000160294 ENSGT00940000163020 #18 ENSGT00390000016992 #17 ENSGT00940000154783.f ##8 ENSGT00390000012647.d #9 ENSGT00390000006885.a #10 ENSGT00390000000360.r.b ##11 ENSGT00950000183068.a.a ENSGT00390000018904 #12 ENSGT00940000158132 #13 ENSGT00940000161397 #14 ENSGT00530000063582.a #20 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 Eurasian red squirrel MODERN SPECIES 156 ENSSVLG00005016435 #18 ENSSVLG00005016424 #17 F8 (ENSSVLG00005016200) ENSSVLG00005016124 ##8 MTCP1 (ENSSVLG00005016077) #10 ENSSVLG00005015678 ##11 ENSSVLG00005015476 #12 RAB39B (ENSSVLG00005015437) #13 CLIC2 (ENSSVLG00005015403) #14 ENSSVLG00005015390 #18 ENSSVLG00005015367 #17 ENSSVLG00005015345 #18 TMLHE (ENSSVLG00005015282) #20 ENSSVLG00005015225 SPRY3 (ENSSVLG00005015208) #21 VAMP7 (ENSSVLG00005015109) #22 Marmotini ANCESTRAL SPECIES 23 ENSGT00530000063582.a #20 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 ENSGT00520000057704 ENSGT00940000155742 ENSGT00950000183158.E ENSGT00940000159700 ENSGT00390000006753.B ENSGT00940000161018 ENSGT00530000063851.b ENSGT01050000244857.C.a.b ENSGT00940000162678 ENSGT00950000183007.a.b.g.a.b.a.c.a ENSGT00390000009443 ENSGT00390000006954 ENSGT00390000002792.bb.a ENSGT00950000183027.a.a ENSGT00950000183054.a.a.b Marmotini_b DUPLICATION Marmotini_b ANCESTRAL SPECIES 16 ENSGT00390000011084 ENSGT00390000006935 ENSGT00940000157199 ENSGT00940000159206 ENSGT00390000014940 ENSGT00940000157703 ENSGT00390000003837 ENSGT00940000154412.A ENSGT00520000057704 ENSGT00530000063582.a #20 ENSGT00950000183055.a.b #21 ENSGT00510000047733.i #22 ENSGT00940000155742 ENSGT00950000183158.E ENSGT00940000159700 ENSGT00390000006753.B ENSGT00940000161018 ENSGT00530000063851.b ENSGT01050000244857.C.a.b ENSGT00940000162678 ENSGT00950000183007.a.b.g.a.b.a.c.a ENSGT00950000183007.a.b.g.a.b.a.c.b ENSGT00390000009443 ENSGT00390000006954 ENSGT00390000002792.bb.a ENSGT00950000183027.a.a ENSGT00950000183054.a.a.b Arctic ground squirrel MODERN SPECIES 646 CLIC2 (ENSUPAG00010008229) #14 RAB39B (ENSUPAG00010008223) #13 VBP1 (ENSUPAG00010008210) #12 ENSUPAG00010008195 BRCC3 (ENSUPAG00010008154) ##11 MTCP1 (ENSUPAG00010008144) #10 CMC4 (ENSUPAG00010008129) #9 ENSUPAG00010008121 ##8 ENSUPAG00010007355 ENSUPAG00010007335 #17 TMLHE (ENSUPAG00010007316) #20 SPRY3 (ENSUPAG00010007313) #21 VAMP7 (ENSUPAG00010007306) #22 Squirrel MODERN SPECIES 104 PHAX (ENSSTOG00000002037) TEX43 (ENSSTOG00000030805) LMNB1 (ENSSTOG00000003539) MARCHF3 (ENSSTOG00000003582) C5orf63 (ENSSTOG00000023735) MEGF10 (ENSSTOG00000010069) PRRC1 (ENSSTOG00000003266) CTXN3 (ENSSTOG00000001125) CCDC192 (ENSSTOG00000031225) ENSSTOG00000032140 #22 SLC12A2 (ENSSTOG00000003238) FBN2 (ENSSTOG00000000208) SLC27A6 (ENSSTOG00000007927) ISOC1 (ENSSTOG00000023369) ADAMTS19 (ENSSTOG00000027482) MINAR2 (ENSSTOG00000011777) CHSY3 (ENSSTOG00000021825) ZNF300 (ENSSTOG00000030911) ENSSTOG00000030572 ENSSTOG00000025044 ENSSTOG00000024119 ENSSTOG00000030802 DCTN4 (ENSSTOG00000013446) ENSSTOG00000027197 MYOZ3 (ENSSTOG00000013433) Marmotini_b ANCESTRAL SPECIES ENSGT00510000047733.j #22 Squirrel MODERN SPECIES 540 SPRY3 (ENSSTOG00000025454) #21 ENSSTOG00000031326 ENSSTOG00000025036 #22 Alpin marmot DUPLICATION Alpin marmot MODERN SPECIES 170 ENSMMMG00000003890 TMLHE (ENSMMMG00000003868) #20 SPRY3 (ENSMMMG00000003859) #21 VAMP7 (ENSMMMG00000003845) #22 Alpin marmot MODERN SPECIES ENSMMMG00000020156 ENSMMMG00000020141 ZNF608 (ENSMMMG00000020134) GRAMD2B (ENSMMMG00000020111) ALDH7A1 (ENSMMMG00000020066) PHAX (ENSMMMG00000020058) TEX43 (ENSMMMG00000020056) ENSMMMG00000020047 LMNB1 (ENSMMMG00000020037) MARCHF3 (ENSMMMG00000020035) C5orf63 (ENSMMMG00000020014) ENSMMMG00000020005 MEGF10 (ENSMMMG00000019988) PRRC1 (ENSMMMG00000019979) CTXN3 (ENSMMMG00000019975) ENSMMMG00000019969 #22 CCDC192 (ENSMMMG00000019959) SLC12A2 (ENSMMMG00000019843) FBN2 (ENSMMMG00000019800) SLC27A6 (ENSMMMG00000019780) ISOC1 (ENSMMMG00000019777) ADAMTS19 (ENSMMMG00000019725) MINAR2 (ENSMMMG00000019719) ZNF300 (ENSMMMG00000019706) ENSMMMG00000019702 ENSMMMG00000019661 SMIM3 (ENSMMMG00000019655) DCTN4 (ENSMMMG00000019623) RBM22 (ENSMMMG00000019619) MYOZ3 (ENSMMMG00000019613) SYNPO (ENSMMMG00000019608) Laurasiatheria ANCESTRAL SPECIES 26 ENSGT00390000005685 ENSGT00940000160294 ENSGT00940000163020 #18 ENSGT00390000016992 #17 ENSGT00940000154783.f ##8 ENSGT00390000012647 #9 ENSGT00390000006885.a #10 ENSGT00390000000360.r ##11 ENSGT00950000183068.a.a ENSGT00390000018904 #12 ENSGT00910000148519 ENSGT00940000158132 #13 ENSGT00940000161397 #14 ENSGT00530000063582.a #20 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 Eulipotyphla ANCESTRAL SPECIES ENSGT00510000047733 #22 Common shrew MODERN SPECIES 1748 VAMP7 (ENSSARG00000004615) #22 Hedgehog MODERN SPECIES 2387 VAMP7 (ENSEEUG00000006561) #22 Laurasiatheria_a ANCESTRAL SPECIES 10 ENSGT00940000163020 #18 ENSGT00390000016992 #17 ENSGT00940000154783.f ##8 ENSGT00390000012647 #9 ENSGT00390000006885.a #10 ENSGT00390000000360.r.d ##11 ENSGT00950000183068.a.a ENSGT00390000018904 #12 ENSGT00910000148519 ENSGT00940000158132 #13 ENSGT00940000161397 #14 ENSGT00530000063582.a #20 ENSGT00950000185382 ENSGT00950000183055.a.b #21 ENSGT01030000235464 ENSGT00510000047733 #22 Laurasiatheria_b ANCESTRAL SPECIES 10 ENSGT00940000163020 #18 ENSGT00390000016992 #17 ENSGT00940000154783.f ##8 ENSGT00390000012647 #9 ENSGT00390000006885.a #10 ENSGT00390000000360.r.d ##11 ENSGT00950000183068.a.a ENSGT00390000018904 #12 ENSGT00910000148519 ENSGT00940000158132 #13 ENSGT00940000161397 #14 ENSGT00530000063582.a #20 ENSGT00950000185382 ENSGT00950000183055.a.b #21 ENSGT01030000235464 ENSGT00510000047733 #22 Carnivora ANCESTRAL SPECIES 11 ENSGT00940000160294 ENSGT00940000163020 #18 ENSGT00390000016992 #17 ENSGT00940000154783.f ##8 ENSGT00390000012647 #9 ENSGT00390000006885.a #10 ENSGT00390000000360.r.d ##11 ENSGT00950000183068.a.a ENSGT00390000018904 #12 ENSGT00910000148519 ENSGT00940000158132 #13 ENSGT00940000161397 #14 ENSGT00530000063582.a #20 ENSGT00950000185382 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 Felidae ANCESTRAL SPECIES 29 ENSGT00390000005685 ENSGT00940000160294 ENSGT00940000163020 #18 ENSGT00390000016992 #17 ENSGT00940000154783.f ##8 ENSGT00390000012647 #9 ENSGT00390000006885.a #10 ENSGT00390000000360.r.d ##11 ENSGT00950000183068.a.a ENSGT00390000018904 #12 ENSGT00940000158132 #13 ENSGT00940000161397 #14 ENSGT00530000063582.a #20 ENSGT01010000226875 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 Panthera ANCESTRAL SPECIES 53 ENSGT00940000160294.k ENSGT00940000163020 #18 ENSGT00390000016992 #17 ENSGT00940000160294.l.a ENSGT00940000154783.f ##8 ENSGT00390000012647 #9 ENSGT00390000006885.a #10 ENSGT00390000000360.r.d ##11 ENSGT00950000183068.a.a ENSGT00390000018904 #12 ENSGT00940000158132 #13 ENSGT00940000161397 #14 ENSGT00530000063582.a #20 ENSGT01010000226875 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 Panthera_a ANCESTRAL SPECIES 96 ENSGT00530000063582.a #20 ENSGT01010000226875 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 leopard MODERN SPECIES 259 SPRY3 (ENSPPRG00000012079) #21 VAMP7 (ENSPPRG00000004989) #22 ENSPPRG00000004932 ENSPPRG00000004918 lion MODERN SPECIES 88 ENSPLOG00000009920 FUNDC2 (ENSPLOG00000009895) ##8 CMC4 (ENSPLOG00000009878) #9 MTCP1 (ENSPLOG00000009860) #10 BRCC3 (ENSPLOG00000009840) ##11 ENSPLOG00000009805 VBP1 (ENSPLOG00000009773) #12 RAB39B (ENSPLOG00000009756) #13 ENSPLOG00000009737 ENSPLOG00000009727 #18 ENSPLOG00000009715 #17 ENSPLOG00000009699 #18 TMLHE (ENSPLOG00000009686) #20 ENSPLOG00000009660 SPRY3 (ENSPLOG00000009644) #21 VAMP7 (ENSPLOG00000009591) #22 GTPBP6 (ENSPLOG00000009500) Tiger MODERN SPECIES 352 SPRY3 (ENSPTIG00000010662) #21 VAMP7 (ENSPTIG00000019664) #22 Cat MODERN SPECIES 252 ENSFCAG00000045185 #17 FUNDC2 (ENSFCAG00000031335) ##8 CMC4 (ENSFCAG00000023645) #9 MTCP1 (ENSFCAG00000029629) #10 BRCC3 (ENSFCAG00000019258) ##11 ENSFCAG00000027511 VBP1 (ENSFCAG00000022037) #12 RAB39B (ENSFCAG00000038920) #13 CLIC2 (ENSFCAG00000038526) #14 H2AB2 (ENSFCAG00000044576) #18 ENSFCAG00000045412 #17 H2AB3 (ENSFCAG00000044965) #18 TMLHE (ENSFCAG00000023758) #20 ENSFCAG00000047531 SPRY3 (ENSFCAG00000028342) #21 VAMP7 (ENSFCAG00000025706) #22 ENSFCAG00000048570 ENSFCAG00000010308 Caniformia ANCESTRAL SPECIES 22 ENSGT00940000163020 #18 ENSGT00390000016992 #17 ENSGT00940000160294 ENSGT00940000154783.f ##8 ENSGT00390000012647 #9 ENSGT00390000006885.a #10 ENSGT00390000000360.r.d ##11 ENSGT00950000183068.a.a ENSGT00390000018904 #12 ENSGT00910000148519 ENSGT00940000158132 #13 ENSGT00940000161397 #14 ENSGT00530000063582.a #20 ENSGT00950000185382 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 Caniformia_b ANCESTRAL SPECIES 27 ENSGT00390000005685 ENSGT00940000160294 ENSGT00940000154783.f ##8 ENSGT00390000006885.a #10 ENSGT00390000000360.r.c.b ##11 ENSGT00390000012647 #9 ENSGT00390000000360.r.d ##11 ENSGT00950000183068.a.a ENSGT00390000018904 #12 ENSGT00910000148519 ENSGT00940000158132 #13 ENSGT00940000161397 #14 ENSGT00940000163020 #18 ENSGT00530000063582.a #20 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 Mustelinae ANCESTRAL SPECIES 272 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 American mink MODERN SPECIES 499 GALNT7 (ENSNVIG00000017803) HMGB2 (ENSNVIG00000017827) SAP30 (ENSNVIG00000017852) SCRG1 (ENSNVIG00000017873) SPRY3 (ENSNVIG00000017883) #21 VAMP7 (ENSNVIG00000017903) #22 Ferret DUPLICATION Ferret MODERN SPECIES 463 ENSMPUG00000019547 ENSMPUG00000019545 ENSMPUG00000016145 ENSMPUG00000019543 GAB3 (ENSMPUG00000016143) MPP1 (ENSMPUG00000016141) F8 (ENSMPUG00000016139) DKC1 (ENSMPUG00000016136) BRCC3 (ENSMPUG00000016134) ##11 ENSMPUG00000016133 ENSMPUG00000016131 #12 RAB39B (ENSMPUG00000016129) #13 CLIC2 (ENSMPUG00000016128) #14 ENSMPUG00000019541 #18 TMLHE (ENSMPUG00000016127) #20 ENSMPUG00000016113 #22 Ferret MODERN SPECIES 465 ENSMPUG00000015066 ENSMPUG00000015069 #22 ENSMPUG00000015070 BAMBI (ENSMPUG00000015071) WAC (ENSMPUG00000015072) ENSMPUG00000015074 MPP7 (ENSMPUG00000015076) ENSMPUG00000015078 Ursidae ANCESTRAL SPECIES ENSGT00510000047733 #22 Ursus ANCESTRAL SPECIES ENSGT00510000047733 #22 American black bear MODERN SPECIES 3234 VAMP7 (ENSUAMG00000027670) #22 Polar bear MODERN SPECIES 140 VAMP7 (ENSUMAG00000017420) #22 Giant Panda MODERN SPECIES 2288 F8 (ENSAMEG00000002491) ENSAMEG00000028778 FUNDC2 (ENSAMEG00000011956) ##8 ENSAMEG00000024837 CMC4 (ENSAMEG00000011961) #9 MTCP1 (ENSAMEG00000028878) #10 BRCC3 (ENSAMEG00000011969) ##11 ENSAMEG00000011976 VBP1 (ENSAMEG00000030279) #12 ENSAMEG00000028809 RAB39B (ENSAMEG00000009075) #13 CLIC2 (ENSAMEG00000009077) #14 ENSAMEG00000026904 #18 ENSAMEG00000025129 #18 TMLHE (ENSAMEG00000013789) #20 ENSAMEG00000006387 #22 Canidae ANCESTRAL SPECIES 50 ENSGT00940000158744 ENSGT00940000163020 #18 ENSGT00390000016992 #17 ENSGT00940000160294 ENSGT00940000154783.f ##8 ENSGT00390000012647.a #9 ENSGT00390000006885.a #10 ENSGT00390000000360.r.d ##11 ENSGT00950000183068.a.a ENSGT00390000018904 #12 ENSGT00940000158132 #13 ENSGT00940000161397 #14 ENSGT00530000063582.a #20 ENSGT00950000185382 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 Red fox MODERN SPECIES 304 TMLHE (ENSVVUG00000002892) #20 SPRY3 (ENSVVUG00000002880) #21 VAMP7 (ENSVVUG00000002875) #22 Canis_lupus ANCESTRAL SPECIES 22 ENSGT00510000047092.a ENSGT00940000158744 ENSGT00940000163020 #18 ENSGT00390000016992.m #17 ENSGT00940000160294 ENSGT00940000154783.f ##8 ENSGT00390000006885.a #10 ENSGT00390000012647.a #9 ENSGT00390000000360.r.c.a ##11 ENSGT00390000018904 #12 ENSGT00940000158132 #13 ENSGT00940000161397 #14 ENSGT00530000063582.a #20 ENSGT00950000185382 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 Dingo MODERN SPECIES 383 ENSCAFG00020008736 #17 F8 (ENSCAFG00020008704) FUNDC2 (ENSCAFG00020008699) ##8 MTCP1 (ENSCAFG00020008697) #10 CMC4 (ENSCAFG00020008696) #9 ENSCAFG00020008684 ##11 VBP1 (ENSCAFG00020008675) #12 RAB39B (ENSCAFG00020008673) #13 CLIC2 (ENSCAFG00020008670) #14 ENSCAFG00020008667 #18 ENSCAFG00020008665 #17 ENSCAFG00020008663 #18 TMLHE (ENSCAFG00020008661) #20 ENSCAFG00020008659 SPRY3 (ENSCAFG00020008657) #21 VAMP7 (ENSCAFG00020008654) #22 Dog MODERN SPECIES 144 LAGE3 (ENSCAFG00845029708) ENSCAFG00845029817 DKC1 (ENSCAFG00845029852) MPP1 (ENSCAFG00845029936) F8 (ENSCAFG00845030098) ENSCAFG00845030269 #18 ENSCAFG00845030278 #17 FUNDC2 (ENSCAFG00845030300) ##11 CMC4 (ENSCAFG00845030338) #9 MTCP1 (ENSCAFG00845030350) #10 VBP1 (ENSCAFG00845017867) #12 RAB39B (ENSCAFG00845017965) #13 CLIC2 (ENSCAFG00845017998) #14 ENSCAFG00845018126 #20 SPRY3 (ENSCAFG00845018191) #21 VAMP7 (ENSCAFG00845018278) #22 ENSCAFG00845018459 Laurasiatheria_c ANCESTRAL SPECIES 10 ENSGT00940000160294 ENSGT00940000163020 #18 ENSGT00390000016992 #17 ENSGT00940000154783.f ##8 ENSGT00390000012647 #9 ENSGT00390000006885.a #10 ENSGT00390000000360.r.d ##11 ENSGT00950000183068.a.a ENSGT00390000018904 #12 ENSGT00940000158132 #13 ENSGT00940000161397 #14 ENSGT00530000063582.a #20 ENSGT00950000185382 ENSGT00950000183055.a.b #21 ENSGT01030000235464 ENSGT00510000047733 #22 Equus ANCESTRAL SPECIES 52 ENSGT00510000047092 ENSGT00940000158744 ENSGT00390000005685 ENSGT00940000160294 ENSGT00940000154783.f ##8 ENSGT00390000012647 #9 ENSGT00390000006885.a #10 ENSGT00390000000360.r.d ##11 ENSGT00390000018904 #12 ENSGT00940000158132 #13 ENSGT00940000161397 #14 ENSGT00530000063582.a #20 ENSGT00950000185382 ENSGT00950000183055.a.b #21 ENSGT01030000235464 ENSGT00510000047733 #22 Horse MODERN SPECIES 480 ENSECAG00000054244 #18 ENSECAG00000029708 #17 ENSECAG00000058802 FUNDC2 (ENSECAG00000026822) ##8 MTCP1 (ENSECAG00000043072) #10 BRCC3 (ENSECAG00000021441) ##11 VBP1 (ENSECAG00000001468) #12 ENSECAG00000047761 ENSECAG00000053801 RAB39B (ENSECAG00000007380) #13 CLIC2 (ENSECAG00000008024) #14 TMLHE (ENSECAG00000012334) #20 SPRY3 (ENSECAG00000058224) #21 ENSECAG00000027923 ENSECAG00000030972 VAMP7 (ENSECAG00000014117) #22 Donkey MODERN SPECIES 36 MPP1 (ENSEASG00005007482) SMIM9 (ENSEASG00005025831) ENSEASG00005033689 ENSEASG00005004499 ENSEASG00005034088 ##8 ENSEASG00005036735 #9 MTCP1 (ENSEASG00005004486) #10 BRCC3 (ENSEASG00005004482) ##11 VBP1 (ENSEASG00005035328) #12 RAB39B (ENSEASG00005034031) #13 ENSEASG00005024036 ENSEASG00005001752 #18 ENSEASG00005001750 #20 ENSEASG00005038101 #21 ENSEASG00005011059 ENSEASG00005011061 #22 ENSEASG00005036960 ENSEASG00005035090 TCEAL1 (ENSEASG00005025524) MORF4L2 (ENSEASG00005002526) ENSEASG00005002530 TMEM31 (ENSEASG00005002551) PLP1 (ENSEASG00005002561) ENSEASG00005029160 ENSEASG00005038628 MCTS1 (ENSEASG00005023018) CUL4B (ENSEASG00005000286) LAMP2 (ENSEASG00005002906) ENSEASG00005035999 ATP1B4 (ENSEASG00005007677) TMEM255A (ENSEASG00005007676) Chiroptera ANCESTRAL SPECIES 48 ENSGT00390000005685 ENSGT00940000160294 ENSGT00940000163020 #18 ENSGT00390000016992 #17 ENSGT00940000154783.f ##8 ENSGT00390000012647 #9 ENSGT00390000006885.a #10 ENSGT00390000000360.r.c.a ##11 ENSGT00390000000360.r.d ##11 ENSGT00950000183068.a.a ENSGT00390000018904 #12 ENSGT00940000158132 #13 ENSGT00940000161397 #14 ENSGT00530000063582.a #20 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 Megabat MODERN SPECIES 4379 VAMP7 (ENSPVAG00000000829) #22 Microchiroptera ANCESTRAL SPECIES 45 ENSGT00510000047092 ENSGT00940000158744 ENSGT00940000160294 ENSGT00390000016992 #17 ENSGT00940000154783.f ##8 ENSGT00390000012647 #9 ENSGT00390000006885.a #10 ENSGT00390000000360.r.d ##11 ENSGT00950000183068.a.a ENSGT00390000018904 #12 ENSGT00940000158132 #13 ENSGT00940000161397 #14 ENSGT00940000163020 #18 ENSGT00530000063582.a #20 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 ENSGT00940000162988 ENSGT00940000163246 ENSGT00940000162502 ENSGT00950000182925.D.a.b.a.a.a.a ENSGT00950000182925.D.a.b.b Microbat MODERN SPECIES 1106 GAB3 (ENSMLUG00000007763) DKC1 (ENSMLUG00000011918) MPP1 (ENSMLUG00000011938) F8 (ENSMLUG00000002117) ENSMLUG00000007776 ##8 CMC4 (ENSMLUG00000024035) #9 MTCP1 (ENSMLUG00000003916) #10 BRCC3 (ENSMLUG00000005420) ##11 VBP1 (ENSMLUG00000015396) #12 RAB39B (ENSMLUG00000007660) #13 CLIC2 (ENSMLUG00000002374) #14 ENSMLUG00000029102 #18 ENSMLUG00000025178 #17 ENSMLUG00000022365 #18 SPRY3 (ENSMLUG00000022306) #21 VAMP7 (ENSMLUG00000012765) #22 ENSMLUG00000011370 ENSMLUG00000025240 FAAH2 (ENSMLUG00000017725) ENSMLUG00000002732 ENSMLUG00000006656 SPIN3 (ENSMLUG00000015431) ENSMLUG00000004357 UBQLN2 (ENSMLUG00000007552) KLF8 (ENSMLUG00000016695) RRAGB (ENSMLUG00000015720) USP51 (ENSMLUG00000015717) ENSMLUG00000006806 ALAS2 (ENSMLUG00000016305) ENSMLUG00000016298 PFKFB1 (ENSMLUG00000016291) Greater horseshoe bat MODERN SPECIES ENSRFEG00010002379 #18 ENSRFEG00010002358 #17 F8 (ENSRFEG00010002258) FUNDC2 (ENSRFEG00010002186) ##8 MTCP1 (ENSRFEG00010000401) #10 BRCC3 (ENSRFEG00010000187) ##11 ENSRFEG00010000146 VBP1 (ENSRFEG00010000140) #12 RAB39B (ENSRFEG00010000135) #13 CLIC2 (ENSRFEG00010000129) #14 ENSRFEG00010000120 #17 ENSRFEG00010000099 #18 ENSRFEG00010000092 #18 TMLHE (ENSRFEG00010000091) #20 SPRY3 (ENSRFEG00010000089) #21 VAMP7 (ENSRFEG00010000088) #22 ENSRFEG00010000087 ENSRFEG00010000086 ENSRFEG00010000085 ENSRFEG00010000084 FAAH2 (ENSRFEG00010000083) ENSRFEG00010000082 ENSRFEG00010000081 AR (ENSRFEG00010000079) OPHN1 (ENSRFEG00010000078) YIPF6 (ENSRFEG00010000077) STARD8 (ENSRFEG00010000076) EFNB1 (ENSRFEG00010000075) PJA1 (ENSRFEG00010000073) NALF2 (ENSRFEG00010000072) EDA (ENSRFEG00010000071) Artiodactyla ANCESTRAL SPECIES 9 ENSGT00940000160294 ENSGT00940000163020 #18 ENSGT00390000016992 #17 ENSGT00940000154783.f ##8 ENSGT00390000012647 #9 ENSGT00390000006885.a #10 ENSGT00390000000360.r.d ##11 ENSGT00950000183068.a.a ENSGT00390000018904 #12 ENSGT00940000158132 #13 ENSGT00940000161397 #14 ENSGT00530000063582.a #20 ENSGT00950000185382 ENSGT00950000183055.a.b #21 ENSGT01030000235464 ENSGT00510000047733 #22 Suina ANCESTRAL SPECIES 7 ENSGT00390000012647 #9 ENSGT00390000006885.a #10 ENSGT00390000000360.q.a #11 ENSGT00950000183068.a.a ENSGT00390000018904 #12 ENSGT00940000158132 #13 ENSGT00390000016992 #17 ENSGT00940000163020 #18 ENSGT00940000160294 ENSGT00390000005685 ENSGT00940000161397 #14 ENSGT00530000063582.a #20 ENSGT00950000185382 ENSGT00950000183055.a.b #21 ENSGT01030000235464 ENSGT00510000047733 #22 Chacoan peccary MODERN SPECIES 44 ENSCWAG00000000488 #18 ENSCWAG00000000499 #17 FUNDC2 (ENSCWAG00000000516) ##8 CMC4 (ENSCWAG00000000535) #9 MTCP1 (ENSCWAG00000000545) #10 BRCC3 (ENSCWAG00000000584) #11 ENSCWAG00000000727 #12 RAB39B (ENSCWAG00000000758) #13 CLIC2 (ENSCWAG00000000773) #14 ENSCWAG00000000788 #18 ENSCWAG00000000796 TMLHE (ENSCWAG00000000814) #20 ENSCWAG00000000835 SPRY3 (ENSCWAG00000000847) #21 ENSCWAG00000000859 VAMP7 (ENSCWAG00000000883) #22 ENSCWAG00000000908 ENSCWAG00000000922 ENSCWAG00000000971 Pig MODERN SPECIES 300 ENSSSCG00000054901 #17 FUNDC2 (ENSSSCG00000012817) ##8 CMC4 (ENSSSCG00000062015) #9 MTCP1 (ENSSSCG00000012816) #10 BRCC3 (ENSSSCG00000012813) #11 ENSSSCG00000012812 VBP1 (ENSSSCG00000012811) #12 RAB39B (ENSSSCG00000024233) #13 ENSSSCG00000057979 #17 ENSSSCG00000055307 #18 CLIC2 (ENSSSCG00000039998) #14 ENSSSCG00000063292 #18 TMLHE (ENSSSCG00000038442) #20 ENSSSCG00000035312 SPRY3 (ENSSSCG00000034345) #21 VAMP7 (ENSSSCG00000029615) #22 Artiodactyla_a ANCESTRAL SPECIES 9 ENSGT00390000005685 ENSGT00940000160294 ENSGT00940000163020 #18 ENSGT00390000016992 #17 ENSGT00940000154783.f ##8 ENSGT00390000012647 #9 ENSGT00390000006885.a #10 ENSGT00390000000360.r.d ##11 ENSGT00950000183068.a.a ENSGT00390000018904 #12 ENSGT00940000158132 #13 ENSGT00940000161397 #14 ENSGT00530000063582.a #20 ENSGT00950000185382 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 Camelidae ANCESTRAL SPECIES 107 ENSGT00940000159803 ENSGT00510000047092 ENSGT00940000158744 ENSGT00390000005685 ENSGT00940000160294 ENSGT00940000154783.f ##8 ENSGT00390000012647 #9 ENSGT00390000006885.a #10 ENSGT00390000000360.r.d ##11 ENSGT00390000018904 #12 ENSGT00940000158132 #13 ENSGT00940000163020 #18 ENSGT00940000161397 #14 ENSGT00530000063582.a #20 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 Arabian camel MODERN SPECIES 204 ENSCDRG00005017097 DKC1 (ENSCDRG00005017117) MPP1 (ENSCDRG00005017184) SMIM9 (ENSCDRG00005017392) F8 (ENSCDRG00005017422) ENSCDRG00005017538 ##8 CMC4 (ENSCDRG00005017574) #9 MTCP1 (ENSCDRG00005017604) #10 BRCC3 (ENSCDRG00005017635) ##11 VBP1 (ENSCDRG00005017794) #12 RAB39B (ENSCDRG00005017901) #13 ENSCDRG00005018049 #18 CLIC2 (ENSCDRG00005018062) #14 TMLHE (ENSCDRG00005018097) #20 SPRY3 (ENSCDRG00005018145) #21 VAMP7 (ENSCDRG00005018159) #22 ENSCDRG00005018222 Alpaca MODERN SPECIES 2991 ENSVPAG00000000273 VAMP7 (ENSVPAG00000000274) #22 Artiodactyla_b ANCESTRAL SPECIES 19 ENSGT00390000005685 ENSGT00940000160294 ENSGT00940000163020 #18 ENSGT00390000016992 #17 ENSGT00940000154783.f ##8 ENSGT00390000012647 #9 ENSGT00390000006885.a #10 ENSGT00390000000360.r.d ##11 ENSGT00950000183068.a.a ENSGT00390000018904 #12 ENSGT00940000158132 #13 ENSGT00940000161397 #14 ENSGT00530000063582.a #20 ENSGT00950000185382 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 Pecora ANCESTRAL SPECIES 28 ENSGT00390000005685 ENSGT00940000160294 ENSGT00390000016992 #17 ENSGT00940000154783.f ##8 ENSGT00390000012647 #9 ENSGT00390000006885.a #10 ENSGT00390000000360.r.d.b ##11 ENSGT00950000183068.a.a ENSGT00390000018904 #12 ENSGT00940000158132 #13 ENSGT00940000161397 #14 ENSGT00940000163020.bb #18 ENSGT00530000063582.a #20 ENSGT00950000185382 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 ENSGT00530000063872.A ENSGT00940000158229 ENSGT00940000155935 ENSGT00940000162167 ENSGT00940000159444 ENSGT00940000154972 ENSGT00940000161201 ENSGT00940000155374 ENSGT00390000006832 ENSGT00940000160946 ENSGT00530000064765 ENSGT00390000017980 ENSGT00940000160515 ENSGT00940000153299.d ENSGT00940000154344.a Yarkand deer MODERN SPECIES 1323 ENSCHYG00000021132 GAB3 (ENSCHYG00000020865) DKC1 (ENSCHYG00000020555) MPP1 (ENSCHYG00000020123) ENSCHYG00000020059 F8 (ENSCHYG00000019104) FUNDC2 (ENSCHYG00000018987) ##8 CMC4 (ENSCHYG00000018917) #9 MTCP1 (ENSCHYG00000018801) #10 ENSCHYG00000018655 ##11 ENSCHYG00000018338 RAB39B (ENSCHYG00000018283) #13 CLIC2 (ENSCHYG00000018163) #14 ENSCHYG00000018139 #18 SPRY3 (ENSCHYG00000018105) #21 VAMP7 (ENSCHYG00000017918) #22 Percora_a ANCESTRAL SPECIES 30 ENSGT00390000005685 ENSGT00940000160294 ENSGT00390000016992 #17 ENSGT00940000154783.f ##8 ENSGT00390000012647 #9 ENSGT00390000006885.a #10 ENSGT00390000000360.r.d.b ##11 ENSGT00950000183068.a.a ENSGT00390000018904 #12 ENSGT00940000158132 #13 ENSGT00940000161397 #14 ENSGT00940000163020.bb #18 ENSGT00530000063582.a #20 ENSGT00950000185382 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 ENSGT00530000063872.A ENSGT00940000158229 ENSGT00940000155935 ENSGT00940000162167 ENSGT00940000159444 ENSGT00940000154972 ENSGT00940000161201 ENSGT00940000155374 ENSGT00390000006832 ENSGT00940000160946 ENSGT00530000064765 ENSGT00390000017980 ENSGT00940000160515 ENSGT00940000153299.d ENSGT00940000154344.a Siberian musk deer MODERN SPECIES 67 MPP1 (ENSMMSG00000011258) SMIM9 (ENSMMSG00000011384) F8 (ENSMMSG00000011419) ENSMMSG00000011482 ##8 CMC4 (ENSMMSG00000011510) #9 MTCP1 (ENSMMSG00000011532) #10 BRCC3 (ENSMMSG00000011560) ##11 VBP1 (ENSMMSG00000011660) #12 RAB39B (ENSMMSG00000011708) #13 ENSMMSG00000011732 #17 CLIC2 (ENSMMSG00000011739) #14 ENSMMSG00000011761 #18 TMLHE (ENSMMSG00000011781) #20 ENSMMSG00000011850 SPRY3 (ENSMMSG00000011861) #21 VAMP7 (ENSMMSG00000011884) #22 ENSMMSG00000012009 ENSMMSG00000013968 ENSMMSG00000013979 ENSMMSG00000014004 Bovidae ANCESTRAL SPECIES 29 ENSGT00940000160294 ENSGT00390000016992.s #17 ENSGT00940000154783.f ##8 ENSGT00390000012647 #9 ENSGT00390000006885.a #10 ENSGT00390000000360.r.d.b ##11 ENSGT00950000183068.a.a ENSGT00390000018904 #12 ENSGT00940000158132 #13 ENSGT00390000016992.t #17 ENSGT00940000163020.bb #18 ENSGT00940000161397 #14 ENSGT00530000063582.a #20 ENSGT00950000185382 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 ENSGT00940000161825.v.a.a.b ENSGT00960000188264.C ENSGT00530000063872.A ENSGT00940000158229 ENSGT00940000155935 ENSGT00940000162167 ENSGT00940000159444 ENSGT00940000154972 ENSGT00940000161201 ENSGT00940000155374 ENSGT00390000006832 ENSGT00940000160946 ENSGT00530000064765 ENSGT00390000017980 ENSGT00940000160515 Caprinae ANCESTRAL SPECIES 53 ENSGT00390000005685 ENSGT00940000160294 ENSGT00390000016992.s #17 ENSGT00940000154783.f ##8 ENSGT00390000012647 #9 ENSGT00390000006885.a #10 ENSGT00390000000360.r.d.b ##11 ENSGT00950000183068.a.a ENSGT00390000018904 #12 ENSGT00940000158132 #13 ENSGT00390000016992.t #17 ENSGT00940000163020.bb #18 ENSGT00940000161397 #14 ENSGT00950000183055.a.b #21 ENSGT00530000063582.a #20 ENSGT00510000047733 #22 ENSGT00940000161825.v.a.a.b ENSGT00960000188264.C Goat MODERN SPECIES 36 ENSCHIG00000015970 VBP1 (ENSCHIG00000019363) #12 RAB39B (ENSCHIG00000000158) #13 ENSCHIG00000018644 #17 ENSCHIG00000000266 CLIC2 (ENSCHIG00000016619) #14 ENSCHIG00000000748 TMLHE (ENSCHIG00000000055) #20 VAMP7 (ENSCHIG00000000128) #22 Rambouillet Sheep MODERN SPECIES 205 MPP1 (ENSOARG00020015726) SMIM9 (ENSOARG00020015879) F8 (ENSOARG00020015985) ENSOARG00020016962 #17 FUNDC2 (ENSOARG00020017001) ##8 CMC4 (ENSOARG00020017081) #9 MTCP1 (ENSOARG00020017110) #10 BRCC3 (ENSOARG00020017169) ##11 VBP1 (ENSOARG00020017496) #12 RAB39B (ENSOARG00020017597) #13 ENSOARG00020017633 #17 ENSOARG00020017655 #18 RIDA (ENSOARG00020017680) CLIC2 (ENSOARG00020017713) #14 SPRY3 (ENSOARG00020017989) #21 VAMP7 (ENSOARG00020018024) #22 ENSOARG00020018236 ENSOARG00020018387 ENSOARG00020018399 ENSOARG00020018429 ENSOARG00020018446 ENSOARG00020018476 ENSOARG00020018489 ENSOARG00020018504 ENSOARG00020018525 ENSOARG00020018581 ENSOARG00020018615 ENSOARG00020018678 ENSOARG00020018703 ENSOARG00020018745 ENSOARG00020018798 Bovinae ANCESTRAL SPECIES 42 ENSGT00940000158744 ENSGT00940000160294 ENSGT00390000016992.s #17 ENSGT00940000154783.f ##8 ENSGT00390000012647 #9 ENSGT00390000006885.a #10 ENSGT00390000000360.r.d.b ##11 ENSGT00950000183068.a.a ENSGT00390000018904 #12 ENSGT00940000158132 #13 ENSGT00390000016992.t #17 ENSGT00940000161397 #14 ENSGT00530000063582.a #20 ENSGT00950000185382 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 ENSGT00940000161825.v.a.a.b ENSGT00390000012182.i.a ENSGT00940000161825.v.a.b ENSGT00910000144363.g.a.a.a.a.a ENSGT00530000063872.A ENSGT00940000158229 ENSGT00940000155935 ENSGT00940000162167 ENSGT00940000159444 ENSGT00940000154972 ENSGT00940000161201 ENSGT00940000155374 ENSGT00390000006832 ENSGT00940000160946 ENSGT00530000064765 Bos ANCESTRAL SPECIES 36 ENSGT00940000160294 ENSGT00390000016992.s #17 ENSGT00940000154783.f ##8 ENSGT00390000012647 #9 ENSGT00390000006885.a #10 ENSGT00390000000360.r.d.b ##11 ENSGT00950000183068.a.a ENSGT00390000018904 #12 ENSGT00390000000673.b.yb.a ENSGT00940000158132 #13 ENSGT00390000016992.t #17 ENSGT00940000161397 #14 ENSGT00530000063582.a #20 ENSGT00950000185382 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 ENSGT00940000161825.v.a.a.b ENSGT00390000012182.i.a.a.a ENSGT00390000012182.i.b ENSGT00940000161825.v.b ENSGT00530000063872.A ENSGT00940000158229 ENSGT00940000155935 ENSGT00940000162167 ENSGT01030000235010.e.b ENSGT00940000159444 ENSGT00940000154972 ENSGT00940000161201 ENSGT00940000155374 ENSGT00390000006832 ENSGT00940000160946 Bos_a ANCESTRAL SPECIES 39 ENSGT00510000047092 ENSGT00940000158744 ENSGT00940000160294 ENSGT00940000154783.f ##8 ENSGT00390000012647 #9 ENSGT00390000006885.a #10 ENSGT00390000000360.r.d.b ##11 ENSGT00950000183068.a.a ENSGT00390000018904 #12 ENSGT00390000000673.b.yb.a ENSGT00940000158132 #13 ENSGT00390000016992.t #17 ENSGT00940000161397 #14 ENSGT00530000063582.a #20 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 ENSGT00940000161825.v.a.a.b ENSGT00390000012182.i.a.a.a Domestic yak MODERN SPECIES 69 ENSBGRG00000017378 #17 F8 (ENSBGRG00000024985) FUNDC2 (ENSBGRG00000024951) ##8 ENSBGRG00000024933 #9 MTCP1 (ENSBGRG00000024911) #10 BRCC3 (ENSBGRG00000024843) ##11 ENSBGRG00000024824 ENSBGRG00000024794 VBP1 (ENSBGRG00000024762) #12 ENSBGRG00000024744 RAB39B (ENSBGRG00000024738) #13 ENSBGRG00000024735 #17 CLIC2 (ENSBGRG00000024695) #14 TMLHE (ENSBGRG00000024645) #20 SPRY3 (ENSBGRG00000024611) #21 VAMP7 (ENSBGRG00000024507) #22 ENSBGRG00000024491 ENSBGRG00000024481 ENSBGRG00000024460 ENSBGRG00000024444 ENSBGRG00000024428 ENSBGRG00000024396 MTM1 (ENSBGRG00000024246) MTMR1 (ENSBGRG00000023860) CD99L2 (ENSBGRG00000023715) ENSBGRG00000023671 GPR50 (ENSBGRG00000023639) ENSBGRG00000023594 ENSBGRG00000023537 PRRG3 (ENSBGRG00000023519) ENSBGRG00000023506 Wild yak MODERN SPECIES 1152 CLIC2 (ENSBMUG00000010104) #14 TMLHE (ENSBMUG00000010079) #20 SPRY3 (ENSBMUG00000010058) #21 VAMP7 (ENSBMUG00000010034) #22 ENSBMUG00000010013 ENSBMUG00000010002 Bos_b ANCESTRAL SPECIES 31 ENSGT00940000160294 ENSGT00390000016992.s #17 ENSGT00940000154783.f ##8 ENSGT00390000012647 #9 ENSGT00390000006885.a #10 ENSGT00390000000360.r.d.b ##11 ENSGT00950000183068.a.a ENSGT00390000018904 #12 ENSGT00390000000673.b.yb.a ENSGT00940000158132 #13 ENSGT00390000016992.t #17 ENSGT00940000161397 #14 ENSGT00530000063582.a #20 ENSGT00950000185382 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 ENSGT00940000161825.v.a.a.b ENSGT00390000012182.i.a.a.a ENSGT00390000012182.i.b ENSGT00940000161825.v.b ENSGT00530000063872.A ENSGT00940000158229 ENSGT00940000155935 ENSGT00940000162167 ENSGT01030000235010.e.b ENSGT00940000159444 ENSGT00940000154972 ENSGT00940000161201 ENSGT00940000155374 ENSGT00390000006832 ENSGT00940000160946 Cow MODERN SPECIES 177 MPP1 (ENSBTAG00000013046) ENSBTAG00000033167 #17 F8 (ENSBTAG00000010726) FUNDC2 (ENSBTAG00000016977) ##8 CMC4 (ENSBTAG00000007813) #9 MTCP1 (ENSBTAG00000045697) #10 BRCC3 (ENSBTAG00000007817) ##11 ENSBTAG00000011144 VBP1 (ENSBTAG00000017265) #12 ENSBTAG00000052586 RAB39B (ENSBTAG00000019779) #13 ENSBTAG00000023978 #17 CLIC2 (ENSBTAG00000010948) #14 TMLHE (ENSBTAG00000011648) #20 SPRY3 (ENSBTAG00000010245) #21 VAMP7 (ENSBTAG00000049615) #22 ZNF185 (ENSBTAG00000005776) NSDHL (ENSBTAG00000009231) CETN2 (ENSBTAG00000007844) GABRQ (ENSBTAG00000013002) ENSBTAG00000048998 GABRA3 (ENSBTAG00000006691) ENSBTAG00000012748 GABRE (ENSBTAG00000013548) CNGA2 (ENSBTAG00000020725) FATE1 (ENSBTAG00000006820) PRRG3 (ENSBTAG00000009775) ENSBTAG00000050821 VMA21 (ENSBTAG00000006296) GPR50 (ENSBTAG00000005950) HMGB3 (ENSBTAG00000005150) Hybrid Bos Indicus MODERN SPECIES 315 FUNDC2 (ENSBIXG00005006322) ##8 CMC4 (ENSBIXG00005001057) #9 MTCP1 (ENSBIXG00005011273) #10 BRCC3 (ENSBIXG00005001036) ##11 ENSBIXG00005011073 VBP1 (ENSBIXG00005011035) #12 ENSBIXG00005010980 RAB39B (ENSBIXG00005010970) #13 ENSBIXG00005010957 #17 ENSBIXG00005000980 CLIC2 (ENSBIXG00005010938) #14 ENSBIXG00005010929 TMLHE (ENSBIXG00005000964) #20 ENSBIXG00005010854 SPRY3 (ENSBIXG00005010830) #21 VAMP7 (ENSBIXG00005010795) #22 ENSBIXG00005010749 ENSBIXG00005010717 ENSBIXG00005000928 ENSBIXG00005000922 ENSBIXG00005010675 ZNF185 (ENSBIXG00005000655) NSDHL (ENSBIXG00005010561) CETN2 (ENSBIXG00005010528) GABRQ (ENSBIXG00005010442) ENSBIXG00005000879 GABRA3 (ENSBIXG00005001938) MAGEA10 (ENSBIXG00005029058) GABRE (ENSBIXG00005029043) CNGA2 (ENSBIXG00005002074) ENSBIXG00005028994 Cetacea ANCESTRAL SPECIES 19 ENSGT00940000160294 ENSGT00940000163020 #18 ENSGT00390000016992 #17 ENSGT00940000154783.f.d.a ##8 ENSGT00390000012647 #9 ENSGT00390000006885.a #10 ENSGT00390000000360.q.a #11 ENSGT00390000000360.r.d ##11 ENSGT00950000183068.a.a ENSGT00390000018904 #12 ENSGT00940000158132 #13 ENSGT00940000161397 #14 ENSGT00530000063582.a #20 ENSGT00950000185382 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 Blue whale MODERN SPECIES 40 ENSBMSG00010021592 #17 ENSBMSG00010021604 ##8 CMC4 (ENSBMSG00010021610) #9 MTCP1 (ENSBMSG00010021613) #10 BRCC3 (ENSBMSG00010021621) ##11 ENSBMSG00010021641 VBP1 (ENSBMSG00010021651) #12 RAB39B (ENSBMSG00010021663) #13 ENSBMSG00010021665 #17 ENSBMSG00010021668 #18 CLIC2 (ENSBMSG00010021672) #14 ENSBMSG00010021679 #18 TMLHE (ENSBMSG00010021682) #20 ENSBMSG00010021687 SPRY3 (ENSBMSG00010021692) #21 VAMP7 (ENSBMSG00010021700) #22 Odontoceti ANCESTRAL SPECIES 19 ENSGT00940000160294 ENSGT00940000163020 #18 ENSGT00390000016992 #17 ENSGT00940000154783.f.d.a ##8 ENSGT00390000012647 #9 ENSGT00390000006885.a #10 ENSGT00390000000360.q.a #11 ENSGT00390000000360.r.d ##11 ENSGT00950000183068.a.a ENSGT00390000018904 #12 ENSGT00940000158132 #13 ENSGT00940000161397 #14 ENSGT00530000063582.a #20 ENSGT00950000185382 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 Sperm whale DUPLICATION Sperm whale MODERN SPECIES 12 FUT11 (ENSPCTG00005019182) SEC24C (ENSPCTG00005019137) SYNPO2L (ENSPCTG00005019094) MYOZ1 (ENSPCTG00005019062) USP54 (ENSPCTG00005018794) PPP3CB (ENSPCTG00005018219) ENSPCTG00005018112 ANXA7 (ENSPCTG00005018039) ENSPCTG00005018005 CFAP70 (ENSPCTG00005017829) MRPS16 (ENSPCTG00005017751) DNAJC9 (ENSPCTG00005017690) FAM149B1 (ENSPCTG00005017627) ECD (ENSPCTG00005017574) NUDT13 (ENSPCTG00005017423) ENSPCTG00005017352 #22 P4HA1 (ENSPCTG00005017193) PLA2G12B (ENSPCTG00005017127) OIT3 (ENSPCTG00005016947) ENSPCTG00005016898 MCU (ENSPCTG00005016821) MICU1 (ENSPCTG00005016668) ANAPC16 (ENSPCTG00005016583) ASCC1 (ENSPCTG00005016464) ENSPCTG00005016423 CHST3 (ENSPCTG00005016377) VSIR (ENSPCTG00005016352) C20H10orf105 (ENSPCTG00005016335) ENSPCTG00005016034 SLC29A3 (ENSPCTG00005015832) PCBD1 (ENSPCTG00005015772) Sperm whale MODERN SPECIES 13 F8 (ENSPCTG00005015296) ENSPCTG00005015667 #18 F8A1 (ENSPCTG00005015687) #17 FUNDC2 (ENSPCTG00005015711) ##8 CMC4 (ENSPCTG00005015746) #9 MTCP1 (ENSPCTG00005015780) #10 BRCC3 (ENSPCTG00005015822) ##11 VBP1 (ENSPCTG00005016073) #12 RAB39B (ENSPCTG00005016182) #13 ENSPCTG00005016223 #18 CLIC2 (ENSPCTG00005016241) #14 ENSPCTG00005016292 #18 TMLHE (ENSPCTG00005016307) #20 ENSPCTG00005016361 SPRY3 (ENSPCTG00005016380) #21 ENSPCTG00005016415 #22 Odontoceti_a ANCESTRAL SPECIES 21 ENSGT00940000160294 ENSGT00940000163020 #18 ENSGT00390000016992 #17 ENSGT00940000154783.f.d.a ##8 ENSGT00390000012647 #9 ENSGT00390000006885.a #10 ENSGT00390000000360.q.a #11 ENSGT00390000000360.r.d ##11 ENSGT00950000183068.a.a ENSGT00390000018904 #12 ENSGT00940000158132 #13 ENSGT00940000161397 #14 ENSGT00530000063582.a #20 ENSGT00950000185382 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 Dolphin MODERN SPECIES 6836 VAMP7 (ENSTTRG00000010643) #22 Odontoceti_b ANCESTRAL SPECIES 17 ENSGT00390000016992.x #17 ENSGT00940000154783.f.d.a ##8 ENSGT00390000012647 #9 ENSGT00390000006885.a #10 ENSGT00390000000360.q.a #11 ENSGT00390000000360.r.d ##11 ENSGT00950000183068.a.a ENSGT00390000018904 #12 ENSGT00940000158132 #13 ENSGT00390000016992.w #17 ENSGT00940000163020.z #18 ENSGT00940000161397 #14 ENSGT00530000063582.a #20 ENSGT00950000185382 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 Monodontidae ANCESTRAL SPECIES 19 ENSGT00940000163020.z #18 ENSGT00390000016992.w #17 ENSGT00940000154783.f.d.a ##8 ENSGT00390000012647 #9 ENSGT00390000006885.a #10 ENSGT00390000000360.q.a #11 ENSGT00950000183068.a.a ENSGT00390000018904 #12 ENSGT00940000158132 #13 ENSGT00390000016992.x #17 ENSGT00940000161397 #14 ENSGT00940000163020.y #18 ENSGT00530000063582.a #20 ENSGT00950000185382 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 Narwhal MODERN SPECIES 310 F8 (ENSMMNG00015013732) ENSMMNG00015013765 #18 ENSMMNG00015013774 ##8 ENSMMNG00015013784 CMC4 (ENSMMNG00015013793) #9 MTCP1 (ENSMMNG00015013799) #10 BRCC3 (ENSMMNG00015013819) #11 ENSMMNG00015013846 VBP1 (ENSMMNG00015013861) #12 RAB39B (ENSMMNG00015013876) #13 CLIC2 (ENSMMNG00015013884) #14 ENSMMNG00015013897 #18 TMLHE (ENSMMNG00015013910) #20 ENSMMNG00015013925 SPRY3 (ENSMMNG00015013931) #21 VAMP7 (ENSMMNG00015013948) #22 DUSP22 (ENSMMNG00015013987) IRF4 (ENSMMNG00015014004) EXOC2 (ENSMMNG00015014030) FOXF2 (ENSMMNG00015014085) FOXC1 (ENSMMNG00015014093) GMDS (ENSMMNG00015014105) ENSMMNG00015010189 MYLK4 (ENSMMNG00015010218) ENSMMNG00015010243 WRNIP1 (ENSMMNG00015010266) ENSMMNG00015010309 NQO2 (ENSMMNG00015010357) RIPK1 (ENSMMNG00015010383) BPHL (ENSMMNG00015010397) TUBB2B (ENSMMNG00015010464) Beluga whale MODERN SPECIES 139 F8 (ENSDLEG00000011690) ENSDLEG00000011965 #18 ENSDLEG00000011977 #17 FUNDC2 (ENSDLEG00000011985) ##8 CMC4 (ENSDLEG00000011999) #9 MTCP1 (ENSDLEG00000012008) #10 BRCC3 (ENSDLEG00000012025) #11 ENSDLEG00000012046 VBP1 (ENSDLEG00000012075) #12 RAB39B (ENSDLEG00000012091) #13 ENSDLEG00000012094 #17 CLIC2 (ENSDLEG00000012100) #14 TMLHE (ENSDLEG00000012114) #20 ENSDLEG00000012124 SPRY3 (ENSDLEG00000012130) #21 VAMP7 (ENSDLEG00000012138) #22 Vaquita MODERN SPECIES 34 ENSPSNG00000022476 #17 ENSPSNG00000022480 ##8 MTCP1 (ENSPSNG00000022484) #10 CMC4 (ENSPSNG00000013473) #9 BRCC3 (ENSPSNG00000013597) ##11 ENSPSNG00000013729 VBP1 (ENSPSNG00000013871) #12 RAB39B (ENSPSNG00000014023) #13 ENSPSNG00000014068 #17 CLIC2 (ENSPSNG00000014084) #14 ENSPSNG00000014126 #18 TMLHE (ENSPSNG00000014201) #20 ENSPSNG00000014251 ENSPSNG00000014269 SPRY3 (ENSPSNG00000014299) #21 VAMP7 (ENSPSNG00000014345) #22 Atlantogenata ANCESTRAL SPECIES 70 ENSGT00940000159803 ENSGT00510000047092 ENSGT00940000158744 ENSGT00390000005685 ENSGT00390000016992 #17 ENSGT00940000160294 ENSGT00940000154783 #8 ENSGT00390000012647 #9 ENSGT00390000006885.a #10 ENSGT00390000000360 #11 ENSGT00950000183068.a.a ENSGT00390000018904 #12 ENSGT00940000158132 #13 ENSGT00940000161397 #14 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 Xenarthra ANCESTRAL SPECIES 1902 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 Armadillo MODERN SPECIES 645 SPRY3 (ENSDNOG00000000635) #21 VAMP7 (ENSDNOG00000037896) #22 Sloth MODERN SPECIES 2074 ENSCHOG00000004846 #22 Afrotheria ANCESTRAL SPECIES 82 ENSGT00510000047092 ENSGT00940000158744 ENSGT00390000005685 ENSGT00390000016992 #17 ENSGT00940000160294 ENSGT00940000154783 #8 ENSGT00390000012647 #9 ENSGT00390000006885.a #10 ENSGT00390000000360 #11 ENSGT00390000018904 #12 ENSGT00940000158132 #13 ENSGT00940000161397 #14 ENSGT00940000163020 #18 ENSGT00530000063582.a #20 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 Tenrec MODERN SPECIES 2296 VAMP7 (ENSETEG00000010894) #22 Afrotheria_a ANCESTRAL SPECIES 81 ENSGT00510000047092 ENSGT00940000158744 ENSGT00390000005685 ENSGT00390000016992 #17 ENSGT00940000160294 ENSGT00940000154783 #8 ENSGT00390000012647 #9 ENSGT00390000006885.a #10 ENSGT00390000000360 #11 ENSGT00390000018904 #12 ENSGT00940000158132 #13 ENSGT00940000161397 #14 ENSGT00940000163020 #18 ENSGT00530000063582.a #20 ENSGT00950000183055.a.b #21 ENSGT00510000047733 #22 Elephant MODERN SPECIES 50 MPP1 (ENSLAFG00000011928) SMIM9 (ENSLAFG00000032056) ENSLAFG00000003610 #17 F8 (ENSLAFG00000015274) ENSLAFG00000015289 #8 CMC4 (ENSLAFG00000020599) #9 MTCP1 (ENSLAFG00000028512) #10 BRCC3 (ENSLAFG00000013564) #11 VBP1 (ENSLAFG00000016507) #12 RAB39B (ENSLAFG00000030959) #13 CLIC2 (ENSLAFG00000011243) #14 ENSLAFG00000032481 #18 TMLHE (ENSLAFG00000011892) #20 ENSLAFG00000012249 SPRY3 (ENSLAFG00000029407) #21 VAMP7 (ENSLAFG00000018052) #22 ENSLAFG00000027692 Hyrax MODERN SPECIES 1858 ENSPCAG00000003747 #22