Laurasiatheria	ANCESTRAL SPECIES		ENSGT00970000194001	ENSGT00940000154436.b #9	ENSGT00940000154436.a #10	ENSGT00940000160362 #11	ENSGT00390000014577.b #13	ENSGT00390000004248 #14	ENSGT00950000182834.C #15	ENSGT00390000000654	ENSGT00940000167024 #16	ENSGT00390000007816 #17	ENSGT00700000105447	ENSGT00940000154721 #18	ENSGT00940000153341.b.p.a.a #19	ENSGT00940000158624 #20	ENSGT00940000158725 #21	ENSGT00390000003084 #22	ENSGT00940000154169.B #23	ENSGT00390000006113 #24	ENSGT00940000160531 #25	ENSGT00940000161958 #26	ENSGT00940000156792 #27	ENSGT00940000160928 #28	ENSGT01090000260044.A.a.b.a.b ##29	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.a ##29	ENSGT01090000260044.A.a.b.a.a.a.a.b ##29	ENSGT01090000260044.A.a.b.a.a.a.a.a.b #29	ENSGT01090000260044.A.a.b.a.a.a.b #30	ENSGT01090000260044.A.a.b.a.a.b #31	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.b ##29	ENSGT00390000006224	ENSGT00390000014984
Laurasiatheria_a	ANCESTRAL SPECIES		ENSGT00970000194001	ENSGT00940000154436.b #9	ENSGT00940000154436.a #10	ENSGT00940000160362 #11	ENSGT00390000014577.b #13	ENSGT00390000004248 #14	ENSGT00950000182834.C #15	ENSGT00390000000654	ENSGT00940000167024 #16	ENSGT00390000007816 #17	ENSGT00700000105447	ENSGT00940000154721 #18	ENSGT00940000153341.b.p.a.a #19	ENSGT00940000158624 #20	ENSGT00940000158725 #21	ENSGT00390000003084 #22	ENSGT00940000154169.B #23	ENSGT00390000006113 #24	ENSGT00940000160531 #25	ENSGT00940000161958 #26	ENSGT00940000156792 #27	ENSGT00940000160928 #28	ENSGT01090000260044.A.a.b.a.b ##29	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.a ##29	ENSGT01090000260044.A.a.b.a.a.a.a.b ##29	ENSGT01090000260044.A.a.b.a.a.a.a.a.b #29	ENSGT01090000260044.A.a.b.a.a.a.b #30	ENSGT01090000260044.A.a.b.a.a.b #31	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.b ##29	ENSGT00390000006224	ENSGT00390000014984
Laurasiatheria_b	ANCESTRAL SPECIES		ENSGT00970000194001	ENSGT00940000154436.b #9	ENSGT00940000154436.a #10	ENSGT00940000160362 #11	ENSGT00390000014577.b #13	ENSGT00390000004248 #14	ENSGT00950000182834.C #15	ENSGT00390000000654	ENSGT00940000167024 #16	ENSGT00390000007816 #17	ENSGT00700000105447	ENSGT00940000154721 #18	ENSGT00940000153341.b.p.a.a #19	ENSGT00940000158624 #20	ENSGT00940000158725 #21	ENSGT00390000003084 #22	ENSGT00940000154169.B #23	ENSGT00390000006113 #24	ENSGT00940000160531 #25	ENSGT00940000161958 #26	ENSGT00940000156792 #27	ENSGT00940000160928 #28	ENSGT01090000260044.A.a.b.a.b ##29	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.a ##29	ENSGT01090000260044.A.a.b.a.a.a.a.b ##29	ENSGT01090000260044.A.a.b.a.a.a.a.a.b #29	ENSGT01090000260044.A.a.b.a.a.a.b #30	ENSGT01090000260044.A.a.b.a.a.b #31	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.b ##29	ENSGT00390000006224	ENSGT00390000014984
Carnivora	ANCESTRAL SPECIES	1	ENSGT00940000157218.C #8	ENSGT00940000154436.b #9	ENSGT00940000154436.a #10	ENSGT00940000160362 #11	ENSGT00390000014577.b #13	ENSGT00390000004248 #14	ENSGT00950000182834.C #15	ENSGT00390000000654	ENSGT00940000167024 #16	ENSGT00390000007816 #17	ENSGT00700000105447	ENSGT00940000154721 #18	ENSGT00940000153341.b.p.a.a #19	ENSGT00940000158624 #20	ENSGT00940000158725 #21	ENSGT00390000003084 #22	ENSGT00940000154169.B #23	ENSGT00390000006113 #24	ENSGT00940000160531 #25	ENSGT00940000161958 #26	ENSGT00940000156792 #27	ENSGT00940000160928 #28	ENSGT01090000260044.A.a.b.a.b ##29	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.a ##29	ENSGT01090000260044.A.a.b.a.a.a.a.b ##29	ENSGT01090000260044.A.a.b.a.a.a.a.a.b #29	ENSGT01090000260044.A.a.b.a.a.a.b #30	ENSGT01090000260044.A.a.b.a.a.b #31	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.b ##29	ENSGT00390000006224	ENSGT00390000014984
Caniformia	ANCESTRAL SPECIES	2	ENSGT00950000183053.A #7	ENSGT00940000157218.C #8	ENSGT00940000154436.b #9	ENSGT00940000154436.a #10	ENSGT00940000160362 #11	ENSGT00390000014577.b #13	ENSGT00390000004248 #14	ENSGT00950000182834.C #15	ENSGT00390000000654	ENSGT00390000007816 #17	ENSGT00940000167024 #16	ENSGT00940000154721 #18	ENSGT00940000153341.b.p.a.a #19	ENSGT00940000158624 #20	ENSGT00940000158725 #21	ENSGT00390000003084 #22	ENSGT00940000154169.B #23	ENSGT00390000006113 #24	ENSGT00940000160531 #25	ENSGT00940000161958 #26	ENSGT00940000156792 #27	ENSGT00940000160928 #28	ENSGT01090000260044.A.a.b.a.b ##29	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.a ##29	ENSGT01090000260044.A.a.b.a.a.a.a.b ##29	ENSGT01090000260044.A.a.b.a.a.a.a.a.b #29	ENSGT01090000260044.A.a.b.a.a.a.b #30	ENSGT01090000260044.A.a.b.a.a.b #31	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.b ##29	ENSGT00390000006224	ENSGT00390000014984
Canidae	ANCESTRAL SPECIES	12	ENSGT00940000161401	ENSGT00950000183053.A #7	ENSGT00940000157218.C #8	ENSGT00940000154436.b #9	ENSGT00940000154436.a #10	ENSGT00940000160362 #11	ENSGT00390000014577.b #13	ENSGT00390000004248 #14	ENSGT00950000182834.C #15	ENSGT00940000167024 #16	ENSGT00390000007816 #17	ENSGT00940000154721 #18	ENSGT00940000153341.b.p.a.a #19	ENSGT00940000158624 #20	ENSGT00940000158725 #21	ENSGT00390000003084 #22	ENSGT00940000154169.B #23	ENSGT00390000006113 #24	ENSGT00940000160531 #25	ENSGT00940000161958 #26	ENSGT00940000156792 #27	ENSGT00940000160928 #28	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.a ##29	ENSGT01090000260044.A.a.b.a.a.a.a.b ##29	ENSGT01090000260044.A.a.b.a.a.a.a.a.b #29	ENSGT01090000260044.A.a.b.a.a.a.b #30	ENSGT01090000260044.A.a.b.a.a.b #31
Canis_lupus	ANCESTRAL SPECIES	16	ENSGT00940000161401	ENSGT00950000183053.A #7	ENSGT00940000157218.C #8	ENSGT00940000154436.b #9	ENSGT00940000154436.a #10	ENSGT00940000160362 #11	ENSGT00390000014577.b #13	ENSGT00390000004248 #14	ENSGT00950000182834.C #15	ENSGT00940000167024 #16	ENSGT00390000007816 #17	ENSGT00940000154721 #18	ENSGT00940000153341.b.p.a.a #19	ENSGT00940000158624 #20	ENSGT00940000158725 #21	ENSGT00390000003084 #22	ENSGT00940000154169.B #23	ENSGT00390000006113 #24	ENSGT00940000160531 #25	ENSGT00940000161958 #26	ENSGT00940000156792 #27	ENSGT00940000160928 #28	ENSGT01090000260044.A.a.b.a.a.a.a.a.b #29	ENSGT01090000260044.A.a.b.a.a.a.b #30	ENSGT01090000260044.A.a.b.a.a.b #31
Dingo	MODERN SPECIES	344	ENSCAFG00020003014 #7	HIVEP3 (ENSCAFG00020003007) #8	GUCA2B (ENSCAFG00020002992) #9	GUCA2A (ENSCAFG00020002988) #10	ENSCAFG00020002985 #11	ENSCAFG00020002970 #12	RIMKLA (ENSCAFG00020002966) #13	ENSCAFG00020002961 #14	PPCS (ENSCAFG00020002958) #15	ENSCAFG00020002938 #16	ENSCAFG00020002934 #17	PPIH (ENSCAFG00020002933) #18	ENSCAFG00020002915 #19	CLDN19 (ENSCAFG00020002906) #20	P3H1 (ENSCAFG00020002341) #21	C1orf50 (ENSCAFG00020002308) #22	ENSCAFG00020002296 #23	SVBP (ENSCAFG00020002290) #24	ERMAP (ENSCAFG00020002272) #25	ZNF691 (ENSCAFG00020002267) #26	SLC2A1 (ENSCAFG00020002164) #27	ENSCAFG00020002137 #28	ENSCAFG00020002126 #29	ENSCAFG00020002123 #30	ENSCAFG00020002116 #31
Dog	MODERN SPECIES	6	EDN2 (ENSCAFG00845008596) #7	HIVEP3 (ENSCAFG00845008551) #8	ENSCAFG00845008525	ENSCAFG00845008507	GUCA2B (ENSCAFG00845008466) #9	GUCA2A (ENSCAFG00845017500) #10	FOXJ3 (ENSCAFG00845017313) #11	ENSCAFG00845017232 #13	ZMYND12 (ENSCAFG00845017105) #14	PPCS (ENSCAFG00845016998) #15	CCDC30 (ENSCAFG00845016827) #17	PPIH (ENSCAFG00845016259) #18	YBX1 (ENSCAFG00845016135) ##19	CLDN19 (ENSCAFG00845016079) #20	P3H1 (ENSCAFG00845015744) #21	C15H1orf50 (ENSCAFG00845015599) #22	ENSCAFG00845015547 #23	SVBP (ENSCAFG00845015518) #24	ERMAP (ENSCAFG00845015470) #25	ZNF691 (ENSCAFG00845015322) #26	SLC2A1 (ENSCAFG00845015278) #27	ENSCAFG00845015197 #28	OR13P3 (ENSCAFG00845015165) #29	OR13P4 (ENSCAFG00845015148) #30	ENSCAFG00845015126 #31	ENSCAFG00845015106
Red fox	DUPLICATION
Red fox	MODERN SPECIES	183	SCMH1 (ENSVVUG00000002129)	ENSVVUG00000002106	EDN2 (ENSVVUG00000002072) #7	HIVEP3 (ENSVVUG00000002055) #8	GUCA2B (ENSVVUG00000002020) #9	GUCA2A (ENSVVUG00000002000) #10	FOXJ3 (ENSVVUG00000001974) #11	RIMKLA (ENSVVUG00000001955) #13	ZMYND12 (ENSVVUG00000001924) #14	PPCS (ENSVVUG00000001916) #15	CCDC30 (ENSVVUG00000001835) #17	PPIH (ENSVVUG00000001795) #18	ENSVVUG00000001759 #19	CLDN19 (ENSVVUG00000001740) #20	P3H1 (ENSVVUG00000001729) #21	ENSVVUG00000001725 #22	ENSVVUG00000001718 #23	SVBP (ENSVVUG00000001709) #24	ERMAP (ENSVVUG00000001657) #25	ZNF691 (ENSVVUG00000001636) #26	SLC2A1 (ENSVVUG00000001613) #27	ENSVVUG00000001560 #28	ENSVVUG00000001511 ##29	ENSVVUG00000001436 ##29	ENSVVUG00000001348 #29	ENSVVUG00000026997 #30
Red fox	MODERN SPECIES	53													CDH6 (ENSVVUG00000000446)	ENSVVUG00000000102	CDH9 (ENSVVUG00000000062)	ENSVVUG00000030312 #22	CDH10 (ENSVVUG00000030310)	ENSVVUG00000030304	CDH12 (ENSVVUG00000030295)	ENSVVUG00000030292	CDH18 (ENSVVUG00000030291)	ENSVVUG00000030279	MYO10 (ENSVVUG00000030278)	ZNF622 (ENSVVUG00000030273)	ENSVVUG00000030264	ANKH (ENSVVUG00000030256)
Caniformia_b	ANCESTRAL SPECIES	1	ENSGT00950000183053.A #7	ENSGT00940000157218.C #8	ENSGT00940000154436.b #9	ENSGT00940000154436.a #10	ENSGT00940000160362 #11	ENSGT00390000014577.b #13	ENSGT00390000004248 #14	ENSGT00950000182834.C #15	ENSGT00390000000654	ENSGT00390000007816 #17	ENSGT00940000167024 #16	ENSGT00940000154721 #18	ENSGT00940000153341.b.p.a.a #19	ENSGT00940000158624 #20	ENSGT00940000158725 #21	ENSGT00390000003084 #22	ENSGT00940000154169.B #23	ENSGT00390000006113 #24	ENSGT00940000160531 #25	ENSGT00940000161958 #26	ENSGT00940000156792 #27	ENSGT00940000160928 #28	ENSGT01090000260044.A.a.b.a.b ##29	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.a ##29	ENSGT01090000260044.A.a.b.a.a.a.a.b ##29	ENSGT01090000260044.A.a.b.a.a.a.a.a.b #29	ENSGT01090000260044.A.a.b.a.a.a.b #30	ENSGT01090000260044.A.a.b.a.a.b #31	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.b ##29	ENSGT00390000006224	ENSGT00390000014984
Ursidae	ANCESTRAL SPECIES		ENSGT00940000161401	ENSGT00950000183053.A #7	ENSGT00940000157218.C #8	ENSGT00940000154436.b #9	ENSGT00940000154436.a #10	ENSGT00940000160362 #11	ENSGT00390000014814.a.b.a.b.a.b	ENSGT00390000014577.b #13	ENSGT00390000004248 #14	ENSGT00950000182834.C #15	ENSGT00390000007816 #17	ENSGT00940000154721 #18	ENSGT00940000153341.b.p.a.a #19	ENSGT00940000158624 #20	ENSGT00940000158725 #21	ENSGT00390000003084 #22	ENSGT00940000154169.B #23	ENSGT00390000006113 #24	ENSGT00940000160531 #25	ENSGT00940000161958 #26	ENSGT00940000156792.d #27	ENSGT00940000160928 #28	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.a ##29	ENSGT01090000260044.A.a.b.a.a.a.a.b ##29	ENSGT01090000260044.A.a.b.a.a.a.a.a.b #29	ENSGT01090000260044.A.a.b.a.a.a.b #30	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.b ##29	ENSGT00390000006224	ENSGT00390000014984	ENSGT00620000088018.h	ENSGT00390000003015
Ursus	ANCESTRAL SPECIES	19	ENSGT00940000161401	ENSGT00950000183053.A #7	ENSGT00940000157218.C #8	ENSGT00940000154436.b #9	ENSGT00940000154436.a #10	ENSGT00940000160362 #11	ENSGT00390000014814.a.b.a.b.a.b.hb	ENSGT00390000014577.b #13	ENSGT00390000004248 #14	ENSGT00950000182834.C #15	ENSGT00390000007816 #17	ENSGT00940000154721 #18	ENSGT00940000153341.b.p.a.a #19	ENSGT00940000158624 #20	ENSGT00940000158725 #21	ENSGT00390000003084 #22	ENSGT01050000245090	ENSGT00390000006113 #24	ENSGT00940000160531 #25	ENSGT00940000161958 #26	ENSGT00940000156792.d #27	ENSGT00940000160928 #28	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.a ##29	ENSGT01090000260044.A.a.b.a.a.a.a.b ##29	ENSGT01090000260044.A.a.b.a.a.a.a.a.b #29	ENSGT01090000260044.A.a.b.a.a.a.b #30	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.b ##29	ENSGT00390000006224	ENSGT00390000014984	ENSGT00620000088018.h	ENSGT00390000003015
American black bear	MODERN SPECIES	878														CLDN19 (ENSUAMG00000000493) #20	P3H1 (ENSUAMG00000000484) #21	C1orf50 (ENSUAMG00000000480) #22	ENSUAMG00000000442	SVBP (ENSUAMG00000000432) #24	ERMAP (ENSUAMG00000000354) #25	ZNF691 (ENSUAMG00000000333) #26	SLC2A1 (ENSUAMG00000000321) #27	ENSUAMG00000000246 #28	ENSUAMG00000000195 ##29
Polar bear	MODERN SPECIES	218	SCMH1 (ENSUMAG00000000166)	ENSUMAG00000024394 #7	HIVEP3 (ENSUMAG00000024393) #8	GUCA2B (ENSUMAG00000024389) #9	GUCA2A (ENSUMAG00000024388) #10	FOXJ3 (ENSUMAG00000024387) #11	ENSUMAG00000024386	RIMKLA (ENSUMAG00000024385) #13	ZMYND12 (ENSUMAG00000024384) #14	ENSUMAG00000024383 #15	CCDC30 (ENSUMAG00000024382) #17	ENSUMAG00000024381 #18	ENSUMAG00000024380 #19	CLDN19 (ENSUMAG00000024378) #20	P3H1 (ENSUMAG00000024377) #21	C1orf50 (ENSUMAG00000024376) #22	TMEM269 (ENSUMAG00000024375)	SVBP (ENSUMAG00000024374) #24	ERMAP (ENSUMAG00000024372) #25	ZNF691 (ENSUMAG00000024370) #26	SLC2A1 (ENSUMAG00000024368) #27	ENSUMAG00000024366 #28	ENSUMAG00000024365 ##29	ENSUMAG00000024364 ##29	ENSUMAG00000024363 #29	ENSUMAG00000024362 #30	ENSUMAG00000024361 #30	ENSUMAG00000024360 #30	ENSUMAG00000024359 ##29	CFAP144 (ENSUMAG00000024358)	EBNA1BP2 (ENSUMAG00000024357)
Giant Panda	MODERN SPECIES	11	FOXO6 (ENSAMEG00000028105)	EDN2 (ENSAMEG00000000522) #7	HIVEP3 (ENSAMEG00000029105) #8	GUCA2B (ENSAMEG00000026602) #9	GUCA2A (ENSAMEG00000000614) #10	FOXJ3 (ENSAMEG00000000591) #11	ENSAMEG00000025996	RIMKLA (ENSAMEG00000030543) #13	ZMYND12 (ENSAMEG00000000560) #14	PPCS (ENSAMEG00000000554) #15	CCDC30 (ENSAMEG00000000529) #17	PPIH (ENSAMEG00000000526) #18	ENSAMEG00000000494 #19	CLDN19 (ENSAMEG00000025177) #20	P3H1 (ENSAMEG00000002135) #21	C1orf50 (ENSAMEG00000002122) #22	ENSAMEG00000002110 #23	SVBP (ENSAMEG00000028888) #24	ERMAP (ENSAMEG00000028264) #25	ZNF691 (ENSAMEG00000019766) #26	SLC2A1 (ENSAMEG00000002058) #27	ENSAMEG00000024985	ENSAMEG00000029749 ##29	ENSAMEG00000002042 #28	ENSAMEG00000019743 ##29	ENSAMEG00000014184 ##29	ENSAMEG00000018828 ##29	ENSAMEG00000019271 #30	CFAP144 (ENSAMEG00000001798)	EBNA1BP2 (ENSAMEG00000001772)	CFAP57 (ENSAMEG00000001757)
Mustelinae	ANCESTRAL SPECIES		ENSGT00950000183053.A #7	ENSGT00940000157218.C #8	ENSGT00940000154436.b #9	ENSGT00940000154436.a #10	ENSGT00940000160362 #11	ENSGT00390000014577.b #13	ENSGT00390000004248 #14	ENSGT00950000182834.C #15	ENSGT00390000000654	ENSGT00390000007816 #17	ENSGT00940000167024 #16	ENSGT00940000154721 #18	ENSGT00940000153341.b.p.a.a #19	ENSGT00940000158624 #20	ENSGT00940000158725 #21	ENSGT00390000003084 #22	ENSGT00940000154169.B #23	ENSGT00390000006113 #24	ENSGT00940000160531 #25	ENSGT00940000161958 #26	ENSGT00940000156792 #27	ENSGT00940000160928 #28	ENSGT01090000260044.A.a.b.a.b ##29	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.a ##29	ENSGT01090000260044.A.a.b.a.a.a.a.b ##29	ENSGT01090000260044.A.a.b.a.a.a.a.a.b #29	ENSGT01090000260044.A.a.b.a.a.a.b #30	ENSGT01090000260044.A.a.b.a.a.b #31	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.b ##29	ENSGT00390000006224	ENSGT00390000014984
American mink	MODERN SPECIES	99	ENSNVIG00000016094	ENSNVIG00000016104	GUCA2B (ENSNVIG00000016106) #9	GUCA2A (ENSNVIG00000016111) #10	FOXJ3 (ENSNVIG00000016128) #11	ENSNVIG00000016219	RIMKLA (ENSNVIG00000016225) #13	ZMYND12 (ENSNVIG00000016240) #14	PPCS (ENSNVIG00000016252) #15	ENSNVIG00000016265 #17	ENSNVIG00000016303 #16	PPIH (ENSNVIG00000016325) #18	ENSNVIG00000016401 #19	CLDN19 (ENSNVIG00000016433) #20	P3H1 (ENSNVIG00000016490) #21	C1orf50 (ENSNVIG00000016518) #22	ENSNVIG00000016541 #23	SVBP (ENSNVIG00000016564) #24	ERMAP (ENSNVIG00000016577) #25	ZNF691 (ENSNVIG00000016612) #26	SLC2A1 (ENSNVIG00000016630) #27	ENSNVIG00000016659 #28	ENSNVIG00000016692 ##29	ENSNVIG00000016713 ##29	ENSNVIG00000016747 ##29	ENSNVIG00000016761 #29	ENSNVIG00000016767 ##29	ENSNVIG00000016771	CFAP144 (ENSNVIG00000016776)	EBP2 (ENSNVIG00000016787)	CFAP57 (ENSNVIG00000016810)
Ferret	MODERN SPECIES	167	EDN2 (ENSMPUG00000014076) #7	ENSMPUG00000014071	HIVEP3 (ENSMPUG00000014066) #8	GUCA2B (ENSMPUG00000014055) #9	GUCA2A (ENSMPUG00000014052) #10	FOXJ3 (ENSMPUG00000014045) #11	RIMKLA (ENSMPUG00000014040) #13	ZMYND12 (ENSMPUG00000014038) #14	PPCS (ENSMPUG00000014036) #15	ENSMPUG00000014033	CCDC30 (ENSMPUG00000014003) #17	ENSMPUG00000013966 #18	ENSMPUG00000013922 #19	CLDN19 (ENSMPUG00000013920) #20	P3H1 (ENSMPUG00000013834) #21	C1orf50 (ENSMPUG00000013823) #22	ENSMPUG00000013820 #23	ERMAP (ENSMPUG00000013797) #25	ZNF691 (ENSMPUG00000013792) #26	SLC2A1 (ENSMPUG00000013787) #27	ENSMPUG00000013783 #28	ENSMPUG00000018588 ##29	ENSMPUG00000018586 ##29	ENSMPUG00000018585 #29	ENSMPUG00000018584 #30	ENSMPUG00000018583 #31	ENSMPUG00000013781 ##29	CFAP144 (ENSMPUG00000013780)	EBNA1BP2 (ENSMPUG00000013779)	CFAP57 (ENSMPUG00000013770)	TMEM125 (ENSMPUG00000018582)
Felidae	ANCESTRAL SPECIES	10	ENSGT00940000161401	ENSGT00950000183053.A #7	ENSGT00940000157218.C #8	ENSGT00940000154436.b #9	ENSGT00940000154436.a #10	ENSGT00940000160362 #11	ENSGT00390000014577.b #13	ENSGT00390000004248 #14	ENSGT00950000182834.C #15	ENSGT00390000007816 #17	ENSGT00700000105447	ENSGT00940000154721 #18	ENSGT00940000153341.b.p.a.a #19	ENSGT00940000158624 #20	ENSGT00940000158725 #21	ENSGT00390000003084 #22	ENSGT00940000154169.B #23	ENSGT00390000006113.s #24	ENSGT00940000160531 #25	ENSGT00940000161958 #26	ENSGT00940000156792 #27	ENSGT00940000160928 #28	ENSGT01090000260044.A.a.b.a.b ##29	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.a ##29	ENSGT01090000260044.A.a.b.a.a.a.a.a.b #29	ENSGT01090000260044.A.a.b.a.a.a.b #30	ENSGT01090000260044.A.a.b.a.a.b #31	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.b ##29	ENSGT00390000006224	ENSGT00390000014984	ENSGT00620000088018.h
Panthera	ANCESTRAL SPECIES	4	ENSGT00950000183053.A #7	ENSGT00940000157218.C #8	ENSGT00940000154436.b #9	ENSGT00940000154436.a #10	ENSGT00940000160362 #11	ENSGT00390000014577.b #13	ENSGT00390000004248 #14	ENSGT00950000182834.C #15	ENSGT00390000007816 #17	ENSGT00700000105447.c	ENSGT00940000154721 #18	ENSGT00940000153341.b.p.a.b.b ##19	ENSGT00940000153341.b.p.a.a #19	ENSGT00940000158624 #20	ENSGT00940000158725 #21	ENSGT00390000003084 #22	ENSGT00940000154169.B #23	ENSGT00390000006113.s #24	ENSGT00940000160531 #25	ENSGT00940000161958 #26	ENSGT00940000156792 #27	ENSGT00940000160928 #28	ENSGT01090000260044.A.a.b.a.b ##29	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.a ##29	ENSGT01090000260044.A.a.b.a.a.a.a.a.b #29	ENSGT01090000260044.A.a.b.a.a.a.b #30	ENSGT01090000260044.A.a.b.a.a.b #31	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.b ##29	ENSGT00390000006224	ENSGT00390000014984	ENSGT00620000088018.h
Tiger	MODERN SPECIES	100	SCMH1 (ENSPTIG00000014755)	EDN2 (ENSPTIG00000014556) #7	HIVEP3 (ENSPTIG00000014261) #8	GUCA2B (ENSPTIG00000013678) #9	GUCA2A (ENSPTIG00000013553) #10	FOXJ3 (ENSPTIG00000013449) #11	RIMKLA (ENSPTIG00000013319) #13	ZMYND12 (ENSPTIG00000013136) #14	ENSPTIG00000012890 #15	CCDC30 (ENSPTIG00000012162) #17	ENSPTIG00000011889	ENSPTIG00000011731 #18	ENSPTIG00000011422 #19	CLDN19 (ENSPTIG00000011238) #20	P3H1 (ENSPTIG00000010953) #21	C1orf50 (ENSPTIG00000010748) #22	ENSPTIG00000010413 #23	ENSPTIG00000010290 #24	ERMAP (ENSPTIG00000009979) #25	ZNF691 (ENSPTIG00000009842) #26	SLC2A1 (ENSPTIG00000009543) #27	ENSPTIG00000008959 #28	ENSPTIG00000006268 ##29	ENSPTIG00000006261 #29	ENSPTIG00000008150 ##29	ENSPTIG00000006260 ##29	CFAP144 (ENSPTIG00000007244)	EBNA1BP2 (ENSPTIG00000006570)	CFAP57 (ENSPTIG00000005008)	C1orf210 (ENSPTIG00000003811)	ENSPTIG00000002753
Panthera_a	ANCESTRAL SPECIES	11	ENSGT00940000161401	ENSGT00950000183053.A #7	ENSGT00940000157218.C #8	ENSGT00940000154436.b #9	ENSGT00940000154436.a #10	ENSGT00940000160362 #11	ENSGT00390000014577.b #13	ENSGT00390000004248 #14	ENSGT00950000182834.C #15	ENSGT00390000007816 #17	ENSGT00700000105447.c	ENSGT00940000154721 #18	ENSGT00940000153341.b.p.a.b.b ##19	ENSGT00940000158624 #20	ENSGT00940000158725 #21	ENSGT00390000003084 #22	ENSGT01050000245090	ENSGT00390000006113.s #24	ENSGT00940000160531 #25	ENSGT00940000161958 #26	ENSGT00940000156792 #27	ENSGT00940000160928 #28	ENSGT01090000260044.A.a.b.a.b ##29	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.a ##29	ENSGT01090000260044.A.a.b.a.a.a.a.a.b #29	ENSGT01090000260044.A.a.b.a.a.a.b #30	ENSGT01090000260044.A.a.b.a.a.b #31	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.b ##29	ENSGT00390000006224	ENSGT00390000014984	ENSGT00620000088018.h
leopard	DUPLICATION
leopard	MODERN SPECIES	122	FOXO6 (ENSPPRG00000004188)	EDN2 (ENSPPRG00000003973) #7	HIVEP3 (ENSPPRG00000003849) #8	GUCA2B (ENSPPRG00000003097) #9	GUCA2A (ENSPPRG00000002704) #10	FOXJ3 (ENSPPRG00000002362) #11	RIMKLA (ENSPPRG00000023129) #13	ZMYND12 (ENSPPRG00000023490) #14	PPCS (ENSPPRG00000023531) #15	CCDC30 (ENSPPRG00000023928) #17	ENSPPRG00000016664	ENSPPRG00000015957 #18	YBX1 (ENSPPRG00000014539) ##19	CLDN19 (ENSPPRG00000012935) #20	P3H1 (ENSPPRG00000012621) #21	ENSPPRG00000011250 #22	TMEM269 (ENSPPRG00000010652)	ENSPPRG00000010025 #24	ERMAP (ENSPPRG00000009921) #25	ZNF691 (ENSPPRG00000009201) #26	SLC2A1 (ENSPPRG00000008282) #27	ENSPPRG00000007909 #28	ENSPPRG00000007360 ##29	ENSPPRG00000018433 ##29	ENSPPRG00000006895 #29	ENSPPRG00000018339 #31	ENSPPRG00000018333 ##29	CFAP144 (ENSPPRG00000005822)	EBNA1BP2 (ENSPPRG00000005080)	CFAP57 (ENSPPRG00000004273)	TMEM125 (ENSPPRG00000018226)
leopard	MODERN SPECIES	7	CHP1 (ENSPPRG00000011159)	OIP5 (ENSPPRG00000011176)	NUSAP1 (ENSPPRG00000011514)	NDUFAF1 (ENSPPRG00000011567)	RTF1 (ENSPPRG00000011578)	ITPKA (ENSPPRG00000011595)	ENSPPRG00000011716	RPAP1 (ENSPPRG00000011864)	TYRO3 (ENSPPRG00000012013)	ENSPPRG00000012038	MGA (ENSPPRG00000012279)	MAPKBP1 (ENSPPRG00000012479)	JMJD7 (ENSPPRG00000012660)	PLA2G4B (ENSPPRG00000012746)	SPTBN5 (ENSPPRG00000012931)	ENSPPRG00000013276 #22	EHD4 (ENSPPRG00000013283)	PLA2G4E (ENSPPRG00000013329)	PLA2G4D (ENSPPRG00000013503)	PLA2G4F (ENSPPRG00000013733)	VPS39 (ENSPPRG00000013971)	TMEM87A (ENSPPRG00000014187)	GANC (ENSPPRG00000014695)	CAPN3 (ENSPPRG00000016633)	ZNF106 (ENSPPRG00000017499)	SNAP23 (ENSPPRG00000018274)	LRRC57 (ENSPPRG00000020498)	HAUS2 (ENSPPRG00000020590)	CDAN1 (ENSPPRG00000022298)	TTBK2 (ENSPPRG00000025071)	UBR1 (ENSPPRG00000025066)
lion	MODERN SPECIES	8	MACF1 (ENSPLOG00000012948)	ENSPLOG00000011799	GUCA2B (ENSPLOG00000011763) #9	GUCA2A (ENSPLOG00000011719) #10	ENSPLOG00000011700	FOXJ3 (ENSPLOG00000011586) #11	RIMKLA (ENSPLOG00000011527) #13	ZMYND12 (ENSPLOG00000011443) #14	PPCS (ENSPLOG00000011362) #15	ENSPLOG00000011309	CCDC30 (ENSPLOG00000010752) #17	ENSPLOG00000010560 #18	YBX1 (ENSPLOG00000010496) ##19	CLDN19 (ENSPLOG00000010361) #20	P3H1 (ENSPLOG00000010321) #21	C1orf50 (ENSPLOG00000010275) #22	TMEM269 (ENSPLOG00000010246)	ENSPLOG00000010220 #24	ERMAP (ENSPLOG00000010188) #25	ZNF691 (ENSPLOG00000010170) #26	SLC2A1 (ENSPLOG00000010149) #27	ENSPLOG00000010053 #28	ENSPLOG00000010019 ##29	ENSPLOG00000009994 ##29	ENSPLOG00000009937 #29	ENSPLOG00000009917 #30	ENSPLOG00000009899 #31	ENSPLOG00000009885 ##29	CFAP144 (ENSPLOG00000009861)	EBNA1BP2 (ENSPLOG00000009826)	CFAP57 (ENSPLOG00000009653)
Cat	MODERN SPECIES	239	FOXO6 (ENSFCAG00000042868)	EDN2 (ENSFCAG00000014032) #7	HIVEP3 (ENSFCAG00000014035) #8	ENSFCAG00000048899	GUCA2B (ENSFCAG00000006182) #9	GUCA2A (ENSFCAG00000006183) #10	FOXJ3 (ENSFCAG00000026568) #11	RIMKLA (ENSFCAG00000043810) #13	ZMYND12 (ENSFCAG00000012835) #14	PPCS (ENSFCAG00000024374) #15	CCDC30 (ENSFCAG00000011261) #17	PPIH (ENSFCAG00000028168) #18	YBX1 (ENSFCAG00000022604) #19	CLDN19 (ENSFCAG00000036865) #20	P3H1 (ENSFCAG00000012192) #21	CC1H1orf50 (ENSFCAG00000012195) #22	ENSFCAG00000044811 #23	SVBP (ENSFCAG00000035612) #24	ERMAP (ENSFCAG00000003484) #25	ZNF691 (ENSFCAG00000034864) #26	SLC2A1 (ENSFCAG00000006060) #27	ENSFCAG00000023472 #28	ENSFCAG00000040395 ##29	ENSFCAG00000038707 #29	ENSFCAG00000040935 ##29	CFAP144 (ENSFCAG00000026352)	EBNA1BP2 (ENSFCAG00000022345)	CFAP57 (ENSFCAG00000024543)	CC1H1orf210 (ENSFCAG00000043373)	TIE1 (ENSFCAG00000015111)	MPL (ENSFCAG00000015112)
Laurasiatheria_c	ANCESTRAL SPECIES		ENSGT00950000183053.A #7	ENSGT00940000157218.C #8	ENSGT00970000194001	ENSGT00940000154436.b #9	ENSGT00940000154436.a #10	ENSGT00940000160362 #11	ENSGT00390000014577.b #13	ENSGT00390000004248 #14	ENSGT00950000182834.C #15	ENSGT00390000000654	ENSGT00390000007816 #17	ENSGT00940000154721 #18	ENSGT00940000153341.b.p.a.a #19	ENSGT00940000158624 #20	ENSGT00940000158725 #21	ENSGT00390000003084 #22	ENSGT00940000154169.B #23	ENSGT00390000006113 #24	ENSGT00940000160531 #25	ENSGT00940000161958 #26	ENSGT00940000156792 #27	ENSGT00940000160928 #28	ENSGT01090000260044.A.a.b.a.b ##29	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.a ##29	ENSGT01090000260044.A.a.b.a.a.a.a.b ##29	ENSGT01090000260044.A.a.b.a.a.a.a.a.b #29	ENSGT01090000260044.A.a.b.a.a.a.b #30	ENSGT01090000260044.A.a.b.a.a.b #31	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.b ##29	ENSGT00390000006224	ENSGT00390000014984
Chiroptera	ANCESTRAL SPECIES		ENSGT00940000157999	ENSGT00940000161401.f	ENSGT00950000183053.A #7	ENSGT00940000157218.C #8	ENSGT00940000154436.b #9	ENSGT00940000154436.a #10	ENSGT00940000160362 #11	ENSGT00390000014577.b #13	ENSGT00390000004248 #14	ENSGT00950000182834.C #15	ENSGT00390000007816 #17	ENSGT00940000154721 #18	ENSGT00940000153341.b.p.a.a #19	ENSGT00940000158624 #20	ENSGT00940000158725 #21	ENSGT00390000003084 #22	ENSGT00940000154169.B #23	ENSGT00390000006113 #24	ENSGT00940000160531 #25	ENSGT00940000161958 #26	ENSGT00940000156792 #27	ENSGT00940000160928 #28	ENSGT01090000260044.A.a.b.a.a.a.a.a.b #29	ENSGT01090000260044.A.a.b.a.a.a.b #30	ENSGT00390000006224	ENSGT00390000014984	ENSGT00620000088018.h	ENSGT00390000003015	ENSGT00510000048988	ENSGT00940000157693	ENSGT00940000161225
Microchiroptera	ANCESTRAL SPECIES	1	ENSGT00940000157999	ENSGT00940000161401.f	ENSGT00950000183053.A #7	ENSGT00940000157218.C #8	ENSGT00940000154436.b #9	ENSGT00940000154436.a #10	ENSGT00940000160362 #11	ENSGT00390000014577.b #13	ENSGT00390000004248 #14	ENSGT00950000182834.C #15	ENSGT00390000007816 #17	ENSGT00940000154721 #18	ENSGT00940000153341.b.p.a.a #19	ENSGT00940000158624 #20	ENSGT00940000158725 #21	ENSGT00390000003084 #22	ENSGT00940000154169.B #23	ENSGT00390000006113 #24	ENSGT00940000160531 #25	ENSGT00940000161958 #26	ENSGT00940000156792 #27	ENSGT01090000260044.A.a.b.a.b ##29	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.a ##29	ENSGT00390000014984	ENSGT00620000088018.h	ENSGT00390000003015	ENSGT00510000048988	ENSGT00940000157693	ENSGT00940000161225	ENSGT00950000183104.A.a.a	ENSGT01050000244838.H.d
Microbat	MODERN SPECIES	974	SLFNL1 (ENSMLUG00000007340)	SCMH1 (ENSMLUG00000007367)	EDN2 (ENSMLUG00000004668) #7	HIVEP3 (ENSMLUG00000004675) #8	GUCA2B (ENSMLUG00000005765) #9	GUCA2A (ENSMLUG00000009372) #10	FOXJ3 (ENSMLUG00000005770) #11	RIMKLA (ENSMLUG00000005776) #13	ZMYND12 (ENSMLUG00000017037) #14	PPCS (ENSMLUG00000017041) #15	CCDC30 (ENSMLUG00000017045) #17	PPIH (ENSMLUG00000025400) #18	ENSMLUG00000013593 #19	CLDN19 (ENSMLUG00000013599) #20	P3H1 (ENSMLUG00000013602) #21	C1orf50 (ENSMLUG00000013623) #22	ENSMLUG00000013627 #23	SVBP (ENSMLUG00000022556) #24	ERMAP (ENSMLUG00000013632) #25	ZNF691 (ENSMLUG00000013638) #26	SLC2A1 (ENSMLUG00000013639) #27	ENSMLUG00000023571 #28	ENSMLUG00000028678 #29	ENSMLUG00000023693 #30	ENSMLUG00000028816	CFAP144 (ENSMLUG00000027307)	ENSMLUG00000011409	CFAP57 (ENSMLUG00000000590)	TMEM125 (ENSMLUG00000012571)	ENSMLUG00000012574	TIE1 (ENSMLUG00000012578)
Greater horseshoe bat	MODERN SPECIES	27	FOXO6 (ENSRFEG00010005506)	EDN2 (ENSRFEG00010005516) #7	HIVEP3 (ENSRFEG00010005539) #8	GUCA2B (ENSRFEG00010005559) #9	GUCA2A (ENSRFEG00010005573) #10	FOXJ3 (ENSRFEG00010005612) #11	RIMKLA (ENSRFEG00010005649) #13	ZMYND12 (ENSRFEG00010005667) #14	ENSRFEG00010005684	PPCS (ENSRFEG00010005708) #15	CCDC30 (ENSRFEG00010005784) #17	ENSRFEG00010005908 #18	YBX1 (ENSRFEG00010005947) ##19	CLDN19 (ENSRFEG00010005994) #20	P3H1 (ENSRFEG00010006047) #21	C1orf50 (ENSRFEG00010006093) #22	TMEM269 (ENSRFEG00010006121)	SVBP (ENSRFEG00010006152) #24	ERMAP (ENSRFEG00010006239) #25	ZNF691 (ENSRFEG00010006345) #26	SLC2A1 (ENSRFEG00010006370) #27	ENSRFEG00010006411 ##29	ENSRFEG00010006438 ##29	EBNA1BP2 (ENSRFEG00010006468)	CFAP144 (ENSRFEG00010006510)	CFAP57 (ENSRFEG00010006543)	TMEM125 (ENSRFEG00010006646)	ENSRFEG00010006662	TIE1 (ENSRFEG00010006700)	MPL (ENSRFEG00010006779)	CDC20 (ENSRFEG00010006865)
Megabat	MODERN SPECIES	6441														CLDN19 (ENSPVAG00000017483) #20	P3H1 (ENSPVAG00000017479) #21	C1orf50 (ENSPVAG00000017478) #22	SVBP (ENSPVAG00000017477) #24	ERMAP (ENSPVAG00000017476) #25	ZNF691 (ENSPVAG00000017475) #26	SLC2A1 (ENSPVAG00000017474) #27
Equus	ANCESTRAL SPECIES	2	ENSGT00950000183053.A #7	ENSGT00940000157218.C #8	ENSGT00970000194001	ENSGT00940000154436.b #9	ENSGT00940000154436.a #10	ENSGT00940000160362 #11	ENSGT00390000014577.b #13	ENSGT00390000004248 #14	ENSGT00950000182834.C #15	ENSGT00390000000654	ENSGT00390000007816 #17	ENSGT00940000154721 #18	ENSGT00940000153341.b.p.a.a.ab #19	ENSGT00940000158624 #20	ENSGT00940000158725 #21	ENSGT00390000003084 #22	ENSGT00940000154169.B #23	ENSGT00390000006113 #24	ENSGT00940000160531 #25	ENSGT00940000161958 #26	ENSGT00940000156792 #27	ENSGT00940000160928 #28	ENSGT01090000260044.A.a.b.a.b ##29	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.a ##29	ENSGT01090000260044.A.a.b.a.a.a.a.b ##29	ENSGT01090000260044.A.a.b.a.a.a.a.a.b #29	ENSGT01090000260044.A.a.b.a.a.a.b #30	ENSGT01090000260044.A.a.b.a.a.b #31	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.b ##29	ENSGT00390000006224	ENSGT00390000014984
Donkey	MODERN SPECIES	25	EDN2 (ENSEASG00005036084) #7	HIVEP3 (ENSEASG00005001186) #8	ENSEASG00005036254	GUCA2B (ENSEASG00005001201) #9	ENSEASG00005023801 #10	FOXJ3 (ENSEASG00005001210) #11	RIMKLA (ENSEASG00005001217) #13	ZMYND12 (ENSEASG00005001220) #14	PPCS (ENSEASG00005001227) #15	ENSEASG00005038387	CCDC30 (ENSEASG00005001246) #17	PPIH (ENSEASG00005001269) #18	ENSEASG00005001276 #19	CLDN19 (ENSEASG00005001286) #20	P3H1 (ENSEASG00005001292) #21	ENSEASG00005029261 #22	ENSEASG00005001305 #23	SVBP (ENSEASG00005036382) #24	ERMAP (ENSEASG00005001324) #25	ZNF691 (ENSEASG00005001340) #26	SLC2A1 (ENSEASG00005001348) #27	ENSEASG00005025591 #28	ENSEASG00005001366 ##29	ENSEASG00005001374 ##29	ENSEASG00005001380 ##29	ENSEASG00005001382 #29	ENSEASG00005001384	ENSEASG00005035787 #31	ENSEASG00005001386 #30	ENSEASG00005027264 #31	ENSEASG00005001388 ##29
Horse	MODERN SPECIES	11	FOXO6 (ENSECAG00000002551)	ENSECAG00000058410	EDN2 (ENSECAG00000023173) #7	HIVEP3 (ENSECAG00000018490) #8	GUCA2B (ENSECAG00000018081) #9	GUCA2A (ENSECAG00000015312) #10	FOXJ3 (ENSECAG00000008665) #11	RIMKLA (ENSECAG00000005880) #13	PPCS (ENSECAG00000017987)	ZMYND12 (ENSECAG00000019887) #14	CCDC30 (ENSECAG00000010908) #17	PPIH (ENSECAG00000009890) #18	YBX1 (ENSECAG00000023592) #19	CLDN19 (ENSECAG00000021395) #20	P3H1 (ENSECAG00000022675) #21	C2H1orf50 (ENSECAG00000054421) #22	TMEM269 (ENSECAG00000020080) #23	SVBP (ENSECAG00000019655) #24	ERMAP (ENSECAG00000013102) #25	ENSECAG00000053183	ZNF691 (ENSECAG00000013086) #26	SLC2A1 (ENSECAG00000000303) #27	ENSECAG00000014951 #28	ENSECAG00000036863 ##29	ENSECAG00000060111 #31	CFAP144 (ENSECAG00000010988)	EBNA1BP2 (ENSECAG00000024179)	ENSECAG00000051385	CFAP57 (ENSECAG00000022802)	ENSECAG00000050555	TMEM125 (ENSECAG00000001068)
Artiodactyla	ANCESTRAL SPECIES		ENSGT00950000183053.A #7	ENSGT00940000157218.C #8	ENSGT00970000194001	ENSGT00940000154436.b #9	ENSGT00940000154436.a #10	ENSGT00940000160362 #11	ENSGT00390000014577.b #13	ENSGT00390000004248 #14	ENSGT00950000182834.C #15	ENSGT00390000007816 #17	ENSGT00700000105447	ENSGT00940000154721 #18	ENSGT00940000153341.b.p.a.a #19	ENSGT00940000158624 #20	ENSGT00940000158725 #21	ENSGT00390000003084 #22	ENSGT00940000154169.B #23	ENSGT00390000006113 #24	ENSGT00940000160531 #25	ENSGT00940000161958 #26	ENSGT00940000156792 #27	ENSGT00940000160928 #28	ENSGT01090000260044.A.a.b.a.b ##29	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.a ##29	ENSGT01090000260044.A.a.b.a.a.a.a.b ##29	ENSGT01090000260044.A.a.b.a.a.a.a.a.b #29	ENSGT01090000260044.A.a.b.a.a.a.b #30	ENSGT01090000260044.A.a.b.a.a.b #31	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.b ##29	ENSGT00390000006224	ENSGT00390000014984
Suina	ANCESTRAL SPECIES	27	ENSGT00940000161401	ENSGT00950000183053.A #7	ENSGT00940000157218.C #8	ENSGT00970000194001	ENSGT00940000154436.b #9	ENSGT00940000154436.a #10	ENSGT00940000160362 #11	ENSGT00390000014577.b #13	ENSGT00390000004248 #14	ENSGT00950000182834.C #15	ENSGT00390000007816 #17	ENSGT00940000154721 #18	ENSGT00940000153341.b.p.a.a #19	ENSGT00940000158624 #20	ENSGT00940000158725 #21	ENSGT00390000003084 #22	ENSGT00940000154169.B #23	ENSGT00390000006113 #24	ENSGT00940000160531 #25	ENSGT00940000161958 #26	ENSGT00940000156792 #27	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.a ##29	ENSGT01090000260044.A.a.b.a.a.a.a.b ##29	ENSGT01090000260044.A.a.b.a.a.a.a.a.b #29	ENSGT01090000260044.A.a.b.a.a.a.b #30	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.b ##29	ENSGT00390000006224	ENSGT00390000014984	ENSGT00620000088018.h	ENSGT00390000003015	ENSGT00510000048988
Chacoan peccary	MODERN SPECIES	54	FOXO6 (ENSCWAG00000011217)	EDN2 (ENSCWAG00000011186) #7	HIVEP3 (ENSCWAG00000011126) #8	ENSCWAG00000011100	GUCA2B (ENSCWAG00000011060) #9	GUCA2A (ENSCWAG00000011019) #10	FOXJ3 (ENSCWAG00000010849) #11	RIMKLA (ENSCWAG00000010781) #13	ZMYND12 (ENSCWAG00000010714) #14	PPCS (ENSCWAG00000010645) #15	ENSCWAG00000010546 #17	ENSCWAG00000010479	PPIH (ENSCWAG00000010368) #18	CLDN19 (ENSCWAG00000010218) #20	P3H1 (ENSCWAG00000010147) #21	C1orf50 (ENSCWAG00000010091) #22	ENSCWAG00000010066 #23	SVBP (ENSCWAG00000010035) #24	ERMAP (ENSCWAG00000009847) #25	ZNF691 (ENSCWAG00000009781) #26	SLC2A1 (ENSCWAG00000009728) #27	ENSCWAG00000009692 ##29	ENSCWAG00000009668 ##29	ENSCWAG00000009633 #29	ENSCWAG00000009599 #30	ENSCWAG00000009583 ##29	CFAP144 (ENSCWAG00000009545)	EBNA1BP2 (ENSCWAG00000009479)	CFAP57 (ENSCWAG00000009303)	TMEM125 (ENSCWAG00000009273)	C1orf210 (ENSCWAG00000009247)
Pig	MODERN SPECIES	14	SCMH1 (ENSSSCG00000003971)	FOXO6 (ENSSSCG00000035074)	EDN2 (ENSSSCG00000037856) #7	ENSSSCG00000061658	GUCA2B (ENSSSCG00000003970) #9	GUCA2A (ENSSSCG00000055523) #10	FOXJ3 (ENSSSCG00000023266) #11	RIMKLA (ENSSSCG00000055268) #13	ZMYND12 (ENSSSCG00000003967) #14	PPCS (ENSSSCG00000058636) #15	ENSSSCG00000003965 #17	PPIH (ENSSSCG00000003964) #18	ENSSSCG00000028485 #19	CLDN19 (ENSSSCG00000034921) #20	P3H1 (ENSSSCG00000023920) #21	ENSSSCG00000027374 #22	ENSSSCG00000039678 #23	ENSSSCG00000060526 #24	ERMAP (ENSSSCG00000021745) #25	ZNF691 (ENSSSCG00000040559) #26	SLC2A1 (ENSSSCG00000059879) #27	ENSSSCG00000039458 ##29	ENSSSCG00000032230 ##29	ENSSSCG00000003960 ##29	ENSSSCG00000003959 ##29	ENSSSCG00000003958 #29	ENSSSCG00000003957 #30	ENSSSCG00000003955 ##29	CFAP144 (ENSSSCG00000003954)	EBNA1BP2 (ENSSSCG00000030177)	CFAP57 (ENSSSCG00000023904)
Artiodactyla_a	ANCESTRAL SPECIES		ENSGT00950000183053.A #7	ENSGT00940000157218.C #8	ENSGT00970000194001	ENSGT00940000154436.b #9	ENSGT00940000154436.a #10	ENSGT00940000160362 #11	ENSGT00390000014577.b #13	ENSGT00390000004248 #14	ENSGT00950000182834.C #15	ENSGT00390000007816 #17	ENSGT00700000105447	ENSGT00940000154721 #18	ENSGT00940000153341.b.p.a.a #19	ENSGT00940000158624 #20	ENSGT00940000158725 #21	ENSGT00390000003084 #22	ENSGT00940000154169.B #23	ENSGT00390000006113 #24	ENSGT00940000160531 #25	ENSGT00940000161958 #26	ENSGT00940000156792 #27	ENSGT00940000160928 #28	ENSGT01090000260044.A.a.b.a.b ##29	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.a ##29	ENSGT01090000260044.A.a.b.a.a.a.a.b ##29	ENSGT01090000260044.A.a.b.a.a.a.a.a.b #29	ENSGT01090000260044.A.a.b.a.a.a.b #30	ENSGT01090000260044.A.a.b.a.a.b #31	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.b ##29	ENSGT00390000006224	ENSGT00390000014984
Camelidae	ANCESTRAL SPECIES	11	ENSGT00940000157999	ENSGT00940000161401	ENSGT00950000183053.A #7	ENSGT00940000157218.C #8	ENSGT00940000154436.b #9	ENSGT00940000154436.a #10	ENSGT00940000160362 #11	ENSGT00390000014577.b.i #13	ENSGT00390000004248 #14	ENSGT00950000182834.C #15	ENSGT00390000007816 #17	ENSGT00940000154721 #18	ENSGT00940000153341.b.p.a.a #19	ENSGT00940000158624 #20	ENSGT00940000158725 #21	ENSGT00390000003084 #22	ENSGT00940000154169.B #23	ENSGT00390000006113 #24	ENSGT00940000160531 #25	ENSGT00940000161958 #26	ENSGT00940000156792 #27	ENSGT00940000160928 #28	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.a ##29	ENSGT01090000260044.A.a.b.a.a.a.a.b ##29	ENSGT01090000260044.A.a.b.a.a.a.a.a.b #29	ENSGT00390000006224	ENSGT00390000014984	ENSGT00620000088018.h	ENSGT00390000003015	ENSGT00510000048988	ENSGT00940000157693
Alpaca	MODERN SPECIES	23															ENSVPAG00000011325 #21	C1orf50 (ENSVPAG00000011326) #22	SVBP (ENSVPAG00000011327) #24	ERMAP (ENSVPAG00000011329) #25	ZNF691 (ENSVPAG00000011330) #26
Arabian camel	MODERN SPECIES	4	FOXO6 (ENSCDRG00005015434)	EDN2 (ENSCDRG00005015453) #7	HIVEP3 (ENSCDRG00005015500) #8	ENSCDRG00005015546	GUCA2B (ENSCDRG00005015564) #9	GUCA2A (ENSCDRG00005015592) #10	FOXJ3 (ENSCDRG00005015630) #11	ENSCDRG00005015740 #13	ZMYND12 (ENSCDRG00005015787) #14	PPCS (ENSCDRG00005015813) #15	CCDC30 (ENSCDRG00005015907) #17	PPIH (ENSCDRG00005016482) #18	ENSCDRG00005016631 #19	CLDN19 (ENSCDRG00005016715) #20	P3H1 (ENSCDRG00005016774) #21	C1orf50 (ENSCDRG00005016859) #22	ENSCDRG00005016883 #23	SVBP (ENSCDRG00005016909) #24	ERMAP (ENSCDRG00005006655) #25	ZNF691 (ENSCDRG00005006794) #26	SLC2A1 (ENSCDRG00005006838) #27	ENSCDRG00005006921 #28	ENSCDRG00005007056 #30	ENSCDRG00005007096	ENSCDRG00005007141 ##29	ENSCDRG00005007187 ##29	ENSCDRG00005007195 #29	ENSCDRG00005007207	EBNA1BP2 (ENSCDRG00005007253)	CFAP57 (ENSCDRG00005007275)	TMEM125 (ENSCDRG00005007306)
Artiodactyla_b	ANCESTRAL SPECIES		ENSGT00940000157218.C #8	ENSGT00970000194001	ENSGT00940000154436.b #9	ENSGT00940000154436.a #10	ENSGT00940000160362 #11	ENSGT00390000014577.b #13	ENSGT00390000004248 #14	ENSGT00950000182834.C #15	ENSGT00390000007816 #17	ENSGT00700000105447	ENSGT00940000154721 #18	ENSGT00940000153341.b.p.a.b.b ##19	ENSGT00940000153341.b.p.a.a #19	ENSGT00940000158624 #20	ENSGT00940000158725 #21	ENSGT00390000003084 #22	ENSGT00940000154169.B #23	ENSGT00390000006113 #24	ENSGT00940000160531 #25	ENSGT00940000161958 #26	ENSGT00940000156792 #27	ENSGT00940000160928 #28	ENSGT01090000260044.A.a.b.a.b ##29	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.a ##29	ENSGT01090000260044.A.a.b.a.a.a.a.b ##29	ENSGT01090000260044.A.a.b.a.a.a.a.a.b #29	ENSGT01090000260044.A.a.b.a.a.a.b #30	ENSGT01090000260044.A.a.b.a.a.b #31	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.b ##29	ENSGT00390000006224	ENSGT00390000014984
Cetacea	ANCESTRAL SPECIES		ENSGT00950000183053.A #7	ENSGT00940000157218.C #8	ENSGT00940000154436.b #9	ENSGT00940000154436.a #10	ENSGT00940000160362 #11	ENSGT00390000014577.b #13	ENSGT00390000004248 #14	ENSGT00950000182834.C #15	ENSGT00390000007816 #17	ENSGT00940000167024 #16	ENSGT00940000154721.wb #18	ENSGT00940000153341.b.p.a.b.b ##19	ENSGT00940000153341.b.p.a.a #19	ENSGT00940000158624 #20	ENSGT00940000158725 #21	ENSGT00390000003084 #22	ENSGT00940000154169.B #23	ENSGT00390000006113 #24	ENSGT00940000160531 #25	ENSGT00940000161958 #26	ENSGT00940000156792 #27	ENSGT00940000160928 #28	ENSGT01090000260044.A.a.b.a.b ##29	ENSGT00390000006224	ENSGT00390000014984	ENSGT00620000088018.h	ENSGT00390000003015	ENSGT00510000048988	ENSGT00940000155028.q.a.d	ENSGT00940000157693	ENSGT00940000161225
Odontoceti	ANCESTRAL SPECIES		ENSGT00950000183053.A #7	ENSGT00940000157218.C #8	ENSGT00940000154436.b #9	ENSGT00940000154436.a #10	ENSGT00940000160362 #11	ENSGT00390000014577.b #13	ENSGT00390000004248 #14	ENSGT00950000182834.C #15	ENSGT00390000007816 #17	ENSGT00940000167024 #16	ENSGT00940000154721.wb #18	ENSGT00940000153341.b.p.a.b.b ##19	ENSGT00940000153341.b.p.a.a #19	ENSGT00940000158624 #20	ENSGT00940000158725 #21	ENSGT00390000003084 #22	ENSGT00940000154169.B #23	ENSGT00390000006113 #24	ENSGT00940000160531 #25	ENSGT00940000161958 #26	ENSGT00940000156792 #27	ENSGT00940000160928 #28	ENSGT01090000260044.A.a.b.a.b ##29	ENSGT00390000006224	ENSGT00390000014984	ENSGT00620000088018.h	ENSGT00390000003015	ENSGT00510000048988	ENSGT00940000155028.q.a.d	ENSGT00940000157693	ENSGT00940000161225
Odontoceti_a	ANCESTRAL SPECIES		ENSGT00950000183053.A #7	ENSGT00940000157218.C #8	ENSGT00940000154436.b #9	ENSGT00940000154436.a #10	ENSGT00940000160362 #11	ENSGT00390000014577.b #13	ENSGT00390000004248 #14	ENSGT00950000182834.C #15	ENSGT00390000007816 #17	ENSGT00940000167024 #16	ENSGT00940000154721.wb #18	ENSGT00940000153341.b.p.a.b.b ##19	ENSGT00940000153341.b.p.a.a #19	ENSGT00940000158624 #20	ENSGT00940000158725 #21	ENSGT00390000003084 #22	ENSGT00940000154169.B #23	ENSGT00390000006113 #24	ENSGT00940000160531 #25	ENSGT00940000161958 #26	ENSGT00940000156792 #27	ENSGT00940000160928 #28	ENSGT01090000260044.A.a.b.a.b ##29	ENSGT00390000006224	ENSGT00390000014984	ENSGT00620000088018.h	ENSGT00390000003015	ENSGT00510000048988	ENSGT00940000157693	ENSGT00940000161225	ENSGT00950000183104.A.a.a
Odontoceti_b	ANCESTRAL SPECIES		ENSGT00390000018145.xc.a.b	ENSGT00950000183053.A #7	ENSGT00940000157218.C #8	ENSGT00940000154436.b #9	ENSGT00940000154436.a #10	ENSGT00940000160362 #11	ENSGT00390000014577.b #13	ENSGT00390000004248 #14	ENSGT00950000182834.C #15	ENSGT00390000007816 #17	ENSGT00940000167024 #16	ENSGT00940000154721.wb #18	ENSGT00940000153341.b.p.a.b.b ##19	ENSGT00940000158624 #20	ENSGT00940000158725 #21	ENSGT00390000003084 #22	ENSGT00940000154169.B #23	ENSGT00390000006113 #24	ENSGT00940000161958 #26	ENSGT00940000156792 #27	ENSGT00940000160928 #28	ENSGT01090000260044.A.a.b.a.b ##29	ENSGT00390000006224	ENSGT00390000014984	ENSGT00620000088018.h	ENSGT00390000003015	ENSGT00510000048988	ENSGT00940000157693	ENSGT00940000161225	ENSGT00950000183104.A.a.a	ENSGT01050000244838.H.d
Monodontidae	ANCESTRAL SPECIES		ENSGT00390000018145.xc.a.b	ENSGT00950000183053.A #7	ENSGT00940000157218.C #8	ENSGT00940000154436.b #9	ENSGT00940000154436.a #10	ENSGT00940000160362 #11	ENSGT00390000014577.b #13	ENSGT00390000004248 #14	ENSGT00950000182834.C #15	ENSGT00390000007816 #17	ENSGT00940000167024 #16	ENSGT00940000154721.wb #18	ENSGT00940000153341.b.p.a.a #19	ENSGT00940000158624 #20	ENSGT00940000158725 #21	ENSGT00390000003084 #22	ENSGT00940000154169.B #23	ENSGT00390000006113 #24	ENSGT00940000161958 #26	ENSGT00940000156792 #27	ENSGT00940000160928 #28	ENSGT01090000260044.A.a.b.a.b ##29	ENSGT00390000006224	ENSGT00390000014984	ENSGT00620000088018.h	ENSGT00390000003015	ENSGT00510000048988	ENSGT00940000157693	ENSGT00940000161225	ENSGT00950000183104.A.a.a	ENSGT01050000244838.H.d
Narwhal	MODERN SPECIES	304	FOXO6 (ENSMMNG00015008018)	ENSMMNG00015008007	EDN2 (ENSMMNG00015007991) #7	HIVEP3 (ENSMMNG00015007974) #8	GUCA2B (ENSMMNG00015007941) #9	GUCA2A (ENSMMNG00015007926) #10	FOXJ3 (ENSMMNG00015007886) #11	RIMKLA (ENSMMNG00015007858) #13	ZMYND12 (ENSMMNG00015007834) #14	PPCS (ENSMMNG00015007805) #15	CCDC30 (ENSMMNG00015007748) #17	PPIH (ENSMMNG00015007690) #18	YBX1 (ENSMMNG00015007648) ##19	CLDN19 (ENSMMNG00015007624) #20	P3H1 (ENSMMNG00015007575) #21	C1orf50 (ENSMMNG00015007545) #22	TMEM269 (ENSMMNG00015007521)	SVBP (ENSMMNG00015007502) #24	ZNF691 (ENSMMNG00015007480) #26	ENSMMNG00015007458	SLC2A1 (ENSMMNG00015007427) #27	ENSMMNG00015007379 #28	CFAP144 (ENSMMNG00015007355)	EBNA1BP2 (ENSMMNG00015007327)	CFAP57 (ENSMMNG00015007260)	TMEM125 (ENSMMNG00015007230)	C1orf210 (ENSMMNG00015007209)	TIE1 (ENSMMNG00015007163)	MPL (ENSMMNG00015007116)	CDC20 (ENSMMNG00015007090)	ELOVL1 (ENSMMNG00015007061)
Beluga whale	MODERN SPECIES	74	EDN2 (ENSDLEG00000021581) #7	HIVEP3 (ENSDLEG00000021584) #8	ENSDLEG00000021586	GUCA2B (ENSDLEG00000021590) #9	GUCA2A (ENSDLEG00000021593) #10	FOXJ3 (ENSDLEG00000021596) #11	RIMKLA (ENSDLEG00000021602) #13	ZMYND12 (ENSDLEG00000021604) #14	PPCS (ENSDLEG00000021607) #15	ENSDLEG00000021610 #17	ENSDLEG00000021612 #16	PPIH (ENSDLEG00000021616) #18	ENSDLEG00000021624 #19	CLDN19 (ENSDLEG00000021627) #20	P3H1 (ENSDLEG00000021628) #21	CUNH1orf50 (ENSDLEG00000021632) #22	TMEM269 (ENSDLEG00000021634) #23	SVBP (ENSDLEG00000021636) #24	ENSDLEG00000021637	ZNF691 (ENSDLEG00000021639) #26	ENSDLEG00000021641	SLC2A1 (ENSDLEG00000021645) #27	ENSDLEG00000021652 #28	ENSDLEG00000021653 ##29	CFAP144 (ENSDLEG00000021655)	EBNA1BP2 (ENSDLEG00000021657)	CFAP57 (ENSDLEG00000021663)	TMEM125 (ENSDLEG00000021673)	CUNH1orf210 (ENSDLEG00000021675)	TIE1 (ENSDLEG00000021678)	MPL (ENSDLEG00000021691)
Vaquita	MODERN SPECIES		EDN2 (ENSPSNG00000001170) #7	HIVEP3 (ENSPSNG00000001194) #8	ENSPSNG00000001210	ENSPSNG00000001228	GUCA2B (ENSPSNG00000001245) #9	GUCA2A (ENSPSNG00000001265) #10	FOXJ3 (ENSPSNG00000001302) #11	RIMKLA (ENSPSNG00000001330) #13	ZMYND12 (ENSPSNG00000001355) #14	PPCS (ENSPSNG00000001382) #15	CCDC30 (ENSPSNG00000001449) #17	PPIH (ENSPSNG00000001568) #18	ENSPSNG00000001610 ##19	CLDN19 (ENSPSNG00000001633) #20	P3H1 (ENSPSNG00000001672) #21	C1orf50 (ENSPSNG00000001717) #22	TMEM269 (ENSPSNG00000001731)	SVBP (ENSPSNG00000001745) #24	ZNF691 (ENSPSNG00000001763) #26	ENSPSNG00000001793	SLC2A1 (ENSPSNG00000001817) #27	ENSPSNG00000001857 #28	ENSPSNG00000001980 ##29	CFAP144 (ENSPSNG00000002097)	EBNA1BP2 (ENSPSNG00000002122)	CFAP57 (ENSPSNG00000002159)	TMEM125 (ENSPSNG00000002216)	C1orf210 (ENSPSNG00000002229)	TIE1 (ENSPSNG00000002270)	MPL (ENSPSNG00000002348)	CDC20 (ENSPSNG00000002393)
Dolphin	MODERN SPECIES	6588																C1orf50 (ENSTTRG00000014537) #22	SVBP (ENSTTRG00000014536) #24	ENSTTRG00000014535 #25
Sperm whale	MODERN SPECIES	14	SCMH1 (ENSPCTG00005000419)	EDN2 (ENSPCTG00005000271) #7	ENSPCTG00005000247	ENSPCTG00005000219	GUCA2B (ENSPCTG00005000211) #9	GUCA2A (ENSPCTG00005000204) #10	FOXJ3 (ENSPCTG00005020773) #11	RIMKLA (ENSPCTG00005020737) #13	ZMYND12 (ENSPCTG00005020695) #14	PPCS (ENSPCTG00005020632) #15	CCDC30 (ENSPCTG00005020273) #17	PPIH (ENSPCTG00005020154) #18	YBX1 (ENSPCTG00005020123) ##19	CLDN19 (ENSPCTG00005020001) #20	P3H1 (ENSPCTG00005019953) #21	C1orf50 (ENSPCTG00005019888) #22	ENSPCTG00005019858 #23	SVBP (ENSPCTG00005019838) #24	ZNF691 (ENSPCTG00005019753) #26	ENSPCTG00005019688	SLC2A1 (ENSPCTG00005019653) #27	ENSPCTG00005019590 #28	ENSPCTG00005019515 ##29	FAM183A (ENSPCTG00005019482)	EBNA1BP2 (ENSPCTG00005019454)	CFAP57 (ENSPCTG00005019022)	TMEM125 (ENSPCTG00005019000)	C3H1orf210 (ENSPCTG00005018962)	ENSPCTG00005018926	TIE1 (ENSPCTG00005018633)	MPL (ENSPCTG00005018368)
Blue whale	MODERN SPECIES		EDN2 (ENSBMSG00010010097) #7	HIVEP3 (ENSBMSG00010010109) #8	ENSBMSG00010010121	ENSBMSG00010010128	GUCA2B (ENSBMSG00010010144) #9	GUCA2A (ENSBMSG00010010152) #10	FOXJ3 (ENSBMSG00010010186) #11	RIMKLA (ENSBMSG00010010236) #13	ZMYND12 (ENSBMSG00010010252) #14	PPCS (ENSBMSG00010010269) #15	CCDC30 (ENSBMSG00010010308) #17	ENSBMSG00010010377 #18	YBX1 (ENSBMSG00010010405) ##19	CLDN19 (ENSBMSG00010010425) #20	P3H1 (ENSBMSG00010010456) #21	C1orf50 (ENSBMSG00010010485) #22	TMEM269 (ENSBMSG00010010497)	SVBP (ENSBMSG00010010511) #24	ZNF691 (ENSBMSG00010010530) #26	ENSBMSG00010010544	SLC2A1 (ENSBMSG00010010558) #27	ENSBMSG00010010569 ##29	CFAP144 (ENSBMSG00010010583)	EBNA1BP2 (ENSBMSG00010010600)	CFAP57 (ENSBMSG00010010615)	TMEM125 (ENSBMSG00010010677)	C1orf210 (ENSBMSG00010010682)	TIE1 (ENSBMSG00010010706)	MPL (ENSBMSG00010010732)	ENSBMSG00010010760	ELOVL1 (ENSBMSG00010010782)
Pecora	ANCESTRAL SPECIES	2	ENSGT00940000157218.C #8	ENSGT00970000194001	ENSGT00940000154436.b #9	ENSGT00940000154436.a #10	ENSGT00940000160362 #11	ENSGT00390000014577.b #13	ENSGT00390000004248 #14	ENSGT00950000182834.C #15	ENSGT00390000007816 #17	ENSGT00940000154721.yb #18	ENSGT00700000105447	ENSGT00940000154721.xb.a #18	ENSGT00940000153341.b.p.a.a #19	ENSGT00940000158624 #20	ENSGT00940000158725 #21	ENSGT00390000003084 #22	ENSGT00940000154169.B #23	ENSGT00390000006113 #24	ENSGT00940000160531 #25	ENSGT00940000161958 #26	ENSGT00940000156792 #27	ENSGT00940000160928 #28	ENSGT01090000260044.A.a.b.a.b.e.b ##29	ENSGT01090000260044.A.a.b.a.b.f ##29	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.a ##29	ENSGT01090000260044.A.a.b.a.a.a.a.b ##29	ENSGT01090000260044.A.a.b.a.a.a.a.a.b #29	ENSGT01090000260044.A.a.b.a.a.a.b #30	ENSGT01090000260044.A.a.b.a.a.b #31	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.b ##29	ENSGT00390000006224
Yarkand deer	MODERN SPECIES	12	GUCA2B (ENSCHYG00000026652) #9	GUCA2A (ENSCHYG00000026642) #10	FOXJ3 (ENSCHYG00000026583) #11	RIMKLA (ENSCHYG00000026570) #13	ZMYND12 (ENSCHYG00000026553) #14	ENSCHYG00000026542	ENSCHYG00000026536	ENSCHYG00000026530	ENSCHYG00000026495 #17	ENSCHYG00000026477	ENSCHYG00000026472	ENSCHYG00000026459 #18	ENSCHYG00000026406	CLDN19 (ENSCHYG00000026379) #20	P3H1 (ENSCHYG00000026274) #21	C1orf50 (ENSCHYG00000026253) #22	ENSCHYG00000026241 #23	ENSCHYG00000026229 #24	ZNF691 (ENSCHYG00000026220) #26	SLC2A1 (ENSCHYG00000026195) #27	ENSCHYG00000026156 #28	ENSCHYG00000026141 ##29	ENSCHYG00000026119 ##29	ENSCHYG00000026091 ##29	ENSCHYG00000026082 #30	ENSCHYG00000026072 ##29	CFAP144 (ENSCHYG00000026054)	EBNA1BP2 (ENSCHYG00000026041)	CFAP57 (ENSCHYG00000025802)	TMEM125 (ENSCHYG00000025774)	C1orf210 (ENSCHYG00000025765)
Percora_a	ANCESTRAL SPECIES	1	ENSGT00940000157218.C #8	ENSGT00970000194001	ENSGT00940000154436.b #9	ENSGT00940000154436.a #10	ENSGT00940000160362 #11	ENSGT00390000014577.b #13	ENSGT00390000004248 #14	ENSGT00950000182834.C #15	ENSGT00390000007816 #17	ENSGT00940000154721.yb #18	ENSGT00700000105447	ENSGT00940000154721.xb.a #18	ENSGT00940000153341.b.p.a.a #19	ENSGT00940000158624 #20	ENSGT00940000158725 #21	ENSGT00390000003084 #22	ENSGT00940000154169.B #23	ENSGT00390000006113 #24	ENSGT00940000160531 #25	ENSGT00940000161958 #26	ENSGT00940000156792 #27	ENSGT00940000160928 #28	ENSGT01090000260044.A.a.b.a.b.e.b ##29	ENSGT01090000260044.A.a.b.a.b.f.a ##29	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.a ##29	ENSGT01090000260044.A.a.b.a.a.a.a.b ##29	ENSGT01090000260044.A.a.b.a.a.a.a.a.b #29	ENSGT01090000260044.A.a.b.a.a.a.b #30	ENSGT01090000260044.A.a.b.a.a.b #31	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.b ##29	ENSGT00390000006224
Siberian musk deer	MODERN SPECIES	341	FOXO6 (ENSMMSG00000004411)	EDN2 (ENSMMSG00000004392) #7	HIVEP3 (ENSMMSG00000004366) #8	ENSMMSG00000004347	GUCA2B (ENSMMSG00000004328) #9	GUCA2A (ENSMMSG00000012152) #10	FOXJ3 (ENSMMSG00000012062) #11	ENSMMSG00000012015 #13	ZMYND12 (ENSMMSG00000011979) #14	PPCS (ENSMMSG00000011950) #15	CCDC30 (ENSMMSG00000011727) #17	ENSMMSG00000011645 #18	ENSMMSG00000011587 #19	CLDN19 (ENSMMSG00000011553) #20	P3H1 (ENSMMSG00000011524) #21	C1orf50 (ENSMMSG00000011500) #22	TMEM269 (ENSMMSG00000011462)	SVBP (ENSMMSG00000011448) #24	ZNF691 (ENSMMSG00000011438) #26	SLC2A1 (ENSMMSG00000011409) #27	ENSMMSG00000011317 #28	ENSMMSG00000011289 ##29	ENSMMSG00000011280 ##29	ENSMMSG00000011250 ##29	ENSMMSG00000011215 ##29	ENSMMSG00000011203 ##29	ENSMMSG00000011188 #29	ENSMMSG00000011179 #30	ENSMMSG00000011165 #31	CFAP144 (ENSMMSG00000011143)	EBNA1BP2 (ENSMMSG00000011120)
Bovidae	ANCESTRAL SPECIES	1	ENSGT00970000194001	ENSGT00940000154436.b #9	ENSGT00940000154436.a #10	ENSGT00940000160362 #11	ENSGT00390000014577.b #13	ENSGT00390000004248 #14	ENSGT00950000182834.C #15	ENSGT00390000007816 #17	ENSGT00940000154721.yb #18	ENSGT00700000105447	ENSGT00940000154721.xb.a #18	ENSGT00940000153341.b.p.a.b.b ##19	ENSGT00940000153341.b.p.a.a #19	ENSGT00940000158624 #20	ENSGT00940000158725 #21	ENSGT00390000003084 #22	ENSGT00940000154169.B #23	ENSGT00390000006113 #24	ENSGT00940000160531 #25	ENSGT00940000161958 #26	ENSGT00940000156792 #27	ENSGT00940000160928 #28	ENSGT01090000260044.A.a.b.a.b.f.b ##29	ENSGT01090000260044.A.a.b.a.b.e.b ##29	ENSGT01090000260044.A.a.b.a.b.f.a ##29	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.a ##29	ENSGT01090000260044.A.a.b.a.a.a.a.b ##29	ENSGT01090000260044.A.a.b.a.a.a.a.a.b #29	ENSGT01090000260044.A.a.b.a.a.a.b #30	ENSGT01090000260044.A.a.b.a.a.b #31	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.b ##29
Bovinae	ANCESTRAL SPECIES	1	ENSGT00940000154436.a #10	ENSGT00940000160362 #11	ENSGT00390000014577.b #13	ENSGT00390000004248 #14	ENSGT00950000182834.C #15	ENSGT00390000000654	ENSGT00940000167024 #16	ENSGT00940000153342.b.i.a.b	ENSGT00390000007816 #17	ENSGT00940000154721.yb #18	ENSGT00700000105447	ENSGT00940000154721.xb.a #18	ENSGT00940000153341.b.p.a.a #19	ENSGT00940000158624 #20	ENSGT00940000158725 #21	ENSGT00390000003084 #22	ENSGT00940000154169.B #23	ENSGT00390000006113 #24	ENSGT00940000160531 #25	ENSGT00940000161958 #26	ENSGT00940000156792 #27	ENSGT00940000160928 #28	ENSGT01090000260044.A.a.b.a.b.f.b ##29	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.a ##29	ENSGT01090000260044.A.a.b.a.a.a.a.b ##29	ENSGT01090000260044.A.a.b.a.a.a.a.a.b #29	ENSGT01090000260044.A.a.b.a.b.f.a ##29	ENSGT01090000260044.A.a.b.a.a.a.b #30	ENSGT01090000260044.A.a.b.a.a.b #31	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.b ##29	ENSGT00390000006224
Bos	ANCESTRAL SPECIES		ENSGT00940000154436.a #10	ENSGT00940000160362 #11	ENSGT00390000014577.b #13	ENSGT00390000004248 #14	ENSGT00950000182834.C #15	ENSGT00390000000654	ENSGT00940000167024 #16	ENSGT00940000153342.b.i.a.b	ENSGT00390000007816 #17	ENSGT00940000154721.yb #18	ENSGT00700000105447	ENSGT00940000154721.xb.a #18	ENSGT00940000153341.b.p.a.a #19	ENSGT00940000158624 #20	ENSGT00940000158725 #21	ENSGT00390000003084 #22	ENSGT00940000154169.B #23	ENSGT00390000006113 #24	ENSGT00940000160531.l #25	ENSGT00940000161958 #26	ENSGT00940000156792 #27	ENSGT00940000160928 #28	ENSGT01090000260044.A.a.b.a.b.f.b ##29	ENSGT01090000260044.A.a.b.a.b.f.a ##29	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.a ##29	ENSGT01090000260044.A.a.b.a.a.a.a.b ##29	ENSGT01090000260044.A.a.b.a.a.a.a.a.b #29	ENSGT01090000260044.A.a.b.a.a.b.a #31	ENSGT01090000260044.A.a.b.a.a.b.b #31	ENSGT01090000260044.A.a.b.a.a.a.b #30	ENSGT01100000263497.E.b.f.b.a
Bos_a	ANCESTRAL SPECIES	1	ENSGT00970000194001	ENSGT00940000154436.b #9	ENSGT00940000154436.a #10	ENSGT00940000160362 #11	ENSGT00390000014577.b #13	ENSGT00390000004248 #14	ENSGT00950000182834.C #15	ENSGT00390000000654	ENSGT00940000167024 #16	ENSGT00940000153342.b.i.a.b	ENSGT00390000007816 #17	ENSGT00940000154721.xb.a #18	ENSGT00940000153341.b.p.a.a #19	ENSGT00940000158624 #20	ENSGT00940000158725 #21	ENSGT00390000003084 #22	ENSGT00940000154169.B #23	ENSGT00390000006113 #24	ENSGT00940000160531.l #25	ENSGT00940000161958 #26	ENSGT00940000156792 #27	ENSGT00940000160928 #28	ENSGT01090000260044.A.a.b.a.b.f.b ##29	ENSGT01090000260044.A.a.b.a.b.f.a ##29	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.a ##29	ENSGT01090000260044.A.a.b.a.a.a.a.b ##29	ENSGT01090000260044.A.a.b.a.a.a.a.a.b #29	ENSGT01090000260044.A.a.b.a.a.b.a #31	ENSGT01090000260044.A.a.b.a.a.a.b #30	ENSGT01090000260044.A.a.b.a.a.b.b #31	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.b ##29
Domestic yak	MODERN SPECIES	22	ENSBGRG00000014045	ENSBGRG00000014026	ENSBGRG00000013948 #9	GUCA2A (ENSBGRG00000013890) #10	FOXJ3 (ENSBGRG00000013409) #11	RIMKLA (ENSBGRG00000013342) #13	ZMYND12 (ENSBGRG00000013236) #14	PPCS (ENSBGRG00000013144) #15	ENSBGRG00000013002 #16	ENSBGRG00000012949	ENSBGRG00000012821 #17	ENSBGRG00000012681 #18	ENSBGRG00000012514	CLDN19 (ENSBGRG00000012480) #20	P3H1 (ENSBGRG00000012203) #21	C1orf50 (ENSBGRG00000012101) #22	ENSBGRG00000012038 #23	SVBP (ENSBGRG00000011987) #24	ENSBGRG00000011933 #25	ZNF691 (ENSBGRG00000011897) #26	SLC2A1 (ENSBGRG00000011665) #27	ENSBGRG00000011573 #28	ENSBGRG00000011491 ##29	ENSBGRG00000011456 ##29	ENSBGRG00000011449 #29	ENSBGRG00000011420 #31	ENSBGRG00000011360 #30	ENSBGRG00000011337	ENSBGRG00000011307 #31	ENSBGRG00000011267 ##29	CFAP144 (ENSBGRG00000011192)
Wild yak	MODERN SPECIES	1280												ENSBMUG00000007203 #18	ENSBMUG00000007078 #19	CLDN19 (ENSBMUG00000007045) #20	P3H1 (ENSBMUG00000007025) #21	C1orf50 (ENSBMUG00000007012) #22	ENSBMUG00000007003 #23	SVBP (ENSBMUG00000006993) #24	ZNF691 (ENSBMUG00000006983) #26	SLC2A1 (ENSBMUG00000006972) #27
Bos_b	ANCESTRAL SPECIES	1	ENSGT00940000154436.b #9	ENSGT00940000154436.a #10	ENSGT00940000160362 #11	ENSGT00390000014577.b #13	ENSGT00390000004248 #14	ENSGT00950000182834.C #15	ENSGT00940000167024 #16	ENSGT00940000153342.b.i.a.b	ENSGT00390000007816 #17	ENSGT00940000154721.yb #18	ENSGT00700000105447	ENSGT00940000154721.xb.a #18	ENSGT00940000153341.b.p.a.b.b ##19	ENSGT00940000158624 #20	ENSGT00940000158725 #21	ENSGT00390000003084 #22	ENSGT00940000154169.B #23	ENSGT00390000006113 #24	ENSGT00940000160531.l #25	ENSGT00940000161958 #26	ENSGT00940000156792 #27	ENSGT00940000160928 #28	ENSGT01090000260044.A.a.b.a.b.f.b ##29	ENSGT01090000260044.A.a.b.a.b.f.a ##29	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.a ##29	ENSGT01090000260044.A.a.b.a.a.a.a.b ##29	ENSGT01090000260044.A.a.b.a.a.a.a.a.b #29	ENSGT01090000260044.A.a.b.a.a.a.b #30	ENSGT01090000260044.A.a.b.a.a.b.a #31	ENSGT01100000263497.E.b.f.b.a	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.b ##29
Cow	MODERN SPECIES	22	EDN2 (ENSBTAG00000021434) #7	HIVEP3 (ENSBTAG00000020745) #8	GUCA2B (ENSBTAG00000007194) #9	GUCA2A (ENSBTAG00000007195) #10	FOXJ3 (ENSBTAG00000015887) #11	RIMKLA (ENSBTAG00000017502) #13	ZMYND12 (ENSBTAG00000012979) #14	PPCS (ENSBTAG00000012982) #15	ENSBTAG00000052771	CCDC30 (ENSBTAG00000004585) #17	ENSBTAG00000050906	PPIH (ENSBTAG00000004590) #18	YBX1 (ENSBTAG00000017368) ##19	CLDN19 (ENSBTAG00000017381) #20	P3H1 (ENSBTAG00000017382) #21	C3H1orf50 (ENSBTAG00000017386) #22	SVBP (ENSBTAG00000017388) #24	TMEM269 (ENSBTAG00000017387) #25	ZNF691 (ENSBTAG00000016028) #26	SLC2A1 (ENSBTAG00000009617) #27	ENSBTAG00000012414 #28	OR13P16B (ENSBTAG00000048721) ##29	OR13P8 (ENSBTAG00000037770) ##29	OR10AK7 (ENSBTAG00000037810) ##29	OR13P4 (ENSBTAG00000001397) #30	OR13P11 (ENSBTAG00000053196) #31	OR13P2 (ENSBTAG00000048444) #31	ENSBTAG00000051805 ##29	FAM183A (ENSBTAG00000037555)	EBNA1BP2 (ENSBTAG00000021544)	CFAP57 (ENSBTAG00000021547)
Hybrid Bos Indicus	MODERN SPECIES	22	ENSBIXG00005029448	GUCA2B (ENSBIXG00005029429) #9	ENSBIXG00005029424 #10	FOXJ3 (ENSBIXG00005029367) #11	RIMKLA (ENSBIXG00005029322) #13	ZMYND12 (ENSBIXG00005029316) #14	PPCS (ENSBIXG00005029303) #15	ENSBIXG00005029286 #16	ENSBIXG00005007856	ENSBIXG00005007865 #17	ENSBIXG00005007879	ENSBIXG00005007897 #18	YBX1 (ENSBIXG00005007911) ##19	CLDN19 (ENSBIXG00005007924) #20	P3H1 (ENSBIXG00005007944) #21	C1orf50 (ENSBIXG00005007953) #22	ENSBIXG00005000043 #23	ENSBIXG00005000066	ENSBIXG00005008000 #25	ZNF691 (ENSBIXG00005008018) #26	SLC2A1 (ENSBIXG00005008046) #27	ENSBIXG00005000102	ENSBIXG00005008058	ENSBIXG00005008067	ENSBIXG00005008087 #28	ENSBIXG00005008104 ##29	ENSBIXG00005008124 ##29	ENSBIXG00005008138 ##29	ENSBIXG00005008149 ##29	ENSBIXG00005008162 #29	ENSBIXG00005000129
American bison	MODERN SPECIES	3342	HIVEP3 (ENSBBBG00000001537) #8	ENSBBBG00000009514	GUCA2B (ENSBBBG00000009516) #9	GUCA2A (ENSBBBG00000009517) #10	FOXJ3 (ENSBBBG00000009523) #11	RIMKLA (ENSBBBG00000001542) #13	ZMYND12 (ENSBBBG00000009529) #14	PPCS (ENSBBBG00000009532) #15	ENSBBBG00000007694 #16	ENSBBBG00000001545	ENSBBBG00000009540 #17	ENSBBBG00000009548 #18	ENSBBBG00000009552 #19	CLDN19 (ENSBBBG00000009558) #20	P3H1 (ENSBBBG00000009562) #21	C1orf50 (ENSBBBG00000009566) #22	TMEM269 (ENSBBBG00000009568)	SVBP (ENSBBBG00000001549) #24	ZNF691 (ENSBBBG00000009575) #26	SLC2A1 (ENSBBBG00000009579) #27	ENSBBBG00000009582 #28	ENSBBBG00000009587 ##29	ENSBBBG00000009590 ##29	ENSBBBG00000009592 ##29	ENSBBBG00000001552 #29	ENSBBBG00000009600 ##29	ENSBBBG00000009601 #30	ENSBBBG00000009604	ENSBBBG00000009607 ##29	CFAP144 (ENSBBBG00000009608)	EBNA1BP2 (ENSBBBG00000009613)
Caprinae	ANCESTRAL SPECIES	2	ENSGT00940000157999.b	ENSGT00940000161401	ENSGT00950000183053.A #7	ENSGT00940000157218.C #8	ENSGT00940000154436.b #9	ENSGT00940000154436.a #10	ENSGT00940000160362 #11	ENSGT00390000014577.b #13	ENSGT00390000004248 #14	ENSGT00950000182834.C #15	ENSGT00390000007816 #17	ENSGT00940000154721.xb.a #18	ENSGT00940000153341.b.p.a.b.b.f ##19	ENSGT00940000158624 #20	ENSGT00940000158725 #21	ENSGT00390000003084 #22	ENSGT00940000154169.B #23	ENSGT00390000006113 #24	ENSGT00940000160531 #25	ENSGT00940000161958 #26	ENSGT00940000156792 #27	ENSGT00940000160928 #28	ENSGT01090000260044.A.a.b.a.b.e.b ##29	ENSGT01090000260044.A.a.b.a.b.f.a ##29	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.a ##29	ENSGT01090000260044.A.a.b.a.a.a.a.b ##29	ENSGT01090000260044.A.a.b.a.a.a.a.a.b #29	ENSGT01090000260044.A.a.b.a.a.a.b #30	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.b ##29	ENSGT00390000006224	ENSGT00390000014984
Goat	MODERN SPECIES	22	FOXO6 (ENSCHIG00000018218)	EDN2 (ENSCHIG00000024063) #7	HIVEP3 (ENSCHIG00000011517) #8	ENSCHIG00000012856	GUCA2B (ENSCHIG00000019738) #9	GUCA2A (ENSCHIG00000005275) #10	FOXJ3 (ENSCHIG00000021942) #11	RIMKLA (ENSCHIG00000015404) #13	ZMYND12 (ENSCHIG00000007728) #14	PPCS (ENSCHIG00000022863) #15	CCDC30 (ENSCHIG00000018207) #17	ENSCHIG00000007905 #18	ENSCHIG00000014169 ##19	CLDN19 (ENSCHIG00000017870) #20	P3H1 (ENSCHIG00000008788) #21	C1orf50 (ENSCHIG00000015103) #22	ENSCHIG00000017910 #23	SVBP (ENSCHIG00000008164) #24	ENSCHIG00000013284	ERMAP (ENSCHIG00000013586) #25	ZNF691 (ENSCHIG00000012591) #26	ENSCHIG00000000575	SLC2A1 (ENSCHIG00000015523) #27	ENSCHIG00000020869 #28	ENSCHIG00000023252	ENSCHIG00000012428 ##29	ENSCHIG00000008088 ##29	ENSCHIG00000023263 ##29	ENSCHIG00000017587 ##29	ENSCHIG00000018185 #29	ENSCHIG00000008479 #30
Rambouillet Sheep	DUPLICATION
Rambouillet Sheep	MODERN SPECIES		CTPS1 (ENSOARG00020000058)	SLFNL1 (ENSOARG00020000061)	SCMH1 (ENSOARG00020000067)	EDN2 (ENSOARG00020000081) #7	HIVEP3 (ENSOARG00020000082) #8	GUCA2B (ENSOARG00020000089) #9	GUCA2A (ENSOARG00020000095) #10	FOXJ3 (ENSOARG00020000103) #11	RIMKLA (ENSOARG00020000124) #13	ZMYND12 (ENSOARG00020000132) #14	PPCS (ENSOARG00020000145) #15	PPIH (ENSOARG00020000274) #18	ENSOARG00020000296 ##19	CLDN19 (ENSOARG00020000325) #20	P3H1 (ENSOARG00020000368) #21	ENSOARG00020000393 #22	TMEM269 (ENSOARG00020000403)	SVBP (ENSOARG00020000415) #24	ZNF691 (ENSOARG00020000426) #26	SLC2A1 (ENSOARG00020000445) #27	ENSOARG00020000505 #28	ENSOARG00020000545 ##29	ENSOARG00020000553 ##29	ENSOARG00020000560 ##29	ENSOARG00020000608 ##29	ENSOARG00020000619 #29	ENSOARG00020000631 #30	ENSOARG00020000636 ##29	CFAP144 (ENSOARG00020000642)	EBNA1BP2 (ENSOARG00020000671)	CFAP57 (ENSOARG00020000692)
Rambouillet Sheep	MODERN SPECIES		ZSWIM5 (ENSOARG00020003848)	ENSOARG00020000037	HPDL (ENSOARG00020000043)	MUTYH (ENSOARG00020000051)	TOE1 (ENSOARG00020000052)	TESK2 (ENSOARG00020000085)	ENSOARG00020000128	MMACHC (ENSOARG00020000138)	PRDX1 (ENSOARG00020000156)	AKR1A1 (ENSOARG00020000189)	ENSOARG00020000265	CCDC17 (ENSOARG00020000364)	GPBP1L1 (ENSOARG00020000433)	TMEM69 (ENSOARG00020000462)	IPP (ENSOARG00020000478)	ENSOARG00020000500 #22	MAST2 (ENSOARG00020000575)	PIK3R3 (ENSOARG00020000796)	P3R3URF (ENSOARG00020000858)	TSPAN1 (ENSOARG00020000865)	POMGNT1 (ENSOARG00020000885)	LURAP1 (ENSOARG00020000928)	RAD54L (ENSOARG00020000936)	LRRC41 (ENSOARG00020000971)	UQCRH (ENSOARG00020000996)	NSUN4 (ENSOARG00020001022)	ENSOARG00020001036	FAAH (ENSOARG00020001048)	ENSOARG00020001062	DMBX1 (ENSOARG00020001077)	TMEM275 (ENSOARG00020001085)
Eulipotyphla	ANCESTRAL SPECIES	1375															ENSGT00940000158725 #21	ENSGT00390000003084 #22
Hedgehog	DUPLICATION
Hedgehog	DUPLICATION
Hedgehog	MODERN SPECIES	10376																ENSEEUG00000008640 #22
Hedgehog	MODERN SPECIES	10690																ENSEEUG00000009791 #22
Hedgehog	MODERN SPECIES	1899															P3H1 (ENSEEUG00000014999) #21	ENSEEUG00000015112 #22