Artiodactyla_a	ANCESTRAL SPECIES		ENSGT00950000183053.A	ENSGT00940000157218.C	ENSGT00970000194001	ENSGT00940000154436.b #9	ENSGT00940000154436.a #10	ENSGT00940000160362 #11	ENSGT00390000014577.b #12	ENSGT00390000004248 #13	ENSGT00950000182834.C #14	ENSGT00390000007816 #17	ENSGT00700000105447	ENSGT00940000154721 #18	ENSGT00940000153341.b.p.a.a	ENSGT00940000158624 #20	ENSGT00940000158725 #21	ENSGT00390000003084 #22	ENSGT00940000154169.B #23	ENSGT00390000006113 #24	ENSGT00940000160531 #25	ENSGT00940000161958 #26	ENSGT00940000156792 #27	ENSGT00940000160928 #28	ENSGT01090000260044.A.a.b.a.b ##29	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.a #29	ENSGT01090000260044.A.a.b.a.a.a.a.b #30	ENSGT01090000260044.A.a.b.a.a.a.a.a.b #31	ENSGT01090000260044.A.a.b.a.a.a.b #33	ENSGT01090000260044.A.a.b.a.a.b #32	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.b #36	ENSGT00390000006224 #37	ENSGT00390000014984
Artiodactyla_b	ANCESTRAL SPECIES		ENSGT00940000157218.C	ENSGT00970000194001	ENSGT00940000154436.b #9	ENSGT00940000154436.a #10	ENSGT00940000160362 #11	ENSGT00390000014577.b #12	ENSGT00390000004248 #13	ENSGT00950000182834.C #14	ENSGT00390000007816 #17	ENSGT00700000105447	ENSGT00940000154721 #18	ENSGT00940000153341.b.p.a.b.b	ENSGT00940000153341.b.p.a.a	ENSGT00940000158624 #20	ENSGT00940000158725 #21	ENSGT00390000003084 #22	ENSGT00940000154169.B #23	ENSGT00390000006113 #24	ENSGT00940000160531 #25	ENSGT00940000161958 #26	ENSGT00940000156792 #27	ENSGT00940000160928 #28	ENSGT01090000260044.A.a.b.a.b ##29	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.a #29	ENSGT01090000260044.A.a.b.a.a.a.a.b #30	ENSGT01090000260044.A.a.b.a.a.a.a.a.b #31	ENSGT01090000260044.A.a.b.a.a.a.b #33	ENSGT01090000260044.A.a.b.a.a.b #32	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.b #36	ENSGT00390000006224 #37	ENSGT00390000014984
Pecora	ANCESTRAL SPECIES	2	ENSGT00940000157218.C	ENSGT00970000194001	ENSGT00940000154436.b #9	ENSGT00940000154436.a #10	ENSGT00940000160362 #11	ENSGT00390000014577.b #12	ENSGT00390000004248 #13	ENSGT00950000182834.C #14	ENSGT00390000007816 #17	ENSGT00940000154721.yb ##18	ENSGT00700000105447	ENSGT00940000154721.xb.a #18	ENSGT00940000153341.b.p.a.a	ENSGT00940000158624 #20	ENSGT00940000158725 #21	ENSGT00390000003084 #22	ENSGT00940000154169.B #23	ENSGT00390000006113 #24	ENSGT00940000160531 #25	ENSGT00940000161958 #26	ENSGT00940000156792 #27	ENSGT00940000160928 #28	ENSGT01090000260044.A.a.b.a.b.e.b ##29	ENSGT01090000260044.A.a.b.a.b.f ##29	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.a #29	ENSGT01090000260044.A.a.b.a.a.a.a.b #30	ENSGT01090000260044.A.a.b.a.a.a.a.a.b #31	ENSGT01090000260044.A.a.b.a.a.a.b #33	ENSGT01090000260044.A.a.b.a.a.b #32	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.b #36	ENSGT00390000006224 #37
Percora_a	ANCESTRAL SPECIES	1	ENSGT00940000157218.C	ENSGT00970000194001	ENSGT00940000154436.b #9	ENSGT00940000154436.a #10	ENSGT00940000160362 #11	ENSGT00390000014577.b #12	ENSGT00390000004248 #13	ENSGT00950000182834.C #14	ENSGT00390000007816 #17	ENSGT00940000154721.yb ##18	ENSGT00700000105447	ENSGT00940000154721.xb.a #18	ENSGT00940000153341.b.p.a.a	ENSGT00940000158624 #20	ENSGT00940000158725 #21	ENSGT00390000003084 #22	ENSGT00940000154169.B #23	ENSGT00390000006113 #24	ENSGT00940000160531 #25	ENSGT00940000161958 #26	ENSGT00940000156792 #27	ENSGT00940000160928 #28	ENSGT01090000260044.A.a.b.a.b.e.b ##29	ENSGT01090000260044.A.a.b.a.b.f.a ##29	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.a #29	ENSGT01090000260044.A.a.b.a.a.a.a.b #30	ENSGT01090000260044.A.a.b.a.a.a.a.a.b #31	ENSGT01090000260044.A.a.b.a.a.a.b #33	ENSGT01090000260044.A.a.b.a.a.b #32	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.b #36	ENSGT00390000006224 #37
Bovidae	ANCESTRAL SPECIES	1	ENSGT00970000194001	ENSGT00940000154436.b #9	ENSGT00940000154436.a #10	ENSGT00940000160362 #11	ENSGT00390000014577.b #12	ENSGT00390000004248 #13	ENSGT00950000182834.C #14	ENSGT00390000007816 #17	ENSGT00940000154721.yb ##18	ENSGT00700000105447	ENSGT00940000154721.xb.a #18	ENSGT00940000153341.b.p.a.b.b	ENSGT00940000153341.b.p.a.a	ENSGT00940000158624 #20	ENSGT00940000158725 #21	ENSGT00390000003084 #22	ENSGT00940000154169.B #23	ENSGT00390000006113 #24	ENSGT00940000160531 #25	ENSGT00940000161958 #26	ENSGT00940000156792 #27	ENSGT00940000160928 #28	ENSGT01090000260044.A.a.b.a.b.f.b ##29	ENSGT01090000260044.A.a.b.a.b.e.b ##29	ENSGT01090000260044.A.a.b.a.b.f.a ##29	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.a #29	ENSGT01090000260044.A.a.b.a.a.a.a.b #30	ENSGT01090000260044.A.a.b.a.a.a.a.a.b #31	ENSGT01090000260044.A.a.b.a.a.a.b #33	ENSGT01090000260044.A.a.b.a.a.b #32	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.b #36
Bovinae	ANCESTRAL SPECIES	1	ENSGT00940000154436.a #10	ENSGT00940000160362 #11	ENSGT00390000014577.b #12	ENSGT00390000004248 #13	ENSGT00950000182834.C #14	ENSGT00390000000654	ENSGT00940000167024 #15	ENSGT00940000153342.b.i.a.b #16	ENSGT00390000007816 #17	ENSGT00940000154721.yb ##18	ENSGT00700000105447	ENSGT00940000154721.xb.a #18	ENSGT00940000153341.b.p.a.a	ENSGT00940000158624 #20	ENSGT00940000158725 #21	ENSGT00390000003084 #22	ENSGT00940000154169.B #23	ENSGT00390000006113 #24	ENSGT00940000160531 #25	ENSGT00940000161958 #26	ENSGT00940000156792 #27	ENSGT00940000160928 #28	ENSGT01090000260044.A.a.b.a.b.f.b ##29	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.a #29	ENSGT01090000260044.A.a.b.a.a.a.a.b #30	ENSGT01090000260044.A.a.b.a.a.a.a.a.b #31	ENSGT01090000260044.A.a.b.a.b.f.a ##29	ENSGT01090000260044.A.a.b.a.a.a.b #33	ENSGT01090000260044.A.a.b.a.a.b #32	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.b #36	ENSGT00390000006224 #37
Bos	ANCESTRAL SPECIES		ENSGT00940000154436.a #10	ENSGT00940000160362 #11	ENSGT00390000014577.b #12	ENSGT00390000004248 #13	ENSGT00950000182834.C #14	ENSGT00390000000654	ENSGT00940000167024 #15	ENSGT00940000153342.b.i.a.b #16	ENSGT00390000007816 #17	ENSGT00940000154721.yb ##18	ENSGT00700000105447	ENSGT00940000154721.xb.a #18	ENSGT00940000153341.b.p.a.a	ENSGT00940000158624 #20	ENSGT00940000158725 #21	ENSGT00390000003084 #22	ENSGT00940000154169.B #23	ENSGT00390000006113 #24	ENSGT00940000160531.l #25	ENSGT00940000161958 #26	ENSGT00940000156792 #27	ENSGT00940000160928 #28	ENSGT01090000260044.A.a.b.a.b.f.b ##29	ENSGT01090000260044.A.a.b.a.b.f.a ##29	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.a #29	ENSGT01090000260044.A.a.b.a.a.a.a.b #30	ENSGT01090000260044.A.a.b.a.a.a.a.a.b #31	ENSGT01090000260044.A.a.b.a.a.b.a #32	ENSGT01090000260044.A.a.b.a.a.b.b #35	ENSGT01090000260044.A.a.b.a.a.a.b #33	ENSGT01100000263497.E.b.f.b.a #34
Bos_a	ANCESTRAL SPECIES	1	ENSGT00970000194001	ENSGT00940000154436.b #9	ENSGT00940000154436.a #10	ENSGT00940000160362 #11	ENSGT00390000014577.b #12	ENSGT00390000004248 #13	ENSGT00950000182834.C #14	ENSGT00390000000654	ENSGT00940000167024 #15	ENSGT00940000153342.b.i.a.b #16	ENSGT00390000007816 #17	ENSGT00940000154721.xb.a #18	ENSGT00940000153341.b.p.a.a	ENSGT00940000158624 #20	ENSGT00940000158725 #21	ENSGT00390000003084 #22	ENSGT00940000154169.B #23	ENSGT00390000006113 #24	ENSGT00940000160531.l #25	ENSGT00940000161958 #26	ENSGT00940000156792 #27	ENSGT00940000160928 #28	ENSGT01090000260044.A.a.b.a.b.f.b ##29	ENSGT01090000260044.A.a.b.a.b.f.a ##29	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.a #29	ENSGT01090000260044.A.a.b.a.a.a.a.b #30	ENSGT01090000260044.A.a.b.a.a.a.a.a.b #31	ENSGT01090000260044.A.a.b.a.a.b.a #32	ENSGT01090000260044.A.a.b.a.a.a.b #33	ENSGT01090000260044.A.a.b.a.a.b.b #35	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.b #36
Domestic yak	MODERN SPECIES	22	ENSBGRG00000014045 #7	ENSBGRG00000014026 #8	ENSBGRG00000013948 #9	GUCA2A (ENSBGRG00000013890) #10	FOXJ3 (ENSBGRG00000013409) #11	RIMKLA (ENSBGRG00000013342) #12	ZMYND12 (ENSBGRG00000013236) #13	PPCS (ENSBGRG00000013144) #14	ENSBGRG00000013002 #15	ENSBGRG00000012949 #16	ENSBGRG00000012821 #17	ENSBGRG00000012681 #18	ENSBGRG00000012514 #19	CLDN19 (ENSBGRG00000012480) #20	P3H1 (ENSBGRG00000012203) #21	C1orf50 (ENSBGRG00000012101) #22	ENSBGRG00000012038 #23	SVBP (ENSBGRG00000011987) #24	ENSBGRG00000011933 #25	ZNF691 (ENSBGRG00000011897) #26	SLC2A1 (ENSBGRG00000011665) #27	ENSBGRG00000011573 #28	ENSBGRG00000011491 #29	ENSBGRG00000011456 #30	ENSBGRG00000011449 #31	ENSBGRG00000011420 #32	ENSBGRG00000011360 #33	ENSBGRG00000011337 #34	ENSBGRG00000011307 #35	ENSBGRG00000011267 #36	CFAP144 (ENSBGRG00000011192) #37
Wild yak	MODERN SPECIES	1280												ENSBMUG00000007203 #18	ENSBMUG00000007078	CLDN19 (ENSBMUG00000007045) #20	P3H1 (ENSBMUG00000007025) #21	C1orf50 (ENSBMUG00000007012) #22	ENSBMUG00000007003 #23	SVBP (ENSBMUG00000006993) #24	ZNF691 (ENSBMUG00000006983) #26	SLC2A1 (ENSBMUG00000006972) #27
Bos_b	ANCESTRAL SPECIES	1	ENSGT00940000154436.b #9	ENSGT00940000154436.a #10	ENSGT00940000160362 #11	ENSGT00390000014577.b #12	ENSGT00390000004248 #13	ENSGT00950000182834.C #14	ENSGT00940000167024 #15	ENSGT00940000153342.b.i.a.b #16	ENSGT00390000007816 #17	ENSGT00940000154721.yb ##18	ENSGT00700000105447	ENSGT00940000154721.xb.a #18	ENSGT00940000153341.b.p.a.b.b	ENSGT00940000158624 #20	ENSGT00940000158725 #21	ENSGT00390000003084 #22	ENSGT00940000154169.B #23	ENSGT00390000006113 #24	ENSGT00940000160531.l #25	ENSGT00940000161958 #26	ENSGT00940000156792 #27	ENSGT00940000160928 #28	ENSGT01090000260044.A.a.b.a.b.f.b ##29	ENSGT01090000260044.A.a.b.a.b.f.a ##29	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.a #29	ENSGT01090000260044.A.a.b.a.a.a.a.b #30	ENSGT01090000260044.A.a.b.a.a.a.a.a.b #31	ENSGT01090000260044.A.a.b.a.a.a.b #33	ENSGT01090000260044.A.a.b.a.a.b.a #32	ENSGT01100000263497.E.b.f.b.a #34	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.b #36
Cow	MODERN SPECIES	22	EDN2 (ENSBTAG00000021434)	HIVEP3 (ENSBTAG00000020745)	GUCA2B (ENSBTAG00000007194) #9	GUCA2A (ENSBTAG00000007195) #10	FOXJ3 (ENSBTAG00000015887) #11	RIMKLA (ENSBTAG00000017502) #12	ZMYND12 (ENSBTAG00000012979) #13	PPCS (ENSBTAG00000012982) #14	ENSBTAG00000052771 #16	CCDC30 (ENSBTAG00000004585) #17	ENSBTAG00000050906	PPIH (ENSBTAG00000004590) ##18	YBX1 (ENSBTAG00000017368)	CLDN19 (ENSBTAG00000017381) #20	P3H1 (ENSBTAG00000017382) #21	C3H1orf50 (ENSBTAG00000017386) #22	SVBP (ENSBTAG00000017388) #24	TMEM269 (ENSBTAG00000017387) #25	ZNF691 (ENSBTAG00000016028) #26	SLC2A1 (ENSBTAG00000009617) #27	ENSBTAG00000012414 #28	OR13P16B (ENSBTAG00000048721) #29	OR13P8 (ENSBTAG00000037770) #30	OR10AK7 (ENSBTAG00000037810) ##29	OR13P4 (ENSBTAG00000001397) #33	OR13P11 (ENSBTAG00000053196) #32	OR13P2 (ENSBTAG00000048444) #35	ENSBTAG00000051805 #36	FAM183A (ENSBTAG00000037555) #37	EBNA1BP2 (ENSBTAG00000021544)	CFAP57 (ENSBTAG00000021547)
Hybrid Bos Indicus	MODERN SPECIES	22	ENSBIXG00005029448 #7	GUCA2B (ENSBIXG00005029429) #9	ENSBIXG00005029424 #10	FOXJ3 (ENSBIXG00005029367) #11	RIMKLA (ENSBIXG00005029322) #12	ZMYND12 (ENSBIXG00005029316) #13	PPCS (ENSBIXG00005029303) #14	ENSBIXG00005029286 #15	ENSBIXG00005007856 #16	ENSBIXG00005007865 #17	ENSBIXG00005007879	ENSBIXG00005007897 #18	YBX1 (ENSBIXG00005007911)	CLDN19 (ENSBIXG00005007924) #20	P3H1 (ENSBIXG00005007944) #21	C1orf50 (ENSBIXG00005007953) #22	ENSBIXG00005000043 #23	ENSBIXG00005000066	ENSBIXG00005008000 #25	ZNF691 (ENSBIXG00005008018) #26	SLC2A1 (ENSBIXG00005008046) #27	ENSBIXG00005000102	ENSBIXG00005008058 ##8	ENSBIXG00005008067 ##7	ENSBIXG00005008087 #28	ENSBIXG00005008104 ##29	ENSBIXG00005008124 ##29	ENSBIXG00005008138 #29	ENSBIXG00005008149 #30	ENSBIXG00005008162 #31	ENSBIXG00005000129 ##7
American bison	MODERN SPECIES	3342	HIVEP3 (ENSBBBG00000001537)	ENSBBBG00000009514	GUCA2B (ENSBBBG00000009516) #9	GUCA2A (ENSBBBG00000009517) #10	FOXJ3 (ENSBBBG00000009523) #11	RIMKLA (ENSBBBG00000001542) #12	ZMYND12 (ENSBBBG00000009529) #13	PPCS (ENSBBBG00000009532) #14	ENSBBBG00000007694 #15	ENSBBBG00000001545 #16	ENSBBBG00000009540 #17	ENSBBBG00000009548 #18	ENSBBBG00000009552	CLDN19 (ENSBBBG00000009558) #20	P3H1 (ENSBBBG00000009562) #21	C1orf50 (ENSBBBG00000009566) #22	TMEM269 (ENSBBBG00000009568)	SVBP (ENSBBBG00000001549) #24	ZNF691 (ENSBBBG00000009575) #26	SLC2A1 (ENSBBBG00000009579) #27	ENSBBBG00000009582 #28	ENSBBBG00000009587 ##29	ENSBBBG00000009590 #29	ENSBBBG00000009592 #30	ENSBBBG00000001552 #31	ENSBBBG00000009600 ##29	ENSBBBG00000009601 #33	ENSBBBG00000009604 #34	ENSBBBG00000009607 #36	CFAP144 (ENSBBBG00000009608) #37	EBNA1BP2 (ENSBBBG00000009613)
Caprinae	ANCESTRAL SPECIES	2	ENSGT00940000157999.b	ENSGT00940000161401	ENSGT00950000183053.A	ENSGT00940000157218.C	ENSGT00940000154436.b #9	ENSGT00940000154436.a #10	ENSGT00940000160362 #11	ENSGT00390000014577.b #12	ENSGT00390000004248 #13	ENSGT00950000182834.C #14	ENSGT00390000007816 #17	ENSGT00940000154721.xb.a #18	ENSGT00940000153341.b.p.a.b.b.f	ENSGT00940000158624 #20	ENSGT00940000158725 #21	ENSGT00390000003084 #22	ENSGT00940000154169.B #23	ENSGT00390000006113 #24	ENSGT00940000160531 #25	ENSGT00940000161958 #26	ENSGT00940000156792 #27	ENSGT00940000160928 #28	ENSGT01090000260044.A.a.b.a.b.e.b ##29	ENSGT01090000260044.A.a.b.a.b.f.a ##29	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.a #29	ENSGT01090000260044.A.a.b.a.a.a.a.b #30	ENSGT01090000260044.A.a.b.a.a.a.a.a.b #31	ENSGT01090000260044.A.a.b.a.a.a.b #33	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.b #36	ENSGT00390000006224 #37	ENSGT00390000014984
Goat	MODERN SPECIES	22	FOXO6 (ENSCHIG00000018218)	EDN2 (ENSCHIG00000024063)	HIVEP3 (ENSCHIG00000011517)	ENSCHIG00000012856	GUCA2B (ENSCHIG00000019738) #9	GUCA2A (ENSCHIG00000005275) #10	FOXJ3 (ENSCHIG00000021942) #11	RIMKLA (ENSCHIG00000015404) #12	ZMYND12 (ENSCHIG00000007728) #13	PPCS (ENSCHIG00000022863) #14	CCDC30 (ENSCHIG00000018207) #17	ENSCHIG00000007905 #18	ENSCHIG00000014169	CLDN19 (ENSCHIG00000017870) #20	P3H1 (ENSCHIG00000008788) #21	C1orf50 (ENSCHIG00000015103) #22	ENSCHIG00000017910 #23	SVBP (ENSCHIG00000008164) #24	ENSCHIG00000013284	ERMAP (ENSCHIG00000013586) #25	ZNF691 (ENSCHIG00000012591) #26	ENSCHIG00000000575	SLC2A1 (ENSCHIG00000015523) #27	ENSCHIG00000020869 #28	ENSCHIG00000023252	ENSCHIG00000012428 ##29	ENSCHIG00000008088 ##29	ENSCHIG00000023263 #29	ENSCHIG00000017587 #30	ENSCHIG00000018185 #31	ENSCHIG00000008479 #33
Rambouillet Sheep	DUPLICATION
Rambouillet Sheep	MODERN SPECIES		CTPS1 (ENSOARG00020000058)	SLFNL1 (ENSOARG00020000061)	SCMH1 (ENSOARG00020000067)	EDN2 (ENSOARG00020000081)	HIVEP3 (ENSOARG00020000082)	GUCA2B (ENSOARG00020000089) #9	GUCA2A (ENSOARG00020000095) #10	FOXJ3 (ENSOARG00020000103) #11	RIMKLA (ENSOARG00020000124) #12	ZMYND12 (ENSOARG00020000132) #13	PPCS (ENSOARG00020000145) #14	PPIH (ENSOARG00020000274) #18	ENSOARG00020000296	CLDN19 (ENSOARG00020000325) #20	P3H1 (ENSOARG00020000368) #21	ENSOARG00020000393 #22	TMEM269 (ENSOARG00020000403)	SVBP (ENSOARG00020000415) #24	ZNF691 (ENSOARG00020000426) #26	SLC2A1 (ENSOARG00020000445) #27	ENSOARG00020000505 #28	ENSOARG00020000545 ##29	ENSOARG00020000553 ##29	ENSOARG00020000560 #29	ENSOARG00020000608 #30	ENSOARG00020000619 #31	ENSOARG00020000631 #33	ENSOARG00020000636 #36	CFAP144 (ENSOARG00020000642) #37	EBNA1BP2 (ENSOARG00020000671)	CFAP57 (ENSOARG00020000692)
Rambouillet Sheep	MODERN SPECIES		ZSWIM5 (ENSOARG00020003848)	ENSOARG00020000037	HPDL (ENSOARG00020000043)	MUTYH (ENSOARG00020000051)	TOE1 (ENSOARG00020000052)	TESK2 (ENSOARG00020000085)	ENSOARG00020000128	MMACHC (ENSOARG00020000138)	PRDX1 (ENSOARG00020000156)	AKR1A1 (ENSOARG00020000189)	ENSOARG00020000265	CCDC17 (ENSOARG00020000364)	GPBP1L1 (ENSOARG00020000433)	TMEM69 (ENSOARG00020000462)	IPP (ENSOARG00020000478)	ENSOARG00020000500 #22	MAST2 (ENSOARG00020000575)	PIK3R3 (ENSOARG00020000796)	P3R3URF (ENSOARG00020000858)	TSPAN1 (ENSOARG00020000865)	POMGNT1 (ENSOARG00020000885)	LURAP1 (ENSOARG00020000928)	RAD54L (ENSOARG00020000936)	LRRC41 (ENSOARG00020000971)	UQCRH (ENSOARG00020000996)	NSUN4 (ENSOARG00020001022)	ENSOARG00020001036	FAAH (ENSOARG00020001048)	ENSOARG00020001062	DMBX1 (ENSOARG00020001077)	TMEM275 (ENSOARG00020001085)
Siberian musk deer	MODERN SPECIES	341	FOXO6 (ENSMMSG00000004411)	EDN2 (ENSMMSG00000004392)	HIVEP3 (ENSMMSG00000004366)	ENSMMSG00000004347	GUCA2B (ENSMMSG00000004328) #9	GUCA2A (ENSMMSG00000012152) #10	FOXJ3 (ENSMMSG00000012062) #11	ENSMMSG00000012015 #12	ZMYND12 (ENSMMSG00000011979) #13	PPCS (ENSMMSG00000011950) #14	CCDC30 (ENSMMSG00000011727) #17	ENSMMSG00000011645 #18	ENSMMSG00000011587	CLDN19 (ENSMMSG00000011553) #20	P3H1 (ENSMMSG00000011524) #21	C1orf50 (ENSMMSG00000011500) #22	TMEM269 (ENSMMSG00000011462)	SVBP (ENSMMSG00000011448) #24	ZNF691 (ENSMMSG00000011438) #26	SLC2A1 (ENSMMSG00000011409) #27	ENSMMSG00000011317 #28	ENSMMSG00000011289 ##29	ENSMMSG00000011280 ##29	ENSMMSG00000011250 ##29	ENSMMSG00000011215 #29	ENSMMSG00000011203 #30	ENSMMSG00000011188 #31	ENSMMSG00000011179 #33	ENSMMSG00000011165 #32	CFAP144 (ENSMMSG00000011143) #37	EBNA1BP2 (ENSMMSG00000011120)
Yarkand deer	MODERN SPECIES	12	GUCA2B (ENSCHYG00000026652) #9	GUCA2A (ENSCHYG00000026642) #10	FOXJ3 (ENSCHYG00000026583) #11	RIMKLA (ENSCHYG00000026570) #12	ZMYND12 (ENSCHYG00000026553) #13	ENSCHYG00000026542	ENSCHYG00000026536	ENSCHYG00000026530	ENSCHYG00000026495 #17	ENSCHYG00000026477	ENSCHYG00000026472	ENSCHYG00000026459 #18	ENSCHYG00000026406 #19	CLDN19 (ENSCHYG00000026379) #20	P3H1 (ENSCHYG00000026274) #21	C1orf50 (ENSCHYG00000026253) #22	ENSCHYG00000026241 #23	ENSCHYG00000026229 #24	ZNF691 (ENSCHYG00000026220) #26	SLC2A1 (ENSCHYG00000026195) #27	ENSCHYG00000026156 #28	ENSCHYG00000026141 ##29	ENSCHYG00000026119 ##29	ENSCHYG00000026091 #29	ENSCHYG00000026082 #33	ENSCHYG00000026072 #36	CFAP144 (ENSCHYG00000026054) #37	EBNA1BP2 (ENSCHYG00000026041)	CFAP57 (ENSCHYG00000025802)	TMEM125 (ENSCHYG00000025774)	C1orf210 (ENSCHYG00000025765)
Cetacea	ANCESTRAL SPECIES		ENSGT00950000183053.A	ENSGT00940000157218.C	ENSGT00940000154436.b #9	ENSGT00940000154436.a #10	ENSGT00940000160362 #11	ENSGT00390000014577.b #12	ENSGT00390000004248 #13	ENSGT00950000182834.C #14	ENSGT00390000007816 #17	ENSGT00940000167024 #15	ENSGT00940000154721.wb #18	ENSGT00940000153341.b.p.a.b.b	ENSGT00940000153341.b.p.a.a	ENSGT00940000158624 #20	ENSGT00940000158725 #21	ENSGT00390000003084 #22	ENSGT00940000154169.B #23	ENSGT00390000006113 #24	ENSGT00940000160531 #25	ENSGT00940000161958 #26	ENSGT00940000156792 #27	ENSGT00940000160928 #28	ENSGT01090000260044.A.a.b.a.b ##29	ENSGT00390000006224 #37	ENSGT00390000014984	ENSGT00620000088018.h	ENSGT00390000003015	ENSGT00510000048988	ENSGT00940000155028.q.a.d	ENSGT00940000157693	ENSGT00940000161225
Odontoceti	ANCESTRAL SPECIES		ENSGT00950000183053.A	ENSGT00940000157218.C	ENSGT00940000154436.b #9	ENSGT00940000154436.a #10	ENSGT00940000160362 #11	ENSGT00390000014577.b #12	ENSGT00390000004248 #13	ENSGT00950000182834.C #14	ENSGT00390000007816 #17	ENSGT00940000167024 #15	ENSGT00940000154721.wb #18	ENSGT00940000153341.b.p.a.b.b	ENSGT00940000153341.b.p.a.a	ENSGT00940000158624 #20	ENSGT00940000158725 #21	ENSGT00390000003084 #22	ENSGT00940000154169.B #23	ENSGT00390000006113 #24	ENSGT00940000160531 #25	ENSGT00940000161958 #26	ENSGT00940000156792 #27	ENSGT00940000160928 #28	ENSGT01090000260044.A.a.b.a.b ##29	ENSGT00390000006224 #37	ENSGT00390000014984	ENSGT00620000088018.h	ENSGT00390000003015	ENSGT00510000048988	ENSGT00940000155028.q.a.d	ENSGT00940000157693	ENSGT00940000161225
Odontoceti_a	ANCESTRAL SPECIES		ENSGT00950000183053.A	ENSGT00940000157218.C	ENSGT00940000154436.b #9	ENSGT00940000154436.a #10	ENSGT00940000160362 #11	ENSGT00390000014577.b #12	ENSGT00390000004248 #13	ENSGT00950000182834.C #14	ENSGT00390000007816 #17	ENSGT00940000167024 #15	ENSGT00940000154721.wb #18	ENSGT00940000153341.b.p.a.b.b	ENSGT00940000153341.b.p.a.a	ENSGT00940000158624 #20	ENSGT00940000158725 #21	ENSGT00390000003084 #22	ENSGT00940000154169.B #23	ENSGT00390000006113 #24	ENSGT00940000160531 #25	ENSGT00940000161958 #26	ENSGT00940000156792 #27	ENSGT00940000160928 #28	ENSGT01090000260044.A.a.b.a.b ##29	ENSGT00390000006224 #37	ENSGT00390000014984	ENSGT00620000088018.h	ENSGT00390000003015	ENSGT00510000048988	ENSGT00940000157693	ENSGT00940000161225	ENSGT00950000183104.A.a.a
Odontoceti_b	ANCESTRAL SPECIES		ENSGT00390000018145.xc.a.b	ENSGT00950000183053.A	ENSGT00940000157218.C	ENSGT00940000154436.b #9	ENSGT00940000154436.a #10	ENSGT00940000160362 #11	ENSGT00390000014577.b #12	ENSGT00390000004248 #13	ENSGT00950000182834.C #14	ENSGT00390000007816 #17	ENSGT00940000167024 #15	ENSGT00940000154721.wb #18	ENSGT00940000153341.b.p.a.b.b	ENSGT00940000158624 #20	ENSGT00940000158725 #21	ENSGT00390000003084 #22	ENSGT00940000154169.B #23	ENSGT00390000006113 #24	ENSGT00940000161958 #26	ENSGT00940000156792 #27	ENSGT00940000160928 #28	ENSGT01090000260044.A.a.b.a.b ##29	ENSGT00390000006224 #37	ENSGT00390000014984	ENSGT00620000088018.h	ENSGT00390000003015	ENSGT00510000048988	ENSGT00940000157693	ENSGT00940000161225	ENSGT00950000183104.A.a.a	ENSGT01050000244838.H.d
Monodontidae	ANCESTRAL SPECIES		ENSGT00390000018145.xc.a.b	ENSGT00950000183053.A	ENSGT00940000157218.C	ENSGT00940000154436.b #9	ENSGT00940000154436.a #10	ENSGT00940000160362 #11	ENSGT00390000014577.b #12	ENSGT00390000004248 #13	ENSGT00950000182834.C #14	ENSGT00390000007816 #17	ENSGT00940000167024 #15	ENSGT00940000154721.wb #18	ENSGT00940000153341.b.p.a.a	ENSGT00940000158624 #20	ENSGT00940000158725 #21	ENSGT00390000003084 #22	ENSGT00940000154169.B #23	ENSGT00390000006113 #24	ENSGT00940000161958 #26	ENSGT00940000156792 #27	ENSGT00940000160928 #28	ENSGT01090000260044.A.a.b.a.b ##29	ENSGT00390000006224 #37	ENSGT00390000014984	ENSGT00620000088018.h	ENSGT00390000003015	ENSGT00510000048988	ENSGT00940000157693	ENSGT00940000161225	ENSGT00950000183104.A.a.a	ENSGT01050000244838.H.d
Narwhal	MODERN SPECIES	304	FOXO6 (ENSMMNG00015008018)	ENSMMNG00015008007	EDN2 (ENSMMNG00015007991)	HIVEP3 (ENSMMNG00015007974)	GUCA2B (ENSMMNG00015007941) #9	GUCA2A (ENSMMNG00015007926) #10	FOXJ3 (ENSMMNG00015007886) #11	RIMKLA (ENSMMNG00015007858) #12	ZMYND12 (ENSMMNG00015007834) #13	PPCS (ENSMMNG00015007805) #14	CCDC30 (ENSMMNG00015007748) #17	PPIH (ENSMMNG00015007690) #18	YBX1 (ENSMMNG00015007648)	CLDN19 (ENSMMNG00015007624) #20	P3H1 (ENSMMNG00015007575) #21	C1orf50 (ENSMMNG00015007545) #22	TMEM269 (ENSMMNG00015007521)	SVBP (ENSMMNG00015007502) #24	ZNF691 (ENSMMNG00015007480) #26	ENSMMNG00015007458	SLC2A1 (ENSMMNG00015007427) #27	ENSMMNG00015007379 #28	CFAP144 (ENSMMNG00015007355) #37	EBNA1BP2 (ENSMMNG00015007327)	CFAP57 (ENSMMNG00015007260)	TMEM125 (ENSMMNG00015007230)	C1orf210 (ENSMMNG00015007209)	TIE1 (ENSMMNG00015007163)	MPL (ENSMMNG00015007116)	CDC20 (ENSMMNG00015007090)	ELOVL1 (ENSMMNG00015007061)
Beluga whale	MODERN SPECIES	74	EDN2 (ENSDLEG00000021581)	HIVEP3 (ENSDLEG00000021584)	ENSDLEG00000021586	GUCA2B (ENSDLEG00000021590) #9	GUCA2A (ENSDLEG00000021593) #10	FOXJ3 (ENSDLEG00000021596) #11	RIMKLA (ENSDLEG00000021602) #12	ZMYND12 (ENSDLEG00000021604) #13	PPCS (ENSDLEG00000021607) #14	ENSDLEG00000021610 #17	ENSDLEG00000021612 #15	PPIH (ENSDLEG00000021616) #18	ENSDLEG00000021624	CLDN19 (ENSDLEG00000021627) #20	P3H1 (ENSDLEG00000021628) #21	CUNH1orf50 (ENSDLEG00000021632) #22	TMEM269 (ENSDLEG00000021634) #23	SVBP (ENSDLEG00000021636) #24	ENSDLEG00000021637	ZNF691 (ENSDLEG00000021639) #26	ENSDLEG00000021641	SLC2A1 (ENSDLEG00000021645) #27	ENSDLEG00000021652 #28	ENSDLEG00000021653 ##29	CFAP144 (ENSDLEG00000021655) #37	EBNA1BP2 (ENSDLEG00000021657)	CFAP57 (ENSDLEG00000021663)	TMEM125 (ENSDLEG00000021673)	CUNH1orf210 (ENSDLEG00000021675)	TIE1 (ENSDLEG00000021678)	MPL (ENSDLEG00000021691)
Vaquita	MODERN SPECIES		EDN2 (ENSPSNG00000001170)	HIVEP3 (ENSPSNG00000001194)	ENSPSNG00000001210	ENSPSNG00000001228	GUCA2B (ENSPSNG00000001245) #9	GUCA2A (ENSPSNG00000001265) #10	FOXJ3 (ENSPSNG00000001302) #11	RIMKLA (ENSPSNG00000001330) #12	ZMYND12 (ENSPSNG00000001355) #13	PPCS (ENSPSNG00000001382) #14	CCDC30 (ENSPSNG00000001449) #17	PPIH (ENSPSNG00000001568) #18	ENSPSNG00000001610	CLDN19 (ENSPSNG00000001633) #20	P3H1 (ENSPSNG00000001672) #21	C1orf50 (ENSPSNG00000001717) #22	TMEM269 (ENSPSNG00000001731)	SVBP (ENSPSNG00000001745) #24	ZNF691 (ENSPSNG00000001763) #26	ENSPSNG00000001793	SLC2A1 (ENSPSNG00000001817) #27	ENSPSNG00000001857 #28	ENSPSNG00000001980 ##29	CFAP144 (ENSPSNG00000002097) #37	EBNA1BP2 (ENSPSNG00000002122)	CFAP57 (ENSPSNG00000002159)	TMEM125 (ENSPSNG00000002216)	C1orf210 (ENSPSNG00000002229)	TIE1 (ENSPSNG00000002270)	MPL (ENSPSNG00000002348)	CDC20 (ENSPSNG00000002393)
Dolphin	MODERN SPECIES	6588																C1orf50 (ENSTTRG00000014537) #22	SVBP (ENSTTRG00000014536) #24	ENSTTRG00000014535 #25
Sperm whale	MODERN SPECIES	14	SCMH1 (ENSPCTG00005000419)	EDN2 (ENSPCTG00005000271)	ENSPCTG00005000247	ENSPCTG00005000219	GUCA2B (ENSPCTG00005000211) #9	GUCA2A (ENSPCTG00005000204) #10	FOXJ3 (ENSPCTG00005020773) #11	RIMKLA (ENSPCTG00005020737) #12	ZMYND12 (ENSPCTG00005020695) #13	PPCS (ENSPCTG00005020632) #14	CCDC30 (ENSPCTG00005020273) #17	PPIH (ENSPCTG00005020154) #18	YBX1 (ENSPCTG00005020123)	CLDN19 (ENSPCTG00005020001) #20	P3H1 (ENSPCTG00005019953) #21	C1orf50 (ENSPCTG00005019888) #22	ENSPCTG00005019858 #23	SVBP (ENSPCTG00005019838) #24	ZNF691 (ENSPCTG00005019753) #26	ENSPCTG00005019688	SLC2A1 (ENSPCTG00005019653) #27	ENSPCTG00005019590 #28	ENSPCTG00005019515 ##29	FAM183A (ENSPCTG00005019482) #37	EBNA1BP2 (ENSPCTG00005019454)	CFAP57 (ENSPCTG00005019022)	TMEM125 (ENSPCTG00005019000)	C3H1orf210 (ENSPCTG00005018962)	ENSPCTG00005018926	TIE1 (ENSPCTG00005018633)	MPL (ENSPCTG00005018368)
Blue whale	MODERN SPECIES		EDN2 (ENSBMSG00010010097)	HIVEP3 (ENSBMSG00010010109)	ENSBMSG00010010121	ENSBMSG00010010128	GUCA2B (ENSBMSG00010010144) #9	GUCA2A (ENSBMSG00010010152) #10	FOXJ3 (ENSBMSG00010010186) #11	RIMKLA (ENSBMSG00010010236) #12	ZMYND12 (ENSBMSG00010010252) #13	PPCS (ENSBMSG00010010269) #14	CCDC30 (ENSBMSG00010010308) #17	ENSBMSG00010010377 #18	YBX1 (ENSBMSG00010010405)	CLDN19 (ENSBMSG00010010425) #20	P3H1 (ENSBMSG00010010456) #21	C1orf50 (ENSBMSG00010010485) #22	TMEM269 (ENSBMSG00010010497)	SVBP (ENSBMSG00010010511) #24	ZNF691 (ENSBMSG00010010530) #26	ENSBMSG00010010544	SLC2A1 (ENSBMSG00010010558) #27	ENSBMSG00010010569 ##29	CFAP144 (ENSBMSG00010010583) #37	EBNA1BP2 (ENSBMSG00010010600)	CFAP57 (ENSBMSG00010010615)	TMEM125 (ENSBMSG00010010677)	C1orf210 (ENSBMSG00010010682)	TIE1 (ENSBMSG00010010706)	MPL (ENSBMSG00010010732)	ENSBMSG00010010760	ELOVL1 (ENSBMSG00010010782)
Camelidae	ANCESTRAL SPECIES	11	ENSGT00940000157999	ENSGT00940000161401	ENSGT00950000183053.A	ENSGT00940000157218.C	ENSGT00940000154436.b #9	ENSGT00940000154436.a #10	ENSGT00940000160362 #11	ENSGT00390000014577.b.i #12	ENSGT00390000004248 #13	ENSGT00950000182834.C #14	ENSGT00390000007816 #17	ENSGT00940000154721 #18	ENSGT00940000153341.b.p.a.a	ENSGT00940000158624 #20	ENSGT00940000158725 #21	ENSGT00390000003084 #22	ENSGT00940000154169.B #23	ENSGT00390000006113 #24	ENSGT00940000160531 #25	ENSGT00940000161958 #26	ENSGT00940000156792 #27	ENSGT00940000160928 #28	ENSGT01090000260044.A.a.b.a.a.a.a.a.a.a #29	ENSGT01090000260044.A.a.b.a.a.a.a.b #30	ENSGT01090000260044.A.a.b.a.a.a.a.a.b #31	ENSGT00390000006224 #37	ENSGT00390000014984	ENSGT00620000088018.h	ENSGT00390000003015	ENSGT00510000048988	ENSGT00940000157693
Alpaca	MODERN SPECIES	23															ENSVPAG00000011325 #21	C1orf50 (ENSVPAG00000011326) #22	SVBP (ENSVPAG00000011327) #24	ERMAP (ENSVPAG00000011329) #25	ZNF691 (ENSVPAG00000011330) #26
Arabian camel	MODERN SPECIES	4	FOXO6 (ENSCDRG00005015434)	EDN2 (ENSCDRG00005015453)	HIVEP3 (ENSCDRG00005015500)	ENSCDRG00005015546	GUCA2B (ENSCDRG00005015564) #9	GUCA2A (ENSCDRG00005015592) #10	FOXJ3 (ENSCDRG00005015630) #11	ENSCDRG00005015740 #12	ZMYND12 (ENSCDRG00005015787) #13	PPCS (ENSCDRG00005015813) #14	CCDC30 (ENSCDRG00005015907) #17	PPIH (ENSCDRG00005016482) #18	ENSCDRG00005016631	CLDN19 (ENSCDRG00005016715) #20	P3H1 (ENSCDRG00005016774) #21	C1orf50 (ENSCDRG00005016859) #22	ENSCDRG00005016883 #23	SVBP (ENSCDRG00005016909) #24	ERMAP (ENSCDRG00005006655) #25	ZNF691 (ENSCDRG00005006794) #26	SLC2A1 (ENSCDRG00005006838) #27	ENSCDRG00005006921 #28	ENSCDRG00005007056 #33	ENSCDRG00005007096 #37	ENSCDRG00005007141 #29	ENSCDRG00005007187 #30	ENSCDRG00005007195 #31	ENSCDRG00005007207 #37	EBNA1BP2 (ENSCDRG00005007253)	CFAP57 (ENSCDRG00005007275)	TMEM125 (ENSCDRG00005007306)