Rodentia_A ANCESTRAL SPECIES ENSGT00950000183053.A #8 ENSGT00940000157218.C #9 ENSGT00970000194001 #10 ENSGT00940000154436.b #11 ENSGT00940000154436.a #12 ENSGT00940000160362 #13 ENSGT00390000014577.b #14 ENSGT00390000004248 #15 ENSGT00950000182834.C #16 ENSGT00390000000654 ENSGT00390000007816 #17 ENSGT00940000154721 #18 ENSGT00940000153341.b.p.a.a.a #19 ENSGT00940000158624 #20 ENSGT00940000158725 #21 ENSGT00390000003084 #22 ENSGT00940000154169.B #23 ENSGT00390000006113 #24 ENSGT00940000160531 #25 ENSGT00940000161958 #26 ENSGT00940000156792 #27 ENSGT00940000160928 #28 ENSGT01090000260044.A.a.b.a.b #30 ENSGT01090000260044.A.a.b.a.a.a.a.a.a.a #31 ENSGT01090000260044.A.a.b.a.a.a.a.b #32 ENSGT01090000260044.A.a.b.a.a.a.a.a.b #33 ENSGT01090000260044.A.a.b.a.a.a.b #35 ENSGT01090000260044.A.a.b.a.a.b ##36 ENSGT01090000260044.A.a.b.a.a.a.a.a.a.b #36 ENSGT00390000014984 #37 ENSGT00620000088018.h Sciuridae ANCESTRAL SPECIES 3 ENSGT00940000161401 #7 ENSGT00950000183053.A #8 ENSGT00940000157218.C #9 ENSGT00970000194001 #10 ENSGT00940000154436.b #11 ENSGT00940000154436.a #12 ENSGT00940000160362 #13 ENSGT00390000014577.b #14 ENSGT00390000004248 #15 ENSGT00950000182834.C #16 ENSGT00390000007816 #17 ENSGT00940000154721 #18 ENSGT00940000153341.b.p.a.a.a #19 ENSGT00940000158624 #20 ENSGT00940000158725 #21 ENSGT00390000003084 #22 ENSGT00940000154169.B #23 ENSGT00390000006113 #24 ENSGT00940000160531 #25 ENSGT00940000161958 #26 ENSGT00940000156792 #27 ENSGT00940000160928 #28 ENSGT01090000260044.A.a.b.a.b #30 ENSGT01090000260044.A.a.b.a.a.a.a.a.a.a #31 ENSGT01090000260044.A.a.b.a.a.a.a.b #32 ENSGT01090000260044.A.a.b.a.a.a.a.a.b #33 ENSGT01090000260044.A.a.b.a.a.a.b #35 ENSGT01090000260044.A.a.b.a.a.b ##36 ENSGT01090000260044.A.a.b.a.a.a.a.a.a.b #36 ENSGT00390000014984 #37 ENSGT00620000088018.h Eurasian red squirrel MODERN SPECIES FOXO6 (ENSSVLG00005009973) #7 EDN2 (ENSSVLG00005010001) #8 HIVEP3 (ENSSVLG00005010057) #9 ENSSVLG00005010108 #10 GUCA2B (ENSSVLG00005010132) #11 GUCA2A (ENSSVLG00005010160) #12 FOXJ3 (ENSSVLG00005010205) #13 RIMKLA (ENSSVLG00005010382) #14 ZMYND12 (ENSSVLG00005010434) #15 PPCS (ENSSVLG00005010465) #16 CCDC30 (ENSSVLG00005010582) #17 PPIH (ENSSVLG00005011156) #18 ENSSVLG00005011204 #19 CLDN19 (ENSSVLG00005011316) #20 P3H1 (ENSSVLG00005011353) #21 C1orf50 (ENSSVLG00005011424) #22 ENSSVLG00005011496 #23 SVBP (ENSSVLG00005011644) #24 ERMAP (ENSSVLG00005011679) #25 ZNF691 (ENSSVLG00005011749) #26 SLC2A1 (ENSSVLG00005011775) #27 ENSSVLG00005011876 #28 ENSSVLG00005012113 #29 ENSSVLG00005012137 #30 ENSSVLG00005012157 #31 ENSSVLG00005012249 #32 ENSSVLG00005012283 #33 ENSSVLG00005012342 #34 ENSSVLG00005012394 #35 ENSSVLG00005012413 #36 EBNA1BP2 (ENSSVLG00005012432) #37 Marmotini ANCESTRAL SPECIES ENSGT00940000161401 #7 ENSGT00950000183053.A #8 ENSGT00940000157218.C #9 ENSGT01100000264574 ENSGT00940000154436.b #11 ENSGT00940000154436.a #12 ENSGT00940000160362 #13 ENSGT00390000014577.b #14 ENSGT00390000004248 #15 ENSGT00950000182834.C #16 ENSGT00390000007816 #17 ENSGT00940000154721 #18 ENSGT00940000153341.b.p.a.a.a #19 ENSGT00940000158624 #20 ENSGT00940000158725 #21 ENSGT00390000003084 #22 ENSGT00940000154169.B #23 ENSGT00390000006113 #24 ENSGT00940000160531 #25 ENSGT00940000161958 #26 ENSGT00940000156792 #27 ENSGT00940000160928 #28 ENSGT01090000260044.A.a.b.a.a.a.a.a.a.a #31 ENSGT01090000260044.A.a.b.a.a.a.a.b #32 ENSGT01090000260044.A.a.b.a.a.a.a.a.b #33 ENSGT01090000260044.A.a.b.a.a.a.b #35 ENSGT01090000260044.A.a.b.a.a.b ##36 ENSGT01090000260044.A.a.b.a.a.a.a.a.a.b #36 ENSGT00390000014984 #37 ENSGT00620000088018.h ENSGT00390000003015 Alpin marmot MODERN SPECIES 15 HIVEP3 (ENSMMMG00000002224) #9 ENSMMMG00000002219 ENSMMMG00000002145 GUCA2B (ENSMMMG00000002123) #11 GUCA2A (ENSMMMG00000002105) #12 FOXJ3 (ENSMMMG00000002048) #13 RIMKLA (ENSMMMG00000002028) #14 ZMYND12 (ENSMMMG00000002011) #15 PPCS (ENSMMMG00000001992) #16 ENSMMMG00000001948 #17 PPIH (ENSMMMG00000001881) #18 ENSMMMG00000001834 #19 CLDN19 (ENSMMMG00000001817) #20 P3H1 (ENSMMMG00000001705) #21 ENSMMMG00000001687 C1orf50 (ENSMMMG00000001676) #22 ENSMMMG00000001646 #23 ENSMMMG00000001632 #24 ERMAP (ENSMMMG00000001617) #25 ENSMMMG00000001610 #26 SLC2A1 (ENSMMMG00000001574) #27 ENSMMMG00000001535 ENSMMMG00000001503 #28 ENSMMMG00000001489 #31 ENSMMMG00000001478 #32 ENSMMMG00000001460 #33 ENSMMMG00000001451 ##36 EBNA1BP2 (ENSMMMG00000001428) #37 CFAP57 (ENSMMMG00000001332) TMEM125 (ENSMMMG00000001319) C1orf210 (ENSMMMG00000001310) Marmotini_b ANCESTRAL SPECIES ENSGT00940000161401 #7 ENSGT00950000183053.A #8 ENSGT00940000157218.C #9 ENSGT01100000264574 ENSGT00940000154436.b #11 ENSGT00940000154436.a #12 ENSGT00940000160362 #13 ENSGT00390000014577.b #14 ENSGT00390000004248 #15 ENSGT00950000182834.C #16 ENSGT00390000007816 #17 ENSGT00940000154721 #18 ENSGT00940000153341.b.p.a.a.a #19 ENSGT00940000158624 #20 ENSGT00940000158725 #21 ENSGT00390000003084 #22 ENSGT00940000154169.B #23 ENSGT00390000006113 #24 ENSGT00940000160531 #25 ENSGT00940000161958 #26 ENSGT00940000156792 #27 ENSGT00940000160928 #28 ENSGT01090000260044.A.a.b.a.a.a.a.a.a.a #31 ENSGT01090000260044.A.a.b.a.a.a.a.b #32 ENSGT01090000260044.A.a.b.a.a.a.a.a.b #33 ENSGT01090000260044.A.a.b.a.a.a.b #35 ENSGT01090000260044.A.a.b.a.a.b ##36 ENSGT01090000260044.A.a.b.a.a.a.a.a.a.b #36 ENSGT00390000014984 #37 ENSGT00620000088018.h ENSGT00390000003015 Squirrel MODERN SPECIES 74 SCMH1 (ENSSTOG00000013099) FOXO6 (ENSSTOG00000026753) #7 EDN2 (ENSSTOG00000014874) #8 HIVEP3 (ENSSTOG00000014879) #9 GUCA2B (ENSSTOG00000027358) #11 GUCA2A (ENSSTOG00000001891) #12 FOXJ3 (ENSSTOG00000007775) #13 RIMKLA (ENSSTOG00000000109) #14 ZMYND12 (ENSSTOG00000000110) #15 PPCS (ENSSTOG00000000111) #16 ENSSTOG00000000114 #17 PPIH (ENSSTOG00000000115) #18 ENSSTOG00000000116 #19 CLDN19 (ENSSTOG00000000117) #20 P3H1 (ENSSTOG00000000119) #21 C1orf50 (ENSSTOG00000000121) #22 ENSSTOG00000000122 #23 SVBP (ENSSTOG00000024761) #24 ERMAP (ENSSTOG00000000123) #25 ZNF691 (ENSSTOG00000000130) #26 SLC2A1 (ENSSTOG00000021861) #27 ENSSTOG00000021901 #28 ENSSTOG00000020420 #30 ENSSTOG00000027942 #32 ENSSTOG00000009038 #33 ENSSTOG00000022697 #35 ENSSTOG00000027047 ##36 ENSSTOG00000024292 #36 EBNA1BP2 (ENSSTOG00000004747) #37 CFAP57 (ENSSTOG00000022840) TMEM125 (ENSSTOG00000027469) Arctic ground squirrel MODERN SPECIES 454 EDN2 (ENSUPAG00010008968) #8 HIVEP3 (ENSUPAG00010008983) #9 ENSUPAG00010009010 ENSUPAG00010009015 GUCA2B (ENSUPAG00010009046) #11 GUCA2A (ENSUPAG00010009059) #12 FOXJ3 (ENSUPAG00010009073) #13 RIMKLA (ENSUPAG00010009102) #14 ZMYND12 (ENSUPAG00010009127) #15 PPCS (ENSUPAG00010009138) #16 ENSUPAG00010009148 #17 PPIH (ENSUPAG00010009190) #18 ENSUPAG00010009343 CLDN19 (ENSUPAG00010009369) #20 P3H1 (ENSUPAG00010009375) #21 C1orf50 (ENSUPAG00010009420) #22 ENSUPAG00010009432 ENSUPAG00010009441 #23 ENSUPAG00010009461 #24 ERMAP (ENSUPAG00010009463) #25 ZNF691 (ENSUPAG00010009497) #26 SLC2A1 (ENSUPAG00010009500) #27 Hystricomorpha ANCESTRAL SPECIES 4 ENSGT00950000183053.A #8 ENSGT00940000157218.C #9 ENSGT01100000264574 ENSGT00940000154436.b #11 ENSGT00940000154436.a #12 ENSGT00940000160362 #13 ENSGT00390000014577.b #14 ENSGT00390000004248 #15 ENSGT00950000182834.C #16 ENSGT00390000000654 ENSGT00390000007816 #17 ENSGT00940000154721 #18 ENSGT00940000153341.b.p.a.a.a #19 ENSGT00940000158624 #20 ENSGT00940000158725 #21 ENSGT00390000003084 #22 ENSGT00940000154169.B #23 ENSGT00390000006113 #24 ENSGT00940000160531 #25 ENSGT00940000161958 #26 ENSGT00940000156792 #27 ENSGT00940000160928 #28 ENSGT01090000260044.A.a.b.a.a.a.a.a.a.b #36 ENSGT00390000014984 #37 ENSGT00620000088018.h ENSGT00390000003015 ENSGT00510000048988 ENSGT00940000157693 ENSGT00940000161225 ENSGT00950000183104.A.a.a ENSGT01050000244838.H.d Naked mole-rat female DUPLICATION Naked mole-rat female DUPLICATION Naked mole-rat female MODERN SPECIES KIAA0408 (ENSHGLG00000009498) ECHDC1 (ENSHGLG00000034426) RNF146 (ENSHGLG00000018862) RSPO3 (ENSHGLG00000047036) CENPW (ENSHGLG00000045481) TRMT11 (ENSHGLG00000014007) HINT3 (ENSHGLG00000041327) ENSHGLG00000016076 ENSHGLG00000016948 HEY2 (ENSHGLG00000017079) HDDC2 (ENSHGLG00000034250) ENSHGLG00000001350 ENSHGLG00000038009 ENSHGLG00000038906 ENSHGLG00000033903 ENSHGLG00000044736 #22 ENSHGLG00000001275 ENSHGLG00000032242 TRDN (ENSHGLG00000001423) CLVS2 (ENSHGLG00000001622) SMPDL3A (ENSHGLG00000001781) FABP7 (ENSHGLG00000001824) ENSHGLG00000036667 SERINC1 (ENSHGLG00000035221) HSF2 (ENSHGLG00000000864) ENSHGLG00000032930 GJA1 (ENSHGLG00000047888) TBC1D32 (ENSHGLG00000001631) ENSHGLG00000001744 ENSHGLG00000002141 MAN1A1 (ENSHGLG00000002233) Naked mole-rat female MODERN SPECIES 12 MFAP4 (ENSHGLG00000018435) RNF112 (ENSHGLG00000014434) SLC47A1 (ENSHGLG00000008765) ENSHGLG00000011530 ENSHGLG00000039140 ALDH3A2 (ENSHGLG00000004669) ENSHGLG00000005779 ENSHGLG00000021085 ENSHGLG00000047955 ENSHGLG00000015738 ENSHGLG00000015142 ENSHGLG00000044793 ENSHGLG00000011782 ENSHGLG00000013379 ENSHGLG00000038588 ENSHGLG00000040020 #22 ENSHGLG00000018176 TANC2 (ENSHGLG00000015717) CYB561 (ENSHGLG00000011329) ENSHGLG00000032755 ENSHGLG00000035141 DCAF7 (ENSHGLG00000042412) ENSHGLG00000035993 TACO1 (ENSHGLG00000044193) MAP3K3 (ENSHGLG00000017968) ENSHGLG00000032825 STRADA (ENSHGLG00000018908) CCDC47 (ENSHGLG00000006991) DDX42 (ENSHGLG00000010024) FTSJ3 (ENSHGLG00000012282) ENSHGLG00000013190 Naked mole-rat female MODERN SPECIES 26 HIVEP3 (ENSHGLG00000004497) #9 ENSHGLG00000036409 GUCA2B (ENSHGLG00000005936) #11 GUCA2A (ENSHGLG00000038174) #12 ENSHGLG00000045938 FOXJ3 (ENSHGLG00000003548) #13 RIMKLA (ENSHGLG00000006347) #14 PPCS (ENSHGLG00000001315) #16 ZMYND12 (ENSHGLG00000001119) #15 ENSHGLG00000038638 CCDC30 (ENSHGLG00000001543) #17 PPIH (ENSHGLG00000002085) #18 ENSHGLG00000019595 #19 CLDN19 (ENSHGLG00000042448) #20 P3H1 (ENSHGLG00000019499) #21 ENSHGLG00000019491 #22 ENSHGLG00000019496 #23 CCDC23 (ENSHGLG00000039695) #24 ERMAP (ENSHGLG00000041316) #25 ENSHGLG00000002421 #26 SLC2A1 (ENSHGLG00000002559) #27 ENSHGLG00000048449 #31 ENSHGLG00000019963 ##36 ENSHGLG00000003737 ENSHGLG00000035461 #35 ENSHGLG00000050288 #36 ENSHGLG00000042997 EBNA1BP2 (ENSHGLG00000002849) #37 CFAP57 (ENSHGLG00000002959) TMEM125 (ENSHGLG00000003453) ENSHGLG00000003735 Hystricomorpha_a ANCESTRAL SPECIES 1 ENSGT00940000157999 ENSGT00940000161401 #7 ENSGT00950000183053.A #8 ENSGT00940000157218.C #9 ENSGT00940000154436.b #11 ENSGT00940000154436.a #12 ENSGT00940000160362 #13 ENSGT00390000014577.b #14 ENSGT00390000004248 #15 ENSGT00950000182834.C #16 ENSGT00390000007816 #17 ENSGT00940000154721 #18 ENSGT00940000153341.b.p.a.a.a #19 ENSGT00940000158624 #20 ENSGT00940000158725 #21 ENSGT00390000003084 #22 ENSGT00940000154169.B #23 ENSGT00390000006113 #24 ENSGT00940000161958 #26 ENSGT00940000156792 #27 ENSGT00940000160928 #28 ENSGT01090000260044.A.a.b.a.a.a.a.a.a.b #36 ENSGT00390000014984 #37 ENSGT00620000088018.h ENSGT00390000003015 ENSGT00510000048988 ENSGT00940000157693 ENSGT00940000161225 ENSGT00950000183104.A.a.a ENSGT01050000244838.H.d ENSGT00390000011838 Hystricomorpha_b ANCESTRAL SPECIES 90 ENSGT00940000157999 ENSGT00940000161401 #7 ENSGT00950000183053.A #8 ENSGT00940000157218.C #9 ENSGT00940000154436.b #11 ENSGT00940000154436.a #12 ENSGT00940000160362 #13 ENSGT00390000014577.b #14 ENSGT00390000004248 #15 ENSGT00950000182834.C #16 ENSGT00390000007816 #17 ENSGT00940000154721 #18 ENSGT00940000153341.b.p.a.a.a #19 ENSGT00940000158624 #20 ENSGT00940000158725 #21 ENSGT00390000003084 #22 ENSGT00940000154169.B #23 ENSGT00390000006113 #24 ENSGT00940000161958 #26 ENSGT00940000156792 #27 ENSGT00940000160928 #28 ENSGT01090000260044.A.a.b.a.a.a.a.a.a.b #36 ENSGT00390000014984 #37 ENSGT00620000088018.h ENSGT00390000003015 ENSGT00510000048988 ENSGT00940000157693 ENSGT00940000161225 ENSGT00950000183104.A.a.a ENSGT01050000244838.H.d ENSGT00390000011838 Long-tailed chinchilla MODERN SPECIES 244 FOXO6 (ENSCLAG00000002214) #7 EDN2 (ENSCLAG00000002304) #8 HIVEP3 (ENSCLAG00000003048) #9 GUCA2B (ENSCLAG00000003462) #11 GUCA2A (ENSCLAG00000003499) #12 FOXJ3 (ENSCLAG00000004107) #13 RIMKLA (ENSCLAG00000004183) #14 ZMYND12 (ENSCLAG00000004415) #15 PPCS (ENSCLAG00000004488) #16 ENSCLAG00000004515 CCDC30 (ENSCLAG00000004571) #17 PPIH (ENSCLAG00000002063) #18 ENSCLAG00000002253 #19 CLDN19 (ENSCLAG00000002321) #20 P3H1 (ENSCLAG00000002493) #21 C1orf50 (ENSCLAG00000002818) #22 ENSCLAG00000002885 #23 SVBP (ENSCLAG00000003001) #24 ZNF691 (ENSCLAG00000002021) #26 SLC2A1 (ENSCLAG00000002106) #27 ENSCLAG00000002144 #28 ENSCLAG00000017559 #36 EBNA1BP2 (ENSCLAG00000002547) #37 CFAP57 (ENSCLAG00000002618) TMEM125 (ENSCLAG00000003252) C1orf210 (ENSCLAG00000003472) TIE1 (ENSCLAG00000004371) MPL (ENSCLAG00000005179) CDC20 (ENSCLAG00000005417) ELOVL1 (ENSCLAG00000005835) MED8 (ENSCLAG00000006138) Degu MODERN SPECIES 286 HIVEP3 (ENSODEG00000001881) #9 ENSODEG00000018717 GUCA2B (ENSODEG00000001838) #11 GUCA2A (ENSODEG00000001820) #12 FOXJ3 (ENSODEG00000001809) #13 ENSODEG00000001782 RIMKLA (ENSODEG00000001770) #14 ZMYND12 (ENSODEG00000001753) #15 PPCS (ENSODEG00000001735) #16 ENSODEG00000001693 #17 ENSODEG00000001627 #18 ENSODEG00000001592 ##19 CLDN19 (ENSODEG00000001571) #20 P3H1 (ENSODEG00000001470) #21 ENSODEG00000018684 C1orf50 (ENSODEG00000001430) #22 ENSODEG00000001409 #23 SVBP (ENSODEG00000003888) #24 ENSODEG00000019202 #26 ENSODEG00000003864 SLC2A1 (ENSODEG00000003831) #27 ENSODEG00000003794 #28 Guinea pig MODERN SPECIES 133 PRDX1 (ENSCPOG00000014137) MMACHC (ENSCPOG00000014136) TESK2 (ENSCPOG00000012459) ENSCPOG00000033680 TOE1 (ENSCPOG00000036595) MUTYH (ENSCPOG00000012452) HPDL (ENSCPOG00000019649) RIMKLA (ENSCPOG00000005184) #14 ZMYND12 (ENSCPOG00000012992) #15 PPCS (ENSCPOG00000003240) #16 ENSCPOG00000001391 #17 PPIH (ENSCPOG00000008214) #18 ENSCPOG00000010888 #19 CLDN19 (ENSCPOG00000039124) #20 P3H1 (ENSCPOG00000021271) #21 C1orf50 (ENSCPOG00000039943) #22 ENSCPOG00000027098 #23 SVBP (ENSCPOG00000033208) #24 ZNF691 (ENSCPOG00000010765) #26 SLC2A1 (ENSCPOG00000000635) #27 ENSCPOG00000035738 #31 ENSCPOG00000008911 #35 ENSCPOG00000026850 #33 ENSCPOG00000033534 #36 EBNA1BP2 (ENSCPOG00000005187) #37 CFAP57 (ENSCPOG00000007489) TMEM125 (ENSCPOG00000039580) C1orf210 (ENSCPOG00000034493) TIE1 (ENSCPOG00000006080) MPL (ENSCPOG00000006086) CDC20 (ENSCPOG00000006090)