Laurasiatheria	ANCESTRAL SPECIES		ENSGT00940000161136 #7	ENSGT00390000006215 #8	ENSGT00940000161600 #9	ENSGT00950000183094.a #10	ENSGT00390000011497 #11	ENSGT00500000045038 #12	ENSGT00390000018360 #13	ENSGT00390000003103 #14	ENSGT00390000002049.c.a #15	ENSGT00940000156893 #16	ENSGT00950000182907.a.a #17	ENSGT00530000063760.b #18	ENSGT00550000075028 #19	ENSGT00940000159172 #20	ENSGT00940000160276 #21	ENSGT00870000136537 #22	ENSGT00950000182940.b.a.b #23	ENSGT00510000048165 #24	ENSGT00940000153118.db.a.a.b.a.b #25	ENSGT00940000153118.db.a.a.b.a.a #26	ENSGT01100000263575.B.u ##27	ENSGT01100000263504.a.b.b.b.a.b	ENSGT01100000263506.a.e.a.a.b.a ##32	ENSGT00940000153092.a.a.c.a.a	ENSGT01100000263514.A.e.a.b.a.b.a.a.a.b.a.b	ENSGT00940000153125.C	ENSGT01100000263506.a.e.a.a.a.a.b.b ##32	ENSGT00990000203553.c.a.a.a.b	ENSGT01100000263514.A.e.a.b.a.b.a.a.a.a	ENSGT00940000153092.a.a.c.a.b	ENSGT01100000263575.A ##27
Laurasiatheria_a	ANCESTRAL SPECIES		ENSGT00940000161136 #7	ENSGT00390000006215 #8	ENSGT00940000161600 #9	ENSGT00950000183094.a #10	ENSGT00390000011497 #11	ENSGT00500000045038 #12	ENSGT00390000018360 #13	ENSGT00390000003103 #14	ENSGT00390000002049.c.a #15	ENSGT00940000156893 #16	ENSGT00950000182907.a.a #17	ENSGT00530000063760.b #18	ENSGT00550000075028 #19	ENSGT00940000159172 #20	ENSGT00940000160276 #21	ENSGT00870000136537 #22	ENSGT00950000182940.b.a.b #23	ENSGT00510000048165 #24	ENSGT00940000153118.db.a.a.b.a.b #25	ENSGT00940000153118.db.a.a.b.a.a #26	ENSGT01100000263575.A ##27	ENSGT00940000153092.a.a.c.a.b	ENSGT01100000263514.A.e.a.b.a.b.a.a.a.a	ENSGT00990000203553.c.a.a.a.b	ENSGT01100000263575.B.u ##27	ENSGT00940000156302	ENSGT01100000263559.B #31	ENSGT01100000263569.a.b.b	ENSGT00940000164494	ENSGT01060000248528.a.b.a.a.a.b ##30	ENSGT01100000263559.A.f #29
Artiodactyla	ANCESTRAL SPECIES		ENSGT00940000161136 #7	ENSGT00390000006215 #8	ENSGT00940000161600 #9	ENSGT00950000183094.a #10	ENSGT00390000011497 #11	ENSGT00500000045038 #12	ENSGT00390000018360 #13	ENSGT00390000003103 #14	ENSGT00390000002049.c.a #15	ENSGT00940000156893 #16	ENSGT00950000182907.a.a #17	ENSGT00530000063760.b #18	ENSGT00550000075028 #19	ENSGT00940000159172 #20	ENSGT00940000160276 #21	ENSGT00870000136537 #22	ENSGT00950000182940.b.a.b #23	ENSGT00510000048165 #24	ENSGT00940000153118.db.a.a.b.a.b #25	ENSGT00940000153118.db.a.a.b.a.a #26	ENSGT01100000263575.A ##27	ENSGT00940000153092.a.a.c.a.b.b.b	ENSGT01100000263514.A.e.a.b.a.b.a.a.a.a	ENSGT00990000203553.c.a.a.a.b	ENSGT01100000263506.a.e.a.a.b.b ##32	ENSGT01100000263474.a.b.b.e.a.a.a.b	ENSGT00940000153118.db.b ##26	ENSGT01100000263559.B #31	ENSGT01100000263506.a.e.b #32	ENSGT01050000244808.A.b.b.a	ENSGT00950000183190.a.b.a.b #33
Artiodactyla_a	ANCESTRAL SPECIES		ENSGT00940000161136 #7	ENSGT00390000006215 #8	ENSGT00940000161600 #9	ENSGT00950000183094.a #10	ENSGT00390000011497 #11	ENSGT00500000045038 #12	ENSGT00390000018360 #13	ENSGT00390000003103 #14	ENSGT00390000002049.c.a #15	ENSGT00940000156893 #16	ENSGT00950000182907.a.a #17	ENSGT00530000063760.b #18	ENSGT00550000075028 #19	ENSGT00940000159172 #20	ENSGT00940000160276 #21	ENSGT00870000136537 #22	ENSGT00950000182940.b.a.b #23	ENSGT00510000048165 #24	ENSGT00940000153118.db.a.a.b.a.b #25	ENSGT00940000153118.db.a.a.b.a.a #26	ENSGT01100000263575.B.u ##27	ENSGT01100000263506.a.e.a.a.a.a.a ##32	ENSGT01100000263575.B.t.a.a.a ##27	ENSGT00940000156302	ENSGT01100000263559.B #31	ENSGT01100000263569.a.b.b	ENSGT00940000164494	ENSGT01060000248528.a.b.a.a.a.b ##30	ENSGT01100000263559.A.f #29	ENSGT01100000263506.a.e.b #32	ENSGT01050000244808.A.b.b.a
Artiodactyla_b	ANCESTRAL SPECIES		ENSGT00940000161136 #7	ENSGT00390000006215 #8	ENSGT00940000161600 #9	ENSGT00950000183094.a #10	ENSGT00390000011497 #11	ENSGT00500000045038 #12	ENSGT00390000018360 #13	ENSGT00390000003103 #14	ENSGT00390000002049.c.a #15	ENSGT00940000156893 #16	ENSGT00950000182907.a.a #17	ENSGT00530000063760.b #18	ENSGT00550000075028 #19	ENSGT00940000159172 #20	ENSGT00940000160276 #21	ENSGT00870000136537 #22	ENSGT00950000182940.b.a.b #23	ENSGT00510000048165 #24	ENSGT00940000153118.db.a.a.b.a.b #25	ENSGT00940000153118.db.a.a.b.a.a #26	ENSGT01100000263575.B.u ##27	ENSGT01100000263559.A.f #29	ENSGT01060000248528.a.b.a.a.a.b ##30	ENSGT00940000164494	ENSGT01100000263569.a.b.b	ENSGT01100000263559.B #31	ENSGT00940000156302	ENSGT01100000263575.B.t.a.a.a ##27	ENSGT01060000248528.b.jh.b ##30	ENSGT01100000263514.A.e.a.a	ENSGT01100000263506.a.e.b #32
Cetacea	ANCESTRAL SPECIES		ENSGT00940000161136 #7	ENSGT00390000006215 #8	ENSGT00940000161600 #9	ENSGT00950000183094.a #10	ENSGT00390000011497 #11	ENSGT00500000045038 #12	ENSGT00390000018360 #13	ENSGT00390000003103 #14	ENSGT00390000002049.c.a #15	ENSGT00940000156893 #16	ENSGT00950000182907.a.a #17	ENSGT00530000063760.b #18	ENSGT00550000075028 #19	ENSGT00940000159172 #20	ENSGT00940000160276 #21	ENSGT00870000136537 #22	ENSGT00950000182940.b.a.b #23	ENSGT00510000048165 #24	ENSGT00940000153118.db.a.a.b.a.b #25	ENSGT00940000153118.db.a.a.b.a.a #26	ENSGT01100000263575.B.u ##27	ENSGT01100000263559.B #31	ENSGT00940000156302.m.b	ENSGT01100000263575.B.t.a.a.a.a.b ##27	ENSGT01100000263575.B.t.a.a.a.a.a ##27	ENSGT00940000156302.m.a	ENSGT01100000263506.a.e.a.a.a.a.a ##32	ENSGT01060000248528.b.jh.b ##30	ENSGT01100000263559.A.f #29	ENSGT01100000263506.a.e.b #32	ENSGT00950000183190.a.b.a.b #33
Odontoceti	ANCESTRAL SPECIES		ENSGT00940000161136 #7	ENSGT00390000006215 #8	ENSGT00940000161600 #9	ENSGT00950000183094.a #10	ENSGT00390000011497 #11	ENSGT00500000045038 #12	ENSGT00390000018360 #13	ENSGT00390000003103 #14	ENSGT00390000002049.c.a #15	ENSGT00940000156893 #16	ENSGT00950000182907.a.a #17	ENSGT00530000063760.b #18	ENSGT00550000075028 #19	ENSGT00940000159172 #20	ENSGT00940000160276 #21	ENSGT00870000136537 #22	ENSGT00950000182940.b.a.b #23	ENSGT00510000048165 #24	ENSGT00940000153118.db.a.a.b.a.b #25	ENSGT00940000153118.db.a.a.b.a.a #26	ENSGT01100000263575.B.u ##27	ENSGT01100000263559.B #31	ENSGT00940000156302.m.a	ENSGT01100000263575.B.t.a.a.a.a.a ##27	ENSGT01100000263575.B.t.a.a.a.a.b ##27	ENSGT00940000156302.m.b	ENSGT01100000263559.A.f #29	ENSGT01100000263575.B.t.a.a.b #27	ENSGT01100000263506.a.e.b #32	ENSGT00950000183190.a.b.a.b #33	ENSGT00420000029746.f #34
Odontoceti_a	ANCESTRAL SPECIES		ENSGT00940000161136 #7	ENSGT00390000006215 #8	ENSGT00940000161600 #9	ENSGT00950000183094.a #10	ENSGT00390000011497 #11	ENSGT00500000045038 #12	ENSGT00390000018360 #13	ENSGT00390000003103 #14	ENSGT00390000002049.c.a #15	ENSGT00940000156893 #16	ENSGT00950000182907.a.a #17	ENSGT00530000063760.b #18	ENSGT00550000075028 #19	ENSGT00940000159172 #20	ENSGT00940000160276 #21	ENSGT00870000136537 #22	ENSGT00950000182940.b.a.b #23	ENSGT00510000048165 #24	ENSGT00940000153118.db.a.a.b.a.b #25	ENSGT00940000153118.db.a.a.b.a.a #26	ENSGT01100000263575.B.u ##27	ENSGT01100000263559.B #31	ENSGT00940000156302.m.a.b	ENSGT01100000263575.B.t.a.a.a.a.a ##27	ENSGT01100000263575.B.t.a.a.a.a.b ##27	ENSGT00940000156302.m.b	ENSGT01100000263559.A.f #29	ENSGT01100000263506.a.e.b #32	ENSGT00950000183190.a.b.a.b #33	ENSGT00420000029746.f #34	ENSGT00950000183112.b.b #35
Odontoceti_b	ANCESTRAL SPECIES		ENSGT00940000161136 #7	ENSGT00390000006215 #8	ENSGT00940000161600 #9	ENSGT00950000183094.a #10	ENSGT00390000011497 #11	ENSGT00500000045038 #12	ENSGT00390000018360 #13	ENSGT00390000003103 #14	ENSGT00390000002049.c.a #15	ENSGT00940000156893 #16	ENSGT00950000182907.a.a #17	ENSGT00530000063760.b #18	ENSGT00550000075028 #19	ENSGT00940000159172 #20	ENSGT00940000160276 #21	ENSGT00870000136537 #22	ENSGT00950000182940.b.a.b #23	ENSGT00510000048165 #24	ENSGT00940000153118.db.a.a.b.a.b #25	ENSGT00940000153118.db.a.a.b.a.a #26	ENSGT01100000263575.B.u ##27	ENSGT01100000263559.A.f #29	ENSGT00940000156302.m.b	ENSGT01100000263575.B.t.a.a.a.a.b ##27	ENSGT01100000263575.B.t.a.a.a.a.a ##27	ENSGT00940000156302.m.a.b	ENSGT01100000263559.B #31	ENSGT01100000263506.a.e.b #32	ENSGT00950000183190.a.b.a.b #33	ENSGT00420000029746.f #34	ENSGT00950000183112.b.b #35
Monodontidae	ANCESTRAL SPECIES		ENSGT00940000161136 #7	ENSGT00390000006215 #8	ENSGT00940000161600 #9	ENSGT00950000183094.a #10	ENSGT00390000011497 #11	ENSGT00500000045038 #12	ENSGT00390000018360 #13	ENSGT00390000003103 #14	ENSGT00390000002049.c.a #15	ENSGT00940000156893 #16	ENSGT00950000182907.a.a #17	ENSGT00530000063760.b #18	ENSGT00550000075028.w.a #19	ENSGT00940000159172 #20	ENSGT00940000160276 #21	ENSGT00870000136537 #22	ENSGT00950000182940.b.a.b #23	ENSGT00510000048165 #24	ENSGT00940000153118.db.a.a.b.a.b #25	ENSGT00940000153118.db.a.a.b.a.a #26	ENSGT01100000263575.B.t.a.a.b #27	ENSGT01100000263559.A.f #29	ENSGT01060000248528.b.jh.b ##30	ENSGT01100000263506.a.e.a.a.a.a.a ##32	ENSGT01100000263559.B #31	ENSGT01100000263506.a.e.b #32	ENSGT00950000183190.a.b.a.b #33	ENSGT00420000029746.f #34	ENSGT00950000183112.b.b #35	ENSGT00940000158522 #36	ENSGT01060000248645
Narwhal	MODERN SPECIES	304	ADAMTSL4 (ENSMMNG00015004588) #7	ECM1 (ENSMMNG00015004604) #8	TARS2 (ENSMMNG00015004626) #9	RPRD2 (ENSMMNG00015004667) #10	PRPF3 (ENSMMNG00015004709) #11	MRPS21 (ENSMMNG00015004720) #12	CIART (ENSMMNG00015000077) #13	C1orf54 (ENSMMNG00015000118) #14	APH1A (ENSMMNG00015000151) #15	CA14 (ENSMMNG00015000189) #16	ANP32E (ENSMMNG00015000229) #17	PLEKHO1 (ENSMMNG00015000265) #18	ENSMMNG00015000303 #19	OTUD7B (ENSMMNG00015000357) #20	MTMR11 (ENSMMNG00015000420) #21	SF3B4 (ENSMMNG00015000508) #22	SV2A (ENSMMNG00015000538) #23	BOLA1 (ENSMMNG00015000565) #24	H2AC21 (ENSMMNG00015000574) #25	H2AC20 (ENSMMNG00015000583) #26	ENSMMNG00015000589 #27	ENSMMNG00015000597 #28	ENSMMNG00015000609 #29	ENSMMNG00015000624 #30	H3C13 (ENSMMNG00015000641) #31	H2BC18 (ENSMMNG00015000651) #32	ENSMMNG00015000669 #33	ENSMMNG00015000699 #34	HJV (ENSMMNG00015000764) #35	TXNIP (ENSMMNG00015000791) #36	ENSMMNG00015000840 #37
Beluga whale	MODERN SPECIES	99	ECM1 (ENSDLEG00000009658) #9	RPRD2 (ENSDLEG00000009754) #10	PRPF3 (ENSDLEG00000009787) #11	MRPS21 (ENSDLEG00000009817) #12	CIART (ENSDLEG00000009825) #13	ENSDLEG00000009839	APH1A (ENSDLEG00000009850) #15	ENSDLEG00000009879	CA14 (ENSDLEG00000009908) #16	ANP32E (ENSDLEG00000009954) #17	PLEKHO1 (ENSDLEG00000009972) #18	VPS45 (ENSDLEG00000009999) #19	ENSDLEG00000010020 ##19	OTUD7B (ENSDLEG00000010038) #20	MTMR11 (ENSDLEG00000010078) #21	SF3B4 (ENSDLEG00000010135) #22	SV2A (ENSDLEG00000010159) #23	BOLA1 (ENSDLEG00000010185) #24	ENSDLEG00000010198	H2AC21 (ENSDLEG00000010209) #25	ENSDLEG00000010220 ##32	ENSDLEG00000010243 ##30	H3-7 (ENSDLEG00000010255) #29	H2BC18 (ENSDLEG00000010273) #32	ENSDLEG00000010280 #33	ENSDLEG00000010319 #34
Vaquita	MODERN SPECIES		MCL1 (ENSPSNG00000002164)	ADAMTSL4 (ENSPSNG00000002117) #7	ECM1 (ENSPSNG00000002059) #8	TARS2 (ENSPSNG00000001970) #9	RPRD2 (ENSPSNG00000001899) #10	PRPF3 (ENSPSNG00000001838) #11	MRPS21 (ENSPSNG00000001805) #12	CIART (ENSPSNG00000001759) #13	ENSPSNG00000001681 #15	CA14 (ENSPSNG00000001634) #16	ANP32E (ENSPSNG00000001573) #17	PLEKHO1 (ENSPSNG00000001496) #18	VPS45 (ENSPSNG00000001453) #19	OTUD7B (ENSPSNG00000001389) #20	MTMR11 (ENSPSNG00000001321) #21	SF3B4 (ENSPSNG00000001286) #22	SV2A (ENSPSNG00000001263) #23	BOLA1 (ENSPSNG00000001237) #24	H2AC21 (ENSPSNG00000001218) #25	H2AC20 (ENSPSNG00000001208) #26	H2BC21 (ENSPSNG00000001199) ##27	ENSPSNG00000001182 #29	ENSPSNG00000001168	ENSPSNG00000001160 ##27	ENSPSNG00000001148 ##27	ENSPSNG00000001132	ENSPSNG00000001122 #31	H3-7 (ENSPSNG00000001054) #29	H2BC18 (ENSPSNG00000001038) #32	ENSPSNG00000001015 #33	ENSPSNG00000000971 #34
Dolphin	MODERN SPECIES	2133														OTUD7B (ENSTTRG00000005256) #20	MTMR11 (ENSTTRG00000005231) #21	SF3B4 (ENSTTRG00000005217) #22	SV2A (ENSTTRG00000005189) #23	BOLA1 (ENSTTRG00000005176) #24	H2AC21 (ENSTTRG00000005162) #25	H2AC20 (ENSTTRG00000005146) #26	H2BC21 (ENSTTRG00000005143) ##27	H3C14 (ENSTTRG00000005140) #31	ENSTTRG00000005136	ENSTTRG00000005132	ENSTTRG00000005120 ##30	H3-7 (ENSTTRG00000005108) #29	H2BC18 (ENSTTRG00000005097) #32
Sperm whale	MODERN SPECIES	15	ARNT (ENSPCTG00005009289)	CTXND2 (ENSPCTG00005009405)	ENSPCTG00005009425	RPRD2 (ENSPCTG00005009512) #10	PRPF3 (ENSPCTG00005009677) #11	MRPS21 (ENSPCTG00005009845) #12	CIART (ENSPCTG00005009880) #13	C4H1orf54 (ENSPCTG00005009937) #14	APH1A (ENSPCTG00005010018) #15	CA14 (ENSPCTG00005010130) #16	ANP32E (ENSPCTG00005010280) #17	PLEKHO1 (ENSPCTG00005010430) #18	VPS45 (ENSPCTG00005010502) #19	OTUD7B (ENSPCTG00005010704) #20	MTMR11 (ENSPCTG00005010793) #21	SF3B4 (ENSPCTG00005011142) #22	SV2A (ENSPCTG00005011188) #23	BOLA1 (ENSPCTG00005011392) #24	H2AC21 (ENSPCTG00005011410) #25	H2AC20 (ENSPCTG00005011425) #26	ENSPCTG00005011442 #27	ENSPCTG00005011455 #29	ENSPCTG00005011469	ENSPCTG00005011490 ##27	ENSPCTG00005011505 ##27	ENSPCTG00005011520	ENSPCTG00005011537 #31	ENSPCTG00005011561 #34	ENSPCTG00005011661 #33	HJV (ENSPCTG00005011809) #35	TXNIP (ENSPCTG00005011915) #36
Blue whale	MODERN SPECIES		ENSBMSG00010014950	ECM1 (ENSBMSG00010014903) #8	TARS2 (ENSBMSG00010014680) #9	RPRD2 (ENSBMSG00010014508) #10	PRPF3 (ENSBMSG00010014445) #11	MRPS21 (ENSBMSG00010014420) #12	CIART (ENSBMSG00010014384) #13	C1orf54 (ENSBMSG00010014318) #14	ENSBMSG00010014245 #15	CA14 (ENSBMSG00010014191) #16	ANP32E (ENSBMSG00010014047) #17	PLEKHO1 (ENSBMSG00010013986) #18	VPS45 (ENSBMSG00010013898) #19	OTUD7B (ENSBMSG00010004006) #20	MTMR11 (ENSBMSG00010003964) #21	SF3B4 (ENSBMSG00010003943) #22	SV2A (ENSBMSG00010003927) #23	BOLA1 (ENSBMSG00010003920) #24	H2AC21 (ENSBMSG00010003913) #25	H2AC20 (ENSBMSG00010003906) #26	H2BC21 (ENSBMSG00010003899) ##27	ENSBMSG00010003894 #31	ENSBMSG00010003888	ENSBMSG00010003885 ##27	ENSBMSG00010003880 ##27	ENSBMSG00010003874	ENSBMSG00010003866 #31	ENSBMSG00010003857 #30	ENSBMSG00010003847 #31	H2BC18 (ENSBMSG00010003841) #32	ENSBMSG00010003827 #33
Pecora	ANCESTRAL SPECIES	2	ENSGT00940000161136 #7	ENSGT00390000006215 #8	ENSGT00940000161600 #9	ENSGT00950000183094.a #10	ENSGT00390000011497 #11	ENSGT00500000045038 #12	ENSGT00390000018360 #13	ENSGT00390000003103 #14	ENSGT00390000002049.c.a #15	ENSGT00940000156893 #16	ENSGT00950000182907.a.a #17	ENSGT00530000063760.b #18	ENSGT00550000075028 #19	ENSGT00940000159172 #20	ENSGT00940000160276 #21	ENSGT00870000136537 #22	ENSGT00950000182940.b.a.b #23	ENSGT00510000048165 #24	ENSGT00940000153118.db.a.a.b.a.b #25	ENSGT00940000153118.db.a.a.b.a.a #26	ENSGT01100000263575.B.u ##27	ENSGT01100000263559.A.f #29	ENSGT00940000156302	ENSGT01100000263474.a.b.a.d	ENSGT01100000263506.a.e.b #32	ENSGT01050000244808.A.b.b.a	ENSGT00950000183190.a.b.a.b #33	ENSGT00420000029746.f #34	ENSGT00950000183112.b.b #35	ENSGT00940000158522 #36	ENSGT01060000248645
Yarkand deer	DUPLICATION
Yarkand deer	MODERN SPECIES	12	ECM1 (ENSCHYG00000011225) #8	TARS2 (ENSCHYG00000011458) #9	RPRD2 (ENSCHYG00000012167) #10	PRPF3 (ENSCHYG00000012362) #11	ENSCHYG00000012484 #12	CIART (ENSCHYG00000012538) #13	C1orf54 (ENSCHYG00000012611) #14	APH1A (ENSCHYG00000012752) #15	CA14 (ENSCHYG00000012847) #16	ANP32E (ENSCHYG00000012932) #17	ENSCHYG00000013481 #18	VPS45 (ENSCHYG00000013592) #19	OTUD7B (ENSCHYG00000014204) #20	ENSCHYG00000014343	MTMR11 (ENSCHYG00000014428) #21	ENSCHYG00000014732 #22	SV2A (ENSCHYG00000014801) #23	BOLA1 (ENSCHYG00000014998) #24	H2AC21 (ENSCHYG00000015023) #25	H2AC20 (ENSCHYG00000015051) #26	H2BC21 (ENSCHYG00000015088) ##27	ENSCHYG00000015117 #30	H3-7 (ENSCHYG00000015151) #29	H2BC18 (ENSCHYG00000015177) #32	ENSCHYG00000015246 #33	FCGR1A (ENSCHYG00000015523)	ENSCHYG00000015606	HJV (ENSCHYG00000015634) #35	TXNIP (ENSCHYG00000015719) #36	POLR3GL (ENSCHYG00000015898)	ANKRD34A (ENSCHYG00000015933)
Yarkand deer	MODERN SPECIES	14	TST (ENSCHYG00000012199)	MPST (ENSCHYG00000012325)	KCTD17 (ENSCHYG00000012353)	TMPRSS6 (ENSCHYG00000012490)	IL2RB (ENSCHYG00000012820)	C1QTNF6 (ENSCHYG00000012911)	SSTR3 (ENSCHYG00000012943)	RAC2 (ENSCHYG00000012955)	CYTH4 (ENSCHYG00000013017)	MFNG (ENSCHYG00000013114)	CARD10 (ENSCHYG00000013209)	USP18 (ENSCHYG00000013490)	ENSCHYG00000013690	SYT10 (ENSCHYG00000013779)	ENSCHYG00000013851	ENSCHYG00000013913 #22	PKP2 (ENSCHYG00000013933)	YARS2 (ENSCHYG00000014029)	DNM1L (ENSCHYG00000014213)	FGD4 (ENSCHYG00000016143)	ENSCHYG00000016806	ENSCHYG00000004997	BICD1 (ENSCHYG00000005054)	RESF1 (ENSCHYG00000005315)	AMN1 (ENSCHYG00000005389)	ENSCHYG00000005445	DENND5B (ENSCHYG00000005528)	SINHCAF (ENSCHYG00000005811)	CAPRIN2 (ENSCHYG00000005981)	IPO8 (ENSCHYG00000006840)	ENSCHYG00000007292
Percora_a	ANCESTRAL SPECIES	1	ENSGT00940000161136 #7	ENSGT00390000006215 #8	ENSGT00940000161600 #9	ENSGT00950000183094.a #10	ENSGT00390000011497 #11	ENSGT00500000045038 #12	ENSGT00390000018360 #13	ENSGT00390000003103 #14	ENSGT00390000002049.c.a #15	ENSGT00940000156893 #16	ENSGT00950000182907.a.a #17	ENSGT00530000063760.b #18	ENSGT00550000075028 #19	ENSGT00940000159172 #20	ENSGT00940000160276 #21	ENSGT00870000136537 #22	ENSGT00950000182940.b.a.b #23	ENSGT00510000048165 #24	ENSGT00940000153118.db.a.a.b.a.b #25	ENSGT00940000153118.db.a.a.b.a.a #26	ENSGT01100000263575.B.u ##27	ENSGT01100000263559.A.f #29	ENSGT00940000156302	ENSGT01100000263474.a.b.a.d	ENSGT01100000263506.a.e.b #32	ENSGT01050000244808.A.b.b.a	ENSGT00950000183190.a.b.a.b #33	ENSGT00420000029746.f #34	ENSGT00950000183112.b.b #35	ENSGT00940000158522 #36	ENSGT01060000248645
Bovidae	DUPLICATION
Bovidae	ANCESTRAL SPECIES	1	ENSGT00940000161136 #7	ENSGT00390000006215 #8	ENSGT00940000161600 #9	ENSGT00950000183094.a #10	ENSGT00390000011497 #11	ENSGT00500000045038 #12	ENSGT00390000018360 #13	ENSGT00390000003103 #14	ENSGT00390000002049.c.a #15	ENSGT00940000156893 #16	ENSGT00950000182907.a.a #17	ENSGT00530000063760.b #18	ENSGT00550000075028 #19	ENSGT00940000159172 #20	ENSGT00940000160276 #21	ENSGT00870000136537.i #22	ENSGT00950000182940.b.a.b #23	ENSGT00510000048165 #24	ENSGT00940000153118.db.a.a.b.a.b #25	ENSGT00940000153118.db.a.a.b.a.a #26	ENSGT01100000263575.B.u ##27	ENSGT01100000263559.A.f #29	ENSGT00940000156302	ENSGT01100000263474.a.b.a.d	ENSGT01060000248528.a.b.a.a.a.b ##30	ENSGT00940000164494	ENSGT01100000263569.a.b.b	ENSGT01100000263559.B #31	ENSGT01060000248528.b.jh.b ##30	ENSGT01100000263514.A.e.a.a	ENSGT01100000263506.a.e.b #32
Bovinae	ANCESTRAL SPECIES	1	ENSGT00940000161136 #7	ENSGT00390000006215 #8	ENSGT00940000161600 #9	ENSGT00950000183094.a #10	ENSGT00390000011497 #11	ENSGT00500000045038 #12	ENSGT00390000018360 #13	ENSGT00390000003103 #14	ENSGT00390000002049.c.a #15	ENSGT00940000156893 #16	ENSGT00950000182907.a.a #17	ENSGT00530000063760.b #18	ENSGT00550000075028 #19	ENSGT00940000159172 #20	ENSGT00940000160276 #21	ENSGT00870000136537.i #22	ENSGT00950000182940.b.a.b #23	ENSGT00510000048165 #24	ENSGT00940000153118.db.a.a.b.a.b #25	ENSGT00940000153118.db.a.a.b.a.a #26	ENSGT01100000263575.B.u ##27	ENSGT01100000263559.A.f #29	ENSGT00940000156302	ENSGT01100000263506.a.e.a.a.a.a.b.a ##32	ENSGT01100000263506.a.e.b #32	ENSGT01050000244808.A.b.b.a	ENSGT00950000183190.a.b.a.b #33	ENSGT00420000029746.f #34	ENSGT00950000183112.b.b #35	ENSGT00940000158522 #36	ENSGT01060000248645
American bison	MODERN SPECIES	3032	ADAMTSL4 (ENSBBBG00000008423) #7	ECM1 (ENSBBBG00000023801) #8	TARS2 (ENSBBBG00000023752) #9	RPRD2 (ENSBBBG00000023635) #10	PRPF3 (ENSBBBG00000023595) #11	MRPS21 (ENSBBBG00000023564) #12	CIART (ENSBBBG00000023556) #13	C1orf54 (ENSBBBG00000008854) #14	APH1A (ENSBBBG00000023500) #15	CA14 (ENSBBBG00000023456) #16	ENSBBBG00000023424 #17	PLEKHO1 (ENSBBBG00000023413) #18	VPS45 (ENSBBBG00000023405) #19	OTUD7B (ENSBBBG00000023362) #20	MTMR11 (ENSBBBG00000023347) #21	ENSBBBG00000006102 #22	SV2A (ENSBBBG00000023321) #23	ENSBBBG00000023289 #24	ENSBBBG00000023283 #24	H2AC21 (ENSBBBG00000023276) #25	H2AC20 (ENSBBBG00000023272) #26	H2BC21 (ENSBBBG00000008849) ##27	ENSBBBG00000008681 #29	ENSBBBG00000023258	ENSBBBG00000023255 ##32	ENSBBBG00000006078 ##32	ENSBBBG00000023206	ENSBBBG00000023201 ##31	H4C15 (ENSBBBG00000023197) ##30	H3C13 (ENSBBBG00000023194) #31	H2BC18 (ENSBBBG00000023192) #32
Bos	ANCESTRAL SPECIES		ENSGT00390000006215 #8	ENSGT00940000161600 #9	ENSGT00950000183094.a #10	ENSGT01100000263480.a.a.b.a.b.b.b.b.b	ENSGT00390000011497 #11	ENSGT00500000045038 #12	ENSGT00390000018360 #13	ENSGT00390000003103 #14	ENSGT00390000002049.c.a #15	ENSGT00940000156893 #16	ENSGT00950000182907.a.a #17	ENSGT00530000063760.b #18	ENSGT00550000075028 #19	ENSGT00940000159172 #20	ENSGT00940000160276 #21	ENSGT00870000136537.i #22	ENSGT00950000182940.b.a.b #23	ENSGT00510000048165 #24	ENSGT00940000153118.db.a.a.b.a.b #25	ENSGT01100000263575.B.u ##27	ENSGT01100000263559.A.f #29	ENSGT00940000156302	ENSGT00940000153118.db.a.a.b.a.a #26	ENSGT01100000263506.a.e.b #32	ENSGT01050000244808.A.b.b.a	ENSGT00950000183190.a.b.a.b #33	ENSGT00420000029746.f #34	ENSGT00950000183112.b.b #35	ENSGT00940000158522 #36	ENSGT01060000248645	ENSGT00390000012355.B.b
Bos_b	ANCESTRAL SPECIES	1	ENSGT00390000006215 #8	ENSGT00940000161600 #9	ENSGT00950000183094.a #10	ENSGT01100000263480.a.a.b.a.b.b.b.b.b	ENSGT00390000011497 #11	ENSGT00500000045038 #12	ENSGT00390000018360 #13	ENSGT00390000003103 #14	ENSGT00390000002049.c.a #15	ENSGT00940000156893 #16	ENSGT00950000182907.a.a #17	ENSGT00530000063760.b #18	ENSGT00550000075028 #19	ENSGT00940000159172 #20	ENSGT00940000160276 #21	ENSGT00870000136537.i #22	ENSGT00950000182940.b.a.b #23	ENSGT00510000048165 #24	ENSGT00940000153118.db.a.a.b.a.a #26	ENSGT00940000156302	ENSGT01100000263559.A.f #29	ENSGT01100000263506.a.e.b #32	ENSGT01050000244808.A.b.b.a	ENSGT00950000183190.a.b.a.b #33	ENSGT00420000029746.f #34	ENSGT00950000183112.b.b #35	ENSGT00940000158522 #36	ENSGT01060000248645	ENSGT00390000012355.B.b	ENSGT00730000111185	ENSGT01050000244841.A.a.b
Hybrid Bos Indicus	MODERN SPECIES	22	ENSBIXG00005026789	ADAMTSL4 (ENSBIXG00005026752) #7	TARS2 (ENSBIXG00005007645) #9	RPRD2 (ENSBIXG00005004524) #10	ENSBIXG00005026407	PRPF3 (ENSBIXG00005026388) #11	MRPS21 (ENSBIXG00005004483) #12	CIART (ENSBIXG00005026269) #13	APH1A (ENSBIXG00005026181) #15	CA14 (ENSBIXG00005004451) #16	ENSBIXG00005006696 #17	PLEKHO1 (ENSBIXG00005025976) #18	VPS45 (ENSBIXG00005025887) #19	OTUD7B (ENSBIXG00005025620) #20	MTMR11 (ENSBIXG00005004349) #21	ENSBIXG00005004342 #22	SV2A (ENSBIXG00005025476) #23	ENSBIXG00005025435 #24	H2AC20 (ENSBIXG00005025423) #26	ENSBIXG00005004318 ##32	H3-7 (ENSBIXG00005025404) #29	ENSBIXG00005004313 #30	H2BC18 (ENSBIXG00005025377) #32	FCGR1A (ENSBIXG00005025364)	ENSBIXG00005025348 #33	ENSBIXG00005025317 #34	ENSBIXG00005025301 ##34	HJV (ENSBIXG00005006687) #35	TXNIP (ENSBIXG00005025179) #36	POLR3GL (ENSBIXG00005025127)	ANKRD34A (ENSBIXG00005025105)
Cow	MODERN SPECIES	22	ADAMTSL4 (ENSBTAG00000003604) #7	ECM1 (ENSBTAG00000003806) #8	TARS2 (ENSBTAG00000003799) #9	RPRD2 (ENSBTAG00000014984) #10	PRPF3 (ENSBTAG00000013946) #11	MRPS21 (ENSBTAG00000024378) #12	CIART (ENSBTAG00000021487) #13	C3H1orf54 (ENSBTAG00000021485) #14	APH1A (ENSBTAG00000021482) #15	CA14 (ENSBTAG00000021481) #16	ANP32E (ENSBTAG00000016730) #17	PLEKHO1 (ENSBTAG00000004852) #18	VPS45 (ENSBTAG00000020635) #19	OTUD7B (ENSBTAG00000001586) #20	MTMR11 (ENSBTAG00000012496) #21	SF3B4 (ENSBTAG00000012495) #22	SV2A (ENSBTAG00000001599) #23	BOLA1 (ENSBTAG00000006050) #24	H2AC20 (ENSBTAG00000040098)	H2AC21 (ENSBTAG00000032456) #25	ENSBTAG00000050122 ##27	H2AC19 (ENSBTAG00000046003) #26	H4C14 (ENSBTAG00000032453)	H2AC18 (ENSBTAG00000038476)	H3C13 (ENSBTAG00000050881) #29	H2BC18 (ENSBTAG00000032455) #32	FCGR1A (ENSBTAG00000008592)	ENSBTAG00000037565 #33	MGC134040 (ENSBTAG00000022741) #34	HJV (ENSBTAG00000021823) #35	TXNIP (ENSBTAG00000020060) #36
Bos_a	ANCESTRAL SPECIES	47	ENSGT00390000006215 #8	ENSGT00940000161600 #9	ENSGT00950000183094.a #10	ENSGT01100000263480.a.a.b.a.b.b.b.b.b	ENSGT00390000011497 #11	ENSGT00500000045038 #12	ENSGT00390000018360 #13	ENSGT00390000003103 #14	ENSGT00390000002049.c.a #15	ENSGT00940000156893 #16	ENSGT00950000182907.a.a #17	ENSGT00530000063760.b #18	ENSGT00550000075028 #19	ENSGT00940000159172 #20	ENSGT00940000160276 #21	ENSGT00870000136537.i #22	ENSGT00950000182940.b.a.b #23	ENSGT00510000048165 #24	ENSGT00940000153118.db.a.a.b.a.b #25	ENSGT00940000153118.db.a.a.b.a.a #26	ENSGT01100000263575.B.u ##27	ENSGT01100000263559.A.f #29	ENSGT00940000156302
Domestic yak	MODERN SPECIES	22	ENSBGRG00000000495	RPRD2 (ENSBGRG00000000422) #10	ENSBGRG00000000401	PRPF3 (ENSBGRG00000000360) #11	MRPS21 (ENSBGRG00000000322) #12	CIART (ENSBGRG00000000285) #13	C1orf54 (ENSBGRG00000000272) #14	APH1A (ENSBGRG00000000249) #15	CA14 (ENSBGRG00000000220) #16	ENSBGRG00000017224	ENSBGRG00000017198 #17	PLEKHO1 (ENSBGRG00000017135) #18	VPS45 (ENSBGRG00000016926) #19	OTUD7B (ENSBGRG00000016856) #20	MTMR11 (ENSBGRG00000016764) #21	ENSBGRG00000016698 #22	SV2A (ENSBGRG00000016418) #23	ENSBGRG00000016367	H2AC21 (ENSBGRG00000016349) #25	H2AC20 (ENSBGRG00000016331) #26	H2BC21 (ENSBGRG00000016302) ##27	ENSBGRG00000016266 #29	ENSBGRG00000016242 #31	ENSBGRG00000016186 ##32	ENSBGRG00000016162 ##32	ENSBGRG00000016148	ENSBGRG00000016136 #29	ENSBGRG00000016114 #29	H2BC18 (ENSBGRG00000016034) #32	FCGR1A (ENSBGRG00000015945)	ENSBGRG00000015767
Wild yak	MODERN SPECIES	688	ADAMTSL4 (ENSBMUG00000023675) #7	ECM1 (ENSBMUG00000023627) #8	TARS2 (ENSBMUG00000023540) #9	RPRD2 (ENSBMUG00000023488) #10	PRPF3 (ENSBMUG00000023465) #11	MRPS21 (ENSBMUG00000023447) #12	CIART (ENSBMUG00000023439) #13	C1orf54 (ENSBMUG00000023423) #14	APH1A (ENSBMUG00000023411) #15	CA14 (ENSBMUG00000023394) #16	ENSBMUG00000023376 #17	PLEKHO1 (ENSBMUG00000023366) #18	VPS45 (ENSBMUG00000023335) #19	OTUD7B (ENSBMUG00000023313) #20	MTMR11 (ENSBMUG00000023303) #21	ENSBMUG00000023291 #22	SV2A (ENSBMUG00000023283) #23	BOLA1 (ENSBMUG00000023276) #24	H2AC21 (ENSBMUG00000023258) #25	ENSBMUG00000023246 ##26
Caprinae	ANCESTRAL SPECIES	2	ENSGT00940000161136 #7	ENSGT00390000006215 #8	ENSGT00940000161600 #9	ENSGT00950000183094.a #10	ENSGT00390000011497 #11	ENSGT00500000045038 #12	ENSGT00390000018360 #13	ENSGT00390000003103 #14	ENSGT00390000002049.c.a #15	ENSGT00940000156893 #16	ENSGT00950000182907.a.a #17	ENSGT00530000063760.b #18	ENSGT00550000075028 #19	ENSGT00940000159172 #20	ENSGT00940000160276 #21	ENSGT00870000136537.i #22	ENSGT00950000182940.b.a.b #23	ENSGT00510000048165 #24	ENSGT00940000153118.db.a.a.b.a.b #25	ENSGT00940000153118.db.a.a.b.a.a #26	ENSGT01100000263575.B.u ##27	ENSGT01100000263559.B #31	ENSGT01100000263506.a.e.b #32	ENSGT01050000244808.A.b.b.a	ENSGT00950000183190.a.b.a.b #33	ENSGT00420000029746.f #34	ENSGT00950000183112.b.b #35	ENSGT00940000158522 #36	ENSGT01060000248645	ENSGT00390000012355.B.b	ENSGT00390000005869.a
Goat	MODERN SPECIES	22	ENSCHIG00000011166	ENSCHIG00000025006	ECM1 (ENSCHIG00000010881) #8	TARS2 (ENSCHIG00000018559) #9	RPRD2 (ENSCHIG00000023733) #10	PRPF3 (ENSCHIG00000015434) #11	MRPS21 (ENSCHIG00000021516) #12	CIART (ENSCHIG00000001297) #13	APH1A (ENSCHIG00000015526) #15	CA14 (ENSCHIG00000024032) #16	ANP32E (ENSCHIG00000002759) #17	PLEKHO1 (ENSCHIG00000022413) #18	VPS45 (ENSCHIG00000010595) #19	OTUD7B (ENSCHIG00000020643) #20	MTMR11 (ENSCHIG00000021928) #21	ENSCHIG00000025663 #22	SV2A (ENSCHIG00000017231) #23	BOLA1 (ENSCHIG00000023087) #24	H2AC21 (ENSCHIG00000006209) #25	H2AC20 (ENSCHIG00000010392) #26	H2BC21 (ENSCHIG00000012955) ##27	ENSCHIG00000010054 #31	ENSCHIG00000022263 #26	ENSCHIG00000007823 ##27	ENSCHIG00000013722 ##27	ENSCHIG00000008044 #26	ENSCHIG00000013241 #29	ENSCHIG00000009699 #30	ENSCHIG00000010234 #29	H2BC18 (ENSCHIG00000007673) #32	FCGR1A (ENSCHIG00000027141)
Rambouillet Sheep	MODERN SPECIES		ADAMTSL4 (ENSOARG00020008616) #7	ECM1 (ENSOARG00020008539) #8	TARS2 (ENSOARG00020008324) #9	RPRD2 (ENSOARG00020008088) #10	PRPF3 (ENSOARG00020007961) #11	MRPS21 (ENSOARG00020007924) #12	CIART (ENSOARG00020007852) #13	C1orf54 (ENSOARG00020007824) #14	APH1A (ENSOARG00020007706) #15	CA14 (ENSOARG00020007644) #16	ENSOARG00020007614 #17	PLEKHO1 (ENSOARG00020007594) #18	VPS45 (ENSOARG00020007445) #19	OTUD7B (ENSOARG00020007348) #20	MTMR11 (ENSOARG00020007236) #21	SF3B4 (ENSOARG00020007183) #22	SV2A (ENSOARG00020007009) #23	BOLA1 (ENSOARG00020006951) #24	HIST2H2AB (ENSOARG00020006921) #25	HIST2H2AC (ENSOARG00020006891) #26	HIST2H2BE (ENSOARG00020006877) ##27	ENSOARG00020006850 #31	ENSOARG00020006832	ENSOARG00020006810	ENSOARG00020006796 ##27	ENSOARG00020006772	ENSOARG00020006745 #29	ENSOARG00020006725 #30	H3-7 (ENSOARG00020006703) #29	H2BC18 (ENSOARG00020006656) #32	FCGR1A (ENSOARG00020006588)
Bovidae	ANCESTRAL SPECIES																	ENSGT00870000136537.j #22
Bovinae	ANCESTRAL SPECIES	10	ENSGT00880000138031	ENSGT00940000158187	ENSGT00940000158037	ENSGT00940000159389	ENSGT00940000158600	ENSGT00940000155166.A	ENSGT00390000016813	ENSGT00940000155118.o	ENSGT00940000154612.m.a.c	ENSGT00940000155067.a	ENSGT00940000158254	ENSGT00950000183117.a.a	ENSGT00390000000062.x.a	ENSGT00390000006747	ENSGT01030000234578.B.a	ENSGT00870000136537.j #22	ENSGT00390000014084.z	ENSGT00550000074935.z	ENSGT00390000010777	ENSGT00390000006088	ENSGT00390000004984	ENSGT00960000189116	ENSGT00940000159081	ENSGT00950000182885.B	ENSGT00940000162483	ENSGT00940000156566	ENSGT00940000158637	ENSGT00530000064216	ENSGT01020000230401.b.a	ENSGT00390000007685	ENSGT00390000000987
American bison	MODERN SPECIES	3241					ANO4 (ENSBBBG00000001376)	SLC5A8 (ENSBBBG00000001338)	UTP20 (ENSBBBG00000001252)	ARL1 (ENSBBBG00000015342)	ENSBBBG00000003821	SPIC (ENSBBBG00000015354)	MYBPC1 (ENSBBBG00000015658)	CHPT1 (ENSBBBG00000015683)	SYCP3 (ENSBBBG00000002637)	GNPTAB (ENSBBBG00000015731)	DRAM1 (ENSBBBG00000015747)	ENSBBBG00000015751 #22	WASHC3 (ENSBBBG00000015771)	ENSBBBG00000015783	NUP37 (ENSBBBG00000015803)	PARPBP (ENSBBBG00000003942)	PMCH (ENSBBBG00000015856)	ENSBBBG00000015861	IGF1 (ENSBBBG00000015932)	PAH (ENSBBBG00000015967)	ASCL1 (ENSBBBG00000003978)	STAB2 (ENSBBBG00000003988)	NT5DC3 (ENSBBBG00000016072)	ENSBBBG00000016093	HSP90B1 (ENSBBBG00000016125)	UQCC6 (ENSBBBG00000016141)	TDG (ENSBBBG00000016156)
Bos	ANCESTRAL SPECIES	2	ENSGT00880000138031	ENSGT00940000158187	ENSGT00940000158037	ENSGT00940000159389	ENSGT00940000158600.d	ENSGT00940000155166.A	ENSGT00390000016813	ENSGT00940000155118.o	ENSGT00940000154612.m.a.c	ENSGT00940000155067.a	ENSGT00940000158254	ENSGT00950000183117.a.a	ENSGT00390000000062.x.a	ENSGT00390000006747	ENSGT01030000234578.B.a	ENSGT00870000136537.j #22	ENSGT00390000014084.z	ENSGT00550000074935.z	ENSGT00390000010777	ENSGT00390000006088	ENSGT00390000004984.d	ENSGT00960000189116	ENSGT00940000159081	ENSGT00950000182885.B	ENSGT00940000162483	ENSGT00940000156566	ENSGT00940000158637	ENSGT00530000064216	ENSGT01020000230401.b.a	ENSGT00390000007685	ENSGT00390000000987
Bos_a	ANCESTRAL SPECIES	3	ENSGT00880000138031	ENSGT00940000158187	ENSGT00940000158037	ENSGT00940000159389	ENSGT00940000158600.d	ENSGT00940000155166.A	ENSGT00390000016813	ENSGT00940000155118.o	ENSGT00940000154612.m.a.c	ENSGT00940000155067.a	ENSGT00940000158254	ENSGT00950000183117.a.a	ENSGT00390000000062.x.a	ENSGT00390000006747	ENSGT01030000234578.B.a	ENSGT00870000136537.j #22	ENSGT00390000014084.z	ENSGT00550000074935.z	ENSGT00390000010777	ENSGT00390000006088	ENSGT00390000004984.d	ENSGT00960000189116	ENSGT00940000159081	ENSGT00950000182885.B	ENSGT00940000162483	ENSGT00940000156566	ENSGT00940000158637	ENSGT00530000064216	ENSGT01020000230401.b.a	ENSGT00390000007685	ENSGT00390000000987
Wild yak	MODERN SPECIES	1023						SLC5A8 (ENSBMUG00000009096)	UTP20 (ENSBMUG00000009150)	ARL1 (ENSBMUG00000009188)	ENSBMUG00000009199	ENSBMUG00000009206	MYBPC1 (ENSBMUG00000009435)	CHPT1 (ENSBMUG00000009579)	SYCP3 (ENSBMUG00000009634)	GNPTAB (ENSBMUG00000009686)	DRAM1 (ENSBMUG00000009731)	ENSBMUG00000009753 #22	WASHC3 (ENSBMUG00000009774)	NUP37 (ENSBMUG00000009802)	ENSBMUG00000009814	PARPBP (ENSBMUG00000009860)	PMCH (ENSBMUG00000009881)	ENSBMUG00000009885	IGF1 (ENSBMUG00000009930)	PAH (ENSBMUG00000009991)
Domestic yak	MODERN SPECIES	24	SLC17A8 (ENSBGRG00000003178)	ENSBGRG00000003155	NR1H4 (ENSBGRG00000003123)	GAS2L3 (ENSBGRG00000003088)	ANO4 (ENSBGRG00000002904)	SLC5A8 (ENSBGRG00000002819)	UTP20 (ENSBGRG00000002781)	ARL1 (ENSBGRG00000002671)	ENSBGRG00000002653	ENSBGRG00000002632	MYBPC1 (ENSBGRG00000001036)	CHPT1 (ENSBGRG00000000795)	SYCP3 (ENSBGRG00000000767)	GNPTAB (ENSBGRG00000000629)	DRAM1 (ENSBGRG00000000571)	ENSBGRG00000000545 #22	WASHC3 (ENSBGRG00000000463)	ENSBGRG00000000441	NUP37 (ENSBGRG00000000415)	PARPBP (ENSBGRG00000000381)	PMCH (ENSBGRG00000000355)	ENSBGRG00000000346	IGF1 (ENSBGRG00000000290)	PAH (ENSBGRG00000021190)	ENSBGRG00000021133	ENSBGRG00000021085	ENSBGRG00000021065	STAB2 (ENSBGRG00000020546)	NT5DC3 (ENSBGRG00000020334)	ENSBGRG00000020117	HSP90B1 (ENSBGRG00000020036)
Bos_b	ANCESTRAL SPECIES	22	ENSGT00880000138031	ENSGT00940000158187	ENSGT00940000158037	ENSGT00940000159389	ENSGT00940000158600.d	ENSGT00940000155166.A	ENSGT00390000016813	ENSGT00940000155118.o	ENSGT00940000154612.m.a.c	ENSGT00940000155067.a	ENSGT00940000158254	ENSGT00950000183117.a.a	ENSGT00390000000062.x.a	ENSGT00390000006747	ENSGT01030000234578.B.a	ENSGT00870000136537.j #22	ENSGT00390000014084.z	ENSGT00550000074935.z	ENSGT00390000010777	ENSGT00390000006088	ENSGT00390000004984.d	ENSGT00960000189116	ENSGT00940000159081	ENSGT00950000182885.B	ENSGT00940000162483	ENSGT00940000156566	ENSGT00940000158637	ENSGT00530000064216	ENSGT01020000230401.b.a	ENSGT00390000007685	ENSGT00390000000987
Cow	MODERN SPECIES	24	SLC17A8 (ENSBTAG00000001088)	NR1H4 (ENSBTAG00000013596)	GAS2L3 (ENSBTAG00000049308)	ANO4 (ENSBTAG00000004145)	SLC5A8 (ENSBTAG00000011525)	UTP20 (ENSBTAG00000003239)	ARL1 (ENSBTAG00000011883)	ENSBTAG00000008020	SPIC (ENSBTAG00000009904)	MYBPC1 (ENSBTAG00000011392)	ENSBTAG00000048643	CHPT1 (ENSBTAG00000002490)	SYCP3 (ENSBTAG00000002492)	GNPTAB (ENSBTAG00000019409)	DRAM1 (ENSBTAG00000017287)	ENSBTAG00000012793 #22	WASHC3 (ENSBTAG00000000021)	NUP37 (ENSBTAG00000000022)	PARPBP (ENSBTAG00000039709)	PMCH (ENSBTAG00000013008)	ENSBTAG00000051413	IGF1 (ENSBTAG00000011082)	ENSBTAG00000049055	PAH (ENSBTAG00000012794)	ASCL1 (ENSBTAG00000016227)	STAB2 (ENSBTAG00000006010)	NT5DC3 (ENSBTAG00000006013)	TTC41 (ENSBTAG00000027899)	HSP90B1 (ENSBTAG00000003362)	UQCC6 (ENSBTAG00000048280)	TDG (ENSBTAG00000021633)
Hybrid Bos Indicus	MODERN SPECIES	24	ANO4 (ENSBIXG00005003189)	ENSBIXG00005019628	SLC5A8 (ENSBIXG00005019682)	ENSBIXG00005019697	UTP20 (ENSBIXG00005003225)	ARL1 (ENSBIXG00005019884)	ENSBIXG00005003254	SPIC (ENSBIXG00005019938)	ENSBIXG00005019949	MYBPC1 (ENSBIXG00005020157)	CHPT1 (ENSBIXG00005020232)	SYCP3 (ENSBIXG00005003378)	ENSBIXG00005020255	GNPTAB (ENSBIXG00005020278)	DRAM1 (ENSBIXG00005020313)	ENSBIXG00005003426 #22	WASHC3 (ENSBIXG00005020384)	ENSBIXG00005020399	NUP37 (ENSBIXG00005003453)	PARPBP (ENSBIXG00005020483)	ENSBIXG00005020521	ENSBIXG00005020545	IGF1 (ENSBIXG00005007345)	PAH (ENSBIXG00005007158)	ASCL1 (ENSBIXG00005021003)	STAB2 (ENSBIXG00005021254)	NT5DC3 (ENSBIXG00005021303)	ENSBIXG00005021359	HSP90B1 (ENSBIXG00005021407)	UQCC6 (ENSBIXG00005021438)	TDG (ENSBIXG00005021462)
Caprinae	ANCESTRAL SPECIES																	ENSGT00870000136537.j #22
Goat	MODERN SPECIES	17	ENSCHIG00000010110	CEP20 (ENSCHIG00000024326)	MYH11 (ENSCHIG00000010603)	NDE1 (ENSCHIG00000023722)	MARF1 (ENSCHIG00000008560)	BMERB1 (ENSCHIG00000018943)	MPV17L (ENSCHIG00000022987)	PDXDC1 (ENSCHIG00000009960)	ENSCHIG00000014915	RRN3 (ENSCHIG00000014990)	ENSCHIG00000015259	PLA2G10 (ENSCHIG00000011377)	BFAR (ENSCHIG00000014101)	PARN (ENSCHIG00000018143)	MRTFB (ENSCHIG00000018957)	ENSCHIG00000006654 #22	ERCC4 (ENSCHIG00000022561)	SHISA9 (ENSCHIG00000008483)	CPPED1 (ENSCHIG00000019325)	ENSCHIG00000026229	SNX29 (ENSCHIG00000022008)	ENSCHIG00000023282	TNFRSF17 (ENSCHIG00000014875)	GSPT1 (ENSCHIG00000009274)	ENSCHIG00000018658	ENSCHIG00000007743	ZC3H7A (ENSCHIG00000006568)	TXNDC11 (ENSCHIG00000019483)	SNN (ENSCHIG00000011379)	ENSCHIG00000002368	LITAF (ENSCHIG00000014017)
Siberian musk deer	MODERN SPECIES	247	ADAMTSL4 (ENSMMSG00000019809) #7	ECM1 (ENSMMSG00000019915) #8	TARS2 (ENSMMSG00000019987) #9	RPRD2 (ENSMMSG00000020110) #10	PRPF3 (ENSMMSG00000020222) #11	MRPS21 (ENSMMSG00000020328) #12	CIART (ENSMMSG00000020350) #13	C1orf54 (ENSMMSG00000020377) #14	APH1A (ENSMMSG00000020404) #15	CA14 (ENSMMSG00000020490) #16	ANP32E (ENSMMSG00000020532) #17	PLEKHO1 (ENSMMSG00000020759) #18	VPS45 (ENSMMSG00000020801) #19	OTUD7B (ENSMMSG00000020949) #20	MTMR11 (ENSMMSG00000020972) #21	SF3B4 (ENSMMSG00000021043) #22	SV2A (ENSMMSG00000021080) #23	BOLA1 (ENSMMSG00000021162) #24	H2AC21 (ENSMMSG00000021172) #25	H2AC20 (ENSMMSG00000021185) #26	H2BC21 (ENSMMSG00000021195) ##27	ENSMMSG00000021208 #29	ENSMMSG00000013230	ENSMMSG00000013235 ##32	ENSMMSG00000013242 #30	H3-7 (ENSMMSG00000013251) #29	H2BC18 (ENSMMSG00000013260) #32	ENSMMSG00000013270 #33	ENSMMSG00000013282	ENSMMSG00000013290	ENSMMSG00000013298 #34
Camelidae	ANCESTRAL SPECIES	6	ENSGT00940000161136 #7	ENSGT00390000006215 #8	ENSGT00940000161600 #9	ENSGT00950000183094.a #10	ENSGT00390000011497 #11	ENSGT00500000045038 #12	ENSGT00390000018360 #13	ENSGT00390000003103 #14	ENSGT00390000002049.c.a #15	ENSGT00940000156893 #16	ENSGT00950000182907.a.a #17	ENSGT00530000063760.b #18	ENSGT00550000075028 #19	ENSGT00940000159172 #20	ENSGT00940000160276 #21	ENSGT00870000136537 #22	ENSGT00950000182940.b.a.b #23	ENSGT00510000048165 #24	ENSGT00940000153118.db.a.a.b.a.b #25	ENSGT00940000153118.db.a.a.b.a.a #26	ENSGT01100000263506.a.e.a.a.a.a.a.b ##32	ENSGT01100000263559.B #31	ENSGT01100000263559.A.f #29	ENSGT01100000263506.a.e.b #32	ENSGT01050000244808.A.b.b.a	ENSGT00950000183190.a.b.a.b #33	ENSGT00420000029746.f #34	ENSGT00950000183112.b.b #35	ENSGT00940000158522 #36	ENSGT01060000248645	ENSGT00390000012355.B.b
Arabian camel	MODERN SPECIES	13	ADAMTSL4 (ENSCDRG00005017304) #7	ECM1 (ENSCDRG00005017209) #8	TARS2 (ENSCDRG00005017096) #9	RPRD2 (ENSCDRG00005016821) #10	PRPF3 (ENSCDRG00005016744) #11	ENSCDRG00005016696 #12	CIART (ENSCDRG00005016658) #13	ENSCDRG00005016574 #14	APH1A (ENSCDRG00005016465) #15	CA14 (ENSCDRG00005016386) #16	ANP32E (ENSCDRG00005016234) #17	PLEKHO1 (ENSCDRG00005016174) #18	VPS45 (ENSCDRG00005016029) #19	OTUD7B (ENSCDRG00005015982) #20	MTMR11 (ENSCDRG00005015753) #21	SF3B4 (ENSCDRG00005015698) #22	SV2A (ENSCDRG00005015609) #23	BOLA1 (ENSCDRG00005015588) #24	H2AC21 (ENSCDRG00005015577) #25	H2AC20 (ENSCDRG00005015569) #26	ENSCDRG00005015337 ##27	ENSCDRG00005015322 ##32	ENSCDRG00005015313 #31	ENSCDRG00005015303 #30	ENSCDRG00005015297 #31	H2BC18 (ENSCDRG00005015267) #32	FCGR1A (ENSCDRG00005015157)	ENSCDRG00005015110 #33	ENSCDRG00005015029 #34	HJV (ENSCDRG00005014941) #35	TXNIP (ENSCDRG00005014863) #36
Alpaca	MODERN SPECIES	2205															ENSVPAG00000008154 #21	SF3B4 (ENSVPAG00000008152) #22	SV2A (ENSVPAG00000008149) #23	BOLA1 (ENSVPAG00000008148) #24	H2AC21 (ENSVPAG00000008146) #25
Suina	ANCESTRAL SPECIES	8	ENSGT00940000161136 #7	ENSGT00390000006215 #8	ENSGT00940000161600 #9	ENSGT00950000183094.a #10	ENSGT00390000011497 #11	ENSGT00500000045038 #12	ENSGT00390000018360 #13	ENSGT00390000003103 #14	ENSGT00390000002049.c.a #15	ENSGT00940000156893 #16	ENSGT00950000182907.a.a #17	ENSGT00530000063760.b #18	ENSGT00550000075028 #19	ENSGT00940000159172 #20	ENSGT00940000160276 #21	ENSGT00870000136537 #22	ENSGT00950000182940.b.a.b #23	ENSGT00510000048165 #24	ENSGT00940000153118.db.a.a.b.a.b #25	ENSGT00940000153118.db.a.a.b.a.a #26	ENSGT01100000263575.B.u ##27	ENSGT01100000263559.B #31	ENSGT00940000153118.db.b ##26	ENSGT01100000263575.A ##27	ENSGT00940000156302	ENSGT01100000263559.A.f #29	ENSGT00940000163082	ENSGT01100000263517.b.d.m.a.a.b	ENSGT01060000248528.b.kh.yb #30	ENSGT01100000263474.a.b.a.d	ENSGT00940000163525
Pig	MODERN SPECIES	12	ADAMTSL4 (ENSSSCG00000006651) #7	ECM1 (ENSSSCG00000029230) #8	TARS2 (ENSSSCG00000026395) #9	RPRD2 (ENSSSCG00000030291) #10	PRPF3 (ENSSSCG00000030119) #11	ENSSSCG00000052263 #12	CIART (ENSSSCG00000038374) #13	C1orf54 (ENSSSCG00000045950) #14	APH1A (ENSSSCG00000028297) #15	CA14 (ENSSSCG00000027875) #16	ANP32E (ENSSSCG00000035209) #17	PLEKHO1 (ENSSSCG00000022784) #18	VPS45 (ENSSSCG00000006661) #19	OTUD7B (ENSSSCG00000006663) #20	MTMR11 (ENSSSCG00000006664) #21	SF3B4 (ENSSSCG00000006665) #22	SV2A (ENSSSCG00000006666) #23	BOLA1 (ENSSSCG00000006667) #24	H2AC21 (ENSSSCG00000063420) #25	H2AC20 (ENSSSCG00000034598) #26	ENSSSCG00000047083 ##27	ENSSSCG00000053902 #31	ENSSSCG00000057447	H2BC21 (ENSSSCG00000060759) ##27	ENSSSCG00000055629 ##27	ENSSSCG00000057512	H3C14 (ENSSSCG00000063270) #29	ENSSSCG00000059426 #30	H2BC18 (ENSSSCG00000062160) #32	FCGR1A (ENSSSCG00000006678)	ENSSSCG00000006679 #33
Chacoan peccary	MODERN SPECIES	29	ECM1 (ENSCWAG00000008573) #8	TARS2 (ENSCWAG00000008672) #9	RPRD2 (ENSCWAG00000008913) #10	PRPF3 (ENSCWAG00000008995) #11	MRPS21 (ENSCWAG00000009071) #12	CIART (ENSCWAG00000009100) #13	C1orf54 (ENSCWAG00000009306) #14	APH1A (ENSCWAG00000009346) #15	CA14 (ENSCWAG00000009438) #16	ANP32E (ENSCWAG00000009540) #17	PLEKHO1 (ENSCWAG00000009593) #18	VPS45 (ENSCWAG00000009712) #19	ENSCWAG00000009861	OTUD7B (ENSCWAG00000009903) #20	MTMR11 (ENSCWAG00000009987) #21	SF3B4 (ENSCWAG00000010291) #22	SV2A (ENSCWAG00000010325) #23	BOLA1 (ENSCWAG00000010457) #24	H2AC21 (ENSCWAG00000010470) #25	H2AC20 (ENSCWAG00000010494) #26	H2BC21 (ENSCWAG00000010520) ##27	H3C15 (ENSCWAG00000010535) #31	ENSCWAG00000010555 ##26	ENSCWAG00000010575	ENSCWAG00000010582 #30	H2BC18 (ENSCWAG00000010598) #32	ENSCWAG00000010635	ENSCWAG00000010702 #33	ENSCWAG00000010758 #34	HJV (ENSCWAG00000010824) #35	TXNIP (ENSCWAG00000010902) #36
Laurasiatheria_b	ANCESTRAL SPECIES		ENSGT00940000161136 #7	ENSGT00390000006215 #8	ENSGT00940000161600 #9	ENSGT00950000183094.a #10	ENSGT00390000011497 #11	ENSGT00500000045038 #12	ENSGT00390000018360 #13	ENSGT00390000003103 #14	ENSGT00390000002049.c.a #15	ENSGT00940000156893 #16	ENSGT00950000182907.a.a #17	ENSGT00530000063760.b #18	ENSGT00550000075028 #19	ENSGT00940000159172 #20	ENSGT00940000160276 #21	ENSGT00870000136537 #22	ENSGT00950000182940.b.a.b #23	ENSGT00510000048165 #24	ENSGT00940000153118.db.a.a.b.a.b #25	ENSGT00940000153118.db.a.a.b.a.a #26	ENSGT01100000263575.A ##27	ENSGT00940000153092.a.a.c.a.b	ENSGT01100000263504.a.b.b.b.b	ENSGT00990000203553.c.a.b	ENSGT01100000263506.a.e.a.a.a.b.a.a.a ##32	ENSGT01060000248528.b.jh.b ##30	ENSGT00940000155501.a.b	ENSGT01100000263514.A.e.a.b.a.b.a.a.b	ENSGT01100000263514.A.e.a.b.b	ENSGT01100000263514.A.e.a.b.a.b.a.a.a.b.a.a.a.a	ENSGT00940000153092.a.a.c.a.a
Laurasiatheria_c	ANCESTRAL SPECIES		ENSGT00940000161136 #7	ENSGT00390000006215 #8	ENSGT00940000161600 #9	ENSGT00950000183094.a #10	ENSGT00390000011497 #11	ENSGT00500000045038 #12	ENSGT00390000018360 #13	ENSGT00390000003103 #14	ENSGT00390000002049.c.a #15	ENSGT00940000156893 #16	ENSGT00950000182907.a.a #17	ENSGT00530000063760.b #18	ENSGT00550000075028 #19	ENSGT00940000159172 #20	ENSGT00940000160276 #21	ENSGT00870000136537 #22	ENSGT00950000182940.b.a.b #23	ENSGT00510000048165 #24	ENSGT00940000153118.db.a.a.b.a.b #25	ENSGT00940000153118.db.a.a.b.a.a #26	ENSGT01100000263506.a.e.a.b ##32	ENSGT01100000263559.B #31	ENSGT01100000263575.A ##27	ENSGT00940000156302	ENSGT01100000263575.B.u ##27	ENSGT00940000153125.D.a.a	ENSGT01100000263559.A.f #29	ENSGT01100000263506.a.e.b #32	ENSGT01050000244808.A.b.b.a	ENSGT00950000183190.a.b.a.b #33	ENSGT00420000029746.f #34
Chiroptera	ANCESTRAL SPECIES	20	ENSGT00940000161136 #7	ENSGT00390000006215 #8	ENSGT00940000161600 #9	ENSGT00950000183094.a #10	ENSGT00390000011497 #11	ENSGT00500000045038 #12	ENSGT00390000018360 #13	ENSGT00390000003103 #14	ENSGT00390000002049.c.a #15	ENSGT00940000156893 #16	ENSGT00950000182907.a.a #17	ENSGT00530000063760.b #18	ENSGT00550000075028 #19	ENSGT00940000159172 #20	ENSGT00940000160276 #21	ENSGT00870000136537 #22	ENSGT00950000182940.b.a.b #23	ENSGT00510000048165 #24	ENSGT00940000153118.db.a.a.b.a.b #25	ENSGT00940000153118.db.a.a.b.a.a #26	ENSGT01100000263575.A ##27	ENSGT00940000156302	ENSGT01100000263559.B #31	ENSGT00940000160426	ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.b.b ##32	ENSGT00940000163525	ENSGT01060000248528.b.kh.yb.d #30	ENSGT00940000155501.a.b	ENSGT01100000263514.A.e.a.b.a.b.a.a.a.b.a.a.a.b	ENSGT00940000153125.D.a.a	ENSGT01100000263575.B.u ##27
Microchiroptera	ANCESTRAL SPECIES	21	ENSGT00940000161136 #7	ENSGT00390000006215 #8	ENSGT00940000161600 #9	ENSGT00950000183094.a #10	ENSGT00390000011497 #11	ENSGT00500000045038 #12	ENSGT00390000018360 #13	ENSGT00390000003103 #14	ENSGT00390000002049.c.a #15	ENSGT00940000156893 #16	ENSGT00950000182907.a.a #17	ENSGT00530000063760.b #18	ENSGT00550000075028 #19	ENSGT00940000159172 #20	ENSGT00940000160276 #21	ENSGT00870000136537 #22	ENSGT00950000182940.b.a.b #23	ENSGT00510000048165 #24	ENSGT00940000153118.db.a.a.b.a.b #25	ENSGT00940000153118.db.a.a.b.a.a #26	ENSGT01100000263506.a.e.a.b ##32	ENSGT01100000263514.A.e.a.b.a.b.a.a.b	ENSGT01060000248528.b.jh.b ##30	ENSGT01060000248528.b.kh.yb.d #30	ENSGT00940000155501.a.b	ENSGT01100000263514.A.e.a.b.a.b.a.a.a.b.a.a.a.b	ENSGT00940000153125.D.a.a	ENSGT01100000263575.B.u ##27	ENSGT00940000156302	ENSGT01100000263559.A.f #29	ENSGT01100000263506.a.e.b #32
Greater horseshoe bat	MODERN SPECIES	14	ADAMTSL4 (ENSRFEG00010020724) #7	ECM1 (ENSRFEG00010020676) #8	TARS2 (ENSRFEG00010020572) #9	RPRD2 (ENSRFEG00010020482) #10	PRPF3 (ENSRFEG00010020436) #11	ENSRFEG00010020409 #12	CIART (ENSRFEG00010020371) #13	C1orf54 (ENSRFEG00010020321) #14	APH1A (ENSRFEG00010020244) #15	CA14 (ENSRFEG00010020216) #16	ANP32E (ENSRFEG00010020103) #17	PLEKHO1 (ENSRFEG00010020048) #18	VPS45 (ENSRFEG00010019952) #19	OTUD7B (ENSRFEG00010019911) #20	MTMR11 (ENSRFEG00010019669) #21	SF3B4 (ENSRFEG00010019596) #22	SV2A (ENSRFEG00010019515) #23	BOLA1 (ENSRFEG00010019489) #24	ENSRFEG00010019479	H2AC21 (ENSRFEG00010019466) #25	H2AC20 (ENSRFEG00010019447) #26	ENSRFEG00010019413 ##32	ENSRFEG00010019403 ##27	ENSRFEG00010019396	ENSRFEG00010019380 #29	ENSRFEG00010019363 #30	ENSRFEG00010019351 ##30	ENSRFEG00010019339 #29	H2BC18 (ENSRFEG00010019313) #32	FCGR1A (ENSRFEG00010019271)	HJV (ENSRFEG00010019205) #35
Microbat	MODERN SPECIES	1088	ENSMLUG00000029657	ADAMTSL4 (ENSMLUG00000003472) #7	ECM1 (ENSMLUG00000013133) #8	TARS2 (ENSMLUG00000013123) #9	RPRD2 (ENSMLUG00000013112) #10	MRPS21 (ENSMLUG00000025875) #12	CIART (ENSMLUG00000013709) #13	C1orf54 (ENSMLUG00000013704) #14	APH1A (ENSMLUG00000013692) #15	CA14 (ENSMLUG00000013677) #16	ANP32E (ENSMLUG00000013669) #17	VPS45 (ENSMLUG00000010858) #19	ENSMLUG00000025917	OTUD7B (ENSMLUG00000010828) #20	MTMR11 (ENSMLUG00000010798) #21	SF3B4 (ENSMLUG00000010789) #22	SV2A (ENSMLUG00000010756) #23	BOLA1 (ENSMLUG00000010753) #24	H2AC21 (ENSMLUG00000010741) #25	H2AC20 (ENSMLUG00000022626) #26	ENSMLUG00000010548 ##32	H4C5 (ENSMLUG00000028953) ##30	ENSMLUG00000010730	ENSMLUG00000010719 ##27	ENSMLUG00000025238	ENSMLUG00000028731 #30	ENSMLUG00000027063 #30	H2BC18 (ENSMLUG00000028645) #32	FCGR1A (ENSMLUG00000011569)	ENSMLUG00000024176	ENSMLUG00000028622
Megabat	MODERN SPECIES	2771												PLEKHO1 (ENSPVAG00000014181) #18	VPS45 (ENSPVAG00000014180) #19	OTUD7B (ENSPVAG00000014176) #20	MTMR11 (ENSPVAG00000014172) #21	SF3B4 (ENSPVAG00000014171) #22	SV2A (ENSPVAG00000014170) #23	ENSPVAG00000014167	H2AC20 (ENSPVAG00000014165) #26	ENSPVAG00000014163 ##27
Equus	ANCESTRAL SPECIES	3	ENSGT00940000161136 #7	ENSGT00390000006215 #8	ENSGT00940000161600 #9	ENSGT00950000183094.a #10	ENSGT00390000011497 #11	ENSGT00500000045038 #12	ENSGT00390000018360 #13	ENSGT00390000003103 #14	ENSGT00390000002049.c.a #15	ENSGT00940000156893 #16	ENSGT00950000182907.a.a #17	ENSGT00530000063760.b #18	ENSGT00550000075028 #19	ENSGT00940000159172 #20	ENSGT00940000160276 #21	ENSGT00870000136537 #22	ENSGT00950000182940.b.a.b #23	ENSGT00510000048165 #24	ENSGT00940000153118.db.a.a.b.a.b #25	ENSGT00940000153118.db.a.a.b.a.a #26	ENSGT01100000263559.B #31	ENSGT01100000263514.A.e.a.a	ENSGT00940000155501.a.b	ENSGT01060000248528.b.kh.yb.d #30	ENSGT01060000248528.b.jh.b ##30	ENSGT01100000263567.a.a	ENSGT00940000160426	ENSGT01100000263506.a.e.a.a.a.b.a.a.a ##32	ENSGT01060000248528.b.jh.a.b ##30	ENSGT00940000163036.g.a.a.a	ENSGT01100000263575.A ##27
Donkey	MODERN SPECIES	17	ECM1 (ENSEASG00005001606) #8	TARS2 (ENSEASG00005001587) #9	RPRD2 (ENSEASG00005001574) #10	PRPF3 (ENSEASG00005001566) #11	MRPS21 (ENSEASG00005001557) #12	CIART (ENSEASG00005001554) #13	C1orf54 (ENSEASG00005025776) #14	APH1A (ENSEASG00005035187) #15	CA14 (ENSEASG00005001536) #16	ANP32E (ENSEASG00005038731) #17	PLEKHO1 (ENSEASG00005001526) #18	VPS45 (ENSEASG00005001512) #19	ENSEASG00005027301 #19	OTUD7B (ENSEASG00005001503) #20	MTMR11 (ENSEASG00005001485) #21	SF3B4 (ENSEASG00005001477) #22	SV2A (ENSEASG00005001472) #23	ENSEASG00005001466 #24	H2AC21 (ENSEASG00005032093) #25	ENSEASG00005025005 #26	ENSEASG00005026834 #31	ENSEASG00005033525 ##27	ENSEASG00005027933 ##27	ENSEASG00005036493 #30	ENSEASG00005037866 #31	ENSEASG00005002125 #34	ENSEASG00005002130 #33	ENSEASG00005037767	ENSEASG00005025106 #35	TXNIP (ENSEASG00005007477) #36	POLR3GL (ENSEASG00005007466)
Carnivora	ANCESTRAL SPECIES	1	ENSGT00940000161136 #7	ENSGT00390000006215 #8	ENSGT00940000161600 #9	ENSGT00950000183094.a #10	ENSGT00390000011497 #11	ENSGT00500000045038 #12	ENSGT00390000018360 #13	ENSGT00390000003103 #14	ENSGT00390000002049.c.a #15	ENSGT00940000156893 #16	ENSGT00950000182907.a.a #17	ENSGT00530000063760.b #18	ENSGT00550000075028 #19	ENSGT00940000159172 #20	ENSGT00940000160276 #21	ENSGT00870000136537 #22	ENSGT00950000182940.b.a.b #23	ENSGT00510000048165 #24	ENSGT00940000153118.db.a.a.b.a.b #25	ENSGT00940000153118.db.a.a.b.a.a #26	ENSGT01100000263575.A ##27	ENSGT00940000153092.a.a.c.a.b	ENSGT01100000263575.B.u ##27	ENSGT00940000156302	ENSGT01100000263559.A.f #29	ENSGT01100000263506.a.e.b #32	ENSGT01050000244808.A.b.b.a	ENSGT00950000183190.a.b.a.b #33	ENSGT00420000029746.f #34	ENSGT00950000183112.b.b #35	ENSGT00940000158522 #36
Caniformia	ANCESTRAL SPECIES	31	ENSGT00940000161136 #7	ENSGT00390000006215 #8	ENSGT00940000161600 #9	ENSGT00950000183094.a #10	ENSGT00390000011497 #11	ENSGT00500000045038 #12	ENSGT00390000018360 #13	ENSGT00390000003103 #14	ENSGT00390000002049.c.a #15	ENSGT00940000156893 #16	ENSGT00950000182907.a.a #17	ENSGT00530000063760.b #18	ENSGT00550000075028 #19	ENSGT00940000159172 #20	ENSGT00940000160276 #21	ENSGT00870000136537 #22	ENSGT00950000182940.b.a.b #23	ENSGT00510000048165 #24	ENSGT00940000153118.db.a.a.b.a.b #25	ENSGT00940000153118.db.a.a.b.a.a #26	ENSGT01100000263575.B.u ##27	ENSGT01060000248528.b.kh.yb.c.a #30	ENSGT01100000263559.A.f #29	ENSGT01060000248528.b.jh.a.b ##30	ENSGT01100000263559.B #31	ENSGT01100000263506.a.e.b #32	ENSGT01050000244808.A.b.b.a	ENSGT00950000183190.a.b.a.b #33	ENSGT00420000029746.f #34	ENSGT00950000183112.b.b #35	ENSGT00940000158522 #36
Caniformia_b	ANCESTRAL SPECIES	35	ENSGT00940000161136 #7	ENSGT00390000006215 #8	ENSGT00940000161600 #9	ENSGT00950000183094.a #10	ENSGT00390000011497 #11	ENSGT00500000045038 #12	ENSGT00390000018360 #13	ENSGT00390000003103 #14	ENSGT00390000002049.c.a #15	ENSGT00940000156893 #16	ENSGT00950000182907.a.a #17	ENSGT00530000063760.b #18	ENSGT00550000075028 #19	ENSGT00940000159172 #20	ENSGT00940000160276 #21	ENSGT00870000136537 #22	ENSGT00950000182940.b.a.b #23	ENSGT00510000048165 #24	ENSGT00940000153118.db.a.a.b.a.b #25	ENSGT00940000153118.db.a.a.b.a.a #26	ENSGT01100000263575.B.u ##27	ENSGT01100000263559.A.f #29	ENSGT00940000156302	ENSGT01100000263506.a.e.a.a.a.a.b.a ##32	ENSGT01060000248528.b.jh.a.b ##30	ENSGT01100000263559.B #31	ENSGT01100000263506.a.e.b #32	ENSGT01050000244808.A.b.b.a	ENSGT00950000183190.a.b.a.b #33	ENSGT00420000029746.f #34	ENSGT00950000183112.b.b #35
Ursidae	ANCESTRAL SPECIES		ENSGT00940000161136 #7	ENSGT00390000006215 #8	ENSGT00940000161600 #9	ENSGT00950000183094.a #10	ENSGT00390000011497 #11	ENSGT00500000045038 #12	ENSGT00390000018360 #13	ENSGT00390000003103 #14	ENSGT00390000002049.c.a #15	ENSGT00940000156893 #16	ENSGT00950000182907.a.a.a.b #17	ENSGT00530000063760.b #18	ENSGT00550000075028 #19	ENSGT00940000159172 #20	ENSGT00940000160276 #21	ENSGT00870000136537 #22	ENSGT00950000182940.b.a.b #23	ENSGT00510000048165 #24	ENSGT00940000153118.db.a.a.b.a.b #25	ENSGT00940000153118.db.a.a.b.a.a #26	ENSGT01100000263575.B.u ##27	ENSGT01100000263575.A ##27	ENSGT01060000248528.b.jh.a.b ##30	ENSGT01100000263559.B #31	ENSGT01100000263506.a.e.b #32	ENSGT01050000244808.A.b.b.a	ENSGT00950000183190.a.b.a.b #33	ENSGT00420000029746.f #34	ENSGT00950000183112.b.b #35	ENSGT00940000158522 #36	ENSGT01100000263883
Ursus	ANCESTRAL SPECIES	18	ENSGT00940000161136 #7	ENSGT00390000006215 #8	ENSGT00940000161600 #9	ENSGT00950000183094.a #10	ENSGT00390000011497 #11	ENSGT00500000045038 #12	ENSGT00390000018360 #13	ENSGT00390000003103 #14	ENSGT00390000002049.c.a #15	ENSGT00940000156893 #16	ENSGT00950000182907.a.a.a.b #17	ENSGT00530000063760.b #18	ENSGT00550000075028 #19	ENSGT00940000159172 #20	ENSGT00940000160276 #21	ENSGT00870000136537 #22	ENSGT00950000182940.b.a.b #23	ENSGT00510000048165 #24	ENSGT00940000153118.db.a.a.b.a.a #26	ENSGT01100000263575.A ##27	ENSGT00940000153118.db.a.a.b.a.b #25	ENSGT01100000263575.B.u ##27	ENSGT00940000156302	ENSGT01100000263504.a.b.b.b.a.b	ENSGT01100000263506.a.e.a.a.a.b.b.b ##32	ENSGT00940000153118.db.a.a.a.a ##26	ENSGT00940000153125.B	ENSGT01100000263506.a.e.a.a.a.a.b.b ##32	ENSGT01100000263506.a.e.a.a.a.a.a ##32	ENSGT00940000153125.E.c.b	ENSGT01100000263567.a.a
American black bear	MODERN SPECIES	234											ANP32E (ENSUAMG00000022462) #17	PLEKHO1 (ENSUAMG00000022464) #18	VPS45 (ENSUAMG00000022465) #19	OTUD7B (ENSUAMG00000022466) #20	MTMR11 (ENSUAMG00000022467) #21	SF3B4 (ENSUAMG00000022468) #22	SV2A (ENSUAMG00000022469) #23	BOLA1 (ENSUAMG00000022470) #24	ENSUAMG00000022471 #26	H2AC21 (ENSUAMG00000022472) #25	ENSUAMG00000022473 ##27	ENSUAMG00000022483 #26	ENSUAMG00000022505 ##27	ENSUAMG00000022508 ##27	ENSUAMG00000022509	ENSUAMG00000022510 ##30	H3C13 (ENSUAMG00000022511) #31	H2BC18 (ENSUAMG00000022512) #32	FCGR1A (ENSUAMG00000022513)	ENSUAMG00000022514 #33	ENSUAMG00000022516 #34
Polar bear	MODERN SPECIES	193	ECM1 (ENSUMAG00000003701) #8	TARS2 (ENSUMAG00000003705) #9	RPRD2 (ENSUMAG00000003712) #10	PRPF3 (ENSUMAG00000003720) #11	MRPS21 (ENSUMAG00000003735) #12	CIART (ENSUMAG00000003740) #13	C1orf54 (ENSUMAG00000003742) #14	APH1A (ENSUMAG00000003746) #15	CA14 (ENSUMAG00000003751) #16	ENSUMAG00000003753	ANP32E (ENSUMAG00000003756) #17	PLEKHO1 (ENSUMAG00000003760) #18	VPS45 (ENSUMAG00000003781) #19	OTUD7B (ENSUMAG00000003786) #20	MTMR11 (ENSUMAG00000003794) #21	SF3B4 (ENSUMAG00000003802) #22	SV2A (ENSUMAG00000003804) #23	H2AC21 (ENSUMAG00000003816) #25	ENSUMAG00000003822 ##26	ENSUMAG00000003825 ##32	ENSUMAG00000003829	ENSUMAG00000003836	ENSUMAG00000003882 ##32	ENSUMAG00000003899	ENSUMAG00000003922	ENSUMAG00000003931 #30	ENSUMAG00000003935	H2BC18 (ENSUMAG00000003946) #32	FCGR1A (ENSUMAG00000003967)	ENSUMAG00000003983 #33	ENSUMAG00000003995 #34
Giant Panda	MODERN SPECIES	11	ADAMTSL4 (ENSAMEG00000001424) #7	ECM1 (ENSAMEG00000001502) #8	TARS2 (ENSAMEG00000001547) #9	RPRD2 (ENSAMEG00000001598) #10	PRPF3 (ENSAMEG00000001630) #11	MRPS21 (ENSAMEG00000001703) #12	CIART (ENSAMEG00000001706) #13	C1orf54 (ENSAMEG00000001725) #14	APH1A (ENSAMEG00000001729) #15	CA14 (ENSAMEG00000001775) #16	ANP32E (ENSAMEG00000001813) #17	PLEKHO1 (ENSAMEG00000001832) #18	VPS45 (ENSAMEG00000001841) #19	OTUD7B (ENSAMEG00000010043) #20	MTMR11 (ENSAMEG00000010059) #21	SF3B4 (ENSAMEG00000010073) #22	SV2A (ENSAMEG00000010085) #23	BOLA1 (ENSAMEG00000018625) #24	H2AC21 (ENSAMEG00000030369) #25	H2AC20 (ENSAMEG00000030590) #26	H2BC21 (ENSAMEG00000024998) ##27	ENSAMEG00000026973 #30	H3C14 (ENSAMEG00000026075) #31	ENSAMEG00000031520 #32	ENSAMEG00000007093	ENSAMEG00000029936	ENSAMEG00000006949 #34	ENSAMEG00000026609 #35	TXNIP (ENSAMEG00000017638) #36	ENSAMEG00000017634	ANKRD34A (ENSAMEG00000017633)
Mustelinae	ANCESTRAL SPECIES	81	ENSGT00940000161136 #7	ENSGT00390000006215 #8	ENSGT00940000161600 #9	ENSGT00950000183094.a #10	ENSGT00390000011497 #11	ENSGT00500000045038 #12	ENSGT00390000018360 #13	ENSGT00390000003103 #14	ENSGT00390000002049.c.a #15	ENSGT00940000156893 #16	ENSGT00950000182907.a.a #17	ENSGT00530000063760.b #18	ENSGT00550000075028 #19	ENSGT00940000159172 #20	ENSGT00940000160276 #21	ENSGT00870000136537 #22	ENSGT00950000182940.b.a.b #23	ENSGT00510000048165 #24	ENSGT00940000153118.db.a.a.b.a.b #25	ENSGT00940000153118.db.a.a.b.a.a #26	ENSGT01100000263559.B #31	ENSGT01100000263506.a.e.b #32	ENSGT01050000244808.A.b.b.a	ENSGT00950000183190.a.b.a.b #33	ENSGT00420000029746.f #34
American mink	MODERN SPECIES	530											ENSNVIG00000002941 #17	PLEKHO1 (ENSNVIG00000002956) #18	VPS45 (ENSNVIG00000002966) #19	OTUD7B (ENSNVIG00000003037) #20	MTMR11 (ENSNVIG00000003067) #21	SF3B4 (ENSNVIG00000003168) #22	SV2A (ENSNVIG00000003188) #23	BOLA1 (ENSNVIG00000003246) #24	H2AC21 (ENSNVIG00000003251) #25	H2AC20 (ENSNVIG00000003252) #26	ENSNVIG00000003258 ##27	ENSNVIG00000003275 #29	ENSNVIG00000003279	ENSNVIG00000003286 ##27	ENSNVIG00000003349 ##27	ENSNVIG00000003397	ENSNVIG00000003399 #29	H4 (ENSNVIG00000003408) #30	ENSNVIG00000003413 #31	H2BC18 (ENSNVIG00000003417) #32	ENSNVIG00000003430
Ferret	MODERN SPECIES	398	ADAMTSL4 (ENSMPUG00000004691) #7	ECM1 (ENSMPUG00000004712) #8	TARS2 (ENSMPUG00000004795) #9	RPRD2 (ENSMPUG00000005032) #10	PRPF3 (ENSMPUG00000005080) #11	MRPS21 (ENSMPUG00000005221) #12	CIART (ENSMPUG00000005224) #13	APH1A (ENSMPUG00000005237) #15	C1orf54 (ENSMPUG00000005317) #14	CA14 (ENSMPUG00000005329) #16	ANP32E (ENSMPUG00000005343) #17	PLEKHO1 (ENSMPUG00000005354) #18	VPS45 (ENSMPUG00000005390) #19	OTUD7B (ENSMPUG00000005404) #20	MTMR11 (ENSMPUG00000005535) #21	SF3B4 (ENSMPUG00000005563) #22	SV2A (ENSMPUG00000005578) #23	H2AC21 (ENSMPUG00000018422) #25	H2AC20 (ENSMPUG00000018423) #26	H2BC21 (ENSMPUG00000018424) ##27	ENSMPUG00000018425	H2BC18 (ENSMPUG00000005595) #32	FCGR1A (ENSMPUG00000005605)	ENSMPUG00000005618 #33	ENSMPUG00000005632 #34
Canidae	ANCESTRAL SPECIES	18	ENSGT00940000161136 #7	ENSGT00390000006215 #8	ENSGT00940000161600 #9	ENSGT00950000183094.a #10	ENSGT00390000011497 #11	ENSGT00500000045038.k #12	ENSGT00390000018360 #13	ENSGT00390000003103 #14	ENSGT00390000002049.c.a #15	ENSGT00940000156893 #16	ENSGT00950000182907.a.a #17	ENSGT00530000063760.b #18	ENSGT00550000075028 #19	ENSGT00940000159172 #20	ENSGT00940000160276 #21	ENSGT00870000136537 #22	ENSGT00950000182940.b.a.b #23	ENSGT00510000048165 #24	ENSGT00940000153118.db.a.a.b.a.b #25	ENSGT00940000153118.db.a.a.b.a.a #26	ENSGT01100000263575.B.u ##27	ENSGT01060000248528.b.kh.yb.c.a #30	ENSGT01100000263559.A.f #29	ENSGT01100000263506.a.e.b #32	ENSGT01050000244808.A.b.b.a	ENSGT00950000183190.a.b.a.b #33	ENSGT00420000029746.f #34	ENSGT00950000183112.b.b #35	ENSGT00940000158522 #36	ENSGT01100000263883	ENSGT00390000012355.B.b
Red fox	DUPLICATION
Red fox	MODERN SPECIES	176	ADAMTSL4 (ENSVVUG00000011516) #7	ENSVVUG00000011504	ECM1 (ENSVVUG00000011492) #8	TARS2 (ENSVVUG00000009226) #9	RPRD2 (ENSVVUG00000009075) #10	PRPF3 (ENSVVUG00000007933) #11	MRPS21 (ENSVVUG00000007865) #12	CIART (ENSVVUG00000007857) #13	APH1A (ENSVVUG00000007850) #15	CA14 (ENSVVUG00000007843) #16	ENSVVUG00000007839 #17	PLEKHO1 (ENSVVUG00000007828) #18	VPS45 (ENSVVUG00000007786) #19	OTUD7B (ENSVVUG00000007773) #20	MTMR11 (ENSVVUG00000007745) #21	ENSVVUG00000007732 #22	SV2A (ENSVVUG00000007726) #23	BOLA1 (ENSVVUG00000007718) #24	H2AC21 (ENSVVUG00000007714) #25	H2AC20 (ENSVVUG00000007707) #26	H2BC21 (ENSVVUG00000007671) ##27	ENSVVUG00000007660 #30	H3-7 (ENSVVUG00000007640) #29	H2BC18 (ENSVVUG00000007606) #32	ENSVVUG00000007601	ENSVVUG00000007595 #33	ENSVVUG00000007591	FCGR1A (ENSVVUG00000007556)	ENSVVUG00000007552 #34	HJV (ENSVVUG00000007529) #35	TXNIP (ENSVVUG00000007524) #36
Red fox	MODERN SPECIES	104	SPATA2 (ENSVVUG00000022404)	RNF114 (ENSVVUG00000022407)	SNAI1 (ENSVVUG00000022410)	ENSVVUG00000022417	TMEM189 (ENSVVUG00000022420)	PTPN1 (ENSVVUG00000022432)	RIPOR3 (ENSVVUG00000022436)	PARD6B (ENSVVUG00000022445)	BCAS4 (ENSVVUG00000022450)	ADNP (ENSVVUG00000022456)	DPM1 (ENSVVUG00000022458)	MOCS3 (ENSVVUG00000022461)	KCNG1 (ENSVVUG00000022465)	NFATC2 (ENSVVUG00000022491)	ATP9A (ENSVVUG00000022659)	ENSVVUG00000022697 #22	ZFP64 (ENSVVUG00000022699)	TSHZ2 (ENSVVUG00000022715)	ENSVVUG00000022718	ZNF217 (ENSVVUG00000022722)	BCAS1 (ENSVVUG00000022730)	CYP24A1 (ENSVVUG00000022737)	PFDN4 (ENSVVUG00000022740)	DOK5 (ENSVVUG00000022743)
Canis_lupus	ANCESTRAL SPECIES	10	ENSGT00940000161136 #7	ENSGT00390000006215 #8	ENSGT00940000161600 #9	ENSGT00950000183094.a #10	ENSGT00390000011497 #11	ENSGT00500000045038.k #12	ENSGT00390000018360 #13	ENSGT00390000003103 #14	ENSGT00390000002049.c.a #15	ENSGT00940000156893 #16	ENSGT00950000182907.a.a #17	ENSGT00530000063760.b #18	ENSGT00550000075028 #19	ENSGT00940000159172 #20	ENSGT00940000160276 #21	ENSGT00870000136537 #22	ENSGT00950000182940.b.a.b #23	ENSGT00510000048165 #24	ENSGT00940000153118.db.a.a.b.a.b #25	ENSGT00940000156302	ENSGT01100000263575.B.u ##27	ENSGT01100000263506.a.e.b #32	ENSGT01050000244808.A.b.b.a	ENSGT00950000183190.a.b.a.b #33	ENSGT00420000029746.f #34	ENSGT00950000183112.b.b #35	ENSGT00940000158522 #36	ENSGT01100000263883	ENSGT00390000012355.B.b	ENSGT00390000005869.a	ENSGT00730000111185
Dog	MODERN SPECIES	8	ADAMTSL4 (ENSCAFG00845018385) #7	ECM1 (ENSCAFG00845018089) #8	TARS2 (ENSCAFG00845017490) #9	RPRD2 (ENSCAFG00845017196) #10	PRPF3 (ENSCAFG00845017034) #11	MRPS21 (ENSCAFG00845016904) #12	CIART (ENSCAFG00845016855) #13	C1orf54 (ENSCAFG00845016794) #14	APH1A (ENSCAFG00845016683) #15	CA14 (ENSCAFG00845016587) #16	ANP32E (ENSCAFG00845012804) #17	PLEKHO1 (ENSCAFG00845012601) #18	VPS45 (ENSCAFG00845012364) #19	OTUD7B (ENSCAFG00845012281) #20	MTMR11 (ENSCAFG00845012198) #21	SF3B4 (ENSCAFG00845012146) #22	SV2A (ENSCAFG00845012074) #23	ENSCAFG00845012017 #24	ENSCAFG00845011998 #25	ENSCAFG00845011880	ENSCAFG00845011830	ENSCAFG00845011803 ##27	FCGR1A (ENSCAFG00845011691)	ENSCAFG00845011630 #33	ENSCAFG00845011593 #34	ENSCAFG00845011506 #35	TXNIP (ENSCAFG00845011435) #36	POLR3GL (ENSCAFG00845011382)	ANKRD34A (ENSCAFG00845011351)	LIX1L (ENSCAFG00845011297)	RBM8A (ENSCAFG00845011260)
Dingo	MODERN SPECIES	223	ADAMTSL4 (ENSCAFG00020019552) #7	ECM1 (ENSCAFG00020019611) #8	TARS2 (ENSCAFG00020019615) #9	RPRD2 (ENSCAFG00020019619) #10	PRPF3 (ENSCAFG00020019653) #11	MRPS21 (ENSCAFG00020019663) #12	CIART (ENSCAFG00020019665) #13	C1orf54 (ENSCAFG00020019667) #14	APH1A (ENSCAFG00020019671) #15	CA14 (ENSCAFG00020019676) #16	ENSCAFG00020019677 #17	PLEKHO1 (ENSCAFG00020019684) #18	VPS45 (ENSCAFG00020019689) #19	OTUD7B (ENSCAFG00020019694) #20	MTMR11 (ENSCAFG00020019770) #21	SF3B4 (ENSCAFG00020019775) #22	SV2A (ENSCAFG00020019781) #23	BOLA1 (ENSCAFG00020019784) #24	ENSCAFG00020019789 ##26	H2AC21 (ENSCAFG00020019793) #25	ENSCAFG00020019797 ##27	ENSCAFG00020019814 ##31	ENSCAFG00020019823	ENSCAFG00020019846 ##27	ENSCAFG00020019848	ENSCAFG00020019854 ##27	ENSCAFG00020019867	ENSCAFG00020019897 #30	H2BC18 (ENSCAFG00020019901) #32	FCGR1A (ENSCAFG00020019916)	ENSCAFG00020019917 #33
Felidae	ANCESTRAL SPECIES	10	ENSGT00940000161136 #7	ENSGT00390000006215 #8	ENSGT00940000161600 #9	ENSGT00950000183094.a #10	ENSGT00390000011497 #11	ENSGT00500000045038.n #12	ENSGT00390000018360 #13	ENSGT00390000003103 #14	ENSGT00390000002049.c.a #15	ENSGT00940000156893 #16	ENSGT00950000182907.a.a #17	ENSGT00530000063760.b #18	ENSGT00550000075028 #19	ENSGT00940000159172 #20	ENSGT00940000160276 #21	ENSGT00870000136537 #22	ENSGT00950000182940.b.a.b #23	ENSGT00510000048165 #24	ENSGT00940000153118.db.a.a.b.a.b #25	ENSGT00940000153118.db.a.a.b.a.a #26	ENSGT01100000263575.B.u ##27	ENSGT00940000156302	ENSGT01100000263575.A ##27	ENSGT00940000153092.a.a.c.a.a	ENSGT01100000263514.A.e.a.b.a.b.a.a.a.b.a.a.a.a	ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.b.a.a.a ##32	ENSGT00940000153092.a.b.f	ENSGT00940000155501.a.a	ENSGT01100000263474.a.b.b.e.a.a.b	ENSGT01100000263506.a.e.a.a.a.b.a.a.b.a.a ##32	ENSGT00940000153118.db.a.b ##26
Panthera	ANCESTRAL SPECIES	40	ENSGT00940000161136 #7	ENSGT00390000006215 #8	ENSGT00940000161600 #9	ENSGT00950000183094.a #10	ENSGT00390000011497 #11	ENSGT00500000045038.n.a #12	ENSGT00390000018360 #13	ENSGT00390000003103 #14	ENSGT00390000002049.c.a #15	ENSGT00940000156893 #16	ENSGT00950000182907.a.a #17	ENSGT00530000063760.b #18	ENSGT00550000075028 #19	ENSGT00940000159172 #20	ENSGT00940000160276 #21	ENSGT00870000136537 #22	ENSGT00950000182940.b.a.b #23	ENSGT00510000048165 #24	ENSGT00940000153118.db.a.a.b.a.b #25	ENSGT00940000153118.db.a.a.b.a.a #26	ENSGT01100000263575.B.u ##27	ENSGT01060000248528.b.jh.b ##30	ENSGT01100000263559.A.f #29	ENSGT01100000263506.a.e.b #32	ENSGT01050000244808.A.b.b.a	ENSGT00390000016972.a.b.b	ENSGT00950000183190.a.b.a.b #33	ENSGT00420000029746.f #34
Panthera_a	ANCESTRAL SPECIES	38	ENSGT00940000161136 #7	ENSGT00390000006215 #8	ENSGT00940000161600 #9	ENSGT00950000183094.a #10	ENSGT00390000011497 #11	ENSGT00500000045038.n.a #12	ENSGT00390000018360 #13	ENSGT00390000003103 #14	ENSGT00390000002049.c.a #15	ENSGT00940000156893 #16	ENSGT00950000182907.a.a #17	ENSGT00530000063760.b #18	ENSGT00550000075028 #19	ENSGT00940000159172 #20	ENSGT00940000160276 #21	ENSGT00870000136537 #22	ENSGT00950000182940.b.a.b #23	ENSGT00510000048165 #24	ENSGT00940000153118.db.a.a.b.a.b #25	ENSGT00940000153118.db.a.a.b.a.a #26	ENSGT01100000263575.B.u ##27	ENSGT00950000183112.b.b #35	ENSGT00940000158522 #36	ENSGT01060000248645	ENSGT00390000012355.B.b	ENSGT00390000005869.a	ENSGT00730000111185	ENSGT00910000145379	ENSGT00390000014273.b	ENSGT00940000158423	ENSGT00530000063074.a
lion	MODERN SPECIES	8	ADAMTSL4 (ENSPLOG00000019514) #7	ECM1 (ENSPLOG00000019469) #8	TARS2 (ENSPLOG00000019042) #9	RPRD2 (ENSPLOG00000018951) #10	PRPF3 (ENSPLOG00000018919) #11	ENSPLOG00000018890 #12	CIART (ENSPLOG00000018806) #13	C1orf54 (ENSPLOG00000018755) #14	APH1A (ENSPLOG00000018596) #15	CA14 (ENSPLOG00000018473) #16	ANP32E (ENSPLOG00000018252) #17	PLEKHO1 (ENSPLOG00000018167) #18	VPS45 (ENSPLOG00000017939) #19	OTUD7B (ENSPLOG00000017898) #20	MTMR11 (ENSPLOG00000017771) #21	SF3B4 (ENSPLOG00000017698) #22	SV2A (ENSPLOG00000017521) #23	BOLA1 (ENSPLOG00000017492) #24	H2AC21 (ENSPLOG00000017476) #25	H2AC20 (ENSPLOG00000017459) #26	ENSPLOG00000017448 ##27	HJV (ENSPLOG00000017362) #35	TXNIP (ENSPLOG00000017292) #36	ENSPLOG00000017238	ENSPLOG00000017202	LIX1L (ENSPLOG00000017177)	RBM8A (ENSPLOG00000017084)	PEX11B (ENSPLOG00000017016)	ITGA10 (ENSPLOG00000016554)	ANKRD35 (ENSPLOG00000016395)	PIAS3 (ENSPLOG00000016111)
leopard	MODERN SPECIES	149	ECM1 (ENSPPRG00000013966) #8	TARS2 (ENSPPRG00000019975) #9	RPRD2 (ENSPPRG00000000487) #10	ENSPPRG00000000561	PRPF3 (ENSPPRG00000000731) #11	ENSPPRG00000000903 #12	CIART (ENSPPRG00000001098) #13	C1orf54 (ENSPPRG00000001580) #14	APH1A (ENSPPRG00000002030) #15	CA14 (ENSPPRG00000002165) #16	ANP32E (ENSPPRG00000003660) #17	PLEKHO1 (ENSPPRG00000004031) #18	VPS45 (ENSPPRG00000005479) #19	OTUD7B (ENSPPRG00000005622) #20	MTMR11 (ENSPPRG00000007153) #21	SF3B4 (ENSPPRG00000007384) #22	SV2A (ENSPPRG00000007971) #23	BOLA1 (ENSPPRG00000016802) #24	H2AC21 (ENSPPRG00000016850) #25	ENSPPRG00000016865 #26	ENSPPRG00000016879 #25	H2AC20 (ENSPPRG00000016889) #26	H2BC21 (ENSPPRG00000016907) ##27	H2AC19 (ENSPPRG00000016923)	ENSPPRG00000017082 ##27	ENSPPRG00000017282 ##27	ENSPPRG00000017308	ENSPPRG00000017324 ##30	H3C13 (ENSPPRG00000017364) #31	H2BC18 (ENSPPRG00000011510) #32	FCGR1A (ENSPPRG00000012934)
Tiger	MODERN SPECIES	275	ADAMTSL4 (ENSPTIG00000015181) #7	ECM1 (ENSPTIG00000012717) #8	TARS2 (ENSPTIG00000008079) #9	RPRD2 (ENSPTIG00000006304) #10	PRPF3 (ENSPTIG00000005516) #11	ENSPTIG00000003850 #12	CIART (ENSPTIG00000000357) #13	C1orf54 (ENSPTIG00000021455) #14	APH1A (ENSPTIG00000021060) #15	CA14 (ENSPTIG00000020798) #16	ANP32E (ENSPTIG00000019676) #17	PLEKHO1 (ENSPTIG00000018948) #18	VPS45 (ENSPTIG00000018151) #19	OTUD7B (ENSPTIG00000017376) #20	MTMR11 (ENSPTIG00000014650) #21	SF3B4 (ENSPTIG00000014530) #22	SV2A (ENSPTIG00000013557) #23	BOLA1 (ENSPTIG00000004599) #24	H2AC21 (ENSPTIG00000004596) #25	ENSPTIG00000004585 ##27	ENSPTIG00000011928	ENSPTIG00000004051 ##27	ENSPTIG00000004012 #30	H2BC18 (ENSPTIG00000009410) #32	FCGR1A (ENSPTIG00000009323)	ENSPTIG00000003933	ENSPTIG00000008412 #33	ENSPTIG00000007301
Cat	MODERN SPECIES	239	ECM1 (ENSFCAG00000027224) #8	TARS2 (ENSFCAG00000001702) #9	MCL1 (ENSFCAG00000030278)	RPRD2 (ENSFCAG00000030083) #10	PRPF3 (ENSFCAG00000013940) #11	ENSFCAG00000034082 #12	CIART (ENSFCAG00000013937) #13	CC1H1orf54 (ENSFCAG00000013939) #14	CA14 (ENSFCAG00000013934) #16	APH1A (ENSFCAG00000030589) #15	ANP32E (ENSFCAG00000022278) #17	PLEKHO1 (ENSFCAG00000035563) #18	VPS45 (ENSFCAG00000010112) #19	OTUD7B (ENSFCAG00000010110) #20	MTMR11 (ENSFCAG00000010108) #21	SF3B4 (ENSFCAG00000010106) #22	ENSFCAG00000051403	SV2A (ENSFCAG00000010104) #23	H2BC19 (ENSFCAG00000044074) ##32	ENSFCAG00000047792 #29	H4C14 (ENSFCAG00000023368) ##30	H3C13 (ENSFCAG00000045408) #29	H2BC18 (ENSFCAG00000046241) #32	FCGR1A (ENSFCAG00000027331)	ENSFCAG00000044482	ENSFCAG00000025610 #33	ENSFCAG00000031642 #34	HJV (ENSFCAG00000043881) #35	TXNIP (ENSFCAG00000029919) #36	POLR3GL (ENSFCAG00000005410)	ANKRD34A (ENSFCAG00000002723)