Mus_A	ANCESTRAL SPECIES	2	ENSGT00390000004450 #7	ENSGT00440000039055 #8	ENSGT00940000159874 #9	ENSGT00550000074820.h.p.a #10	ENSGT00940000159730 #11	ENSGT00390000004574 #12	ENSGT00940000158572 #13	ENSGT00940000153451.a.a.a #14	ENSGT00940000157961.C #15	ENSGT00940000157982.b #17	ENSGT00800000125316 #16	ENSGT00940000156314 #18	ENSGT00940000160776 #19	ENSGT00390000012679 #20	ENSGT00940000155246 #21	ENSGT00550000074898 #22	ENSGT00940000153704.B #23	ENSGT00940000160397 #24	ENSGT00940000157439 #25	ENSGT00390000000603 #26	ENSGT00940000161315 #27	ENSGT00390000013474.b.a #28	ENSGT00940000161498 #29	ENSGT00940000159590 #30	ENSGT00390000011219 #31	ENSGT00940000154534.a #32	ENSGT00390000000713 #33	ENSGT00390000004405.b #34	ENSGT00950000182892.a.b.a.a #35	ENSGT00940000153593.c.b.k #36	ENSGT00940000154152.d.b.dc.b #37
Mus_B	ANCESTRAL SPECIES	2	ENSGT00390000004450 #7	ENSGT00440000039055 #8	ENSGT00940000159874 #9	ENSGT00550000074820.h.p.a #10	ENSGT00940000159730 #11	ENSGT00390000004574 #12	ENSGT00940000158572 #13	ENSGT00940000153451.a.a.a #14	ENSGT00940000157961.C #15	ENSGT00940000157982.b #17	ENSGT00800000125316 #16	ENSGT00940000156314 #18	ENSGT00940000160776 #19	ENSGT00390000012679 #20	ENSGT00940000155246 #21	ENSGT00550000074898 #22	ENSGT00940000153704.B #23	ENSGT00940000160397 #24	ENSGT00940000157439 #25	ENSGT00390000000603 #26	ENSGT00940000161315 #27	ENSGT00390000013474.b.a #28	ENSGT00940000161498 #29	ENSGT00940000159590 #30	ENSGT00390000011219 #31	ENSGT00940000154534.a #32	ENSGT00390000000713 #33	ENSGT00390000004405.b #34	ENSGT00950000182892.a.b.a.a #35	ENSGT00940000153593.c.b.k #36	ENSGT00940000154152.d.b.dc.b #37
Mus_C	ANCESTRAL SPECIES	3	ENSGT00390000004450 #7	ENSGT00440000039055 #8	ENSGT00940000159874 #9	ENSGT00550000074820.h.p.a #10	ENSGT00940000159730 #11	ENSGT00390000004574 #12	ENSGT00940000158572 #13	ENSGT00940000153451.a.a.a #14	ENSGT00940000157961.C #15	ENSGT00940000157982.b #17	ENSGT00800000125316 #16	ENSGT00940000156314 #18	ENSGT00940000160776 #19	ENSGT00390000012679 #20	ENSGT00940000155246 #21	ENSGT00550000074898 #22	ENSGT00940000153704.B #23	ENSGT00940000160397 #24	ENSGT00940000157439 #25	ENSGT00390000000603 #26	ENSGT00940000161315 #27	ENSGT00390000013474.b.a #28	ENSGT00940000161498 #29	ENSGT00940000159590 #30	ENSGT00390000011219 #31	ENSGT00940000154534.a #32	ENSGT00390000000713 #33	ENSGT00390000004405.b #34	ENSGT00950000182892.a.b.a.a #35	ENSGT00940000153593.c.b.k #36	ENSGT00940000154152.d.b.dc.b #37
spretus	MODERN SPECIES	2	1700001P01Rik (MGP_SPRETEiJ_G0017911) #7	Cwc25 (MGP_SPRETEiJ_G0017910) #8	Pip4k2b (MGP_SPRETEiJ_G0017909) #9	Psmb3 (MGP_SPRETEiJ_G0017908) #10	Pcgf2 (MGP_SPRETEiJ_G0017907) #11	Cisd3 (MGP_SPRETEiJ_G0017906) #12	Mllt6 (MGP_SPRETEiJ_G0017905) #13	Epop (MGP_SPRETEiJ_G0017904) #14	Srcin1 (MGP_SPRETEiJ_G0017903) #15	MGP_SPRETEiJ_G0017902 #16	Arhgap23 (MGP_SPRETEiJ_G0017901) #17	Socs7 (MGP_SPRETEiJ_G0017900) #18	Gpr179 (MGP_SPRETEiJ_G0017899) #19	Mrpl45 (MGP_SPRETEiJ_G0017898) #20	Npepps (MGP_SPRETEiJ_G0017897) #21	Kpnb1 (MGP_SPRETEiJ_G0017896) #22	Tbkbp1 (MGP_SPRETEiJ_G0017895) #23	Tbx21 (MGP_SPRETEiJ_G0017894) #24	Osbpl7 (MGP_SPRETEiJ_G0017893) #25	Mrpl10 (MGP_SPRETEiJ_G0017892) #26	Lrrc46 (MGP_SPRETEiJ_G0017891) #27	Scrn2 (MGP_SPRETEiJ_G0017890) #28	Sp6 (MGP_SPRETEiJ_G0017889) #29	Sp2 (MGP_SPRETEiJ_G0017888) #30	Pnpo (MGP_SPRETEiJ_G0017887) #31	Prr15l (MGP_SPRETEiJ_G0017886) #32	Cdk5rap3 (MGP_SPRETEiJ_G0017885) #33	Copz2 (MGP_SPRETEiJ_G0017884) #34	Nfe2l1 (MGP_SPRETEiJ_G0017883) #35	MGP_SPRETEiJ_G0017882 #36	Cbx1 (MGP_SPRETEiJ_G0017881) #37
Steppe mouse	MODERN SPECIES	3291	1700001P01Rik (ENSMSIG00000017116) #7	Cwc25 (ENSMSIG00000017131) #8	Pip4k2b (ENSMSIG00000017192) #9	Psmb3 (ENSMSIG00000017213) #10	Pcgf2 (ENSMSIG00000017227) #11	Cisd3 (ENSMSIG00000017247) #12	Mllt6 (ENSMSIG00000017258) #13	Epop (ENSMSIG00000017344) #14	Srcin1 (ENSMSIG00000017360) #15	Arhgap23 (ENSMSIG00000017701) #17	ENSMSIG00000017794 #16	Socs7 (ENSMSIG00000017810) #18	Gpr179 (ENSMSIG00000017852) #19	Mrpl45 (ENSMSIG00000017873) #20	Npepps (ENSMSIG00000017886) #21	Kpnb1 (ENSMSIG00000017971) #22	Tbkbp1 (ENSMSIG00000018040) #23	Tbx21 (ENSMSIG00000018069) #24	Osbpl7 (ENSMSIG00000018093) #25	Mrpl10 (ENSMSIG00000018160) #26	Lrrc46 (ENSMSIG00000018171) #27	Scrn2 (ENSMSIG00000018202) #28	Sp6 (ENSMSIG00000018223) #29	Sp2 (ENSMSIG00000018237) #30	ENSMSIG00000018267 #31	ENSMSIG00000018270 #32	Cdk5rap3 (ENSMSIG00000018309) #33	Copz2 (ENSMSIG00000018337) #34	Nfe2l1 (ENSMSIG00000018374) #35	Cbx1 (ENSMSIG00000018447) #37	ENSMSIG00000018520 #36
Mouse	MODERN SPECIES	2	Rpl23 (ENSMUSG00000071415)	1700001P01Rik (ENSMUSG00000018543) #7	Cwc25 (ENSMUSG00000018541) #8	Pip4k2b (ENSMUSG00000018547) #9	Psmb3 (ENSMUSG00000069744) #10	Pcgf2 (ENSMUSG00000018537) #11	Cisd3 (ENSMUSG00000078695) #12	Mllt6 (ENSMUSG00000038437) #13	Epop (ENSMUSG00000043439) #14	Srcin1 (ENSMUSG00000038453) #15	Arhgap23 (ENSMUSG00000049807) #17	Socs7 (ENSMUSG00000038485) #18	Gpr179 (ENSMUSG00000070337) #19	Mrpl45 (ENSMUSG00000018882) #20	Npepps (ENSMUSG00000001441) #21	Kpnb1 (ENSMUSG00000001440) #22	Tbkbp1 (ENSMUSG00000038517) #23	Tbx21 (ENSMUSG00000001444) #24	Osbpl7 (ENSMUSG00000038534) #25	Mrpl10 (ENSMUSG00000001445) #26	Lrrc46 (ENSMUSG00000020878) #27	Scrn2 (ENSMUSG00000020877) #28	Sp6 (ENSMUSG00000038560) #29	Sp2 (ENSMUSG00000018678) #30	Pnpo (ENSMUSG00000018659) #31	Prr15l (ENSMUSG00000047040) #32	Cdk5rap3 (ENSMUSG00000018669) #33	Copz2 (ENSMUSG00000018672) #34	Nfe2l1 (ENSMUSG00000038615) #35	Cbx1 (ENSMUSG00000018666) #37	Snx11 (ENSMUSG00000020876)
Ryukyu mouse	MODERN SPECIES	2	1700001P01Rik (MGP_CAROLIEiJ_G0017065) #7	Cwc25 (MGP_CAROLIEiJ_G0017064) #8	Pip4k2b (MGP_CAROLIEiJ_G0017063) #9	MGP_CAROLIEiJ_G0017062 ##10	Pcgf2 (MGP_CAROLIEiJ_G0017061) #11	Cisd3 (MGP_CAROLIEiJ_G0017060) #12	Mllt6 (MGP_CAROLIEiJ_G0017059) #13	Epop (MGP_CAROLIEiJ_G0017058) #14	Srcin1 (MGP_CAROLIEiJ_G0017057) #15	MGP_CAROLIEiJ_G0017056 #16	Arhgap23 (MGP_CAROLIEiJ_G0017055) #17	Socs7 (MGP_CAROLIEiJ_G0017054) #18	Gpr179 (MGP_CAROLIEiJ_G0017053) #19	Mrpl45 (MGP_CAROLIEiJ_G0017052) #20	Npepps (MGP_CAROLIEiJ_G0017051) #21	Kpnb1 (MGP_CAROLIEiJ_G0017050) #22	Tbkbp1 (MGP_CAROLIEiJ_G0017049) #23	Tbx21 (MGP_CAROLIEiJ_G0017048) #24	Osbpl7 (MGP_CAROLIEiJ_G0017047) #25	Mrpl10 (MGP_CAROLIEiJ_G0017046) #26	Lrrc46 (MGP_CAROLIEiJ_G0017045) #27	MGP_CAROLIEiJ_G0017044 #28	Sp6 (MGP_CAROLIEiJ_G0017043) #29	Sp2 (MGP_CAROLIEiJ_G0017042) #30	Pnpo (MGP_CAROLIEiJ_G0017041) #31	Prr15l (MGP_CAROLIEiJ_G0017040) #32	Cdk5rap3 (MGP_CAROLIEiJ_G0017039) #33	Copz2 (MGP_CAROLIEiJ_G0017038) #34	Nfe2l1 (MGP_CAROLIEiJ_G0017037) #35	MGP_CAROLIEiJ_G0017036 #36	Cbx1 (MGP_CAROLIEiJ_G0017035) #37