Euarchontoglires_A ANCESTRAL SPECIES 1 ENSGT00940000154479.a ENSGT00390000017480 ENSGT00940000158775 #9 ENSGT00390000014065 #10 ENSGT00940000158970 #11 ENSGT00390000016785 #12 ENSGT01020000230346.E #13 ENSGT00940000157349 #14 ENSGT00940000159754 #15 ENSGT00940000157698.b #16 ENSGT00940000156718 #17 ENSGT00940000159068 #18 ENSGT00940000158446 #19 ENSGT00510000047881 #20 ENSGT00950000182973.b.a #21 ENSGT00940000155568 #22 ENSGT00390000012935 #23 ENSGT00960000189374 ENSGT00940000158287 #24 ENSGT00390000014757 #25 ENSGT00940000154234.b #26 ENSGT00930000151062 #27 ENSGT00940000160630 #28 ENSGT00390000007055 #29 ENSGT00940000154348.c.b.a ENSGT00390000016223 #31 ENSGT00940000160394.a #32 ENSGT00390000007640.b #33 ENSGT00940000156152 #34 ENSGT00940000159848 #36 ENSGT00940000156124 Glires ANCESTRAL SPECIES 1 ENSGT00940000154479.a ENSGT00390000017480 ENSGT00940000158775 #9 ENSGT00390000014065 #10 ENSGT00940000158970 #11 ENSGT00390000016785 #12 ENSGT01020000230346.E #13 ENSGT00940000157349 #14 ENSGT00940000159754 #15 ENSGT00940000157698.b #16 ENSGT00940000156718 #17 ENSGT00940000159068 #18 ENSGT00940000158446 #19 ENSGT00510000047881 #20 ENSGT00950000182973.b.a #21 ENSGT00940000155568 #22 ENSGT00390000012935 #23 ENSGT00960000189374 ENSGT00940000158287 #24 ENSGT00390000014757 #25 ENSGT00940000154234.b #26 ENSGT00930000151062 #27 ENSGT00940000160630 #28 ENSGT00390000007055 #29 ENSGT00940000154348.c.b.a ENSGT00390000016223 #31 ENSGT00940000160394.a #32 ENSGT00390000007640.b #33 ENSGT00940000156152 #34 ENSGT00940000159848 #36 ENSGT00940000156124 Rodentia ANCESTRAL SPECIES 1 ENSGT00940000154479.a ENSGT00390000017480 ENSGT00940000158775 #9 ENSGT00390000014065 #10 ENSGT00940000158970 #11 ENSGT00390000016785 #12 ENSGT01020000230346.E #13 ENSGT00940000157349 #14 ENSGT00940000159754 #15 ENSGT00940000157698.b #16 ENSGT00940000156718 #17 ENSGT00940000159068 #18 ENSGT00940000158446 #19 ENSGT00510000047881 #20 ENSGT00950000182973.b.a #21 ENSGT00940000155568 #22 ENSGT00390000012935 #23 ENSGT00960000189374 ENSGT00940000158287 #24 ENSGT00390000014757 #25 ENSGT00940000154234.b #26 ENSGT00930000151062 #27 ENSGT00940000160630 #28 ENSGT00390000007055 #29 ENSGT00940000154348.c.b.a ENSGT00390000016223 #31 ENSGT00940000160394.a #32 ENSGT00390000007640.b #33 ENSGT00940000156152 #34 ENSGT00860000136066 #35 ENSGT00940000159848 #36 Rodentia_B ANCESTRAL SPECIES 5 ENSGT00940000161832.a #8 ENSGT00390000017480 ENSGT00940000158775 #9 ENSGT00390000014065 #10 ENSGT00940000158970 #11 ENSGT00390000016785 #12 ENSGT01020000230346.E #13 ENSGT00940000157349 #14 ENSGT00940000159754 #15 ENSGT00940000157698.b #16 ENSGT00940000156718 #17 ENSGT00940000159068 #18 ENSGT00940000158446 #19 ENSGT00510000047881 #20 ENSGT00950000182973.b.a #21 ENSGT00940000155568 #22 ENSGT00390000012935 #23 ENSGT00960000189374 ENSGT00940000158287 #24 ENSGT00390000014757 #25 ENSGT00940000154234.b #26 ENSGT00930000151062 #27 ENSGT00940000160630 #28 ENSGT00390000007055 #29 ENSGT00940000154348.c.b.a ENSGT00390000016223 #31 ENSGT00940000160394.a #32 ENSGT00390000007640.b #33 ENSGT00940000156152 #34 ENSGT00860000136066 #35 ENSGT00940000159848 #36 Kangaroo rat MODERN SPECIES 444 Mtch2 (ENSDORG00000001511) #7 C1qtnf4 (ENSDORG00000015597) #8 Kbtbd4 (ENSDORG00000015593) #9 Ptpmt1 (ENSDORG00000015591) #10 Celf1 (ENSDORG00000013721) #11 Rapsn (ENSDORG00000000757) #12 Psmc3 (ENSDORG00000000756) #13 Slc39a13 (ENSDORG00000000753) #14 Spi1 (ENSDORG00000007758) #15 Mybpc3 (ENSDORG00000007751) #16 Madd (ENSDORG00000007749) #17 Nr1h3 (ENSDORG00000007747) #18 Acp2 (ENSDORG00000007743) #19 Ddb2 (ENSDORG00000007741) #20 ENSDORG00000013060 #21 Arfgap2 (ENSDORG00000013057) #22 Cstpp1 (ENSDORG00000013052) #23 Lrp4 (ENSDORG00000001785) #24 Ckap5 (ENSDORG00000011373) #25 F2 (ENSDORG00000029579) #26 Zfp408 (ENSDORG00000000387) #27 Arhgap1 (ENSDORG00000000385) #28 Atg13 (ENSDORG00000000382) #29 ENSDORG00000028941 #30 Ambra1 (ENSDORG00000008382) #31 Chrm4 (ENSDORG00000024984) #32 Mdk (ENSDORG00000029447) #33 Dgkz (ENSDORG00000008377) #34 ENSDORG00000028371 #35 Creb3l1 (ENSDORG00000023541) #36 ENSDORG00000025559 #37 Myomorpha ANCESTRAL SPECIES 4 ENSGT00940000161832.a #8 ENSGT00390000017480 ENSGT00940000158775 #9 ENSGT00390000014065 #10 ENSGT00940000158970 #11 ENSGT00390000016785 #12 ENSGT01020000230346.E #13 ENSGT00940000157349 #14 ENSGT00940000159754 #15 ENSGT00940000157698.b #16 ENSGT00940000156718 #17 ENSGT00940000159068 #18 ENSGT00940000158446 #19 ENSGT00510000047881 #20 ENSGT00950000182973.b.a #21 ENSGT00940000155568 #22 ENSGT00390000012935 #23 ENSGT00960000189374 ENSGT00940000158287 #24 ENSGT00390000014757 #25 ENSGT00940000154234.b #26 ENSGT00930000151062 #27 ENSGT00940000160630 #28 ENSGT00390000007055 #29 ENSGT00940000154348.c.b.a ENSGT00390000016223 #31 ENSGT00940000160394.a #32 ENSGT00390000007640.b #33 ENSGT00940000156152 #34 ENSGT00860000136066 #35 ENSGT00940000159848 #36 Muroidea ANCESTRAL SPECIES 2 ENSGT00940000161832.a #8 ENSGT00390000017480 ENSGT00940000158775 #9 ENSGT00390000014065 #10 ENSGT00940000158970 #11 ENSGT00390000016785 #12 ENSGT01020000230346.E #13 ENSGT00940000157349 #14 ENSGT00940000159754 #15 ENSGT00940000157698.b #16 ENSGT00940000156718 #17 ENSGT00940000159068 #18 ENSGT00940000158446 #19 ENSGT00510000047881 #20 ENSGT00950000182973.b.a #21 ENSGT00940000155568 #22 ENSGT00390000012935 #23 ENSGT00960000189374 ENSGT00940000158287 #24 ENSGT00390000014757 #25 ENSGT00940000154234.b #26 ENSGT00930000151062 #27 ENSGT00940000160630 #28 ENSGT00390000007055 #29 ENSGT00940000154348.c.b.a ENSGT00390000016223 #31 ENSGT00940000160394.a #32 ENSGT00390000007640.b #33 ENSGT00940000156152 #34 ENSGT00860000136066 #35 ENSGT00940000159848 #36 Muroidea_A ANCESTRAL SPECIES 2 ENSGT00940000161832.a #8 ENSGT00390000017480 ENSGT00940000158775 #9 ENSGT00390000014065 #10 ENSGT00940000158970 #11 ENSGT00390000016785 #12 ENSGT01020000230346.E #13 ENSGT00940000157349 #14 ENSGT00940000159754 #15 ENSGT00940000157698.b #16 ENSGT00940000156718 #17 ENSGT00940000159068 #18 ENSGT00940000158446 #19 ENSGT00510000047881 #20 ENSGT00950000182973.b.a #21 ENSGT00940000155568 #22 ENSGT00390000012935 #23 ENSGT00960000189374 ENSGT00940000158287 #24 ENSGT00390000014757 #25 ENSGT00940000154234.b #26 ENSGT00930000151062 #27 ENSGT00940000160630 #28 ENSGT00390000007055 #29 ENSGT00940000154348.c.b.a ENSGT00390000016223 #31 ENSGT00940000160394.a #32 ENSGT00390000007640.b #33 ENSGT00940000156152 #34 ENSGT00860000136066 #35 ENSGT00940000159848 #36 Cricetidae ANCESTRAL SPECIES 5 ENSGT00940000161832.a #8 ENSGT00390000017480 ENSGT00940000158775 #9 ENSGT00390000014065 #10 ENSGT00940000158970 #11 ENSGT00390000016785 #12 ENSGT01020000230346.E #13 ENSGT00940000157349 #14 ENSGT00940000159754 #15 ENSGT00940000157698.b #16 ENSGT00940000156718 #17 ENSGT00940000159068 #18 ENSGT00940000158446 #19 ENSGT00510000047881 #20 ENSGT00950000182973.b.a #21 ENSGT00940000155568 #22 ENSGT00390000012935 #23 ENSGT00940000158287 #24 ENSGT00390000014757 #25 ENSGT00940000154234.b #26 ENSGT00930000151062 #27 ENSGT00940000160630 #28 ENSGT00390000007055 #29 ENSGT00940000154348.c.b.a ENSGT00390000016223 #31 ENSGT00940000160394.a #32 ENSGT00390000007640.b #33 ENSGT00940000156152 #34 ENSGT00860000136066 #35 ENSGT00940000159848 #36 ENSGT00940000156124 Cricetidae_B ANCESTRAL SPECIES 34 ENSGT00940000161832.a #8 ENSGT00390000017480 ENSGT00940000158775 #9 ENSGT00390000014065 #10 ENSGT00940000158970 #11 ENSGT00390000016785 #12 ENSGT01020000230346.E #13 ENSGT00940000157349 #14 ENSGT00940000159754 #15 ENSGT00940000157698.b #16 ENSGT00940000156718 #17 ENSGT00940000159068 #18 ENSGT00940000158446 #19 ENSGT00510000047881 #20 ENSGT00950000182973.b.a #21 ENSGT00940000155568 #22 ENSGT00390000012935 #23 ENSGT00940000158287 #24 ENSGT00390000014757 #25 ENSGT00940000154234.b #26 ENSGT00930000151062 #27 ENSGT00940000160630 #28 ENSGT00390000007055 #29 ENSGT00940000154348.c.b.a ENSGT00390000016223 #31 ENSGT00940000160394.a #32 ENSGT00390000007640.b #33 ENSGT00940000156152 #34 ENSGT00940000159848 #36 ENSGT00940000156124 ENSGT00940000158758 Prairie vole MODERN SPECIES 81 Ndufs3 (ENSMOCG00000009375) Kbtbd4 (ENSMOCG00000021780) #9 Ptpmt1 (ENSMOCG00000018913) #10 Celf1 (ENSMOCG00000012633) #11 Rapsn (ENSMOCG00000012267) #12 Psmc3 (ENSMOCG00000001464) #13 ENSMOCG00000006097 #14 ENSMOCG00000008195 #14 Spi1 (ENSMOCG00000006114) #15 Mybpc3 (ENSMOCG00000008344) #16 Madd (ENSMOCG00000003278) #17 Nr1h3 (ENSMOCG00000010671) #18 Acp2 (ENSMOCG00000002882) #19 Ddb2 (ENSMOCG00000021291) #20 Pacsin3 (ENSMOCG00000022577) #21 Arfgap2 (ENSMOCG00000016700) #22 Cstpp1 (ENSMOCG00000006672) #23 Lrp4 (ENSMOCG00000005823) #24 Ckap5 (ENSMOCG00000022214) #25 F2 (ENSMOCG00000019585) #26 Arhgap1 (ENSMOCG00000008533) #28 Atg13 (ENSMOCG00000018209) #29 ENSMOCG00000007253 #30 Ambra1 (ENSMOCG00000018792) #31 Chrm4 (ENSMOCG00000016103) #32 Mdk (ENSMOCG00000014474) #33 Dgkz (ENSMOCG00000000694) #34 Creb3l1 (ENSMOCG00000012802) #36 Phf21a (ENSMOCG00000018126) Large2 (ENSMOCG00000004366) Pex16 (ENSMOCG00000015385) Northern American deer mouse MODERN SPECIES 17 Mtch2 (ENSPEMG00000010063) #7 C1qtnf4 (ENSPEMG00000024602) #8 Ndufs3 (ENSPEMG00000007248) Kbtbd4 (ENSPEMG00000001992) #9 Ptpmt1 (ENSPEMG00000030250) #10 Celf1 (ENSPEMG00000015644) #11 Rapsn (ENSPEMG00000016952) #12 Slc39a13 (ENSPEMG00000016290) #14 Spi1 (ENSPEMG00000009647) #15 Mybpc3 (ENSPEMG00000009479) #16 Madd (ENSPEMG00000001264) #17 Nr1h3 (ENSPEMG00000018824) #18 Acp2 (ENSPEMG00000011860) #19 Ddb2 (ENSPEMG00000012899) #20 Pacsin3 (ENSPEMG00000018424) #21 Arfgap2 (ENSPEMG00000009220) #22 Cstpp1 (ENSPEMG00000018931) #23 Lrp4 (ENSPEMG00000015598) #24 Ckap5 (ENSPEMG00000007231) #25 F2 (ENSPEMG00000018118) #26 Zfp408 (ENSPEMG00000016757) #27 Arhgap1 (ENSPEMG00000011370) #28 Atg13 (ENSPEMG00000017021) #29 Harbi1 (ENSPEMG00000013606) ENSPEMG00000025318 Ambra1 (ENSPEMG00000005111) #31 Chrm4 (ENSPEMG00000028345) #32 Mdk (ENSPEMG00000014123) #33 Dgkz (ENSPEMG00000009628) #34 Creb3l1 (ENSPEMG00000019031) #36 Phf21a (ENSPEMG00000004446) Cricetinae ANCESTRAL SPECIES 1 ENSGT00940000161832.a #8 ENSGT00390000017480 ENSGT00940000158775 #9 ENSGT00390000014065 #10 ENSGT00940000158970 #11 ENSGT00390000016785 #12 ENSGT01020000230346.E #13 ENSGT00940000157349 #14 ENSGT00940000159754 #15 ENSGT00940000157698.b #16 ENSGT00940000156718 #17 ENSGT00940000159068 #18 ENSGT00940000158446 #19 ENSGT00510000047881 #20 ENSGT00950000182973.b.a #21 ENSGT00940000155568 #22 ENSGT00390000012935 #23 ENSGT00940000158287 #24 ENSGT00390000014757 #25 ENSGT00940000154234.b #26 ENSGT00930000151062 #27 ENSGT00940000160630 #28 ENSGT00390000007055 #29 ENSGT00940000154348.c.b.a ENSGT00390000016223 #31 ENSGT00940000160394.a #32 ENSGT00390000007640.b #33 ENSGT00940000156152 #34 ENSGT00860000136066 #35 ENSGT00940000159848 #36 ENSGT00940000156124 Chinese hamster chok1gshd MODERN SPECIES 188 C1qtnf4 (ENSCGRG00001007540) #8 Ndufs3 (ENSCGRG00001024136) Kbtbd4 (ENSCGRG00001023919) #9 Ptpmt1 (ENSCGRG00001012152) #10 Celf1 (ENSCGRG00001011274) #11 Rapsn (ENSCGRG00001009650) #12 Psmc3 (ENSCGRG00001005657) #13 Slc39a13 (ENSCGRG00001003447) #14 Spi1 (ENSCGRG00001009684) #15 Mybpc3 (ENSCGRG00001006702) #16 Madd (ENSCGRG00001024681) #17 Nr1h3 (ENSCGRG00001022656) #18 Acp2 (ENSCGRG00001022138) #19 Ddb2 (ENSCGRG00001012939) #20 Pacsin3 (ENSCGRG00001011840) #21 Arfgap2 (ENSCGRG00001010700) #22 Cstpp1 (ENSCGRG00001020042) #23 Lrp4 (ENSCGRG00001018783) #24 Ckap5 (ENSCGRG00001013368) #25 F2 (ENSCGRG00001023426) #26 Zfp408 (ENSCGRG00001023588) #27 Arhgap1 (ENSCGRG00001023260) #28 ENSCGRG00001022859 Atg13 (ENSCGRG00001022112) #29 Harbi1 (ENSCGRG00001021313) Ambra1 (ENSCGRG00001020313) #31 Chrm4 (ENSCGRG00001012019) #32 Mdk (ENSCGRG00001022566) #33 ENSCGRG00001011874 #35 Dgkz (ENSCGRG00001021082) #34 Creb3l1 (ENSCGRG00001011598) #36 Golden Hamster MODERN SPECIES 618 C1qtnf4 (ENSMAUG00000009128) #8 Ndufs3 (ENSMAUG00000010036) Kbtbd4 (ENSMAUG00000009694) #9 Ptpmt1 (ENSMAUG00000010436) #10 Celf1 (ENSMAUG00000009468) #11 Rapsn (ENSMAUG00000008690) #12 Psmc3 (ENSMAUG00000007346) #13 ENSMAUG00000009110 #14 Spi1 (ENSMAUG00000008854) #15 Mybpc3 (ENSMAUG00000008229) #16 Madd (ENSMAUG00000009156) #17 Nr1h3 (ENSMAUG00000008657) #18 Acp2 (ENSMAUG00000007767) #19 Ddb2 (ENSMAUG00000010179) #20 Pacsin3 (ENSMAUG00000009572) #21 Arfgap2 (ENSMAUG00000009218) #22 ENSMAUG00000008870 ENSMAUG00000008742 Cstpp1 (ENSMAUG00000008635) #23 Lrp4 (ENSMAUG00000016435) #24 Ckap5 (ENSMAUG00000012944) #25 F2 (ENSMAUG00000009414) #26 Arhgap1 (ENSMAUG00000012048) #28 Atg13 (ENSMAUG00000011052) #29 Harbi1 (ENSMAUG00000012193) Ambra1 (ENSMAUG00000008821) #31 Chrm4 (ENSMAUG00000007510) #32 Mdk (ENSMAUG00000006759) #33 Dgkz (ENSMAUG00000008433) #34 Creb3l1 (ENSMAUG00000003224) #36 Phf21a (ENSMAUG00000011351) Murinae ANCESTRAL SPECIES 1 ENSGT00940000161832.a #8 ENSGT00390000017480 ENSGT00940000158775 #9 ENSGT00390000014065 #10 ENSGT00940000158970 #11 ENSGT00390000016785 #12 ENSGT01020000230346.E #13 ENSGT00940000157349 #14 ENSGT00940000159754 #15 ENSGT00940000157698.b #16 ENSGT00940000156718 #17 ENSGT00940000159068 #18 ENSGT00940000158446 #19 ENSGT00510000047881 #20 ENSGT00950000182973.b.a #21 ENSGT00940000155568 #22 ENSGT00390000012935 #23 ENSGT00960000189374 ENSGT00940000158287 #24 ENSGT00390000014757 #25 ENSGT00940000154234.b #26 ENSGT00930000151062 #27 ENSGT00940000160630 #28 ENSGT00390000007055 #29 ENSGT00940000154348.c.b.a ENSGT00390000016223 #31 ENSGT00940000160394.a #32 ENSGT00390000007640.b #33 ENSGT00940000156152 #34 ENSGT00860000136066 #35 ENSGT00940000159848 #36 Mus ANCESTRAL SPECIES 1 ENSGT00940000161832.a #8 ENSGT00390000017480 ENSGT00940000158775 #9 ENSGT00390000014065 #10 ENSGT00940000158970 #11 ENSGT00390000016785 #12 ENSGT01020000230346.E #13 ENSGT00940000157349 #14 ENSGT00940000159754 #15 ENSGT00940000157698.b #16 ENSGT00940000156718 #17 ENSGT00940000159068 #18 ENSGT00940000158446 #19 ENSGT00510000047881 #20 ENSGT00950000182973.b.a #21 ENSGT00940000155568 #22 ENSGT00390000012935 #23 ENSGT00960000189374 ENSGT00940000158287 #24 ENSGT00390000014757 #25 ENSGT00940000154234.b #26 ENSGT00930000151062 #27 ENSGT00940000160630 #28 ENSGT00390000007055 #29 ENSGT00940000154348.c.b.a ENSGT00390000016223 #31 ENSGT00940000160394.a #32 ENSGT00390000007640.b #33 ENSGT00940000156152 #34 ENSGT00860000136066 #35 ENSGT00940000159848 #36 Mus_A ANCESTRAL SPECIES ENSGT00940000161832.a #8 ENSGT00390000017480 ENSGT00940000158775 #9 ENSGT00390000014065 #10 ENSGT00940000158970 #11 ENSGT00390000016785 #12 ENSGT01020000230346.E #13 ENSGT00940000157349 #14 ENSGT00940000159754 #15 ENSGT00940000157698.b #16 ENSGT00940000156718 #17 ENSGT00940000159068 #18 ENSGT00940000158446 #19 ENSGT00510000047881 #20 ENSGT00950000182973.b.a #21 ENSGT00940000155568 #22 ENSGT00390000012935 #23 ENSGT00960000189374 ENSGT00940000158287 #24 ENSGT00390000014757 #25 ENSGT00940000154234.b #26 ENSGT00930000151062 #27 ENSGT00940000160630 #28 ENSGT00390000007055 #29 ENSGT00940000154348.c.b.a ENSGT00390000016223 #31 ENSGT00940000160394.a #32 ENSGT00390000007640.b.g #33 ENSGT00940000156152 #34 ENSGT00860000136066 #35 ENSGT00940000159848 #36 Mus_B ANCESTRAL SPECIES 1 ENSGT00940000161832.a #8 ENSGT00390000017480 ENSGT00940000158775 #9 ENSGT00390000014065 #10 ENSGT00940000158970 #11 ENSGT00390000016785 #12 ENSGT01020000230346.E #13 ENSGT00940000157349 #14 ENSGT00940000159754 #15 ENSGT00940000157698.b #16 ENSGT00940000156718 #17 ENSGT00940000159068 #18 ENSGT00940000158446 #19 ENSGT00510000047881 #20 ENSGT00950000182973.b.a #21 ENSGT00940000155568 #22 ENSGT00390000012935 #23 ENSGT00960000189374 ENSGT00940000158287 #24 ENSGT00390000014757 #25 ENSGT00940000154234.b #26 ENSGT00930000151062 #27 ENSGT00940000160630 #28 ENSGT00390000007055 #29 ENSGT00940000154348.c.b.a ENSGT00390000016223 #31 ENSGT00940000160394.a #32 ENSGT00390000007640.b.g #33 ENSGT00940000156152 #34 ENSGT00860000136066 #35 ENSGT00940000159848 #36 Mouse MODERN SPECIES 11 C1qtnf4 (ENSMUSG00000040794) #8 Ndufs3 (ENSMUSG00000005510) Kbtbd4 (ENSMUSG00000005505) #9 Ptpmt1 (ENSMUSG00000063235) #10 Celf1 (ENSMUSG00000005506) #11 Rapsn (ENSMUSG00000002104) #12 Psmc3 (ENSMUSG00000002102) #13 Slc39a13 (ENSMUSG00000002105) #14 Spi1 (ENSMUSG00000002111) #15 Mybpc3 (ENSMUSG00000002100) #16 Madd (ENSMUSG00000040687) #17 Nr1h3 (ENSMUSG00000002108) #18 Acp2 (ENSMUSG00000002103) #19 Ddb2 (ENSMUSG00000002109) #20 Pacsin3 (ENSMUSG00000027257) #21 Arfgap2 (ENSMUSG00000027255) #22 Cstpp1 (ENSMUSG00000040591) #23 Lrp4 (ENSMUSG00000027253) #24 Ckap5 (ENSMUSG00000040549) #25 F2 (ENSMUSG00000027249) #26 Zfp408 (ENSMUSG00000075040) #27 Arhgap1 (ENSMUSG00000027247) #28 Atg13 (ENSMUSG00000027244) #29 Harbi1 (ENSMUSG00000027243) Ambra1 (ENSMUSG00000040506) #31 Chrm4 (ENSMUSG00000040495) #32 Mdk (ENSMUSG00000027239) #33 Dgkz (ENSMUSG00000040479) #34 Creb3l1 (ENSMUSG00000027230) #36 Phf21a (ENSMUSG00000058318) Large2 (ENSMUSG00000040434) Mus_C ANCESTRAL SPECIES ENSGT00940000161832.a #8 ENSGT00390000017480 ENSGT00940000158775 #9 ENSGT00390000014065 #10 ENSGT00940000158970 #11 ENSGT00390000016785 #12 ENSGT01020000230346.E #13 ENSGT00940000157349 #14 ENSGT00940000159754 #15 ENSGT00940000157698.b #16 ENSGT00940000156718 #17 ENSGT00940000159068 #18 ENSGT00940000158446 #19 ENSGT00510000047881 #20 ENSGT00950000182973.b.a #21 ENSGT00940000155568 #22 ENSGT00390000012935 #23 ENSGT00960000189374 ENSGT00940000158287 #24 ENSGT00390000014757 #25 ENSGT00940000154234.b #26 ENSGT00930000151062 #27 ENSGT00940000160630 #28 ENSGT00390000007055 #29 ENSGT00940000154348.c.b.a ENSGT00390000016223 #31 ENSGT00940000160394.a #32 ENSGT00390000007640.b.g #33 ENSGT00940000156152 #34 ENSGT00860000136066 #35 ENSGT00940000159848 #36 spretus MODERN SPECIES 11 Mtch2 (MGP_SPRETEiJ_G0024855) #7 C1qtnf4 (MGP_SPRETEiJ_G0024856) #8 Ndufs3 (MGP_SPRETEiJ_G0024857) Kbtbd4 (MGP_SPRETEiJ_G0024858) #9 Celf1 (MGP_SPRETEiJ_G0024859) #11 Rapsn (MGP_SPRETEiJ_G0024860) #12 Psmc3 (MGP_SPRETEiJ_G0024861) #13 Slc39a13 (MGP_SPRETEiJ_G0024862) #14 Spi1 (MGP_SPRETEiJ_G0024863) #15 Mybpc3 (MGP_SPRETEiJ_G0024864) #16 Madd (MGP_SPRETEiJ_G0024865) #17 Nr1h3 (MGP_SPRETEiJ_G0024866) #18 Acp2 (MGP_SPRETEiJ_G0024867) #19 Ddb2 (MGP_SPRETEiJ_G0024868) #20 Pacsin3 (MGP_SPRETEiJ_G0024869) #21 Arfgap2 (MGP_SPRETEiJ_G0024870) #22 Cstpp1 (MGP_SPRETEiJ_G0024871) #23 Lrp4 (MGP_SPRETEiJ_G0024872) #24 Ckap5 (MGP_SPRETEiJ_G0024873) #25 F2 (MGP_SPRETEiJ_G0024874) #26 Zfp408 (MGP_SPRETEiJ_G0024875) #27 Arhgap1 (MGP_SPRETEiJ_G0024876) #28 Atg13 (MGP_SPRETEiJ_G0024877) #29 Harbi1 (MGP_SPRETEiJ_G0024878) Ambra1 (MGP_SPRETEiJ_G0024879) #31 Chrm4 (MGP_SPRETEiJ_G0024880) #32 Mdk (MGP_SPRETEiJ_G0024881) #33 Dgkz (MGP_SPRETEiJ_G0024882) #34 MGP_SPRETEiJ_G0024883 #35 Creb3l1 (MGP_SPRETEiJ_G0024884) #36 Phf21a (MGP_SPRETEiJ_G0024885) Steppe mouse MODERN SPECIES 36 Ndufs3 (ENSMSIG00000027630) Kbtbd4 (ENSMSIG00000027623) #9 ENSMSIG00000027615 #10 Celf1 (ENSMSIG00000027572) #11 ENSMSIG00000027554 Rapsn (ENSMSIG00000027530) #12 Psmc3 (ENSMSIG00000027459) #13 Slc39a13 (ENSMSIG00000027429) #14 Spi1 (ENSMSIG00000027421) #15 Mybpc3 (ENSMSIG00000027308) #16 Madd (ENSMSIG00000021063) #17 Nr1h3 (ENSMSIG00000020950) #18 Acp2 (ENSMSIG00000020936) #19 Ddb2 (ENSMSIG00000020921) #20 Pacsin3 (ENSMSIG00000020892) #21 Arfgap2 (ENSMSIG00000020760) #22 ENSMSIG00000020727 #23 ENSMSIG00000020721 Lrp4 (ENSMSIG00000020667) #24 ENSMSIG00000020658 Ckap5 (ENSMSIG00000020211) #25 F2 (ENSMSIG00000020083) #26 Zfp408 (ENSMSIG00000020068) #27 Arhgap1 (ENSMSIG00000020000) #28 Atg13 (ENSMSIG00000019915) #29 Harbi1 (ENSMSIG00000019911) Ambra1 (ENSMSIG00000019820) #31 Chrm4 (ENSMSIG00000019816) #32 Mdk (ENSMSIG00000019785) #33 ENSMSIG00000019782 #35 Dgkz (ENSMSIG00000019366) #34 Ryukyu mouse MODERN SPECIES 11 Mtch2 (MGP_CAROLIEiJ_G0023944) #7 Madd (MGP_CAROLIEiJ_G0023945) #17 C1qtnf4 (MGP_CAROLIEiJ_G0023946) #8 Ndufs3 (MGP_CAROLIEiJ_G0023947) Kbtbd4 (MGP_CAROLIEiJ_G0023948) #9 Celf1 (MGP_CAROLIEiJ_G0023949) #11 Rapsn (MGP_CAROLIEiJ_G0023950) #12 Psmc3 (MGP_CAROLIEiJ_G0023951) #13 Slc39a13 (MGP_CAROLIEiJ_G0023952) #14 Spi1 (MGP_CAROLIEiJ_G0023953) #15 Mybpc3 (MGP_CAROLIEiJ_G0023954) #16 Nr1h3 (MGP_CAROLIEiJ_G0023955) #18 Acp2 (MGP_CAROLIEiJ_G0023956) #19 Ddb2 (MGP_CAROLIEiJ_G0023957) #20 Pacsin3 (MGP_CAROLIEiJ_G0023958) #21 Arfgap2 (MGP_CAROLIEiJ_G0023959) #22 Cstpp1 (MGP_CAROLIEiJ_G0023960) #23 MGP_CAROLIEiJ_G0023961 Lrp4 (MGP_CAROLIEiJ_G0023962) #24 Ckap5 (MGP_CAROLIEiJ_G0023963) #25 F2 (MGP_CAROLIEiJ_G0023964) #26 Zfp408 (MGP_CAROLIEiJ_G0023965) #27 Arhgap1 (MGP_CAROLIEiJ_G0023966) #28 Atg13 (MGP_CAROLIEiJ_G0023967) #29 Harbi1 (MGP_CAROLIEiJ_G0023968) Ambra1 (MGP_CAROLIEiJ_G0023969) #31 Chrm4 (MGP_CAROLIEiJ_G0023970) #32 Mdk (MGP_CAROLIEiJ_G0023971) #33 Dgkz (MGP_CAROLIEiJ_G0023972) #34 MGP_CAROLIEiJ_G0023973 #35 Creb3l1 (MGP_CAROLIEiJ_G0023974) #36 Shrew mouse MODERN SPECIES 16 Mtch2 (MGP_PahariEiJ_G0025381) #7 C1qtnf4 (MGP_PahariEiJ_G0025382) #8 Ndufs3 (MGP_PahariEiJ_G0025383) Kbtbd4 (MGP_PahariEiJ_G0025384) #9 Celf1 (MGP_PahariEiJ_G0025385) #11 Rapsn (MGP_PahariEiJ_G0025386) #12 Psmc3 (MGP_PahariEiJ_G0025387) #13 Slc39a13 (MGP_PahariEiJ_G0025388) #14 Spi1 (MGP_PahariEiJ_G0025389) #15 Mybpc3 (MGP_PahariEiJ_G0025390) #16 Madd (MGP_PahariEiJ_G0025391) #17 Nr1h3 (MGP_PahariEiJ_G0025392) #18 Acp2 (MGP_PahariEiJ_G0025393) #19 Ddb2 (MGP_PahariEiJ_G0025394) #20 Pacsin3 (MGP_PahariEiJ_G0025395) #21 Arfgap2 (MGP_PahariEiJ_G0025396) #22 Cstpp1 (MGP_PahariEiJ_G0025397) #23 MGP_PahariEiJ_G0025398 Lrp4 (MGP_PahariEiJ_G0025399) #24 Ckap5 (MGP_PahariEiJ_G0025400) #25 F2 (MGP_PahariEiJ_G0025401) #26 Zfp408 (MGP_PahariEiJ_G0025402) #27 Arhgap1 (MGP_PahariEiJ_G0025403) #28 Atg13 (MGP_PahariEiJ_G0025404) #29 Harbi1 (MGP_PahariEiJ_G0025405) Ambra1 (MGP_PahariEiJ_G0025406) #31 Chrm4 (MGP_PahariEiJ_G0025407) #32 Mdk (MGP_PahariEiJ_G0025408) #33 Dgkz (MGP_PahariEiJ_G0025409) #34 MGP_PahariEiJ_G0025410 #35 Creb3l1 (MGP_PahariEiJ_G0025411) #36 Rat MODERN SPECIES 13 C1qtnf4 (ENSRNOG00000069579) #8 Ndufs3 (ENSRNOG00000009155) Kbtbd4 (ENSRNOG00000009397) #9 Ptpmt1 (ENSRNOG00000009723) #10 Celf1 (ENSRNOG00000010379) #11 Rapsn (ENSRNOG00000011208) #12 Psmc3 (ENSRNOG00000011414) #13 Slc39a13 (ENSRNOG00000011981) #14 Spi1 (ENSRNOG00000012172) #15 Mybpc3 (ENSRNOG00000012307) #16 Madd (ENSRNOG00000012568) #17 Nr1h3 (ENSRNOG00000013172) #18 Acp2 (ENSRNOG00000013594) #19 Ddb2 (ENSRNOG00000014071) #20 Pacsin3 (ENSRNOG00000014204) #21 Arfgap2 (ENSRNOG00000014429) #22 Cstpp1 (ENSRNOG00000014798) #23 Lrp4 (ENSRNOG00000015285) #24 Ckap5 (ENSRNOG00000016067) #25 F2 (ENSRNOG00000016325) #26 ENSRNOG00000070459 #27 Arhgap1 (ENSRNOG00000016610) #28 Atg13 (ENSRNOG00000016984) #29 Ambra1 (ENSRNOG00000017422) #31 Chrm4 (ENSRNOG00000017556) #32 Mdk (ENSRNOG00000017560) #33 Dgkz (ENSRNOG00000017737) #34 Creb3l1 (ENSRNOG00000005413) #36 Phf21a (ENSRNOG00000006063) Large2 (ENSRNOG00000006353) Pex16 (ENSRNOG00000006539) Upper Galilee mountains blind mole rat MODERN SPECIES 1238 Ndufs3 (ENSNGAG00000012046) Kbtbd4 (ENSNGAG00000000276) #9 Ptpmt1 (ENSNGAG00000017776) #10 ENSNGAG00000018260 Celf1 (ENSNGAG00000017390) #11 Rapsn (ENSNGAG00000007295) #12 Psmc3 (ENSNGAG00000017843) #13 Slc39a13 (ENSNGAG00000017536) #14 Spi1 (ENSNGAG00000010713) #15 Mybpc3 (ENSNGAG00000000260) #16 Madd (ENSNGAG00000017768) #17 Nr1h3 (ENSNGAG00000015402) #18 Acp2 (ENSNGAG00000007455) #19 Ddb2 (ENSNGAG00000017336) #20 Pacsin3 (ENSNGAG00000014205) #21 Arfgap2 (ENSNGAG00000009124) #22 Cstpp1 (ENSNGAG00000000171) #23 Lrp4 (ENSNGAG00000020436) #24 Ckap5 (ENSNGAG00000001579) #25 F2 (ENSNGAG00000010351) #26 Zfp408 (ENSNGAG00000000309) #27 Arhgap1 (ENSNGAG00000013969) #28 Atg13 (ENSNGAG00000015785) #29 ENSNGAG00000012504 Lesser Egyptian jerboa MODERN SPECIES 62 Mtch2 (ENSJJAG00000011880) #7 C1qtnf4 (ENSJJAG00000023278) #8 Ndufs3 (ENSJJAG00000023557) Kbtbd4 (ENSJJAG00000020543) #9 Celf1 (ENSJJAG00000020280) #11 Rapsn (ENSJJAG00000020297) #12 Psmc3 (ENSJJAG00000021354) #13 Slc39a13 (ENSJJAG00000007370) #14 Spi1 (ENSJJAG00000019221) #15 Mybpc3 (ENSJJAG00000018706) #16 Madd (ENSJJAG00000015606) #17 Nr1h3 (ENSJJAG00000020697) #18 Acp2 (ENSJJAG00000019515) #19 Ddb2 (ENSJJAG00000016552) #20 Pacsin3 (ENSJJAG00000023252) #21 Arfgap2 (ENSJJAG00000003129) #22 Cstpp1 (ENSJJAG00000008330) #23 Lrp4 (ENSJJAG00000014851) #24 Ckap5 (ENSJJAG00000023265) #25 F2 (ENSJJAG00000005619) #26 Zfp408 (ENSJJAG00000015381) #27 Arhgap1 (ENSJJAG00000022610) #28 Atg13 (ENSJJAG00000024173) #29 ENSJJAG00000015195 ENSJJAG00000016975 Ambra1 (ENSJJAG00000004138) #31 Chrm4 (ENSJJAG00000010466) #32 Mdk (ENSJJAG00000023305) #33 Dgkz (ENSJJAG00000003197) #34 Creb3l1 (ENSJJAG00000014152) #36 Phf21a (ENSJJAG00000016994) Rodentia_A ANCESTRAL SPECIES 1 ENSGT00940000154479.a ENSGT00390000017480 ENSGT00940000158775 #9 ENSGT00390000014065 #10 ENSGT00940000158970 #11 ENSGT00390000016785 #12 ENSGT01020000230346.E #13 ENSGT00940000157349 #14 ENSGT00940000159754 #15 ENSGT00940000157698.b #16 ENSGT00940000156718 #17 ENSGT00940000159068 #18 ENSGT00940000158446 #19 ENSGT00510000047881 #20 ENSGT00950000182973.b.a #21 ENSGT00940000155568 #22 ENSGT00390000012935 #23 ENSGT00940000158287 #24 ENSGT00390000014757 #25 ENSGT00940000154234.b #26 ENSGT00930000151062 #27 ENSGT00940000160630 #28 ENSGT00390000007055 #29 ENSGT00940000154348.c.b.a ENSGT00390000016223 #31 ENSGT00940000160394.a #32 ENSGT00390000007640.b #33 ENSGT00940000156152 #34 ENSGT00860000136066 #35 ENSGT00940000159848 #36 ENSGT00940000156124 Sciuridae ANCESTRAL SPECIES 2 ENSGT00940000154479.a ENSGT00390000017480 ENSGT00940000158775 #9 ENSGT00390000014065 #10 ENSGT00940000158970 #11 ENSGT00390000016785 #12 ENSGT01020000230346.E #13 ENSGT00940000157349 #14 ENSGT00940000159754 #15 ENSGT00940000157698.b #16 ENSGT00940000156718 #17 ENSGT00940000159068 #18 ENSGT00940000158446 #19 ENSGT00510000047881 #20 ENSGT00950000182973.b.a #21 ENSGT00940000155568 #22 ENSGT00390000012935 #23 ENSGT00940000158287 #24 ENSGT00390000014757 #25 ENSGT00940000154234.b #26 ENSGT00930000151062 #27 ENSGT00940000160630 #28 ENSGT00390000007055 #29 ENSGT00940000154348.c.b.a ENSGT00390000016223 #31 ENSGT00940000160394.a #32 ENSGT00390000007640.b #33 ENSGT00940000156152 #34 ENSGT00940000159848 #36 ENSGT00940000156124 ENSGT00940000158758 Eurasian red squirrel MODERN SPECIES 2 PTPMT1 (ENSSVLG00005009417) #10 CELF1 (ENSSVLG00005009492) #11 RAPSN (ENSSVLG00005009920) #12 ENSSVLG00005009993 #13 ENSSVLG00005010167 #14 ENSSVLG00005010225 #13 ENSSVLG00005010302 #14 SPI1 (ENSSVLG00005010597) #15 MYBPC3 (ENSSVLG00005010729) #16 MADD (ENSSVLG00005011762) #17 ENSSVLG00005012055 NR1H3 (ENSSVLG00005012159) #18 ACP2 (ENSSVLG00005012397) #19 DDB2 (ENSSVLG00005012634) #20 PACSIN3 (ENSSVLG00005013010) #21 ARFGAP2 (ENSSVLG00005013354) #22 CSTPP1 (ENSSVLG00005013495) #23 LRP4 (ENSSVLG00005013702) #24 CKAP5 (ENSSVLG00005013939) #25 F2 (ENSSVLG00005014116) #26 ARHGAP1 (ENSSVLG00005014685) #28 ENSSVLG00005014869 #29 HARBI1 (ENSSVLG00005015510) AMBRA1 (ENSSVLG00005015569) #31 CHRM4 (ENSSVLG00005015740) #32 MDK (ENSSVLG00005015782) #33 DGKZ (ENSSVLG00005015887) #34 ENSSVLG00005015926 CREB3L1 (ENSSVLG00005015955) #36 PHF21A (ENSSVLG00005016012) LARGE2 (ENSSVLG00005016132) Marmotini ANCESTRAL SPECIES 22 ENSGT00940000154479.a ENSGT00390000017480 ENSGT00940000158775 #9 ENSGT00390000014065 #10 ENSGT00940000158970 #11 ENSGT00390000016785 #12 ENSGT01020000230346.E #13 ENSGT00940000157349 #14 ENSGT00940000159754 #15 ENSGT00940000157698.b #16 ENSGT00940000156718 #17 ENSGT00940000159068 #18 ENSGT00940000158446 #19 ENSGT00510000047881 #20 ENSGT00950000182973.b.a #21 ENSGT00940000155568 #22 ENSGT00390000012935 #23 ENSGT00940000158287 #24 ENSGT00390000014757 #25 ENSGT00940000154234.b #26 ENSGT00930000151062 #27 ENSGT00940000160630 #28 ENSGT00390000007055 #29 ENSGT00940000154348.c.b.a ENSGT00390000016223 #31 ENSGT00940000160394.a #32 ENSGT00390000007640.b #33 ENSGT00940000156152 #34 ENSGT00940000159848 #36 ENSGT00940000156124 ENSGT00940000158758 Alpin marmot MODERN SPECIES 3 FAM180B (ENSMMMG00000015675) NDUFS3 (ENSMMMG00000015667) KBTBD4 (ENSMMMG00000015654) #9 ENSMMMG00000015652 CELF1 (ENSMMMG00000015346) #11 RAPSN (ENSMMMG00000015294) #12 PSMC3 (ENSMMMG00000015270) #13 SLC39A13 (ENSMMMG00000015224) #14 SPI1 (ENSMMMG00000015212) #15 MYBPC3 (ENSMMMG00000015189) #16 MADD (ENSMMMG00000014606) #17 NR1H3 (ENSMMMG00000014541) #18 ACP2 (ENSMMMG00000014527) #19 DDB2 (ENSMMMG00000014518) #20 PACSIN3 (ENSMMMG00000014498) #21 ARFGAP2 (ENSMMMG00000014424) #22 CSTPP1 (ENSMMMG00000014382) #23 LRP4 (ENSMMMG00000014335) #24 CKAP5 (ENSMMMG00000013993) #25 F2 (ENSMMMG00000013961) #26 ZNF408 (ENSMMMG00000013944) #27 ARHGAP1 (ENSMMMG00000013934) #28 ATG13 (ENSMMMG00000013875) #29 HARBI1 (ENSMMMG00000013860) AMBRA1 (ENSMMMG00000013284) #31 CHRM4 (ENSMMMG00000013278) #32 MDK (ENSMMMG00000013259) #33 DGKZ (ENSMMMG00000013155) #34 CREB3L1 (ENSMMMG00000013137) #36 PHF21A (ENSMMMG00000012404) LARGE2 (ENSMMMG00000012317) Marmotini_b ANCESTRAL SPECIES 23 ENSGT00940000154479.a ENSGT00390000017480 ENSGT00940000158775 #9 ENSGT00390000014065 #10 ENSGT00940000158970 #11 ENSGT00390000016785 #12 ENSGT01020000230346.E #13 ENSGT00940000157349 #14 ENSGT00940000159754 #15 ENSGT00940000157698.b #16 ENSGT00940000156718 #17 ENSGT00940000159068 #18 ENSGT00940000158446 #19 ENSGT00510000047881 #20 ENSGT00950000182973.b.a #21 ENSGT00940000155568 #22 ENSGT00390000012935 #23 ENSGT00940000158287 #24 ENSGT00390000014757 #25 ENSGT00940000154234.b #26 ENSGT00930000151062 #27 ENSGT00940000160630 #28 ENSGT00390000007055 #29 ENSGT00940000154348.c.b.a ENSGT00390000016223 #31 ENSGT00940000160394.a #32 ENSGT00390000007640.b #33 ENSGT00940000156152 #34 ENSGT00940000159848 #36 ENSGT00940000156124 ENSGT00940000158758 Squirrel MODERN SPECIES 162 FAM180B (ENSSTOG00000000628) NDUFS3 (ENSSTOG00000000622) KBTBD4 (ENSSTOG00000020864) #9 PTPMT1 (ENSSTOG00000019770) #10 CELF1 (ENSSTOG00000000613) #11 RAPSN (ENSSTOG00000011047) #12 PSMC3 (ENSSTOG00000011038) #13 SLC39A13 (ENSSTOG00000027722) #14 SPI1 (ENSSTOG00000022735) #15 MYBPC3 (ENSSTOG00000026473) #16 MADD (ENSSTOG00000007626) #17 NR1H3 (ENSSTOG00000007611) #18 ACP2 (ENSSTOG00000007586) #19 DDB2 (ENSSTOG00000007571) #20 PACSIN3 (ENSSTOG00000007547) #21 ARFGAP2 (ENSSTOG00000007524) #22 CSTPP1 (ENSSTOG00000007512) #23 LRP4 (ENSSTOG00000005236) #24 CKAP5 (ENSSTOG00000005158) #25 F2 (ENSSTOG00000005130) #26 ZNF408 (ENSSTOG00000005114) #27 ARHGAP1 (ENSSTOG00000026557) #28 ATG13 (ENSSTOG00000005077) #29 HARBI1 (ENSSTOG00000005072) AMBRA1 (ENSSTOG00000019411) #31 CHRM4 (ENSSTOG00000022455) #32 MDK (ENSSTOG00000027636) #33 DGKZ (ENSSTOG00000012704) #34 CREB3L1 (ENSSTOG00000012697) #36 PHF21A (ENSSTOG00000011552) LARGE2 (ENSSTOG00000011545) Arctic ground squirrel DUPLICATION Arctic ground squirrel MODERN SPECIES 45 RAB3IP (ENSUPAG00010023415) MYRFL (ENSUPAG00010023416) CNOT2 (ENSUPAG00010023418) KCNMB4 (ENSUPAG00010023419) PTPRB (ENSUPAG00010023420) ENSUPAG00010023422 PTPRR (ENSUPAG00010023424) TSPAN8 (ENSUPAG00010023425) LGR5 (ENSUPAG00010023426) ZFC3H1 (ENSUPAG00010023427) THAP2 (ENSUPAG00010023428) TMEM19 (ENSUPAG00010023429) RAB21 (ENSUPAG00010023430) TBC1D15 (ENSUPAG00010023431) TPH2 (ENSUPAG00010023432) ENSUPAG00010023433 #22 TRHDE (ENSUPAG00010023434) ENSUPAG00010023435 ENSUPAG00010023436 Arctic ground squirrel MODERN SPECIES 208 NDUFS3 (ENSUPAG00010014067) KBTBD4 (ENSUPAG00010014056) #9 ENSUPAG00010014045 CELF1 (ENSUPAG00010013973) #11 RAPSN (ENSUPAG00010013926) #12 PSMC3 (ENSUPAG00010013908) #13 SLC39A13 (ENSUPAG00010013855) #14 SPI1 (ENSUPAG00010013850) #15 ENSUPAG00010013841 MYBPC3 (ENSUPAG00010013812) #16 MADD (ENSUPAG00010011229) #17 NR1H3 (ENSUPAG00010011188) #18 ACP2 (ENSUPAG00010011162) #19 DDB2 (ENSUPAG00010011149) #20 PACSIN3 (ENSUPAG00010011141) #21 ARFGAP2 (ENSUPAG00010011117) #22 CSTPP1 (ENSUPAG00010011093) #23 LRP4 (ENSUPAG00010011049) #24 CKAP5 (ENSUPAG00010010730) #25 F2 (ENSUPAG00010010714) #26 ZNF408 (ENSUPAG00010010704) #27 ARHGAP1 (ENSUPAG00010010696) #28 ATG13 (ENSUPAG00010010621) #29 HARBI1 (ENSUPAG00010010611) AMBRA1 (ENSUPAG00010010430) #31 CHRM4 (ENSUPAG00010010417) #32 MDK (ENSUPAG00010010379) #33 DGKZ (ENSUPAG00010010211) #34 CREB3L1 (ENSUPAG00010010194) #36 PHF21A (ENSUPAG00010009105) LARGE2 (ENSUPAG00010008955) Hystricomorpha ANCESTRAL SPECIES 16 ENSGT00940000161832.a #8 ENSGT00390000017480 ENSGT00940000158775 #9 ENSGT00390000014065 #10 ENSGT00940000158970 #11 ENSGT00390000016785 #12 ENSGT01020000230346.E #13 ENSGT00940000157349 #14 ENSGT00940000159754 #15 ENSGT00940000157698.b #16 ENSGT00940000156718 #17 ENSGT00940000159068 #18 ENSGT00940000158446 #19 ENSGT00510000047881 #20 ENSGT00950000182973.b.a #21 ENSGT00940000155568 #22 ENSGT00390000012935 #23 ENSGT00940000158287 #24 ENSGT00390000014757 #25 ENSGT00940000154234.b #26 ENSGT00940000160630 #28 ENSGT00390000007055 #29 ENSGT00940000154348.c.b.a ENSGT00390000016223 #31 ENSGT00940000160394.a #32 ENSGT00390000007640.b #33 ENSGT00940000156152 #34 ENSGT00860000136066 #35 ENSGT00940000159848 #36 ENSGT00940000156124 ENSGT00940000158758 Naked mole-rat female MODERN SPECIES 14 ENSHGLG00000043784 MTCH2 (ENSHGLG00000017536) #7 FAM180B (ENSHGLG00000038229) NDUFS3 (ENSHGLG00000018368) KBTBD4 (ENSHGLG00000047234) #9 ENSHGLG00000037048 ENSHGLG00000006909 #11 RAPSN (ENSHGLG00000008521) #12 PSMC3 (ENSHGLG00000005713) #13 SLC39A13 (ENSHGLG00000041087) #14 ENSHGLG00000011456 #15 ENSHGLG00000044290 #16 NR1H3 (ENSHGLG00000014541) #18 ENSHGLG00000036516 #19 DDB2 (ENSHGLG00000018689) #20 ENSHGLG00000040462 #22 CSTPP1 (ENSHGLG00000018725) #23 ARHGAP1 (ENSHGLG00000017685) #28 ENSHGLG00000013428 #29 ENSHGLG00000018447 AMBRA1 (ENSHGLG00000017564) #31 ENSHGLG00000034290 ENSHGLG00000042531 ENSHGLG00000032476 #34 CREB3L1 (ENSHGLG00000048284) #36 ENSHGLG00000033741 ENSHGLG00000037709 ENSHGLG00000050302 ENSHGLG00000032419 PEX16 (ENSHGLG00000019544) CRY2 (ENSHGLG00000013242) Hystricomorpha_a ANCESTRAL SPECIES 12 ENSGT00940000161832.a #8 ENSGT00390000017480 ENSGT00940000158775 #9 ENSGT00390000014065 #10 ENSGT00940000158970 #11 ENSGT00390000016785 #12 ENSGT01020000230346.E #13 ENSGT00940000157349 #14 ENSGT00940000159754 #15 ENSGT00940000157698.b #16 ENSGT00940000156718 #17 ENSGT00940000159068 #18 ENSGT00940000158446 #19 ENSGT00510000047881 #20 ENSGT00950000182973.b.a #21 ENSGT00940000155568 #22 ENSGT00390000012935 #23 ENSGT00940000158287 #24 ENSGT00390000014757 #25 ENSGT00940000154234.b #26 ENSGT00940000160630 #28 ENSGT00390000007055 #29 ENSGT00940000154348.c.b.a ENSGT00390000016223 #31 ENSGT00940000160394.a #32 ENSGT00390000007640.b #33 ENSGT00940000156152 #34 ENSGT00860000136066 #35 ENSGT00940000159848 #36 ENSGT00940000156124 ENSGT00940000158758 Guinea pig MODERN SPECIES 72 C1QTNF4 (ENSCPOG00000023948) #8 NDUFS3 (ENSCPOG00000006141) KBTBD4 (ENSCPOG00000019448) #9 PTPMT1 (ENSCPOG00000031147) #10 CELF1 (ENSCPOG00000036381) #11 RAPSN (ENSCPOG00000015456) #12 PSMC3 (ENSCPOG00000008176) #13 SLC39A13 (ENSCPOG00000008169) #14 SPI1 (ENSCPOG00000022138) #15 MYBPC3 (ENSCPOG00000013368) #16 MADD (ENSCPOG00000013364) #17 NR1H3 (ENSCPOG00000013362) #18 ACP2 (ENSCPOG00000013359) #19 DDB2 (ENSCPOG00000013358) #20 PACSIN3 (ENSCPOG00000013356) #21 ARFGAP2 (ENSCPOG00000013352) #22 CSTPP1 (ENSCPOG00000020334) #23 LRP4 (ENSCPOG00000007072) #24 CKAP5 (ENSCPOG00000007054) #25 F2 (ENSCPOG00000026682) #26 ARHGAP1 (ENSCPOG00000013046) #28 ATG13 (ENSCPOG00000013042) #29 HARBI1 (ENSCPOG00000037304) AMBRA1 (ENSCPOG00000007341) #31 CHRM4 (ENSCPOG00000020788) #32 MDK (ENSCPOG00000007340) #33 DGKZ (ENSCPOG00000009636) #34 CREB3L1 (ENSCPOG00000010073) #36 PHF21A (ENSCPOG00000001299) LARGE2 (ENSCPOG00000033339) PEX16 (ENSCPOG00000027497) Hystricomorpha_b ANCESTRAL SPECIES 10 ENSGT00390000000020.b #7 ENSGT00940000161832.a #8 ENSGT00390000017480 ENSGT00940000158775 #9 ENSGT00940000158970 #11 ENSGT00390000016785 #12 ENSGT01020000230346.E #13 ENSGT00940000157349 #14 ENSGT00940000159754 #15 ENSGT00940000157698.b #16 ENSGT00940000156718 #17 ENSGT00940000159068 #18 ENSGT00940000158446 #19 ENSGT00510000047881 #20 ENSGT00950000182973.b.a #21 ENSGT00940000155568 #22 ENSGT00390000012935 #23 ENSGT00940000158287 #24 ENSGT00390000014757 #25 ENSGT00940000154234.b #26 ENSGT00940000160630 #28 ENSGT00390000007055 #29 ENSGT00940000154348.c.b.a ENSGT00390000016223 #31 ENSGT00940000160394.a #32 ENSGT00390000007640.b #33 ENSGT00940000156152 #34 ENSGT00860000136066 #35 ENSGT00940000159848 #36 ENSGT00940000156124 ENSGT00940000158758 Degu MODERN SPECIES 59 FNBP4 (ENSODEG00000016574) AGBL2 (ENSODEG00000016111) MTCH2 (ENSODEG00000015416) #7 NDUFS3 (ENSODEG00000015948) KBTBD4 (ENSODEG00000015830) #9 CELF1 (ENSODEG00000015204) #11 RAPSN (ENSODEG00000015194) #12 ENSODEG00000016550 #13 SLC39A13 (ENSODEG00000015895) #14 SPI1 (ENSODEG00000015369) #15 MYBPC3 (ENSODEG00000016030) #16 MADD (ENSODEG00000017645) #17 NR1H3 (ENSODEG00000016180) #18 ACP2 (ENSODEG00000015528) #19 ENSODEG00000015965 #21 ENSODEG00000016456 #22 CSTPP1 (ENSODEG00000016656) #23 LRP4 (ENSODEG00000015720) #24 CKAP5 (ENSODEG00000016409) #25 F2 (ENSODEG00000016157) #26 ARHGAP1 (ENSODEG00000016156) #28 ATG13 (ENSODEG00000017294) #29 ENSODEG00000016339 #30 AMBRA1 (ENSODEG00000016633) #31 CHRM4 (ENSODEG00000020352) #32 MDK (ENSODEG00000015931) #33 DGKZ (ENSODEG00000016309) #34 ENSODEG00000016420 #34 ENSODEG00000016039 #35 CREB3L1 (ENSODEG00000016017) #36 ENSODEG00000016348 Long-tailed chinchilla MODERN SPECIES 129 MTCH2 (ENSCLAG00000012026) #7 C1QTNF4 (ENSCLAG00000015186) #8 NDUFS3 (ENSCLAG00000014873) KBTBD4 (ENSCLAG00000016255) #9 CELF1 (ENSCLAG00000011791) #11 RAPSN (ENSCLAG00000015497) #12 PSMC3 (ENSCLAG00000013916) #13 SLC39A13 (ENSCLAG00000014480) #14 SPI1 (ENSCLAG00000017201) #15 MYBPC3 (ENSCLAG00000015418) #16 MADD (ENSCLAG00000012503) #17 NR1H3 (ENSCLAG00000013563) #18 ACP2 (ENSCLAG00000014608) #19 DDB2 (ENSCLAG00000016473) #20 ENSCLAG00000012709 #21 ARFGAP2 (ENSCLAG00000016467) #22 CSTPP1 (ENSCLAG00000014110) #23 LRP4 (ENSCLAG00000016159) #24 CKAP5 (ENSCLAG00000015801) #25 F2 (ENSCLAG00000015618) #26 ARHGAP1 (ENSCLAG00000013542) #28 ATG13 (ENSCLAG00000015328) #29 HARBI1 (ENSCLAG00000013578) AMBRA1 (ENSCLAG00000015156) #31 CHRM4 (ENSCLAG00000013251) #32 MDK (ENSCLAG00000014462) #33 DGKZ (ENSCLAG00000016057) #34 ENSCLAG00000014194 #35 CREB3L1 (ENSCLAG00000013609) #36 PHF21A (ENSCLAG00000016632) LARGE2 (ENSCLAG00000014846) Lagomorpha ANCESTRAL SPECIES 4 ENSGT00940000161832.a #8 ENSGT00940000154479.a ENSGT00390000017480 ENSGT00940000158775 #9 ENSGT00390000014065 #10 ENSGT00940000158970 #11 ENSGT00390000016785 #12 ENSGT01020000230346.E #13 ENSGT00940000157349 #14 ENSGT00940000157698.b #16 ENSGT00940000156718 #17 ENSGT00940000159068 #18 ENSGT00940000158446 #19 ENSGT00510000047881 #20 ENSGT00950000182973.b.a #21 ENSGT00940000155568 #22 ENSGT00390000012935 #23 ENSGT00940000158287 #24 ENSGT00390000014757 #25 ENSGT00940000164059 ENSGT00930000151062 #27 ENSGT00940000160630 #28 ENSGT00390000007055 #29 ENSGT00940000154348.c.b.a ENSGT00390000016223 #31 ENSGT00940000160394.a #32 ENSGT00940000156152 #34 ENSGT00940000159848 #36 ENSGT00940000156124 ENSGT00940000158758 ENSGT00390000017790 Pika MODERN SPECIES 3586 MYBPC3 (ENSOPRG00000009569) #16 MADD (ENSOPRG00000009509) #17 NR1H3 (ENSOPRG00000009497) #18 ACP2 (ENSOPRG00000009485) #19 DDB2 (ENSOPRG00000009468) #20 PACSIN3 (ENSOPRG00000009451) #21 ARFGAP2 (ENSOPRG00000009432) #22 CSTPP1 (ENSOPRG00000009417) #23 LRP4 (ENSOPRG00000009347) #24 CKAP5 (ENSOPRG00000009287) #25 ENSOPRG00000009249 ZNF408 (ENSOPRG00000009225) #27 ARHGAP1 (ENSOPRG00000009201) #28 ATG13 (ENSOPRG00000009172) #29 Rabbit DUPLICATION Rabbit MODERN SPECIES 589 ENSOCUG00000023950 ENSOCUG00000035072 #22 ENSOCUG00000034227 Rabbit DUPLICATION Rabbit DUPLICATION Rabbit DUPLICATION Rabbit MODERN SPECIES 4 RHEB (ENSOCUG00000013173) ENSOCUG00000029750 ENSOCUG00000034117 PRKAG2 (ENSOCUG00000006463) ENSOCUG00000021944 GALNTL5 (ENSOCUG00000011307) GALNT11 (ENSOCUG00000011317) KMT2C (ENSOCUG00000011322) CCT8L2 (ENSOCUG00000000742) ENSOCUG00000000459 DPP6 (ENSOCUG00000012252) ENSOCUG00000029811 PAXIP1 (ENSOCUG00000023370) ENSOCUG00000036173 ENSOCUG00000017862 ENSOCUG00000025648 #22 ENSOCUG00000036066 ENSOCUG00000023248 #22 SUCO (ENSOCUG00000007590) ENSOCUG00000038737 C1orf105 (ENSOCUG00000029014) ENSOCUG00000006005 DNM3 (ENSOCUG00000005995) ENSOCUG00000036384 METTL13 (ENSOCUG00000008257) VAMP4 (ENSOCUG00000015967) MYOC (ENSOCUG00000015957) MYOCOS (ENSOCUG00000030327) PRRC2C (ENSOCUG00000015914) ENSOCUG00000036962 CCDC181 (ENSOCUG00000000852) Rabbit MODERN SPECIES 4 ENSOCUG00000038027 SLC19A2 (ENSOCUG00000025548) CCDC181 (ENSOCUG00000000852) ENSOCUG00000036962 PRRC2C (ENSOCUG00000015914) MYOCOS (ENSOCUG00000030327) MYOC (ENSOCUG00000015957) VAMP4 (ENSOCUG00000015967) METTL13 (ENSOCUG00000008257) ENSOCUG00000036384 DNM3 (ENSOCUG00000005995) ENSOCUG00000006005 C1orf105 (ENSOCUG00000029014) ENSOCUG00000038737 SUCO (ENSOCUG00000007590) ENSOCUG00000023248 #22 ENSOCUG00000036066 ENSOCUG00000025648 #22 ENSOCUG00000017862 ENSOCUG00000036173 PAXIP1 (ENSOCUG00000023370) ENSOCUG00000029811 DPP6 (ENSOCUG00000012252) ENSOCUG00000000459 CCT8L2 (ENSOCUG00000000742) KMT2C (ENSOCUG00000011322) GALNT11 (ENSOCUG00000011317) GALNTL5 (ENSOCUG00000011307) ENSOCUG00000021944 PRKAG2 (ENSOCUG00000006463) ENSOCUG00000034117 Rabbit MODERN SPECIES 610 ENSOCUG00000021595 ENSOCUG00000007142 #22 ENSOCUG00000024614 ENSOCUG00000031858 ENSOCUG00000016127 Rabbit MODERN SPECIES C1QTNF4 (ENSOCUG00000006365) #8 FAM180B (ENSOCUG00000006361) NDUFS3 (ENSOCUG00000006359) KBTBD4 (ENSOCUG00000006353) #9 PTPMT1 (ENSOCUG00000021229) #10 CELF1 (ENSOCUG00000001311) #11 RAPSN (ENSOCUG00000008892) #12 PSMC3 (ENSOCUG00000026980) #13 SLC39A13 (ENSOCUG00000005557) #14 MYBPC3 (ENSOCUG00000002112) #16 MADD (ENSOCUG00000002099) #17 NR1H3 (ENSOCUG00000002095) #18 ACP2 (ENSOCUG00000013342) #19 DDB2 (ENSOCUG00000002076) #20 PACSIN3 (ENSOCUG00000027715) #21 ENSOCUG00000002073 #22 CSTPP1 (ENSOCUG00000002066) #23 LRP4 (ENSOCUG00000002052) #24 CKAP5 (ENSOCUG00000016200) #25 ZNF408 (ENSOCUG00000010953) #27 ARHGAP1 (ENSOCUG00000016160) #28 ATG13 (ENSOCUG00000016144) #29 HARBI1 (ENSOCUG00000016137) AMBRA1 (ENSOCUG00000016117) #31 CHRM4 (ENSOCUG00000021064) #32 ENSOCUG00000024752 #34 CREB3L1 (ENSOCUG00000004418) #36 PHF21A (ENSOCUG00000001675) LARGE2 (ENSOCUG00000001671) PEX16 (ENSOCUG00000001670) ENSOCUG00000023020 Tree shrew MODERN SPECIES 2428 ENSTBEG00000007718 #21 ARFGAP2 (ENSTBEG00000006506) #22 CSTPP1 (ENSTBEG00000005477) #23