Mus	ANCESTRAL SPECIES	1	ENSGT00940000161832.a #7	ENSGT00390000017480 #8	ENSGT00940000158775 #9	ENSGT00390000014065 #10	ENSGT00940000158970 #11	ENSGT00390000016785 #12	ENSGT01020000230346.E #13	ENSGT00940000157349 #14	ENSGT00940000159754 #15	ENSGT00940000157698.b #16	ENSGT00940000156718 #17	ENSGT00940000159068 #18	ENSGT00940000158446 #19	ENSGT00510000047881 #20	ENSGT00950000182973.b.a #21	ENSGT00940000155568 #22	ENSGT00390000012935 #23	ENSGT00960000189374	ENSGT00940000158287 #24	ENSGT00390000014757 #25	ENSGT00940000154234.b #26	ENSGT00930000151062 #27	ENSGT00940000160630 #28	ENSGT00390000007055 #29	ENSGT00940000154348.c.b.a #30	ENSGT00390000016223 #31	ENSGT00940000160394.a #32	ENSGT00390000007640.b #33	ENSGT00940000156152 #34	ENSGT00860000136066	ENSGT00940000159848 #35
Mus_A	ANCESTRAL SPECIES		ENSGT00940000161832.a #7	ENSGT00390000017480 #8	ENSGT00940000158775 #9	ENSGT00390000014065 #10	ENSGT00940000158970 #11	ENSGT00390000016785 #12	ENSGT01020000230346.E #13	ENSGT00940000157349 #14	ENSGT00940000159754 #15	ENSGT00940000157698.b #16	ENSGT00940000156718 #17	ENSGT00940000159068 #18	ENSGT00940000158446 #19	ENSGT00510000047881 #20	ENSGT00950000182973.b.a #21	ENSGT00940000155568 #22	ENSGT00390000012935 #23	ENSGT00960000189374	ENSGT00940000158287 #24	ENSGT00390000014757 #25	ENSGT00940000154234.b #26	ENSGT00930000151062 #27	ENSGT00940000160630 #28	ENSGT00390000007055 #29	ENSGT00940000154348.c.b.a #30	ENSGT00390000016223 #31	ENSGT00940000160394.a #32	ENSGT00390000007640.b.g #33	ENSGT00940000156152 #34	ENSGT00860000136066	ENSGT00940000159848 #35
Mus_B	ANCESTRAL SPECIES	1	ENSGT00940000161832.a #7	ENSGT00390000017480 #8	ENSGT00940000158775 #9	ENSGT00390000014065 #10	ENSGT00940000158970 #11	ENSGT00390000016785 #12	ENSGT01020000230346.E #13	ENSGT00940000157349 #14	ENSGT00940000159754 #15	ENSGT00940000157698.b #16	ENSGT00940000156718 #17	ENSGT00940000159068 #18	ENSGT00940000158446 #19	ENSGT00510000047881 #20	ENSGT00950000182973.b.a #21	ENSGT00940000155568 #22	ENSGT00390000012935 #23	ENSGT00960000189374	ENSGT00940000158287 #24	ENSGT00390000014757 #25	ENSGT00940000154234.b #26	ENSGT00930000151062 #27	ENSGT00940000160630 #28	ENSGT00390000007055 #29	ENSGT00940000154348.c.b.a #30	ENSGT00390000016223 #31	ENSGT00940000160394.a #32	ENSGT00390000007640.b.g #33	ENSGT00940000156152 #34	ENSGT00860000136066	ENSGT00940000159848 #35
Mouse	MODERN SPECIES	11	C1qtnf4 (ENSMUSG00000040794) #7	Ndufs3 (ENSMUSG00000005510) #8	Kbtbd4 (ENSMUSG00000005505) #9	Ptpmt1 (ENSMUSG00000063235) #10	Celf1 (ENSMUSG00000005506) #11	Rapsn (ENSMUSG00000002104) #12	Psmc3 (ENSMUSG00000002102) #13	Slc39a13 (ENSMUSG00000002105) #14	Spi1 (ENSMUSG00000002111) #15	Mybpc3 (ENSMUSG00000002100) #16	Madd (ENSMUSG00000040687) #17	Nr1h3 (ENSMUSG00000002108) #18	Acp2 (ENSMUSG00000002103) #19	Ddb2 (ENSMUSG00000002109) #20	Pacsin3 (ENSMUSG00000027257) #21	Arfgap2 (ENSMUSG00000027255) #22	Cstpp1 (ENSMUSG00000040591) #23	Lrp4 (ENSMUSG00000027253) #24	Ckap5 (ENSMUSG00000040549) #25	F2 (ENSMUSG00000027249) #26	Zfp408 (ENSMUSG00000075040) #27	Arhgap1 (ENSMUSG00000027247) #28	Atg13 (ENSMUSG00000027244) #29	Harbi1 (ENSMUSG00000027243) #30	Ambra1 (ENSMUSG00000040506) #31	Chrm4 (ENSMUSG00000040495) #32	Mdk (ENSMUSG00000027239) #33	Dgkz (ENSMUSG00000040479) #34	Creb3l1 (ENSMUSG00000027230) #35	Phf21a (ENSMUSG00000058318) #36	Large2 (ENSMUSG00000040434) #37
Mus_C	ANCESTRAL SPECIES		ENSGT00940000161832.a #7	ENSGT00390000017480 #8	ENSGT00940000158775 #9	ENSGT00390000014065 #10	ENSGT00940000158970 #11	ENSGT00390000016785 #12	ENSGT01020000230346.E #13	ENSGT00940000157349 #14	ENSGT00940000159754 #15	ENSGT00940000157698.b #16	ENSGT00940000156718 #17	ENSGT00940000159068 #18	ENSGT00940000158446 #19	ENSGT00510000047881 #20	ENSGT00950000182973.b.a #21	ENSGT00940000155568 #22	ENSGT00390000012935 #23	ENSGT00960000189374	ENSGT00940000158287 #24	ENSGT00390000014757 #25	ENSGT00940000154234.b #26	ENSGT00930000151062 #27	ENSGT00940000160630 #28	ENSGT00390000007055 #29	ENSGT00940000154348.c.b.a #30	ENSGT00390000016223 #31	ENSGT00940000160394.a #32	ENSGT00390000007640.b.g #33	ENSGT00940000156152 #34	ENSGT00860000136066	ENSGT00940000159848 #35
spretus	MODERN SPECIES	11	Mtch2 (MGP_SPRETEiJ_G0024855)	C1qtnf4 (MGP_SPRETEiJ_G0024856) #7	Ndufs3 (MGP_SPRETEiJ_G0024857) #8	Kbtbd4 (MGP_SPRETEiJ_G0024858) #9	Celf1 (MGP_SPRETEiJ_G0024859) #11	Rapsn (MGP_SPRETEiJ_G0024860) #12	Psmc3 (MGP_SPRETEiJ_G0024861) #13	Slc39a13 (MGP_SPRETEiJ_G0024862) #14	Spi1 (MGP_SPRETEiJ_G0024863) #15	Mybpc3 (MGP_SPRETEiJ_G0024864) #16	Madd (MGP_SPRETEiJ_G0024865) #17	Nr1h3 (MGP_SPRETEiJ_G0024866) #18	Acp2 (MGP_SPRETEiJ_G0024867) #19	Ddb2 (MGP_SPRETEiJ_G0024868) #20	Pacsin3 (MGP_SPRETEiJ_G0024869) #21	Arfgap2 (MGP_SPRETEiJ_G0024870) #22	Cstpp1 (MGP_SPRETEiJ_G0024871) #23	Lrp4 (MGP_SPRETEiJ_G0024872) #24	Ckap5 (MGP_SPRETEiJ_G0024873) #25	F2 (MGP_SPRETEiJ_G0024874) #26	Zfp408 (MGP_SPRETEiJ_G0024875) #27	Arhgap1 (MGP_SPRETEiJ_G0024876) #28	Atg13 (MGP_SPRETEiJ_G0024877) #29	Harbi1 (MGP_SPRETEiJ_G0024878) #30	Ambra1 (MGP_SPRETEiJ_G0024879) #31	Chrm4 (MGP_SPRETEiJ_G0024880) #32	Mdk (MGP_SPRETEiJ_G0024881) #33	Dgkz (MGP_SPRETEiJ_G0024882) #34	MGP_SPRETEiJ_G0024883	Creb3l1 (MGP_SPRETEiJ_G0024884) #35	Phf21a (MGP_SPRETEiJ_G0024885) #36
Steppe mouse	MODERN SPECIES	36	Ndufs3 (ENSMSIG00000027630) #8	Kbtbd4 (ENSMSIG00000027623) #9	ENSMSIG00000027615 #10	Celf1 (ENSMSIG00000027572) #11	ENSMSIG00000027554	Rapsn (ENSMSIG00000027530) #12	Psmc3 (ENSMSIG00000027459) #13	Slc39a13 (ENSMSIG00000027429) #14	Spi1 (ENSMSIG00000027421) #15	Mybpc3 (ENSMSIG00000027308) #16	Madd (ENSMSIG00000021063) #17	Nr1h3 (ENSMSIG00000020950) #18	Acp2 (ENSMSIG00000020936) #19	Ddb2 (ENSMSIG00000020921) #20	Pacsin3 (ENSMSIG00000020892) #21	Arfgap2 (ENSMSIG00000020760) #22	ENSMSIG00000020727 #23	ENSMSIG00000020721	Lrp4 (ENSMSIG00000020667) #24	ENSMSIG00000020658	Ckap5 (ENSMSIG00000020211) #25	F2 (ENSMSIG00000020083) #26	Zfp408 (ENSMSIG00000020068) #27	Arhgap1 (ENSMSIG00000020000) #28	Atg13 (ENSMSIG00000019915) #29	Harbi1 (ENSMSIG00000019911) #30	Ambra1 (ENSMSIG00000019820) #31	Chrm4 (ENSMSIG00000019816) #32	Mdk (ENSMSIG00000019785) #33	ENSMSIG00000019782	Dgkz (ENSMSIG00000019366) #34
Ryukyu mouse	MODERN SPECIES	11	Mtch2 (MGP_CAROLIEiJ_G0023944)	Madd (MGP_CAROLIEiJ_G0023945) #17	C1qtnf4 (MGP_CAROLIEiJ_G0023946) #7	Ndufs3 (MGP_CAROLIEiJ_G0023947) #8	Kbtbd4 (MGP_CAROLIEiJ_G0023948) #9	Celf1 (MGP_CAROLIEiJ_G0023949) #11	Rapsn (MGP_CAROLIEiJ_G0023950) #12	Psmc3 (MGP_CAROLIEiJ_G0023951) #13	Slc39a13 (MGP_CAROLIEiJ_G0023952) #14	Spi1 (MGP_CAROLIEiJ_G0023953) #15	Mybpc3 (MGP_CAROLIEiJ_G0023954) #16	Nr1h3 (MGP_CAROLIEiJ_G0023955) #18	Acp2 (MGP_CAROLIEiJ_G0023956) #19	Ddb2 (MGP_CAROLIEiJ_G0023957) #20	Pacsin3 (MGP_CAROLIEiJ_G0023958) #21	Arfgap2 (MGP_CAROLIEiJ_G0023959) #22	Cstpp1 (MGP_CAROLIEiJ_G0023960) #23	MGP_CAROLIEiJ_G0023961	Lrp4 (MGP_CAROLIEiJ_G0023962) #24	Ckap5 (MGP_CAROLIEiJ_G0023963) #25	F2 (MGP_CAROLIEiJ_G0023964) #26	Zfp408 (MGP_CAROLIEiJ_G0023965) #27	Arhgap1 (MGP_CAROLIEiJ_G0023966) #28	Atg13 (MGP_CAROLIEiJ_G0023967) #29	Harbi1 (MGP_CAROLIEiJ_G0023968) #30	Ambra1 (MGP_CAROLIEiJ_G0023969) #31	Chrm4 (MGP_CAROLIEiJ_G0023970) #32	Mdk (MGP_CAROLIEiJ_G0023971) #33	Dgkz (MGP_CAROLIEiJ_G0023972) #34	MGP_CAROLIEiJ_G0023973	Creb3l1 (MGP_CAROLIEiJ_G0023974) #35
Shrew mouse	MODERN SPECIES	16	Mtch2 (MGP_PahariEiJ_G0025381)	C1qtnf4 (MGP_PahariEiJ_G0025382) #7	Ndufs3 (MGP_PahariEiJ_G0025383) #8	Kbtbd4 (MGP_PahariEiJ_G0025384) #9	Celf1 (MGP_PahariEiJ_G0025385) #11	Rapsn (MGP_PahariEiJ_G0025386) #12	Psmc3 (MGP_PahariEiJ_G0025387) #13	Slc39a13 (MGP_PahariEiJ_G0025388) #14	Spi1 (MGP_PahariEiJ_G0025389) #15	Mybpc3 (MGP_PahariEiJ_G0025390) #16	Madd (MGP_PahariEiJ_G0025391) #17	Nr1h3 (MGP_PahariEiJ_G0025392) #18	Acp2 (MGP_PahariEiJ_G0025393) #19	Ddb2 (MGP_PahariEiJ_G0025394) #20	Pacsin3 (MGP_PahariEiJ_G0025395) #21	Arfgap2 (MGP_PahariEiJ_G0025396) #22	Cstpp1 (MGP_PahariEiJ_G0025397) #23	MGP_PahariEiJ_G0025398	Lrp4 (MGP_PahariEiJ_G0025399) #24	Ckap5 (MGP_PahariEiJ_G0025400) #25	F2 (MGP_PahariEiJ_G0025401) #26	Zfp408 (MGP_PahariEiJ_G0025402) #27	Arhgap1 (MGP_PahariEiJ_G0025403) #28	Atg13 (MGP_PahariEiJ_G0025404) #29	Harbi1 (MGP_PahariEiJ_G0025405) #30	Ambra1 (MGP_PahariEiJ_G0025406) #31	Chrm4 (MGP_PahariEiJ_G0025407) #32	Mdk (MGP_PahariEiJ_G0025408) #33	Dgkz (MGP_PahariEiJ_G0025409) #34	MGP_PahariEiJ_G0025410	Creb3l1 (MGP_PahariEiJ_G0025411) #35