Euarchontoglires_A	ANCESTRAL SPECIES	4	ENSGT00940000157961.C #14	ENSGT00860000135964	ENSGT00940000157982.b #15	ENSGT00940000156314 #16	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246 #17	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397 #18	ENSGT00940000157439 #19	ENSGT00390000000603	ENSGT00940000161315	ENSGT00390000013474.b.a #20	ENSGT00940000161498 #21	ENSGT00940000159590 #22	ENSGT00390000011219 #23	ENSGT00940000154534.a #24	ENSGT00390000000713	ENSGT00390000004405.b #25	ENSGT00950000182892.a.b.a.a #26	ENSGT00940000154152.d.b #27	ENSGT00940000160113 #28	ENSGT00390000017856.b	ENSGT00940000159503 #29	ENSGT00940000155029.c.b #30	ENSGT00940000159774 #31	ENSGT00940000162072 #32	ENSGT00940000158354 #33	ENSGT00940000161108 #34	ENSGT00940000161230 #35
Glires	ANCESTRAL SPECIES	3	ENSGT00940000157961.C #14	ENSGT00860000135964	ENSGT00940000157982.b #15	ENSGT00940000156314 #16	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246 #17	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397 #18	ENSGT00940000157439 #19	ENSGT00390000000603	ENSGT00940000161315	ENSGT00390000013474.b.a #20	ENSGT00940000161498 #21	ENSGT00940000159590 #22	ENSGT00390000011219 #23	ENSGT00940000154534.a #24	ENSGT00390000000713	ENSGT00390000004405.b #25	ENSGT00950000182892.a.b.a.a #26	ENSGT00940000154152.d.b.dc #27	ENSGT00940000160113 #28	ENSGT00390000017856.b	ENSGT00940000159503 #29	ENSGT00940000155029.c.b #30	ENSGT00940000159774 #31	ENSGT00940000162072 #32	ENSGT00940000158354 #33	ENSGT00940000161108 #34	ENSGT00940000161230 #35
Rodentia	ANCESTRAL SPECIES	4	ENSGT00940000157961.C #14	ENSGT00860000135964	ENSGT00940000157982.b #15	ENSGT00940000156314 #16	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246 #17	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397 #18	ENSGT00940000157439 #19	ENSGT00390000000603	ENSGT00940000161315	ENSGT00390000013474.b.a #20	ENSGT00940000161498 #21	ENSGT00940000159590 #22	ENSGT00390000011219 #23	ENSGT00940000154534.a #24	ENSGT00390000000713	ENSGT00390000004405.b #25	ENSGT00950000182892.a.b.a.a #26	ENSGT00940000154152.d.b.dc.b #27	ENSGT00940000160113 #28	ENSGT00390000017856.b	ENSGT00940000159503 #29	ENSGT00940000155029.c.b #30	ENSGT00940000159774 #31	ENSGT00940000162072 #32	ENSGT00940000158354 #33	ENSGT00940000161108 #34	ENSGT00940000161230 #35
Rodentia_B	ANCESTRAL SPECIES	1	ENSGT00940000153451.a.a.a	ENSGT00940000157961.C #14	ENSGT00940000157982.b #15	ENSGT00940000156314 #16	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246 #17	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397 #18	ENSGT00940000157439 #19	ENSGT00390000000603	ENSGT00940000161315	ENSGT00390000013474.b.a #20	ENSGT00940000161498 #21	ENSGT00940000159590 #22	ENSGT00390000011219 #23	ENSGT00940000154534.a #24	ENSGT00390000000713	ENSGT00390000004405.b #25	ENSGT00950000182892.a.b.a.a #26	ENSGT00940000154152.d.b.dc.b #27	ENSGT00940000160113 #28	ENSGT00390000017856.b	ENSGT00940000159503 #29	ENSGT00940000155029.c.b #30	ENSGT00940000159774 #31	ENSGT00940000162072 #32	ENSGT00940000158354 #33	ENSGT00940000161108 #34	ENSGT00940000161230 #35
Kangaroo rat	MODERN SPECIES	326	1700001P01Rik (ENSDORG00000013037) #7	Cwc25 (ENSDORG00000003061) #8	Pip4k2b (ENSDORG00000009810) #9	Psmb3 (ENSDORG00000009809) #10	Pcgf2 (ENSDORG00000016581) #11	Cisd3 (ENSDORG00000029439) #12	Mllt6 (ENSDORG00000016578) #13	Srcin1 (ENSDORG00000007714) #14	ENSDORG00000007713 #15	Socs7 (ENSDORG00000028979) #16	Npepps (ENSDORG00000009627) #17	Tbx21 (ENSDORG00000013302) #18	Osbpl7 (ENSDORG00000002354) #19	Scrn2 (ENSDORG00000002361) #20	Sp6 (ENSDORG00000026201) #21	Sp2 (ENSDORG00000014109) #22	Pnpo (ENSDORG00000014110) #23	Prr15l (ENSDORG00000027427) #24	Copz2 (ENSDORG00000013441) #25	Nfe2l1 (ENSDORG00000000715) #26	Cbx1 (ENSDORG00000026399) #27	Snx11 (ENSDORG00000029078) #28	Hoxb1 (ENSDORG00000007896) #29	Hoxb2 (ENSDORG00000007897) #30	Hoxb3 (ENSDORG00000007898) #31	Hoxb4 (ENSDORG00000007899) #32	Hoxb5 (ENSDORG00000007900) #33	Hoxb6 (ENSDORG00000023877) #34	Hoxb7 (ENSDORG00000007905) #35	Hoxb8 (ENSDORG00000007906) #36	Hoxb9 (ENSDORG00000027423) #37
Myomorpha	ANCESTRAL SPECIES		ENSGT00940000153451.a.a.a	ENSGT00940000157961.C #14	ENSGT00940000157982.b #15	ENSGT00940000156314 #16	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246 #17	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397 #18	ENSGT00940000157439 #19	ENSGT00390000000603	ENSGT00940000161315	ENSGT00390000013474.b.a #20	ENSGT00940000161498 #21	ENSGT00940000159590 #22	ENSGT00390000011219 #23	ENSGT00940000154534.a #24	ENSGT00390000000713	ENSGT00390000004405.b #25	ENSGT00950000182892.a.b.a.a #26	ENSGT00940000154152.d.b.dc.b #27	ENSGT00940000160113 #28	ENSGT00390000017856.b	ENSGT00940000159503 #29	ENSGT00940000155029.c.b #30	ENSGT00940000159774 #31	ENSGT00940000162072 #32	ENSGT00940000158354 #33	ENSGT00940000161108 #34	ENSGT00940000161230 #35
Muroidea	ANCESTRAL SPECIES		ENSGT00940000153451.a.a.a	ENSGT00940000157961.C #14	ENSGT00940000157982.b #15	ENSGT00940000156314 #16	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246 #17	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397 #18	ENSGT00940000157439 #19	ENSGT00390000000603	ENSGT00940000161315	ENSGT00390000013474.b.a #20	ENSGT00940000161498 #21	ENSGT00940000159590 #22	ENSGT00390000011219 #23	ENSGT00940000154534.a #24	ENSGT00390000000713	ENSGT00390000004405.b #25	ENSGT00950000182892.a.b.a.a #26	ENSGT00940000154152.d.b.dc.b #27	ENSGT00940000160113 #28	ENSGT00390000017856.b	ENSGT00940000159503 #29	ENSGT00940000155029.c.b #30	ENSGT00940000159774 #31	ENSGT00940000162072 #32	ENSGT00940000158354 #33	ENSGT00940000161108 #34	ENSGT00940000161230 #35
Muroidea_A	ANCESTRAL SPECIES	1	ENSGT00940000153451.a.a.a	ENSGT00940000157961.C #14	ENSGT00940000157982.b #15	ENSGT00940000156314 #16	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246 #17	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397 #18	ENSGT00940000157439 #19	ENSGT00390000000603	ENSGT00940000161315	ENSGT00390000013474.b.a #20	ENSGT00940000161498 #21	ENSGT00940000159590 #22	ENSGT00390000011219 #23	ENSGT00940000154534.a #24	ENSGT00390000000713	ENSGT00390000004405.b #25	ENSGT00950000182892.a.b.a.a #26	ENSGT00940000154152.d.b.dc.b #27	ENSGT00940000160113 #28	ENSGT00390000017856.b	ENSGT00940000159503 #29	ENSGT00940000155029.c.b #30	ENSGT00940000159774 #31	ENSGT00940000162072 #32	ENSGT00940000158354 #33	ENSGT00940000161108 #34	ENSGT00940000161230 #35
Cricetidae	ANCESTRAL SPECIES		ENSGT00940000153451.a.a.a	ENSGT00940000157961.C #14	ENSGT00940000157982.b #15	ENSGT00940000156314 #16	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246 #17	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397 #18	ENSGT00940000157439 #19	ENSGT00390000000603	ENSGT00940000161315	ENSGT00390000013474.b.a #20	ENSGT00940000161498 #21	ENSGT00940000159590 #22	ENSGT00390000011219 #23	ENSGT00940000154534.a #24	ENSGT00390000000713	ENSGT00390000004405.b #25	ENSGT00950000182892.a.b.a.a #26	ENSGT00940000154152.d.b.dc.b #27	ENSGT00940000154152.d.a.a ##27	ENSGT00940000160113 #28	ENSGT00390000017856.b	ENSGT00940000159503 #29	ENSGT00940000155029.c.b #30	ENSGT00940000159774 #31	ENSGT00940000162072 #32	ENSGT00940000158354 #33	ENSGT00940000161108 #34
Cricetinae	ANCESTRAL SPECIES		ENSGT00940000153451.a.a.a	ENSGT00940000157961.C #14	ENSGT00940000157982.b #15	ENSGT00940000156314 #16	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246 #17	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397 #18	ENSGT00940000157439 #19	ENSGT00390000000603	ENSGT00940000161315	ENSGT00390000013474.b.a #20	ENSGT00940000161498 #21	ENSGT00940000159590 #22	ENSGT00390000011219 #23	ENSGT00940000154534.a #24	ENSGT00390000000713	ENSGT00390000004405.b #25	ENSGT00950000182892.a.b.a.a #26	ENSGT00940000154152.d.b.dc.a.b ##27	ENSGT00940000160113 #28	ENSGT00390000017856.b	ENSGT00940000159503 #29	ENSGT00940000155029.c.b #30	ENSGT00940000159774 #31	ENSGT00940000162072 #32	ENSGT00940000158354 #33	ENSGT00940000161108 #34	ENSGT00940000161230 #35
Golden Hamster	MODERN SPECIES	674	Epop (ENSMAUG00000015662)	Srcin1 (ENSMAUG00000021175) #14	Arhgap23 (ENSMAUG00000018856) #15	Socs7 (ENSMAUG00000015461) #16	ENSMAUG00000015632	Mrpl45 (ENSMAUG00000021636)	Npepps (ENSMAUG00000017383) #17	Kpnb1 (ENSMAUG00000006211)	Tbkbp1 (ENSMAUG00000018604)	Tbx21 (ENSMAUG00000017507) #18	Osbpl7 (ENSMAUG00000013876) #19	Mrpl10 (ENSMAUG00000000820)	Lrrc46 (ENSMAUG00000019416)	Scrn2 (ENSMAUG00000010014) #20	Sp6 (ENSMAUG00000009667) #21	Sp2 (ENSMAUG00000019269) #22	Pnpo (ENSMAUG00000021706) #23	Cdk5rap3 (ENSMAUG00000007991)	Copz2 (ENSMAUG00000010560) #25	Nfe2l1 (ENSMAUG00000020456) #26	ENSMAUG00000003463 ##27	Snx11 (ENSMAUG00000021528) #28	Skap1 (ENSMAUG00000022191)	Hoxb1 (ENSMAUG00000013237) #29	Hoxb2 (ENSMAUG00000021979) #30	Hoxb3 (ENSMAUG00000011251) #31	Hoxb4 (ENSMAUG00000009367) #32	Hoxb5 (ENSMAUG00000021419) #33	Hoxb6 (ENSMAUG00000021423) #34	Hoxb7 (ENSMAUG00000021297) #35	Hoxb8 (ENSMAUG00000012636) #36
Chinese hamster chok1gshd	MODERN SPECIES	33	ENSCGRG00001002748	Srcin1 (ENSCGRG00001017021) #14	Arhgap23 (ENSCGRG00001018199) #15	Socs7 (ENSCGRG00001021949) #16	Gpr179 (ENSCGRG00001014708)	Mrpl45 (ENSCGRG00001000066)	Npepps (ENSCGRG00001005930) #17	Kpnb1 (ENSCGRG00001016042)	Tbkbp1 (ENSCGRG00001018526)	Tbx21 (ENSCGRG00001008276) #18	Osbpl7 (ENSCGRG00001013737) #19	Mrpl10 (ENSCGRG00001024199)	Lrrc46 (ENSCGRG00001019758)	Scrn2 (ENSCGRG00001022143) #20	Sp6 (ENSCGRG00001002797) #21	Sp2 (ENSCGRG00001010976) #22	Pnpo (ENSCGRG00001018189) #23	Prr15l (ENSCGRG00001008926) #24	Cdk5rap3 (ENSCGRG00001006966)	Copz2 (ENSCGRG00001014767) #25	Nfe2l1 (ENSCGRG00001015287) #26	Cbx1 (ENSCGRG00001014799) ##27	Snx11 (ENSCGRG00001022221) #28	ENSCGRG00001020759	ENSCGRG00001023355	Hoxb1 (ENSCGRG00001024619) #29	Hoxb2 (ENSCGRG00001017587) #30	Hoxb3 (ENSCGRG00001016667) #31	Hoxb4 (ENSCGRG00001022431) #32	Hoxb5 (ENSCGRG00001016167) #33	Hoxb6 (ENSCGRG00001015674) #34
Cricetidae_B	ANCESTRAL SPECIES		ENSGT00940000153451.a.a.a	ENSGT00940000157961.C #14	ENSGT00940000157982.b #15	ENSGT00940000156314 #16	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246 #17	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397 #18	ENSGT00940000157439 #19	ENSGT00390000000603	ENSGT00940000161315	ENSGT00390000013474.b.a #20	ENSGT00940000161498 #21	ENSGT00940000159590 #22	ENSGT00390000011219 #23	ENSGT00940000154534.a #24	ENSGT00390000000713	ENSGT00390000004405.b #25	ENSGT00950000182892.a.b.a.a #26	ENSGT00940000154152.d.b.dc.b #27	ENSGT00940000160113 #28	ENSGT00390000017856.b	ENSGT00940000159503 #29	ENSGT00940000155029.c.b #30	ENSGT00940000159774 #31	ENSGT00940000162072 #32	ENSGT00940000158354 #33	ENSGT00940000161108 #34	ENSGT00940000161230 #35
Prairie vole	MODERN SPECIES	114	Epop (ENSMOCG00000020613)	Srcin1 (ENSMOCG00000017212) #14	Arhgap23 (ENSMOCG00000005846) #15	Socs7 (ENSMOCG00000015144) #16	ENSMOCG00000022822	Mrpl45 (ENSMOCG00000002139)	Npepps (ENSMOCG00000011600) #17	Kpnb1 (ENSMOCG00000003683)	Tbkbp1 (ENSMOCG00000017020)	Tbx21 (ENSMOCG00000004097) #18	Osbpl7 (ENSMOCG00000021054) #19	Mrpl10 (ENSMOCG00000019451)	Lrrc46 (ENSMOCG00000016707)	Scrn2 (ENSMOCG00000019511) #20	Sp6 (ENSMOCG00000007065) #21	Sp2 (ENSMOCG00000020935) #22	Pnpo (ENSMOCG00000011655) #23	Prr15l (ENSMOCG00000006695) #24	Cdk5rap3 (ENSMOCG00000019534)	Copz2 (ENSMOCG00000022427) #25	Nfe2l1 (ENSMOCG00000016002) #26	Cbx1 (ENSMOCG00000001520) #27	Snx11 (ENSMOCG00000019303) #28	Skap1 (ENSMOCG00000018431)	Hoxb1 (ENSMOCG00000002452) #29	Hoxb2 (ENSMOCG00000014846) #30	Hoxb3 (ENSMOCG00000020739) #31	Hoxb4 (ENSMOCG00000022964) #32	Hoxb5 (ENSMOCG00000014523) #33	Hoxb6 (ENSMOCG00000020355) #34	Hoxb7 (ENSMOCG00000020820) #35
Northern American deer mouse	MODERN SPECIES	21	Epop (ENSPEMG00000026437)	Srcin1 (ENSPEMG00000014663) #14	Arhgap23 (ENSPEMG00000004296) #15	Socs7 (ENSPEMG00000000521) #16	ENSPEMG00000027307	Mrpl45 (ENSPEMG00000005654)	Npepps (ENSPEMG00000012220) #17	Kpnb1 (ENSPEMG00000017783)	Tbkbp1 (ENSPEMG00000027762)	Tbx21 (ENSPEMG00000010056) #18	Osbpl7 (ENSPEMG00000001423) #19	Mrpl10 (ENSPEMG00000014613)	Lrrc46 (ENSPEMG00000020507)	Scrn2 (ENSPEMG00000020381) #20	Sp6 (ENSPEMG00000001231) #21	Sp2 (ENSPEMG00000017112) #22	Pnpo (ENSPEMG00000025094) #23	Prr15l (ENSPEMG00000024436) #24	ENSPEMG00000030963	Cdk5rap3 (ENSPEMG00000020712)	Copz2 (ENSPEMG00000011137) #25	Nfe2l1 (ENSPEMG00000010512) #26	Cbx1 (ENSPEMG00000020976) ##27	Snx11 (ENSPEMG00000000381) #28	ENSPEMG00000020286	Skap1 (ENSPEMG00000000585)	Hoxb1 (ENSPEMG00000023977) #29	Hoxb2 (ENSPEMG00000029510) #30	Hoxb3 (ENSPEMG00000028692) #31	Hoxb4 (ENSPEMG00000029805) #32	Hoxb5 (ENSPEMG00000030101) #33
Murinae	ANCESTRAL SPECIES	6	ENSGT00940000153451.a.a.a	ENSGT00940000157961.C #14	ENSGT00940000157982.b #15	ENSGT00940000156314 #16	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246 #17	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397 #18	ENSGT00940000157439 #19	ENSGT00390000000603	ENSGT00940000161315	ENSGT00390000013474.b.a #20	ENSGT00940000161498 #21	ENSGT00940000159590 #22	ENSGT00390000011219 #23	ENSGT00940000154534.a #24	ENSGT00390000000713	ENSGT00390000004405.b #25	ENSGT00950000182892.a.b.a.a #26	ENSGT00940000154152.d.b.dc.b #27	ENSGT00940000160113 #28	ENSGT00390000017856.b	ENSGT00940000159503 #29	ENSGT00940000155029.c.b #30	ENSGT00940000159774 #31	ENSGT00940000162072 #32	ENSGT00940000158354 #33	ENSGT00940000161108 #34	ENSGT00940000161230 #35
Mus	ANCESTRAL SPECIES	2	ENSGT00940000157961.C #14	ENSGT00940000157982.b #15	ENSGT00800000125316	ENSGT00940000156314 #16	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246 #17	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397 #18	ENSGT00940000157439 #19	ENSGT00390000000603	ENSGT00940000161315	ENSGT00390000013474.b.a #20	ENSGT00940000161498 #21	ENSGT00940000159590 #22	ENSGT00390000011219 #23	ENSGT00940000154534.a #24	ENSGT00390000000713	ENSGT00390000004405.b #25	ENSGT00950000182892.a.b.a.a #26	ENSGT00940000153593.c.b.k	ENSGT00940000154152.d.b.dc.b #27	ENSGT00940000160113 #28	ENSGT00390000017856.b	ENSGT00940000159503 #29	ENSGT00940000155029.c.b #30	ENSGT00940000159774 #31	ENSGT00940000162072 #32	ENSGT00940000158354 #33	ENSGT00940000161108 #34
Mus_A	ANCESTRAL SPECIES	2	ENSGT00940000157961.C #14	ENSGT00940000157982.b #15	ENSGT00800000125316	ENSGT00940000156314 #16	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246 #17	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397 #18	ENSGT00940000157439 #19	ENSGT00390000000603	ENSGT00940000161315	ENSGT00390000013474.b.a #20	ENSGT00940000161498 #21	ENSGT00940000159590 #22	ENSGT00390000011219 #23	ENSGT00940000154534.a #24	ENSGT00390000000713	ENSGT00390000004405.b #25	ENSGT00950000182892.a.b.a.a #26	ENSGT00940000153593.c.b.k	ENSGT00940000154152.d.b.dc.b #27	ENSGT00940000160113 #28	ENSGT00390000017856.b	ENSGT00940000159503 #29	ENSGT00940000155029.c.b #30	ENSGT00940000159774 #31	ENSGT00940000162072 #32	ENSGT00940000158354 #33	ENSGT00940000161108 #34
Mus_B	ANCESTRAL SPECIES	2	ENSGT00940000157961.C #14	ENSGT00940000157982.b #15	ENSGT00800000125316	ENSGT00940000156314 #16	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246 #17	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397 #18	ENSGT00940000157439 #19	ENSGT00390000000603	ENSGT00940000161315	ENSGT00390000013474.b.a #20	ENSGT00940000161498 #21	ENSGT00940000159590 #22	ENSGT00390000011219 #23	ENSGT00940000154534.a #24	ENSGT00390000000713	ENSGT00390000004405.b #25	ENSGT00950000182892.a.b.a.a #26	ENSGT00940000153593.c.b.k	ENSGT00940000154152.d.b.dc.b #27	ENSGT00940000160113 #28	ENSGT00390000017856.b	ENSGT00940000159503 #29	ENSGT00940000155029.c.b #30	ENSGT00940000159774 #31	ENSGT00940000162072 #32	ENSGT00940000158354 #33	ENSGT00940000161108 #34
Mouse	MODERN SPECIES	2	Epop (ENSMUSG00000043439)	Srcin1 (ENSMUSG00000038453) #14	Arhgap23 (ENSMUSG00000049807) #15	Socs7 (ENSMUSG00000038485) #16	Gpr179 (ENSMUSG00000070337)	Mrpl45 (ENSMUSG00000018882)	Npepps (ENSMUSG00000001441) #17	Kpnb1 (ENSMUSG00000001440)	Tbkbp1 (ENSMUSG00000038517)	Tbx21 (ENSMUSG00000001444) #18	Osbpl7 (ENSMUSG00000038534) #19	Mrpl10 (ENSMUSG00000001445)	Lrrc46 (ENSMUSG00000020878)	Scrn2 (ENSMUSG00000020877) #20	Sp6 (ENSMUSG00000038560) #21	Sp2 (ENSMUSG00000018678) #22	Pnpo (ENSMUSG00000018659) #23	Prr15l (ENSMUSG00000047040) #24	Cdk5rap3 (ENSMUSG00000018669)	Copz2 (ENSMUSG00000018672) #25	Nfe2l1 (ENSMUSG00000038615) #26	Cbx1 (ENSMUSG00000018666) #27	Snx11 (ENSMUSG00000020876) #28	Skap1 (ENSMUSG00000057058)	Hoxb1 (ENSMUSG00000018973) #29	Hoxb2 (ENSMUSG00000075588) #30	Hoxb3 (ENSMUSG00000048763) #31	Hoxb4 (ENSMUSG00000038692) #32	Hoxb5 (ENSMUSG00000038700) #33	Hoxb6 (ENSMUSG00000000690) #34	Hoxb7 (ENSMUSG00000038721) #35
Mus_C	ANCESTRAL SPECIES	3	ENSGT00940000157961.C #14	ENSGT00940000157982.b #15	ENSGT00800000125316	ENSGT00940000156314 #16	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246 #17	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397 #18	ENSGT00940000157439 #19	ENSGT00390000000603	ENSGT00940000161315	ENSGT00390000013474.b.a #20	ENSGT00940000161498 #21	ENSGT00940000159590 #22	ENSGT00390000011219 #23	ENSGT00940000154534.a #24	ENSGT00390000000713	ENSGT00390000004405.b #25	ENSGT00950000182892.a.b.a.a #26	ENSGT00940000153593.c.b.k	ENSGT00940000154152.d.b.dc.b #27	ENSGT00940000160113 #28	ENSGT00390000017856.b	ENSGT00940000159503 #29	ENSGT00940000155029.c.b #30	ENSGT00940000159774 #31	ENSGT00940000162072 #32	ENSGT00940000158354 #33	ENSGT00940000161108 #34
spretus	MODERN SPECIES	2	Srcin1 (MGP_SPRETEiJ_G0017903) #14	MGP_SPRETEiJ_G0017902	Arhgap23 (MGP_SPRETEiJ_G0017901) #15	Socs7 (MGP_SPRETEiJ_G0017900) #16	Gpr179 (MGP_SPRETEiJ_G0017899)	Mrpl45 (MGP_SPRETEiJ_G0017898)	Npepps (MGP_SPRETEiJ_G0017897) #17	Kpnb1 (MGP_SPRETEiJ_G0017896)	Tbkbp1 (MGP_SPRETEiJ_G0017895)	Tbx21 (MGP_SPRETEiJ_G0017894) #18	Osbpl7 (MGP_SPRETEiJ_G0017893) #19	Mrpl10 (MGP_SPRETEiJ_G0017892)	Lrrc46 (MGP_SPRETEiJ_G0017891)	Scrn2 (MGP_SPRETEiJ_G0017890) #20	Sp6 (MGP_SPRETEiJ_G0017889) #21	Sp2 (MGP_SPRETEiJ_G0017888) #22	Pnpo (MGP_SPRETEiJ_G0017887) #23	Prr15l (MGP_SPRETEiJ_G0017886) #24	Cdk5rap3 (MGP_SPRETEiJ_G0017885)	Copz2 (MGP_SPRETEiJ_G0017884) #25	Nfe2l1 (MGP_SPRETEiJ_G0017883) #26	MGP_SPRETEiJ_G0017882	Cbx1 (MGP_SPRETEiJ_G0017881) #27	Snx11 (MGP_SPRETEiJ_G0017880) #28	MGP_SPRETEiJ_G0017879	Hoxb1 (MGP_SPRETEiJ_G0017878) #29	Hoxb2 (MGP_SPRETEiJ_G0017877) #30	Hoxb3 (MGP_SPRETEiJ_G0017876) #31	Hoxb4 (MGP_SPRETEiJ_G0017875) #32	Hoxb5 (MGP_SPRETEiJ_G0017874) #33	Hoxb6 (MGP_SPRETEiJ_G0017873) #34
Steppe mouse	MODERN SPECIES	3291	Srcin1 (ENSMSIG00000017360) #14	Arhgap23 (ENSMSIG00000017701) #15	ENSMSIG00000017794	Socs7 (ENSMSIG00000017810) #16	Gpr179 (ENSMSIG00000017852)	Mrpl45 (ENSMSIG00000017873)	Npepps (ENSMSIG00000017886) #17	Kpnb1 (ENSMSIG00000017971)	Tbkbp1 (ENSMSIG00000018040)	Tbx21 (ENSMSIG00000018069) #18	Osbpl7 (ENSMSIG00000018093) #19	Mrpl10 (ENSMSIG00000018160)	Lrrc46 (ENSMSIG00000018171)	Scrn2 (ENSMSIG00000018202) #20	Sp6 (ENSMSIG00000018223) #21	Sp2 (ENSMSIG00000018237) #22	ENSMSIG00000018267 #23	ENSMSIG00000018270 #24	Cdk5rap3 (ENSMSIG00000018309)	Copz2 (ENSMSIG00000018337) #25	Nfe2l1 (ENSMSIG00000018374) #26	Cbx1 (ENSMSIG00000018447) #27	ENSMSIG00000018520	Snx11 (ENSMSIG00000018546) #28	Skap1 (ENSMSIG00000018601)	Hoxb1 (ENSMSIG00000018752) #29	Hoxb2 (ENSMSIG00000018769) #30	Hoxb3 (ENSMSIG00000018771) #31	ENSMSIG00000018776	Hoxb4 (ENSMSIG00000018777) #32	Hoxb5 (ENSMSIG00000018787) #33
Ryukyu mouse	MODERN SPECIES	2	Srcin1 (MGP_CAROLIEiJ_G0017057) #14	MGP_CAROLIEiJ_G0017056	Arhgap23 (MGP_CAROLIEiJ_G0017055) #15	Socs7 (MGP_CAROLIEiJ_G0017054) #16	Gpr179 (MGP_CAROLIEiJ_G0017053)	Mrpl45 (MGP_CAROLIEiJ_G0017052)	Npepps (MGP_CAROLIEiJ_G0017051) #17	Kpnb1 (MGP_CAROLIEiJ_G0017050)	Tbkbp1 (MGP_CAROLIEiJ_G0017049)	Tbx21 (MGP_CAROLIEiJ_G0017048) #18	Osbpl7 (MGP_CAROLIEiJ_G0017047) #19	Mrpl10 (MGP_CAROLIEiJ_G0017046)	Lrrc46 (MGP_CAROLIEiJ_G0017045)	MGP_CAROLIEiJ_G0017044 #20	Sp6 (MGP_CAROLIEiJ_G0017043) #21	Sp2 (MGP_CAROLIEiJ_G0017042) #22	Pnpo (MGP_CAROLIEiJ_G0017041) #23	Prr15l (MGP_CAROLIEiJ_G0017040) #24	Cdk5rap3 (MGP_CAROLIEiJ_G0017039)	Copz2 (MGP_CAROLIEiJ_G0017038) #25	Nfe2l1 (MGP_CAROLIEiJ_G0017037) #26	MGP_CAROLIEiJ_G0017036	Cbx1 (MGP_CAROLIEiJ_G0017035) #27	Snx11 (MGP_CAROLIEiJ_G0017034) #28	Skap1 (MGP_CAROLIEiJ_G0017033)	Hoxb1 (MGP_CAROLIEiJ_G0017032) #29	Hoxb2 (MGP_CAROLIEiJ_G0017031) #30	Hoxb3 (MGP_CAROLIEiJ_G0017030) #31	Hoxb4 (MGP_CAROLIEiJ_G0017029) #32	Hoxb5 (MGP_CAROLIEiJ_G0017028) #33	Hoxb6 (MGP_CAROLIEiJ_G0017027) #34
Shrew mouse	MODERN SPECIES	5	Epop (MGP_PahariEiJ_G0018187)	Srcin1 (MGP_PahariEiJ_G0018186) #14	MGP_PahariEiJ_G0018185	Arhgap23 (MGP_PahariEiJ_G0018184) #15	Socs7 (MGP_PahariEiJ_G0018183) #16	Gpr179 (MGP_PahariEiJ_G0018182)	MGP_PahariEiJ_G0018181	Npepps (MGP_PahariEiJ_G0018180) #17	Tbkbp1 (MGP_PahariEiJ_G0018179)	Tbx21 (MGP_PahariEiJ_G0018178) #18	Osbpl7 (MGP_PahariEiJ_G0018177) #19	Mrpl10 (MGP_PahariEiJ_G0018176)	Lrrc46 (MGP_PahariEiJ_G0018175)	Scrn2 (MGP_PahariEiJ_G0018174) #20	Sp6 (MGP_PahariEiJ_G0018173) #21	Sp2 (MGP_PahariEiJ_G0018172) #22	Pnpo (MGP_PahariEiJ_G0018171) #23	Prr15l (MGP_PahariEiJ_G0018170) #24	Cdk5rap3 (MGP_PahariEiJ_G0018169)	Copz2 (MGP_PahariEiJ_G0018168) #25	Nfe2l1 (MGP_PahariEiJ_G0018167) #26	MGP_PahariEiJ_G0018166	Cbx1 (MGP_PahariEiJ_G0018165) #27	Snx11 (MGP_PahariEiJ_G0018164) #28	Skap1 (MGP_PahariEiJ_G0018163)	Hoxb1 (MGP_PahariEiJ_G0018162) #29	Hoxb2 (MGP_PahariEiJ_G0018161) #30	Hoxb3 (MGP_PahariEiJ_G0018160) #31	Hoxb4 (MGP_PahariEiJ_G0018159) #32	Hoxb5 (MGP_PahariEiJ_G0018158) #33	Hoxb6 (MGP_PahariEiJ_G0018157) #34
Rat	MODERN SPECIES	1	Srcin1 (ENSRNOG00000011475) #14	Arhgap23 (ENSRNOG00000022771) #15	Socs7 (ENSRNOG00000059008) #16	Gpr179 (ENSRNOG00000029245)	Mrpl45 (ENSRNOG00000010540)	Npepps (ENSRNOG00000023095) #17	AABR07030425.1 (ENSRNOG00000056057)	Kpnb1 (ENSRNOG00000009275)	Tbkbp1 (ENSRNOG00000009370)	Tbx21 (ENSRNOG00000009427) #18	Osbpl7 (ENSRNOG00000009473) #19	Mrpl10 (ENSRNOG00000009567)	Lrrc46 (ENSRNOG00000009902)	Scrn2 (ENSRNOG00000010214) #20	Sp6 (ENSRNOG00000023551) #21	Sp2 (ENSRNOG00000010492) #22	Pnpo (ENSRNOG00000046493) #23	Prr15l (ENSRNOG00000049162) #24	Cdk5rap3 (ENSRNOG00000048747)	Copz2 (ENSRNOG00000009225) #25	Nfe2l1 (ENSRNOG00000008830) #26	Cbx1 (ENSRNOG00000008689) #27	Snx11 (ENSRNOG00000008642) #28	Skap1 (ENSRNOG00000023881)	Hoxb1 (ENSRNOG00000008506) #29	Hoxb2 (ENSRNOG00000008365) #30	Hoxb3 (ENSRNOG00000008313) #31	Hoxb4 (ENSRNOG00000008191) #32	Hoxb5 (ENSRNOG00000008010) #33	Hoxb6 (ENSRNOG00000007823) #34	Hoxb7 (ENSRNOG00000007611) #35
Upper Galilee mountains blind mole rat	MODERN SPECIES	1028	Hexim1 (ENSNGAG00000004671)	Hexim2 (ENSNGAG00000008154)	Fmnl1 (ENSNGAG00000018866)	Efcab15 (ENSNGAG00000014012)	Map3k14 (ENSNGAG00000018057)	Arhgap27 (ENSNGAG00000021239)	Plekhm1 (ENSNGAG00000013194)	Kpnb1 (ENSNGAG00000017610)	Tbkbp1 (ENSNGAG00000021163)	Tbx21 (ENSNGAG00000002476) #18	Osbpl7 (ENSNGAG00000019382) #19	Mrpl10 (ENSNGAG00000022195)	Lrrc46 (ENSNGAG00000022557)	Scrn2 (ENSNGAG00000023806) #20	Sp6 (ENSNGAG00000015868) #21	Sp2 (ENSNGAG00000017612) #22	Pnpo (ENSNGAG00000020016) #23	Prr15l (ENSNGAG00000021432) #24	ENSNGAG00000022529	ENSNGAG00000000747	Copz2 (ENSNGAG00000023713) #25	Nfe2l1 (ENSNGAG00000000736) #26	Cbx1 (ENSNGAG00000006760) #27	Snx11 (ENSNGAG00000010446) #28	Skap1 (ENSNGAG00000012571)	Hoxb1 (ENSNGAG00000018593) #29	Hoxb2 (ENSNGAG00000019089) #30	Hoxb3 (ENSNGAG00000020227) #31	Hoxb4 (ENSNGAG00000021768) #32	Hoxb5 (ENSNGAG00000023238) #33	Hoxb6 (ENSNGAG00000000973) #34
Lesser Egyptian jerboa	MODERN SPECIES	56	Epop (ENSJJAG00000023234)	Srcin1 (ENSJJAG00000000573) #14	ENSJJAG00000002946 #15	Socs7 (ENSJJAG00000007563) #16	ENSJJAG00000002004	ENSJJAG00000009505	Npepps (ENSJJAG00000005423) #17	Kpnb1 (ENSJJAG00000010909)	ENSJJAG00000010141	Tbx21 (ENSJJAG00000000813) #18	Osbpl7 (ENSJJAG00000004477) #19	Mrpl10 (ENSJJAG00000004046)	Lrrc46 (ENSJJAG00000010412)	Scrn2 (ENSJJAG00000023635) #20	Sp6 (ENSJJAG00000006452) #21	Sp2 (ENSJJAG00000003061) #22	Pnpo (ENSJJAG00000023608) #23	Prr15l (ENSJJAG00000006478) #24	ENSJJAG00000002511	Copz2 (ENSJJAG00000001025) #25	Nfe2l1 (ENSJJAG00000006432) #26	ENSJJAG00000007753 ##27	ENSJJAG00000005754 #28	Skap1 (ENSJJAG00000003458)	Hoxb1 (ENSJJAG00000001073) #29	Hoxb2 (ENSJJAG00000009465) #30	Hoxb3 (ENSJJAG00000007804) #31	Hoxb4 (ENSJJAG00000002642) #32	Hoxb5 (ENSJJAG00000000763) #33	Hoxb6 (ENSJJAG00000000997) #34	Hoxb7 (ENSJJAG00000001284) #35
Rodentia_A	ANCESTRAL SPECIES	3	ENSGT00940000157961.C #14	ENSGT00860000135964	ENSGT00940000157982.b #15	ENSGT00940000156314 #16	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246 #17	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397 #18	ENSGT00940000157439 #19	ENSGT00390000000603	ENSGT00940000161315	ENSGT00390000013474.b.a #20	ENSGT00940000161498 #21	ENSGT00940000159590 #22	ENSGT00390000011219 #23	ENSGT00940000154534.a #24	ENSGT00390000000713	ENSGT00390000004405.b #25	ENSGT00950000182892.a.b.a.a #26	ENSGT00940000154152.d.b.dc.b #27	ENSGT00940000160113 #28	ENSGT00390000017856.b	ENSGT00940000159503 #29	ENSGT00940000155029.c.b #30	ENSGT00940000159774 #31	ENSGT00940000162072 #32	ENSGT00940000158354 #33	ENSGT00940000161108 #34	ENSGT00940000161230 #35
Hystricomorpha	ANCESTRAL SPECIES	3	ENSGT00940000153451.a.a.a	ENSGT00940000157961.C #14	ENSGT00940000157982.b #15	ENSGT00940000156314 #16	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246 #17	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397 #18	ENSGT00940000157439 #19	ENSGT00390000000603	ENSGT00940000161315	ENSGT00390000013474.b.a #20	ENSGT00940000161498 #21	ENSGT00940000159590 #22	ENSGT00390000011219 #23	ENSGT00940000154534.a #24	ENSGT00390000000713	ENSGT00390000004405.b #25	ENSGT00950000182892.a.b.a.a #26	ENSGT00940000154152.d.b.dc.b #27	ENSGT00940000160113 #28	ENSGT00390000017856.b	ENSGT00940000159503 #29	ENSGT00940000155029.c.b #30	ENSGT00940000159774 #31	ENSGT00940000162072 #32	ENSGT00940000158354 #33	ENSGT00940000161108 #34	ENSGT00940000161230 #35
Hystricomorpha_a	ANCESTRAL SPECIES		ENSGT00940000153451.a.a.a	ENSGT00940000157961.C #14	ENSGT00940000157982.b #15	ENSGT00940000156314 #16	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246 #17	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397 #18	ENSGT00940000157439 #19	ENSGT00390000000603	ENSGT00940000161315	ENSGT00390000013474.b.a #20	ENSGT00940000161498 #21	ENSGT00940000159590 #22	ENSGT00390000011219 #23	ENSGT00940000154534.a #24	ENSGT00390000000713	ENSGT00390000004405.b #25	ENSGT00950000182892.a.b.a.a #26	ENSGT00940000154152.d.b.dc.b #27	ENSGT00940000160113 #28	ENSGT00390000017856.b	ENSGT00940000159503 #29	ENSGT00940000155029.c.b #30	ENSGT00940000159774 #31	ENSGT00940000162072 #32	ENSGT00940000158354 #33	ENSGT00940000161108 #34	ENSGT00940000161230 #35
Hystricomorpha_b	ANCESTRAL SPECIES		ENSGT00940000158572 #13	ENSGT00940000157961.C #14	ENSGT00940000157982.b #15	ENSGT00940000156314 #16	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246 #17	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397 #18	ENSGT00940000157439 #19	ENSGT00390000000603	ENSGT00940000161315	ENSGT00390000013474.b.a #20	ENSGT00940000161498 #21	ENSGT00940000159590 #22	ENSGT00390000011219 #23	ENSGT00940000154534.a #24	ENSGT00390000000713	ENSGT00390000004405.b #25	ENSGT00950000182892.a.b.a.a #26	ENSGT00940000154152.d.b.dc.b #27	ENSGT00940000160113 #28	ENSGT00390000017856.b	ENSGT00940000159503 #29	ENSGT00940000155029.c.b #30	ENSGT00940000159774 #31	ENSGT00940000162072 #32	ENSGT00940000158354 #33	ENSGT00940000161108 #34	ENSGT00940000161230 #35
Long-tailed chinchilla	MODERN SPECIES	158	MLLT6 (ENSCLAG00000013781) #13	SRCIN1 (ENSCLAG00000015589) #14	ARHGAP23 (ENSCLAG00000014290) #15	SOCS7 (ENSCLAG00000015232) #16	GPR179 (ENSCLAG00000014803)	MRPL45 (ENSCLAG00000015324)	NPEPPS (ENSCLAG00000016661) #17	KPNB1 (ENSCLAG00000017091)	ENSCLAG00000015338	TBX21 (ENSCLAG00000015235) #18	OSBPL7 (ENSCLAG00000014839) #19	MRPL10 (ENSCLAG00000015400)	SCRN2 (ENSCLAG00000013965) #20	LRRC46 (ENSCLAG00000016713)	SP6 (ENSCLAG00000016276) #21	SP2 (ENSCLAG00000014115) #22	PNPO (ENSCLAG00000013871) #23	PRR15L (ENSCLAG00000017903) #24	CDK5RAP3 (ENSCLAG00000012292)	COPZ2 (ENSCLAG00000013544) #25	NFE2L1 (ENSCLAG00000014836) #26	CBX1 (ENSCLAG00000013587) #27	SNX11 (ENSCLAG00000015837) #28	SKAP1 (ENSCLAG00000015423)	HOXB1 (ENSCLAG00000013047) #29	HOXB2 (ENSCLAG00000015271) #30	HOXB3 (ENSCLAG00000015322) #31	HOXB4 (ENSCLAG00000014725) #32	HOXB5 (ENSCLAG00000014374) #33	HOXB6 (ENSCLAG00000015524) #34	HOXB7 (ENSCLAG00000014906) #35
Degu	MODERN SPECIES	97	MLLT6 (ENSODEG00000017604) #13	SRCIN1 (ENSODEG00000017506) #14	ARHGAP23 (ENSODEG00000017612) #15	GPR179 (ENSODEG00000017327)	MRPL45 (ENSODEG00000017631)	SOCS7 (ENSODEG00000017559) #16	NPEPPS (ENSODEG00000017337) #17	KPNB1 (ENSODEG00000017287)	ENSODEG00000017455	TBX21 (ENSODEG00000017610) #18	OSBPL7 (ENSODEG00000017364) #19	MRPL10 (ENSODEG00000017536)	LRRC46 (ENSODEG00000017367)	SCRN2 (ENSODEG00000017395) #20	SP6 (ENSODEG00000017625) #21	SP2 (ENSODEG00000017126) #22	PNPO (ENSODEG00000017424) #23	ENSODEG00000017229	COPZ2 (ENSODEG00000017565) #25	ENSODEG00000020421	NFE2L1 (ENSODEG00000017348) #26	CBX1 (ENSODEG00000017272) #27	SNX11 (ENSODEG00000017458) #28	SKAP1 (ENSODEG00000017533)	HOXB1 (ENSODEG00000017050) #29	HOXB2 (ENSODEG00000017153) #30	HOXB3 (ENSODEG00000017116) #31	HOXB4 (ENSODEG00000017038) #32	HOXB5 (ENSODEG00000017253) #33	HOXB6 (ENSODEG00000016988) #34	HOXB8 (ENSODEG00000017119) #36
Guinea pig	MODERN SPECIES	53	EPOP (ENSCPOG00000026798)	SRCIN1 (ENSCPOG00000022478) #14	ARHGAP23 (ENSCPOG00000025821) #15	SOCS7 (ENSCPOG00000011473) #16	GPR179 (ENSCPOG00000027503)	MRPL45 (ENSCPOG00000001574)	NPEPPS (ENSCPOG00000006559) #17	KPNB1 (ENSCPOG00000006566)	TBKBP1 (ENSCPOG00000036345)	TBX21 (ENSCPOG00000026273) #18	OSBPL7 (ENSCPOG00000006914) #19	MRPL10 (ENSCPOG00000037104)	LRRC46 (ENSCPOG00000006925)	SCRN2 (ENSCPOG00000006929) #20	SP6 (ENSCPOG00000007638) #21	SP2 (ENSCPOG00000014943) #22	PNPO (ENSCPOG00000003187) #23	PRR15L (ENSCPOG00000035567) #24	CDK5RAP3 (ENSCPOG00000007275)	COPZ2 (ENSCPOG00000019500) #25	NFE2L1 (ENSCPOG00000030805) #26	CBX1 (ENSCPOG00000034435) #27	SNX11 (ENSCPOG00000020234) #28	SKAP1 (ENSCPOG00000022118)	HOXB1 (ENSCPOG00000022183) #29	HOXB2 (ENSCPOG00000035468) #30	ENSCPOG00000010107 #31	ENSCPOG00000010105	HOXB5 (ENSCPOG00000030746) #33	HOXB6 (ENSCPOG00000040707) #34	HOXB9 (ENSCPOG00000037597) #37
Naked mole-rat female	MODERN SPECIES	12	SRCIN1 (ENSHGLG00000010912) #14	ARHGAP23 (ENSHGLG00000012944) #15	SOCS7 (ENSHGLG00000035093) #16	ENSHGLG00000041148	ENSHGLG00000050482	ENSHGLG00000010863	ENSHGLG00000012466 #17	KPNB1 (ENSHGLG00000014138)	TBKBP1 (ENSHGLG00000049817)	TBX21 (ENSHGLG00000012216) #18	OSBPL7 (ENSHGLG00000012525) #19	MRPL10 (ENSHGLG00000048399)	LRRC46 (ENSHGLG00000035931)	SCRN2 (ENSHGLG00000041375) #20	SP6 (ENSHGLG00000021113) #21	SP2 (ENSHGLG00000009902) #22	PNPO (ENSHGLG00000013159) #23	PRR15L (ENSHGLG00000014696) #24	CDK5RAP3 (ENSHGLG00000019464)	COPZ2 (ENSHGLG00000018543) #25	NFE2L1 (ENSHGLG00000012592) #26	CBX1 (ENSHGLG00000013574) #27	SNX11 (ENSHGLG00000016837) #28	SKAP1 (ENSHGLG00000014563)	HOXB1 (ENSHGLG00000009781) #29	HOXB2 (ENSHGLG00000010090) #30	HOXB3 (ENSHGLG00000010686) #31	HOXB4 (ENSHGLG00000034075) #32	HOXB5 (ENSHGLG00000039265) #33	HOXB6 (ENSHGLG00000012400) #34	HOXB7 (ENSHGLG00000045318) #35
Sciuridae	ANCESTRAL SPECIES	4	ENSGT00940000157961.C #14	ENSGT00860000135964	ENSGT00940000157982.b #15	ENSGT00940000156314 #16	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246 #17	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397 #18	ENSGT00940000157439 #19	ENSGT00390000000603	ENSGT00940000161315	ENSGT00390000013474.b.a #20	ENSGT00940000161498 #21	ENSGT00940000159590 #22	ENSGT00390000011219 #23	ENSGT00940000154534.a #24	ENSGT00390000000713	ENSGT00390000004405.b #25	ENSGT00950000182892.a.b.a.a #26	ENSGT00940000154152.d.b.dc.b #27	ENSGT00940000160113 #28	ENSGT00390000017856.b	ENSGT00940000159503 #29	ENSGT00940000155029.c.b #30	ENSGT00940000159774 #31	ENSGT00940000162072 #32	ENSGT00940000158354 #33	ENSGT00940000161108 #34	ENSGT00940000161230 #35
Marmotini	ANCESTRAL SPECIES	8	ENSGT00940000157961.C #14	ENSGT00860000135964	ENSGT00940000157982.b #15	ENSGT00940000156314 #16	ENSGT00940000160776	ENSGT00390000012679.o	ENSGT00940000155246 #17	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397 #18	ENSGT00940000157439 #19	ENSGT00390000000603	ENSGT00940000161315	ENSGT00390000013474.b.a #20	ENSGT00940000161498 #21	ENSGT00940000159590 #22	ENSGT00390000011219 #23	ENSGT00940000154534.a #24	ENSGT00390000000713	ENSGT00390000004405.b #25	ENSGT00950000182892.a.b.a.a #26	ENSGT00940000154152.d.b.dc.b #27	ENSGT00940000160113 #28	ENSGT00390000017856.b	ENSGT00940000159503 #29	ENSGT00940000155029.c.b #30	ENSGT00940000159774 #31	ENSGT00940000162072 #32	ENSGT00940000158354 #33	ENSGT00940000161108 #34	ENSGT00940000161230 #35
Marmotini_b	ANCESTRAL SPECIES	5	ENSGT00940000153451.a.a.a	ENSGT00940000157961.C #14	ENSGT00940000157982.b #15	ENSGT00940000156314 #16	ENSGT00940000160776	ENSGT00390000012679.o	ENSGT00940000155246 #17	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397 #18	ENSGT00940000157439 #19	ENSGT00390000000603	ENSGT00940000161315	ENSGT00390000013474.b.a #20	ENSGT00940000161498 #21	ENSGT00940000159590 #22	ENSGT00390000011219 #23	ENSGT00940000154534.a #24	ENSGT00390000000713	ENSGT00390000004405.b #25	ENSGT00950000182892.a.b.a.a #26	ENSGT00940000154152.d.b.dc.b #27	ENSGT00940000160113 #28	ENSGT00390000017856.b	ENSGT00940000159503 #29	ENSGT00940000155029.c.b #30	ENSGT00940000159774 #31	ENSGT00940000162072 #32	ENSGT00940000158354 #33	ENSGT00940000161108 #34	ENSGT00940000161230 #35
Squirrel	MODERN SPECIES	90	EPOP (ENSSTOG00000022964)	SRCIN1 (ENSSTOG00000028994) #14	ARHGAP23 (ENSSTOG00000029240) #15	SOCS7 (ENSSTOG00000000068) #16	GPR179 (ENSSTOG00000024299)	ENSSTOG00000000304	NPEPPS (ENSSTOG00000004901) #17	KPNB1 (ENSSTOG00000007896)	TBKBP1 (ENSSTOG00000023713)	TBX21 (ENSSTOG00000001626) #18	OSBPL7 (ENSSTOG00000001636) #19	MRPL10 (ENSSTOG00000024617)	LRRC46 (ENSSTOG00000002068)	SCRN2 (ENSSTOG00000027108) #20	SP6 (ENSSTOG00000001607) #21	SP2 (ENSSTOG00000015926) #22	PNPO (ENSSTOG00000006221) #23	PRR15L (ENSSTOG00000006235) #24	CDK5RAP3 (ENSSTOG00000006244)	ENSSTOG00000027550 #25	NFE2L1 (ENSSTOG00000013664) #26	CBX1 (ENSSTOG00000023986) #27	SNX11 (ENSSTOG00000013684) #28	SKAP1 (ENSSTOG00000013692)	HOXB1 (ENSSTOG00000028630) #29	HOXB2 (ENSSTOG00000023586) #30	HOXB3 (ENSSTOG00000025093) #31	HOXB4 (ENSSTOG00000009734) #32	HOXB5 (ENSSTOG00000009740) #33	HOXB6 (ENSSTOG00000020303) #34	HOXB7 (ENSSTOG00000025657) #35
Arctic ground squirrel	MODERN SPECIES	46	MLLT6 (ENSUPAG00010006969) #13	SRCIN1 (ENSUPAG00010006849) #14	ARHGAP23 (ENSUPAG00010006763) #15	SOCS7 (ENSUPAG00010006716) #16	GPR179 (ENSUPAG00010006698)	ENSUPAG00010006685	NPEPPS (ENSUPAG00010006649) #17	KPNB1 (ENSUPAG00010006624)	TBKBP1 (ENSUPAG00010006591)	TBX21 (ENSUPAG00010006582) #18	OSBPL7 (ENSUPAG00010006545) #19	MRPL10 (ENSUPAG00010006539)	LRRC46 (ENSUPAG00010006533)	SCRN2 (ENSUPAG00010006526) #20	SP6 (ENSUPAG00010006522) #21	SP2 (ENSUPAG00010006507) #22	PNPO (ENSUPAG00010006483) #23	PRR15L (ENSUPAG00010006473) #24	CDK5RAP3 (ENSUPAG00010006466)	COPZ2 (ENSUPAG00010006455) #25	NFE2L1 (ENSUPAG00010006396) #26	CBX1 (ENSUPAG00010006381) #27	SNX11 (ENSUPAG00010006370) #28	SKAP1 (ENSUPAG00010006345)	HOXB1 (ENSUPAG00010006340) #29	HOXB2 (ENSUPAG00010006336) #30	HOXB3 (ENSUPAG00010006328) #31	HOXB4 (ENSUPAG00010006325) #32	HOXB5 (ENSUPAG00010006320) #33	HOXB6 (ENSUPAG00010006317) #34	HOXB7 (ENSUPAG00010006312) #35
Alpin marmot	MODERN SPECIES	126	ENSMMMG00000020172	ARHGAP23 (ENSMMMG00000020178) #15	SOCS7 (ENSMMMG00000020236) #16	GPR179 (ENSMMMG00000020262)	ENSMMMG00000020288	NPEPPS (ENSMMMG00000020297) #17	KPNB1 (ENSMMMG00000020318)	ENSMMMG00000020322	TBX21 (ENSMMMG00000020329) #18	ENSMMMG00000020333	OSBPL7 (ENSMMMG00000020336) #19	MRPL10 (ENSMMMG00000020352)	LRRC46 (ENSMMMG00000020356)	SCRN2 (ENSMMMG00000020372) #20	SP6 (ENSMMMG00000020386) #21	SP2 (ENSMMMG00000020394) #22	PNPO (ENSMMMG00000020407) #23	PRR15L (ENSMMMG00000020424) #24
Eurasian red squirrel	DUPLICATION
Eurasian red squirrel	MODERN SPECIES	12	SRCIN1 (ENSSVLG00005016103) #14	ARHGAP23 (ENSSVLG00005016593) #15	SOCS7 (ENSSVLG00005016676) #16	GPR179 (ENSSVLG00005016761)	ENSSVLG00005017021	MRPL45 (ENSSVLG00005017084)	NPEPPS (ENSSVLG00005017198) #17	KPNB1 (ENSSVLG00005017557)	TBKBP1 (ENSSVLG00005017602)	TBX21 (ENSSVLG00005017653) #18	OSBPL7 (ENSSVLG00005017757) #19	MRPL10 (ENSSVLG00005017985)	LRRC46 (ENSSVLG00005018036)	SCRN2 (ENSSVLG00005018077) #20	SP6 (ENSSVLG00005018194) #21	ENSSVLG00005018218 #22	PNPO (ENSSVLG00005018295) #23	PRR15L (ENSSVLG00005018399) #24	CDK5RAP3 (ENSSVLG00005018459)	COPZ2 (ENSSVLG00005018641) #25	NFE2L1 (ENSSVLG00005018798) #26	CBX1 (ENSSVLG00005019034) #27	SNX11 (ENSSVLG00005019122) #28	SKAP1 (ENSSVLG00005019232)	HOXB1 (ENSSVLG00005019304) #29	HOXB2 (ENSSVLG00005019378) #30	HOXB3 (ENSSVLG00005019421) #31	HOXB4 (ENSSVLG00005019455) #32	HOXB5 (ENSSVLG00005019546) #33	HOXB6 (ENSSVLG00005019586) #34	HOXB7 (ENSSVLG00005019618) #35
Eurasian red squirrel	MODERN SPECIES	8	CABP5 (ENSSVLG00005015933)	ENSSVLG00005016000	ELSPBP1 (ENSSVLG00005016038)	BSPH1 (ENSSVLG00005016144)	ENSSVLG00005016193	PLA2G4C (ENSSVLG00005016365)	LIG1 (ENSSVLG00005016507)	ZSWIM9 (ENSSVLG00005016795)	ENSSVLG00005016818	ENSSVLG00005016867	ENSSVLG00005016918	ENSSVLG00005016954	ENSSVLG00005016972	ENSSVLG00005017037	ENSSVLG00005017076	ENSSVLG00005017091 #22	ENSSVLG00005017112	ENSSVLG00005017163	EMP3 (ENSSVLG00005017530)	TMEM143 (ENSSVLG00005017613)	SYNGR4 (ENSSVLG00005017908)	ENSSVLG00005017961	GRIN2D (ENSSVLG00005018033)	GRWD1 (ENSSVLG00005018183)	KCNJ14 (ENSSVLG00005018257)	CYTH2 (ENSSVLG00005018286)	LMTK3 (ENSSVLG00005018367)	SULT2B1 (ENSSVLG00005018677)	FAM83E (ENSSVLG00005018800)	SPACA4 (ENSSVLG00005018869)	ENSSVLG00005018906
Lagomorpha	ANCESTRAL SPECIES		ENSGT00940000158572 #13	ENSGT00940000157961.C #14	ENSGT00940000157982.b #15	ENSGT00940000156314 #16	ENSGT00940000160776	ENSGT00390000012679	ENSGT00940000155246 #17	ENSGT00550000074898	ENSGT00940000153704.B	ENSGT00940000160397 #18	ENSGT00940000157439 #19	ENSGT00390000000603	ENSGT00940000161315	ENSGT00390000013474.b.a #20	ENSGT00940000161498 #21	ENSGT00940000159590 #22	ENSGT00390000011219 #23	ENSGT00940000154534.a #24	ENSGT00390000000713	ENSGT00390000004405.b #25	ENSGT00950000182892.a.b.a.a #26	ENSGT00940000154152.d.b.dc #27	ENSGT00940000160113 #28	ENSGT00390000017856.b	ENSGT00940000159503 #29	ENSGT00940000155029.c.b #30	ENSGT00940000159774 #31	ENSGT00940000158354 #33	ENSGT00940000161108 #34	ENSGT00940000161529 #36	ENSGT00940000161386 #37
Rabbit	MODERN SPECIES	10	MLLT6 (ENSOCUG00000027604) #13	SRCIN1 (ENSOCUG00000005505) #14	ARHGAP23 (ENSOCUG00000011758) #15	SOCS7 (ENSOCUG00000015724) #16	GPR179 (ENSOCUG00000015704)	MRPL45 (ENSOCUG00000015690)	NPEPPS (ENSOCUG00000015748) #17	KPNB1 (ENSOCUG00000015425)	TBKBP1 (ENSOCUG00000014771)	TBX21 (ENSOCUG00000012907) #18	OSBPL7 (ENSOCUG00000009447) #19	MRPL10 (ENSOCUG00000009452)	LRRC46 (ENSOCUG00000009453)	SCRN2 (ENSOCUG00000009457) #20	SP6 (ENSOCUG00000023482) #21	SP2 (ENSOCUG00000027415) #22	PNPO (ENSOCUG00000017484) #23	PRR15L (ENSOCUG00000017489) #24	CDK5RAP3 (ENSOCUG00000012325)	COPZ2 (ENSOCUG00000001802) #25	NFE2L1 (ENSOCUG00000022298) #26	CBX1 (ENSOCUG00000008021) #27	SNX11 (ENSOCUG00000002309) #28	SKAP1 (ENSOCUG00000001717)	HOXB1 (ENSOCUG00000001720) #29	HOXB2 (ENSOCUG00000024951) #30	HOXB3 (ENSOCUG00000023337) #31	HOXB6 (ENSOCUG00000011560) #34	HOXB5 (ENSOCUG00000023093) #33	HOXB8 (ENSOCUG00000029186) #36	HOXB9 (ENSOCUG00000027316) #37
Pika	MODERN SPECIES	633							NPEPPS (ENSOPRG00000003735) #17	KPNB1 (ENSOPRG00000003795)	TBKBP1 (ENSOPRG00000003843)	TBX21 (ENSOPRG00000003888) #18	OSBPL7 (ENSOPRG00000003904) #19	MRPL10 (ENSOPRG00000003949)	LRRC46 (ENSOPRG00000003963)	SCRN2 (ENSOPRG00000003992) #20	SP6 (ENSOPRG00000004019) #21	SP2 (ENSOPRG00000004048) #22	PNPO (ENSOPRG00000004080) #23	CDK5RAP3 (ENSOPRG00000004107)
Tree shrew	MODERN SPECIES	8668																SP2 (ENSTBEG00000013463) #22