Rodentia_A	ANCESTRAL SPECIES	1	ENSGT01080000257336.a.c.a #8	ENSGT00940000163536 #9	ENSGT00950000182887.C.a.b #10	ENSGT00390000008610.a.b.a.b #11	ENSGT00940000161093 #12	ENSGT00940000159690 #13	ENSGT00940000156163 #14	ENSGT00530000063947.C #15	ENSGT01030000234582.e.b #16	ENSGT01030000234582.f.a.b #17	ENSGT00390000012877 #18	ENSGT00940000158413 #19	ENSGT00530000063516.a.a.c.b.t #20	ENSGT00530000063516.a.a.d ##20	ENSGT00440000033232.d #21	ENSGT00390000009554 #22	ENSGT00940000162288 #23	ENSGT00940000162702 #24	ENSGT00940000160984 #26	ENSGT00730000110920.a #27	ENSGT00940000163174 #28	ENSGT00390000009497	ENSGT00940000156536 #29	ENSGT00940000155350 #30	ENSGT00940000156251 #31	ENSGT00950000182988.a.b.a #33	ENSGT00530000063816.c #34	ENSGT00390000010063 #35	ENSGT00530000064411 #36	ENSGT00390000011958 #37	ENSGT00390000010128
Sciuridae	ANCESTRAL SPECIES	2	ENSGT01080000257336.a.c.a #8	ENSGT00940000163536 #9	ENSGT00950000182887.C.a.b #10	ENSGT00390000008610.a.b.a.b #11	ENSGT00940000161093 #12	ENSGT00940000159690 #13	ENSGT00940000156163 #14	ENSGT00530000063947.C #15	ENSGT01030000234582.e.b #16	ENSGT01030000234582.f.a.b #17	ENSGT00390000012877 #18	ENSGT00940000158413 #19	ENSGT00530000063516.a.a.c.b.t #20	ENSGT00530000063516.a.a.d ##20	ENSGT00440000033232.d #21	ENSGT00390000009554 #22	ENSGT00940000162288 #23	ENSGT00940000162702 #24	ENSGT00940000160984 #26	ENSGT00730000110920.a #27	ENSGT00940000163174 #28	ENSGT00940000156536 #29	ENSGT00940000155350 #30	ENSGT00940000156251 #31	ENSGT00950000182988.a.b.a #33	ENSGT00530000063816.c #34	ENSGT00390000010063 #35	ENSGT00530000064411 #36	ENSGT00390000011958 #37	ENSGT00390000010128	ENSGT00940000160762
Eurasian red squirrel	MODERN SPECIES	2	OR2AT4 (ENSSVLG00005021320) #7	SLCO2B1 (ENSSVLG00005021400) #8	TPBGL (ENSSVLG00005021827) #9	ENSSVLG00005021867 #10	ENSSVLG00005022121 #11	KLHL35 (ENSSVLG00005022223) #12	GDPD5 (ENSSVLG00005022336) #13	SERPINH1 (ENSSVLG00005022497) #14	MAP6 (ENSSVLG00005022557) #15	MOGAT2 (ENSSVLG00005022595) #16	DGAT2 (ENSSVLG00005022688) #17	UVRAG (ENSSVLG00005022785) #18	WNT11 (ENSSVLG00005022863) #19	THAP12 (ENSSVLG00005022917) #20	GVQW3 (ENSSVLG00005022970) #21	EMSY (ENSSVLG00005023093) #22	LRRC32 (ENSSVLG00005023371) #23	ENSSVLG00005023498 #24	ENSSVLG00005023846 #25	TSKU (ENSSVLG00005023871) #26	ACER3 (ENSSVLG00005023904) #27	B3GNT6 (ENSSVLG00005012209) #28	CAPN5 (ENSSVLG00005012247) #29	MYO7A (ENSSVLG00005012423) #30	GDPD4 (ENSSVLG00005013184) #31	ENSSVLG00005013294 #32	PAK1 (ENSSVLG00005013431) #33	AQP11 (ENSSVLG00005013502) #34	CLNS1A (ENSSVLG00005013729) #35	RSF1 (ENSSVLG00005013858) #36	AAMDC (ENSSVLG00005013937) #37
Marmotini	ANCESTRAL SPECIES	28	ENSGT01080000257336.a.c.a #8	ENSGT00940000163536 #9	ENSGT00950000182887.C.a.b #10	ENSGT00390000008610.a.b.a.b #11	ENSGT00940000161093 #12	ENSGT00940000159690 #13	ENSGT00940000156163 #14	ENSGT00530000063947.C #15	ENSGT01030000234582.e.b #16	ENSGT01030000234582.f.a.b #17	ENSGT00390000012877 #18	ENSGT00940000158413 #19	ENSGT00530000063516.a.a.c.b.t #20	ENSGT00530000063516.a.a.d ##20	ENSGT00440000033232.d #21	ENSGT00390000009554 #22	ENSGT00940000162288 #23	ENSGT00940000162702 #24	ENSGT00940000160984 #26	ENSGT00730000110920.a #27	ENSGT00940000163174 #28	ENSGT00940000156536 #29	ENSGT00940000155350 #30	ENSGT00940000156251 #31	ENSGT00950000182988.a.b.a #33	ENSGT00530000063816.c #34	ENSGT00390000010063.ab #35	ENSGT00530000064411 #36	ENSGT00390000011958 #37	ENSGT00390000010128	ENSGT00940000160762
Alpin marmot	MODERN SPECIES	3	RNF169 (ENSMMMG00000010273)	XRRA1 (ENSMMMG00000010212)	SPCS2 (ENSMMMG00000010185)	NEU3 (ENSMMMG00000010144)	SLCO2B1 (ENSMMMG00000010020) #8	ARRB1 (ENSMMMG00000009891) #10	RPS3 (ENSMMMG00000009823) #11	GDPD5 (ENSMMMG00000009761) #13	SERPINH1 (ENSMMMG00000009745) #14	MAP6 (ENSMMMG00000009732) #15	MOGAT2 (ENSMMMG00000009708) #16	DGAT2 (ENSMMMG00000009694) #17	UVRAG (ENSMMMG00000009669) #18	WNT11 (ENSMMMG00000009631) #19	GVQW3 (ENSMMMG00000009582) #21	EMSY (ENSMMMG00000009455) #22	LRRC32 (ENSMMMG00000009408) #23	ENSMMMG00000009326 #24	TSKU (ENSMMMG00000009316) #26	ACER3 (ENSMMMG00000009260) #27	B3GNT6 (ENSMMMG00000009247) #28	CAPN5 (ENSMMMG00000009202) #29	MYO7A (ENSMMMG00000008595) #30	GDPD4 (ENSMMMG00000008571) #31	ENSMMMG00000008545	PAK1 (ENSMMMG00000007056) #33	AQP11 (ENSMMMG00000007031) #34	CLNS1A (ENSMMMG00000007023) #35	RSF1 (ENSMMMG00000006970) #36	ENSMMMG00000006961 #37	INTS4 (ENSMMMG00000006934)
Marmotini_b	ANCESTRAL SPECIES	13	ENSGT01080000257336.a.c.a #8	ENSGT00940000163536 #9	ENSGT00950000182887.C.a.b #10	ENSGT00390000008610.a.b.a.b #11	ENSGT00940000161093 #12	ENSGT00940000159690 #13	ENSGT00940000156163 #14	ENSGT00530000063947.C #15	ENSGT01030000234582.e.b #16	ENSGT01030000234582.f.a.b #17	ENSGT00390000012877 #18	ENSGT00940000158413 #19	ENSGT00530000063516.a.a.c.b.t #20	ENSGT00530000063516.a.a.d ##20	ENSGT00440000033232.d #21	ENSGT00390000009554 #22	ENSGT00940000162288 #23	ENSGT00940000162702 #24	ENSGT00940000160984 #26	ENSGT00730000110920.a #27	ENSGT00940000163174 #28	ENSGT00940000156536 #29	ENSGT00940000155350 #30	ENSGT00940000156251 #31	ENSGT00950000182988.a.b.a #33	ENSGT00530000063816.c #34	ENSGT00390000010063.ab.a #35	ENSGT00530000064411 #36	ENSGT00390000011958 #37	ENSGT00390000010128	ENSGT00940000160762
Squirrel	MODERN SPECIES	98	ENSSTOG00000020894	OR2AT4 (ENSSTOG00000030885) #7	SLCO2B1 (ENSSTOG00000012655) #8	TPBGL (ENSSTOG00000027127) #9	ARRB1 (ENSSTOG00000004545) #10	ENSSTOG00000028813 ##11	KLHL35 (ENSSTOG00000027931) #12	GDPD5 (ENSSTOG00000004596) #13	SERPINH1 (ENSSTOG00000027738) #14	ENSSTOG00000015949 #15	ENSSTOG00000024696	MOGAT2 (ENSSTOG00000012010) #16	DGAT2 (ENSSTOG00000012018) #17	UVRAG (ENSSTOG00000016316) #18	WNT11 (ENSSTOG00000029064) #19	EMSY (ENSSTOG00000001193) #22	ENSSTOG00000027244	LRRC32 (ENSSTOG00000007128) #23	ENSSTOG00000023620 #24	TSKU (ENSSTOG00000021957) #26	ACER3 (ENSSTOG00000002656) #27	B3GNT6 (ENSSTOG00000027714) #28	CAPN5 (ENSSTOG00000022877) #29	MYO7A (ENSSTOG00000002703) #30	GDPD4 (ENSSTOG00000002750) #31	ENSSTOG00000034844	PAK1 (ENSSTOG00000012786) #33	ENSSTOG00000004006 #34	ENSSTOG00000027980 #35	ENSSTOG00000009982	RSF1 (ENSSTOG00000004021) #36
Arctic ground squirrel	MODERN SPECIES	48	TPBGL (ENSUPAG00010013579) #9	ARRB1 (ENSUPAG00010013533) #10	RPS3 (ENSUPAG00010013480) #11	KLHL35 (ENSUPAG00010013466) #12	GDPD5 (ENSUPAG00010013418) #13	SERPINH1 (ENSUPAG00010013397) #14	ENSUPAG00010013392	ENSUPAG00010013378 #15	MOGAT2 (ENSUPAG00010013360) #16	DGAT2 (ENSUPAG00010013352) #17	UVRAG (ENSUPAG00010013333) #18	WNT11 (ENSUPAG00010013326) #19	THAP12 (ENSUPAG00010013320) #20	ENSUPAG00010013311 ##20	GVQW3 (ENSUPAG00010013303) #21	EMSY (ENSUPAG00010013019) #22	ENSUPAG00010013002	LRRC32 (ENSUPAG00010012993) #23	ENSUPAG00010012917 #24	TSKU (ENSUPAG00010012903) #26	B3GNT6 (ENSUPAG00010012889) #28	ACER3 (ENSUPAG00010012835) #27	CAPN5 (ENSUPAG00010012806) #29	MYO7A (ENSUPAG00010012134) #30	GDPD4 (ENSUPAG00010012115) #31	PAK1 (ENSUPAG00010012099) #33	AQP11 (ENSUPAG00010012087) #34	ENSUPAG00010012077 #35	RSF1 (ENSUPAG00010012048) #36	AAMDC (ENSUPAG00010012036) #37	INTS4 (ENSUPAG00010012011)
Hystricomorpha	ANCESTRAL SPECIES	5	ENSGT00940000163113 #7	ENSGT01080000257336.a.c.a #8	ENSGT00940000163536 #9	ENSGT00950000182887.C.a.b #10	ENSGT00390000008610.a.b.a.b #11	ENSGT00940000161093 #12	ENSGT00940000159690 #13	ENSGT00940000156163 #14	ENSGT00530000063947.C #15	ENSGT01030000234582.e.b #16	ENSGT01030000234582.f.a.b #17	ENSGT00390000012877 #18	ENSGT00940000158413 #19	ENSGT00530000063516.a.a.c.b.t #20	ENSGT00440000033232.d #21	ENSGT00390000009554 #22	ENSGT00940000162288 #23	ENSGT00940000162702 #24	ENSGT00940000160984 #26	ENSGT00730000110920.a #27	ENSGT00940000163174 #28	ENSGT00390000009497	ENSGT00940000156536 #29	ENSGT00940000155350 #30	ENSGT00940000156251 #31	ENSGT00950000182988.a.b.a #33	ENSGT00530000063816.c #34	ENSGT00390000010063 #35	ENSGT00530000064411 #36	ENSGT00390000011958 #37	ENSGT00390000010128
Hystricomorpha_a	ANCESTRAL SPECIES	10	ENSGT00940000162049	ENSGT00940000163113 #7	ENSGT01080000257336.a.c.a #8	ENSGT00940000163536 #9	ENSGT00950000182887.C.a.b #10	ENSGT00390000008610.a.b.a.b #11	ENSGT00940000161093 #12	ENSGT00940000159690 #13	ENSGT00940000156163 #14	ENSGT00530000063947.C #15	ENSGT01030000234582.e.b #16	ENSGT01030000234582.f.a.b #17	ENSGT00390000012877 #18	ENSGT00940000158413 #19	ENSGT00530000063516.a.a.c.b.t #20	ENSGT00390000009554 #22	ENSGT00940000162288 #23	ENSGT00940000162702 #24	ENSGT00940000160984 #26	ENSGT00730000110920.a #27	ENSGT00940000163174 #28	ENSGT00940000156536 #29	ENSGT00940000155350 #30	ENSGT00940000156251 #31	ENSGT00950000182988.a.b.a #33	ENSGT00530000063816.c #34	ENSGT00390000010063 #35	ENSGT00530000064411 #36	ENSGT00390000011958 #37	ENSGT00390000010128	ENSGT00940000160762
Hystricomorpha_b	ANCESTRAL SPECIES	5	ENSGT00940000162049	ENSGT00940000163113 #7	ENSGT01080000257336.a.c.a #8	ENSGT00940000163536 #9	ENSGT00950000182887.C.a.b #10	ENSGT00390000008610.a.b.a.b #11	ENSGT00940000161093 #12	ENSGT00940000159690 #13	ENSGT00940000156163 #14	ENSGT00530000063947.C #15	ENSGT01030000234582.e.b #16	ENSGT01030000234582.f.a.b #17	ENSGT00390000012877 #18	ENSGT00940000158413 #19	ENSGT00530000063516.a.a.c.b.t #20	ENSGT00390000009554 #22	ENSGT00940000162288 #23	ENSGT00940000162702 #24	ENSGT00940000160984 #26	ENSGT00730000110920.a #27	ENSGT00940000163174 #28	ENSGT00940000156536 #29	ENSGT00940000155350 #30	ENSGT00940000156251 #31	ENSGT00950000182988.a.b.a #33	ENSGT00530000063816.c #34	ENSGT00390000010063 #35	ENSGT00530000064411 #36	ENSGT00390000011958 #37	ENSGT00390000010128	ENSGT00390000010352
Long-tailed chinchilla	MODERN SPECIES	121	XRRA1 (ENSCLAG00000014397)	SPCS2 (ENSCLAG00000016410)	NEU3 (ENSCLAG00000015476)	SLCO2B1 (ENSCLAG00000013902) #8	TPBGL (ENSCLAG00000016335) #9	ARRB1 (ENSCLAG00000014486) #10	RPS3 (ENSCLAG00000013819) #11	KLHL35 (ENSCLAG00000015297) #12	GDPD5 (ENSCLAG00000015415) #13	SERPINH1 (ENSCLAG00000013718) #14	ENSCLAG00000015204 #15	DGAT2 (ENSCLAG00000015138) #17	UVRAG (ENSCLAG00000016075) #18	WNT11 (ENSCLAG00000014333) #19	THAP12 (ENSCLAG00000014847) #20	EMSY (ENSCLAG00000015699) #22	LRRC32 (ENSCLAG00000016535) #23	ENSCLAG00000014932 #24	TSKU (ENSCLAG00000016143) #26	ENSCLAG00000015013	ACER3 (ENSCLAG00000014899) #27	B3GNT6 (ENSCLAG00000018076) #28	CAPN5 (ENSCLAG00000016170) #29	MYO7A (ENSCLAG00000013818) #30	GDPD4 (ENSCLAG00000016359) #31	PAK1 (ENSCLAG00000013320) #33	AQP11 (ENSCLAG00000016580) #34	CLNS1A (ENSCLAG00000014638) #35	RSF1 (ENSCLAG00000014769) #36	AAMDC (ENSCLAG00000013898) #37	INTS4 (ENSCLAG00000015884)
Degu	MODERN SPECIES	90	ENSODEG00000004518	OR2AT4 (ENSODEG00000004509) #7	SLCO2B1 (ENSODEG00000004779) #8	TPBGL (ENSODEG00000004759) #9	ARRB1 (ENSODEG00000004633) #10	ENSODEG00000004564 #11	KLHL35 (ENSODEG00000004522) #12	ENSODEG00000004513	SERPINH1 (ENSODEG00000004317) #14	ENSODEG00000004327 #15	MOGAT2 (ENSODEG00000004302) #16	DGAT2 (ENSODEG00000004293) #17	UVRAG (ENSODEG00000004147) #18	WNT11 (ENSODEG00000003887) #19	ENSODEG00000003873 ##20	EMSY (ENSODEG00000003710) #22	LRRC32 (ENSODEG00000008307) #23	ENSODEG00000008288 #24	TSKU (ENSODEG00000019557) #26
Guinea pig	MODERN SPECIES	40											MOGAT2 (ENSCPOG00000037142) #16	DGAT2 (ENSCPOG00000004409) #17	UVRAG (ENSCPOG00000010164) #18	WNT11 (ENSCPOG00000009182) #19	THAP12 (ENSCPOG00000013167) #20	EMSY (ENSCPOG00000010198) #22	LRRC32 (ENSCPOG00000004677) #23	ENSCPOG00000000712 #24	TSKU (ENSCPOG00000036466) #26	ACER3 (ENSCPOG00000036907) #27	B3GNT6 (ENSCPOG00000040405) #28	CAPN5 (ENSCPOG00000004296) #29	MYO7A (ENSCPOG00000026904) #30	GDPD4 (ENSCPOG00000008503) #31	PAK1 (ENSCPOG00000000164) #33	AQP11 (ENSCPOG00000005258) #34	CLNS1A (ENSCPOG00000005260) #35	RSF1 (ENSCPOG00000005261) #36	AAMDC (ENSCPOG00000004417) #37	INTS4 (ENSCPOG00000012466)	KCTD14 (ENSCPOG00000037873)
Naked mole-rat female	MODERN SPECIES	24	TPBGL (ENSHGLG00000021318) #9	ARRB1 (ENSHGLG00000015558) #10	RPS3 (ENSHGLG00000019339) #11	KLHL35 (ENSHGLG00000004947) #12	GDPD5 (ENSHGLG00000009912) #13	SERPINH1 (ENSHGLG00000007288) #14	MAP6 (ENSHGLG00000005485) #15	ENSHGLG00000043050	MOGAT2 (ENSHGLG00000005337) #16	DGAT2 (ENSHGLG00000003971) #17	ENSHGLG00000039982	UVRAG (ENSHGLG00000003077) #18	WNT11 (ENSHGLG00000010701) #19	THAP12 (ENSHGLG00000043567) #20	GVQW3 (ENSHGLG00000047967) #21	EMSY (ENSHGLG00000006473) #22	LRRC32 (ENSHGLG00000019111) #23	ENSHGLG00000019386 #24	ENSHGLG00000019448 #26	ENSHGLG00000046732	ENSHGLG00000040669	ENSHGLG00000046387	ENSHGLG00000043666	ENSHGLG00000007972	ENSHGLG00000017959	ACER3 (ENSHGLG00000010087) #27	ENSHGLG00000037392 #28	OMP (ENSHGLG00000046318)	CAPN5 (ENSHGLG00000002816) #29	MYO7A (ENSHGLG00000011345) #30	GDPD4 (ENSHGLG00000003760) #31