Chordata	ANCESTRAL SPECIES																	ENSGT00940000155543 #22
Vertebrata	ANCESTRAL SPECIES																	ENSGT00940000155543 #22
Gnathostomata	ANCESTRAL SPECIES	451												ENSGT01030000234623.a.a.b	ENSGT00940000157218.C	ENSGT00950000183053.A	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000157669	ENSGT00940000157034	ENSGT00940000165326
Euteleostomi	ANCESTRAL SPECIES	76	ENSGT00940000155019.a.a	ENSGT01000000214440.A.a.b.a #7	ENSGT00940000156139 #23	ENSGT00940000159638	ENSGT00940000160209	ENSGT00940000158079	ENSGT00940000159949	ENSGT00940000155058	ENSGT00510000047363	ENSGT00940000155104	ENSGT01030000235111	ENSGT01030000234623.a.a.b	ENSGT00940000157218.C	ENSGT00950000183053.A	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000157669	ENSGT00940000155393.d	ENSGT00940000157034	ENSGT00940000165326	ENSGT00940000160992	ENSGT00940000160504	ENSGT00940000167209	ENSGT00940000156761	ENSGT00410000025596.a.b #26	ENSGT00390000002144 #25	ENSGT00940000164873
Sarcopterygii	ANCESTRAL SPECIES	55	ENSGT00390000016565	ENSGT00950000182900.B	ENSGT00390000007371	ENSGT00940000154868.a.b	ENSGT00940000160932	ENSGT00940000156338	ENSGT01060000248564.b.a.a.a	ENSGT00950000182962.b.a	ENSGT00390000018883	ENSGT00940000157554	ENSGT00940000163923	ENSGT00940000160073	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000157669	ENSGT00940000155393.d	ENSGT00940000157034	ENSGT00940000165326	ENSGT00940000160992	ENSGT00940000160504	ENSGT00940000167209	ENSGT00940000156761	ENSGT00410000025596.a.b #26	ENSGT00390000002144 #25	ENSGT00940000164873	ENSGT00940000159933	ENSGT00390000015655.a	ENSGT00940000158415	ENSGT00940000159782
Tetrapoda	ANCESTRAL SPECIES	38	ENSGT00950000182900.B	ENSGT00390000007371	ENSGT00940000154868.a.b	ENSGT00940000160932	ENSGT00940000159398	ENSGT00940000157531	ENSGT01060000248564.b.a.a.a	ENSGT00950000182962.b.a	ENSGT00390000018883	ENSGT00940000157554	ENSGT00940000163923	ENSGT00940000160073	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000157669	ENSGT00940000155393.d	ENSGT00940000157034	ENSGT00940000165326	ENSGT00940000160992	ENSGT00940000160504	ENSGT00940000167209	ENSGT00940000156761	ENSGT00410000025596.a.b #26	ENSGT00390000002144 #25	ENSGT00940000164873	ENSGT00940000156139 #23	ENSGT00940000155019.a.a	ENSGT00960000189438	ENSGT00940000157833
Amniota	ANCESTRAL SPECIES	47													ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000157669	ENSGT00940000157034	ENSGT00940000161085	ENSGT00940000160992	ENSGT00940000160504	ENSGT00940000167209	ENSGT00940000156761	ENSGT01100000263839	ENSGT00410000025596.a.b #26	ENSGT00390000002144 #25	ENSGT00940000164873	ENSGT00940000162094 #24	ENSGT00940000156139 #23	ENSGT00940000155019.a.a	ENSGT00960000189438
Mammalia	ANCESTRAL SPECIES	19	ENSGT00940000163923	ENSGT00940000160073	ENSGT01000000214440.A.a.b.a #7	ENSGT00940000156115 #8	ENSGT00530000063770.c.a #9	ENSGT00390000010045 #10	ENSGT00950000183182.a.a #11	ENSGT01090000260093.b #12	ENSGT00950000182978.B #13	ENSGT01060000248589.D	ENSGT00390000012569.a #16	ENSGT00390000006264 #17	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #23	ENSGT00940000162094 #24	ENSGT00940000164873	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT01100000263839	ENSGT00940000156761	ENSGT00940000160504	ENSGT00940000160992	ENSGT00940000161085	ENSGT00940000157034	ENSGT00940000153587.b	ENSGT00940000153511.a	ENSGT01010000222287.B.b.a.b.a	ENSGT00950000182852.A.b
Theria	ANCESTRAL SPECIES	16	ENSGT00940000157554	ENSGT00940000160073	ENSGT01000000214440.A.a.b.a #7	ENSGT00940000156115 #8	ENSGT00530000063770.c.a #9	ENSGT00390000010045 #10	ENSGT00950000183182.a.a #11	ENSGT01090000260093.b #12	ENSGT00950000182978.B #13	ENSGT01060000248589.D	ENSGT00390000012569.a #16	ENSGT00390000006264 #17	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #23	ENSGT00940000162094 #24	ENSGT00940000164873	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT01100000263839	ENSGT00940000156761	ENSGT00940000157669	ENSGT00940000157833	ENSGT00530000063698.b	ENSGT00940000156213	ENSGT00940000156592	ENSGT00940000157151	ENSGT00940000159638	ENSGT00940000153446.a.b
Eutheria	ANCESTRAL SPECIES		ENSGT00940000163178	ENSGT00940000160073	ENSGT01000000214440.A.a.b.a #7	ENSGT00940000156115 #8	ENSGT00530000063770.c.a #9	ENSGT00390000010045 #10	ENSGT00950000183182.a.a #11	ENSGT01090000260093.b #12	ENSGT00950000182978.B #13	ENSGT01060000248589.D	ENSGT00390000012569.a #16	ENSGT00390000006264 #17	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #23	ENSGT00940000162094 #24	ENSGT00940000164873	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT01100000263839	ENSGT00940000156761	ENSGT00940000157669	ENSGT00940000157833	ENSGT00530000063698.b	ENSGT00940000156213	ENSGT00940000156592	ENSGT00940000157151	ENSGT00940000159638	ENSGT00940000153446.a.b
Boreoeutheria	ANCESTRAL SPECIES		ENSGT00940000163178	ENSGT00940000160073	ENSGT01000000214440.A.a.b.a #7	ENSGT00940000156115 #8	ENSGT00530000063770.c.a #9	ENSGT00390000010045 #10	ENSGT00950000183182.a.a #11	ENSGT01090000260093.b #12	ENSGT00950000182978.B #13	ENSGT01060000248589.D	ENSGT00390000012569.a #16	ENSGT00390000006264 #17	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #23	ENSGT00940000162094 #24	ENSGT00940000164873	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT01100000263839	ENSGT00940000156761	ENSGT00940000157669	ENSGT00940000157833	ENSGT00530000063698.b	ENSGT00940000156213	ENSGT00940000156592	ENSGT00940000157151	ENSGT00940000159638	ENSGT00940000153446.a.b
Euarchontoglires	ANCESTRAL SPECIES		ENSGT00940000163178	ENSGT00940000160073	ENSGT01000000214440.A.a.b.a #7	ENSGT00940000156115 #8	ENSGT00530000063770.c.a #9	ENSGT00390000010045 #10	ENSGT00950000183182.a.a #11	ENSGT01090000260093.b #12	ENSGT00950000182978.B #13	ENSGT01060000248589.D	ENSGT00390000012569.a #16	ENSGT00390000006264 #17	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #23	ENSGT00940000162094 #24	ENSGT00940000164873	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761	ENSGT00940000157669	ENSGT00940000157833	ENSGT00530000063698.b	ENSGT00940000156213	ENSGT00940000156592	ENSGT00940000157151	ENSGT00940000159638	ENSGT00940000153446.a.b	ENSGT00940000160209
Primates	ANCESTRAL SPECIES	4	ENSGT00940000163178	ENSGT00940000160073	ENSGT01000000214440.A.a.b.a #7	ENSGT00940000156115 #8	ENSGT00530000063770.c.a #9	ENSGT00390000010045 #10	ENSGT00950000183182.a.a #11	ENSGT01090000260093.b #12	ENSGT00950000182978.B #13	ENSGT01060000248589.D	ENSGT00390000012569.a #16	ENSGT00390000006264 #17	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #23	ENSGT00940000162094 #24	ENSGT00940000164873	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761	ENSGT00940000157669	ENSGT00940000157833	ENSGT00530000063698.b	ENSGT00940000156213	ENSGT00940000156592	ENSGT00940000157151	ENSGT00940000159638	ENSGT00940000153446.a.b	ENSGT00940000160209
Haplorrhini	ANCESTRAL SPECIES	1	ENSGT00940000163178	ENSGT00940000160073	ENSGT01000000214440.A.a.b.a #7	ENSGT00940000156115 #8	ENSGT00530000063770.c.a #9	ENSGT00390000010045 #10	ENSGT00950000183182.a.a #11	ENSGT01090000260093.b #12	ENSGT00950000182978.B #13	ENSGT01060000248589.D	ENSGT00390000012569.a #16	ENSGT00390000006264 #17	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #23	ENSGT00940000162094 #24	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761	ENSGT00940000157669	ENSGT00940000157833	ENSGT00530000063698.b	ENSGT00940000156213	ENSGT00940000156592	ENSGT00940000157151	ENSGT00940000159638	ENSGT00940000153446.a.b	ENSGT00940000160209	ENSGT00940000158079
Simiiformes	ANCESTRAL SPECIES	3	ENSGT00940000160073	ENSGT01000000214440.A.a.b.a #7	ENSGT00940000156115 #8	ENSGT00530000063770.c.a #9	ENSGT00390000010045.g.b #10	ENSGT00950000183182.a.a #11	ENSGT01090000260093.b #12	ENSGT00950000182978.B #13	ENSGT01060000248589.D	ENSGT00390000012569.a.fb.b.a ##16	ENSGT00390000012569.a.fb.b.b.a #16	ENSGT00390000006264 #17	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #23	ENSGT00940000162094 #24	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761	ENSGT00940000157669	ENSGT00940000157833	ENSGT00530000063698.b	ENSGT00940000156213	ENSGT00940000156592	ENSGT00940000157151	ENSGT00940000159638	ENSGT00940000153446.a.b	ENSGT00940000160209	ENSGT00910000147267
Catarrhini	ANCESTRAL SPECIES	3	ENSGT01000000214440.A.a.b.a #7	ENSGT00940000156115 #8	ENSGT00530000063770.c.a #9	ENSGT00390000010045.g.b #10	ENSGT00950000183182.a.a #11	ENSGT01090000260093.b #12	ENSGT00950000182978.B #13	ENSGT00940000154861.d #14	ENSGT01060000248589.D	ENSGT00390000012569.a.fb.b.a ##16	ENSGT00390000012569.a.fb.b.b.a #16	ENSGT00390000006264 #17	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #23	ENSGT00940000162094 #24	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761	ENSGT00940000157669	ENSGT00940000157833	ENSGT00530000063698.b	ENSGT00940000156213	ENSGT00940000156592	ENSGT00940000157151	ENSGT00940000159638	ENSGT00940000153446.a.b	ENSGT00940000160209	ENSGT00910000147267
Cercopithecidae	ANCESTRAL SPECIES	2	ENSGT01000000214440.A.a.b.a #7	ENSGT00940000156115 #8	ENSGT00530000063770.c.a #9	ENSGT00390000010045.g.b #10	ENSGT00950000183182.a.a #11	ENSGT01090000260093.b #12	ENSGT00950000182978.B #13	ENSGT00940000154861.d #14	ENSGT01060000248589.D	ENSGT00390000012569.a.fb.b.b.a.b ##16	ENSGT00390000012569.a.fb.b.b.a.a #16	ENSGT00390000006264 #17	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #23	ENSGT00940000162094 #24	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761	ENSGT00940000157669	ENSGT00940000157833	ENSGT00530000063698.b	ENSGT00940000156213	ENSGT00940000156592	ENSGT00940000157151	ENSGT00940000159638	ENSGT00940000153446.a.b	ENSGT00940000160209	ENSGT00910000147267
Rhinopithecus	ANCESTRAL SPECIES	82	ENSGT00940000160073	ENSGT01000000214440.A.a.b.a #7	ENSGT00940000156115 #8	ENSGT00530000063770.c.a #9	ENSGT00390000010045.g.b #10	ENSGT00950000183182.a.a #11	ENSGT01090000260093.b #12	ENSGT00950000182978.B #13	ENSGT00940000154861.d #14	ENSGT01060000248589.D	ENSGT00390000012569.a.fb.b.b.a.a #16	ENSGT00390000006264 #17	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #23	ENSGT00940000162094 #24	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761	ENSGT00940000157669	ENSGT00940000157833	ENSGT00530000063698.b	ENSGT00940000156213	ENSGT00940000156592	ENSGT00940000157151
Black snub-nosed monkey	MODERN SPECIES	1846	STX12 (ENSRBIG00000036484) #7	PPP1R8 (ENSRBIG00000012191) #8	THEMIS2 (ENSRBIG00000012387) #9	RPA2 (ENSRBIG00000036230) #10	SMPDL3B (ENSRBIG00000039924) #11	XKR8 (ENSRBIG00000041388) #12	EYA3 (ENSRBIG00000038991) #13	ENSRBIG00000036065 #14	ENSRBIG00000003411 #15	ENSRBIG00000035627 #16	ATP5IF1 (ENSRBIG00000044587) #17	SESN2 (ENSRBIG00000028417) #18	MED18 (ENSRBIG00000032607) #19	ENSRBIG00000029501 #20	PHACTR4 (ENSRBIG00000017683) #21	RCC1 (ENSRBIG00000031101) #22	TRNAU1AP (ENSRBIG00000029083) #23	RAB42 (ENSRBIG00000033359) #24	TAF12 (ENSRBIG00000006334) #25	GMEB1 (ENSRBIG00000001692) #26
Golden snub-nosed monkey	MODERN SPECIES	2213	STX12 (ENSRROG00000031145) #7	PPP1R8 (ENSRROG00000041525) #8	THEMIS2 (ENSRROG00000024691) #9	RPA2 (ENSRROG00000040865) #10	SMPDL3B (ENSRROG00000035411) #11	XKR8 (ENSRROG00000034100) #12	EYA3 (ENSRROG00000036974) #13	ENSRROG00000030937 #14	PTAFR (ENSRROG00000003323)	ENSRROG00000013306 #15	ENSRROG00000045532 #16	ATP5IF1 (ENSRROG00000036303) #17	SESN2 (ENSRROG00000045413) #18	MED18 (ENSRROG00000036453) #19	PHACTR4 (ENSRROG00000041295) #21	RCC1 (ENSRROG00000042995) #22	TRNAU1AP (ENSRROG00000029128) #23	RAB42 (ENSRROG00000031599) #24	TAF12 (ENSRROG00000026844) #25	GMEB1 (ENSRROG00000034775) #26	YTHDF2 (ENSRROG00000038863)	OPRD1 (ENSRROG00000029540)	ENSRROG00000035486	EPB41 (ENSRROG00000043332)	TMEM200B (ENSRROG00000006582)	SRSF4 (ENSRROG00000029463)	MECR (ENSRROG00000042945)	PTPRU (ENSRROG00000033586)
Cercopithecinae	ANCESTRAL SPECIES		ENSGT00940000160073	ENSGT01000000214440.A.a.b.a #7	ENSGT00940000156115 #8	ENSGT00530000063770.c.a #9	ENSGT00390000010045.g.b #10	ENSGT00950000183182.a.a #11	ENSGT01090000260093.b #12	ENSGT00950000182978.B #13	ENSGT00940000154861.d #14	ENSGT01060000248589.D	ENSGT00390000012569.a.fb.b.b.a.a #16	ENSGT00390000006264.j #17	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #23	ENSGT00940000162094 #24	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761	ENSGT00940000157669	ENSGT00940000157833	ENSGT00530000063698.b	ENSGT00940000156213	ENSGT00940000156592	ENSGT00940000157151	ENSGT00940000159638	ENSGT00940000153446.a.b	ENSGT00940000160209	ENSGT00910000147267
Vervet Monkey	MODERN SPECIES	12	IFI6 (ENSCSAG00000000997)	FAM76A (ENSCSAG00000000999)	STX12 (ENSCSAG00000001000) #7	PPP1R8 (ENSCSAG00000001002) #8	THEMIS2 (ENSCSAG00000001003) #9	RPA2 (ENSCSAG00000001004) #10	XKR8 (ENSCSAG00000001005) #12	EYA3 (ENSCSAG00000001006) #13	PTAFR (ENSCSAG00000000653)	ENSCSAG00000000654 ##15	ENSCSAG00000001007 ##16	ENSCSAG00000001008 #17	SESN2 (ENSCSAG00000001009) #18	MED18 (ENSCSAG00000001010) #19	PHACTR4 (ENSCSAG00000001011) #21	RCC1 (ENSCSAG00000001012) #22	TRNAU1AP (ENSCSAG00000001014) #23	RAB42 (ENSCSAG00000001015) #24	TAF12 (ENSCSAG00000001016) #25	GMEB1 (ENSCSAG00000001017) #26	YTHDF2 (ENSCSAG00000001018)	ENSCSAG00000001019	OPRD1 (ENSCSAG00000001020)	EPB41 (ENSCSAG00000001021)	TMEM200B (ENSCSAG00000000655)	SRSF4 (ENSCSAG00000001022)	MECR (ENSCSAG00000001023)	PTPRU (ENSCSAG00000001024)	MATN1 (ENSCSAG00000001025)	LAPTM5 (ENSCSAG00000001026)	SDC3 (ENSCSAG00000001027)
Cercopithecinae_a	ANCESTRAL SPECIES		ENSGT00940000160073	ENSGT01000000214440.A.a.b.a #7	ENSGT00940000156115 #8	ENSGT00530000063770.c.a #9	ENSGT00390000010045.g.b #10	ENSGT00950000183182.a.a #11	ENSGT01090000260093.b #12	ENSGT00950000182978.B #13	ENSGT00940000154861.d #14	ENSGT01060000248589.D	ENSGT00390000012569.a.fb.b.b.a.b ##16	ENSGT00390000006264.j #17	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #23	ENSGT00390000018898.`b.b	ENSGT00940000162094 #24	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761	ENSGT00940000157669	ENSGT00940000157833	ENSGT00530000063698.b	ENSGT00940000156213	ENSGT00940000156592	ENSGT00940000157151	ENSGT00940000159638	ENSGT00940000153446.a.b	ENSGT00940000160209
Cercopithecinae_b	ANCESTRAL SPECIES	1	ENSGT01000000214440.A.a.b.a #7	ENSGT00940000156115 #8	ENSGT00530000063770.c.a #9	ENSGT00390000010045.g.b #10	ENSGT00950000183182.a.a #11	ENSGT01090000260093.b #12	ENSGT00950000182978.B #13	ENSGT00940000154861.d #14	ENSGT01060000248589.D	ENSGT00390000012569.a.fb.b.b.a.b ##16	ENSGT00390000012569.a.fb.b.b.a.a #16	ENSGT00390000006264.j #17	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #23	ENSGT00390000018898.`b.b	ENSGT00940000162094 #24	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761	ENSGT00940000157669	ENSGT00940000157833	ENSGT00530000063698.b	ENSGT00940000156213	ENSGT00940000156592	ENSGT00940000157151	ENSGT00940000159638	ENSGT00940000153446.a.b	ENSGT00940000160209
Olive baboon	DUPLICATION
Olive baboon	MODERN SPECIES		FAM76A (ENSPANG00000000247)	STX12 (ENSPANG00000007130) #7	PPP1R8 (ENSPANG00000043070) #8	THEMIS2 (ENSPANG00000005205) #9	RPA2 (ENSPANG00000017991) #10	SMPDL3B (ENSPANG00000007129) #11	XKR8 (ENSPANG00000007916) #12	EYA3 (ENSPANG00000016511) #13	ENSPANG00000042576	PTAFR (ENSPANG00000006117)	ENSPANG00000012833 #16	ATP5IF1 (ENSPANG00000018327) #17	SESN2 (ENSPANG00000012598) #18	MED18 (ENSPANG00000006507) #19	PHACTR4 (ENSPANG00000022866) #21	ENSPANG00000033403 #22	TRNAU1AP (ENSPANG00000016019) #23	RAB42 (ENSPANG00000015797) #24	TAF12 (ENSPANG00000022039) #25	GMEB1 (ENSPANG00000018743) #26	YTHDF2 (ENSPANG00000006550)	EPB41 (ENSPANG00000000507)	TMEM200B (ENSPANG00000017831)	SRSF4 (ENSPANG00000021937)	MECR (ENSPANG00000007687)	PTPRU (ENSPANG00000011555)	ENSPANG00000038388	MATN1 (ENSPANG00000016577)	LAPTM5 (ENSPANG00000016018)	SDC3 (ENSPANG00000008025)	PUM1 (ENSPANG00000016338)
Olive baboon	MODERN SPECIES	2	ENSPANG00000040344	ENSPANG00000000253	ENSPANG00000047502	ZFAND4 (ENSPANG00000022669)	MARCHF8 (ENSPANG00000022668)	ALOX5 (ENSPANG00000022667)	PARG (ENSPANG00000022653)	TIMM23 (ENSPANG00000022652)	NCOA4 (ENSPANG00000022656)	MSMB (ENSPANG00000022672)	ANTXRL (ENSPANG00000022616)	ENSPANG00000043475	RBP3 (ENSPANG00000022632)	GDF2 (ENSPANG00000030559)	GDF10 (ENSPANG00000022630)	ENSPANG00000043437 #22	PTPN20 (ENSPANG00000022629)	ENSPANG00000022628	MAPK8 (ENSPANG00000022627)	ARHGAP22 (ENSPANG00000022626)	WDFY4 (ENSPANG00000022623)	LRRC18 (ENSPANG00000022625)	VSTM4 (ENSPANG00000022622)	C10orf71 (ENSPANG00000041901)	DRGX (ENSPANG00000035370)	ERCC6 (ENSPANG00000022650)	SLC18A3 (ENSPANG00000011656)	CHAT (ENSPANG00000022655)	C10orf53 (ENSPANG00000038571)	OGDHL (ENSPANG00000022654)	ENSPANG00000044690
Cercopithecinae_d	ANCESTRAL SPECIES	1	ENSGT00940000160073	ENSGT01000000214440.A.a.b.a #7	ENSGT00940000156115 #8	ENSGT00530000063770.c.a #9	ENSGT00390000010045.g.b #10	ENSGT00950000183182.a.a #11	ENSGT01090000260093.b #12	ENSGT00950000182978.B #13	ENSGT00940000154861.d #14	ENSGT01060000248589.D	ENSGT00390000012569.a.fb.b.b.a.b ##16	ENSGT00390000006264.j #17	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #23	ENSGT00390000018898.`b.b	ENSGT00940000162094 #24	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761	ENSGT00940000157669	ENSGT00940000157833	ENSGT00530000063698.b	ENSGT00940000156213	ENSGT00940000156592	ENSGT00940000157151	ENSGT00940000159638	ENSGT00940000153446.a.b	ENSGT00940000160209
Drill	MODERN SPECIES	832	STX12 (ENSMLEG00000038548) #7	PPP1R8 (ENSMLEG00000041495) #8	THEMIS2 (ENSMLEG00000040682) #9	RPA2 (ENSMLEG00000031567) #10	SMPDL3B (ENSMLEG00000039800) #11	XKR8 (ENSMLEG00000043403) #12	EYA3 (ENSMLEG00000042664) #13	ENSMLEG00000033540 #14	PTAFR (ENSMLEG00000000550)	ENSMLEG00000003164 ##16	ENSMLEG00000027639 #15	ATP5IF1 (ENSMLEG00000031790) #17	SESN2 (ENSMLEG00000036334) #18	MED18 (ENSMLEG00000030739) #19	PHACTR4 (ENSMLEG00000030370) #21	RCC1 (ENSMLEG00000032267) #22	TRNAU1AP (ENSMLEG00000015649) #23	ENSMLEG00000044462	RAB42 (ENSMLEG00000035485) #24	TAF12 (ENSMLEG00000029589) #25	GMEB1 (ENSMLEG00000018636) #26	YTHDF2 (ENSMLEG00000030371)	OPRD1 (ENSMLEG00000031448)	EPB41 (ENSMLEG00000018623)	SRSF4 (ENSMLEG00000031619)	MECR (ENSMLEG00000028607)	PTPRU (ENSMLEG00000031671)
Sooty mangabey	MODERN SPECIES	227	FAM76A (ENSCATG00000033886)	STX12 (ENSCATG00000032583) #7	PPP1R8 (ENSCATG00000032635) #8	THEMIS2 (ENSCATG00000031969) #9	RPA2 (ENSCATG00000044566) #10	SMPDL3B (ENSCATG00000017005) #11	XKR8 (ENSCATG00000015702) #12	EYA3 (ENSCATG00000027843) #13	ENSCATG00000017621 #14	PTAFR (ENSCATG00000005828)	ENSCATG00000033266 ##16	ATP5IF1 (ENSCATG00000044245) #17	SESN2 (ENSCATG00000016723) #18	MED18 (ENSCATG00000033221) #19	PHACTR4 (ENSCATG00000015008) #21	RCC1 (ENSCATG00000033576) #22	ENSCATG00000033176	TRNAU1AP (ENSCATG00000044617) #23	ENSCATG00000004302 #24	TAF12 (ENSCATG00000043940) #25	GMEB1 (ENSCATG00000015607) #26	YTHDF2 (ENSCATG00000044332)	OPRD1 (ENSCATG00000027331)	ENSCATG00000006297	EPB41 (ENSCATG00000028944)	TMEM200B (ENSCATG00000005039)	SRSF4 (ENSCATG00000031440)	MECR (ENSCATG00000043979)	PTPRU (ENSCATG00000036995)	MATN1 (ENSCATG00000044560)	LAPTM5 (ENSCATG00000043956)
Macaca	ANCESTRAL SPECIES		ENSGT00940000160073	ENSGT01000000214440.A.a.b.a #7	ENSGT00940000156115 #8	ENSGT00530000063770.c.a #9	ENSGT00390000010045.g.b #10	ENSGT00950000183182.a.a #11	ENSGT01090000260093.b #12	ENSGT00950000182978.B #13	ENSGT00940000154861.d #14	ENSGT01060000248589.D	ENSGT00390000012569.a.fb.b.b.a.a #16	ENSGT00390000006264.i.a #17	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #23	ENSGT00390000018898.`b.b	ENSGT00940000162094 #24	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761	ENSGT00940000157669	ENSGT00390000010721.a.a.b	ENSGT00940000157833	ENSGT00530000063698.b	ENSGT00940000156213	ENSGT00940000156592	ENSGT00940000157151	ENSGT00940000159638	ENSGT00940000153446.a.b
Macaca_a	ANCESTRAL SPECIES		ENSGT00940000163178	ENSGT00940000160073	ENSGT01000000214440.A.a.b.a #7	ENSGT00940000156115 #8	ENSGT00530000063770.c.a #9	ENSGT00390000010045.g.b #10	ENSGT00950000183182.a.a #11	ENSGT01090000260093.b #12	ENSGT00950000182978.B #13	ENSGT01060000248589.D	ENSGT00390000012569.a.fb.b.b.a.a #16	ENSGT00390000006264.i.a #17	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #23	ENSGT00940000162094 #24	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761	ENSGT00940000157669	ENSGT00390000010721.a.a.b	ENSGT00940000157833	ENSGT00530000063698.b	ENSGT00940000156213	ENSGT00940000156592	ENSGT00940000157151	ENSGT01100000263539.b.a.a.a.a.a.b.b.a.a.b.a.b.a.b.a.b.a.a.a	ENSGT00940000159638	ENSGT00940000153446.a.b
Crab-eating macaque	MODERN SPECIES		FAM76A (ENSMFAG00000051312)	PPP1R8 (ENSMFAG00000001557) #8	THEMIS2 (ENSMFAG00000030730) #9	RPA2 (ENSMFAG00000022522) #10	SMPDL3B (ENSMFAG00000044059) #11	XKR8 (ENSMFAG00000037317) #12	STX12 (ENSMFAG00000003645) #7	EYA3 (ENSMFAG00000045224) #13	PTAFR (ENSMFAG00000063827)	ENSMFAG00000040941	ATP5IF1 (ENSMFAG00000037657) #17	SESN2 (ENSMFAG00000043063) #18	ENSMFAG00000048953	ENSMFAG00000053009	PHACTR4 (ENSMFAG00000040093) #21	RCC1 (ENSMFAG00000039145) #22	ENSMFAG00000064996	TRNAU1AP (ENSMFAG00000043751) #23	RAB42 (ENSMFAG00000060532) #24	TAF12 (ENSMFAG00000041370) #25	GMEB1 (ENSMFAG00000031717) #26	YTHDF2 (ENSMFAG00000026128)	OPRD1 (ENSMFAG00000034678)	ENSMFAG00000003794	EPB41 (ENSMFAG00000046344)	ENSMFAG00000062308	TMEM200B (ENSMFAG00000038738)	SRSF4 (ENSMFAG00000041784)	MECR (ENSMFAG00000000155)	PTPRU (ENSMFAG00000001608)	ENSMFAG00000063061
Rhesus	MODERN SPECIES		ENSMMUG00000057915	STX12 (ENSMMUG00000012252) #8	ENSMMUG00000056206	THEMIS2 (ENSMMUG00000018170) #9	RPA2 (ENSMMUG00000018172) #10	ENSMMUG00000018175 #11	XKR8 (ENSMMUG00000054886) #12	EYA3 (ENSMMUG00000012965) #13	ENSMMUG00000060250	PTAFR (ENSMMUG00000063261)	DNAJC8 (ENSMMUG00000017080) #16	ATP5IF1 (ENSMMUG00000018678) #17	SESN2 (ENSMMUG00000019993) #18	MED18 (ENSMMUG00000010353) #19	PHACTR4 (ENSMMUG00000019216) #21	RCC1 (ENSMMUG00000018338) #22	TRNAU1AP (ENSMMUG00000006561) #23	RAB42 (ENSMMUG00000006559) #24	TAF12 (ENSMMUG00000050311) #25	GMEB1 (ENSMMUG00000011390) #26	ENSMMUG00000055489	YTHDF2 (ENSMMUG00000011391)	EPB41 (ENSMMUG00000011377)	TMEM200B (ENSMMUG00000011378)	SRSF4 (ENSMMUG00000007110)	MECR (ENSMMUG00000015659)	PTPRU (ENSMMUG00000015661)	ENSMMUG00000057173	ENSMMUG00000051737	MATN1 (ENSMMUG00000054963)	LAPTM5 (ENSMMUG00000008744)
Pig-tailed macaque	DUPLICATION
Pig-tailed macaque	MODERN SPECIES	129	ENSMNEG00000042478	ENSMNEG00000041640	ENSMNEG00000041397	SHLD2 (ENSMNEG00000035685)	ENSMNEG00000030901	GPRIN2 (ENSMNEG00000027130)	ENSMNEG00000024895	ENSMNEG00000015982	ENSMNEG00000034700	ENSMNEG00000035244	ENSMNEG00000038712	ENSMNEG00000032122	RBP3 (ENSMNEG00000040793)	GDF2 (ENSMNEG00000039147)	GDF10 (ENSMNEG00000037022)	ENSMNEG00000042349 #22	PTPN20 (ENSMNEG00000035527)	FRMPD2 (ENSMNEG00000031211)	MAPK8 (ENSMNEG00000030681)	ENSMNEG00000023358	ENSMNEG00000023123	ARHGAP22 (ENSMNEG00000040424)	LRRC18 (ENSMNEG00000033761)	WDFY4 (ENSMNEG00000001096)	VSTM4 (ENSMNEG00000032340)	FAM170B (ENSMNEG00000029499)	TMEM273 (ENSMNEG00000034199)	DRGX (ENSMNEG00000043532)	ERCC6 (ENSMNEG00000043701)	SLC18A3 (ENSMNEG00000015760)	CHAT (ENSMNEG00000042067)
Pig-tailed macaque	MODERN SPECIES	217	ENSMNEG00000041438	STX12 (ENSMNEG00000005186) #7	PPP1R8 (ENSMNEG00000030784) #8	THEMIS2 (ENSMNEG00000036095) #9	RPA2 (ENSMNEG00000032153) #10	SMPDL3B (ENSMNEG00000040406) #11	XKR8 (ENSMNEG00000037672) #12	EYA3 (ENSMNEG00000030436) #13	ENSMNEG00000043243 #14	PTAFR (ENSMNEG00000023879)	ENSMNEG00000011552 ##16	ATP5IF1 (ENSMNEG00000020230) #17	SESN2 (ENSMNEG00000040155) #18	MED18 (ENSMNEG00000040104) #19	PHACTR4 (ENSMNEG00000033673) #21	ENSMNEG00000005673 #22	TRNAU1AP (ENSMNEG00000044201) #23	ENSMNEG00000029703	RAB42 (ENSMNEG00000032871) #24	TAF12 (ENSMNEG00000032703) #25	GMEB1 (ENSMNEG00000035670) #26	YTHDF2 (ENSMNEG00000041161)	OPRD1 (ENSMNEG00000039650)	ENSMNEG00000002799	EPB41 (ENSMNEG00000029961)	TMEM200B (ENSMNEG00000025032)	SRSF4 (ENSMNEG00000034931)	MECR (ENSMNEG00000042809)	PTPRU (ENSMNEG00000044104)	MATN1 (ENSMNEG00000031564)	LAPTM5 (ENSMNEG00000012765)
Hominoidea	ANCESTRAL SPECIES	3	ENSGT01000000214440.A.a.b.a #7	ENSGT00940000156115 #8	ENSGT00550000076274	ENSGT00530000063770.c.a #9	ENSGT00390000010045.g.b #10	ENSGT00950000183182.a.a #11	ENSGT01090000260093.b #12	ENSGT00950000182978.B #13	ENSGT00940000154861.d #14	ENSGT01060000248589.D	ENSGT00390000012569.a.fb.b.a.a ##16	ENSGT00390000006264 #17	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #23	ENSGT00940000162094 #24	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761	ENSGT00940000157669	ENSGT00940000157833	ENSGT00530000063698.b	ENSGT00940000156213	ENSGT00940000156592	ENSGT00940000157151	ENSGT00940000159638	ENSGT00940000153446.a.b	ENSGT00940000160209	ENSGT00940000158079
Gibbon	MODERN SPECIES	16	PPP1R8 (ENSNLEG00000009676) #8	ENSNLEG00000009695	ENSNLEG00000009697 #9	RPA2 (ENSNLEG00000009702) #10	SMPDL3B (ENSNLEG00000009709) #11	XKR8 (ENSNLEG00000009722) #12	EYA3 (ENSNLEG00000009724) #13	PTAFR (ENSNLEG00000009760)	DNAJC8 (ENSNLEG00000009762) ##16	ATP5IF1 (ENSNLEG00000032433) #17	SESN2 (ENSNLEG00000009780) #18	MED18 (ENSNLEG00000009789) #19	ENSNLEG00000009792 #21	ENSNLEG00000034272	ENSNLEG00000029704	RCC1 (ENSNLEG00000009802) #22	TRNAU1AP (ENSNLEG00000009822) #23	ENSNLEG00000018583 #24	ENSNLEG00000009827 #25	GMEB1 (ENSNLEG00000009837) #26	YTHDF2 (ENSNLEG00000009856)	ENSNLEG00000009864	EPB41 (ENSNLEG00000009867)	SRSF4 (ENSNLEG00000009916)	ENSNLEG00000009932	PTPRU (ENSNLEG00000031816)
Hominidae	ANCESTRAL SPECIES	3	ENSGT01000000214440.A.a.b.a #7	ENSGT00940000156115 #8	ENSGT00550000076274	ENSGT00530000063770.c.a #9	ENSGT00390000010045.g.b #10	ENSGT00950000183182.a.a #11	ENSGT01090000260093.b #12	ENSGT00950000182978.B #13	ENSGT00940000154861.d #14	ENSGT01060000248589.D	ENSGT00390000012569.a.fb.b.a.a ##16	ENSGT00390000006264 #17	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #23	ENSGT00940000162094 #24	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761	ENSGT00940000157669	ENSGT00940000157833	ENSGT00530000063698.b	ENSGT00940000156213	ENSGT00940000156592	ENSGT00940000157151	ENSGT00940000159638	ENSGT00940000153446.a.b	ENSGT00940000160209	ENSGT00940000158079
Orangutan	MODERN SPECIES		FAM76A (ENSPPYG00000001656)	STX12 (ENSPPYG00000001655) #7	ENSPPYG00000001653	PPP1R8 (ENSPPYG00000001654) #8	THEMIS2 (ENSPPYG00000001652) #9	RPA2 (ENSPPYG00000001651) #10	SMPDL3B (ENSPPYG00000001650) #11	XKR8 (ENSPPYG00000039433) #12	EYA3 (ENSPPYG00000001648) #13	PTAFR (ENSPPYG00000001647)	ENSPPYG00000025833 ##16	ATP5IF1 (ENSPPYG00000001644) #17	SESN2 (ENSPPYG00000001643) #18	MED18 (ENSPPYG00000001642) #19	PHACTR4 (ENSPPYG00000001641) #21	RCC1 (ENSPPYG00000001640) #22	TRNAU1AP (ENSPPYG00000038044) #23	RAB42 (ENSPPYG00000034855) #24	TAF12 (ENSPPYG00000001636) #25	GMEB1 (ENSPPYG00000001635) #26	YTHDF2 (ENSPPYG00000001634)	OPRD1 (ENSPPYG00000001633)	EPB41 (ENSPPYG00000001631)	TMEM200B (ENSPPYG00000001630)	SRSF4 (ENSPPYG00000001629)	ENSPPYG00000001628	ENSPPYG00000041302	PTPRU (ENSPPYG00000001627)	MATN1 (ENSPPYG00000001625)	LAPTM5 (ENSPPYG00000001624)	SDC3 (ENSPPYG00000001623)
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	3	ENSGT00940000156115 #8	ENSGT00550000076274	ENSGT00530000063770.c.a #9	ENSGT00390000010045.g.b #10	ENSGT00950000183182.a.a #11	ENSGT01090000260093.b #12	ENSGT00950000182978.B #13	ENSGT00940000154861.d #14	ENSGT01060000248589.D	ENSGT00390000012569.a.fb.b.a.a ##16	ENSGT00390000006264 #17	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00940000165187	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #23	ENSGT00940000162094.a #24	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761	ENSGT00940000157669	ENSGT00940000157833	ENSGT00530000063698.b	ENSGT00940000156213	ENSGT00940000156592	ENSGT00940000157151	ENSGT00940000159638	ENSGT00940000153446.a.b	ENSGT00940000160209	ENSGT00940000158079
Homo/Pan group	ANCESTRAL SPECIES	4	ENSGT00940000156115 #8	ENSGT00550000076274	ENSGT00530000063770.c.a #9	ENSGT00390000010045.g.b #10	ENSGT00950000183182.a.a #11	ENSGT01090000260093.b #12	ENSGT00950000182978.B #13	ENSGT00940000154861.d #14	ENSGT01060000248589.D	ENSGT00390000012569.a.fb.b.a.a ##16	ENSGT00390000006264 #17	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00940000165187	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #23	ENSGT00940000162094.a #24	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761	ENSGT00940000157669	ENSGT00940000157833	ENSGT00530000063698.b	ENSGT00940000156213	ENSGT00940000156592	ENSGT00940000157151	ENSGT00940000159638	ENSGT00940000153446.a.b	ENSGT00940000160209	ENSGT00940000158079
Pan	ANCESTRAL SPECIES		ENSGT00940000156115 #8	ENSGT00550000076274	ENSGT00530000063770.c.a #9	ENSGT00390000010045.g.b #10	ENSGT00950000183182.a.a #11	ENSGT01090000260093.b #12	ENSGT00950000182978.B #13	ENSGT00940000154861.d #14	ENSGT01060000248589.D	ENSGT00390000012569.a.fb.b.a.a ##16	ENSGT00390000006264 #17	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00940000165187	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #23	ENSGT00940000162094.a #24	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761	ENSGT00940000157669	ENSGT00940000157833	ENSGT00530000063698.b	ENSGT00940000156213	ENSGT00940000156592	ENSGT00940000157151	ENSGT00940000159638	ENSGT00940000153446.a.b	ENSGT00940000160209	ENSGT00940000158079
Chimpanzee	MODERN SPECIES		PPP1R8 (ENSPTRG00000000417) #8	ENSPTRG00000052043	THEMIS2 (ENSPTRG00000000419) #9	RPA2 (ENSPTRG00000000420) #10	SMPDL3B (ENSPTRG00000000421) #11	XKR8 (ENSPTRG00000000422) #12	EYA3 (ENSPTRG00000000423) #13	ENSPTRG00000044631 #14	PTAFR (ENSPTRG00000000424)	DNAJC8 (ENSPTRG00000000426) ##16	ATP5IF1 (ENSPTRG00000000428) #17	SESN2 (ENSPTRG00000000429) #18	MED18 (ENSPTRG00000000431) #19	PHACTR4 (ENSPTRG00000030718) #21	ENSPTRG00000047179	RCC1 (ENSPTRG00000000432) #22	TRNAU1AP (ENSPTRG00000000434) #23	ENSPTRG00000045612	RAB42 (ENSPTRG00000000436) #24	TAF12 (ENSPTRG00000000437) #25	GMEB1 (ENSPTRG00000000438) #26	YTHDF2 (ENSPTRG00000000439)	OPRD1 (ENSPTRG00000000440)	EPB41 (ENSPTRG00000000442)	TMEM200B (ENSPTRG00000000444)	SRSF4 (ENSPTRG00000000445)	MECR (ENSPTRG00000000446)	PTPRU (ENSPTRG00000000447)	MATN1 (ENSPTRG00000000449)	LAPTM5 (ENSPTRG00000000450)	SDC3 (ENSPTRG00000000451)
Bonobo	MODERN SPECIES		PPP1R8 (ENSPPAG00000036845) #8	ENSPPAG00000004249	THEMIS2 (ENSPPAG00000031100) #9	RPA2 (ENSPPAG00000021088) #10	SMPDL3B (ENSPPAG00000033356) #11	XKR8 (ENSPPAG00000032312) #12	EYA3 (ENSPPAG00000038235) #13	ENSPPAG00000041305 #14	PTAFR (ENSPPAG00000024566)	DNAJC8 (ENSPPAG00000032103) ##16	ATP5IF1 (ENSPPAG00000043083) #17	SESN2 (ENSPPAG00000036650) #18	MED18 (ENSPPAG00000033816) #19	PHACTR4 (ENSPPAG00000033477) #21	ENSPPAG00000027675	RCC1 (ENSPPAG00000030910) #22	TRNAU1AP (ENSPPAG00000033927) #23	RAB42 (ENSPPAG00000043954) #24	ENSPPAG00000027453 #25	GMEB1 (ENSPPAG00000038756) #26	YTHDF2 (ENSPPAG00000032722)	OPRD1 (ENSPPAG00000041756)	EPB41 (ENSPPAG00000038163)	SRSF4 (ENSPPAG00000028357)	MECR (ENSPPAG00000038550)	PTPRU (ENSPPAG00000001262)	ENSPPAG00000022035	MATN1 (ENSPPAG00000003456)	LAPTM5 (ENSPPAG00000030829)	SDC3 (ENSPPAG00000032002)	PUM1 (ENSPPAG00000044003)
Human	MODERN SPECIES		IFI6 (ENSG00000126709)	FAM76A (ENSG00000009780)	STX12 (ENSG00000117758) #7	PPP1R8 (ENSG00000117751) #8	THEMIS2 (ENSG00000130775) #9	RPA2 (ENSG00000117748) #10	SMPDL3B (ENSG00000130768) #11	XKR8 (ENSG00000158156) #12	EYA3 (ENSG00000158161) #13	PTAFR (ENSG00000169403)	DNAJC8 (ENSG00000126698) ##16	ATP5IF1 (ENSG00000130770) #17	SESN2 (ENSG00000130766) #18	MED18 (ENSG00000130772) #19	PHACTR4 (ENSG00000204138) #21	RCC1 (ENSG00000180198) #22	TRNAU1AP (ENSG00000180098) #23	TAF12 (ENSG00000120656) #25	RAB42 (ENSG00000188060) #24	GMEB1 (ENSG00000162419) #26	YTHDF2 (ENSG00000198492)	OPRD1 (ENSG00000116329)	EPB41 (ENSG00000159023)	TMEM200B (ENSG00000253304)	SRSF4 (ENSG00000116350)	MECR (ENSG00000116353)	PTPRU (ENSG00000060656)	ENSG00000289710	MATN1 (ENSG00000162510)	LAPTM5 (ENSG00000162511)	SDC3 (ENSG00000162512)
Gorilla	MODERN SPECIES		ENSGGOG00000040440	THEMIS2 (ENSGGOG00000009217) #9	RPA2 (ENSGGOG00000015287) #10	SMPDL3B (ENSGGOG00000014912) #11	XKR8 (ENSGGOG00000014917) #12	EYA3 (ENSGGOG00000008544) #13	ENSGGOG00000023525	ENSGGOG00000043416 #14	PTAFR (ENSGGOG00000014295)	DNAJC8 (ENSGGOG00000000821) ##16	ATP5IF1 (ENSGGOG00000000822) #17	SESN2 (ENSGGOG00000014485) #18	MED18 (ENSGGOG00000007555) #19	PHACTR4 (ENSGGOG00000012455) #21	ENSGGOG00000038109	ENSGGOG00000007119 #22	TRNAU1AP (ENSGGOG00000003511) #23	RAB42 (ENSGGOG00000008561) #24	ENSGGOG00000008564 #25	GMEB1 (ENSGGOG00000009221) #26	YTHDF2 (ENSGGOG00000024069)	OPRD1 (ENSGGOG00000002157)	EPB41 (ENSGGOG00000004272)	TMEM200B (ENSGGOG00000036267)	SRSF4 (ENSGGOG00000002444)	ENSGGOG00000003122	PTPRU (ENSGGOG00000006305)	MATN1 (ENSGGOG00000007826)	LAPTM5 (ENSGGOG00000017026)	SDC3 (ENSGGOG00000027183)	PUM1 (ENSGGOG00000011983)
Platyrrhini	DUPLICATION
Platyrrhini	ANCESTRAL SPECIES		ENSGT00940000160073	ENSGT01000000214440.A.a.b.a #7	ENSGT00940000156115 #8	ENSGT00530000063770.c.a #9	ENSGT00390000010045.g.b.a #10	ENSGT00950000183182.a.a #11	ENSGT01090000260093.b #12	ENSGT00950000182978.B #13	ENSGT01060000248589.D	ENSGT00390000015229.p	ENSGT00390000012569.a.fb.a.b.a ##16	ENSGT00390000006264 #17	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00940000157582 #21	ENSGT00940000155543.e #22	ENSGT00940000155543.f #22	ENSGT00940000156139 #23	ENSGT00940000162094 #24	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761	ENSGT00940000157669	ENSGT00940000157833	ENSGT00530000063698.b	ENSGT00940000156213	ENSGT00940000156592	ENSGT00940000157151	ENSGT00940000159638	ENSGT00940000153446.a.b	ENSGT00940000160209
Cebidae	ANCESTRAL SPECIES	1	ENSGT00940000160073	ENSGT01000000214440.A.a.b.a #7	ENSGT00940000156115 #8	ENSGT00530000063770.c.a #9	ENSGT00390000010045.g.b.a #10	ENSGT00950000183182.a.a #11	ENSGT01090000260093.b #12	ENSGT00950000182978.B #13	ENSGT01060000248589.D	ENSGT00390000015229.p	ENSGT00390000012569.a.fb.a.b.a ##16	ENSGT00390000006264 #17	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00940000157582 #21	ENSGT00940000155543.e #22	ENSGT00940000155543.f #22	ENSGT00940000156139 #23	ENSGT00940000162094 #24	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761	ENSGT00940000157669	ENSGT00940000157833	ENSGT00940000156213	ENSGT00940000156592	ENSGT00940000157151	ENSGT00940000159638	ENSGT00940000153446.a.b	ENSGT00940000160209	ENSGT00910000147267
Cebidae_a	DUPLICATION
Cebidae_a	ANCESTRAL SPECIES																	ENSGT00940000155543.e.a #22
Capuchin	MODERN SPECIES	873																ENSCCAG00000036649 #22	ENSCCAG00000027335	SMPD4 (ENSCCAG00000003676)	ENSCCAG00000024585	TUBA3C (ENSCCAG00000026833)
Bolivian squirrel monkey	MODERN SPECIES	322																ENSSBOG00000029433 #22	ENSSBOG00000032232
Cebidae_a	ANCESTRAL SPECIES																	ENSGT00940000155543.e.b #22
Bolivian squirrel monkey	MODERN SPECIES	59	ATRIP (ENSSBOG00000019674)	TMA7 (ENSSBOG00000025835)	CCDC51 (ENSSBOG00000034836)	PLXNB1 (ENSSBOG00000020914)	FBXW12 (ENSSBOG00000023701)	SPINK8 (ENSSBOG00000027866)	NME6 (ENSSBOG00000021349)	ENSSBOG00000028662	CAMP (ENSSBOG00000034385)	CDC25A (ENSSBOG00000025104)	MAP4 (ENSSBOG00000033564)	DHX30 (ENSSBOG00000035810)	ENSSBOG00000020538	SMARCC1 (ENSSBOG00000034716)	CSPG5 (ENSSBOG00000030429)	ENSSBOG00000034659 #22	ELP6 (ENSSBOG00000009153)	SCAP (ENSSBOG00000027955)	PTPN23 (ENSSBOG00000003424)	KLHL18 (ENSSBOG00000027931)	KIF9 (ENSSBOG00000035834)	ENSSBOG00000009349	SETD2 (ENSSBOG00000018044)	NBEAL2 (ENSSBOG00000032401)	CCDC12 (ENSSBOG00000035443)	PTH1R (ENSSBOG00000025002)	MYL3 (ENSSBOG00000030319)	ENSSBOG00000028992	ENSSBOG00000024974	ENSSBOG00000028894	PRSS50 (ENSSBOG00000031754)
Marmoset	MODERN SPECIES	19	ENSCJAG00000077742	STX12 (ENSCJAG00000009378) #7	PPP1R8 (ENSCJAG00000009406) #8	ENSCJAG00000009445 #9	RPA2 (ENSCJAG00000009473) #10	SMPDL3B (ENSCJAG00000009490) #11	XKR8 (ENSCJAG00000009496) #12	EYA3 (ENSCJAG00000009498) #13	PTAFR (ENSCJAG00000022642)	ENSCJAG00000009556 ##16	ATP5IF1 (ENSCJAG00000048007) #17	SESN2 (ENSCJAG00000009602) #18	MED18 (ENSCJAG00000068482) #19	PHACTR4 (ENSCJAG00000009642) #21	ENSCJAG00000062507	RCC1 (ENSCJAG00000009686) #22	TRNAU1AP (ENSCJAG00000009717) #23	RAB42 (ENSCJAG00000009733) #24	TAF12 (ENSCJAG00000009742) #25	GMEB1 (ENSCJAG00000009754) #26	YTHDF2 (ENSCJAG00000009804)	OPRD1 (ENSCJAG00000009824)	EPB41 (ENSCJAG00000009831)	SRSF4 (ENSCJAG00000047192)	MECR (ENSCJAG00000009994)	PTPRU (ENSCJAG00000010031)	MATN1 (ENSCJAG00000005964)	LAPTM5 (ENSCJAG00000062185)	SDC3 (ENSCJAG00000085360)	ENSCJAG00000073130	PUM1 (ENSCJAG00000006035)
Mas night monkey	MODERN SPECIES	776	ENSANAG00000037952	MIOS (ENSANAG00000031901)	RPA3 (ENSANAG00000021050)	UMAD1 (ENSANAG00000035021)	GLCCI1 (ENSANAG00000022639)	ICA1 (ENSANAG00000037411)	NXPH1 (ENSANAG00000021516)	ENSANAG00000038257	PHF14 (ENSANAG00000037061)	THSD7A (ENSANAG00000022340)	TMEM106B (ENSANAG00000018667)	VWDE (ENSANAG00000019499)	ENSANAG00000000032	SCIN (ENSANAG00000029754)	ENSANAG00000031522	ENSANAG00000029590 #22	ENSANAG00000030559	ETV1 (ENSANAG00000036115)	ENSANAG00000022964	DGKB (ENSANAG00000033587)	AGMO (ENSANAG00000029663)	MEOX2 (ENSANAG00000026696)	CRPPA (ENSANAG00000034796)	SOSTDC1 (ENSANAG00000023489)	LRRC72 (ENSANAG00000032108)	ANKMY2 (ENSANAG00000031294)	BZW2 (ENSANAG00000004675)	TSPAN13 (ENSANAG00000032135)	AGR2 (ENSANAG00000034130)	AGR3 (ENSANAG00000035108)	AHR (ENSANAG00000030085)
Platyrrhini	ANCESTRAL SPECIES		ENSGT01000000214440.A.a.b.a #7	ENSGT00940000156115 #8	ENSGT00530000063770.c.a #9	ENSGT00390000010045.g.b.a #10	ENSGT00950000183182.a.a #11	ENSGT01090000260093.b #12	ENSGT00950000182978.B #13	ENSGT01060000248589.D	ENSGT00390000015229.p	ENSGT00390000012569.a.fb.a.b.a ##16	ENSGT00390000006264 #17	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00940000157582 #21	ENSGT00940000155543.e #22	ENSGT00940000155543.f #22	ENSGT00940000156139 #23	ENSGT00940000162094 #24	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761	ENSGT00940000157669	ENSGT00940000157833	ENSGT00530000063698.b	ENSGT00940000156213	ENSGT00940000156592	ENSGT00940000157151	ENSGT00940000159638	ENSGT00940000153446.a.b	ENSGT00940000160209	ENSGT00910000147267
Cebidae	ANCESTRAL SPECIES	1	ENSGT01000000214440.A.a.b.a #7	ENSGT00940000156115 #8	ENSGT00530000063770.c.a #9	ENSGT00390000010045.g.b.a #10	ENSGT00950000183182.a.a #11	ENSGT01090000260093.b #12	ENSGT00950000182978.B #13	ENSGT01060000248589.D	ENSGT00390000015229.p	ENSGT00390000012569.a.fb.a.b.a ##16	ENSGT00390000006264 #17	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00940000157582 #21	ENSGT00940000155543.e #22	ENSGT00940000155543.f #22	ENSGT00940000156139 #23	ENSGT00940000162094 #24	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761	ENSGT00940000157669	ENSGT00940000157833	ENSGT00940000156213	ENSGT00940000156592	ENSGT00940000157151	ENSGT00940000159638	ENSGT00940000153446.a.b	ENSGT00940000160209	ENSGT00910000147267	ENSGT00940000158079
Cebidae_a	ANCESTRAL SPECIES		ENSGT00940000160073	ENSGT01000000214440.A.a.b.a #7	ENSGT00940000156115 #8	ENSGT00530000063770.c.a #9	ENSGT00390000010045.g.b.a #10	ENSGT00950000183182.a.a #11	ENSGT01090000260093.b #12	ENSGT00950000182978.B #13	ENSGT00390000012569.a.fb.a.b.b ##16	ENSGT00390000015229.p	ENSGT00390000012569.a.fb.a.b.a ##16	ENSGT00390000006264 #17	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00940000157582 #21	ENSGT00940000155543.f #22	ENSGT00940000156139 #23	ENSGT00940000162094 #24	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761	ENSGT00940000157669	ENSGT00940000157833	ENSGT00940000156213	ENSGT00940000156592	ENSGT00940000157151	ENSGT00940000159638	ENSGT00940000153446.a.b	ENSGT00940000160209	ENSGT00910000147267	ENSGT00940000158079
Bolivian squirrel monkey	MODERN SPECIES	260					THEMIS2 (ENSSBOG00000027590) #9	ENSSBOG00000021756 #10	SMPDL3B (ENSSBOG00000004435) #11	XKR8 (ENSSBOG00000001611) #12	EYA3 (ENSSBOG00000032353) #13	ENSSBOG00000023608 ##16	ATP5IF1 (ENSSBOG00000019841) #17	SESN2 (ENSSBOG00000025091) #18	MED18 (ENSSBOG00000012808) #19	PHACTR4 (ENSSBOG00000028484) #21	ENSSBOG00000027297	ENSSBOG00000001098 #22	ENSSBOG00000024457	TRNAU1AP (ENSSBOG00000021299) #23	ENSSBOG00000010940 #24
Capuchin	MODERN SPECIES	87	FAM76A (ENSCCAG00000032340)	ENSCCAG00000031655	STX12 (ENSCCAG00000023253) #7	PPP1R8 (ENSCCAG00000025347) #8	THEMIS2 (ENSCCAG00000035270) #9	RPA2 (ENSCCAG00000025366) ##10	SMPDL3B (ENSCCAG00000023858) #11	XKR8 (ENSCCAG00000033700) #12	EYA3 (ENSCCAG00000024843) #13	ENSCCAG00000027313	DNAJC8 (ENSCCAG00000026898) ##16	ATP5IF1 (ENSCCAG00000037499) #17	SESN2 (ENSCCAG00000032713) #18	MED18 (ENSCCAG00000015706) #19	PHACTR4 (ENSCCAG00000020309) #21	ENSCCAG00000025966 #22	TRNAU1AP (ENSCCAG00000037506) #23	RAB42 (ENSCCAG00000037497) #24	TAF12 (ENSCCAG00000037353) #25	GMEB1 (ENSCCAG00000005580) #26	YTHDF2 (ENSCCAG00000027370)	ENSCCAG00000036720	OPRD1 (ENSCCAG00000032398)	EPB41 (ENSCCAG00000036038)	SRSF4 (ENSCCAG00000033585)	MECR (ENSCCAG00000019564)	PTPRU (ENSCCAG00000030417)
Mas night monkey	MODERN SPECIES	1281	FAM76A (ENSANAG00000034741)	STX12 (ENSANAG00000034764) #7	PPP1R8 (ENSANAG00000011047) #8	THEMIS2 (ENSANAG00000032929) #9	ENSANAG00000033411	SMPDL3B (ENSANAG00000029765) #11	XKR8 (ENSANAG00000020923) #12	EYA3 (ENSANAG00000024390) #13	ENSANAG00000032813	ENSANAG00000033952 ##16	ATP5IF1 (ENSANAG00000029390) #17	SESN2 (ENSANAG00000029947) #18	MED18 (ENSANAG00000034771) #19	PHACTR4 (ENSANAG00000035911) #21	ENSANAG00000029446	ENSANAG00000036884 #22	TRNAU1AP (ENSANAG00000018976) #23	RAB42 (ENSANAG00000035487) #24	TAF12 (ENSANAG00000035455) #25	GMEB1 (ENSANAG00000034422) #26	YTHDF2 (ENSANAG00000032408)	OPRD1 (ENSANAG00000036570)	EPB41 (ENSANAG00000020638)	TMEM200B (ENSANAG00000021732)	SRSF4 (ENSANAG00000037134)	MECR (ENSANAG00000022014)	PTPRU (ENSANAG00000021332)	MATN1 (ENSANAG00000001841)	LAPTM5 (ENSANAG00000020926)	SDC3 (ENSANAG00000024425)	PUM1 (ENSANAG00000027865)
Tarsier	MODERN SPECIES	6004												GRK6 (ENSTSYG00000035570)	ENSTSYG00000028949	MED18 (ENSTSYG00000036419) #19	PHACTR4 (ENSTSYG00000010639) #21	RCC1 (ENSTSYG00000012633) #22	TRNAU1AP (ENSTSYG00000003506) #23
Strepsirrhini	ANCESTRAL SPECIES		ENSGT00940000163178	ENSGT00940000160073	ENSGT01000000214440.A.a.b.a #7	ENSGT00940000156115 #8	ENSGT00530000063770.c.a #9	ENSGT00390000010045 #10	ENSGT00950000183182.a.a #11	ENSGT01090000260093.b #12	ENSGT00950000182978.B #13	ENSGT01060000248589.D	ENSGT00390000012569.a #16	ENSGT00390000006264 #17	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #23	ENSGT00940000162094 #24	ENSGT00940000164873	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761	ENSGT00940000157669	ENSGT00940000157833	ENSGT00530000063698.b	ENSGT00940000156213	ENSGT00940000156592	ENSGT00940000157151	ENSGT00940000159638	ENSGT00940000153446.a.b	ENSGT00940000160209
Lemuriformes	ANCESTRAL SPECIES		ENSGT00940000163178	ENSGT00940000160073	ENSGT01000000214440.A.a.b.a #7	ENSGT00940000156115 #8	ENSGT00530000063770.c.a #9	ENSGT00390000010045 #10	ENSGT00950000183182.a.a #11	ENSGT01090000260093.b #12	ENSGT00950000182978.B #13	ENSGT01060000248589.D	ENSGT00390000012569.a.`b #16	ENSGT00390000006264 #17	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #23	ENSGT00940000162094 #24	ENSGT00940000164873	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761	ENSGT00940000157669	ENSGT00940000157833	ENSGT00530000063698.b	ENSGT00940000156213	ENSGT00940000156592	ENSGT00940000157151	ENSGT00940000159638	ENSGT00940000153446.a.b	ENSGT00940000160209
Lemuriformes_a	ANCESTRAL SPECIES	7	ENSGT00940000163178	ENSGT00940000160073	ENSGT01000000214440.A.a.b.a #7	ENSGT00940000156115 #8	ENSGT00530000063770.c.a #9	ENSGT00390000010045 #10	ENSGT00950000183182.a.a #11	ENSGT01090000260093.b #12	ENSGT00950000182978.B #13	ENSGT01060000248589.D	ENSGT00390000012569.a.`b #16	ENSGT00390000006264 #17	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #23	ENSGT00940000162094 #24	ENSGT00940000164873	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761	ENSGT00940000157669	ENSGT00940000157833	ENSGT00530000063698.b	ENSGT00940000156213	ENSGT00940000156592	ENSGT00940000157151
Coquerels sifaka	MODERN SPECIES	344	AHDC1 (ENSPCOG00000012355)	FGR (ENSPCOG00000021101)	IFI6 (ENSPCOG00000019541)	FAM76A (ENSPCOG00000017956)	STX12 (ENSPCOG00000014712) #7	PPP1R8 (ENSPCOG00000013455) #8	THEMIS2 (ENSPCOG00000002667) #9	RPA2 (ENSPCOG00000023673) #10	SMPDL3B (ENSPCOG00000026165) #11	XKR8 (ENSPCOG00000009916) #12	EYA3 (ENSPCOG00000009524) #13	ATP5IF1 (ENSPCOG00000028473) #17	SESN2 (ENSPCOG00000023322) #18	MED18 (ENSPCOG00000022541) #19	PHACTR4 (ENSPCOG00000015433) #21	RCC1 (ENSPCOG00000015509) #22	ENSPCOG00000027712 #23	RAB42 (ENSPCOG00000008605) #24	TAF12 (ENSPCOG00000017974) #25	GMEB1 (ENSPCOG00000028438) #26	YTHDF2 (ENSPCOG00000010131)	ENSPCOG00000020601	OPRD1 (ENSPCOG00000018592)	EPB41 (ENSPCOG00000021118)	SRSF4 (ENSPCOG00000027341)	MECR (ENSPCOG00000018330)	PTPRU (ENSPCOG00000025974)
Greater bamboo lemur	MODERN SPECIES	122							SMPDL3B (ENSPSMG00000010811) #11	XKR8 (ENSPSMG00000010782) #12	EYA3 (ENSPSMG00000010772) #13	PTAFR (ENSPSMG00000010713)	DNAJC8 (ENSPSMG00000010707) #16	ATP5IF1 (ENSPSMG00000010696) #17	SESN2 (ENSPSMG00000010685) #18	MED18 (ENSPSMG00000010662) #19	PHACTR4 (ENSPSMG00000010641) #21	RCC1 (ENSPSMG00000010510) #22	TRNAU1AP (ENSPSMG00000010448) #23	RAB42 (ENSPSMG00000010409) #24	ENSPSMG00000010403	TAF12 (ENSPSMG00000010398) #25	GMEB1 (ENSPSMG00000010381) #26	ENSPSMG00000010343	YTHDF2 (ENSPSMG00000010340)	OPRD1 (ENSPSMG00000010321)	EPB41 (ENSPSMG00000009246)	TMEM200B (ENSPSMG00000008276)	SRSF4 (ENSPSMG00000008263)	MECR (ENSPSMG00000008225)	PTPRU (ENSPSMG00000008032)
Mouse lemur	MODERN SPECIES	11	ENSMICG00000011066 #7	PPP1R8 (ENSMICG00000043807) #8	ENSMICG00000036349	THEMIS2 (ENSMICG00000011084) #9	RPA2 (ENSMICG00000042716) #10	SMPDL3B (ENSMICG00000011091) #11	XKR8 (ENSMICG00000047287) #12	EYA3 (ENSMICG00000011109) #13	PTAFR (ENSMICG00000047486)	ENSMICG00000001222 #16	ATP5IF1 (ENSMICG00000001227) #17	ENSMICG00000035317	SESN2 (ENSMICG00000037742) #18	MED18 (ENSMICG00000006508) #19	PHACTR4 (ENSMICG00000037236) #21	RCC1 (ENSMICG00000047487) #22	TRNAU1AP (ENSMICG00000008386) #23	RAB42 (ENSMICG00000029915) #24	TAF12 (ENSMICG00000033777) #25	GMEB1 (ENSMICG00000046821) #26	YTHDF2 (ENSMICG00000003729)	OPRD1 (ENSMICG00000003731)	ENSMICG00000027839	SRSF4 (ENSMICG00000043567)	MECR (ENSMICG00000008974)	PTPRU (ENSMICG00000008985)	MATN1 (ENSMICG00000011541)	LAPTM5 (ENSMICG00000011554)	SDC3 (ENSMICG00000034678)	ENSMICG00000007713	NKAIN1 (ENSMICG00000009329)
Bushbaby	MODERN SPECIES	299															PHACTR4 (ENSOGAG00000015245) #21	RCC1 (ENSOGAG00000007487) #22	RAB42 (ENSOGAG00000006951) #24	TAF12 (ENSOGAG00000026358) #25	TRNAU1AP (ENSOGAG00000002274) #23	GMEB1 (ENSOGAG00000006956) #26	YTHDF2 (ENSOGAG00000014648)	OPRD1 (ENSOGAG00000025601)	ENSOGAG00000025718	EPB41 (ENSOGAG00000001603)	TMEM200B (ENSOGAG00000025912)	SRSF4 (ENSOGAG00000015515)	MECR (ENSOGAG00000015520)	PTPRU (ENSOGAG00000015523)	MATN1 (ENSOGAG00000014950)	LAPTM5 (ENSOGAG00000014958)	ENSOGAG00000033118
Euarchontoglires_A	ANCESTRAL SPECIES		ENSGT00940000157554	ENSGT00940000160073	ENSGT01000000214440.A.a.b.a #7	ENSGT00940000156115 #8	ENSGT00530000063770.c.a #9	ENSGT00390000010045 #10	ENSGT00950000183182.a.a #11	ENSGT01090000260093.b #12	ENSGT00950000182978.B #13	ENSGT01060000248589.D	ENSGT00390000012569.a #16	ENSGT00390000006264 #17	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #23	ENSGT00940000162094 #24	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761	ENSGT00940000157669	ENSGT00940000157833	ENSGT00530000063698.b	ENSGT00940000156213	ENSGT00940000156592	ENSGT00940000157151	ENSGT00940000159638	ENSGT00940000153446.a.b	ENSGT00940000160209	ENSGT00940000158079
Glires	ANCESTRAL SPECIES		ENSGT00940000157554	ENSGT00940000160073	ENSGT01000000214440.A.a.b.a #7	ENSGT00940000156115 #8	ENSGT00530000063770.c.a #9	ENSGT00390000010045 #10	ENSGT00950000183182.a.a #11	ENSGT01090000260093.b #12	ENSGT00950000182978.B #13	ENSGT01060000248589.D	ENSGT00390000012569.a #16	ENSGT00390000006264 #17	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #23	ENSGT00940000162094 #24	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761	ENSGT00940000157669	ENSGT00940000157833	ENSGT00530000063698.b	ENSGT00940000156213	ENSGT00940000156592	ENSGT00940000157151	ENSGT00940000159638	ENSGT00940000153446.a.b	ENSGT00940000160209	ENSGT00940000158079
Rodentia	ANCESTRAL SPECIES		ENSGT00940000157554	ENSGT00940000160073	ENSGT01000000214440.A.a.b.a #7	ENSGT00940000156115 #8	ENSGT00530000063770.c.a #9	ENSGT00390000010045 #10	ENSGT00950000183182.a.a #11	ENSGT01090000260093.b #12	ENSGT00950000182978.B #13	ENSGT01060000248589.D	ENSGT00390000012569.a #16	ENSGT00390000006264 #17	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #23	ENSGT00940000162094 #24	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761	ENSGT00940000157669	ENSGT00940000157833	ENSGT00530000063698.b	ENSGT00940000156213	ENSGT00940000156592	ENSGT00940000157151	ENSGT00940000159638	ENSGT00940000153446.a.b	ENSGT00940000160209	ENSGT00940000158079
Rodentia_B	ANCESTRAL SPECIES		ENSGT00940000157554	ENSGT00940000160073	ENSGT01000000214440.A.a.b.a #7	ENSGT00940000156115 #8	ENSGT00530000063770.c.a #9	ENSGT00390000010045 #10	ENSGT00950000183182.a.a #11	ENSGT01090000260093.b #12	ENSGT00950000182978.B #13	ENSGT01060000248589.D	ENSGT00390000012569.a #16	ENSGT00390000006264 #17	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #23	ENSGT00940000162094 #24	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761	ENSGT00940000157669	ENSGT00940000157833	ENSGT00530000063698.b	ENSGT00940000156213	ENSGT00940000156592	ENSGT00940000157151	ENSGT00940000159638	ENSGT00940000153446.a.b	ENSGT00940000160209	ENSGT00940000158079
Myomorpha	ANCESTRAL SPECIES	3	ENSGT00940000157554	ENSGT00940000160073	ENSGT01000000214440.A.a.b.a #7	ENSGT00940000156115 #8	ENSGT00530000063770.c.a #9	ENSGT00390000010045 #10	ENSGT00950000183182.a.a #11	ENSGT01090000260093.b #12	ENSGT00950000182978.B #13	ENSGT01060000248589.D	ENSGT00390000012569.a #16	ENSGT00390000006264 #17	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #23	ENSGT00940000162094 #24	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761	ENSGT00940000157669	ENSGT00940000157833	ENSGT00530000063698.b	ENSGT00940000156213	ENSGT00940000156592	ENSGT00940000157151	ENSGT00940000159638	ENSGT00940000153446.a.b	ENSGT00940000160209	ENSGT00940000158079
Muroidea	ANCESTRAL SPECIES	3	ENSGT00940000157554	ENSGT00940000160073	ENSGT01000000214440.A.a.b.a #7	ENSGT00940000156115 #8	ENSGT00530000063770.c.a #9	ENSGT00390000010045 #10	ENSGT00950000183182.a.a #11	ENSGT01090000260093.b #12	ENSGT00950000182978.B #13	ENSGT01060000248589.D	ENSGT00390000012569.a #16	ENSGT00390000006264 #17	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #23	ENSGT00940000162094 #24	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761	ENSGT00940000157669	ENSGT00940000157833	ENSGT00530000063698.b	ENSGT00940000156213	ENSGT00940000156592	ENSGT00940000157151	ENSGT00940000159638	ENSGT00940000153446.a.b	ENSGT00940000160209	ENSGT00940000158079
Muroidea_A	ANCESTRAL SPECIES	3	ENSGT00940000157554	ENSGT00940000160073	ENSGT01000000214440.A.a.b.a #7	ENSGT00940000156115 #8	ENSGT00530000063770.c.a #9	ENSGT00390000010045 #10	ENSGT00950000183182.a.a #11	ENSGT01090000260093.b #12	ENSGT00950000182978.B #13	ENSGT01060000248589.D	ENSGT00390000012569.a #16	ENSGT00390000006264 #17	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #23	ENSGT00940000162094 #24	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761	ENSGT00940000157669	ENSGT00860000135912	ENSGT00940000157833	ENSGT00530000063698.b	ENSGT00940000156213	ENSGT00940000156592	ENSGT00940000157151	ENSGT00940000159638	ENSGT00940000153446.a.b	ENSGT00940000160209
Cricetidae	ANCESTRAL SPECIES	2	ENSGT00390000018883	ENSGT00940000157554	ENSGT00940000160073	ENSGT01000000214440.A.a.b.a #7	ENSGT00940000156115 #8	ENSGT00530000063770.c.a #9	ENSGT00390000010045 #10	ENSGT00950000183182.a.a #11	ENSGT01090000260093.b #12	ENSGT00950000182978.B #13	ENSGT01060000248589.D	ENSGT00940000164617	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #23	ENSGT00940000162094 #24	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761	ENSGT00940000157669	ENSGT00860000135912	ENSGT00940000157833	ENSGT00530000063698.b	ENSGT00940000156213	ENSGT00940000156592	ENSGT00940000157151	ENSGT00940000159638	ENSGT00940000153446.a.b	ENSGT00940000160209
Cricetinae	ANCESTRAL SPECIES	5	ENSGT00940000157554	ENSGT00940000160073	ENSGT01000000214440.A.a.b.a #7	ENSGT00940000156115 #8	ENSGT00530000063770.c.a #9	ENSGT00390000010045 #10	ENSGT00950000183182.a.a #11	ENSGT01090000260093.b #12	ENSGT00950000182978.B #13	ENSGT01060000248589.D	ENSGT00390000012569.a #16	ENSGT00390000006264 #17	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #23	ENSGT00940000162094 #24	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761	ENSGT00940000157669	ENSGT00860000135912	ENSGT00940000157833	ENSGT00530000063698.b	ENSGT00940000156213	ENSGT00940000156592	ENSGT00940000157151	ENSGT00940000159638	ENSGT00940000153446.a.b	ENSGT00940000160209
Chinese hamster chok1gshd	DUPLICATION
Chinese hamster chok1gshd	MODERN SPECIES	111	Fgr (ENSCGRG00001024485)	ENSCGRG00001007863	Stx12 (ENSCGRG00001016934) #7	Ppp1r8 (ENSCGRG00001019839) #8	Themis2 (ENSCGRG00001024729) #9	Rpa2 (ENSCGRG00001007332) #10	Smpdl3b (ENSCGRG00001016883) #11	Xkr8 (ENSCGRG00001017118) #12	Eya3 (ENSCGRG00001018576) #13	Ptafr (ENSCGRG00001012404)	ENSCGRG00001000534 #16	Atpif1 (ENSCGRG00001023397) #17	Sesn2 (ENSCGRG00001020650) #18	MED18 (ENSCGRG00001022480) #19	Phactr4 (ENSCGRG00001021956) #21	ENSCGRG00001023596 #22	Trnau1ap (ENSCGRG00001004713) #23	Rab42 (ENSCGRG00001019426) #24	Taf12 (ENSCGRG00001024959) #25	Gmeb1 (ENSCGRG00001022851) #26	Ythdf2 (ENSCGRG00001016726)	Oprd1 (ENSCGRG00001010255)	ENSCGRG00001024915	Epb41 (ENSCGRG00001021983)	Tmem200b (ENSCGRG00001010757)	Srsf4 (ENSCGRG00001021115)	Mecr (ENSCGRG00001024597)	Ptpru (ENSCGRG00001023937)	Matn1 (ENSCGRG00001019479)	Laptm5 (ENSCGRG00001021108)	Sdc3 (ENSCGRG00001023681)
Chinese hamster chok1gshd	MODERN SPECIES	1	ENSCGRG00001010369	2210408I21Rik (ENSCGRG00001009297)	Slf1 (ENSCGRG00001007173)	Mctp1 (ENSCGRG00001011214)	ENSCGRG00001007825	Fam81b (ENSCGRG00001005643)	Skic3 (ENSCGRG00001016182)	Arsk (ENSCGRG00001019637)	ENSCGRG00001010656	Rfesd (ENSCGRG00001018403)	Spata9 (ENSCGRG00001018426)	Rhobtb3 (ENSCGRG00001016766)	Glrx (ENSCGRG00001012408)	Ell2 (ENSCGRG00001012065)	Pcsk1 (ENSCGRG00001012020)	ENSCGRG00001007082 #22	Cast (ENSCGRG00001002654)	Erap1 (ENSCGRG00001007105)	ENSCGRG00001007786	ENSCGRG00001008373	Lnpep (ENSCGRG00001016259)	Lix1 (ENSCGRG00001017834)	Riok2 (ENSCGRG00001000871)	ENSCGRG00001024900	ENSCGRG00001009968	Rgmb (ENSCGRG00001012341)	Chd1 (ENSCGRG00001023943)	Prdm9 (ENSCGRG00001005716)	Pdcd2 (ENSCGRG00001010000)	Tbp (ENSCGRG00001001372)	Psmb1 (ENSCGRG00001009770)
Golden Hamster	MODERN SPECIES	709	Ahdc1 (ENSMAUG00000013108)	Fgr (ENSMAUG00000006765)	Fam76a (ENSMAUG00000016561)	Stx12 (ENSMAUG00000016314) #7	Ppp1r8 (ENSMAUG00000009797) #8	Themis2 (ENSMAUG00000000821) #9	Rpa2 (ENSMAUG00000002825) #10	Smpdl3b (ENSMAUG00000014184) #11	Xkr8 (ENSMAUG00000009395) #12	Eya3 (ENSMAUG00000015674) #13	Ptafr (ENSMAUG00000008850)	ENSMAUG00000018320	Sesn2 (ENSMAUG00000000726) #18	Med18 (ENSMAUG00000019176) #19	Phactr4 (ENSMAUG00000018484) #21	Rcc1 (ENSMAUG00000020618) #22	ENSMAUG00000020183	Rab42 (ENSMAUG00000020223) #24	Taf12 (ENSMAUG00000019991) #25	Gmeb1 (ENSMAUG00000008912) #26	ENSMAUG00000010032	Oprd1 (ENSMAUG00000012704)	ENSMAUG00000001636	Tmem200b (ENSMAUG00000021672)	Srsf4 (ENSMAUG00000021940)	Mecr (ENSMAUG00000021996)	Ptpru (ENSMAUG00000016330)	Matn1 (ENSMAUG00000019156)	Laptm5 (ENSMAUG00000013566)	Pum1 (ENSMAUG00000022090)	Nkain1 (ENSMAUG00000010811)
Cricetidae_B	ANCESTRAL SPECIES	2	ENSGT00940000157554	ENSGT00940000160073	ENSGT01000000214440.A.a.b.a #7	ENSGT00940000156115 #8	ENSGT00530000063770.c.a #9	ENSGT00390000010045 #10	ENSGT00950000183182.a.a #11	ENSGT01090000260093.b #12	ENSGT00950000182978.B #13	ENSGT01060000248589.D	ENSGT00390000012569.a #16	ENSGT00390000006264 #17	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #23	ENSGT00940000162094 #24	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761	ENSGT00940000157669	ENSGT00940000157833	ENSGT00530000063698.b	ENSGT00940000156213	ENSGT00940000156592	ENSGT00940000157151	ENSGT00940000159638	ENSGT00940000153446.a.b	ENSGT00940000160209	ENSGT00940000158079
Northern American deer mouse	MODERN SPECIES	11	ENSPEMG00000014678	Stx12 (ENSPEMG00000025346) #7	Ppp1r8 (ENSPEMG00000003512) #8	Themis2 (ENSPEMG00000008336) #9	Rpa2 (ENSPEMG00000006270) #10	Smpdl3b (ENSPEMG00000003316) #11	Xkr8 (ENSPEMG00000025921) #12	Eya3 (ENSPEMG00000000391) #13	Ptafr (ENSPEMG00000025544)	Dnajc8 (ENSPEMG00000013544) #16	Atpif1 (ENSPEMG00000025196) #17	Sesn2 (ENSPEMG00000001779) #18	Med18 (ENSPEMG00000015562) #19	ENSPEMG00000004708	Phactr4 (ENSPEMG00000000179) #21	Rcc1 (ENSPEMG00000016697) #22	Trnau1ap (ENSPEMG00000007877) #23	Rab42 (ENSPEMG00000027698) #24	Taf12 (ENSPEMG00000015879) #25	Ythdf2 (ENSPEMG00000014903)	Oprd1 (ENSPEMG00000007805)	Epb41 (ENSPEMG00000016438)	Tmem200b (ENSPEMG00000012688)	Srsf4 (ENSPEMG00000003365)	Mecr (ENSPEMG00000009582)	Ptpru (ENSPEMG00000010874)	Matn1 (ENSPEMG00000017513)	Laptm5 (ENSPEMG00000016483)	Sdc3 (ENSPEMG00000015709)	Pum1 (ENSPEMG00000010009)	Nkain1 (ENSPEMG00000000116)
Prairie vole	MODERN SPECIES	1	Fgr (ENSMOCG00000019562)	Fam76a (ENSMOCG00000021395)	Stx12 (ENSMOCG00000014196) #7	ENSMOCG00000022691 #8	Themis2 (ENSMOCG00000003168) #9	Rpa2 (ENSMOCG00000007092) #10	Smpdl3b (ENSMOCG00000016324) #11	Xkr8 (ENSMOCG00000002218) #12	Eya3 (ENSMOCG00000004582) #13	Ptafr (ENSMOCG00000013409)	Dnajc8 (ENSMOCG00000017213) #16	Atpif1 (ENSMOCG00000002419) #17	Sesn2 (ENSMOCG00000012718) #18	Med18 (ENSMOCG00000022182) #19	Phactr4 (ENSMOCG00000012753) #21	Rcc1 (ENSMOCG00000016589) #22	Trnau1ap (ENSMOCG00000011189) #23	Rab42 (ENSMOCG00000021639) #24	Taf12 (ENSMOCG00000006333) #25	Gmeb1 (ENSMOCG00000012332) #26	Ythdf2 (ENSMOCG00000018361)	Oprd1 (ENSMOCG00000018388)	Epb41 (ENSMOCG00000022373)	Tmem200b (ENSMOCG00000014010)	Srsf4 (ENSMOCG00000013319)	Mecr (ENSMOCG00000017926)	Ptpru (ENSMOCG00000019862)	Matn1 (ENSMOCG00000011816)	Laptm5 (ENSMOCG00000014297)	Sdc3 (ENSMOCG00000020345)	Pum1 (ENSMOCG00000015463)
Murinae	ANCESTRAL SPECIES	2	ENSGT00940000157554	ENSGT00940000160073	ENSGT01000000214440.A.a.b.a #7	ENSGT00940000156115 #8	ENSGT00530000063770.c.a #9	ENSGT00390000010045 #10	ENSGT00950000183182.a.a #11	ENSGT01090000260093.b #12	ENSGT00950000182978.B #13	ENSGT01060000248589.D	ENSGT00390000012569.a #16	ENSGT00390000006264 #17	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #23	ENSGT00940000162094 #24	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761	ENSGT00940000157669	ENSGT00860000135912	ENSGT00940000157833	ENSGT00530000063698.b	ENSGT00940000156213	ENSGT00940000156592	ENSGT00940000157151	ENSGT00940000159638	ENSGT00940000153446.a.b	ENSGT00940000160209
Mus	ANCESTRAL SPECIES	3	ENSGT00940000157554	ENSGT00940000160073	ENSGT01000000214440.A.a.b.a #7	ENSGT00940000156115 #8	ENSGT00530000063770.c.a #9	ENSGT00390000010045 #10	ENSGT00950000183182.a.a #11	ENSGT01090000260093.b #12	ENSGT00950000182978.B #13	ENSGT01060000248589.D	ENSGT00390000012569.a #16	ENSGT00390000006264 #17	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #23	ENSGT00940000162094 #24	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761	ENSGT00940000157669	ENSGT00860000135912	ENSGT00940000157833	ENSGT00530000063698.b	ENSGT00940000156213	ENSGT00940000156592	ENSGT00940000157151	ENSGT00940000159638	ENSGT00940000153446.a.b	ENSGT00940000160209
Mus_A	ANCESTRAL SPECIES	3	ENSGT00940000157554	ENSGT00940000160073	ENSGT01000000214440.A.a.b.a #7	ENSGT00940000156115 #8	ENSGT00530000063770.c.a #9	ENSGT00390000010045 #10	ENSGT00950000183182.a.a #11	ENSGT01090000260093.b #12	ENSGT00950000182978.B #13	ENSGT01060000248589.D	ENSGT00390000012569.a #16	ENSGT00390000006264 #17	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #23	ENSGT00940000162094 #24	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761	ENSGT00940000157669	ENSGT00860000135912	ENSGT00940000157833	ENSGT00530000063698.b	ENSGT00940000156213	ENSGT00940000156592	ENSGT00940000157151	ENSGT00940000159638	ENSGT00940000153446.a.b	ENSGT00940000160209
Mus_B	ANCESTRAL SPECIES	5	ENSGT00940000157554	ENSGT00940000160073	ENSGT01000000214440.A.a.b.a #7	ENSGT00940000156115 #8	ENSGT00530000063770.c.a #9	ENSGT00390000010045 #10	ENSGT00950000183182.a.a #11	ENSGT01090000260093.b #12	ENSGT00950000182978.B #13	ENSGT01060000248589.D	ENSGT00390000012569.a #16	ENSGT00390000006264 #17	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #23	ENSGT00940000162094 #24	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761	ENSGT00940000157669	ENSGT00860000135912	ENSGT00940000157833	ENSGT00530000063698.b	ENSGT00940000156213	ENSGT00940000156592	ENSGT00940000157151	ENSGT00940000159638	ENSGT00940000153446.a.b	ENSGT00940000160209
Mouse	MODERN SPECIES	13	Fgr (ENSMUSG00000028874)	Fam76a (ENSMUSG00000028878)	Stx12 (ENSMUSG00000028879) #7	Ppp1r8 (ENSMUSG00000028882) #8	Themis2 (ENSMUSG00000037731) #9	Rpa2 (ENSMUSG00000028884) #10	Smpdl3b (ENSMUSG00000028885) #11	Xkr8 (ENSMUSG00000037752) #12	Eya3 (ENSMUSG00000028886) #13	Ptafr (ENSMUSG00000056529)	Dnajc8 (ENSMUSG00000054405) #16	Atpif1 (ENSMUSG00000054428) #17	Sesn2 (ENSMUSG00000028893) #18	Med18 (ENSMUSG00000066042) #19	Phactr4 (ENSMUSG00000066043) #21	Rcc1 (ENSMUSG00000028896) #22	Trnau1ap (ENSMUSG00000028898) #23	Rab42 (ENSMUSG00000089687) #24	Taf12 (ENSMUSG00000028899) #25	Gmeb1 (ENSMUSG00000028901) #26	Ythdf2 (ENSMUSG00000040025)	Oprd1 (ENSMUSG00000050511)	Epb41 (ENSMUSG00000028906)	Tmem200b (ENSMUSG00000070720)	Srsf4 (ENSMUSG00000028911)	Mecr (ENSMUSG00000028910)	Ptpru (ENSMUSG00000028909)	Matn1 (ENSMUSG00000040533)	Laptm5 (ENSMUSG00000028581)	Sdc3 (ENSMUSG00000025743)	Pum1 (ENSMUSG00000028580)
Mus_C	ANCESTRAL SPECIES	2	ENSGT00940000157554	ENSGT00940000160073.g	ENSGT01000000214440.A.a.b.a #7	ENSGT00940000156115 #8	ENSGT00530000063770.c.a #9	ENSGT00390000010045 #10	ENSGT00950000183182.a.a #11	ENSGT01090000260093.b #12	ENSGT00950000182978.B #13	ENSGT01060000248589.D	ENSGT00390000012569.a #16	ENSGT00390000006264 #17	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #23	ENSGT00940000162094 #24	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761	ENSGT00940000157669	ENSGT00860000135912	ENSGT00940000157833	ENSGT00530000063698.b	ENSGT00940000156213	ENSGT00940000156592	ENSGT00940000157151	ENSGT00940000159638	ENSGT00940000153446.a.b	ENSGT00940000160209
Steppe mouse	MODERN SPECIES	2797				Themis2 (ENSMSIG00000008497) #9	Rpa2 (ENSMSIG00000008505) #10	Smpdl3b (ENSMSIG00000008523) #11	Eya3 (ENSMSIG00000008546) #13	Xkr8 (ENSMSIG00000008821) #12	Ptafr (ENSMSIG00000008840)	Dnajc8 (ENSMSIG00000008847) #16	ENSMSIG00000009011	Atpif1 (ENSMSIG00000009020) #17	Sesn2 (ENSMSIG00000009040) #18	Med18 (ENSMSIG00000009082) #19	Phactr4 (ENSMSIG00000009106) #21	Rcc1 (ENSMSIG00000009244) #22	ENSMSIG00000009341 #23	Rab42 (ENSMSIG00000009484) #24	Taf12 (ENSMSIG00000009505) #25	Gmeb1 (ENSMSIG00000009569) #26	ENSMSIG00000009595	ENSMSIG00000009602	Oprd1 (ENSMSIG00000009620)	Epb41 (ENSMSIG00000009639)	ENSMSIG00000012064	Tmem200b (ENSMSIG00000012073)
spretus	MODERN SPECIES	13	Fgr (MGP_SPRETEiJ_G0027560)	Fam76a (MGP_SPRETEiJ_G0027559)	Stx12 (MGP_SPRETEiJ_G0027558) #7	Ppp1r8 (MGP_SPRETEiJ_G0027557) #8	Themis2 (MGP_SPRETEiJ_G0027556) #9	Rpa2 (MGP_SPRETEiJ_G0027555) #10	Smpdl3b (MGP_SPRETEiJ_G0027554) #11	Xkr8 (MGP_SPRETEiJ_G0027553) #12	Eya3 (MGP_SPRETEiJ_G0027552) #13	Ptafr (MGP_SPRETEiJ_G0027551)	Dnajc8 (MGP_SPRETEiJ_G0027550) #16	Atpif1 (MGP_SPRETEiJ_G0027549) #17	Sesn2 (MGP_SPRETEiJ_G0027548) #18	Med18 (MGP_SPRETEiJ_G0027547) #19	Phactr4 (MGP_SPRETEiJ_G0027546) #21	Rcc1 (MGP_SPRETEiJ_G0027545) #22	Trnau1ap (MGP_SPRETEiJ_G0027544) #23	Rab42 (MGP_SPRETEiJ_G0027543) #24	Taf12 (MGP_SPRETEiJ_G0027542) #25	Gmeb1 (MGP_SPRETEiJ_G0027541) #26	MGP_SPRETEiJ_G0027540	Oprd1 (MGP_SPRETEiJ_G0027539)	MGP_SPRETEiJ_G0027538	Epb41 (MGP_SPRETEiJ_G0027537)	Tmem200b (MGP_SPRETEiJ_G0027536)	Srsf4 (MGP_SPRETEiJ_G0027535)	MGP_SPRETEiJ_G0027534	Ptpru (MGP_SPRETEiJ_G0027533)	Matn1 (MGP_SPRETEiJ_G0027532)	Laptm5 (MGP_SPRETEiJ_G0027531)	Sdc3 (MGP_SPRETEiJ_G0027530)
Ryukyu mouse	MODERN SPECIES	13	Fgr (MGP_CAROLIEiJ_G0026579)	Fam76a (MGP_CAROLIEiJ_G0026578)	Stx12 (MGP_CAROLIEiJ_G0026577) #7	Ppp1r8 (MGP_CAROLIEiJ_G0026576) #8	Themis2 (MGP_CAROLIEiJ_G0026575) #9	Rpa2 (MGP_CAROLIEiJ_G0026574) #10	Smpdl3b (MGP_CAROLIEiJ_G0026573) #11	Xkr8 (MGP_CAROLIEiJ_G0026572) #12	Eya3 (MGP_CAROLIEiJ_G0026571) #13	Ptafr (MGP_CAROLIEiJ_G0026570)	MGP_CAROLIEiJ_G0026569 #16	Atpif1 (MGP_CAROLIEiJ_G0026568) #17	Sesn2 (MGP_CAROLIEiJ_G0026567) #18	Med18 (MGP_CAROLIEiJ_G0026566) #19	Phactr4 (MGP_CAROLIEiJ_G0026565) #21	Rcc1 (MGP_CAROLIEiJ_G0026564) #22	Trnau1ap (MGP_CAROLIEiJ_G0026563) #23	Gmeb1 (MGP_CAROLIEiJ_G0026561) #26	Oprd1 (MGP_CAROLIEiJ_G0026559)	MGP_CAROLIEiJ_G0026558	Epb41 (MGP_CAROLIEiJ_G0026557)	Tmem200b (MGP_CAROLIEiJ_G0026556)	Srsf4 (MGP_CAROLIEiJ_G0026555)	Mecr (MGP_CAROLIEiJ_G0026554)	Ptpru (MGP_CAROLIEiJ_G0026553)	Matn1 (MGP_CAROLIEiJ_G0026552)	Laptm5 (MGP_CAROLIEiJ_G0026551)	Sdc3 (MGP_CAROLIEiJ_G0026550)	Pum1 (MGP_CAROLIEiJ_G0026549)	Nkain1 (MGP_CAROLIEiJ_G0026548)	Snrnp40 (MGP_CAROLIEiJ_G0026547)
Shrew mouse	MODERN SPECIES	19	Fgr (MGP_PahariEiJ_G0028912)	Fam76a (MGP_PahariEiJ_G0028911)	MGP_PahariEiJ_G0028910 #7	Ppp1r8 (MGP_PahariEiJ_G0028909) #8	Themis2 (MGP_PahariEiJ_G0028908) #9	Rpa2 (MGP_PahariEiJ_G0028907) #10	Smpdl3b (MGP_PahariEiJ_G0028906) #11	Xkr8 (MGP_PahariEiJ_G0028905) #12	Eya3 (MGP_PahariEiJ_G0028904) #13	Ptafr (MGP_PahariEiJ_G0028903)	MGP_PahariEiJ_G0028902 #16	Atpif1 (MGP_PahariEiJ_G0028901) #17	Sesn2 (MGP_PahariEiJ_G0028900) #18	Med18 (MGP_PahariEiJ_G0028899) #19	Phactr4 (MGP_PahariEiJ_G0028898) #21	Rcc1 (MGP_PahariEiJ_G0028897) #22	Trnau1ap (MGP_PahariEiJ_G0028896) #23	Rab42 (MGP_PahariEiJ_G0028895) #24	Taf12 (MGP_PahariEiJ_G0028894) #25	Gmeb1 (MGP_PahariEiJ_G0028893) #26	Ythdf2 (MGP_PahariEiJ_G0028892)	Oprd1 (MGP_PahariEiJ_G0028891)	MGP_PahariEiJ_G0028890	Epb41 (MGP_PahariEiJ_G0028889)	Tmem200b (MGP_PahariEiJ_G0028888)	Srsf4 (MGP_PahariEiJ_G0028887)	Mecr (MGP_PahariEiJ_G0028886)	Ptpru (MGP_PahariEiJ_G0028885)	Matn1 (MGP_PahariEiJ_G0028884)	Laptm5 (MGP_PahariEiJ_G0028883)	Sdc3 (MGP_PahariEiJ_G0028882)
Rat	MODERN SPECIES	15	Fam76a (ENSRNOG00000011254)	Stx12 (ENSRNOG00000011804) #7	Ppp1r8 (ENSRNOG00000059550) #8	Themis2 (ENSRNOG00000012965) #9	Rpa2 (ENSRNOG00000013005) #10	Smpdl3b (ENSRNOG00000042326) #11	Xkr8 (ENSRNOG00000024312) #12	Eya3 (ENSRNOG00000010396) #13	Ptafr (ENSRNOG00000013231)	Dnajc8 (ENSRNOG00000013255) #16	Atp5if1 (ENSRNOG00000013300) #17	Sesn2 (ENSRNOG00000042785) #18	Med18 (ENSRNOG00000067073) #19	LOC120102993 (ENSRNOG00000031506)	Phactr4 (ENSRNOG00000046922) #21	Rcc1 (ENSRNOG00000050106) #22	Trnau1ap (ENSRNOG00000055344) #23	Rab42 (ENSRNOG00000063150) #24	Taf12 (ENSRNOG00000048288) #25	Gmeb1 (ENSRNOG00000010910) #26	Ythdf2 (ENSRNOG00000010892)	Oprd1 (ENSRNOG00000010531)	Epb41 (ENSRNOG00000010037)	Tmem200b (ENSRNOG00000065288)	Srsf4 (ENSRNOG00000010007)	Mecr (ENSRNOG00000028047)	Ptpru (ENSRNOG00000013515)	Matn1 (ENSRNOG00000010932)	Laptm5 (ENSRNOG00000011054)	Sdc3 (ENSRNOG00000011927)	Pum1 (ENSRNOG00000011709)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1411						Rpa2 (ENSNGAG00000004922) #10	Smpdl3b (ENSNGAG00000018059) #11	Xkr8 (ENSNGAG00000000492) #12	Eya3 (ENSNGAG00000018153) #13	Ptafr (ENSNGAG00000012034)	Dnajc8 (ENSNGAG00000011117) #16	Atpif1 (ENSNGAG00000020924) #17	Sesn2 (ENSNGAG00000019093) #18	ENSNGAG00000020389 #19	Phactr4 (ENSNGAG00000004944) #21	Rcc1 (ENSNGAG00000000590) #22	Trnau1ap (ENSNGAG00000015881) #23	Rab42 (ENSNGAG00000015676) #24	ENSNGAG00000015280 #25	Gmeb1 (ENSNGAG00000015007) #26	Ythdf2 (ENSNGAG00000014432)	Oprd1 (ENSNGAG00000013802)	Epb41 (ENSNGAG00000013126)	Tmem200b (ENSNGAG00000012572)	Srsf4 (ENSNGAG00000012225)	Mecr (ENSNGAG00000011918)	Ptpru (ENSNGAG00000011573)
Lesser Egyptian jerboa	MODERN SPECIES	201	ENSJJAG00000002452	Stx12 (ENSJJAG00000004079) #7	ENSJJAG00000010784 #8	Themis2 (ENSJJAG00000012926) #9	ENSJJAG00000014579 #10	Smpdl3b (ENSJJAG00000015036) #11	Xkr8 (ENSJJAG00000015552) #12	Eya3 (ENSJJAG00000017580) #13	Ptafr (ENSJJAG00000012719)	ENSJJAG00000009301	Atpif1 (ENSJJAG00000010517) #17	Sesn2 (ENSJJAG00000011184) #18	Phactr4 (ENSJJAG00000015640) #21	ENSJJAG00000022388	ENSJJAG00000012669	Rcc1 (ENSJJAG00000002119) #22	Trnau1ap (ENSJJAG00000010128) #23	Rab42 (ENSJJAG00000021507) #24	ENSJJAG00000022021 #25	Gmeb1 (ENSJJAG00000000647) #26	Ythdf2 (ENSJJAG00000013745)	ENSJJAG00000012769	Oprd1 (ENSJJAG00000015113)	Epb41 (ENSJJAG00000015995)	Tmem200b (ENSJJAG00000020828)	Srsf4 (ENSJJAG00000022153)	Mecr (ENSJJAG00000002955)	Ptpru (ENSJJAG00000012562)	ENSJJAG00000010350
Kangaroo rat	MODERN SPECIES	325	Fgr (ENSDORG00000015238)	Fam76a (ENSDORG00000000575)	Stx12 (ENSDORG00000001059) #7	ENSDORG00000025172 #8	Themis2 (ENSDORG00000003740) #9	Rpa2 (ENSDORG00000003741) #10	Smpdl3b (ENSDORG00000015612) #11	Xkr8 (ENSDORG00000023428) #12	Eya3 (ENSDORG00000015614) #13	Ptafr (ENSDORG00000027100)	Dnajc8 (ENSDORG00000004488) #16	Atpif1 (ENSDORG00000004489) #17	Sesn2 (ENSDORG00000004491) #18	Med18 (ENSDORG00000003626) #19	Phactr4 (ENSDORG00000003281) #21	Rcc1 (ENSDORG00000008750) #22	Rab42 (ENSDORG00000023607) #24	Trnau1ap (ENSDORG00000006349) #23	Taf12 (ENSDORG00000015036) #25	Gmeb1 (ENSDORG00000027761) #26	Ythdf2 (ENSDORG00000016564)	Oprd1 (ENSDORG00000015419)	ENSDORG00000028662	Srsf4 (ENSDORG00000002459)	Mecr (ENSDORG00000002462)	Ptpru (ENSDORG00000002463)	Matn1 (ENSDORG00000009341)	Sdc3 (ENSDORG00000013924)	Pum1 (ENSDORG00000001875)	Nkain1 (ENSDORG00000000481)	Lrrc38 (ENSDORG00000030076)
Rodentia_A	ANCESTRAL SPECIES		ENSGT00940000157554	ENSGT00940000160073	ENSGT01000000214440.A.a.b.a #7	ENSGT00940000156115 #8	ENSGT00530000063770.c.a #9	ENSGT00390000010045 #10	ENSGT00950000183182.a.a #11	ENSGT01090000260093.b #12	ENSGT00950000182978.B #13	ENSGT01060000248589.D	ENSGT00390000012569.a #16	ENSGT00390000006264 #17	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #23	ENSGT00940000162094 #24	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761.j	ENSGT00940000157669	ENSGT00940000157833	ENSGT00530000063698.b	ENSGT00940000156213	ENSGT00940000156592	ENSGT00940000157151	ENSGT00940000159638	ENSGT00940000153446.a.b	ENSGT00940000160209	ENSGT00940000158079
Sciuridae	ANCESTRAL SPECIES	3	ENSGT00940000157554	ENSGT00940000160073	ENSGT01000000214440.A.a.b.a #7	ENSGT00940000156115 #8	ENSGT00530000063770.c.a #9	ENSGT00390000010045 #10	ENSGT00950000183182.a.a #11	ENSGT01090000260093.b #12	ENSGT00950000182978.B #13	ENSGT01060000248589.D	ENSGT00390000012569.a #16	ENSGT00390000006264 #17	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #23	ENSGT00940000162094 #24	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761.j	ENSGT00940000157669	ENSGT00940000157833	ENSGT00530000063698.b	ENSGT00940000156213	ENSGT00940000156592	ENSGT00940000157151	ENSGT00940000159638	ENSGT00940000153446.a.b	ENSGT00940000160209	ENSGT00940000158079
Marmotini	ANCESTRAL SPECIES		ENSGT00940000160073	ENSGT01000000214440.A.a.b.a #7	ENSGT00960000190607	ENSGT00940000156115 #8	ENSGT00530000063770.c.a #9	ENSGT00390000010045 #10	ENSGT00950000183182.a.a #11	ENSGT01090000260093.b #12	ENSGT00950000182978.B #13	ENSGT01060000248589.D	ENSGT00390000012569.a #16	ENSGT00390000006264 #17	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #23	ENSGT00940000162094 #24	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761.j	ENSGT00940000157669	ENSGT00940000157833	ENSGT00530000063698.b	ENSGT00940000156213	ENSGT00940000156592	ENSGT00940000157151	ENSGT00940000159638	ENSGT00940000153446.a.b	ENSGT00940000160209	ENSGT00940000158079
Marmotini_b	ANCESTRAL SPECIES		ENSGT00940000160073	ENSGT01000000214440.A.a.b.a #7	ENSGT00960000190607	ENSGT00940000156115 #8	ENSGT00530000063770.c.a #9	ENSGT00390000010045 #10	ENSGT00950000183182.a.a #11	ENSGT01090000260093.b #12	ENSGT00950000182978.B #13	ENSGT01060000248589.D	ENSGT00390000012569.a #16	ENSGT00390000006264 #17	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #23	ENSGT00940000162094 #24	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761.j	ENSGT00940000157669	ENSGT00940000157833	ENSGT00530000063698.b	ENSGT00940000156213	ENSGT00940000156592	ENSGT00940000157151	ENSGT00940000159638	ENSGT00940000153446.a.b	ENSGT00940000160209	ENSGT00940000158079
Arctic ground squirrel	MODERN SPECIES	92	FAM76A (ENSUPAG00010021053)	STX12 (ENSUPAG00010021044) #7	ENSUPAG00010021039	PPP1R8 (ENSUPAG00010021025) #8	THEMIS2 (ENSUPAG00010021016) #9	SMPDL3B (ENSUPAG00010021005) #11	XKR8 (ENSUPAG00010020998) #12	EYA3 (ENSUPAG00010020872) #13	PTAFR (ENSUPAG00010020865)	ENSUPAG00010020856	ATP5IF1 (ENSUPAG00010020850) #17	SESN2 (ENSUPAG00010020839) #18	ENSUPAG00010020838	MED18 (ENSUPAG00010020827) #19	PHACTR4 (ENSUPAG00010020803) #21	RCC1 (ENSUPAG00010020770) #22	TRNAU1AP (ENSUPAG00010020750) #23	RAB42 (ENSUPAG00010020728) #24	ENSUPAG00010020706 #25	GMEB1 (ENSUPAG00010020697) #26	YTHDF2 (ENSUPAG00010020684)	OPRD1 (ENSUPAG00010020681)	EPB41 (ENSUPAG00010019935)	TMEM200B (ENSUPAG00010019926)	SRSF4 (ENSUPAG00010019922)	MECR (ENSUPAG00010019905)	PTPRU (ENSUPAG00010019842)	MATN1 (ENSUPAG00010019827)	LAPTM5 (ENSUPAG00010019820)	SDC3 (ENSUPAG00010019810)	PUM1 (ENSUPAG00010019620)
Squirrel	MODERN SPECIES	74	FGR (ENSSTOG00000026717)	FAM76A (ENSSTOG00000004331)	STX12 (ENSSTOG00000019943) #7	PPP1R8 (ENSSTOG00000004381) #8	THEMIS2 (ENSSTOG00000034218) #9	RPA2 (ENSSTOG00000004433) #10	SMPDL3B (ENSSTOG00000004468) #11	XKR8 (ENSSTOG00000023254) #12	EYA3 (ENSSTOG00000004478) #13	PTAFR (ENSSTOG00000015934)	DNAJC8 (ENSSTOG00000012834) #16	ATP5IF1 (ENSSTOG00000020766) #17	SESN2 (ENSSTOG00000009293) #18	MED18 (ENSSTOG00000020723) #19	PHACTR4 (ENSSTOG00000006463) #21	RCC1 (ENSSTOG00000012131) #22	TRNAU1AP (ENSSTOG00000000079) #23	RAB42 (ENSSTOG00000000084) #24	TAF12 (ENSSTOG00000000086) #25	GMEB1 (ENSSTOG00000000088) #26	YTHDF2 (ENSSTOG00000025075)	OPRD1 (ENSSTOG00000011943)	EPB41 (ENSSTOG00000032103)	TMEM200B (ENSSTOG00000034064)	SRSF4 (ENSSTOG00000015908)	MECR (ENSSTOG00000026575)	PTPRU (ENSSTOG00000015915)	MATN1 (ENSSTOG00000014709)	LAPTM5 (ENSSTOG00000021660)	SDC3 (ENSSTOG00000027125)	PUM1 (ENSSTOG00000010757)
Alpin marmot	MODERN SPECIES	15	FAM76A (ENSMMMG00000013430)	STX12 (ENSMMMG00000013420) #7	ENSMMMG00000013416	PPP1R8 (ENSMMMG00000013396) #8	THEMIS2 (ENSMMMG00000013395) #9	RPA2 (ENSMMMG00000013382) #10	SMPDL3B (ENSMMMG00000013366) #11	XKR8 (ENSMMMG00000013348) #12	EYA3 (ENSMMMG00000013195) #13	PTAFR (ENSMMMG00000013184)	DNAJC8 (ENSMMMG00000013133) #16	ATP5IF1 (ENSMMMG00000013117) #17	SESN2 (ENSMMMG00000013099) #18	MED18 (ENSMMMG00000013084) #19	PHACTR4 (ENSMMMG00000013031) #21	RCC1 (ENSMMMG00000012973) #22	TRNAU1AP (ENSMMMG00000012958) #23	RAB42 (ENSMMMG00000012933) #24	TAF12 (ENSMMMG00000012915) #25	GMEB1 (ENSMMMG00000012888) #26	YTHDF2 (ENSMMMG00000012863)	OPRD1 (ENSMMMG00000012823)	EPB41 (ENSMMMG00000011984)	TMEM200B (ENSMMMG00000011965)	SRSF4 (ENSMMMG00000011951)	MECR (ENSMMMG00000011938)	PTPRU (ENSMMMG00000011811)	LAPTM5 (ENSMMMG00000011800)	SDC3 (ENSMMMG00000011746)	PUM1 (ENSMMMG00000011433)	NKAIN1 (ENSMMMG00000011409)
Eurasian red squirrel	MODERN SPECIES		STX12 (ENSSVLG00005010643) #7	PPP1R8 (ENSSVLG00005010667) #8	THEMIS2 (ENSSVLG00005010773) #9	RPA2 (ENSSVLG00005010920) #10	SMPDL3B (ENSSVLG00005011082) #11	XKR8 (ENSSVLG00005011375) #12	ENSSVLG00005011412	EYA3 (ENSSVLG00005011513) #13	PTAFR (ENSSVLG00005011699)	DNAJC8 (ENSSVLG00005011722) #16	ATP5IF1 (ENSSVLG00005011758) #17	SESN2 (ENSSVLG00005011840) #18	MED18 (ENSSVLG00005011896) #19	ENSSVLG00005011930	PHACTR4 (ENSSVLG00005011991) #21	RCC1 (ENSSVLG00005012359) #22	TRNAU1AP (ENSSVLG00005012466) #23	RAB42 (ENSSVLG00005012595) #24	ENSSVLG00005012624 #25	GMEB1 (ENSSVLG00005012698) #26	YTHDF2 (ENSSVLG00005012853)	ENSSVLG00005012949	OPRD1 (ENSSVLG00005012967)	EPB41 (ENSSVLG00005014395)	TMEM200B (ENSSVLG00005016580)	SRSF4 (ENSSVLG00005016599)	MECR (ENSSVLG00005016630)	PTPRU (ENSSVLG00005016704)	MATN1 (ENSSVLG00005016798)	LAPTM5 (ENSSVLG00005016884)	SDC3 (ENSSVLG00005016980)
Hystricomorpha	ANCESTRAL SPECIES	4	ENSGT00940000157554	ENSGT00940000160073	ENSGT01000000214440.A.a.b.a #7	ENSGT00940000156115 #8	ENSGT00530000063770.c.a #9	ENSGT00390000010045 #10	ENSGT00950000183182.a.a #11	ENSGT01090000260093.b #12	ENSGT00950000182978.B #13	ENSGT01060000248589.D	ENSGT00390000012569.a #16	ENSGT00390000006264 #17	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #23	ENSGT00940000162094 #24	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761.j	ENSGT00940000157669	ENSGT00940000157833	ENSGT00530000063698.b	ENSGT00940000156213	ENSGT00940000156592	ENSGT00940000157151	ENSGT00940000159638	ENSGT00940000153446.a.b	ENSGT00940000160209	ENSGT00940000158079
Hystricomorpha_a	ANCESTRAL SPECIES	1	ENSGT00940000157554	ENSGT00940000160073	ENSGT01000000214440.A.a.b.a #7	ENSGT00940000156115 #8	ENSGT00530000063770.c.a #9	ENSGT00390000010045 #10	ENSGT00950000183182.a.a #11	ENSGT01090000260093.b #12	ENSGT00950000182978.B #13	ENSGT01060000248589.D	ENSGT00390000012569.a #16	ENSGT00390000006264 #17	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #23	ENSGT00940000162094 #24	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761.j	ENSGT00940000157669	ENSGT00940000157833	ENSGT00530000063698.b	ENSGT00940000156213	ENSGT00940000156592	ENSGT00940000157151	ENSGT00940000159638	ENSGT00940000153446.a.b	ENSGT00940000160209	ENSGT00940000158079
Hystricomorpha_b	ANCESTRAL SPECIES	7	ENSGT00940000157554	ENSGT00940000160073	ENSGT01000000214440.A.a.b.a #7	ENSGT00940000156115 #8	ENSGT00530000063770.c.a #9	ENSGT00390000010045 #10	ENSGT00950000183182.a.a #11	ENSGT01090000260093.b #12	ENSGT00950000182978.B #13	ENSGT01060000248589.D	ENSGT00390000012569.a #16	ENSGT00390000006264 #17	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #23	ENSGT00940000162094 #24	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761.j	ENSGT00940000157669	ENSGT00940000157833	ENSGT00530000063698.b	ENSGT00940000156213	ENSGT00940000156592	ENSGT00940000157151	ENSGT00940000159638	ENSGT00940000153446.a.b	ENSGT00940000160209	ENSGT00940000158079
Long-tailed chinchilla	MODERN SPECIES	159	FGR (ENSCLAG00000014147)	FAM76A (ENSCLAG00000008844)	STX12 (ENSCLAG00000013795) #7	PPP1R8 (ENSCLAG00000011211) #8	THEMIS2 (ENSCLAG00000012140) #9	RPA2 (ENSCLAG00000010772) #10	SMPDL3B (ENSCLAG00000011768) #11	XKR8 (ENSCLAG00000011287) #12	EYA3 (ENSCLAG00000008901) #13	PTAFR (ENSCLAG00000017842)	DNAJC8 (ENSCLAG00000007390) #16	ATP5IF1 (ENSCLAG00000014624) #17	SESN2 (ENSCLAG00000011979) #18	MED18 (ENSCLAG00000015343) #19	PHACTR4 (ENSCLAG00000016145) #21	RCC1 (ENSCLAG00000008107) #22	TRNAU1AP (ENSCLAG00000008223) #23	RAB42 (ENSCLAG00000010175) #24	TAF12 (ENSCLAG00000007187) #25	GMEB1 (ENSCLAG00000006804) #26	YTHDF2 (ENSCLAG00000007438)	OPRD1 (ENSCLAG00000010788)	EPB41 (ENSCLAG00000008568)	SRSF4 (ENSCLAG00000009008)	ENSCLAG00000017721	MECR (ENSCLAG00000010792)	PTPRU (ENSCLAG00000014778)	MATN1 (ENSCLAG00000008049)	LAPTM5 (ENSCLAG00000009573)	SDC3 (ENSCLAG00000010987)	PUM1 (ENSCLAG00000007662)
Degu	MODERN SPECIES	204	PPP1R8 (ENSODEG00000004352) #8	ENSODEG00000004373	THEMIS2 (ENSODEG00000004403) #9	ENSODEG00000004443 #10	ENSODEG00000003467 #11	XKR8 (ENSODEG00000003481) #12	EYA3 (ENSODEG00000003507) #13	PTAFR (ENSODEG00000018990)	ENSODEG00000003721 #16	ATP5IF1 (ENSODEG00000003747) #17	SESN2 (ENSODEG00000003769) #18	MED18 (ENSODEG00000003791) #19	ENSODEG00000003828	ENSODEG00000018954	PHACTR4 (ENSODEG00000003857) #21	RCC1 (ENSODEG00000003970) #22	TRNAU1AP (ENSODEG00000002970) #23	RAB42 (ENSODEG00000003021) #24	ENSODEG00000003043 #25	GMEB1 (ENSODEG00000003092) #26	ENSODEG00000003103	OPRD1 (ENSODEG00000003121)	ENSODEG00000018881	ENSODEG00000018892	ENSODEG00000003178	ENSODEG00000003196	TMEM200B (ENSODEG00000003209)	SRSF4 (ENSODEG00000003230)	MECR (ENSODEG00000003260)	PTPRU (ENSODEG00000003405)	MATN1 (ENSODEG00000003275)
Guinea pig	MODERN SPECIES	25	ENSCPOG00000031828	FAM76A (ENSCPOG00000006186)	STX12 (ENSCPOG00000013160) #7	PPP1R8 (ENSCPOG00000036078) #8	THEMIS2 (ENSCPOG00000033796) #9	RPA2 (ENSCPOG00000008766) #10	SMPDL3B (ENSCPOG00000008773) #11	ENSCPOG00000033302	EYA3 (ENSCPOG00000012512) #13	PTAFR (ENSCPOG00000031748)	DNAJC8 (ENSCPOG00000014652) #16	ATP5IF1 (ENSCPOG00000030836) #17	SESN2 (ENSCPOG00000000236) #18	MED18 (ENSCPOG00000038084) #19	PHACTR4 (ENSCPOG00000003219) #21	RCC1 (ENSCPOG00000010069) #22	TRNAU1AP (ENSCPOG00000001925) #23	RAB42 (ENSCPOG00000037627) #24	TAF12 (ENSCPOG00000009044) #25	GMEB1 (ENSCPOG00000032204) #26	YTHDF2 (ENSCPOG00000019907)	OPRD1 (ENSCPOG00000039511)	EPB41 (ENSCPOG00000007254)	TMEM200B (ENSCPOG00000020258)	SRSF4 (ENSCPOG00000036234)	MECR (ENSCPOG00000037475)	PTPRU (ENSCPOG00000000424)	ENSCPOG00000001380	MATN1 (ENSCPOG00000010146)	LAPTM5 (ENSCPOG00000007128)	SDC3 (ENSCPOG00000022452)
Naked mole-rat female	MODERN SPECIES	26	FAM76A (ENSHGLG00000009747)	ENSHGLG00000014326 #8	THEMIS2 (ENSHGLG00000019146) #9	RPA2 (ENSHGLG00000018528) #10	SMPDL3B (ENSHGLG00000012112) #11	XKR8 (ENSHGLG00000012712) #12	ENSHGLG00000046470	EYA3 (ENSHGLG00000018515) #13	ENSHGLG00000032519	PTAFR (ENSHGLG00000048424)	DNAJC8 (ENSHGLG00000011449) #16	ENSHGLG00000050011 #17	SESN2 (ENSHGLG00000011617) #18	MED18 (ENSHGLG00000049561) #19	PHACTR4 (ENSHGLG00000012380) #21	RCC1 (ENSHGLG00000010563) #22	ENSHGLG00000010380 #23	ENSHGLG00000032594 #23	RAB42 (ENSHGLG00000010181) #24	ENSHGLG00000049224 #25	GMEB1 (ENSHGLG00000012929) #26	ENSHGLG00000009933	OPRD1 (ENSHGLG00000011866)	EPB41 (ENSHGLG00000012118)	TMEM200B (ENSHGLG00000049796)	SRSF4 (ENSHGLG00000011842)	MECR (ENSHGLG00000012855)	ENSHGLG00000014761	ENSHGLG00000045877	ENSHGLG00000034685	ENSHGLG00000040884
Lagomorpha	ANCESTRAL SPECIES	21	ENSGT00950000182962.b.a	ENSGT00390000018883	ENSGT00940000157554	ENSGT00940000160073	ENSGT00940000156115 #8	ENSGT00530000063770.c.a #9	ENSGT00390000010045 #10	ENSGT00950000183182.a.a #11	ENSGT01090000260093.b #12	ENSGT00950000182978.B #13	ENSGT01060000248589.D	ENSGT00940000164617	ENSGT00390000006264 #17	ENSGT00950000183168.B.a #18	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #23	ENSGT00940000162094 #24	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761	ENSGT00940000157669	ENSGT00940000157833	ENSGT00530000063698.b	ENSGT00940000156213	ENSGT00940000156592	ENSGT00940000157151	ENSGT00940000159638	ENSGT00940000153446.a.b	ENSGT00940000160209	ENSGT00940000158079
Rabbit	DUPLICATION
Rabbit	MODERN SPECIES	4	SYTL1 (ENSOCUG00000002371)	MAP3K6 (ENSOCUG00000002379)	ENSOCUG00000007587	GPR3 (ENSOCUG00000027272)	WASF2 (ENSOCUG00000002394)	AHDC1 (ENSOCUG00000008914)	FGR (ENSOCUG00000008922)	FAM76A (ENSOCUG00000014830)	PPP1R8 (ENSOCUG00000013594) #8	SMPDL3B (ENSOCUG00000012589) #11	EYA3 (ENSOCUG00000008020) #13	PTAFR (ENSOCUG00000017831)	ENSOCUG00000017932 #17	SESN2 (ENSOCUG00000014896) #18	PHACTR4 (ENSOCUG00000027528) #21	ENSOCUG00000002346 #22	ENSOCUG00000002353	RAB42 (ENSOCUG00000003933) #24	TAF12 (ENSOCUG00000003935) #25	GMEB1 (ENSOCUG00000010893) #26	YTHDF2 (ENSOCUG00000010612)	OPRD1 (ENSOCUG00000001033)	ENSOCUG00000030120	EPB41 (ENSOCUG00000006641)	TMEM200B (ENSOCUG00000025757)	SRSF4 (ENSOCUG00000001837)	MECR (ENSOCUG00000012645)	PTPRU (ENSOCUG00000012661)	MATN1 (ENSOCUG00000008153)	SDC3 (ENSOCUG00000006838)	PUM1 (ENSOCUG00000008641)
Rabbit	MODERN SPECIES	19	ENSOCUG00000039664	ENSOCUG00000014903	ENSOCUG00000021190	ENSOCUG00000032894	NAA16 (ENSOCUG00000013024)	MTRF1 (ENSOCUG00000025207)	ENSOCUG00000014016	WBP4 (ENSOCUG00000004256)	ELF1 (ENSOCUG00000010580)	ENSOCUG00000036807	CNMD (ENSOCUG00000005852)	PCDH8 (ENSOCUG00000008197)	ENSOCUG00000034427	ENSOCUG00000006349	ENSOCUG00000026932	ENSOCUG00000023238 #22	ENSOCUG00000024464	PCDH17 (ENSOCUG00000005237)	ENSOCUG00000037923	DIAPH3 (ENSOCUG00000001719)	TDRD3 (ENSOCUG00000014261)	ENSOCUG00000030963	PCDH20 (ENSOCUG00000016877)	ENSOCUG00000022627	PCDH9 (ENSOCUG00000000774)	ENSOCUG00000024260	ENSOCUG00000030652	KLHL1 (ENSOCUG00000015164)	DACH1 (ENSOCUG00000002140)	MZT1 (ENSOCUG00000006654)	BORA (ENSOCUG00000006658)
Pika	MODERN SPECIES	639																RCC1 (ENSOPRG00000007072) #22	ENSOPRG00000007084 #23	ENSOPRG00000007095
Tree shrew	MODERN SPECIES	4275																ENSTBEG00000006787 #22
Laurasiatheria	ANCESTRAL SPECIES		ENSGT00940000163178	ENSGT00940000160073	ENSGT01000000214440.A.a.b.a #7	ENSGT00940000156115 #8	ENSGT00530000063770.c.a #9	ENSGT00390000010045 #10	ENSGT00950000183182.a.a #11	ENSGT01090000260093.b #12	ENSGT00950000182978.B #13	ENSGT01060000248589.D	ENSGT00390000012569.a #16	ENSGT00390000006264 #17	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #23	ENSGT00940000162094 #24	ENSGT00940000164873	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT01100000263839	ENSGT00940000156761	ENSGT00940000157669	ENSGT00940000157833	ENSGT00530000063698.b	ENSGT00940000156213	ENSGT00940000156592	ENSGT00940000157151	ENSGT00940000159638	ENSGT00940000153446.a.b
Laurasiatheria_a	ANCESTRAL SPECIES		ENSGT00940000163178	ENSGT00940000160073	ENSGT01000000214440.A.a.b.a #7	ENSGT00940000156115 #8	ENSGT00530000063770.c.a #9	ENSGT00390000010045 #10	ENSGT00950000183182.a.a #11	ENSGT01090000260093.b #12	ENSGT00950000182978.B #13	ENSGT01060000248589.D	ENSGT00390000012569.a #16	ENSGT00390000006264 #17	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #23	ENSGT00940000162094 #24	ENSGT00940000164873	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT01100000263839	ENSGT00940000156761	ENSGT00940000157669	ENSGT00940000157833	ENSGT00530000063698.b	ENSGT00940000156213	ENSGT00950000185227	ENSGT00940000156592	ENSGT00960000190201	ENSGT00940000157151
Artiodactyla	ANCESTRAL SPECIES		ENSGT00940000163178	ENSGT00940000160073	ENSGT01000000214440.A.a.b.a #7	ENSGT00940000156115 #8	ENSGT00530000063770.c.a #9	ENSGT00390000010045 #10	ENSGT00950000183182.a.a #11	ENSGT01090000260093.b #12	ENSGT00950000182978.B #13	ENSGT01060000248589.D	ENSGT00390000012569.a #16	ENSGT00390000006264 #17	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #23	ENSGT00940000162094 #24	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761	ENSGT00940000157669	ENSGT00940000157833	ENSGT00530000063698.b	ENSGT00940000156213	ENSGT00950000185227	ENSGT00940000156592	ENSGT00960000190201	ENSGT00940000157151	ENSGT00940000159638	ENSGT00940000153446.a.b
Suina	ANCESTRAL SPECIES	10	ENSGT00940000163178	ENSGT00940000160073	ENSGT01000000214440.A.a.b.a #7	ENSGT00940000156115 #8	ENSGT00530000063770.c.a #9	ENSGT00390000010045 #10	ENSGT00950000183182.a.a #11	ENSGT01090000260093.b #12	ENSGT00950000182978.B #13	ENSGT01060000248589.D	ENSGT00390000012569.a #16	ENSGT00390000006264 #17	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #23	ENSGT00940000162094 #24	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761	ENSGT00940000157669	ENSGT00940000157833	ENSGT00530000063698.b	ENSGT00940000156213	ENSGT00940000156592	ENSGT00940000157151	ENSGT00940000159638	ENSGT00940000153446.a.b	ENSGT00940000160209.f	ENSGT00940000158079
Pig	MODERN SPECIES	14	FAM76A (ENSSSCG00000027894)	STX12 (ENSSSCG00000024927) #7	PPP1R8 (ENSSSCG00000021634) #8	ENSSSCG00000062637	THEMIS2 (ENSSSCG00000003584) #9	RPA2 (ENSSSCG00000003583) #10	SMPDL3B (ENSSSCG00000003582) #11	XKR8 (ENSSSCG00000030623) #12	EYA3 (ENSSSCG00000003580) #13	PTAFR (ENSSSCG00000031788)	DNAJC8 (ENSSSCG00000038907) #16	ATP5IF1 (ENSSSCG00000027072) #17	SESN2 (ENSSSCG00000029438) #18	MED18 (ENSSSCG00000044404) #19	PHACTR4 (ENSSSCG00000028973) #21	RCC1 (ENSSSCG00000029097) #22	TRNAU1AP (ENSSSCG00000030284) #23	ENSSSCG00000046793	RAB42 (ENSSSCG00000030432) #24	TAF12 (ENSSSCG00000027530) #25	GMEB1 (ENSSSCG00000038872) #26	YTHDF2 (ENSSSCG00000027686)	OPRD1 (ENSSSCG00000047080)	EPB41 (ENSSSCG00000003586)	ENSSSCG00000059283	TMEM200B (ENSSSCG00000058017)	SRSF4 (ENSSSCG00000051929)	MECR (ENSSSCG00000003589)	PTPRU (ENSSSCG00000003590)	ENSSSCG00000049560	MATN1 (ENSSSCG00000022554)
Chacoan peccary	MODERN SPECIES	808	IFI6 (ENSCWAG00000010588)	FAM76A (ENSCWAG00000010629)	STX12 (ENSCWAG00000010733) #7	PPP1R8 (ENSCWAG00000010777) #8	ENSCWAG00000010859 #9	RPA2 (ENSCWAG00000010943) #10	SMPDL3B (ENSCWAG00000011003) #11	XKR8 (ENSCWAG00000011141) #12	EYA3 (ENSCWAG00000011224) #13	PTAFR (ENSCWAG00000011585)	DNAJC8 (ENSCWAG00000011604) #16	ATP5IF1 (ENSCWAG00000011697) #17	SESN2 (ENSCWAG00000011757) #18	MED18 (ENSCWAG00000011863) #19	PHACTR4 (ENSCWAG00000011905) #21	RCC1 (ENSCWAG00000012023) #22	TRNAU1AP (ENSCWAG00000012117) #23	RAB42 (ENSCWAG00000006902) #24	TAF12 (ENSCWAG00000006921) #25	GMEB1 (ENSCWAG00000006958) #26	YTHDF2 (ENSCWAG00000007018)	OPRD1 (ENSCWAG00000007029)	EPB41 (ENSCWAG00000007295)	TMEM200B (ENSCWAG00000015967)	SRSF4 (ENSCWAG00000015977)	MECR (ENSCWAG00000016005)	PTPRU (ENSCWAG00000016058)	MATN1 (ENSCWAG00000016130)	LAPTM5 (ENSCWAG00000016188)	SDC3 (ENSCWAG00000016221)	PUM1 (ENSCWAG00000016294)
Artiodactyla_a	ANCESTRAL SPECIES		ENSGT00940000163178	ENSGT00940000160073	ENSGT01000000214440.A.a.b.a #7	ENSGT00940000156115 #8	ENSGT00530000063770.c.a #9	ENSGT00390000010045 #10	ENSGT00950000183182.a.a #11	ENSGT01090000260093.b #12	ENSGT00950000182978.B #13	ENSGT01060000248589.D	ENSGT00390000012569.a #16	ENSGT00390000006264 #17	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #23	ENSGT00940000162094 #24	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761	ENSGT00940000157669	ENSGT00940000157833	ENSGT00530000063698.b	ENSGT00940000156213	ENSGT00950000185227	ENSGT00940000156592	ENSGT00960000190201	ENSGT00940000157151	ENSGT00940000159638	ENSGT00940000153446.a.b
Artiodactyla_b	ANCESTRAL SPECIES		ENSGT00940000163178	ENSGT00940000160073	ENSGT01000000214440.A.a.b.a #7	ENSGT00940000156115 #8	ENSGT00530000063770.c.a #9	ENSGT00390000010045 #10	ENSGT00950000183182.a.a #11	ENSGT01090000260093.b #12	ENSGT00950000182978.B #13	ENSGT01060000248589.D	ENSGT00390000012569.a #16	ENSGT00390000006264 #17	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #23	ENSGT00940000162094 #24	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761	ENSGT00940000157669	ENSGT00940000157833	ENSGT00530000063698.b	ENSGT00940000156213	ENSGT00940000156592	ENSGT00960000190201	ENSGT00940000157151	ENSGT00940000159638	ENSGT00940000153446.a.b	ENSGT00940000160209.f
Cetacea	ANCESTRAL SPECIES		ENSGT01000000214440.A.a.b.a #7	ENSGT00940000156115 #8	ENSGT00530000063770.c.a #9	ENSGT00390000010045.i #10	ENSGT00950000183182.a.a #11	ENSGT01090000260093.b #12	ENSGT00950000182978.B #13	ENSGT01060000248589.D	ENSGT00390000012569.a #16	ENSGT00390000006264 #17	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00940000157582.d #21	ENSGT00390000010888.c.a.b	ENSGT00940000157582.c #21	ENSGT00940000155543 #22	ENSGT00940000156139 #23	ENSGT00940000162094 #24	ENSGT00390000002144.e.a #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761	ENSGT00940000157669	ENSGT00940000157833	ENSGT00530000063698.b	ENSGT00940000156213	ENSGT00940000156592	ENSGT00960000190201	ENSGT00940000157151	ENSGT00940000159638	ENSGT00940000153446.a.b	ENSGT00940000160209.f
Odontoceti	ANCESTRAL SPECIES		ENSGT01000000214440.A.a.b.a #7	ENSGT00940000156115 #8	ENSGT00530000063770.c.a #9	ENSGT00390000010045.i #10	ENSGT00950000183182.a.a #11	ENSGT01090000260093.b #12	ENSGT00950000182978.B #13	ENSGT01060000248589.D	ENSGT00390000012569.a #16	ENSGT00390000006264 #17	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00940000157582.d #21	ENSGT00390000010888.c.a.b	ENSGT00940000157582.c #21	ENSGT00940000155543 #22	ENSGT00940000156139 #23	ENSGT00940000162094 #24	ENSGT00390000002144.e.a #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761	ENSGT00940000157669	ENSGT00940000157833	ENSGT00530000063698.b	ENSGT00940000156213	ENSGT00940000156592	ENSGT00940000157151	ENSGT00940000159638	ENSGT00940000153446.a.b	ENSGT00940000160209.f	ENSGT00940000158079
Odontoceti_a	ANCESTRAL SPECIES		ENSGT01000000214440.A.a.b.a #7	ENSGT00940000156115 #8	ENSGT00530000063770.c.a #9	ENSGT00390000010045.i #10	ENSGT00950000183182.a.a #11	ENSGT01090000260093.b #12	ENSGT00950000182978.B #13	ENSGT01060000248589.D	ENSGT00390000012569.a #16	ENSGT00390000006264 #17	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00940000157582.d #21	ENSGT00390000010888.c.a.b	ENSGT00940000157582.c #21	ENSGT00940000155543 #22	ENSGT00940000156139 #23	ENSGT00940000162094 #24	ENSGT00390000002144.e.a #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761	ENSGT00940000157669	ENSGT00940000157833	ENSGT00530000063698.b	ENSGT00940000156213	ENSGT00940000156592	ENSGT00940000157151	ENSGT00940000159638	ENSGT00940000153446.a.b	ENSGT00940000160209.f	ENSGT00940000158079
Dolphin	MODERN SPECIES	269													SESN2 (ENSTTRG00000001847) #18	MED18 (ENSTTRG00000001851) #19	PHACTR4 (ENSTTRG00000001852) #21	RCC1 (ENSTTRG00000001853) #22	TRNAU1AP (ENSTTRG00000001854) #23	RAB42 (ENSTTRG00000001855) #24
Odontoceti_b	ANCESTRAL SPECIES		ENSGT00940000160073	ENSGT01000000214440.A.a.b.a.a #7	ENSGT00940000156115 #8	ENSGT00530000063770.c.a #9	ENSGT00390000010045.i #10	ENSGT00950000183182.a.a #11	ENSGT01090000260093.b #12	ENSGT00950000182978.B #13	ENSGT01060000248589.D	ENSGT00390000012569.a #16	ENSGT00390000006264 #17	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00390000010888.c.a.b	ENSGT00940000157582.c #21	ENSGT00940000155543 #22	ENSGT00940000156139 #23	ENSGT00940000162094 #24	ENSGT00390000002144.e.a #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761	ENSGT00940000157669	ENSGT00940000157833	ENSGT00530000063698.b	ENSGT00940000156213	ENSGT00940000156592	ENSGT00940000157151	ENSGT00940000159638	ENSGT00940000153446.a.b	ENSGT00940000160209.f	ENSGT00940000158079
Monodontidae	ANCESTRAL SPECIES		ENSGT00940000156115 #8	ENSGT00530000063770.c.a #9	ENSGT00390000010045.i #10	ENSGT00950000183182.a.a #11	ENSGT01090000260093.b #12	ENSGT00950000182978.B #13	ENSGT00910000147719.b	ENSGT00390000006051.a.a.b	ENSGT01060000248589.D	ENSGT00390000012569.a #16	ENSGT00390000006264 #17	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00390000010888.c.a.b	ENSGT00940000157582.c #21	ENSGT00940000155543 #22	ENSGT00940000156139 #23	ENSGT00940000162094 #24	ENSGT00390000002144.e.a #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761	ENSGT00940000157669	ENSGT00940000157833	ENSGT00530000063698.b	ENSGT00940000156213	ENSGT00940000156592	ENSGT00940000157151	ENSGT00390000014084.ab.b.b	ENSGT00940000159638	ENSGT00940000153446.a.b	ENSGT00940000160209.f
Narwhal	MODERN SPECIES	304	ENSMMNG00015005158 #7	PPP1R8 (ENSMMNG00015005107) #8	THEMIS2 (ENSMMNG00015013027) #9	ENSMMNG00015012999 #10	SMPDL3B (ENSMMNG00015012953) #11	XKR8 (ENSMMNG00015012929) #12	EYA3 (ENSMMNG00015012893) #13	ENSMMNG00015012858	ENSMMNG00015012849	DNAJC8 (ENSMMNG00015012830) #16	ATP5IF1 (ENSMMNG00015012814) #17	SESN2 (ENSMMNG00015012796) #18	MED18 (ENSMMNG00015012782) #19	ENSMMNG00015012774	PHACTR4 (ENSMMNG00015012730) #21	RCC1 (ENSMMNG00015012687) #22	TRNAU1AP (ENSMMNG00015012660) #23	RAB42 (ENSMMNG00015012631) #24	ENSMMNG00015012619 #25	GMEB1 (ENSMMNG00015012601) #26	YTHDF2 (ENSMMNG00015012587)	OPRD1 (ENSMMNG00015012577)	EPB41 (ENSMMNG00015012190)	TMEM200B (ENSMMNG00015012047)	SRSF4 (ENSMMNG00015012035)	MECR (ENSMMNG00015012012)	PTPRU (ENSMMNG00015011976)	ENSMMNG00015011944	MATN1 (ENSMMNG00015011923)	LAPTM5 (ENSMMNG00015011902)	SDC3 (ENSMMNG00015011885)
Beluga whale	MODERN SPECIES	51	PPP1R8 (ENSDLEG00000013472) #8	THEMIS2 (ENSDLEG00000013466) #9	ENSDLEG00000013454 #10	SMPDL3B (ENSDLEG00000013442) #11	XKR8 (ENSDLEG00000013433) #12	EYA3 (ENSDLEG00000013376) #13	ENSDLEG00000013366	ENSDLEG00000013354	PTAFR (ENSDLEG00000013349)	DNAJC8 (ENSDLEG00000013340) #16	ATPIF1 (ENSDLEG00000013329) #17	SESN2 (ENSDLEG00000013321) #18	MED18 (ENSDLEG00000013313) #19	ENSDLEG00000013302	PHACTR4 (ENSDLEG00000013189) #21	RCC1 (ENSDLEG00000013058) #22	ENSDLEG00000013043 #23	ENSDLEG00000013017 #23	RAB42 (ENSDLEG00000012981) #24	TAF12 (ENSDLEG00000012969) #25	GMEB1 (ENSDLEG00000012947) #26	YTHDF2 (ENSDLEG00000012942)	OPRD1 (ENSDLEG00000012901)	EPB41 (ENSDLEG00000012645)	TMEM200B (ENSDLEG00000012611)	SRSF4 (ENSDLEG00000012596)	MECR (ENSDLEG00000012578)	PTPRU (ENSDLEG00000009121)	ENSDLEG00000008516
Vaquita	MODERN SPECIES		FAM76A (ENSPSNG00000005498)	ENSPSNG00000005541 #7	PPP1R8 (ENSPSNG00000005558) #8	THEMIS2 (ENSPSNG00000005589) #9	PDCD2 (ENSPSNG00000005696)	RPA2 (ENSPSNG00000005730) #10	SMPDL3B (ENSPSNG00000005806) #11	XKR8 (ENSPSNG00000005907) #12	EYA3 (ENSPSNG00000005970) #13	PTAFR (ENSPSNG00000006046)	DNAJC8 (ENSPSNG00000006061) #16	ATP5IF1 (ENSPSNG00000006090) #17	SESN2 (ENSPSNG00000006125) #18	MED18 (ENSPSNG00000006165) #19	PHACTR4 (ENSPSNG00000006219) #21	RCC1 (ENSPSNG00000006328) #22	TRNAU1AP (ENSPSNG00000006381) #23	RAB42 (ENSPSNG00000006443) #24	TAF12 (ENSPSNG00000006469) #25	GMEB1 (ENSPSNG00000006512) #26	YTHDF2 (ENSPSNG00000006564)	ENSPSNG00000006599	OPRD1 (ENSPSNG00000006621)	EPB41 (ENSPSNG00000006874)	TMEM200B (ENSPSNG00000007470)	SRSF4 (ENSPSNG00000007490)	MECR (ENSPSNG00000007523)	PTPRU (ENSPSNG00000007606)	ENSPSNG00000007731	MATN1 (ENSPSNG00000007748)	LAPTM5 (ENSPSNG00000007821)
Sperm whale	MODERN SPECIES	14	FAM76A (ENSPCTG00005004465)	STX12 (ENSPCTG00005004417) #7	PPP1R8 (ENSPCTG00005004336) #8	THEMIS2 (ENSPCTG00005004296) #9	RPA2 (ENSPCTG00005004266) #10	SMPDL3B (ENSPCTG00005004166) #11	XKR8 (ENSPCTG00005004138) #12	EYA3 (ENSPCTG00005004066) #13	PTAFR (ENSPCTG00005004040)	DNAJC8 (ENSPCTG00005004028) #16	ATP5IF1 (ENSPCTG00005004015) #17	SESN2 (ENSPCTG00005003993) #18	MED18 (ENSPCTG00005003980) #19	ENSPCTG00005003963	PHACTR4 (ENSPCTG00005003932) #21	RCC1 (ENSPCTG00005003903) #22	TRNAU1AP (ENSPCTG00005003881) #23	RAB42 (ENSPCTG00005003870) #24	TAF12 (ENSPCTG00005003863) #25	GMEB1 (ENSPCTG00005003843) #26	YTHDF2 (ENSPCTG00005003821)	OPRD1 (ENSPCTG00005003815)	EPB41 (ENSPCTG00005002116)	TMEM200B (ENSPCTG00005001822)	SRSF4 (ENSPCTG00005001813)	MECR (ENSPCTG00005001799)	ENSPCTG00005001715	ENSPCTG00005001668	MATN1 (ENSPCTG00005001649)	LAPTM5 (ENSPCTG00005001632)	ENSPCTG00005001624
Blue whale	MODERN SPECIES		STX12 (ENSBMSG00010000024) #7	PPP1R8 (ENSBMSG00010000031) #8	THEMIS2 (ENSBMSG00010000049) #9	ENSBMSG00010000072 #10	SMPDL3B (ENSBMSG00010000155) #11	XKR8 (ENSBMSG00010000229) #12	EYA3 (ENSBMSG00010000306) #13	PTAFR (ENSBMSG00010000435)	ENSBMSG00010000451	ENSBMSG00010000494	SESN2 (ENSBMSG00010000531) #18	ENSBMSG00010000561	MED18 (ENSBMSG00010000572) #19	ENSBMSG00010000590	ENSBMSG00010000628 #21	RCC1 (ENSBMSG00010000732) #22	TRNAU1AP (ENSBMSG00010000779) #23	ENSBMSG00010000789	RAB42 (ENSBMSG00010000837) #24	ENSBMSG00010000849 #25	GMEB1 (ENSBMSG00010000875) #26	YTHDF2 (ENSBMSG00010000900)	OPRD1 (ENSBMSG00010000919)	EPB41 (ENSBMSG00010001365)	TMEM200B (ENSBMSG00010004052)	SRSF4 (ENSBMSG00010004066)	MECR (ENSBMSG00010004086)	ENSBMSG00010004108	PTPRU (ENSBMSG00010004130)	ENSBMSG00010004192	MATN1 (ENSBMSG00010004210)
Pecora	ANCESTRAL SPECIES	16	ENSGT00940000163178	ENSGT00940000160073	ENSGT01000000214440.A.a.b.a #7	ENSGT00940000156115 #8	ENSGT00530000063770.c.a #9	ENSGT00390000010045 #10	ENSGT00950000183182.a.a #11	ENSGT01090000260093.b #12	ENSGT00950000182978.B #13	ENSGT01060000248589.D	ENSGT00390000012569.a #16	ENSGT00390000006264.c #17	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #23	ENSGT00940000162094 #24	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761	ENSGT00940000157669	ENSGT00940000157833	ENSGT00530000063698.b	ENSGT00940000156213	ENSGT00940000156592	ENSGT00940000157151	ENSGT00940000159638	ENSGT00940000153446.a.b	ENSGT00940000160209.f	ENSGT00940000158079
Percora_a	ANCESTRAL SPECIES	5	ENSGT00940000163178	ENSGT00940000160073	ENSGT01000000214440.A.a.b.a #7	ENSGT00940000156115 #8	ENSGT00530000063770.c.a #9	ENSGT00390000010045 #10	ENSGT00950000183182.a.a #11	ENSGT01090000260093.b #12	ENSGT00950000182978.B #13	ENSGT01060000248589.D	ENSGT00390000012569.a #16	ENSGT00390000006264.c #17	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #23	ENSGT00940000162094 #24	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761	ENSGT00940000157669	ENSGT00940000157833	ENSGT00530000063698.b	ENSGT00940000156213	ENSGT00940000156592	ENSGT00940000157151	ENSGT00940000159638	ENSGT00940000153446.a.b	ENSGT00940000160209.f	ENSGT00940000158079
Bovidae	ANCESTRAL SPECIES	8	ENSGT00940000163178	ENSGT00940000160073	ENSGT01000000214440.A.a.b.a #7	ENSGT00940000156115 #8	ENSGT00530000063770.c.a #9	ENSGT00390000010045.k #10	ENSGT00950000183182.a.a #11	ENSGT01090000260093.b #12	ENSGT00950000182978.B #13	ENSGT01060000248589.D	ENSGT00390000012569.a #16	ENSGT00390000006264.c #17	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #23	ENSGT00940000162094 #24	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761	ENSGT00940000157669	ENSGT00940000157833	ENSGT00530000063698.b	ENSGT00940000156213	ENSGT00940000156592	ENSGT00940000157151	ENSGT00940000159638	ENSGT00940000153446.a.b	ENSGT00940000160209.f	ENSGT00940000158079
Caprinae	ANCESTRAL SPECIES	5	ENSGT00940000163178	ENSGT00940000160073	ENSGT01000000214440.A.a.b.a #7	ENSGT00940000156115 #8	ENSGT00530000063770.c.a #9	ENSGT00390000010045.l #10	ENSGT00950000183182.a.a #11	ENSGT01090000260093.b #12	ENSGT00950000182978.B #13	ENSGT01060000248589.D	ENSGT00390000012569.a #16	ENSGT00390000006264.c #17	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #23	ENSGT00940000162094 #24	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761	ENSGT00940000157669	ENSGT00940000157833	ENSGT00530000063698.b	ENSGT00940000156213	ENSGT00940000156592	ENSGT00940000157151	ENSGT00940000159638	ENSGT00940000153446.a.b	ENSGT00940000160209.f	ENSGT00940000158079
Goat	MODERN SPECIES	11	IFI6 (ENSCHIG00000017858)	FAM76A (ENSCHIG00000010125)	STX12 (ENSCHIG00000024442) #7	PPP1R8 (ENSCHIG00000024272) #8	THEMIS2 (ENSCHIG00000012658) #9	RPA2 (ENSCHIG00000018966) #10	SMPDL3B (ENSCHIG00000014109) #11	XKR8 (ENSCHIG00000026584) #12	EYA3 (ENSCHIG00000026543) #13	PTAFR (ENSCHIG00000012038)	ENSCHIG00000026518 #16	ATP5IF1 (ENSCHIG00000007574) #17	SESN2 (ENSCHIG00000023698) #18	MED18 (ENSCHIG00000020083) #19	PHACTR4 (ENSCHIG00000017217) #21	RCC1 (ENSCHIG00000026944) #22	TRNAU1AP (ENSCHIG00000023215) #23	ENSCHIG00000015067	RAB42 (ENSCHIG00000023710) #24	TAF12 (ENSCHIG00000002588) #25	GMEB1 (ENSCHIG00000000629) #26	YTHDF2 (ENSCHIG00000022985)	OPRD1 (ENSCHIG00000016495)	EPB41 (ENSCHIG00000014338)	TMEM200B (ENSCHIG00000005464)	SRSF4 (ENSCHIG00000022096)	MECR (ENSCHIG00000007022)	PTPRU (ENSCHIG00000018867)	MATN1 (ENSCHIG00000008350)	LAPTM5 (ENSCHIG00000013968)	ENSCHIG00000015655
Rambouillet Sheep	MODERN SPECIES	11	IFI6 (ENSOARG00020021024)	FAM76A (ENSOARG00020020517)	STX12 (ENSOARG00020020460) #7	PPP1R8 (ENSOARG00020020388) #8	THEMIS2 (ENSOARG00020020351) #9	RPA2 (ENSOARG00020020276) #10	SMPDL3B (ENSOARG00020020126) #11	XKR8 (ENSOARG00020020079) #12	EYA3 (ENSOARG00020019284) #13	ENSOARG00020019236	DNAJC8 (ENSOARG00020019115) #16	ATP5IF1 (ENSOARG00020019017) #17	SESN2 (ENSOARG00020018898) #18	MED18 (ENSOARG00020018864) #19	PHACTR4 (ENSOARG00020018486) #21	RCC1 (ENSOARG00020018293) #22	TRNAU1AP (ENSOARG00020018238) #23	RAB42 (ENSOARG00020018146) #24	ENSOARG00020018108 #25	ENSOARG00020018054	GMEB1 (ENSOARG00020017971) #26	YTHDF2 (ENSOARG00020017875)	OPRD1 (ENSOARG00020017834)	EPB41 (ENSOARG00020015888)	TMEM200B (ENSOARG00020015783)	SRSF4 (ENSOARG00020015684)	MECR (ENSOARG00020015587)	PTPRU (ENSOARG00020014061)	MATN1 (ENSOARG00020013966)	LAPTM5 (ENSOARG00020013915)	SDC3 (ENSOARG00020013780)
Bovinae	ANCESTRAL SPECIES	5	ENSGT00940000160073	ENSGT01000000214440.A.a.b.a #7	ENSGT00940000156115 #8	ENSGT00530000063770.c.a #9	ENSGT00390000010045.k.b #10	ENSGT00950000183182.a.a #11	ENSGT01090000260093.b #12	ENSGT00950000182978.B #13	ENSGT01060000248589.D	ENSGT00390000012569.a #16	ENSGT00390000006264.c #17	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00390000006707.r.h	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #23	ENSGT00940000162094 #24	ENSGT00390000002144.i.a #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761	ENSGT00940000157669	ENSGT00940000157833	ENSGT00530000063698.b	ENSGT00940000156213	ENSGT00940000156592	ENSGT00940000157151	ENSGT00940000159638	ENSGT00940000153446.a.b	ENSGT00940000160209.f	ENSGT00940000158079
Bos	ANCESTRAL SPECIES	6	ENSGT01000000214440.A.a.b.a #7	ENSGT00940000156115 #8	ENSGT00530000063770.c.a #9	ENSGT00390000010045.k.b #10	ENSGT00950000183182.a.a #11	ENSGT01090000260093.b #12	ENSGT00950000182978.B #13	ENSGT01060000248589.D	ENSGT00390000012569.a #16	ENSGT00390000006264.c #17	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00390000015797.d.r.b.b	ENSGT00390000006707.r.h	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #23	ENSGT00940000162094 #24	ENSGT00390000002144.j #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761	ENSGT00940000157669	ENSGT00940000157833	ENSGT00530000063698.b	ENSGT00940000156213	ENSGT00940000156592	ENSGT00940000157151	ENSGT00940000159638	ENSGT00940000153446.a.b	ENSGT00940000160209.f	ENSGT00940000158079
Bos_b	ANCESTRAL SPECIES	20	ENSGT01000000214440.A.a.b.a #7	ENSGT00940000156115 #8	ENSGT00530000063770.c.a #9	ENSGT00390000010045.k.b #10	ENSGT00950000183182.a.a #11	ENSGT01090000260093.b #12	ENSGT00950000182978.B #13	ENSGT01060000248589.D	ENSGT00390000012569.a #16	ENSGT00390000006264.c #17	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00390000015797.d.r.b.b	ENSGT00390000006707.r.h	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #23	ENSGT00920000150755	ENSGT01100000263480.a.a.b.b.b.a.a.a.a.a.b.a.a.b.b.a.a.a.a.b.b	ENSGT00940000162094 #24	ENSGT00390000002144.j #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761	ENSGT00940000157669	ENSGT00940000157833	ENSGT00530000063698.b	ENSGT00940000156213	ENSGT00940000156592	ENSGT00940000157151	ENSGT00390000007797.a.a	ENSGT00940000159638
Cow	MODERN SPECIES	11	STX12 (ENSBTAG00000001192) #7	PPP1R8 (ENSBTAG00000003866) #8	THEMIS2 (ENSBTAG00000006223) #9	RPA2 (ENSBTAG00000006225) #10	SMPDL3B (ENSBTAG00000012997) #11	XKR8 (ENSBTAG00000008800) #12	EYA3 (ENSBTAG00000043989) #13	PTAFR (ENSBTAG00000027051)	DNAJC8 (ENSBTAG00000018385) #16	ATP5IF1 (ENSBTAG00000006342) #17	SESN2 (ENSBTAG00000002363) #18	MED18 (ENSBTAG00000002678) #19	ENSBTAG00000040210	ENSBTAG00000003676	PHACTR4 (ENSBTAG00000002727) #21	RCC1 (ENSBTAG00000003788) #22	TRNAU1AP (ENSBTAG00000010393) #23	ENSBTAG00000048228	ENSBTAG00000052614	RAB42 (ENSBTAG00000021525) #24	TAF12 (ENSBTAG00000026660) #25	GMEB1 (ENSBTAG00000001160) #26	YTHDF2 (ENSBTAG00000015771)	OPRD1 (ENSBTAG00000003202)	EPB41 (ENSBTAG00000006667)	TMEM200B (ENSBTAG00000047524)	SRSF4 (ENSBTAG00000013309)	MECR (ENSBTAG00000017253)	PTPRU (ENSBTAG00000012848)	ENSBTAG00000053024	MATN1 (ENSBTAG00000003479)
Hybrid Bos Indicus	MODERN SPECIES	11	PPP1R8 (ENSBIXG00005000665) #8	THEMIS2 (ENSBIXG00005009901) #9	ENSBIXG00005009925 #10	SMPDL3B (ENSBIXG00005009947) #11	XKR8 (ENSBIXG00005005690) #12	EYA3 (ENSBIXG00005000796) #13	PTAFR (ENSBIXG00005000806)	ENSBIXG00005010236	DNAJC8 (ENSBIXG00005010254) #16	ATP5IF1 (ENSBIXG00005000831) #17	SESN2 (ENSBIXG00005000853) #18	MED18 (ENSBIXG00005010361) #19	ENSBIXG00005010380	ENSBIXG00005010390	PHACTR4 (ENSBIXG00005000752) #21	RCC1 (ENSBIXG00005010509) #22	TRNAU1AP (ENSBIXG00005000707) #23	ENSBIXG00005010590	RAB42 (ENSBIXG00005000908) #24	TAF12 (ENSBIXG00005000915) #25	GMEB1 (ENSBIXG00005010684) #26	YTHDF2 (ENSBIXG00005000620)	OPRD1 (ENSBIXG00005010747)	EPB41 (ENSBIXG00005010985)	TMEM200B (ENSBIXG00005007469)	SRSF4 (ENSBIXG00005011082)	MECR (ENSBIXG00005007751)	PTPRU (ENSBIXG00005001071)	ENSBIXG00005011338	MATN1 (ENSBIXG00005001095)	LAPTM5 (ENSBIXG00005011398)
Bos_a	ANCESTRAL SPECIES	4	ENSGT00940000156115 #8	ENSGT00530000063770.c.a #9	ENSGT00390000010045.k.b #10	ENSGT00950000183182.a.a #11	ENSGT01090000260093.b #12	ENSGT00950000182978.B #13	ENSGT00910000147719.b	ENSGT01060000248589.D	ENSGT00390000012569.a #16	ENSGT00390000006264.c #17	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00390000015797.d.r.b.b	ENSGT00390000006707.r.h	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #23	ENSGT00940000162094 #24	ENSGT00390000002144.j #25	ENSGT00410000025596.a.b #26	ENSGT01100000263839	ENSGT00940000156761	ENSGT00940000157669	ENSGT00940000157833	ENSGT00530000063698.b	ENSGT00940000156213	ENSGT00940000156592	ENSGT00940000157151	ENSGT00940000159638	ENSGT00940000153446.a.b	ENSGT00940000160209.f
Domestic yak	MODERN SPECIES	11	THEMIS2 (ENSBGRG00000012596) #9	ENSBGRG00000012694 #9	ENSBGRG00000012726 #10	SMPDL3B (ENSBGRG00000012884) #11	XKR8 (ENSBGRG00000013224) #12	EYA3 (ENSBGRG00000013293) #13	ENSBGRG00000013691	PTAFR (ENSBGRG00000013703)	DNAJC8 (ENSBGRG00000013806) #16	ATP5IF1 (ENSBGRG00000013915) #17	SESN2 (ENSBGRG00000014010) #18	MED18 (ENSBGRG00000014253) #19	ENSBGRG00000014301	PHACTR4 (ENSBGRG00000014359) #21	ENSBGRG00000014684	RCC1 (ENSBGRG00000014760) #22	TRNAU1AP (ENSBGRG00000014936) #23	RAB42 (ENSBGRG00000015211) #24	TAF12 (ENSBGRG00000015289) #25	GMEB1 (ENSBGRG00000015362) #26	ENSBGRG00000015523	ENSBGRG00000015547	YTHDF2 (ENSBGRG00000015573)	OPRD1 (ENSBGRG00000015656)	EPB41 (ENSBGRG00000016000)	TMEM200B (ENSBGRG00000021675)	SRSF4 (ENSBGRG00000021699)	MECR (ENSBGRG00000021789)	PTPRU (ENSBGRG00000021855)	MATN1 (ENSBGRG00000022057)	LAPTM5 (ENSBGRG00000022099)
Wild yak	MODERN SPECIES	762	PPP1R8 (ENSBMUG00000017340) #8	THEMIS2 (ENSBMUG00000017367) #9	ENSBMUG00000017390 #10	SMPDL3B (ENSBMUG00000017413) #11	XKR8 (ENSBMUG00000017423) #12	EYA3 (ENSBMUG00000017528) #13	ENSBMUG00000017537	PTAFR (ENSBMUG00000017560)	DNAJC8 (ENSBMUG00000017600) #16	ATP5IF1 (ENSBMUG00000017659) #17	SESN2 (ENSBMUG00000017686) #18	MED18 (ENSBMUG00000017697) #19	ENSBMUG00000017712	ENSBMUG00000017722	PHACTR4 (ENSBMUG00000017790) #21	RCC1 (ENSBMUG00000017936) #22	RAB42 (ENSBMUG00000018007) #24
American bison	MODERN SPECIES	3363	STX12 (ENSBBBG00000013509) #7	PPP1R8 (ENSBBBG00000013499) #8	THEMIS2 (ENSBBBG00000013489) #9	ENSBBBG00000013481 #10	SMPDL3B (ENSBBBG00000013467) #11	XKR8 (ENSBBBG00000013441) #12	EYA3 (ENSBBBG00000013430) #13	PTAFR (ENSBBBG00000002716)	ENSBBBG00000013333	DNAJC8 (ENSBBBG00000001607) #16	ATP5IF1 (ENSBBBG00000013307) #17	SESN2 (ENSBBBG00000013292) #18	MED18 (ENSBBBG00000013284) #19	ENSBBBG00000013274	PHACTR4 (ENSBBBG00000013267) #21	RCC1 (ENSBBBG00000002666) #22	TRNAU1AP (ENSBBBG00000013165) #23	RAB42 (ENSBBBG00000013149) #24	ENSBBBG00000013138 #25	GMEB1 (ENSBBBG00000013129) #26	YTHDF2 (ENSBBBG00000001673)	OPRD1 (ENSBBBG00000001678)	EPB41 (ENSBBBG00000008324)	TMEM200B (ENSBBBG00000002306)	SRSF4 (ENSBBBG00000012247)	MECR (ENSBBBG00000012215)	PTPRU (ENSBBBG00000002295)
Siberian musk deer	MODERN SPECIES	353															PHACTR4 (ENSMMSG00000017698) #21	RCC1 (ENSMMSG00000017577) #22	TRNAU1AP (ENSMMSG00000017547) #23	RAB42 (ENSMMSG00000017511) #24	TAF12 (ENSMMSG00000017482) #25	GMEB1 (ENSMMSG00000017411) #26	YTHDF2 (ENSMMSG00000017379)	OPRD1 (ENSMMSG00000017354)	EPB41 (ENSMMSG00000009727)	TMEM200B (ENSMMSG00000009448)	SRSF4 (ENSMMSG00000009418)	MECR (ENSMMSG00000009362)	PTPRU (ENSMMSG00000009248)	ENSMMSG00000009209	MATN1 (ENSMMSG00000009155)	LAPTM5 (ENSMMSG00000009109)	SDC3 (ENSMMSG00000009056)
Yarkand deer	DUPLICATION
Yarkand deer	MODERN SPECIES	31	PPP1R8 (ENSCHYG00000002883) #8	ENSCHYG00000002910	THEMIS2 (ENSCHYG00000002918) #9	RPA2 (ENSCHYG00000002933) #10	SMPDL3B (ENSCHYG00000002959) #11	XKR8 (ENSCHYG00000002982) #12	EYA3 (ENSCHYG00000003037) #13	DNAJC8 (ENSCHYG00000003338) #16	ENSCHYG00000003358 #17	SESN2 (ENSCHYG00000003372) #18	MED18 (ENSCHYG00000003395) #19	ENSCHYG00000003407	PHACTR4 (ENSCHYG00000003443) #21	ENSCHYG00000003581	ENSCHYG00000003590	ENSCHYG00000003628 #22	ENSCHYG00000003649 #23	RAB42 (ENSCHYG00000003707) #24	TAF12 (ENSCHYG00000003724) #25	GMEB1 (ENSCHYG00000005760) #26	YTHDF2 (ENSCHYG00000005845)	OPRD1 (ENSCHYG00000005893)	EPB41 (ENSCHYG00000006045)	TMEM200B (ENSCHYG00000006532)	SRSF4 (ENSCHYG00000006560)	MECR (ENSCHYG00000006636)	PTPRU (ENSCHYG00000006797)	MATN1 (ENSCHYG00000006958)	LAPTM5 (ENSCHYG00000006997)	SDC3 (ENSCHYG00000007038)	PUM1 (ENSCHYG00000007161)
Yarkand deer	MODERN SPECIES	25	SMIM18 (ENSCHYG00000023176)	ENSCHYG00000023201	UBXN8 (ENSCHYG00000023355)	PPP2CB (ENSCHYG00000014632)	TEX15 (ENSCHYG00000014679)	PURG (ENSCHYG00000014784)	ENSCHYG00000014838	WRN (ENSCHYG00000014889)	NRG1 (ENSCHYG00000015541)	FUT10 (ENSCHYG00000018055)	MAK16 (ENSCHYG00000018167)	TTI2 (ENSCHYG00000018334)	ENSCHYG00000018522	DUSP26 (ENSCHYG00000018592)	ENSCHYG00000018716	ENSCHYG00000018760 #22	ENSCHYG00000018822	UNC5D (ENSCHYG00000018964)	KCNU1 (ENSCHYG00000021033)	ZNF703 (ENSCHYG00000021337)	ERLIN2 (ENSCHYG00000021368)	ENSCHYG00000021435	ADGRA2 (ENSCHYG00000021519)	BRF2 (ENSCHYG00000021983)	RAB11FIP1 (ENSCHYG00000022023)	GOT1L1 (ENSCHYG00000022122)	ADRB3 (ENSCHYG00000022213)	EIF4EBP1 (ENSCHYG00000022296)	ASH2L (ENSCHYG00000022353)	STAR (ENSCHYG00000022561)	LSM1 (ENSCHYG00000022614)
Camelidae	ANCESTRAL SPECIES	3	ENSGT00940000163178	ENSGT00940000160073	ENSGT01000000214440.A.a.b.a #7	ENSGT00940000156115 #8	ENSGT00530000063770.c.a #9	ENSGT00390000010045 #10	ENSGT00950000183182.a.a #11	ENSGT01090000260093.b #12	ENSGT00950000182978.B #13	ENSGT01060000248589.D	ENSGT00390000012569.a #16	ENSGT00390000006264 #17	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #23	ENSGT00940000162094 #24	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761	ENSGT00940000157669	ENSGT00940000157833	ENSGT00530000063698.b	ENSGT00940000156213	ENSGT00950000185227	ENSGT00940000156592	ENSGT00940000157151	ENSGT00940000159638	ENSGT00940000153446.a.b	ENSGT00940000160209.f
Arabian camel	MODERN SPECIES	4	IFI6 (ENSCDRG00005007894)	FAM76A (ENSCDRG00005007930)	STX12 (ENSCDRG00005008126) #7	PPP1R8 (ENSCDRG00005008155) #8	THEMIS2 (ENSCDRG00005008258) #9	RPA2 (ENSCDRG00005008368) #10	SMPDL3B (ENSCDRG00005008566) #11	XKR8 (ENSCDRG00005008698) #12	EYA3 (ENSCDRG00005008747) #13	PTAFR (ENSCDRG00005009309)	DNAJC8 (ENSCDRG00005009348) #16	ATP5IF1 (ENSCDRG00005009468) #17	SESN2 (ENSCDRG00005009534) #18	MED18 (ENSCDRG00005009647) #19	PHACTR4 (ENSCDRG00005009702) #21	RCC1 (ENSCDRG00005009898) #22	TRNAU1AP (ENSCDRG00005010166) #23	RAB42 (ENSCDRG00005006688) #24	TAF12 (ENSCDRG00005006753) #25	GMEB1 (ENSCDRG00005006797) #26	YTHDF2 (ENSCDRG00005006917)	OPRD1 (ENSCDRG00005006966)	EPB41 (ENSCDRG00005007158)	TMEM200B (ENSCDRG00005014903)	SRSF4 (ENSCDRG00005014921)	ENSCDRG00005014957	MECR (ENSCDRG00005014978)	PTPRU (ENSCDRG00005015095)	MATN1 (ENSCDRG00005015422)	LAPTM5 (ENSCDRG00005015458)	SDC3 (ENSCDRG00005015511)
Alpaca	MODERN SPECIES	251												DNAJC8 (ENSVPAG00000006767) #16	SESN2 (ENSVPAG00000006769) #18	MED18 (ENSVPAG00000006773) #19	PHACTR4 (ENSVPAG00000006775) #21	RCC1 (ENSVPAG00000006776) #22	TRNAU1AP (ENSVPAG00000006778) #23	TAF12 (ENSVPAG00000006779) #25	ENSVPAG00000006780	GMEB1 (ENSVPAG00000006781) #26	YTHDF2 (ENSVPAG00000006783)
Laurasiatheria_b	ANCESTRAL SPECIES		ENSGT00940000163178	ENSGT00940000160073	ENSGT01000000214440.A.a.b.a #7	ENSGT00940000156115 #8	ENSGT00530000063770.c.a #9	ENSGT00390000010045 #10	ENSGT00950000183182.a.a #11	ENSGT01090000260093.b #12	ENSGT00950000182978.B #13	ENSGT01060000248589.D	ENSGT00390000012569.a #16	ENSGT00390000006264 #17	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #23	ENSGT00940000162094 #24	ENSGT00940000164873	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT01100000263839	ENSGT00940000156761	ENSGT00940000157669	ENSGT00940000157833	ENSGT00530000063698.b	ENSGT00940000156213	ENSGT00950000185227	ENSGT00940000156592	ENSGT00960000190201	ENSGT00940000157151
Carnivora	ANCESTRAL SPECIES	1	ENSGT00940000163178	ENSGT00940000160073	ENSGT01000000214440.A.a.b.a #7	ENSGT00940000156115 #8	ENSGT00530000063770.c.a #9	ENSGT00390000010045 #10	ENSGT00950000183182.a.a #11	ENSGT01090000260093.b #12	ENSGT00950000182978.B #13	ENSGT01060000248589.D	ENSGT00390000012569.a #16	ENSGT00390000006264 #17	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #23	ENSGT00940000162094 #24	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT01100000263839	ENSGT00940000156761	ENSGT00940000157669	ENSGT00940000157833	ENSGT00530000063698.b	ENSGT00940000156213	ENSGT00950000185227	ENSGT00940000156592	ENSGT00960000190201	ENSGT00940000157151	ENSGT00940000159638
Caniformia	ANCESTRAL SPECIES	2	ENSGT00940000163178	ENSGT00940000160073	ENSGT01000000214440.A.a.b.a #7	ENSGT00940000156115 #8	ENSGT00530000063770.c.a #9	ENSGT00390000010045 #10	ENSGT00950000183182.a.a #11	ENSGT01090000260093.b #12	ENSGT00950000182978.B #13	ENSGT01060000248589.D	ENSGT00390000012569.a #16	ENSGT00390000006264 #17	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #23	ENSGT00940000162094 #24	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT01100000263839	ENSGT00940000156761	ENSGT00940000157669	ENSGT00940000157833	ENSGT00530000063698.b	ENSGT00940000156213	ENSGT00950000185227	ENSGT00940000156592	ENSGT00960000190201	ENSGT00940000157151	ENSGT00940000159638
Caniformia_b	ANCESTRAL SPECIES	1	ENSGT00940000163178	ENSGT00940000160073	ENSGT01000000214440.A.a.b.a #7	ENSGT00940000156115 #8	ENSGT00530000063770.c.a #9	ENSGT00390000010045 #10	ENSGT00950000183182.a.a #11	ENSGT01090000260093.b #12	ENSGT00950000182978.B #13	ENSGT01060000248589.D	ENSGT00390000012569.a #16	ENSGT00390000006264 #17	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #23	ENSGT00940000162094 #24	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761	ENSGT00940000157669	ENSGT00940000157833	ENSGT00530000063698.b	ENSGT00940000156213	ENSGT00940000156592	ENSGT00960000190201	ENSGT00940000157151	ENSGT00940000159638	ENSGT00940000153446.a.b	ENSGT00940000160209
Mustelinae	ANCESTRAL SPECIES		ENSGT00940000163178	ENSGT00940000160073	ENSGT01000000214440.A.a.b.a #7	ENSGT00940000156115 #8	ENSGT00530000063770.c.a #9	ENSGT00390000010045 #10	ENSGT00950000183182.a.a #11	ENSGT01090000260093.b #12	ENSGT00950000182978.B #13	ENSGT01060000248589.D	ENSGT00390000012569.a #16	ENSGT00390000006264 #17	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #23	ENSGT00940000162094 #24	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761	ENSGT00940000157669	ENSGT00940000157833	ENSGT00530000063698.b	ENSGT00940000156213	ENSGT00940000156592	ENSGT00940000157151	ENSGT00940000159638	ENSGT00940000153446.a.b	ENSGT00940000160209	ENSGT00940000158079
Ferret	MODERN SPECIES	167	ENSMPUG00000015599	FAM76A (ENSMPUG00000015579)	STX12 (ENSMPUG00000015578) #7	PPP1R8 (ENSMPUG00000015577) #8	THEMIS2 (ENSMPUG00000015575) #9	RPA2 (ENSMPUG00000015563) #10	SMPDL3B (ENSMPUG00000015553) #11	XKR8 (ENSMPUG00000015551) #12	EYA3 (ENSMPUG00000015548) #13	PTAFR (ENSMPUG00000018809)	DNAJC8 (ENSMPUG00000015540) #16	ATP5IF1 (ENSMPUG00000015536) #17	SESN2 (ENSMPUG00000015535) #18	MED18 (ENSMPUG00000015531) #19	PHACTR4 (ENSMPUG00000015529) #21	RCC1 (ENSMPUG00000015528) #22	TRNAU1AP (ENSMPUG00000015511) #23	RAB42 (ENSMPUG00000015508) #24	TAF12 (ENSMPUG00000015506) #25	GMEB1 (ENSMPUG00000015503) #26	YTHDF2 (ENSMPUG00000015501)	ENSMPUG00000015500	OPRD1 (ENSMPUG00000015498)	EPB41 (ENSMPUG00000015472)	SRSF4 (ENSMPUG00000015470)	MECR (ENSMPUG00000015468)	PTPRU (ENSMPUG00000015467)	ENSMPUG00000015464	MATN1 (ENSMPUG00000015461)	LAPTM5 (ENSMPUG00000015459)	SDC3 (ENSMPUG00000015458)
American mink	MODERN SPECIES	9	FAM76A (ENSNVIG00000023798)	STX12 (ENSNVIG00000023800) #7	PP1R8 (ENSNVIG00000023801) #8	THEMIS2 (ENSNVIG00000023803) #9	RPA2 (ENSNVIG00000023804) #10	SMPDL3B (ENSNVIG00000023805) #11	XKR8 (ENSNVIG00000023806) #12	EYA3 (ENSNVIG00000023808) #13	PTAFR (ENSNVIG00000023812)	DNAJC8 (ENSNVIG00000023813) #16	ATP5IF1 (ENSNVIG00000023815) #17	SESN2 (ENSNVIG00000023817) #18	MED18 (ENSNVIG00000023819) #19	PHACTR4 (ENSNVIG00000023821) #21	ENSNVIG00000023825	RCC1 (ENSNVIG00000023830) #22	TRNAU1AP (ENSNVIG00000023833) #23	RAB42 (ENSNVIG00000023841) #24	TAF12 (ENSNVIG00000023844) #25	GMEB1 (ENSNVIG00000023847) #26	YTHDF2 (ENSNVIG00000023849)	OPRD1 (ENSNVIG00000023851)	EPB41 (ENSNVIG00000023862)	TMEM200B (ENSNVIG00000024049)	SRSF4 (ENSNVIG00000024050)	MECR (ENSNVIG00000024055)	PTPRU (ENSNVIG00000024060)	ENSNVIG00000024069	MATN1 (ENSNVIG00000024071)	LAPM5 (ENSNVIG00000024073)	SDC3 (ENSNVIG00000024078)
Ursidae	ANCESTRAL SPECIES		ENSGT00940000163178	ENSGT00940000160073	ENSGT01000000214440.A.a.b.a #7	ENSGT00940000156115 #8	ENSGT00530000063770.c.a #9	ENSGT00390000010045 #10	ENSGT00950000183182.a.a #11	ENSGT01090000260093.b #12	ENSGT00950000182978.B #13	ENSGT01060000248589.D	ENSGT00390000012569.a #16	ENSGT00390000006264 #17	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #23	ENSGT00940000162094 #24	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761	ENSGT00940000157669	ENSGT00940000157833	ENSGT00530000063698.b	ENSGT00390000000885.b	ENSGT00940000156213	ENSGT00940000156592	ENSGT00960000190201	ENSGT00940000157151	ENSGT00940000159638	ENSGT00940000153446.a.b
Ursus	ANCESTRAL SPECIES		ENSGT00940000163178	ENSGT00940000160073	ENSGT01000000214440.A.a.b.a #7	ENSGT00940000156115 #8	ENSGT00530000063770.c.a #9	ENSGT00390000010045 #10	ENSGT00950000183182.a.a #11	ENSGT01090000260093.b #12	ENSGT00950000182978.B #13	ENSGT01060000248589.D	ENSGT00390000012569.a #16	ENSGT00390000006264 #17	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #23	ENSGT00940000162094 #24	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761	ENSGT00940000157833	ENSGT00530000063698.b	ENSGT00390000000885.b	ENSGT00940000156213	ENSGT00940000156592	ENSGT00960000190201	ENSGT00940000157151	ENSGT00940000159638	ENSGT00940000153446.a.b	ENSGT00940000160209
Polar bear	MODERN SPECIES	189	FAM76A (ENSUMAG00000011259)	STX12 (ENSUMAG00000011252) #7	PPP1R8 (ENSUMAG00000011243) #8	ENSUMAG00000011237 #9	THEMIS2 (ENSUMAG00000011236) #9	RPA2 (ENSUMAG00000011210) #10	SMPDL3B (ENSUMAG00000011203) #11	ENSUMAG00000011201 #12	EYA3 (ENSUMAG00000011197) #13	PTAFR (ENSUMAG00000011170)	DNAJC8 (ENSUMAG00000011154) #16	ATP5IF1 (ENSUMAG00000011151) #17	SESN2 (ENSUMAG00000011123) #18	MED18 (ENSUMAG00000011115) #19	PHACTR4 (ENSUMAG00000011103) #21	RCC1 (ENSUMAG00000011078) #22	TRNAU1AP (ENSUMAG00000011068) #23	RAB42 (ENSUMAG00000011052) #24	TAF12 (ENSUMAG00000011046) #25	GMEB1 (ENSUMAG00000011042) #26	YTHDF2 (ENSUMAG00000011040)	EPB41 (ENSUMAG00000010982)	ENSUMAG00000010964	ENSUMAG00000010957	MECR (ENSUMAG00000010949)	PTPRU (ENSUMAG00000009390)	MATN1 (ENSUMAG00000009240)	LAPTM5 (ENSUMAG00000009235)	PUM1 (ENSUMAG00000009211)	NKAIN1 (ENSUMAG00000009198)	SNRNP40 (ENSUMAG00000009191)
American black bear	MODERN SPECIES	1747															PHACTR4 (ENSUAMG00000008795) #21	RCC1 (ENSUAMG00000008791) #22	TRNAU1AP (ENSUAMG00000008789) #23	RAB42 (ENSUAMG00000008781) #24	TAF12 (ENSUAMG00000008778) #25	GMEB1 (ENSUAMG00000008775) #26	YTHDF2 (ENSUAMG00000008774)
Giant Panda	MODERN SPECIES	11	FGR (ENSAMEG00000010994)	ENSAMEG00000011039	FAM76A (ENSAMEG00000011050)	STX12 (ENSAMEG00000011073) #7	PPP1R8 (ENSAMEG00000029383) #8	THEMIS2 (ENSAMEG00000011126) #9	RPA2 (ENSAMEG00000011132) #10	SMPDL3B (ENSAMEG00000011140) #11	EYA3 (ENSAMEG00000011164) #13	ENSAMEG00000020209	DNAJC8 (ENSAMEG00000011231) #16	ATP5IF1 (ENSAMEG00000025701) #17	SESN2 (ENSAMEG00000011266) #18	MED18 (ENSAMEG00000011315) #19	PHACTR4 (ENSAMEG00000011317) #21	RCC1 (ENSAMEG00000011337) #22	TRNAU1AP (ENSAMEG00000011367) #23	RAB42 (ENSAMEG00000011382) #24	TAF12 (ENSAMEG00000011386) #25	GMEB1 (ENSAMEG00000011405) #26	YTHDF2 (ENSAMEG00000011429)	OPRD1 (ENSAMEG00000011437)	EPB41 (ENSAMEG00000011446)	TMEM200B (ENSAMEG00000030570)	ENSAMEG00000020210	SRSF4 (ENSAMEG00000025913)	MECR (ENSAMEG00000000564)	PTPRU (ENSAMEG00000000455)	LAPTM5 (ENSAMEG00000017647)	SDC3 (ENSAMEG00000024696)	PUM1 (ENSAMEG00000017656)
Canidae	ANCESTRAL SPECIES	14	ENSGT01000000214440.A.a.b.a #7	ENSGT00940000156115 #8	ENSGT00530000063770.c.a #9	ENSGT00390000010045 #10	ENSGT00950000183182.a.a #11	ENSGT01090000260093.b #12	ENSGT00950000182978.B #13	ENSGT01060000248589.D	ENSGT00390000012569.a.b #16	ENSGT00390000006264.f #17	ENSGT00390000012569.a.a #16	ENSGT00390000006264.e #17	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #23	ENSGT00940000162094 #24	ENSGT00390000002144.c #25	ENSGT00410000025596.a.b #26	ENSGT01100000263839	ENSGT00940000156761	ENSGT00940000157669	ENSGT00940000157833	ENSGT00530000063698.b	ENSGT00940000156213	ENSGT00950000185227	ENSGT00940000156592	ENSGT00940000157151	ENSGT00390000013067.a.a	ENSGT00940000159638
Canis_lupus	ANCESTRAL SPECIES	6	ENSGT01000000214440.A.a.b.a #7	ENSGT00940000156115 #8	ENSGT00530000063770.c.a #9	ENSGT00390000010045 #10	ENSGT00950000183182.a.a #11	ENSGT01090000260093.b #12	ENSGT00950000182978.B #13	ENSGT01060000248589.D	ENSGT00390000012569.a.b #16	ENSGT00390000006264.f #17	ENSGT00390000012569.a.a #16	ENSGT00390000006264.e #17	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #23	ENSGT00940000162094 #24	ENSGT00390000002144.c #25	ENSGT00410000025596.a.b #26	ENSGT01100000263839	ENSGT00940000156761	ENSGT00940000157669	ENSGT00940000157833	ENSGT00530000063698.b	ENSGT00940000156213	ENSGT00950000185227	ENSGT00940000156592	ENSGT00940000157151	ENSGT00390000013067.a.a	ENSGT00940000159638
Dingo	MODERN SPECIES	41	FAM76A (ENSCAFG00020023311)	STX12 (ENSCAFG00020023387) #7	PPP1R8 (ENSCAFG00020023390) #8	THEMIS2 (ENSCAFG00020023394) #9	RPA2 (ENSCAFG00020023397) #10	ENSCAFG00020023408 #11	XKR8 (ENSCAFG00020023415) #12	EYA3 (ENSCAFG00020023433) #13	PTAFR (ENSCAFG00020023486)	DNAJC8 (ENSCAFG00020023488) #16	ENSCAFG00020023497 #17	SESN2 (ENSCAFG00020023502) #18	MED18 (ENSCAFG00020023510) #19	ENSCAFG00020023515	PHACTR4 (ENSCAFG00020023520) #21	RCC1 (ENSCAFG00020023550) #22	TRNAU1AP (ENSCAFG00020023584) #23	RAB42 (ENSCAFG00020023600) #24	ENSCAFG00020023602 #25	GMEB1 (ENSCAFG00020023614) #26	ENSCAFG00020023622	YTHDF2 (ENSCAFG00020023623)	OPRD1 (ENSCAFG00020023627)	EPB41 (ENSCAFG00020023692)	TMEM200B (ENSCAFG00020023960)	SRSF4 (ENSCAFG00020023963)	ENSCAFG00020023966	MECR (ENSCAFG00020023972)	PTPRU (ENSCAFG00020024014)	ENSCAFG00020024568	MATN1 (ENSCAFG00020024574)
Dog	MODERN SPECIES	11	ENSCAFG00845010242	FAM76A (ENSCAFG00845011543)	STX12 (ENSCAFG00845011509) #7	PPP1R8 (ENSCAFG00845011474) #8	RPA2 (ENSCAFG00845011391) #10	THEMIS2 (ENSCAFG00845011158) #9	SMPDL3B (ENSCAFG00845011070) #11	XKR8 (ENSCAFG00845011047) #12	EYA3 (ENSCAFG00845010903) #13	PTAFR (ENSCAFG00845010815)	DNAJC8 (ENSCAFG00845010729) #16	ATP5IF1 (ENSCAFG00845010681) #17	SESN2 (ENSCAFG00845010570) #18	MED18 (ENSCAFG00845010525) #19	PHACTR4 (ENSCAFG00845010267) #21	RCC1 (ENSCAFG00845010088) #22	TRNAU1AP (ENSCAFG00845009934) #23	RAB42 (ENSCAFG00845009808) #24	TAF12 (ENSCAFG00845009757) #25	GMEB1 (ENSCAFG00845009630) #26	YTHDF2 (ENSCAFG00845009574)	OPRD1 (ENSCAFG00845009543)	EPB41 (ENSCAFG00845008658)	TMEM200B (ENSCAFG00845008383)	SRSF4 (ENSCAFG00845008307)	ENSCAFG00845008272	MECR (ENSCAFG00845008187)	PTPRU (ENSCAFG00845007699)	MATN1 (ENSCAFG00845007456)	LAPTM5 (ENSCAFG00845007384)	SDC3 (ENSCAFG00845007282)
Red fox	MODERN SPECIES	103	IFI6 (ENSVVUG00000012198)	FAM76A (ENSVVUG00000012204)	STX12 (ENSVVUG00000012213) #7	PPP1R8 (ENSVVUG00000012220) #8	THEMIS2 (ENSVVUG00000012229) #9	RPA2 (ENSVVUG00000012237) #10	SMPDL3B (ENSVVUG00000012240) #11	XKR8 (ENSVVUG00000012245) #12	EYA3 (ENSVVUG00000012251) #13	PTAFR (ENSVVUG00000012345)	ENSVVUG00000012347 #16	ATP5IF1 (ENSVVUG00000012384) #17	SESN2 (ENSVVUG00000012387) #18	MED18 (ENSVVUG00000012393) #19	PHACTR4 (ENSVVUG00000012412) #21	RCC1 (ENSVVUG00000012483) #22	TRNAU1AP (ENSVVUG00000012518) #23	RAB42 (ENSVVUG00000012572) #24	TAF12 (ENSVVUG00000012580) #25	GMEB1 (ENSVVUG00000012632) #26	YTHDF2 (ENSVVUG00000012648)	OPRD1 (ENSVVUG00000012659)	EPB41 (ENSVVUG00000012664)	TMEM200B (ENSVVUG00000012687)	SRSF4 (ENSVVUG00000012690)	ENSVVUG00000012696	MECR (ENSVVUG00000012707)	PTPRU (ENSVVUG00000012797)	ENSVVUG00000014580	MATN1 (ENSVVUG00000014610)	LAPTM5 (ENSVVUG00000014616)
Felidae	ANCESTRAL SPECIES	18	ENSGT00390000005534.b.b.c.a	ENSGT00940000160073	ENSGT01000000214440.A.a.b.a #7	ENSGT00940000156115 #8	ENSGT00530000063770.c.a #9	ENSGT00390000010045 #10	ENSGT00950000183182.a.a #11	ENSGT01090000260093.b #12	ENSGT00950000182978.B #13	ENSGT01060000248589.D	ENSGT00390000012569.a #16	ENSGT00390000006264 #17	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #23	ENSGT00940000162094 #24	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761	ENSGT00940000157669	ENSGT00940000157833	ENSGT00530000063698.b	ENSGT00940000156213	ENSGT00940000156592	ENSGT00940000157151	ENSGT00940000159638	ENSGT00940000153446.a.b	ENSGT00940000160209	ENSGT00940000158079
Panthera	ANCESTRAL SPECIES	4	ENSGT00390000005534.b.b.c.a	ENSGT00940000160073	ENSGT01000000214440.A.a.b.a #7	ENSGT00940000156115 #8	ENSGT00530000063770.c.a #9	ENSGT00390000010045 #10	ENSGT00950000183182.a.a #11	ENSGT01090000260093.b #12	ENSGT00950000182978.B #13	ENSGT01060000248589.D	ENSGT00390000012569.a #16	ENSGT00390000006264 #17	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #23	ENSGT00940000162094 #24	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT01030000238400	ENSGT00940000156761	ENSGT00940000157669	ENSGT00940000157833	ENSGT00530000063698.b	ENSGT00940000156213	ENSGT00940000156592	ENSGT00940000157151	ENSGT00940000159638	ENSGT00940000153446.a.b	ENSGT00940000160209
Tiger	MODERN SPECIES	577	ENSPTIG00000010596	FAM76A (ENSPTIG00000005861)	STX12 (ENSPTIG00000020624) #7	PPP1R8 (ENSPTIG00000019622) #8	THEMIS2 (ENSPTIG00000018247) #9	RPA2 (ENSPTIG00000016481) #10	SMPDL3B (ENSPTIG00000015373) #11	XKR8 (ENSPTIG00000015148) #12	EYA3 (ENSPTIG00000010453) #13	PTAFR (ENSPTIG00000006174)	DNAJC8 (ENSPTIG00000006734) #16	ATP5IF1 (ENSPTIG00000005932) #17	SESN2 (ENSPTIG00000004487) #18	MED18 (ENSPTIG00000001854) #19	PHACTR4 (ENSPTIG00000018753) #21	RCC1 (ENSPTIG00000017477) #22	TRNAU1AP (ENSPTIG00000016677) #23	ENSPTIG00000006048 #24	TAF12 (ENSPTIG00000015722) #25	GMEB1 (ENSPTIG00000014944) #26	ENSPTIG00000014736	YTHDF2 (ENSPTIG00000013201)	OPRD1 (ENSPTIG00000012209)	EPB41 (ENSPTIG00000021700)	ENSPTIG00000021305	MECR (ENSPTIG00000021100)	PTPRU (ENSPTIG00000012137)
Panthera_a	ANCESTRAL SPECIES	14	ENSGT00390000005534.b.b.c.a	ENSGT00940000160073	ENSGT01000000214440.A.a.b.a #7	ENSGT00940000156115 #8	ENSGT00530000063770.c.a #9	ENSGT00390000010045 #10	ENSGT00950000183182.a.a #11	ENSGT01090000260093.b #12	ENSGT00950000182978.B #13	ENSGT01060000248589.D	ENSGT00390000012569.a #16	ENSGT00390000006264 #17	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #23	ENSGT00940000162094 #24	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT01030000238400	ENSGT00940000156761	ENSGT00940000157669	ENSGT00940000157833	ENSGT00530000063698.b	ENSGT00940000156213	ENSGT00940000156592	ENSGT00940000157151	ENSGT00940000159638	ENSGT00940000153446.a.b	ENSGT00940000160209
leopard	MODERN SPECIES	145	FAM76A (ENSPPRG00000008178)	STX12 (ENSPPRG00000009522) #7	PPP1R8 (ENSPPRG00000010064) #8	THEMIS2 (ENSPPRG00000010577) #9	RPA2 (ENSPPRG00000011127) #10	SMPDL3B (ENSPPRG00000012800) #11	XKR8 (ENSPPRG00000012969) #12	EYA3 (ENSPPRG00000023907) #13	PTAFR (ENSPPRG00000022317)	DNAJC8 (ENSPPRG00000023348) #16	ATP5IF1 (ENSPPRG00000023262) #17	ENSPPRG00000023026	SESN2 (ENSPPRG00000000089) #18	MED18 (ENSPPRG00000000452) #19	PHACTR4 (ENSPPRG00000001381) #21	RCC1 (ENSPPRG00000004306) #22	TRNAU1AP (ENSPPRG00000004416) #23	RAB42 (ENSPPRG00000004516) #24	TAF12 (ENSPPRG00000004656) #25	GMEB1 (ENSPPRG00000004727) #26	ENSPPRG00000005046	YTHDF2 (ENSPPRG00000005205)	OPRD1 (ENSPPRG00000005386)	EPB41 (ENSPPRG00000014207)	TMEM200B (ENSPPRG00000014423)	SRSF4 (ENSPPRG00000016248)	MECR (ENSPPRG00000019583)	PTPRU (ENSPPRG00000022865)
lion	MODERN SPECIES	8	ENSPLOG00000008704	FAM76A (ENSPLOG00000008609)	STX12 (ENSPLOG00000008547) #7	PPP1R8 (ENSPLOG00000008473) #8	THEMIS2 (ENSPLOG00000008402) #9	RPA2 (ENSPLOG00000008334) #10	SMPDL3B (ENSPLOG00000008186) #11	XKR8 (ENSPLOG00000008129) #12	EYA3 (ENSPLOG00000008003) #13	PTAFR (ENSPLOG00000007953)	DNAJC8 (ENSPLOG00000007924) #16	ATP5IF1 (ENSPLOG00000007893) #17	SESN2 (ENSPLOG00000007834) #18	MED18 (ENSPLOG00000007806) #19	PHACTR4 (ENSPLOG00000007695) #21	RCC1 (ENSPLOG00000013070) #22	TRNAU1AP (ENSPLOG00000012936) #23	RAB42 (ENSPLOG00000012882) #24	TAF12 (ENSPLOG00000012834) #25	GMEB1 (ENSPLOG00000012687) #26	YTHDF2 (ENSPLOG00000012653)	OPRD1 (ENSPLOG00000012612)	EPB41 (ENSPLOG00000010573)	TMEM200B (ENSPLOG00000010145)	SRSF4 (ENSPLOG00000010130)	MECR (ENSPLOG00000010095)	PTPRU (ENSPLOG00000009674)	MATN1 (ENSPLOG00000009594)	LAPTM5 (ENSPLOG00000009567)	SDC3 (ENSPLOG00000009532)	PUM1 (ENSPLOG00000009086)
Cat	MODERN SPECIES	239	IFI6 (ENSFCAG00000033862)	ENSFCAG00000021929	FAM76A (ENSFCAG00000035488)	PPP1R8 (ENSFCAG00000027954) #8	THEMIS2 (ENSFCAG00000003404) #9	RPA2 (ENSFCAG00000039600) #10	XKR8 (ENSFCAG00000034139) #12	EYA3 (ENSFCAG00000003408) #13	PTAFR (ENSFCAG00000012031)	DNAJC8 (ENSFCAG00000013393) #16	ATP5IF1 (ENSFCAG00000013395) #17	ENSFCAG00000047435	SESN2 (ENSFCAG00000013396) #18	PHACTR4 (ENSFCAG00000013359) #21	ENSFCAG00000044124	RCC1 (ENSFCAG00000013399) #22	TRNAU1AP (ENSFCAG00000013401) #23	RAB42 (ENSFCAG00000037124) #24	TAF12 (ENSFCAG00000029658) #25	GMEB1 (ENSFCAG00000018209) #26	YTHDF2 (ENSFCAG00000012446)	EPB41 (ENSFCAG00000007752)	TMEM200B (ENSFCAG00000026969)	SRSF4 (ENSFCAG00000027821)	MECR (ENSFCAG00000002202)	PTPRU (ENSFCAG00000002203)	MATN1 (ENSFCAG00000028893)	LAPTM5 (ENSFCAG00000022721)	SDC3 (ENSFCAG00000010378)	PUM1 (ENSFCAG00000010374)	NKAIN1 (ENSFCAG00000045405)
Laurasiatheria_c	ANCESTRAL SPECIES		ENSGT00940000163178	ENSGT00940000160073	ENSGT01000000214440.A.a.b.a #7	ENSGT00940000156115 #8	ENSGT00530000063770.c.a #9	ENSGT00390000010045 #10	ENSGT00950000183182.a.a #11	ENSGT01090000260093.b #12	ENSGT00950000182978.B #13	ENSGT01060000248589.D	ENSGT00390000012569.a #16	ENSGT00390000006264 #17	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #23	ENSGT00940000162094 #24	ENSGT00940000164873	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761	ENSGT00940000157669	ENSGT00940000157833	ENSGT00530000063698.b	ENSGT00940000156213	ENSGT00950000185227	ENSGT00940000156592	ENSGT00940000157151	ENSGT00940000159638	ENSGT00940000153446.a.b
Equus	ANCESTRAL SPECIES	2	ENSGT00940000163178	ENSGT00940000160073	ENSGT01000000214440.A.a.b.a #7	ENSGT00940000156115 #8	ENSGT00530000063770.c.a #9	ENSGT00390000010045 #10	ENSGT00950000183182.a.a #11	ENSGT01090000260093.b #12	ENSGT00950000182978.B #13	ENSGT01060000248589.D	ENSGT00390000012569.a #16	ENSGT00390000006264 #17	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #23	ENSGT00940000162094 #24	ENSGT00940000164873	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761	ENSGT00940000157669	ENSGT00940000157833	ENSGT00530000063698.b	ENSGT00940000156213	ENSGT00950000185227	ENSGT00940000156592	ENSGT00940000157151	ENSGT00940000159638	ENSGT00940000153446.a.b
Horse	MODERN SPECIES	11	FGR (ENSECAG00000007837)	STX12 (ENSECAG00000012718) #7	PPP1R8 (ENSECAG00000009693) #8	RPA2 (ENSECAG00000005616) #10	FAM76A (ENSECAG00000019350)	THEMIS2 (ENSECAG00000008596) #9	SMPDL3B (ENSECAG00000000634) #11	XKR8 (ENSECAG00000043252) #12	EYA3 (ENSECAG00000017176) #13	PTAFR (ENSECAG00000049724)	ATP5IF1 (ENSECAG00000011826) #17	DNAJC8 (ENSECAG00000012708) #16	SESN2 (ENSECAG00000001989) #18	MED18 (ENSECAG00000057255) #19	PHACTR4 (ENSECAG00000022608) #21	RCC1 (ENSECAG00000017252) #22	TRNAU1AP (ENSECAG00000012980) #23	RAB42 (ENSECAG00000012716) #24	ENSECAG00000031513	TAF12 (ENSECAG00000012688) #25	GMEB1 (ENSECAG00000009764) #26	YTHDF2 (ENSECAG00000023108)	OPRD1 (ENSECAG00000022616)	TMEM200B (ENSECAG00000040505)	EPB41 (ENSECAG00000022255)	SRSF4 (ENSECAG00000021350)	ENSECAG00000045698	MECR (ENSECAG00000015370)	PTPRU (ENSECAG00000012344)	MATN1 (ENSECAG00000008747)	LAPTM5 (ENSECAG00000000686)
Donkey	MODERN SPECIES	25	FAM76A (ENSEASG00005009497)	IFI6 (ENSEASG00005025976)	STX12 (ENSEASG00005009498) #7	PPP1R8 (ENSEASG00005009499) #8	THEMIS2 (ENSEASG00005009503) #9	ENSEASG00005009504 #10	SMPDL3B (ENSEASG00005009506) #11	ENSEASG00005023883 #12	EYA3 (ENSEASG00005009517) #13	PTAFR (ENSEASG00005036385)	DNAJC8 (ENSEASG00005010027) #16	ATP5IF1 (ENSEASG00005034782) #17	SESN2 (ENSEASG00005010029) #18	MED18 (ENSEASG00005025944) #19	PHACTR4 (ENSEASG00005010036) #21	RCC1 (ENSEASG00005010059) #22	TRNAU1AP (ENSEASG00005010062) #23	RAB42 (ENSEASG00005030054) #24	ENSEASG00005034491	TAF12 (ENSEASG00005010142) #25	GMEB1 (ENSEASG00005010149) #26	YTHDF2 (ENSEASG00005010152)	OPRD1 (ENSEASG00005010156)	EPB41 (ENSEASG00005010160)	TMEM200B (ENSEASG00005030825)	SRSF4 (ENSEASG00005010168)	ENSEASG00005024193	MECR (ENSEASG00005010173)	PTPRU (ENSEASG00005010255)	MATN1 (ENSEASG00005010809)	LAPTM5 (ENSEASG00005010811)
Chiroptera	ANCESTRAL SPECIES		ENSGT00940000163178	ENSGT00940000160073	ENSGT01000000214440.A.a.b.a #7	ENSGT00940000156115 #8	ENSGT00530000063770.c.a #9	ENSGT00390000010045 #10	ENSGT00950000183182.a.a #11	ENSGT01090000260093.b #12	ENSGT00950000182978.B #13	ENSGT01060000248589.D	ENSGT00390000012569.a #16	ENSGT00390000006264 #17	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #23	ENSGT00940000162094 #24	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761	ENSGT00940000157669	ENSGT00940000157833	ENSGT00530000063698.b	ENSGT00940000156213	ENSGT00940000156592	ENSGT00940000157151	ENSGT00940000159638	ENSGT00940000153446.a.b	ENSGT00940000160209	ENSGT00940000158079
Microchiroptera	ANCESTRAL SPECIES	1	ENSGT00940000163178	ENSGT00940000160073	ENSGT01000000214440.A.a.b.a #7	ENSGT00940000156115 #8	ENSGT00530000063770.c.a #9	ENSGT00390000010045 #10	ENSGT00950000183182.a.a #11	ENSGT01090000260093.b #12	ENSGT00950000182978.B #13	ENSGT01060000248589.D	ENSGT00390000012569.a #16	ENSGT00390000006264 #17	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #23	ENSGT00940000162094 #24	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761	ENSGT00940000157669	ENSGT00940000157833	ENSGT00530000063698.b	ENSGT00940000156213	ENSGT00940000156592	ENSGT00940000157151	ENSGT00940000159638	ENSGT00940000153446.a.b	ENSGT00940000160209	ENSGT00940000158079
Greater horseshoe bat	MODERN SPECIES	27	STX12 (ENSRFEG00010006392) #7	PPP1R8 (ENSRFEG00010006439) #8	THEMIS2 (ENSRFEG00010006552) #9	RPA2 (ENSRFEG00010006599) #10	SMPDL3B (ENSRFEG00010006653) #11	XKR8 (ENSRFEG00010006721) #12	EYA3 (ENSRFEG00010006785) #13	ENSRFEG00010006954	ENSRFEG00010006978	PTAFR (ENSRFEG00010007010)	DNAJC8 (ENSRFEG00010007033) #16	ATP5IF1 (ENSRFEG00010007102) #17	SESN2 (ENSRFEG00010007186) #18	MED18 (ENSRFEG00010007232) #19	PHACTR4 (ENSRFEG00010007281) #21	RCC1 (ENSRFEG00010007341) #22	TRNAU1AP (ENSRFEG00010007390) #23	RAB42 (ENSRFEG00010007467) #24	TAF12 (ENSRFEG00010007502) #25	GMEB1 (ENSRFEG00010007547) #26	YTHDF2 (ENSRFEG00010007674)	ENSRFEG00010007704	OPRD1 (ENSRFEG00010007729)	EPB41 (ENSRFEG00010007813)	ENSRFEG00010008226	TMEM200B (ENSRFEG00010008234)	SRSF4 (ENSRFEG00010008251)	MECR (ENSRFEG00010008283)	PTPRU (ENSRFEG00010008351)	MATN1 (ENSRFEG00010008435)	LAPTM5 (ENSRFEG00010008534)
Microbat	MODERN SPECIES	1134	IFI6 (ENSMLUG00000014587)	FAM76A (ENSMLUG00000000136)	STX12 (ENSMLUG00000000141) #7	PPP1R8 (ENSMLUG00000000144) #8	THEMIS2 (ENSMLUG00000000147) #9	RPA2 (ENSMLUG00000000151) #10	SMPDL3B (ENSMLUG00000026678) #11	XKR8 (ENSMLUG00000000154) #12	AHDC1 (ENSMLUG00000014574)	EYA3 (ENSMLUG00000000155) #13	PTAFR (ENSMLUG00000000164)	DNAJC8 (ENSMLUG00000000165) #16	ENSMLUG00000000170 #17	SESN2 (ENSMLUG00000000171) #18	PHACTR4 (ENSMLUG00000017066) #21	RCC1 (ENSMLUG00000017075) #22	TRNAU1AP (ENSMLUG00000012586) #23	RAB42 (ENSMLUG00000012593) #24	TAF12 (ENSMLUG00000012595) #25	GMEB1 (ENSMLUG00000012602) #26	YTHDF2 (ENSMLUG00000012606)	OPRD1 (ENSMLUG00000012582)	EPB41 (ENSMLUG00000014752)	SRSF4 (ENSMLUG00000014770)	MECR (ENSMLUG00000014778)	PTPRU (ENSMLUG00000014784)
Megabat	MODERN SPECIES	3218															PHACTR4 (ENSPVAG00000017207) #21	RCC1 (ENSPVAG00000017211) #22	TRNAU1AP (ENSPVAG00000017214) #23	RAB42 (ENSPVAG00000017218) #24	TAF12 (ENSPVAG00000017220) #25	GMEB1 (ENSPVAG00000017223) #26	YTHDF2 (ENSPVAG00000017224)	OPRD1 (ENSPVAG00000017226)
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00940000155543 #22
Common shrew	MODERN SPECIES	5734																RCC1 (ENSSARG00000010409) #22
Hedgehog	MODERN SPECIES	7307																RCC1 (ENSEEUG00000004565) #22
Atlantogenata	ANCESTRAL SPECIES	4	ENSGT00940000163178	ENSGT00940000160073	ENSGT01000000214440.A.a.b.a #7	ENSGT00940000156115 #8	ENSGT00530000063770.c.a #9	ENSGT00390000010045 #10	ENSGT00950000183182.a.a #11	ENSGT01090000260093.b #12	ENSGT00950000182978.B #13	ENSGT01060000248589.D	ENSGT00390000012569.a #16	ENSGT00390000006264 #17	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #23	ENSGT00940000162094 #24	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761	ENSGT00940000157669	ENSGT00940000157833	ENSGT00530000063698.b	ENSGT00940000156213	ENSGT00940000156592	ENSGT00940000157151	ENSGT00940000159638	ENSGT00940000153446.a.b	ENSGT00940000160209	ENSGT00940000158079
Afrotheria	ANCESTRAL SPECIES	15	ENSGT00940000163178	ENSGT00940000160073	ENSGT01000000214440.A.a.b.a #7	ENSGT00940000156115 #8	ENSGT00530000063770.c.a #9	ENSGT00390000010045 #10	ENSGT00950000183182.a.a #11	ENSGT01090000260093.b #12	ENSGT00950000182978.B #13	ENSGT01060000248589.D	ENSGT00390000012569.a #16	ENSGT00390000006264 #17	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #23	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761	ENSGT00940000157669	ENSGT00940000157833	ENSGT00530000063698.b	ENSGT00940000156213	ENSGT00940000156592	ENSGT00940000157151	ENSGT00940000159638	ENSGT00940000153446.a.b	ENSGT00940000160209	ENSGT00940000158079	ENSGT00940000159949
Afrotheria_a	ANCESTRAL SPECIES	15	ENSGT00940000163178	ENSGT00940000160073	ENSGT01000000214440.A.a.b.a #7	ENSGT00940000156115 #8	ENSGT00530000063770.c.a #9	ENSGT00390000010045 #10	ENSGT00950000183182.a.a #11	ENSGT01090000260093.b #12	ENSGT00950000182978.B #13	ENSGT01060000248589.D	ENSGT00390000012569.a #16	ENSGT00390000006264 #17	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #23	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761	ENSGT00940000157669	ENSGT00940000157833	ENSGT00530000063698.b	ENSGT00940000156213	ENSGT00940000156592	ENSGT00940000157151	ENSGT00940000159638	ENSGT00940000153446.a.b	ENSGT00940000160209	ENSGT00940000158079	ENSGT00940000159949
Elephant	MODERN SPECIES	332	ENSLAFG00000023210	FAM76A (ENSLAFG00000017824)	STX12 (ENSLAFG00000017828) #7	PPP1R8 (ENSLAFG00000017834) #8	THEMIS2 (ENSLAFG00000009492) #9	RPA2 (ENSLAFG00000014387) #10	SMPDL3B (ENSLAFG00000008605) #11	XKR8 (ENSLAFG00000008610) #12	EYA3 (ENSLAFG00000008613) #13	PTAFR (ENSLAFG00000007791)	DNAJC8 (ENSLAFG00000005695) #16	ATP5IF1 (ENSLAFG00000005700) #17	SESN2 (ENSLAFG00000013698) #18	MED18 (ENSLAFG00000012511) #19	PHACTR4 (ENSLAFG00000007617) #21	RCC1 (ENSLAFG00000007626) #22	TRNAU1AP (ENSLAFG00000007628) #23	TAF12 (ENSLAFG00000014103) #25	GMEB1 (ENSLAFG00000011849) #26	YTHDF2 (ENSLAFG00000030451)	OPRD1 (ENSLAFG00000017219)	EPB41 (ENSLAFG00000002571)	TMEM200B (ENSLAFG00000031258)	SRSF4 (ENSLAFG00000002575)	MECR (ENSLAFG00000002576)	PTPRU (ENSLAFG00000010090)	ENSLAFG00000032386	MATN1 (ENSLAFG00000012878)	LAPTM5 (ENSLAFG00000029640)	SDC3 (ENSLAFG00000013200)	PUM1 (ENSLAFG00000003178)
Hyrax	MODERN SPECIES	7096															ENSPCAG00000014383 #21	RCC1 (ENSPCAG00000014443) #22
Tenrec	MODERN SPECIES	7164																RCC1 (ENSETEG00000011999) #22
Xenarthra	ANCESTRAL SPECIES	38	ENSGT00940000157554	ENSGT00940000160073	ENSGT01000000214440.A.a.b.a #7	ENSGT00940000156115 #8	ENSGT00530000063770.c.a #9	ENSGT00390000010045 #10	ENSGT00950000183182.a.a #11	ENSGT01090000260093.b #12	ENSGT00950000182978.B #13	ENSGT01060000248589.D	ENSGT00390000012569.a #16	ENSGT00390000006264 #17	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #23	ENSGT00940000162094 #24	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761	ENSGT00940000157669	ENSGT00940000157833	ENSGT00530000063698.b	ENSGT00940000156213	ENSGT00940000156592
Sloth	MODERN SPECIES	6469																RCC1 (ENSCHOG00000004654) #22
Armadillo	MODERN SPECIES	1291	STX12 (ENSDNOG00000049359) #7	PPP1R8 (ENSDNOG00000033057) #8	THEMIS2 (ENSDNOG00000013968) #9	RPA2 (ENSDNOG00000023660) #10	SMPDL3B (ENSDNOG00000032579) #11	XKR8 (ENSDNOG00000032960) #12	EYA3 (ENSDNOG00000044648) #13	PTAFR (ENSDNOG00000044017)	ENSDNOG00000042785 #16	ENSDNOG00000045464 #17	ENSDNOG00000038753	SESN2 (ENSDNOG00000017933) #18	MED18 (ENSDNOG00000012531) #19	ENSDNOG00000035347	PHACTR4 (ENSDNOG00000003784) #21	RCC1 (ENSDNOG00000042718) #22	ENSDNOG00000033009 #23	RAB42 (ENSDNOG00000010079) #24	TAF12 (ENSDNOG00000045864) #25	GMEB1 (ENSDNOG00000025258) #26	YTHDF2 (ENSDNOG00000033903)	OPRD1 (ENSDNOG00000046525)	EPB41 (ENSDNOG00000019472)	TMEM200B (ENSDNOG00000035804)	SRSF4 (ENSDNOG00000047961)	MECR (ENSDNOG00000048252)
Marsupialia	ANCESTRAL SPECIES	10	ENSGT00940000157554	ENSGT00940000160073	ENSGT01000000214440.A.a.b.a #7	ENSGT00940000156115 #8	ENSGT00530000063770.c.a #9	ENSGT00390000010045 #10	ENSGT00950000183182.a.a #11	ENSGT01090000260093.b #12	ENSGT00950000182978.B #13	ENSGT01060000248589.D	ENSGT00390000012569.a #16	ENSGT00390000006264 #17	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #23	ENSGT00940000162094 #24	ENSGT00940000164873	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761	ENSGT00940000157669	ENSGT00940000157833	ENSGT00530000063698.b	ENSGT00940000156213	ENSGT00940000156592	ENSGT00940000157151	ENSGT00940000159638	ENSGT00940000153446.a.b	ENSGT00940000160209
Opossum	MODERN SPECIES	3	FAM76A (ENSMODG00000010679)	PPP1R8 (ENSMODG00000010718) #8	ENSMODG00000046728 #9	RPA2 (ENSMODG00000010736) #10	ENSMODG00000010740 #11	ENSMODG00000049155 #11	ENSMODG00000042812 #11	XKR8 (ENSMODG00000010757) #12	EYA3 (ENSMODG00000010782) #13	PTAFR (ENSMODG00000023875)	DNAJC8 (ENSMODG00000050324) #16	ENSMODG00000010826 #17	SESN2 (ENSMODG00000010846) #18	MED18 (ENSMODG00000037195) #19	PHACTR4 (ENSMODG00000010884) #21	RCC1 (ENSMODG00000010901) #22	TRNAU1AP (ENSMODG00000010927) #23	RAB42 (ENSMODG00000023873) #24	ENSMODG00000010938	TAF12 (ENSMODG00000040227) #25	GMEB1 (ENSMODG00000010947) #26	YTHDF2 (ENSMODG00000023872)	OPRD1 (ENSMODG00000011019)	EPB41 (ENSMODG00000011038)	ENSMODG00000028993	TMEM200B (ENSMODG00000011044)	SRSF4 (ENSMODG00000011052)	MECR (ENSMODG00000011066)	ENSMODG00000011076	ENSMODG00000023869	ENSMODG00000049794
Marsupialia_b	ANCESTRAL SPECIES	4	ENSGT00940000157554	ENSGT00940000160073	ENSGT01000000214440.A.a.b.a #7	ENSGT00940000156115 #8	ENSGT00530000063770.c.a #9	ENSGT00390000010045 #10	ENSGT00950000183182.a.a #11	ENSGT01090000260093.b #12	ENSGT00950000182978.B #13	ENSGT01060000248589.D	ENSGT00390000012569.a #16	ENSGT00390000006264 #17	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #23	ENSGT00940000162094 #24	ENSGT00940000164873	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761	ENSGT00940000157669	ENSGT00940000157833	ENSGT00530000063698.b	ENSGT00940000156213	ENSGT00940000156592	ENSGT00940000157151	ENSGT00940000159638	ENSGT00940000153446.a.b	ENSGT00940000160209
Diprotodontia	ANCESTRAL SPECIES	3	ENSGT00940000157554	ENSGT00940000160073	ENSGT01000000214440.A.a.b.a #7	ENSGT00940000156115 #8	ENSGT00530000063770.c.a #9	ENSGT00390000010045 #10	ENSGT00950000183182.a.a #11	ENSGT01090000260093.b #12	ENSGT00950000182978.B #13	ENSGT01060000248589.D	ENSGT00390000012569.a #16	ENSGT00390000006264 #17	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #23	ENSGT00940000162094 #24	ENSGT00940000164873	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761	ENSGT00940000157669	ENSGT00940000157833	ENSGT00530000063698.b	ENSGT00940000156213	ENSGT00940000156592	ENSGT00940000157151	ENSGT00940000159638	ENSGT00940000153446.a.b	ENSGT00940000160209
Diprotodontia_a	ANCESTRAL SPECIES	4	ENSGT00940000160073	ENSGT01000000214440.A.a.b.a #7	ENSGT00940000156115 #8	ENSGT00530000063770.c.a #9	ENSGT00390000010045 #10	ENSGT00950000183182.a.a #11	ENSGT01090000260093.b #12	ENSGT00950000182978.B #13	ENSGT01060000248589.D	ENSGT00390000012569.a #16	ENSGT00390000006264 #17	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00940000158516.d	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #23	ENSGT00940000162094 #24	ENSGT00940000164873	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761	ENSGT00940000157669	ENSGT00940000157833	ENSGT00530000063698.b	ENSGT00940000156213	ENSGT00940000156592	ENSGT00940000157151	ENSGT00940000159638	ENSGT00940000153446.a.b	ENSGT00940000160209
Common wonbat	MODERN SPECIES	1014	ENSVURG00010018943	ENSVURG00010018952	ENSVURG00010018959 #7	ENSVURG00010018962 #8	ENSVURG00010018967 #9	ENSVURG00010018972 #10	ENSVURG00010018977 #11	ENSVURG00010018981 #12	ENSVURG00010018986 #13	DNAJC8 (ENSVURG00010018998) #16	ATP5IF1 (ENSVURG00010019004) #17	SESN2 (ENSVURG00010019007) #18	MED18 (ENSVURG00010019012) #19	ENSVURG00010019014	PHACTR4 (ENSVURG00010019021) #21	RCC1 (ENSVURG00010019034) #22	TRNAU1AP (ENSVURG00010019042) #23	RAB42 (ENSVURG00010019057) #24	ENSVURG00010019060	TAF12 (ENSVURG00010019065) #25	GMEB1 (ENSVURG00010019073) #26	YTHDF2 (ENSVURG00010019090)	OPRD1 (ENSVURG00010019102)	EPB41 (ENSVURG00010019138)	TMEM200B (ENSVURG00010019172)	SRSF4 (ENSVURG00010019175)	MECR (ENSVURG00010019183)	PTPRU (ENSVURG00010019212)	ENSVURG00010019248	MATN1 (ENSVURG00010019256)	LAPTM5 (ENSVURG00010019267)
koala	MODERN SPECIES	14	FAM76A (ENSPCIG00000022294)	STX12 (ENSPCIG00000022297) #7	PPP1R8 (ENSPCIG00000036471) #8	THEMIS2 (ENSPCIG00000022310) #9	RPA2 (ENSPCIG00000022320) #10	SMPDL3B (ENSPCIG00000022329) #11	XKR8 (ENSPCIG00000022335) #12	EYA3 (ENSPCIG00000022339) #13	PTAFR (ENSPCIG00000022363)	DNAJC8 (ENSPCIG00000022366) #16	ATP5IF1 (ENSPCIG00000022375) #17	SESN2 (ENSPCIG00000022378) #18	MED18 (ENSPCIG00000022383) #19	ENSPCIG00000022385	PHACTR4 (ENSPCIG00000027472) #21	RCC1 (ENSPCIG00000010439) #22	TRNAU1AP (ENSPCIG00000022389) #23	ENSPCIG00000022398 #24	ENSPCIG00000022399	TAF12 (ENSPCIG00000022402) #25	GMEB1 (ENSPCIG00000022406) #26	YTHDF2 (ENSPCIG00000022413)	OPRD1 (ENSPCIG00000022418)	EPB41 (ENSPCIG00000022421)	TMEM200B (ENSPCIG00000022428)	ENSPCIG00000022430	MECR (ENSPCIG00000022434)	PTPRU (ENSPCIG00000022440)	ENSPCIG00000022449	MATN1 (ENSPCIG00000017737)	LAPTM5 (ENSPCIG00000014169)
Wallaby	MODERN SPECIES	8697																RCC1 (ENSMEUG00000008826) #22
Tasmanian devil	MODERN SPECIES	2	FGR (ENSSHAG00000001546)	FAM76A (ENSSHAG00000022341)	PPP1R8 (ENSSHAG00000024313) #8	THEMIS2 (ENSSHAG00000015133) #9	RPA2 (ENSSHAG00000015255) #10	SMPDL3B (ENSSHAG00000015331) #11	XKR8 (ENSSHAG00000026927) #12	EYA3 (ENSSHAG00000027000) #13	ENSSHAG00000029212	PTAFR (ENSSHAG00000026787)	DNAJC8 (ENSSHAG00000003717) #16	ENSSHAG00000022171 #17	SESN2 (ENSSHAG00000004785) #18	MED18 (ENSSHAG00000031976) #19	PHACTR4 (ENSSHAG00000006497) #21	RCC1 (ENSSHAG00000027903) #22	TRNAU1AP (ENSSHAG00000008108) #23	ENSSHAG00000008443 #24	ENSSHAG00000030345	TAF12 (ENSSHAG00000008563) #25	GMEB1 (ENSSHAG00000009099) #26	YTHDF2 (ENSSHAG00000009502)	OPRD1 (ENSSHAG00000024576)	EPB41 (ENSSHAG00000011604)	TMEM200B (ENSSHAG00000025196)	SRSF4 (ENSSHAG00000024879)	PTPRU (ENSSHAG00000017352)	ENSSHAG00000031333	LAPTM5 (ENSSHAG00000013255)	SDC3 (ENSSHAG00000028518)	PUM1 (ENSSHAG00000010918)
Platypus	MODERN SPECIES	7	FGR (ENSOANG00000010074)	ENSOANG00000040112	ENSOANG00000045139	FAM76A (ENSOANG00000039444)	STX12 (ENSOANG00000008316) #7	PPP1R8 (ENSOANG00000008315) #8	ENSOANG00000037115	ENSOANG00000000149	ENSOANG00000038747	ENSOANG00000000475	DNAJC8 (ENSOANG00000048514) #16	ENSOANG00000049622 #17	SESN2 (ENSOANG00000000634) #18	MED18 (ENSOANG00000036333) #19	PHACTR4 (ENSOANG00000001179) #21	RCC1 (ENSOANG00000001180) #22	TRNAU1AP (ENSOANG00000038042) #23	TAF12 (ENSOANG00000050475) #25	GMEB1 (ENSOANG00000006127) #26	YTHDF2 (ENSOANG00000006124)	ENSOANG00000037089	ENSOANG00000014967	ENSOANG00000039060	ENSOANG00000047775	ZNF436 (ENSOANG00000043950)	ENSOANG00000003962	HNRNPR (ENSOANG00000003961)	ENSOANG00000008954	LUZP1 (ENSOANG00000040319)	KDM1A (ENSOANG00000004000)	ENSOANG00000028498
Sauria	ANCESTRAL SPECIES	23	ENSGT00940000154868.a.b	ENSGT00940000160932	ENSGT00940000159398	ENSGT00940000157531	ENSGT00530000063929.a.b	ENSGT01060000248564.b.a.a.a	ENSGT00950000182962.b.a	ENSGT00390000018883	ENSGT00940000157554	ENSGT00940000163923.f	ENSGT00940000163923.e	ENSGT00940000160073	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000157669	ENSGT00940000157034	ENSGT00940000161085	ENSGT00940000160992	ENSGT00940000161879	ENSGT00940000160504	ENSGT00940000167209	ENSGT00940000156761	ENSGT01100000263839	ENSGT00410000025596.a.b #26	ENSGT00390000002144 #25	ENSGT00940000164873	ENSGT00940000162094 #24	ENSGT00940000156139.ab #23	ENSGT00940000155019.a.a
Archelosauria	ANCESTRAL SPECIES	25	ENSGT00940000160932	ENSGT00940000159398	ENSGT00940000157531	ENSGT00530000063929.a.b	ENSGT01060000248564.b.a.a.a	ENSGT00950000182962.b.a	ENSGT00390000018883	ENSGT00940000157554	ENSGT00940000163923.f	ENSGT00940000163923.e	ENSGT00940000163282.j	ENSGT00940000161215.hc.b	ENSGT00940000160073	ENSGT00950000183168.B.a #18	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000157669	ENSGT00940000157034	ENSGT00940000161085	ENSGT00940000160992	ENSGT00940000161879	ENSGT00940000160504	ENSGT00940000167209	ENSGT00940000156761	ENSGT01100000263839	ENSGT00410000025596.a.b #26	ENSGT00390000002144 #25	ENSGT00940000164873	ENSGT00940000162094 #24	ENSGT00940000156139.ab #23	ENSGT00940000155019.a.a
Archosauria	ANCESTRAL SPECIES	22	ENSGT00940000154868.a.b	ENSGT00940000160932	ENSGT00940000159398	ENSGT00530000063929.a.b	ENSGT01060000248564.b.a.a.a	ENSGT00950000182962.b.a	ENSGT00390000018883	ENSGT00940000157554	ENSGT00940000163923.f	ENSGT00940000163923.e	ENSGT00940000163282.j	ENSGT00940000161215.hc.b	ENSGT00940000160073	ENSGT00950000183168.B.a #18	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000157669	ENSGT00940000157034	ENSGT00940000161085	ENSGT00940000160992	ENSGT00940000160504	ENSGT00940000167209	ENSGT00940000156761	ENSGT01100000263839	ENSGT00410000025596.a.b #26	ENSGT00390000002144 #25	ENSGT00940000164873	ENSGT00940000162094 #24	ENSGT00940000156139.ab #23	ENSGT00940000155019.a.a	ENSGT00960000189438
Aves	ANCESTRAL SPECIES	28	ENSGT00940000156338	ENSGT00950000182900.B	ENSGT00390000007371	ENSGT00940000160932	ENSGT00940000159398	ENSGT00530000063929.a.b	ENSGT01060000248564.b.a.a.a	ENSGT00950000182962.b.a	ENSGT00390000018883	ENSGT00940000157554	ENSGT00940000163923.f	ENSGT00940000163923.e	ENSGT00940000160073	ENSGT00950000183168.B.a #18	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000157669	ENSGT00940000157034	ENSGT00940000161085	ENSGT00940000160992	ENSGT00940000160504	ENSGT00940000167209	ENSGT00940000156761	ENSGT01100000263839	ENSGT00410000025596.a.b #26	ENSGT00390000002144 #25	ENSGT00940000164873	ENSGT00940000162094 #24	ENSGT00940000156139.ab #23	ENSGT00940000155019.a.a	ENSGT00960000189438
Neognathae	ANCESTRAL SPECIES	26	ENSGT00940000156338	ENSGT00950000182900.B	ENSGT00390000007371	ENSGT00940000160932	ENSGT00940000159398	ENSGT00530000063929.a.b	ENSGT01060000248564.b.a.a.a	ENSGT00950000182962.b.a	ENSGT00390000018883	ENSGT00940000157554	ENSGT00940000163923.f	ENSGT00940000163923.e	ENSGT00940000160073	ENSGT00950000183168.B.a #18	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000157669	ENSGT00940000157034	ENSGT00940000161085	ENSGT00940000160992	ENSGT00940000160504	ENSGT00940000167209	ENSGT00940000156761	ENSGT01100000263839	ENSGT00410000025596.a.b #26	ENSGT00390000002144 #25	ENSGT00940000164873	ENSGT00940000162094 #24	ENSGT00940000156139.ab #23	ENSGT00940000155019.a.a	ENSGT00960000189438
Galloanserae	ANCESTRAL SPECIES	25	ENSGT00950000182900.B	ENSGT00390000007371	ENSGT00940000160932	ENSGT00960000191085	ENSGT00940000159398	ENSGT00530000063929.a.b	ENSGT01060000248564.b.a.a.a	ENSGT00950000182962.b.a	ENSGT00390000018883	ENSGT00940000157554	ENSGT00940000163923.f	ENSGT00940000163923.e	ENSGT00940000160073	ENSGT00950000183168.B.a #18	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000157669	ENSGT00940000157034	ENSGT00940000161085	ENSGT00940000160992	ENSGT00940000160504	ENSGT00940000167209	ENSGT00940000156761	ENSGT01100000263839	ENSGT00410000025596.a.b #26	ENSGT00390000002144 #25	ENSGT00940000164873	ENSGT00940000162094 #24	ENSGT00940000156139.ab #23	ENSGT00940000155019.a.a	ENSGT00960000189438
Anatidae	ANCESTRAL SPECIES	21	ENSGT00390000016565	ENSGT00960000189819	ENSGT00940000160747	ENSGT00940000156338	ENSGT00950000182900.B	ENSGT00390000007371	ENSGT00940000159398	ENSGT00530000063929.a.b	ENSGT01060000248564.b.a.a.a	ENSGT00950000182962.b.a	ENSGT00390000018883	ENSGT00940000163923.f.b	ENSGT00940000160073	ENSGT00950000183168.B.a #18	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000157669	ENSGT00940000157034	ENSGT00940000161085	ENSGT00940000160992	ENSGT00940000156761	ENSGT01100000263839	ENSGT00410000025596.a.b #26	ENSGT00390000002144 #25	ENSGT00940000164873	ENSGT00940000162094 #24	ENSGT00940000156139.ab #23	ENSGT00940000155019.a.a	ENSGT00960000189438	ENSGT00940000157833	ENSGT00530000063698.b
Pink-footed goose	MODERN SPECIES	73	SLC9A1 (ENSABRG00000001962)	WDTC1 (ENSABRG00000002008)	TMEM222 (ENSABRG00000002037)	MAP3K6 (ENSABRG00000002099)	CD164L2 (ENSABRG00000002608)	GPR3 (ENSABRG00000002622)	WASF2 (ENSABRG00000002634)	ENSABRG00000002652	AHDC1 (ENSABRG00000002665)	ENSABRG00000002676	ENSABRG00000002709	ENSABRG00000002732	FAM76A (ENSABRG00000002772)	SESN2 (ENSABRG00000002796) #18	PHACTR4 (ENSABRG00000002835) #21	RCC1 (ENSABRG00000002909) #22	OPRD1 (ENSABRG00000002932)	TCEA3 (ENSABRG00000002935)	ASAP3 (ENSABRG00000003095)	E2F2 (ENSABRG00000005175)
Duck	MODERN SPECIES	15	KDF1 (ENSAPLG00000010691)	ENSAPLG00000019975	ENSAPLG00000025590	TENT5B (ENSAPLG00000001361)	SLC9A1 (ENSAPLG00000016147)	WDTC1 (ENSAPLG00000015930)	TMEM222 (ENSAPLG00000021290)	ENSAPLG00000016993	ENSAPLG00000015805	WASF2 (ENSAPLG00000010236)	ENSAPLG00000022698	FAM76A (ENSAPLG00000004037)	SESN2 (ENSAPLG00000010959) #18	ENSAPLG00000022334	PHACTR4 (ENSAPLG00000019553) #21	RCC1 (ENSAPLG00000026840) #22	OPRD1 (ENSAPLG00000002972)	TCEA3 (ENSAPLG00000025037)	ENSAPLG00000018663	ENSAPLG00000031239	E2F2 (ENSAPLG00000021411)	YTHDF2 (ENSAPLG00000020468)	GMEB1 (ENSAPLG00000002955) #26	ENSAPLG00000016740	TAF12 (ENSAPLG00000002881) #25	ENSAPLG00000002659	RAB42 (ENSAPLG00000017350) #24	TRNAU1AP (ENSAPLG00000002606) #23	ENSAPLG00000002488	EPB41 (ENSAPLG00000016409)	TMEM200B (ENSAPLG00000023489)
Phasianidae	ANCESTRAL SPECIES	24	ENSGT00940000160747	ENSGT00940000156338	ENSGT00950000182900.B	ENSGT00390000007371	ENSGT00940000160932	ENSGT00940000159398	ENSGT00960000189365	ENSGT00950000182962.b.a	ENSGT00390000018883	ENSGT00940000157554	ENSGT00940000163923.f	ENSGT00940000163923.e	ENSGT00940000160073	ENSGT00950000183168.B.a #18	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000157669	ENSGT00940000157034	ENSGT00940000161085	ENSGT00940000160992	ENSGT00940000160504	ENSGT00940000167209	ENSGT00940000156761	ENSGT00410000025596.a.b #26	ENSGT00390000002144 #25	ENSGT00940000164873	ENSGT00950000183215.c.b	ENSGT00940000164027	ENSGT00940000159312	ENSGT00940000157118.c.a	ENSGT00390000016613.c
Phasianidae_b	ANCESTRAL SPECIES	23	ENSGT00940000160747	ENSGT00940000156338	ENSGT00950000182900.B	ENSGT00390000007371	ENSGT00940000160932	ENSGT00940000159398	ENSGT00960000189365	ENSGT00950000182962.b.a	ENSGT00390000018883	ENSGT00940000157554	ENSGT00940000163923.f	ENSGT00940000163923.e	ENSGT00940000160073	ENSGT00950000183168.B.a #18	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000157669	ENSGT00940000157034	ENSGT00940000161085	ENSGT00940000160992	ENSGT00940000160504	ENSGT00940000156761	ENSGT00410000025596.a.b #26	ENSGT00390000002144 #25	ENSGT00940000164873	ENSGT00950000183215.c.b	ENSGT00940000164027	ENSGT00940000159312	ENSGT00940000157118.c.a	ENSGT00390000016613.c	ENSGT00950000182844.a.b
Chicken	MODERN SPECIES	15	TENT5B (ENSGALG00010012654)	SLC9A1 (ENSGALG00010016793)	WDTC1 (ENSGALG00010016799)	TMEM222 (ENSGALG00010016802)	SYTL1 (ENSGALG00010016809)	MAP3K6 (ENSGALG00010016816)	ENSGALG00010016825	WASF2 (ENSGALG00010016849)	AHDC1 (ENSGALG00010016852)	FGR (ENSGALG00010016861)	ENSGALG00010018329	ENSGALG00010016870	FAM76A (ENSGALG00010018339)	SESN2 (ENSGALG00010016875) #18	PHACTR4 (ENSGALG00010016925) #21	RCC1 (ENSGALG00010016936) #22	OPRD1 (ENSGALG00010016944)	TCEA3 (ENSGALG00010016543)	ASAP3 (ENSGALG00010016556)	E2F2 (ENSGALG00010016567)	ID3 (ENSGALG00010016447)	ENSGALG00010015185	YTHDF2 (ENSGALG00010015166)	ENSGALG00010015248	GMEB1 (ENSGALG00010015314) #26	TAF12 (ENSGALG00010015384) #25	ENSGALG00010015440	MTFR1L (ENSGALG00010015486)	SELENON (ENSGALG00010015516)	MAN1C1 (ENSGALG00010015573)	LDLRAP1 (ENSGALG00010015605)
Turkey	MODERN SPECIES	17	ENSMGAG00000004237	ENSMGAG00000004270	GJA4 (ENSMGAG00000016540)	SMIM12 (ENSMGAG00000015709)	ENSMGAG00000004308	ENSMGAG00000021151	GJB3 (ENSMGAG00000022402)	ENSMGAG00000017784	ENSMGAG00000004314	ENSMGAG00000022234	ENSMGAG00000019066	ENSMGAG00000018005	ENSMGAG00000007923	ENSMGAG00000003845	ENSMGAG00000022036	ENSMGAG00000009632 #22	ENSMGAG00000001596	ENSMGAG00000016573 #21	ENSMGAG00000001699	ENSMGAG00000001535	SDC3 (ENSMGAG00000000717)	ENSMGAG00000021607	ENSMGAG00000000724	ENSMGAG00000019520	ENSMGAG00000021083	SNRNP40 (ENSMGAG00000000765)	ENSMGAG00000000794	ENSMGAG00000000777	ENSMGAG00000018093	ENSMGAG00000019972	SERINC2 (ENSMGAG00000000799)
Japanese quail	MODERN SPECIES	15	ENSCJPG00005016026	TENT5B (ENSCJPG00005016028)	SLC9A1 (ENSCJPG00005016029)	WDTC1 (ENSCJPG00005016030)	TMEM222 (ENSCJPG00005016031)	ENSCJPG00005016032	ENSCJPG00005016033	WASF2 (ENSCJPG00005016036)	AHDC1 (ENSCJPG00005016038)	FGR (ENSCJPG00005016042)	ENSCJPG00005016044	ENSCJPG00005016045	FAM76A (ENSCJPG00005016099)	SESN2 (ENSCJPG00005016100) #18	PHACTR4 (ENSCJPG00005016101) #21	RCC1 (ENSCJPG00005016103) #22	OPRD1 (ENSCJPG00005016105)	TCEA3 (ENSCJPG00005016106)	ASAP3 (ENSCJPG00005016116)	E2F2 (ENSCJPG00005016258)	ID3 (ENSCJPG00005016260)	ENSCJPG00005016261	YTHDF2 (ENSCJPG00005016262)	GMEB1 (ENSCJPG00005016263) #26	ENSCJPG00005016267	TAF12 (ENSCJPG00005016269) #25	ENSCJPG00005016270	MTFR1L (ENSCJPG00005016271)	ENSCJPG00005016272	MAN1C1 (ENSCJPG00005016273)	LDLRAP1 (ENSCJPG00005016298)
Neognathae_b	ANCESTRAL SPECIES	26	ENSGT00940000156338	ENSGT00950000182900.B	ENSGT00390000007371	ENSGT00940000160932	ENSGT00940000159398	ENSGT00530000063929.a.b	ENSGT01060000248564.b.a.a.a	ENSGT00950000182962.b.a	ENSGT00390000018883	ENSGT00940000157554	ENSGT00940000163923.f	ENSGT00940000163923.e	ENSGT00940000160073	ENSGT00950000183168.B.a #18	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000157669	ENSGT00940000157034	ENSGT00940000161085	ENSGT00940000160992	ENSGT00940000160504	ENSGT00940000167209	ENSGT00940000156761	ENSGT00410000025596.a.b #26	ENSGT00390000002144 #25	ENSGT00940000164873	ENSGT00940000162094 #24	ENSGT00940000156139.ab #23	ENSGT00940000155019.a.a	ENSGT00940000157833	ENSGT00530000063698.b
Neognathae_c	ANCESTRAL SPECIES	10	ENSGT00940000160723	ENSGT00940000158213	ENSGT00390000011776	ENSGT00390000000510	ENSGT00390000007279	ENSGT00940000157966	ENSGT00530000063320.B	ENSGT00940000156226	ENSGT00940000164855	ENSGT00940000155462	ENSGT00940000163923.f	ENSGT00940000163923.e	ENSGT00940000160073	ENSGT00950000183168.B.a #18	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000157669	ENSGT00940000157034.v	ENSGT00940000161085	ENSGT00940000160992	ENSGT00940000160504	ENSGT00940000167209	ENSGT00940000156761	ENSGT00410000025596.a.b #26	ENSGT00390000002144 #25	ENSGT00940000164873	ENSGT00940000162094 #24	ENSGT00940000156139.ab #23	ENSGT00940000155019.a.a	ENSGT00940000157833	ENSGT00530000063698.b
Golden eagle	MODERN SPECIES	7	SLC9A1 (ENSACCG00020009844)	WDTC1 (ENSACCG00020009856)	TMEM222 (ENSACCG00020009875)	SYTL1 (ENSACCG00020009888)	MAP3K6 (ENSACCG00020010161)	ENSACCG00020010410	GPR3 (ENSACCG00020010424)	WASF2 (ENSACCG00020010443)	AHDC1 (ENSACCG00020010469)	ENSACCG00020010496	ENSACCG00020010553	ENSACCG00020010590	FAM76A (ENSACCG00020010617)	SESN2 (ENSACCG00020010646) #18	PHACTR4 (ENSACCG00020010676) #21	RCC1 (ENSACCG00020010714) #22	OPRD1 (ENSACCG00020010727)	ENSACCG00020010744	ENSACCG00020010764	ASAP3 (ENSACCG00020010776)	E2F2 (ENSACCG00020010796)	ID3 (ENSACCG00020010811)	ENSACCG00020010823	YTHDF2 (ENSACCG00020010834)	GMEB1 (ENSACCG00020010845) #26	ENSACCG00020010861	TAF12 (ENSACCG00020010879) #25	ENSACCG00020010889	RAB42 (ENSACCG00020010898) #24	TRNAU1AP (ENSACCG00020008893) #23	ENSACCG00020008918
Kakapo	MODERN SPECIES	6			TENT5B (ENSSHBG00005007375)	SLC9A1 (ENSSHBG00005007382)	WDTC1 (ENSSHBG00005007394)	TMEM222 (ENSSHBG00005007411)	CD164L2 (ENSSHBG00005007438)	GPR3 (ENSSHBG00005007451)	WASF2 (ENSSHBG00005007459)	ENSSHBG00005007489	ENSSHBG00005007587	ENSSHBG00005007623	FAM76A (ENSSHBG00005007686)	SESN2 (ENSSHBG00005007712) #18	PHACTR4 (ENSSHBG00005007730) #21	RCC1 (ENSSHBG00005007765) #22	OPRD1 (ENSSHBG00005007780)	TCEA3 (ENSSHBG00005007790)	ENSSHBG00005007799	ASAP3 (ENSSHBG00005008310)	E2F2 (ENSSHBG00005017450)	ENSSHBG00005017452	ID3 (ENSSHBG00005017453)	YTHDF2 (ENSSHBG00005017454)	GMEB1 (ENSSHBG00005017456) #26	ENSSHBG00005017458	TAF12 (ENSSHBG00005017463) #25	ENSSHBG00005017467	TRNAU1AP (ENSSHBG00005000886) #23	ENSSHBG00005005399	LUZP1 (ENSSHBG00005005420)
Passeriformes	ANCESTRAL SPECIES	23	ENSGT00390000017418	ENSGT00940000160747	ENSGT00940000156338	ENSGT00950000182900.B	ENSGT00390000007371	ENSGT00940000160932	ENSGT00530000063929.a.b	ENSGT01060000248564.b.a.a.a	ENSGT00950000182962.b.a	ENSGT00390000018883	ENSGT00940000157554	ENSGT00940000163923.f	ENSGT00940000160073	ENSGT00950000183168.B.a #18	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000157669	ENSGT00940000157034	ENSGT00940000161085	ENSGT00940000160992	ENSGT00940000160504
Great tit	MODERN SPECIES	15	NUDC (ENSPMJG00000018420)	KDF1 (ENSPMJG00000018421)	TENT5B (ENSPMJG00000018423)	SLC9A1 (ENSPMJG00000018424)	WDTC1 (ENSPMJG00000018425)	TMEM222 (ENSPMJG00000018426)	SYTL1 (ENSPMJG00000018427)	ENSPMJG00000018428	WASF2 (ENSPMJG00000018431)	AHDC1 (ENSPMJG00000018432)	FGR (ENSPMJG00000018435)	ENSPMJG00000018436	FAM76A (ENSPMJG00000018437)	SESN2 (ENSPMJG00000018438) #18	PHACTR4 (ENSPMJG00000018439) #21	RCC1 (ENSPMJG00000018440) #22	OPRD1 (ENSPMJG00000018442)	TCEA3 (ENSPMJG00000018443)	ENSPMJG00000018444	E2F2 (ENSPMJG00000018445)	ID3 (ENSPMJG00000018446)	LDLRAP1 (ENSPMJG00000000050)	ENSPMJG00000000086	MACO1 (ENSPMJG00000000097)	ENSPMJG00000000112	TMEM50A (ENSPMJG00000000129)	RSRP1 (ENSPMJG00000000148)	SYF2 (ENSPMJG00000000170)	ENSPMJG00000000184	RUNX3 (ENSPMJG00000000197)	CLIC4 (ENSPMJG00000000208)
Passeriformes_d	ANCESTRAL SPECIES	23	ENSGT00390000017418	ENSGT00940000160747	ENSGT00940000156338	ENSGT00950000182900.B	ENSGT00390000007371	ENSGT00940000160932	ENSGT00530000063929.a.b	ENSGT01060000248564.b.a.a.a	ENSGT00950000182962.b.a	ENSGT00390000018883	ENSGT00940000157554	ENSGT00940000163923.f	ENSGT00940000160073	ENSGT00950000183168.B.a #18	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000157669	ENSGT00940000157034	ENSGT00940000161085	ENSGT00940000160992	ENSGT00940000160504
Passeriformes_g	ANCESTRAL SPECIES	22	ENSGT00940000160747.a	ENSGT00940000160747.b.a	ENSGT00940000156338	ENSGT00950000182900.B	ENSGT00390000007371	ENSGT00940000160932	ENSGT00530000063929.a.b	ENSGT01060000248564.b.a.a.a	ENSGT00950000182962.b.a	ENSGT00390000018883	ENSGT00940000157554	ENSGT00940000163923.f	ENSGT00940000160073	ENSGT00950000183168.B.a #18	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000157669	ENSGT00940000157034	ENSGT00940000165326	ENSGT00940000160992	ENSGT00940000160504
Medium ground finch	MODERN SPECIES	139	GPN2 (ENSGFOG00000006290)	GPATCH3 (ENSGFOG00000006273)	NUDC (ENSGFOG00000006257)	KDF1 (ENSGFOG00000006243)	TENT5B (ENSGFOG00000006235)	SLC9A1 (ENSGFOG00000006232)	WDTC1 (ENSGFOG00000006223)	TMEM222 (ENSGFOG00000006214)	CD164L2 (ENSGFOG00000006209)	WASF2 (ENSGFOG00000006201)	FGR (ENSGFOG00000006174)	ENSGFOG00000006139	FAM76A (ENSGFOG00000006127)	SESN2 (ENSGFOG00000006120) #18	PHACTR4 (ENSGFOG00000006113) #21	RCC1 (ENSGFOG00000006100) #22	ID3 (ENSGFOG00000006093)	E2F2 (ENSGFOG00000006080)	ENSGFOG00000006066	TCEA3 (ENSGFOG00000006059)	OPRD1 (ENSGFOG00000006052)
Passeroidea	ANCESTRAL SPECIES	22	ENSGT00940000160747.a	ENSGT00940000160747.b.a	ENSGT00940000156338	ENSGT00950000182900.B	ENSGT00390000007371	ENSGT00940000160932	ENSGT00530000063929.a.b	ENSGT01060000248564.b.a.a.a	ENSGT00950000182962.b.a	ENSGT00390000018883	ENSGT00940000157554	ENSGT00940000163923.f	ENSGT00940000160073	ENSGT00950000183168.B.a #18	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000157669	ENSGT00940000157034	ENSGT00940000165326	ENSGT00940000160992	ENSGT00940000160504
Zebra finch	MODERN SPECIES	16	KDF1 (ENSTGUG00000000978)	TRNP1 (ENSTGUG00000027930)	TENT5B (ENSTGUG00000000977)	SLC9A1 (ENSTGUG00000000976)	WDTC1 (ENSTGUG00000000973)	SYTL1 (ENSTGUG00000025002)	ENSTGUG00000023189	GPR3 (ENSTGUG00000000969)	WASF2 (ENSTGUG00000000966)	AHDC1 (ENSTGUG00000022877)	ENSTGUG00000000957	ENSTGUG00000000955	FAM76A (ENSTGUG00000000951)	SESN2 (ENSTGUG00000000945) #18	PHACTR4 (ENSTGUG00000000943) #21	RCC1 (ENSTGUG00000000940) #22	OPRD1 (ENSTGUG00000000934)	TCEA3 (ENSTGUG00000000930)	ENSTGUG00000000911	E2F2 (ENSTGUG00000000907)	ID3 (ENSTGUG00000000904)	HNRNPR (ENSTGUG00000000880)	ENSTGUG00000000899	DNAJC8 (ENSTGUG00000000890) #16	PTAFR (ENSTGUG00000023079)	EYA3 (ENSTGUG00000000872) #13	XKR8 (ENSTGUG00000000870) #12	RPA2 (ENSTGUG00000000866) #10	SMPDL3B (ENSTGUG00000000856) #11	PPP1R8 (ENSTGUG00000000851) #8	STX12 (ENSTGUG00000000844) #7
Common canary	MODERN SPECIES	65	KDF1 (ENSSCAG00000007336)	ENSSCAG00000007342	SLC9A1 (ENSSCAG00000007437)	WDTC1 (ENSSCAG00000007881)	TMEM222 (ENSSCAG00000007892)	SYTL1 (ENSSCAG00000007895)	ENSSCAG00000007899	GPR3 (ENSSCAG00000007910)	WASF2 (ENSSCAG00000007921)	AHDC1 (ENSSCAG00000007925)	FGR (ENSSCAG00000007933)	ENSSCAG00000007964	FAM76A (ENSSCAG00000007969)	SESN2 (ENSSCAG00000007973) #18	PHACTR4 (ENSSCAG00000007987) #21	RCC1 (ENSSCAG00000007998) #22	OPRD1 (ENSSCAG00000008006)	TCEA3 (ENSSCAG00000008008)	ENSSCAG00000008039	E2F2 (ENSSCAG00000008329)	ID3 (ENSSCAG00000008336)
Flycatcher	MODERN SPECIES	15	NR0B2 (ENSFALG00000006497)	NUDC (ENSFALG00000006516)	KDF1 (ENSFALG00000006529)	TENT5B (ENSFALG00000014519)	SLC9A1 (ENSFALG00000000683)	ENSFALG00000023022	WDTC1 (ENSFALG00000000691)	SYTL1 (ENSFALG00000000694)	CD164L2 (ENSFALG00000023339)	GPR3 (ENSFALG00000000702)	WASF2 (ENSFALG00000000708)	FGR (ENSFALG00000002793)	ENSFALG00000002817	SESN2 (ENSFALG00000010708) #18	PHACTR4 (ENSFALG00000010715) #21	RCC1 (ENSFALG00000010730) #22	TCEA3 (ENSFALG00000010750)	ASAP3 (ENSFALG00000010769)	E2F2 (ENSFALG00000010803)	ID3 (ENSFALG00000010806)
African ostrich	MODERN SPECIES	1061									ENSSCUG00000019140	ENSSCUG00000019141	ENSSCUG00000019142	ENSSCUG00000019143	FAM76A (ENSSCUG00000019144)	SESN2 (ENSSCUG00000019145) #18	PHACTR4 (ENSSCUG00000019146) #21	RCC1 (ENSSCUG00000019147) #22	OPRD1 (ENSSCUG00000019150)	ENSSCUG00000019151	E2F2 (ENSSCUG00000019152)	CATSPER4 (ENSSCUG00000019153)
Australian saltwater crocodile	MODERN SPECIES	58	ENSCPRG00005003408	SYTL1 (ENSCPRG00005003362)	MAP3K6 (ENSCPRG00005003286)	CD164L2 (ENSCPRG00005003266)	GPR3 (ENSCPRG00005003261)	WASF2 (ENSCPRG00005003258)	AHDC1 (ENSCPRG00005003254)	ENSCPRG00005003238	ENSCPRG00005003225	ENSCPRG00005003223	ENSCPRG00005003220	ENSCPRG00005003204	FAM76A (ENSCPRG00005003198)	SESN2 (ENSCPRG00005003191) #18	PHACTR4 (ENSCPRG00005003163) #21	RCC1 (ENSCPRG00005003145) #22	OPRD1 (ENSCPRG00005003124)	TCEA3 (ENSCPRG00005003102)	ASAP3 (ENSCPRG00005003050)	E2F2 (ENSCPRG00005003031)	CATSPER4 (ENSCPRG00005003024)	YTHDF2 (ENSCPRG00005003013)	ENSCPRG00005003009	CCT8L2 (ENSCPRG00005003003)	RHBDL2 (ENSCPRG00005002996)	GJA9 (ENSCPRG00005002991)	MYCBP (ENSCPRG00005002986)	RRAGC (ENSCPRG00005002919)	ENSCPRG00005002914	UTP11 (ENSCPRG00005002913)	FHL3 (ENSCPRG00005002908)
Cryptodira	ANCESTRAL SPECIES	50												ENSGT00940000161215.hc.b	ENSGT00940000160073	ENSGT00950000183168.B.a #18	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000157669	ENSGT00990000210108	ENSGT00940000157034	ENSGT00940000161085	ENSGT00940000160992	ENSGT00940000161879	ENSGT00940000160504	ENSGT00940000167209	ENSGT00940000156761	ENSGT00410000025596.a.b #26	ENSGT00390000002144 #25	ENSGT00940000164873	ENSGT00940000162094 #24	ENSGT00940000156139.ab #23	ENSGT00940000155019.a.a
Testudinoidea	ANCESTRAL SPECIES	12	ENSGT00390000007279	ENSGT00940000157966	ENSGT00530000063320.B	ENSGT00940000156226	ENSGT00940000164855	ENSGT00940000155462	ENSGT00940000163923.f	ENSGT00940000163923.e.d	ENSGT00940000163923.e.c	ENSGT00940000163282.j	ENSGT00940000163178	ENSGT00940000161215.hc.b	ENSGT00940000160073	ENSGT00950000183168.B.a #18	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000157669	ENSGT00990000210108	ENSGT00940000157034	ENSGT00940000161085	ENSGT00940000160992	ENSGT00940000161879	ENSGT00940000160504	ENSGT00940000167209	ENSGT00940000156761	ENSGT00410000025596.a.b #26	ENSGT00390000002144 #25	ENSGT00940000164873	ENSGT00940000162094 #24	ENSGT00940000156139.ab #23	ENSGT00940000155019.a.a
Emydidae	ANCESTRAL SPECIES	8	ENSGT00390000007279	ENSGT00940000157966	ENSGT00530000063320.B	ENSGT00940000156226	ENSGT00940000164855	ENSGT00940000155462	ENSGT00940000163923.f	ENSGT00940000163923.e.d	ENSGT00940000163923.e.c	ENSGT00940000163282.j	ENSGT00940000163178	ENSGT00940000161215.hc.b	ENSGT00940000160073	ENSGT00950000183168.B.a #18	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000157669	ENSGT00990000210108	ENSGT00940000157034	ENSGT00940000161085	ENSGT00940000160992	ENSGT00940000161879	ENSGT00940000160504	ENSGT00940000167209	ENSGT00940000156761	ENSGT00410000025596.a.b #26	ENSGT00390000002144 #25	ENSGT00940000164873	ENSGT00940000162094 #24	ENSGT00940000156139.ab #23	ENSGT00940000155019.a.a
Three-toed box turtle	MODERN SPECIES	111	GPR3 (ENSTMTG00000012809)	WASF2 (ENSTMTG00000012789)	ENSTMTG00000012779	AHDC1 (ENSTMTG00000012770)	ENSTMTG00000012746	ENSTMTG00000012717	ENSTMTG00000012703	ENSTMTG00000012689	ENSTMTG00000012680	ENSTMTG00000012637	IFI6 (ENSTMTG00000012623)	ENSTMTG00000012595	FAM76A (ENSTMTG00000012563)	SESN2 (ENSTMTG00000012540) #18	PHACTR4 (ENSTMTG00000012459) #21	RCC1 (ENSTMTG00000012408) #22	OPRD1 (ENSTMTG00000012388)	ENSTMTG00000012357	ENSTMTG00000012345	ENSTMTG00000012313	ENSTMTG00000012260	E2F2 (ENSTMTG00000012225)	CATSPER4 (ENSTMTG00000012107)	ID3 (ENSTMTG00000012078)	ENSTMTG00000012062	YTHDF2 (ENSTMTG00000012040)	GMEB1 (ENSTMTG00000012025) #26	ENSTMTG00000011990	TAF12 (ENSTMTG00000011959) #25	ENSTMTG00000011945	RAB42 (ENSTMTG00000011941) #24
painted turtle	MODERN SPECIES	713												ENSCPBG00000011190	FAM76A (ENSCPBG00000011191)	SESN2 (ENSCPBG00000011193) #18	PHACTR4 (ENSCPBG00000011194) #21	RCC1 (ENSCPBG00000011198) #22	OPRD1 (ENSCPBG00000011201)	ENSCPBG00000011202	ENSCPBG00000011203	ENSCPBG00000011204	ENSCPBG00000011205	ENSCPBG00000011206	ENSCPBG00000011207	ASAP3 (ENSCPBG00000011209)	E2F2 (ENSCPBG00000011214)	CATSPER4 (ENSCPBG00000011215)	ID3 (ENSCPBG00000011218)	ENSCPBG00000011219	YTHDF2 (ENSCPBG00000011221)	GMEB1 (ENSCPBG00000011222) #26	ENSCPBG00000011226
Testudinidae	ANCESTRAL SPECIES	53	ENSGT00940000157531.k	ENSGT00530000063929.a.b	ENSGT01060000248564.b.a.a.a	ENSGT00950000182962.b.a	ENSGT00390000018883	ENSGT00940000157554	ENSGT00940000163923.f	ENSGT00940000163923.e.d	ENSGT00940000163923.e.c	ENSGT00940000163282.j	ENSGT00940000163178	ENSGT00940000161215.hc.b	ENSGT00940000160073	ENSGT00950000183168.B.a #18	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000157669	ENSGT00940000157034	ENSGT00940000161085	ENSGT00940000160992	ENSGT00940000161879	ENSGT00940000160504	ENSGT00940000167209	ENSGT00940000156761	ENSGT00410000025596.a.b #26	ENSGT00390000002144 #25	ENSGT00940000164873	ENSGT00940000162094 #24	ENSGT00940000156139.ab #23	ENSGT00940000155019.a.a	ENSGT00940000157833
Abingdon island giant tortoise	MODERN SPECIES	2225	GPR3 (ENSCABG00000009844)	WASF2 (ENSCABG00000009843)	AHDC1 (ENSCABG00000009842)	FGR (ENSCABG00000009837)	ENSCABG00000009835	ENSCABG00000009830	ENSCABG00000009828	ENSCABG00000009827	IFI6 (ENSCABG00000009824)	ENSCABG00000009820	FAM76A (ENSCABG00000009817)	SESN2 (ENSCABG00000009813) #18	ENSCABG00000009810	ENSCABG00000009809	PHACTR4 (ENSCABG00000009807) #21	RCC1 (ENSCABG00000009802) #22	OPRD1 (ENSCABG00000009799)	ENSCABG00000009795	ENSCABG00000009793	ENSCABG00000009791	ASAP3 (ENSCABG00000009781)	E2F2 (ENSCABG00000009772)	CATSPER4 (ENSCABG00000009764)	ID3 (ENSCABG00000009760)	ENSCABG00000009758	YTHDF2 (ENSCABG00000009756)	GMEB1 (ENSCABG00000009700) #26	ENSCABG00000009697	TAF12 (ENSCABG00000009693) #25	ENSCABG00000009691	RAB42 (ENSCABG00000009620) #24
Goode s thornscrub tortoise	MODERN SPECIES	12	SYTL1 (ENSGEVG00005004336)	MAP3K6 (ENSGEVG00005004395)	ENSGEVG00005004509	CD164L2 (ENSGEVG00005004553)	GPR3 (ENSGEVG00005004575)	WASF2 (ENSGEVG00005004635)	AHDC1 (ENSGEVG00005004682)	FGR (ENSGEVG00005004709)	ENSGEVG00005004746	ENSGEVG00005004770	ENSGEVG00005004831	ENSGEVG00005004911	ENSGEVG00005004945	SESN2 (ENSGEVG00005005043) #18	PHACTR4 (ENSGEVG00005005142) #21	RCC1 (ENSGEVG00005005188) #22	OPRD1 (ENSGEVG00005005214)	ENSGEVG00005005245	ENSGEVG00005005264	ENSGEVG00005005311	ENSGEVG00005005358	E2F2 (ENSGEVG00005005385)	CATSPER4 (ENSGEVG00005005464)	ID3 (ENSGEVG00005005643)	ENSGEVG00005005669	YTHDF2 (ENSGEVG00005005693)	GMEB1 (ENSGEVG00005005710) #26	TAF12 (ENSGEVG00005005747) #25	ENSGEVG00005005767	RAB42 (ENSGEVG00005005806) #24	TRNAU1AP (ENSGEVG00005005844) #23
Chinese turtle	MODERN SPECIES	933												ENSPSIG00000001652	FAM76A (ENSPSIG00000013722)	SESN2 (ENSPSIG00000010507) #18	PHACTR4 (ENSPSIG00000009190) #21	RCC1 (ENSPSIG00000009106) #22
Lepidosauria	ANCESTRAL SPECIES	18	ENSGT00940000160932	ENSGT00940000159398	ENSGT00940000157531	ENSGT00530000063929.a.b	ENSGT01060000248564.b.a.a.a	ENSGT00950000182962.b.a	ENSGT00390000018883	ENSGT00940000157554	ENSGT00940000163923.f	ENSGT00940000163923.e	ENSGT00940000163282.k.a	ENSGT00940000160073	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000157669	ENSGT00940000157034	ENSGT00940000161085	ENSGT00940000160992.b	ENSGT00940000161879	ENSGT00940000160504	ENSGT00940000167209	ENSGT00940000156761	ENSGT01100000263839	ENSGT00410000025596.a.b #26	ENSGT00390000002144 #25	ENSGT00940000164873	ENSGT00940000162094 #24	ENSGT00940000156139.ab #23	ENSGT00940000155019.a.a
Episquamata	ANCESTRAL SPECIES	7	ENSGT00940000160932	ENSGT00940000159398	ENSGT00940000157531	ENSGT00530000063929.a.b	ENSGT01060000248564.b.a.a.a	ENSGT00950000182962.b.a	ENSGT00390000018883	ENSGT00940000157554	ENSGT00940000163923.f	ENSGT00940000163923.e	ENSGT00940000163282.k.a	ENSGT00940000160073	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000157669	ENSGT00940000157034	ENSGT00940000161085	ENSGT00940000160992.b	ENSGT00940000161879	ENSGT00940000160504	ENSGT00940000167209	ENSGT00940000156761	ENSGT01100000263839	ENSGT00410000025596.a.b #26	ENSGT00390000002144 #25	ENSGT00940000164873	ENSGT00940000162094 #24	ENSGT00940000156139.ab #23	ENSGT00940000155019.a.a
Toxicofera	ANCESTRAL SPECIES	24	ENSGT00390000007371	ENSGT00940000154868.a.b	ENSGT00940000160932	ENSGT00940000159398	ENSGT00530000063929.a.b	ENSGT01060000248564.b.a.a.a	ENSGT00950000182962.b.a	ENSGT00390000018883	ENSGT00940000157554	ENSGT00940000163923.f	ENSGT00940000163923.e	ENSGT00940000160073	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000157669	ENSGT00940000157034	ENSGT00940000161085	ENSGT00940000160992.b	ENSGT00940000160992.a	ENSGT00940000161879	ENSGT00940000160504	ENSGT00940000167209	ENSGT00940000156761	ENSGT01100000263839	ENSGT00410000025596.a.b #26	ENSGT00390000002144 #25	ENSGT00940000164873	ENSGT00940000162094 #24	ENSGT00940000156139.ab #23
Elapidae	ANCESTRAL SPECIES	9	ENSGT00390000007371	ENSGT00940000154868.a.b	ENSGT00940000160932	ENSGT00940000159398.g	ENSGT00530000063929.a.b	ENSGT01060000248564.b.a.a.a	ENSGT00950000182962.b.a	ENSGT00390000018883	ENSGT00940000157554	ENSGT00940000163923.f	ENSGT00940000163923.e	ENSGT00940000160073	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00940000157582.a #21	ENSGT00940000155543 #22	ENSGT00940000157669	ENSGT00940000157034	ENSGT00940000161085	ENSGT00940000160992.b	ENSGT00940000161879	ENSGT00940000160504	ENSGT00940000167209	ENSGT00940000156761.e	ENSGT01100000263839	ENSGT00940000156761.f	ENSGT00410000025596.a.b #26	ENSGT00390000002144 #25	ENSGT00940000164873	ENSGT00940000162094 #24	ENSGT01010000229478
Elapidae_a	ANCESTRAL SPECIES	15	ENSGT00390000007371	ENSGT00940000154868.a.b	ENSGT00940000160932	ENSGT00940000159398.g	ENSGT00960000189365	ENSGT01060000248564.b.a.a.a	ENSGT00950000182962.b.a	ENSGT00390000018883	ENSGT00940000157554	ENSGT00940000163923.f	ENSGT00940000163923.e	ENSGT00940000160073	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00940000157582.a #21	ENSGT00940000155543 #22	ENSGT00940000157669	ENSGT00940000157034	ENSGT00940000161085	ENSGT00940000160992.b	ENSGT00940000160992.a	ENSGT00940000161879	ENSGT00940000160504	ENSGT00940000167209	ENSGT00940000156761.e	ENSGT01100000263839	ENSGT00410000025596.a.b #26	ENSGT00940000157334	ENSGT00390000002144 #25	ENSGT00940000164873	ENSGT00940000162094 #24
Acanthophiinae	ANCESTRAL SPECIES	22	ENSGT00390000007371	ENSGT00940000154868.a.b	ENSGT00940000160932	ENSGT00940000159398.g	ENSGT00960000189365	ENSGT01060000248564.b.a.a.a	ENSGT00950000182962.b.a	ENSGT00390000018883	ENSGT00940000157554	ENSGT00940000163923.f	ENSGT00940000163923.e	ENSGT00940000160073	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00940000157582.a #21	ENSGT00940000155543 #22	ENSGT00940000157669	ENSGT00940000157034	ENSGT00940000161085	ENSGT00940000160992.b	ENSGT00940000160992.a	ENSGT00940000161879	ENSGT00940000160504	ENSGT00940000167209	ENSGT00940000156761.e	ENSGT01100000263839	ENSGT00410000025596.a.b #26	ENSGT00390000002144 #25	ENSGT00940000164873	ENSGT00940000162094 #24	ENSGT01010000229478
Mainland tiger snake	MODERN SPECIES	80	WDTC1 (ENSNSUG00000013895)	TMEM222 (ENSNSUG00000013896)	ENSNSUG00000013897	SYTL1 (ENSNSUG00000013898)	ENSNSUG00000013899	GPR3 (ENSNSUG00000013900)	WASF2 (ENSNSUG00000013901)	AHDC1 (ENSNSUG00000013903)	ENSNSUG00000013905	ENSNSUG00000013906	ENSNSUG00000013907	FAM76A (ENSNSUG00000013908)	MED18 (ENSNSUG00000013910) #19	ENSNSUG00000013911 #21	ENSNSUG00000013912 #21	RCC1 (ENSNSUG00000013917) #22	OPRD1 (ENSNSUG00000013918)	ENSNSUG00000013922	ENSNSUG00000013923	ASAP3 (ENSNSUG00000013924)	E2F2 (ENSNSUG00000014009)	ID3 (ENSNSUG00000014010)	ENSNSUG00000014011	ENSNSUG00000014013	ENSNSUG00000014014	GMEB1 (ENSNSUG00000014015) #26	TAF12 (ENSNSUG00000014023) #25	ENSNSUG00000014024	TRNAU1AP (ENSNSUG00000014043) #23	ENSNSUG00000014044	EPB41 (ENSNSUG00000014045)
Eastern brown snake	MODERN SPECIES	19	TMEM222 (ENSPTXG00000005490)	ENSPTXG00000005488	SYTL1 (ENSPTXG00000005487)	MAP3K6 (ENSPTXG00000005442)	ENSPTXG00000005429	GPR3 (ENSPTXG00000005428)	WASF2 (ENSPTXG00000005425)	AHDC1 (ENSPTXG00000005424)	FGR (ENSPTXG00000005421)	ENSPTXG00000005419	ENSPTXG00000005416	FAM76A (ENSPTXG00000005413)	SESN2 (ENSPTXG00000005410) #18	MED18 (ENSPTXG00000005408) #19	PHACTR4 (ENSPTXG00000005405) #21	RCC1 (ENSPTXG00000005400) #22	OPRD1 (ENSPTXG00000005399)	ENSPTXG00000005398	ENSPTXG00000005396	ASAP3 (ENSPTXG00000005395)	ENSPTXG00000005393	ENSPTXG00000005389	CATSPER4 (ENSPTXG00000005377)	ID3 (ENSPTXG00000005376)	ENSPTXG00000005374	ENSPTXG00000005370	GMEB1 (ENSPTXG00000005369) #26	TAF12 (ENSPTXG00000005367) #25	ENSPTXG00000005366	ENSPTXG00000005365 #24	ENSPTXG00000005364
Blue-lipped sea krait	MODERN SPECIES	4424																RCC1 (ENSLLTG00000007108) #22
Indian cobra	MODERN SPECIES	11	TMEM222 (ENSNNAG00000003679)	ENSNNAG00000003700	SYTL1 (ENSNNAG00000003725)	MAP3K6 (ENSNNAG00000003752)	CD164L2 (ENSNNAG00000003877)	GPR3 (ENSNNAG00000003904)	WASF2 (ENSNNAG00000003926)	AHDC1 (ENSNNAG00000003964)	FGR (ENSNNAG00000004005)	ENSNNAG00000004086	ENSNNAG00000004121	FAM76A (ENSNNAG00000004205)	SESN2 (ENSNNAG00000004318) #18	PHACTR4 (ENSNNAG00000004401) #21	MED18 (ENSNNAG00000004457) #19	RCC1 (ENSNNAG00000004513) #22	OPRD1 (ENSNNAG00000004544)	TCEA3 (ENSNNAG00000004558)	ASAP3 (ENSNNAG00000004607)	ENSNNAG00000004689	ENSNNAG00000004700	ENSNNAG00000004723	ID3 (ENSNNAG00000004796)	YTHDF2 (ENSNNAG00000004825)	GMEB1 (ENSNNAG00000004843) #26	ENSNNAG00000004892	TAF12 (ENSNNAG00000004920) #25	ENSNNAG00000004943	ENSNNAG00000004959 #24	ENSNNAG00000004983	TRNAU1AP (ENSNNAG00000005026) #23
Lizard	MODERN SPECIES	1495																ENSACAG00000005128 #22	OPRD1 (ENSACAG00000040477)	ENSACAG00000005034	ENSACAG00000004855
Laterata	ANCESTRAL SPECIES	27	ENSGT00940000154868.a.b	ENSGT00940000160932	ENSGT00940000159398	ENSGT00940000157531	ENSGT00530000063929.a.b	ENSGT01060000248564.b.a.a.a	ENSGT00950000182962.b.a	ENSGT00390000018883	ENSGT00940000163923.f	ENSGT00940000163923.e	ENSGT00940000163282.k.a	ENSGT00940000160073	ENSGT00950000183168.B.a #18	ENSGT00390000003312 #19	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000157669	ENSGT00940000157034	ENSGT00940000161085	ENSGT00940000160992.b	ENSGT00940000161879	ENSGT00940000160504	ENSGT00940000167209	ENSGT00940000156761	ENSGT00410000025596.a.b #26	ENSGT00390000002144 #25	ENSGT00940000164873	ENSGT00940000162094 #24	ENSGT00940000156139.ab #23	ENSGT00940000155019.a.a	ENSGT00940000157833
Common wall lizard	MODERN SPECIES	16	SESN2 (ENSPMRG00000009161) #18	FAM76A (ENSPMRG00000009135)	ENSPMRG00000009120	ENSPMRG00000009115	ENSPMRG00000009104	ENSPMRG00000009089	ENSPMRG00000009078	AHDC1 (ENSPMRG00000009067)	WASF2 (ENSPMRG00000009056)	GPR3 (ENSPMRG00000009045)	CD164L2 (ENSPMRG00000009039)	ENSPMRG00000009031	MAP3K6 (ENSPMRG00000008995)	SYTL1 (ENSPMRG00000008979)	ENSPMRG00000008962	RCC1 (ENSPMRG00000008955) #22	OPRD1 (ENSPMRG00000008949)	ENSPMRG00000008946	TCEA3 (ENSPMRG00000008935)	ASAP3 (ENSPMRG00000008909)	E2F2 (ENSPMRG00000008903)	ENSPMRG00000008896	ENSPMRG00000008893	ENSPMRG00000008891	YTHDF2 (ENSPMRG00000008884)	GMEB1 (ENSPMRG00000008864) #26	ENSPMRG00000008846	TAF12 (ENSPMRG00000008840) #25	ENSPMRG00000008838	RAB42 (ENSPMRG00000008831) #24	TRNAU1AP (ENSPMRG00000008815) #23
Argentine black and white tegu	MODERN SPECIES	53	SYTL1 (ENSSMRG00000002437)	MAP3K6 (ENSSMRG00000002451)	ENSSMRG00000002456	CD164L2 (ENSSMRG00000002466)	GPR3 (ENSSMRG00000002473)	WASF2 (ENSSMRG00000002478)	AHDC1 (ENSSMRG00000002496)	ENSSMRG00000002513	ENSSMRG00000002524	ENSSMRG00000002537	ENSSMRG00000002539	FAM76A (ENSSMRG00000002548)	SESN2 (ENSSMRG00000002553) #18	MED18 (ENSSMRG00000002592) #19	PHACTR4 (ENSSMRG00000002722) #21	RCC1 (ENSSMRG00000002729) #22	OPRD1 (ENSSMRG00000002731)	ENSSMRG00000002734	ENSSMRG00000002735	ASAP3 (ENSSMRG00000002736)	E2F2 (ENSSMRG00000002739)	ENSSMRG00000002742	ID3 (ENSSMRG00000002801)	ENSSMRG00000002803	YTHDF2 (ENSSMRG00000002820)	GMEB1 (ENSSMRG00000002821) #26	ENSSMRG00000002828	TAF12 (ENSSMRG00000002837) #25	ENSSMRG00000002838	RAB42 (ENSSMRG00000002842) #24	ENSSMRG00000002843
tuatara	MODERN SPECIES	65														MED18 (ENSSPUG00000009470) #19	PHACTR4 (ENSSPUG00000009480) #21	RCC1 (ENSSPUG00000009530) #22	ENSSPUG00000009587
Anura	ANCESTRAL SPECIES	82	ENSGT00950000182978.B #13	ENSGT01060000248589.D	ENSGT00390000012569.a #16	ENSGT00940000158079	ENSGT00940000159949	ENSGT00940000155058	ENSGT00510000047363	ENSGT00940000155104	ENSGT01030000235111	ENSGT01030000234623.a.a.b	ENSGT00940000157218.C	ENSGT00950000183053.A	ENSGT00940000161401	ENSGT00940000157999	ENSGT00910000144179.b.b	ENSGT00940000155543 #22	ENSGT00940000161085	ENSGT00940000160504	ENSGT00940000167209	ENSGT00940000156761	ENSGT00410000025596.a.b #26	ENSGT00390000002144 #25	ENSGT00940000164873	ENSGT00940000157833	ENSGT00530000063698.b	ENSGT00940000158264.b	ENSGT00940000167907	ENSGT00940000156213	ENSGT00940000156592	ENSGT00940000157151	ENSGT00940000159638
Leishan spiny toad	MODERN SPECIES	5	PUM1 (ENSLLEG00000001911)	ENSLLEG00000001967	NKAIN1 (ENSLLEG00000001985)	SNRNP40 (ENSLLEG00000002037)	ENSLLEG00000002126	ENSLLEG00000002196	ENSLLEG00000002232	EDN2 (ENSLLEG00000002275)	ENSLLEG00000002296	ENSLLEG00000002309	FOXO6 (ENSLLEG00000002327)	ENSLLEG00000002339	ENSLLEG00000002344	SCMH1 (ENSLLEG00000002360)	CTPS1 (ENSLLEG00000002406)	RCC1 (ENSLLEG00000002483) #22	ENSLLEG00000002500	ENSLLEG00000002527	ENSLLEG00000002590	ENSLLEG00000002605	ENSLLEG00000002629	OPRD1 (ENSLLEG00000002642)	ENSLLEG00000002669	ENSLLEG00000002768	ENSLLEG00000002804	ENSLLEG00000002822	ID3 (ENSLLEG00000002864)	ENSLLEG00000002880	ENSLLEG00000002892	YTHDF2 (ENSLLEG00000002900)	GMEB1 (ENSLLEG00000002920) #26
Frog	MODERN SPECIES	2	dnajc8 (ENSXETG00000012902) #16	pum1 (ENSXETG00000012904)	nkain1 (ENSXETG00000012908)	snrnp40 (ENSXETG00000012910)	zcchc17 (ENSXETG00000012917)	fabp3 (ENSXETG00000012916)	ENSXETG00000037994	serinc2 (ENSXETG00000012918)	hivep3 (ENSXETG00000035857)	edn2 (ENSXETG00000041205)	ENSXETG00000042165	ENSXETG00000048943	FOXO6 (ENSXETG00000012944)	scmh1 (ENSXETG00000012966)	ctps1 (ENSXETG00000012949)	rcc1 (ENSXETG00000012969) #22	oprd1 (ENSXETG00000033842)	tcea3 (ENSXETG00000012975)	ENSXETG00000020617	taf12 (ENSXETG00000020616) #25	rab39a (ENSXETG00000020622)	gmeb1 (ENSXETG00000020625) #26	ythdf2 (ENSXETG00000020636)	gngt2.1 (ENSXETG00000030624)	msra.2 (ENSXETG00000020629)	id3 (ENSXETG00000020653)	sesn2 (ENSXETG00000020644) #21	fgr (ENSXETG00000020659)	ahdc1 (ENSXETG00000018716)	wasf2 (ENSXETG00000003647)	wdtc1 (ENSXETG00000020662)
Coelacanth	DUPLICATION
Coelacanth	MODERN SPECIES	306	MAP3K6 (ENSLACG00000015267)	ENSLACG00000015555	ENSLACG00000015622	ENSLACG00000015719	GPR3 (ENSLACG00000022227)	WASF2 (ENSLACG00000016132)	ENSLACG00000016242	AHDC1 (ENSLACG00000016403)	ENSLACG00000016880	FGR (ENSLACG00000016907)	FAM76A (ENSLACG00000017154)	zgc:110239 (ENSLACG00000017200)	SESN2 (ENSLACG00000017259) #18	MED18 (ENSLACG00000017315) #19	PHACTR4 (ENSLACG00000017437) #21	RCC1 (ENSLACG00000017540) #22	TRAM2 (ENSLACG00000017648)	EFHC1 (ENSLACG00000017717)	NCOA1 (ENSLACG00000017956)	PTRHD1 (ENSLACG00000018052)	CENPO (ENSLACG00000022674)
Coelacanth	MODERN SPECIES	2020													MTFR1L (ENSLACG00000000055)	ENSLACG00000001985	selenon (ENSLACG00000003304)	ENSLACG00000003772 #22	znf593 (ENSLACG00000004262)	RLF (ENSLACG00000004383)	ENSLACG00000022646	ZMPSTE24 (ENSLACG00000006600)	TMEM30B (ENSLACG00000007040)	KDM1A (ENSLACG00000007376)	LUZP1 (ENSLACG00000008313)
Actinopterygii	ANCESTRAL SPECIES	72	ENSGT01060000248564.b.a.a.a	ENSGT00950000182962.b.a	ENSGT00950000183168.B.a #18	ENSGT00940000159638	ENSGT00940000160209	ENSGT00940000158079	ENSGT00940000159949	ENSGT00940000155058	ENSGT00510000047363	ENSGT00940000155104	ENSGT01030000235111	ENSGT01030000234623.a.a.b	ENSGT00940000157218.C	ENSGT00950000183053.A	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000157669	ENSGT00940000155393.d	ENSGT00940000157034	ENSGT00940000165326	ENSGT00940000155115.a.b	ENSGT00940000160992	ENSGT00940000160504	ENSGT00940000167209	ENSGT00940000156761	ENSGT01100000263839	ENSGT00530000063353.a.a	ENSGT00940000163885	ENSGT00940000165937	ENSGT00940000157330	ENSGT01060000248589.D
Neopterygii	ANCESTRAL SPECIES	56	ENSGT00940000157999	ENSGT00410000025651.B	ENSGT00530000063624.C	ENSGT00910000144179.b.b	ENSGT00940000164873	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT00940000157151.c	ENSGT00940000164800	ENSGT00940000161438	ENSGT01030000234597.b.a.b	ENSGT01030000234623.a.a.b	ENSGT00940000157218.B	ENSGT00950000183053.A	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000157669	ENSGT00940000157034	ENSGT00940000165028	ENSGT00940000156585.c.b	ENSGT00940000156585.c.a	ENSGT00390000013174	ENSGT00940000155194	ENSGT00940000166269	ENSGT00950000183172.B	ENSGT00390000004191	ENSGT00940000155361	ENSGT00390000015719.c	ENSGT00390000016565	ENSGT00940000154868.a.b	ENSGT00390000007371
Osteoglossocephalai	ANCESTRAL SPECIES	229												ENSGT00940000161438	ENSGT01030000234623.a.a.b.a	ENSGT00950000183053.A.a.b	ENSGT00940000157582.g #21	ENSGT00940000155543 #22	ENSGT00940000157669	ENSGT00940000157034	ENSGT00940000165028	ENSGT00940000156585.c.a	ENSGT00390000013174	ENSGT00940000155194	ENSGT00940000166269	ENSGT00950000183172.B	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b
Clupeocephala	ANCESTRAL SPECIES	204	ENSGT00940000164800	ENSGT00410000025596.a.b.a #26	ENSGT00940000178073	ENSGT00940000157151.c	ENSGT00940000161438	ENSGT01030000234597.b.a.b	ENSGT00990000203811	ENSGT01030000234623.a.a.b.b	ENSGT00940000157218.B	ENSGT00950000183053.A.a.a	ENSGT00990000203824	ENSGT01030000234623.a.a.b.a	ENSGT00940000157218.A	ENSGT00950000183053.A.a.b	ENSGT00940000157582.g #21	ENSGT00940000155543 #22	ENSGT00940000157669.a.b	ENSGT00940000157034	ENSGT00940000165028.a	ENSGT00940000156585.c.a	ENSGT00390000013174	ENSGT00940000155194.v.b	ENSGT00950000183172.B	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b
Otomorpha	ANCESTRAL SPECIES	109	ENSGT00940000164873	ENSGT00940000164800	ENSGT00410000025596.a.b.a #26	ENSGT00940000157151.c	ENSGT00940000161438	ENSGT01030000234597.b.a.b	ENSGT00990000203811	ENSGT01030000234623.a.a.b.b	ENSGT00940000157218.B	ENSGT00950000183053.A.a.a	ENSGT00990000203824	ENSGT01030000234623.a.a.b.a	ENSGT00940000157218.A	ENSGT00950000183053.A.a.b	ENSGT00940000157582.g #21	ENSGT00940000155543 #22	ENSGT00940000157669.b	ENSGT00940000157034	ENSGT00940000165028.a	ENSGT00940000156585.c.a	ENSGT00390000013174	ENSGT00940000155194.v.b	ENSGT00950000183172.B	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B
Clupeiformes	ANCESTRAL SPECIES		ENSGT00530000063624.C.b	ENSGT00910000144179.b.b.o.a	ENSGT00390000002144 #25	ENSGT00940000164873	ENSGT00940000164800	ENSGT00410000025596.a.b.a #26	ENSGT00940000157151.c	ENSGT01060000248784	ENSGT00940000161438	ENSGT01030000234597.b.a.b	ENSGT00990000203811	ENSGT01030000234623.a.a.b.a	ENSGT00940000157218.A	ENSGT00950000183053.A.a.b	ENSGT00940000157582.g #21	ENSGT00940000155543 #22	ENSGT00940000157669.b	ENSGT00940000157034	ENSGT00940000165028.a	ENSGT00940000156585.c.a	ENSGT00390000013174	ENSGT00940000155194.v.b	ENSGT00940000166269.h	ENSGT00950000183172.B	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B
Denticle herring	MODERN SPECIES	15	ENSDCDG00000024591	ENSDCDG00000024590 #26	ptprub (ENSDCDG00000018591)	ENSDCDG00000018417	ENSDCDG00000018415	ENSDCDG00000018413	ENSDCDG00000018409	paqr7b (ENSDCDG00000018405)	stmn1b (ENSDCDG00000018399)	ENSDCDG00000018394	ENSDCDG00000018391	SERINC2 (ENSDCDG00000018295)	HIVEP3 (ENSDCDG00000018268)	ENSDCDG00000018264	phactr4b (ENSDCDG00000018248) #21	rcc1 (ENSDCDG00000018128) #22	oprd1b (ENSDCDG00000018122)	tcea3 (ENSDCDG00000018104)	tent5ba (ENSDCDG00000018094)	zdhhc18a (ENSDCDG00000018092)	pigv (ENSDCDG00000018090)	ARID1A (ENSDCDG00000018078)	ENSDCDG00000018028	gpn2 (ENSDCDG00000018019)	gpatch3 (ENSDCDG00000018012)	nr0b2a (ENSDCDG00000018005)	ENSDCDG00000018002	tpbgl (ENSDCDG00000017999)	tmem222a (ENSDCDG00000017994)	wdtc1 (ENSDCDG00000017925)	TRNAU1AP (ENSDCDG00000017920) #23
Atlantic herring	MODERN SPECIES	2	ctps1b (ENSCHAG00000005767)	taf12 (ENSCHAG00000006739) #25	rab42b (ENSCHAG00000006793)	ENSCHAG00000006803	ENSCHAG00000006833 #26	ptprub (ENSCHAG00000006963)	ENSCHAG00000010732	ENSCHAG00000010748	paqr7b (ENSCHAG00000010766)	stmn1b (ENSCHAG00000010777)	ENSCHAG00000010834	SERINC2 (ENSCHAG00000010853)	HIVEP3 (ENSCHAG00000011055)	ENSCHAG00000011097	phactr4b (ENSCHAG00000011111) #21	rcc1 (ENSCHAG00000011153) #22	oprd1b (ENSCHAG00000011370)	tcea3 (ENSCHAG00000011394)	tent5ba (ENSCHAG00000011459)	zdhhc18a (ENSCHAG00000011480)	pigv (ENSCHAG00000011617)	ARID1A (ENSCHAG00000011660)	ENSCHAG00000013222	gpn2 (ENSCHAG00000013470)	gpatch3 (ENSCHAG00000013497)	nr0b2a (ENSCHAG00000013503)	KDF1 (ENSCHAG00000013512)	tpbgl (ENSCHAG00000013521)	tmem222a (ENSCHAG00000013528)	wdtc1 (ENSCHAG00000013568)	fut7 (ENSCHAG00000013598)
Otophysi	ANCESTRAL SPECIES	56	ENSGT00940000159398	ENSGT00940000157999	ENSGT00530000063624.C.b	ENSGT00910000144179.b.b.o.a	ENSGT00390000002144 #25	ENSGT00940000164873	ENSGT00940000164800	ENSGT00940000157151.c	ENSGT00940000161438	ENSGT01030000234597.b.a.b.c.b	ENSGT00990000203824	ENSGT01030000234623.a.a.b.a	ENSGT00940000157218.A	ENSGT00950000183053.A.a.b	ENSGT00940000157582.g #21	ENSGT00940000155543 #22	ENSGT00940000157669.b	ENSGT00940000157034	ENSGT00940000165028.a	ENSGT00940000156585.c.a	ENSGT00390000013174	ENSGT00940000155194.v.b	ENSGT00950000183172.B	ENSGT00940000156553	ENSGT00390000003012	ENSGT00810000125524	ENSGT00940000158871	ENSGT00950000183028.a.b.a	ENSGT00390000005813	ENSGT00940000165372	ENSGT00950000183031.A.a.a
Characiphysae	ANCESTRAL SPECIES		ENSGT00530000063624.C.b	ENSGT00910000144179.b.b.o.a	ENSGT00390000002144 #25	ENSGT00940000164873	ENSGT00940000164800	ENSGT00410000025596.a.b.a #26	ENSGT00940000178073	ENSGT00940000157151.c	ENSGT00940000161438	ENSGT01030000234597.b.a.b.c.b	ENSGT00990000203824	ENSGT01030000234623.a.a.b.a	ENSGT00940000157218.A	ENSGT00950000183053.A.a.b	ENSGT00940000157582.g #21	ENSGT00940000155543 #22	ENSGT00940000157669.b	ENSGT00940000157034	ENSGT00940000165028.a	ENSGT00940000156585.c.a	ENSGT00390000013174	ENSGT00940000155194.v.b	ENSGT00950000183172.B	ENSGT00940000156553	ENSGT00390000003012	ENSGT00810000125524	ENSGT00940000158871	ENSGT00950000183028.a.b.a	ENSGT00390000005813	ENSGT00940000165372	ENSGT00390000001960
Characiphysae_b	ANCESTRAL SPECIES	2	ENSGT00530000063624.C.b	ENSGT00910000144179.b.b.o.a	ENSGT00390000002144 #25	ENSGT00940000164873	ENSGT00940000164800	ENSGT00410000025596.a.b.a #26	ENSGT00940000178073	ENSGT00940000157151.c	ENSGT00940000161438	ENSGT01030000234597.b.a.b.c.b	ENSGT00990000203824	ENSGT01030000234623.a.a.b.a	ENSGT00940000157218.A	ENSGT00950000183053.A.a.b	ENSGT00940000157582.g #21	ENSGT00940000155543 #22	ENSGT00940000157669.b	ENSGT00940000157034	ENSGT00940000165028.a	ENSGT00940000156585.c.a	ENSGT00390000013174	ENSGT00940000155194.v.b	ENSGT00950000183172.B	ENSGT00940000156553	ENSGT00390000003012	ENSGT00810000125524	ENSGT00940000158871	ENSGT00950000183028.a.b.a	ENSGT00390000005813	ENSGT00940000165372	ENSGT00950000183031.A.a.a
Characoidei	ANCESTRAL SPECIES	211								ENSGT00940000157151.c	ENSGT00940000161438	ENSGT01030000234597.b.a.b.c.b	ENSGT00990000203824	ENSGT01030000234623.a.a.b.a	ENSGT00940000157218.A	ENSGT00950000183053.A.a.b	ENSGT00940000157582.g #21	ENSGT00940000155543 #22	ENSGT00940000157669.b	ENSGT00940000157034	ENSGT00940000165028.a	ENSGT00940000156585.c.a	ENSGT00390000013174	ENSGT00940000155194.v.b	ENSGT00950000183172.B	ENSGT00940000156553	ENSGT00390000003012	ENSGT00810000125524	ENSGT00940000158871	ENSGT00950000183028.a.b.a	ENSGT00390000005813	ENSGT00940000165372
Red-bellied piranha	MODERN SPECIES	553									paqr7b (ENSPNAG00000022491)	ENSPNAG00000022482	ENSPNAG00000022442	SERINC2 (ENSPNAG00000022429)	HIVEP3 (ENSPNAG00000022386)	ENSPNAG00000022363	phactr4b (ENSPNAG00000022329) #21	rcc1 (ENSPNAG00000022262) #22	oprd1b (ENSPNAG00000022243)	tcea3 (ENSPNAG00000022199)	tent5ba (ENSPNAG00000022093)	zdhhc18a (ENSPNAG00000022080)
Mexicana tetra	MODERN SPECIES	1	ccka (ENSAMXG00000031205)	TRAK1 (ENSAMXG00000029426)	ULK4 (ENSAMXG00000000187)	ctnnb1 (ENSAMXG00000000198)	cmtm8b (ENSAMXG00000033498)	ANGPT1 (ENSAMXG00000033492)	ENSAMXG00000041160	ptprub (ENSAMXG00000001986)	paqr7b (ENSAMXG00000029577)	ENSAMXG00000031197	ENSAMXG00000037938	SERINC2 (ENSAMXG00000020127)	HIVEP3 (ENSAMXG00000040597)	ENSAMXG00000039451	phactr4b (ENSAMXG00000020166) #21	rcc1 (ENSAMXG00000020184) #22	oprd1b (ENSAMXG00000029726)	tcea3 (ENSAMXG00000020206)	tent5ba (ENSAMXG00000037518)	zdhhc18a (ENSAMXG00000041476)	pigv (ENSAMXG00000020228)	ARID1A (ENSAMXG00000020237)	ENSAMXG00000043641	gpn2 (ENSAMXG00000043600)	SNIP1 (ENSAMXG00000035134)	DNALI1 (ENSAMXG00000043503)	gnl2 (ENSAMXG00000020288)	rspo1 (ENSAMXG00000042190)	ENSAMXG00000030403	FHL3 (ENSAMXG00000042221)	utp11 (ENSAMXG00000039671)
Electric eel	MODERN SPECIES	52	ENSEEEG00000006709	ENSEEEG00000006710	cited4b (ENSEEEG00000006711)	ctps1b (ENSEEEG00000006717)	taf12 (ENSEEEG00000006728) #25	rab42b (ENSEEEG00000006729)	ENSEEEG00000006731	ptprub (ENSEEEG00000006734)	paqr7b (ENSEEEG00000006743)	ENSEEEG00000006744	ENSEEEG00000006746	SERINC2 (ENSEEEG00000006747)	HIVEP3 (ENSEEEG00000006754)	ENSEEEG00000006757	phactr4b (ENSEEEG00000006761) #21	rcc1 (ENSEEEG00000006762) #22	oprd1b (ENSEEEG00000006763)	tcea3 (ENSEEEG00000006769)	tent5ba (ENSEEEG00000006776)	zdhhc18a (ENSEEEG00000006786)	pigv (ENSEEEG00000006850)	ARID1A (ENSEEEG00000006855)	gpn2 (ENSEEEG00000006860)	SNIP1 (ENSEEEG00000006862)	dnali1 (ENSEEEG00000006863)	gnl2 (ENSEEEG00000006870)	rspo1 (ENSEEEG00000007397)	FHL3 (ENSEEEG00000007398)	utp11 (ENSEEEG00000007399)	pou3f1 (ENSEEEG00000007400)	rragca (ENSEEEG00000007401)
Channel catfish	MODERN SPECIES		CITED3 (ENSIPUG00000015725)	ctps1b (ENSIPUG00000015748)	taf12 (ENSIPUG00000015799) #25	RAB39B (ENSIPUG00000015874)	ENSIPUG00000015908	ptpru (ENSIPUG00000015960)	ENSIPUG00000016175	ENSIPUG00000016209	paqr7b (ENSIPUG00000016214)	stmn1 (ENSIPUG00000016225)	ENSIPUG00000016239	Serinc1 (ENSIPUG00000016253)	HIVEP3 (ENSIPUG00000016334)	Edn2 (ENSIPUG00000016360)	phactr4 (ENSIPUG00000016453) #21	rcc1 (ENSIPUG00000016552) #22	oprd1 (ENSIPUG00000016639)	tcea3 (ENSIPUG00000016685)	fam46b (ENSIPUG00000016887)	zdhhc18 (ENSIPUG00000016899)	pigv (ENSIPUG00000016911)	arid1a (ENSIPUG00000016930)	gpn2 (ENSIPUG00000016961)	snip1 (ENSIPUG00000016995)	dnali1 (ENSIPUG00000017021)	gnl2 (ENSIPUG00000017079)	rspo1 (ENSIPUG00000017135)	FHL3 (ENSIPUG00000017148)	utp11 (ENSIPUG00000017174)	rragca (ENSIPUG00000017227)	rrp15 (ENSIPUG00000017259)
Cyprinoidei	ANCESTRAL SPECIES	60	ENSGT00530000063624.C.b	ENSGT00910000144179.b.b.o.a	ENSGT00390000002144 #25	ENSGT00940000164873.e	ENSGT00940000164873.f	ENSGT00940000164800	ENSGT00940000157151.c	ENSGT00940000161438	ENSGT01030000234597.b.a.b.c.b	ENSGT01030000234597.b.a.b.c.a	ENSGT00990000203824	ENSGT01030000234623.a.a.b.a	ENSGT00940000157218.A	ENSGT00950000183053.A.a.b	ENSGT00940000157582.g #21	ENSGT00940000155543 #22	ENSGT00940000157669.b	ENSGT00940000157034	ENSGT00940000165028.a	ENSGT00940000156585.c.a	ENSGT00390000013174	ENSGT00940000155194.v.b	ENSGT00950000183172.B	ENSGT00940000156553	ENSGT00390000003012	ENSGT00810000125524	ENSGT00940000158871	ENSGT00950000183028.a.b.a.h	ENSGT00390000005813	ENSGT00940000165372	ENSGT00950000183031.A.a.a
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	28	ENSGT00530000063624.C.b.h	ENSGT00910000144179.b.b.o.a.d	ENSGT00390000002144.fb.a #25	ENSGT00940000164873.e.a	ENSGT00390000002144.gb #25	ENSGT00940000164873.f	ENSGT00940000164800.c	ENSGT00940000157151.c.b	ENSGT00940000161438.c	ENSGT01030000234597.b.a.b.c.b	ENSGT00990000203824.b	ENSGT01030000234623.a.a.b.a.e	ENSGT00940000157218.A.b	ENSGT00950000183053.A.a.b.d	ENSGT00940000157582.g.a #21	ENSGT00940000155543.o #22	ENSGT00940000157669.b.d.b	ENSGT00940000157034.m	ENSGT00940000165028.a.a	ENSGT00940000156585.c.a.a	ENSGT00390000013174.a	ENSGT00940000155194.v.b.a	ENSGT00950000183172.B.a	ENSGT00940000156553.a	ENSGT00390000003012.c	ENSGT00810000125524.a	ENSGT00940000158871.a	ENSGT00950000183028.a.b.a.h.a	ENSGT00390000005813.k	ENSGT00940000165372.b	ENSGT00950000183031.A.a.a.rd.b
Cyprininae_a	ANCESTRAL SPECIES	7	ENSGT00530000063624.C.b.h	ENSGT00910000144179.b.b.o.a.d	ENSGT00390000002144.fb.a #25	ENSGT00940000164873.e.a	ENSGT00390000002144.gb #25	ENSGT00940000164873.f	ENSGT00940000164800.c	ENSGT00940000157151.c.b	ENSGT00940000161438.c	ENSGT01030000234597.b.a.b.c.b	ENSGT00990000203824.b	ENSGT01030000234623.a.a.b.a.e	ENSGT00940000157218.A.b	ENSGT00950000183053.A.a.b.d	ENSGT00940000157582.g.a #21	ENSGT00940000155543.o #22	ENSGT00940000157669.b.d.b	ENSGT00940000157034.m	ENSGT00940000165028.a.a	ENSGT00940000156585.c.a.a	ENSGT00390000013174.a	ENSGT00940000155194.v.b.a	ENSGT00950000183172.B.a	ENSGT00940000156553.a	ENSGT00390000003012.c	ENSGT00810000125524.a	ENSGT00940000158871.a	ENSGT00950000183028.a.b.a.h.a	ENSGT00390000005813.k	ENSGT00940000165372.b	ENSGT00950000183031.A.a.a.rd.b
Common carp reference	MODERN SPECIES	47	ENSCCRG00000006980	cited4b (ENSCCRG00000065553)	ctps1b (ENSCCRG00000006972)	rab42b (ENSCCRG00000073740)	taf12 (ENSCCRG00000058395) #25	si:dkey-34d22.2 (ENSCCRG00000046399)	ENSCCRG00000002646	ptprub (ENSCCRG00000031387)	paqr7b (ENSCCRG00000081087)	ENSCCRG00000057025	ENSCCRG00000076374	ENSCCRG00000046953	ENSCCRG00000061507	ENSCCRG00000012340	phactr4b (ENSCCRG00000012968) #21	rcc1 (ENSCCRG00000012128) #22	oprd1b (ENSCCRG00000056966)	tcea3 (ENSCCRG00000069320)	tent5ba (ENSCCRG00000054851)	zdhhc18a (ENSCCRG00000034419)	ENSCCRG00000074355	dnali1 (ENSCCRG00000013886)	gpn2 (ENSCCRG00000013893)	SNIP1 (ENSCCRG00000013892)	gnl2 (ENSCCRG00000013881)	rspo1 (ENSCCRG00000067043)	FHL3 (ENSCCRG00000057777)	utp11 (ENSCCRG00000002782)	pou3f1 (ENSCCRG00000082268)	rragca (ENSCCRG00000060374)	GJA9 (ENSCCRG00000006776)
Golden-line barbel	MODERN SPECIES	95								paqr7b (ENSSGRG00000039843)	ENSSGRG00000039846	ENSSGRG00000039866	SERINC2 (ENSSGRG00000039871)	HIVEP3 (ENSSGRG00000039998)	ENSSGRG00000040001	ENSSGRG00000040003	phactr4b (ENSSGRG00000040007) #21	rcc1 (ENSSGRG00000040039) #22	oprd1b (ENSSGRG00000040514)	ENSSGRG00000040516	tent5ba (ENSSGRG00000040518)	pigv (ENSSGRG00000040520)	ARID1A (ENSSGRG00000040522)	gpn2 (ENSSGRG00000040548)	snip1 (ENSSGRG00000040560)	gnl2 (ENSSGRG00000040573)	dnali1 (ENSSGRG00000040749)	rspo1 (ENSSGRG00000040750)	FHL3 (ENSSGRG00000040751)	utp11 (ENSSGRG00000040752)	pou3f1 (ENSSGRG00000040758)	rragca (ENSSGRG00000040763)	GJA9 (ENSSGRG00000040807)
Goldfish	MODERN SPECIES	7	glipr2l (ENSCARG00000002459)	TMEM67 (ENSCARG00000002324)	rbm12ba (ENSCARG00000002300)	ENSCARG00000002292	tex10 (ENSCARG00000002213)	erp44 (ENSCARG00000002081)	stx17 (ENSCARG00000002041) ##7	nr4a3 (ENSCARG00000001995)	paqr7b (ENSCARG00000027976)	ENSCARG00000027854	ENSCARG00000027846	SERINC2 (ENSCARG00000027835)	HIVEP3 (ENSCARG00000027815)	ENSCARG00000027808	phactr4b (ENSCARG00000027715) #21	rcc1 (ENSCARG00000027515) #22	oprd1b (ENSCARG00000027484)	tcea3 (ENSCARG00000027357)	tent5ba (ENSCARG00000027326)	zdhhc18a (ENSCARG00000027291)	pigv (ENSCARG00000027268)	ARID1A (ENSCARG00000027137)	gpn2 (ENSCARG00000027119)	SNIP1 (ENSCARG00000027105)	dnali1 (ENSCARG00000027075)	gnl2 (ENSCARG00000024950)	ENSCARG00000024883	rhbg (ENSCARG00000024719)	bcan (ENSCARG00000024684)	isg20l2 (ENSCARG00000024677)	mettl25b (ENSCARG00000024652)
Cyprininae	ANCESTRAL SPECIES	99	ENSGT00940000159398.f	ENSGT00940000157999.`b	ENSGT00530000063624.C.b.g	ENSGT00910000144179.b.b.o.a.c	ENSGT00390000002144.fb.b #25	ENSGT00940000164873.e.b	ENSGT00940000164800.d	ENSGT00940000157151.c.a	ENSGT00940000161438.d	ENSGT01030000234597.b.a.b.c.a	ENSGT00990000203824.a	ENSGT01030000234623.a.a.b.a.f	ENSGT00940000157218.A.a	ENSGT00950000183053.A.a.b.c	ENSGT00940000157582.g.b #21	ENSGT00940000155543.p #22	ENSGT00940000157669.b.d.a	ENSGT00940000157034.n	ENSGT00940000165028.a.b	ENSGT00940000156585.c.a.b	ENSGT00390000013174.b	ENSGT00940000155194.v.b.b	ENSGT00950000183172.B.b	ENSGT00940000155320.x	ENSGT00940000156553.b	ENSGT00390000003012.d	ENSGT00810000125524.b	ENSGT00940000158871.b	ENSGT00950000183028.a.b.a.h.b	ENSGT00390000005813.l	ENSGT00940000165372.a
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	35	preb (ENSCARG00000012787)	lyplal1 (ENSCARG00000012781)	psmd4b (ENSCARG00000012525)	ENSCARG00000012513	grhl2a (ENSCARG00000012244)	ncalda (ENSCARG00000012233)	ENSCARG00000012227	ENSCARG00000012211	tgfb2 (ENSCARG00000012179)	rrp15 (ENSCARG00000012167)	vegfaa (ENSCARG00000012138)	ENSCARG00000012108	ENSCARG00000012070	pip5k1ab (ENSCARG00000011856)	psmd4b (ENSCARG00000011823)	rcc1 (ENSCARG00000011813) #22	DOR (ENSCARG00000011802)	tcea3 (ENSCARG00000011676)	rragca (ENSCARG00000011650)	GJA9 (ENSCARG00000011645)	rhbdl2 (ENSCARG00000011644)	akirin1 (ENSCARG00000011628)	cnr2 (ENSCARG00000011620)	pnrc2 (ENSCARG00000011616)	DOP1A (ENSCARG00000011471)	SNAP91 (ENSCARG00000011387)	prss35 (ENSCARG00000011383)	pnrc2 (ENSCARG00000011375)	ENSCARG00000011363	cnr2 (ENSCARG00000011356)	akirin1 (ENSCARG00000011337)
Goldfish	MODERN SPECIES	35	stt3b (ENSCARG00000032969)	ZHX1 (ENSCARG00000032949)	washc5 (ENSCARG00000032812)	cldn12 (ENSCARG00000032790)	ADAM22 (ENSCARG00000029605)	dbf4 (ENSCARG00000029462)	slc25a40 (ENSCARG00000029404)	rundc3b (ENSCARG00000029352)	paqr7b (ENSCARG00000029348)	ENSCARG00000029308	ENSCARG00000029304	SERINC2 (ENSCARG00000029188)	HIVEP3 (ENSCARG00000029174)	ENSCARG00000029170	phactr4b (ENSCARG00000029136) #21	rcc1 (ENSCARG00000029048) #22	oprd1b (ENSCARG00000029035)	tcea3 (ENSCARG00000028868)	tent5ba (ENSCARG00000028837)	ENSCARG00000028833	zdhhc18a (ENSCARG00000028822)	pigv (ENSCARG00000028804)	ARID1A (ENSCARG00000028624)	SNIP1 (ENSCARG00000028599)	dnali1 (ENSCARG00000028576)	rspo1 (ENSCARG00000028561)	FHL3 (ENSCARG00000028549)	utp11 (ENSCARG00000028537)	pou3f1 (ENSCARG00000028532)	rragca (ENSCARG00000028527)	GJA9 (ENSCARG00000028523)
Cyprininae_a	ANCESTRAL SPECIES	165									ENSGT00940000161438.d	ENSGT01030000234597.b.a.b.c.a	ENSGT00990000203824.a	ENSGT01030000234623.a.a.b.a.f	ENSGT00940000157218.A.a	ENSGT00950000183053.A.a.b.c	ENSGT00940000157582.g.b #21	ENSGT00940000155543.p #22	ENSGT00940000157669.b.d.a	ENSGT00940000157034.n	ENSGT00940000165028.a.b	ENSGT00940000156585.c.a.b	ENSGT00940000155194.v.b.b	ENSGT00950000183172.B.b	ENSGT00940000155320.x.a.a	ENSGT00390000003012.d	ENSGT00810000125524.b	ENSGT00940000158871.b	ENSGT00950000183028.a.b.a.h.b	ENSGT00390000005813.l	ENSGT00950000183031.A.a.a.rd.a	ENSGT01090000260070.C.a.a	ENSGT00940000159442.a
Common carp reference	MODERN SPECIES	2	ENSCCRG00000007359	ENSCCRG00000080902	cited4b (ENSCCRG00000077681)	ENSCCRG00000054658	ctps1b (ENSCCRG00000053678)	rab42b (ENSCCRG00000006957)	ENSCCRG00000031270	ptprub (ENSCCRG00000011143)	paqr7b (ENSCCRG00000067636)	stmn1b (ENSCCRG00000010471)	ENSCCRG00000065016	ENSCCRG00000012366	ENSCCRG00000012346	ENSCCRG00000005202	phactr4b (ENSCCRG00000012094) #21	rcc1 (ENSCCRG00000012081) #22	oprd1b (ENSCCRG00000054570)	tcea3 (ENSCCRG00000012019)	tent5ba (ENSCCRG00000012099)	zdhhc18a (ENSCCRG00000065806)	ENSCCRG00000066990	gpn2 (ENSCCRG00000011983)	dnali1 (ENSCCRG00000011962)	snip1 (ENSCCRG00000011976)	gnl2 (ENSCCRG00000063584)	rspo1 (ENSCCRG00000074801)	FHL3 (ENSCCRG00000053038)	utp11 (ENSCCRG00000002867)	rragca (ENSCCRG00000006769)	GJA9 (ENSCCRG00000057023)	rhbdl2 (ENSCCRG00000006781)
Golden-line barbel	MODERN SPECIES	227									paqr7b (ENSSGRG00000001901)	stmn1b (ENSSGRG00000001906)	ENSSGRG00000001935	SERINC2 (ENSSGRG00000001947)	ENSSGRG00000002183	ENSSGRG00000002190	phactr4b (ENSSGRG00000002194) #21	rcc1 (ENSSGRG00000002201) #22	oprd1b (ENSSGRG00000002316)	tcea3 (ENSSGRG00000002317)	tent5ba (ENSSGRG00000002320)	ARID1A (ENSSGRG00000002323)	gpn2 (ENSSGRG00000003184)	snip1 (ENSSGRG00000003194)	dnali1 (ENSSGRG00000003197)	gnl2 (ENSSGRG00000003346)	rspo1 (ENSSGRG00000005606)	FHL3 (ENSSGRG00000005608)	pou3f1 (ENSSGRG00000005610)	ENSSGRG00000005613	GJA9 (ENSSGRG00000005615)	rhbdl2 (ENSSGRG00000005616)	akirin1 (ENSSGRG00000005619)
Zebrafish	MODERN SPECIES	7	cited4b (ENSDARG00000101009)	ctps1b (ENSDARG00000098386)	taf12 (ENSDARG00000104030) #25	rab42b (ENSDARG00000101170)	ENSDARG00000104865	ENSDARG00000101352	si:dkey-34d22.2 (ENSDARG00000100379)	ENSDARG00000103181	ptprub (ENSDARG00000101081)	stmn1b (ENSDARG00000033655)	paqr7b (ENSDARG00000034907)	ENSDARG00000095152	SERINC2 (ENSDARG00000053425)	ENSDARG00000037154	phactr4b (ENSDARG00000032221) #21	rcc1 (ENSDARG00000037158) #22	oprd1b (ENSDARG00000037159)	tcea3 (ENSDARG00000004724)	tent5ba (ENSDARG00000039943)	zdhhc18a (ENSDARG00000069807)	pigv (ENSDARG00000101952)	ARID1A (ENSDARG00000101710)	gpn2 (ENSDARG00000103127)	snip1 (ENSDARG00000087528)	dnali1 (ENSDARG00000069815)	gnl2 (ENSDARG00000098080)	rspo1 (ENSDARG00000104340)	FHL3 (ENSDARG00000034643)	utp11 (ENSDARG00000039958)	pou3f1 (ENSDARG00000009823)	rragca (ENSDARG00000069829)
Euteleosteomorpha	ANCESTRAL SPECIES	185		ENSGT00940000164873	ENSGT00390000002144 #25	ENSGT00940000164800	ENSGT00410000025596.a.b.a #26	ENSGT00940000178073	ENSGT00940000157151.c	ENSGT00940000161438	ENSGT01030000234597.b.a.b	ENSGT00990000203811	ENSGT00990000203824	ENSGT01030000234623.a.a.b.a	ENSGT00940000157218.A	ENSGT00950000183053.A.a.b	ENSGT00940000157582.g #21	ENSGT00940000155543 #22	ENSGT00940000157669.a.b	ENSGT00940000157034	ENSGT00940000165028.a	ENSGT00940000156585.c.a	ENSGT00390000013174	ENSGT00940000155194.v.b	ENSGT00950000183172.B	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b
Acanthomorphata	ANCESTRAL SPECIES	31	ENSGT01030000234576.D.a.a.b.a.a.a.b	ENSGT01100000263533.b.a.b	ENSGT01100000263505.b.b.a.a.a.b.f	ENSGT00940000166158.a.b	ENSGT00940000162287.B.b	ENSGT00940000154446.b.b.b	ENSGT00940000164800	ENSGT00410000025596.a.b.a #26	ENSGT00940000178073	ENSGT00940000157151.c	ENSGT00940000161438	ENSGT01030000234623.a.a.b.a	ENSGT00940000157218.A	ENSGT00950000183053.A.a.b	ENSGT00940000157582.g #21	ENSGT00940000155543 #22	ENSGT00940000157669.a.b	ENSGT00940000157034	ENSGT00940000165028.a	ENSGT00940000156585.c.a	ENSGT00390000013174	ENSGT00940000155194.v.b	ENSGT00950000183172.B	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b
Euacanthomorphacea	ANCESTRAL SPECIES		ENSGT01100000263533.b.a.b	ENSGT01100000263505.b.b.a.a.a.b.f	ENSGT00940000166158.a.b	ENSGT00940000162287.B.b	ENSGT00940000154446.b.b.b	ENSGT00940000164800	ENSGT00410000025596.a.b.a #26	ENSGT00940000178073	ENSGT00940000157151.c	ENSGT00940000161438	ENSGT01030000234597.b.a.a	ENSGT01030000234623.a.a.b.a	ENSGT00940000157218.A	ENSGT00950000183053.A.a.b	ENSGT00940000157582.g #21	ENSGT00940000155543 #22	ENSGT00940000157669.a.b	ENSGT00940000157034	ENSGT00940000165028.a	ENSGT00940000156585.c.a	ENSGT00390000013174	ENSGT00940000155194.v.b	ENSGT00950000183172.B	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b
Percomorphaceae	ANCESTRAL SPECIES		ENSGT01100000263533.b.a.b	ENSGT01100000263505.b.b.a.a.a.b.f	ENSGT00940000166158.a.b	ENSGT00940000162287.B.b	ENSGT00940000154446.b.b.b	ENSGT00940000164800	ENSGT00410000025596.a.b.a #26	ENSGT00940000178073	ENSGT00940000157151.c	ENSGT00940000161438	ENSGT01030000234597.b.a.a	ENSGT01030000234623.a.a.b.a	ENSGT00940000157218.A	ENSGT00950000183053.A.a.b	ENSGT00940000157582.g #21	ENSGT00940000155543 #22	ENSGT00940000157669.a.b	ENSGT00940000157034	ENSGT00940000165028.a	ENSGT00940000156585.c.a	ENSGT00390000013174	ENSGT00940000155194.v.b	ENSGT00950000183172.B	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b
Tiger tail seahorse	MODERN SPECIES	347	ENSHCOG00000006881	ENSHCOG00000006863	ENSHCOG00000006854	ENSHCOG00000006837	ENSHCOG00000006816	ENSHCOG00000006809	ENSHCOG00000006804	ENSHCOG00000006793	ptprub (ENSHCOG00000006747)	paqr7b (ENSHCOG00000006678)	ENSHCOG00000006674	SERINC2 (ENSHCOG00000006667)	HIVEP3 (ENSHCOG00000006632)	ENSHCOG00000006601	phactr4b (ENSHCOG00000006576) #21	rcc1 (ENSHCOG00000006534) #22	oprd1b (ENSHCOG00000006474)	tcea3 (ENSHCOG00000005864)	tent5ba (ENSHCOG00000005840)	zdhhc18a (ENSHCOG00000005820)	pigv (ENSHCOG00000005775)	ARID1A (ENSHCOG00000005766)	gpn2 (ENSHCOG00000005756)	gpatch3 (ENSHCOG00000005739)	nr0b2a (ENSHCOG00000005733)	ENSHCOG00000005726	tpbgl (ENSHCOG00000005717)	tmem222a (ENSHCOG00000005706)	wdtc1 (ENSHCOG00000005698)	CEP85 (ENSHCOG00000005656)	ENSHCOG00000005643
Percomorphaceae_B	ANCESTRAL SPECIES	1	ENSGT00990000203884	ENSGT01030000234576.D.a.a.b.a.a.a.b	ENSGT00940000155965.b	ENSGT00940000162287.B.b	ENSGT00940000154446.b.b.b	ENSGT00940000164800	ENSGT00410000025596.a.b.a #26	ENSGT00940000178073	ENSGT00940000157151.c	ENSGT00940000161438	ENSGT01030000234597.b.a.a	ENSGT01030000234623.a.a.b.a	ENSGT00940000157218.A	ENSGT00950000183053.A.a.b	ENSGT00940000157582.g #21	ENSGT00940000155543 #22	ENSGT00940000157669.a.b	ENSGT00940000157034	ENSGT00940000165028.a	ENSGT00940000156585.c.a	ENSGT00390000013174	ENSGT00940000155194.v.b	ENSGT00950000183172.B	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b
Ovalentaria	ANCESTRAL SPECIES	3	ENSGT01100000263533.b.a.b	ENSGT01100000263505.b.b.a.a.a.b.f	ENSGT00940000166158.a.b	ENSGT00940000162287.B.b	ENSGT00940000154446.b.b.b	ENSGT00940000164800	ENSGT00410000025596.a.b.a #26	ENSGT00940000178073	ENSGT00940000157151.c	ENSGT00940000161438	ENSGT01030000234597.b.a.a	ENSGT01030000234623.a.a.b.a	ENSGT00940000157218.A	ENSGT00950000183053.A.a.b	ENSGT00940000157582.g #21	ENSGT00940000155543 #22	ENSGT00940000157669.a.b	ENSGT00940000157034	ENSGT00940000165028.a	ENSGT00940000156585.c.a	ENSGT00390000013174	ENSGT00940000155194.v.b	ENSGT00950000183172.B	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b
Atherinomorphae	ANCESTRAL SPECIES		ENSGT00940000164700.A	ENSGT00940000179005	ENSGT00940000172513	ENSGT00940000166158.a.b	ENSGT00940000162287.B.b	ENSGT00940000154446.b.b.b	ENSGT00940000164800	ENSGT00410000025596.a.b.a #26	ENSGT00940000157151.c	ENSGT00940000161438	ENSGT01030000234597.b.a.a	ENSGT01030000234623.a.a.b.a	ENSGT00940000157218.A	ENSGT00950000183053.A.a.b	ENSGT00940000157582.g #21	ENSGT00940000155543 #22	ENSGT00940000157669.a.b	ENSGT00940000157034	ENSGT00940000165028.a	ENSGT00940000156585.c.a	ENSGT00390000013174	ENSGT00940000155194.v.b	ENSGT00950000183172.B	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b
Cyprinodontiformes	ANCESTRAL SPECIES		ENSGT01100000263533.b.b.b.a.a.b	ENSGT00940000164700.A	ENSGT00940000166443.d.a.b	ENSGT00940000166158.a.b	ENSGT00940000162287.B.b	ENSGT00940000154446.b.b.b	ENSGT00940000164800	ENSGT00410000025596.a.b.a #26	ENSGT00940000157151.c	ENSGT00940000161438	ENSGT01030000234597.b.a.a	ENSGT01030000234623.a.a.b.a	ENSGT00940000157218.A	ENSGT00950000183053.A.a.b	ENSGT00940000157582.g #21	ENSGT00940000155543 #22	ENSGT00940000157669.a.b	ENSGT00940000157034	ENSGT00940000165028.a	ENSGT00940000156585.c.a	ENSGT00390000013174	ENSGT00940000155194.v.b	ENSGT00950000183172.B	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b
Aplocheiloidei	ANCESTRAL SPECIES	83	ENSGT01050000244883.A.a.a.b	ENSGT00990000203884	ENSGT00990000203729	ENSGT01030000234576.D.a.a.b.a.a.a.b	ENSGT00940000166443.d.a.b	ENSGT00940000166158.a.b	ENSGT00940000154446.b.b.b	ENSGT00940000164800	ENSGT00940000157151.c	ENSGT00940000161438	ENSGT01030000234597.b.a.a	ENSGT01030000234623.a.a.b.a	ENSGT00940000157218.A	ENSGT00950000183053.A.a.b	ENSGT00940000157582.g #21	ENSGT00940000155543 #22	ENSGT00940000157669.a.b	ENSGT00940000157034	ENSGT00940000165028.a	ENSGT00940000156585.c.a	ENSGT00390000013174	ENSGT00940000155194.v.b	ENSGT00950000183172.B	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b
Mangrove rivulus	MODERN SPECIES	192	ENSKMAG00000014102	zgc:66448 (ENSKMAG00000014091)	ENSKMAG00000014077	ENSKMAG00000014068	ENSKMAG00000014046	ENSKMAG00000014028	si:ch211-79k12.2 (ENSKMAG00000014002)	ENSKMAG00000013953	ptprub (ENSKMAG00000013675)	paqr7b (ENSKMAG00000013587)	ENSKMAG00000013574	SERINC2 (ENSKMAG00000013532)	HIVEP3 (ENSKMAG00000013460)	ENSKMAG00000013420	phactr4b (ENSKMAG00000013351) #21	rcc1 (ENSKMAG00000013320) #22	oprd1b (ENSKMAG00000013296)	tcea3 (ENSKMAG00000013234)	tent5ba (ENSKMAG00000013207)	ENSKMAG00000013172
Turquoise killifish	MODERN SPECIES	1487																rcc1 (ENSNFUG00015015296) #22
Cyprinodontoidei	ANCESTRAL SPECIES		ENSGT01050000244883.A.a.a.b	ENSGT00990000203729	ENSGT00940000166443.d.a.b	ENSGT00940000166158.a.b	ENSGT00940000162287.B.b	ENSGT00940000154446.b.b.b	ENSGT00940000164800	ENSGT00410000025596.a.b.a #26	ENSGT00940000157151.c	ENSGT00940000161438	ENSGT01030000234597.b.a.a	ENSGT01030000234623.a.a.b.a	ENSGT00940000157218.A	ENSGT00950000183053.A.a.b	ENSGT00940000157582.g #21	ENSGT00940000155543 #22	ENSGT00940000157669.a.b	ENSGT00940000157034	ENSGT00940000165028.a	ENSGT00940000156585.c.a	ENSGT00390000013174	ENSGT00940000155194.v.b	ENSGT00950000183172.B	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b
Poeciliinae	ANCESTRAL SPECIES	22	ENSGT01050000244883.A.a.a.b	ENSGT00990000203729	ENSGT00940000166443.d.a.b	ENSGT00940000166158.a.b	ENSGT00940000167469	ENSGT00940000154446.b.b.b	ENSGT00940000164800	ENSGT00410000025596.a.b.a #26	ENSGT00940000157151.c	ENSGT00940000161438	ENSGT01030000234597.b.a.a	ENSGT01030000234623.a.a.b.a	ENSGT00940000157218.A	ENSGT00950000183053.A.a.b	ENSGT00940000157582.g #21	ENSGT00940000155543 #22	ENSGT00940000157669.a.b	ENSGT00940000157034	ENSGT00940000165028.a	ENSGT00940000156585.c.a	ENSGT00390000013174	ENSGT00940000155194.v.b	ENSGT00950000183172.B	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b
Poecilia	ANCESTRAL SPECIES		ENSGT01050000244883.A.a.a.b	ENSGT00990000203729	ENSGT01100000263533.b.a.b	ENSGT00940000166443.d.a.b	ENSGT00940000166158.a.b	ENSGT00940000161979.B.o.cb.e	ENSGT00940000154446.b.b.b	ENSGT00940000164800	ENSGT00940000157151.c	ENSGT00940000161438	ENSGT01030000234597.b.a.a	ENSGT01030000234623.a.a.b.a	ENSGT00940000157218.A	ENSGT00950000183053.A.a.b	ENSGT00940000157582.g #21	ENSGT00940000155543 #22	ENSGT00940000157669.a.b	ENSGT00940000157034	ENSGT00940000165028.a	ENSGT00940000156585.c.a	ENSGT00390000013174	ENSGT00940000155194.v.b	ENSGT00950000183172.B	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b
NAME_6	ANCESTRAL SPECIES	33	ENSGT01050000244883.A.a.a.b	ENSGT00990000203884	ENSGT00940000154411	ENSGT00940000166443.d.a.b	ENSGT00940000166158.a.b	ENSGT00940000161979.B.o.cb.e	ENSGT00940000154446.b.b.b	ENSGT00940000164800	ENSGT00940000157151.c	ENSGT00940000161438	ENSGT01030000234597.b.a.a	ENSGT01030000234623.a.a.b.a	ENSGT00940000157218.A	ENSGT00950000183053.A.a.b	ENSGT00940000157582.g #21	ENSGT00940000155543 #22	ENSGT00940000157669.a.b	ENSGT00940000157034	ENSGT00940000165028.a	ENSGT00940000156585.c.a	ENSGT00390000013174	ENSGT00940000155194.v.b	ENSGT00950000183172.B	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b
Amazon molly	MODERN SPECIES	356	ENSPFOG00000020699	ENSPFOG00000007633	ENSPFOG00000023446	prss1 (ENSPFOG00000007640)	ENSPFOG00000007697	ENSPFOG00000007708	ENSPFOG00000024288	ENSPFOG00000007899	ptprub (ENSPFOG00000008006)	paqr7b (ENSPFOG00000020700)	ENSPFOG00000009026	SERINC2 (ENSPFOG00000009056)	HIVEP3 (ENSPFOG00000009215)	ENSPFOG00000009279	phactr4b (ENSPFOG00000009292) #21	rcc1 (ENSPFOG00000009381) #22	oprd1b (ENSPFOG00000009504)	tcea3 (ENSPFOG00000009554)	tent5ba (ENSPFOG00000009565)	zdhhc18a (ENSPFOG00000009592)	zdhhc18a (ENSPFOG00000009674)	pigv (ENSPFOG00000009699)	ARID1A (ENSPFOG00000009717)	gpn2 (ENSPFOG00000009873)	gpatch3 (ENSPFOG00000009928)	nr0b2a (ENSPFOG00000009983)	ENSPFOG00000009998	tpbgl (ENSPFOG00000010019)	tmem222a (ENSPFOG00000024525)	wdtc1 (ENSPFOG00000010064)	CEP85 (ENSPFOG00000010149)
Sailfin molly	MODERN SPECIES	812										paqr7b (ENSPLAG00000000258)	ENSPLAG00000011510	SERINC2 (ENSPLAG00000011484)	HIVEP3 (ENSPLAG00000000253)	ENSPLAG00000011409	phactr4b (ENSPLAG00000011393) #21	rcc1 (ENSPLAG00000011374) #22	oprd1b (ENSPLAG00000011324)	tcea3 (ENSPLAG00000011292)
Guppy	MODERN SPECIES	446	ENSPREG00000005538	prss1 (ENSPREG00000005883)	ENSPREG00000007869	ENSPREG00000007890	ENSPREG00000007907	ENSPREG00000007939	si:ch211-79k12.2 (ENSPREG00000007963)	ENSPREG00000007989	ptprub (ENSPREG00000008054)	paqr7b (ENSPREG00000008256)	ENSPREG00000008263	SERINC2 (ENSPREG00000008278)	HIVEP3 (ENSPREG00000008296)	ENSPREG00000008322	phactr4b (ENSPREG00000008357) #21	rcc1 (ENSPREG00000008415) #22	oprd1b (ENSPREG00000008437)	tcea3 (ENSPREG00000008483)	tent5ba (ENSPREG00000008620)	zdhhc18a (ENSPREG00000008633)	pigv (ENSPREG00000008663)	ARID1A (ENSPREG00000008684)	gpn2 (ENSPREG00000008794)	gpatch3 (ENSPREG00000008873)	nr0b2a (ENSPREG00000008891)	ENSPREG00000008900	tpbgl (ENSPREG00000008925)	tmem222a (ENSPREG00000008949)	wdtc1 (ENSPREG00000008983)	CEP85 (ENSPREG00000009036)	ENSPREG00000009137
Platyfish	MODERN SPECIES	17	epn1a (ENSXMAG00000011911)	sbk3 (ENSXMAG00000011908)	mfap5 (ENSXMAG00000022392)	ENSXMAG00000011893	ENSXMAG00000025004	aicda (ENSXMAG00000011889)	nat14 (ENSXMAG00000011888)	ENSXMAG00000011876	ENSXMAG00000011873	rasip1 (ENSXMAG00000011857)	cox6b2 (ENSXMAG00000025485)	ENSXMAG00000011810	ENSXMAG00000010646	ENSXMAG00000010648	phactr4b (ENSXMAG00000010649) #21	rcc1 (ENSXMAG00000010657) #22	oprd1b (ENSXMAG00000015741)	tcea3 (ENSXMAG00000010685)	tent5ba (ENSXMAG00000010694)	zdhhc18a (ENSXMAG00000028647)	pigv (ENSXMAG00000010711)	ARID1A (ENSXMAG00000010716)	gpn2 (ENSXMAG00000010742)	gpatch3 (ENSXMAG00000010749)	nr0b2a (ENSXMAG00000010556)	ENSXMAG00000023100	tpbgl (ENSXMAG00000019082)	tmem222a (ENSXMAG00000028549)	wdtc1 (ENSXMAG00000010763)	CEP85 (ENSXMAG00000010776)	ENSXMAG00000023555
NAME_4	ANCESTRAL SPECIES	86	ENSGT00990000203884	ENSGT01030000234576.D.a.a.b.a.a.a.b	ENSGT01100000263505.b.b.a.a.a.b.f.k	ENSGT00940000166158.a.b	ENSGT00940000162287.B.b	ENSGT00940000154446.b.b.b	ENSGT00940000164800	ENSGT00410000025596.a.b.a #26	ENSGT00940000157151.c	ENSGT00940000161438	ENSGT01030000234597.b.a.a	ENSGT01030000234623.a.a.b.a	ENSGT00940000157218.A	ENSGT00950000183053.A.a.b	ENSGT00940000157582.g #21	ENSGT00940000155543 #22	ENSGT00940000157669.a.b	ENSGT00940000157034	ENSGT00940000165028.a	ENSGT00940000156585.c.a	ENSGT00390000013174	ENSGT00940000155194.v.b	ENSGT00950000183172.B	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b
Mummichog	MODERN SPECIES	482														ENSFHEG00000016838	phactr4b (ENSFHEG00000016831) #21	rcc1 (ENSFHEG00000016809) #22	oprd1b (ENSFHEG00000016732)	tcea3 (ENSFHEG00000015602)	tent5ba (ENSFHEG00000015561)	zdhhc18a (ENSFHEG00000015541)	pigv (ENSFHEG00000015501)	ARID1A (ENSFHEG00000015486)	gpn2 (ENSFHEG00000015292)	gpatch3 (ENSFHEG00000015264)	nr0b2a (ENSFHEG00000015222)	KDF1 (ENSFHEG00000015211)	ENSFHEG00000015203	tmem222a (ENSFHEG00000000826)	wdtc1 (ENSFHEG00000015111)	CEP85 (ENSFHEG00000014993)	ENSFHEG00000014977
Sheepshead minnow	MODERN SPECIES	333											ENSCVAG00000020472	SERINC2 (ENSCVAG00000020458)	ENSCVAG00000020431	ENSCVAG00000020375	phactr4b (ENSCVAG00000020350) #21	rcc1 (ENSCVAG00000020283) #22	oprd1b (ENSCVAG00000020248)	tcea3 (ENSCVAG00000020222)	tent5ba (ENSCVAG00000020190)	zdhhc18a (ENSCVAG00000020173)	pigv (ENSCVAG00000020161)	ARID1A (ENSCVAG00000020151)	gpn2 (ENSCVAG00000020134)	gpatch3 (ENSCVAG00000000827)	nr0b2a (ENSCVAG00000020110)	KDF1 (ENSCVAG00000020102)	tpbgl (ENSCVAG00000020093)	tmem222a (ENSCVAG00000020041)	wdtc1 (ENSCVAG00000020036)	CEP85 (ENSCVAG00000019986)	ENSCVAG00000019975
Oryzias	ANCESTRAL SPECIES	2	ENSGT00940000164700.A	ENSGT00940000179005	ENSGT00940000172513	ENSGT00940000166158.a.b	ENSGT00940000168692.f	ENSGT00940000154446.b.b.b	ENSGT00940000164800	ENSGT00410000025596.a.b.a #26	ENSGT00940000157151.c	ENSGT00940000161438	ENSGT01030000234597.b.a.a	ENSGT01030000234623.a.a.b.a	ENSGT00940000157218.A	ENSGT00950000183053.A.a.b	ENSGT00940000157582.g #21	ENSGT00940000155543 #22	ENSGT00940000157669.a.b	ENSGT00940000157034	ENSGT00940000165028.a	ENSGT00940000156585.c.a	ENSGT00390000013174	ENSGT00940000155194.v.b	ENSGT00950000183172.B	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b
Oryzias_b	ANCESTRAL SPECIES	1	ENSGT00940000164700.A	ENSGT00940000179005	ENSGT00940000172513	ENSGT00940000166158.a.b	ENSGT00940000162287.B.b	ENSGT00940000154446.b.b.b	ENSGT00940000164800	ENSGT00410000025596.a.b.a #26	ENSGT00940000157151.c	ENSGT00940000161438	ENSGT01030000234597.b.a.a	ENSGT01030000234623.a.a.b.a	ENSGT00940000157218.A	ENSGT00950000183053.A.a.b	ENSGT00940000157582.g #21	ENSGT00940000155543 #22	ENSGT00940000157669.a.b	ENSGT00940000157034	ENSGT00940000165028.a	ENSGT00940000156585.c.a	ENSGT00390000013174	ENSGT00940000155194.v.b	ENSGT00950000183172.B	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b
Javanese ricefish	MODERN SPECIES	7	ENSOJAG00000011960	ENSOJAG00000011988	ENSOJAG00000011993	si:ch211-79k12.2 (ENSOJAG00000012001)	ENSOJAG00000012016	ENSOJAG00000012031 #26	ptprub (ENSOJAG00000012437)	ENSOJAG00000017575	paqr7b (ENSOJAG00000017587)	ENSOJAG00000017593	SERINC2 (ENSOJAG00000017629)	ENSOJAG00000017677	ENSOJAG00000017691	ENSOJAG00000017705 #21	ENSOJAG00000017733 #21	rcc1 (ENSOJAG00000017774) #22	oprd1b (ENSOJAG00000017898)	ENSOJAG00000018118	tent5ba (ENSOJAG00000018129)	zdhhc18a (ENSOJAG00000018158)	pigv (ENSOJAG00000018177)	gpn2 (ENSOJAG00000018270)	gpatch3 (ENSOJAG00000018279)	nr0b2a (ENSOJAG00000018286)	ENSOJAG00000018298	tpbgl (ENSOJAG00000018305)	tmem222a (ENSOJAG00000018312)	wdtc1 (ENSOJAG00000018357)	CEP85 (ENSOJAG00000018845)	ENSOJAG00000018856	ENSOJAG00000018868
Indian medaka	MODERN SPECIES	5	ENSOMEG00000009978	ENSOMEG00000009987	taf2 (ENSOMEG00000010038)	enpp2 (ENSOMEG00000010105)	NOD1 (ENSOMEG00000010177)	ENSOMEG00000010206	ENSOMEG00000010227	ENSOMEG00000010262	ABHD5 (ENSOMEG00000010319)	ENSOMEG00000010342	ENSOMEG00000010361	SERINC2 (ENSOMEG00000010404)	HIVEP3 (ENSOMEG00000010472)	ENSOMEG00000010505	phactr4b (ENSOMEG00000010621) #21	rcc1 (ENSOMEG00000010687) #22	oprd1b (ENSOMEG00000010711)	tcea3 (ENSOMEG00000010764)	tent5ba (ENSOMEG00000010794)	zdhhc18a (ENSOMEG00000010825)	pigv (ENSOMEG00000010858)	ARID1A (ENSOMEG00000010910)	gpn2 (ENSOMEG00000010953)	gpatch3 (ENSOMEG00000010991)	nr0b2a (ENSOMEG00000011004)	ENSOMEG00000011011	tpbgl (ENSOMEG00000011052)	tmem222a (ENSOMEG00000011094)	wdtc1 (ENSOMEG00000011235)	ENSOMEG00000011310	CEP85 (ENSOMEG00000011339)
Oryzias_a	ANCESTRAL SPECIES	38	ENSGT00940000155965.b	ENSGT00940000166443.d.a.b	ENSGT00940000166158.a.b	ENSGT00940000168692.f	ENSGT00940000154446.b.b.b	ENSGT00940000164800	ENSGT00940000157334	ENSGT00410000025596.a.b.a #26	ENSGT00940000157151.c	ENSGT00940000161438	ENSGT01030000234597.b.a.a	ENSGT01030000234623.a.a.b.a	ENSGT00940000157218.A	ENSGT00950000183053.A.a.b	ENSGT00940000157582.g #21	ENSGT00940000155543 #22
Japanese Medaka HdrR	MODERN SPECIES	7	ENSORLG00000020756	ENSORLG00000029834 #26	ptprub (ENSORLG00000020763)	ENSORLG00000023269	ENSORLG00000029245	ENSORLG00000025668	ENSORLG00000023999	paqr7b (ENSORLG00000023167)	ENSORLG00000022259	ENSORLG00000019865	ENSORLG00000026643	ENSORLG00000023762	ENSORLG00000023910	ENSORLG00000023606	phactr4b (ENSORLG00000026028) #21	rcc1 (ENSORLG00000019932) #22
Ovalentaria_B	ANCESTRAL SPECIES	1	ENSGT01100000263533.b.a.b	ENSGT01100000263505.b.b.a.a.a.b.f	ENSGT00940000166158.a.b	ENSGT00940000162287.B.b	ENSGT00940000154446.b.b.b	ENSGT00940000164800	ENSGT00410000025596.a.b.a #26	ENSGT00940000178073	ENSGT00940000157151.c	ENSGT00940000161438	ENSGT01030000234597.b.a.a	ENSGT01030000234623.a.a.b.a	ENSGT00940000157218.A	ENSGT00950000183053.A.a.b	ENSGT00940000157582.g #21	ENSGT00940000155543 #22	ENSGT00940000157669.a.b	ENSGT00940000157034	ENSGT00940000165028.a	ENSGT00940000156585.c.a	ENSGT00390000013174	ENSGT00940000155194.v.b	ENSGT00950000183172.B	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b
Cichlidae	ANCESTRAL SPECIES	26	ENSGT01100000263533.b.a.b	ENSGT01100000263505.b.b.a.a.a.b.f	ENSGT00940000166158.a.b	ENSGT00940000162287.B.b	ENSGT00940000154446.b.b.b	ENSGT00940000164800	ENSGT00410000025596.a.b.a #26	ENSGT00940000178073	ENSGT00940000157151.c	ENSGT00940000161438	ENSGT01030000234597.b.a.a	ENSGT01030000234623.a.a.b.a	ENSGT00940000157218.A	ENSGT00950000183053.A.a.b	ENSGT00940000157582.g #21	ENSGT00940000155543 #22	ENSGT00940000157669.a.b	ENSGT00940000157034	ENSGT00940000165028.a	ENSGT00940000156585.c.a	ENSGT00390000013174	ENSGT00940000155194.v.b	ENSGT00950000183172.B	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b
Pseudocrenilabrinae	ANCESTRAL SPECIES	2	ENSGT01100000263533.b.a.b	ENSGT01100000263505.b.b.a.a.a.b.f	ENSGT00940000166158.a.b	ENSGT00940000162287.B.b	ENSGT00940000154446.b.b.b	ENSGT00940000164800	ENSGT00410000025596.a.b.a #26	ENSGT00940000178073	ENSGT00940000157151.c	ENSGT00940000161438	ENSGT01030000234597.b.a.a	ENSGT01030000234623.a.a.b.a	ENSGT00940000157218.A	ENSGT00950000183053.A.a.b	ENSGT00940000157582.g #21	ENSGT00940000155543 #22	ENSGT00940000157669.a.b	ENSGT00940000157034	ENSGT00940000165028.a	ENSGT00940000156585.c.a	ENSGT00390000013174	ENSGT00940000155194.v.b	ENSGT00950000183172.B	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	1	ENSGT01100000263533.b.a.b	ENSGT01100000263505.b.b.a.a.a.b.f	ENSGT00940000166158.a.b	ENSGT00940000162287.B.b	ENSGT00940000154446.b.b.b	ENSGT00940000164800	ENSGT00410000025596.a.b.a #26	ENSGT00940000178073	ENSGT00940000157151.c	ENSGT00940000161438	ENSGT01030000234597.b.a.a	ENSGT01030000234623.a.a.b.a	ENSGT00940000157218.A	ENSGT00950000183053.A.a.b	ENSGT00940000157582.g #21	ENSGT00940000155543 #22	ENSGT00940000157669.a.b	ENSGT00940000157034	ENSGT00940000165028.a	ENSGT00940000156585.c.a	ENSGT00390000013174	ENSGT00940000155194.v.b	ENSGT00950000183172.B	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b
Haplochromini	ANCESTRAL SPECIES	24	ENSGT00940000166158.a.b.d	ENSGT00940000168692.d	ENSGT00940000166158.a.b.c	ENSGT00940000162287.B.b	ENSGT00940000154446.b.b.b	ENSGT00940000164800	ENSGT00410000025596.a.b.a #26	ENSGT00940000178073	ENSGT00940000157151.c	ENSGT00940000161438	ENSGT01030000234597.b.a.a	ENSGT01030000234623.a.a.b.a	ENSGT00940000157218.A	ENSGT00950000183053.A.a.b	ENSGT00940000157582.g #21	ENSGT00940000155543 #22	ENSGT00940000157669.a.b	ENSGT00940000157034	ENSGT00940000165028.a	ENSGT00940000156585.c.a	ENSGT00390000013174	ENSGT00940000155194.v.b	ENSGT00950000183172.B	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b
Haplochromini_A	ANCESTRAL SPECIES	30	ENSGT01100000263505.b.b.a.a.a.b.f	ENSGT00940000166158.a.b.d	ENSGT00940000166158.a.b.c	ENSGT00940000162287.B.b	ENSGT00940000154446.b.b.b	ENSGT00940000164800	ENSGT00410000025596.a.b.a #26	ENSGT00940000178073	ENSGT00940000157151.c	ENSGT00940000161438	ENSGT01030000234597.b.a.a	ENSGT01030000234623.a.a.b.a	ENSGT00940000157218.A	ENSGT00950000183053.A.a.b	ENSGT00940000157582.g #21	ENSGT00940000155543 #22	ENSGT00940000157669.a.b	ENSGT00940000157034	ENSGT00940000165028.a	ENSGT00940000156585.c.a	ENSGT00390000013174	ENSGT00940000155194.v.b	ENSGT00950000183172.B	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b
Haplochromini_B	ANCESTRAL SPECIES	50	ENSGT00940000166158.a.b.d	ENSGT00940000166158.a.b.c	ENSGT00940000166443.d.a.a.b	ENSGT00940000154446.b.b.b	ENSGT00940000164800	ENSGT00410000025596.a.b.a #26	ENSGT00940000178073	ENSGT00940000157151.c	ENSGT01100000263728	ENSGT00940000161438	ENSGT01030000234597.b.a.a	ENSGT01030000234623.a.a.b.a	ENSGT00940000157218.A	ENSGT00950000183053.A.a.b	ENSGT00940000157582.g #21	ENSGT00940000155543 #22	ENSGT00940000157669.a.b	ENSGT00940000157034	ENSGT00940000165028.a	ENSGT00940000156585.c.a	ENSGT00390000013174	ENSGT00940000155194.v.b	ENSGT00950000183172.B	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g.c	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b
Zebra mbuna	MODERN SPECIES	34									ENSMZEG00005015567	paqr7b (ENSMZEG00005015574)	ENSMZEG00005015584	SERINC2 (ENSMZEG00005015595)	HIVEP3 (ENSMZEG00005015625)	ENSMZEG00005015671	phactr4b (ENSMZEG00005015719) #21	rcc1 (ENSMZEG00005015755) #22	oprd1b (ENSMZEG00005015794)	tcea3 (ENSMZEG00005019706)	tent5ba (ENSMZEG00005019712)	zdhhc18a (ENSMZEG00005019713)	pigv (ENSMZEG00005019715)	ARID1A (ENSMZEG00005019720)	gpn2 (ENSMZEG00005019726)	gpatch3 (ENSMZEG00005019731)	nr0b2a (ENSMZEG00005019734)	ENSMZEG00005019737	tpbgl (ENSMZEG00005019744)	tmem222a (ENSMZEG00005019760)	wdtc1 (ENSMZEG00005019772)	CEP85 (ENSMZEG00005019788)	ENSMZEG00005019797
Eastern happy	MODERN SPECIES	2	ENSACLG00000011883	ENSACLG00000011926	ENSACLG00000011945	ENSACLG00000011975	si:ch211-79k12.2 (ENSACLG00000012024)	ENSACLG00000012000	ENSACLG00000012037 #26	ptprub (ENSACLG00000012055)	ENSACLG00000012320	paqr7b (ENSACLG00000012326)	ENSACLG00000012336	SERINC2 (ENSACLG00000012381)	HIVEP3 (ENSACLG00000012413)	ENSACLG00000012469	phactr4b (ENSACLG00000012517) #21	rcc1 (ENSACLG00000012547) #22	oprd1b (ENSACLG00000012582)	tcea3 (ENSACLG00000012597)	tent5ba (ENSACLG00000012695)	zdhhc18a (ENSACLG00000012707)	pigv (ENSACLG00000012733)	ARID1A (ENSACLG00000012755)	gpn2 (ENSACLG00000012793)	gpatch3 (ENSACLG00000012807)	nr0b2a (ENSACLG00000012820)	ENSACLG00000012826	tpbgl (ENSACLG00000012831)	tmem222a (ENSACLG00000012836)	wdtc1 (ENSACLG00000012911)	CEP85 (ENSACLG00000012930)	ENSACLG00000012962
P. nyererei	MODERN SPECIES	439	ENSPNYG00000005821	ENSPNYG00000005794	ENSPNYG00000005754	ENSPNYG00000005742	ENSPNYG00000005710	ENSPNYG00000005700	si:ch211-79k12.2 (ENSPNYG00000005696)	ENSPNYG00000005689	ptprub (ENSPNYG00000005615)	paqr7b (ENSPNYG00000005589)	ENSPNYG00000005560	SERINC2 (ENSPNYG00000005524)	HIVEP3 (ENSPNYG00000005489)	ENSPNYG00000005420	phactr4b (ENSPNYG00000005377) #21	rcc1 (ENSPNYG00000005348) #22	oprd1b (ENSPNYG00000005325)	tcea3 (ENSPNYG00000005286)	ENSPNYG00000005272	tent5ba (ENSPNYG00000005263)	zdhhc18a (ENSPNYG00000005233)	pigv (ENSPNYG00000005224)	ARID1A (ENSPNYG00000005199)	gpn2 (ENSPNYG00000005186)	gpatch3 (ENSPNYG00000005172)	nr0b2a (ENSPNYG00000005164)	tpbgl (ENSPNYG00000005135)	tmem222a (ENSPNYG00000005103)	wdtc1 (ENSPNYG00000005049)	CEP85 (ENSPNYG00000005034)	ENSPNYG00000005002
Burton s mouthbrooder	MODERN SPECIES	713										paqr7b (ENSHBUG00000021050)	ENSHBUG00000021044	SERINC2 (ENSHBUG00000021024)	HIVEP3 (ENSHBUG00000020969)	ENSHBUG00000020903	phactr4b (ENSHBUG00000020877) #21	rcc1 (ENSHBUG00000020825) #22	oprd1b (ENSHBUG00000020777)	tcea3 (ENSHBUG00000020748)	tent5ba (ENSHBUG00000020683)	zdhhc18a (ENSHBUG00000020668)	pigv (ENSHBUG00000020655)	ARID1A (ENSHBUG00000020639)	gpn2 (ENSHBUG00000020524)	gpatch3 (ENSHBUG00000020513)	nr0b2a (ENSHBUG00000020485)	tpbgl (ENSHBUG00000020479)	tmem222a (ENSHBUG00000020475)	wdtc1 (ENSHBUG00000020447)	CEP85 (ENSHBUG00000020409)	ENSHBUG00000020387	ENSHBUG00000020309
Lyretail cichlid	MODERN SPECIES	331	prss1 (ENSNBRG00000001805)	ENSNBRG00000001787	zgc:66448 (ENSNBRG00000001730)	ENSNBRG00000001704	ENSNBRG00000001685	ENSNBRG00000001678	ENSNBRG00000001641	ENSNBRG00000001576	ptprub (ENSNBRG00000001476)	paqr7b (ENSNBRG00000001406)	ENSNBRG00000001384	SERINC2 (ENSNBRG00000001341)	HIVEP3 (ENSNBRG00000001299)	ENSNBRG00000001250	phactr4b (ENSNBRG00000001134) #21	rcc1 (ENSNBRG00000001101) #22	oprd1b (ENSNBRG00000000698)	ENSNBRG00000000663	tcea3 (ENSNBRG00000000553)	tent5ba (ENSNBRG00000000536)	zdhhc18a (ENSNBRG00000000503)	pigv (ENSNBRG00000000491)	ARID1A (ENSNBRG00000000408)	gpn2 (ENSNBRG00000000384)	gpatch3 (ENSNBRG00000000365)	nr0b2a (ENSNBRG00000022432)	ENSNBRG00000022395	tpbgl (ENSNBRG00000022364)	tmem222a (ENSNBRG00000022351)	wdtc1 (ENSNBRG00000022328)	CEP85 (ENSNBRG00000022276)
Nile tilapia	MODERN SPECIES	2	ENSONIG00000041727	ENSONIG00000031438	ENSONIG00000027412	ENSONIG00000040486	ENSONIG00000032133	si:ch211-79k12.2 (ENSONIG00000035951)	ENSONIG00000006710	ptprub (ENSONIG00000006711)	ENSONIG00000032449	paqr7b (ENSONIG00000006730)	ENSONIG00000007590	SERINC2 (ENSONIG00000006735)	HIVEP3 (ENSONIG00000006743)	ENSONIG00000006746	phactr4b (ENSONIG00000006749) #21	rcc1 (ENSONIG00000006750) #22	ENSONIG00000037358	oprd1 (ENSONIG00000038781)	tcea3 (ENSONIG00000006755)	tent5b (ENSONIG00000043099)	zdhhc18a (ENSONIG00000006761)	pigv (ENSONIG00000006763)	ARID1A (ENSONIG00000006764)	gpn2 (ENSONIG00000006769)	gpatch3 (ENSONIG00000006771)	nr0b2 (ENSONIG00000031748)	ENSONIG00000006773	tpbgl (ENSONIG00000006775)	tmem222a (ENSONIG00000006776)	wdtc1 (ENSONIG00000006780)	CEP85 (ENSONIG00000006789)
Midas cichlid	MODERN SPECIES	1099	ENSACIG00000001671	ENSACIG00000001637	ENSACIG00000001626	ENSACIG00000001593	si:ch211-79k12.2 (ENSACIG00000001587)	ENSACIG00000001557	ENSACIG00000001543 #26	ptprub (ENSACIG00000001460)	ENSACIG00000001457	paqr7b (ENSACIG00000001418)	ENSACIG00000001210	SERINC2 (ENSACIG00000001174)	HIVEP3 (ENSACIG00000001091)	ENSACIG00000001076	phactr4b (ENSACIG00000001037) #21	rcc1 (ENSACIG00000001005) #22
Pomacentridae	ANCESTRAL SPECIES	18	ENSGT01030000234576.D.a.a.b.a.a.a.b	ENSGT01100000263533.b.a.b	ENSGT01100000263505.b.b.a.a.a.b.f	ENSGT00940000166158.a.b	ENSGT00940000161979.B.o.cb.e	ENSGT00940000154446.b.b.b	ENSGT00940000164800	ENSGT00410000025596.a.b.a #26	ENSGT00940000157151.c	ENSGT00940000161438	ENSGT01030000234597.b.a.a	ENSGT01030000234623.a.a.b.a	ENSGT00940000157218.A	ENSGT00950000183053.A.a.b	ENSGT00940000157582.g #21	ENSGT00940000155543 #22	ENSGT00940000157669.a.b	ENSGT00940000157034	ENSGT00940000165028.a	ENSGT00940000156585.c.a	ENSGT00390000013174	ENSGT00940000155194.v.b	ENSGT00950000183172.B	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b
Pomacentridae_A	ANCESTRAL SPECIES	5	ENSGT00940000162287.B.b	ENSGT01100000263533.b.a.b	ENSGT01100000263505.b.b.a.a.a.b.f	ENSGT00940000166158.a.b	ENSGT00940000161979.B.o.cb.e	ENSGT00940000154446.b.b.b	ENSGT00940000164800	ENSGT00410000025596.a.b.a #26	ENSGT00940000157151.c	ENSGT00940000161438	ENSGT01030000234597.b.a.a	ENSGT01030000234623.a.a.b.a	ENSGT00940000157218.A	ENSGT00950000183053.A.a.b	ENSGT00940000157582.g #21	ENSGT00940000155543 #22	ENSGT00940000157669.a.b	ENSGT00940000157034	ENSGT00940000165028.a	ENSGT00940000156585.c.a	ENSGT00390000013174	ENSGT00940000155194.v.b	ENSGT00950000183172.B	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b
Amphiprion	ANCESTRAL SPECIES	1	ENSGT01030000234576.D.a.a.b.a.a.a.b	ENSGT01100000263533.b.a.b	ENSGT00940000164700.A	ENSGT01100000263505.b.b.a.a.a.b.f	ENSGT00940000166158.a.b	ENSGT00940000154446.b.b.b	ENSGT00940000164800	ENSGT00410000025596.a.b.a #26	ENSGT00940000157151.c	ENSGT00940000161438	ENSGT01030000234597.b.a.a	ENSGT01030000234623.a.a.b.a	ENSGT00940000157218.A	ENSGT00950000183053.A.a.b	ENSGT00940000157582.g #21	ENSGT00940000155543 #22	ENSGT00940000157669.a.b	ENSGT00940000157034	ENSGT00940000165028.a	ENSGT00940000156585.c.a	ENSGT00390000013174	ENSGT00940000155194.v.b	ENSGT00950000183172.B	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b
Clown anemonefish	MODERN SPECIES	606								COL14A1 (ENSAOCG00000018333)	paqr7b (ENSAOCG00000018342)	ENSAOCG00000018369	SERINC2 (ENSAOCG00000018403)	HIVEP3 (ENSAOCG00000018454)	ENSAOCG00000018468	ENSAOCG00000018487	phactr4b (ENSAOCG00000001332) #21	rcc1 (ENSAOCG00000018616) #22	oprd1b (ENSAOCG00000018631)	tcea3 (ENSAOCG00000018665)	tent5ba (ENSAOCG00000018686)	zdhhc18a (ENSAOCG00000018745)
Orange clownfish	MODERN SPECIES	21	zgc:66448 (ENSAPEG00000018224)	ENSAPEG00000018237	ENSAPEG00000018266	ENSAPEG00000018297	ENSAPEG00000018323	si:ch211-79k12.2 (ENSAPEG00000018345)	ENSAPEG00000018358	ENSAPEG00000018375 #26	ptprub (ENSAPEG00000018403)	paqr7b (ENSAPEG00000018517)	ENSAPEG00000018528	SERINC2 (ENSAPEG00000018542)	HIVEP3 (ENSAPEG00000018570)	ENSAPEG00000018583	phactr4b (ENSAPEG00000018616) #21	rcc1 (ENSAPEG00000018662) #22	oprd1b (ENSAPEG00000018674)	tcea3 (ENSAPEG00000018704)	ENSAPEG00000018717	tent5ba (ENSAPEG00000018735)	zdhhc18a (ENSAPEG00000018753)	pigv (ENSAPEG00000018791)	ARID1A (ENSAPEG00000018815)	gpn2 (ENSAPEG00000018912)	gpatch3 (ENSAPEG00000018926)	nr0b2a (ENSAPEG00000018934)	KDF1 (ENSAPEG00000018942)	tpbgl (ENSAPEG00000018953)	tmem222a (ENSAPEG00000018960)	wdtc1 (ENSAPEG00000019007)	CEP85 (ENSAPEG00000019107)
Spiny chromis	MODERN SPECIES	157							ptprub (ENSAPOG00000024499)	ENSAPOG00000024503	paqr7b (ENSAPOG00000024506)	ENSAPOG00000024508	SERINC2 (ENSAPOG00000024518)	HIVEP3 (ENSAPOG00000024522)	ENSAPOG00000024528	ENSAPOG00000001178 #21	ENSAPOG00000000003 #21	rcc1 (ENSAPOG00000001181) #22	oprd1b (ENSAPOG00000001182)	tcea3 (ENSAPOG00000001185)	tent5ba (ENSAPOG00000001189)	zdhhc18a (ENSAPOG00000001193)	pigv (ENSAPOG00000001196)	ARID1A (ENSAPOG00000001203)	gpn2 (ENSAPOG00000001208)	gpatch3 (ENSAPOG00000001212)	nr0b2a (ENSAPOG00000001213)	KDF1 (ENSAPOG00000001216)	tpbgl (ENSAPOG00000001220)	tmem222a (ENSAPOG00000001224)	wdtc1 (ENSAPOG00000001239)	CEP85 (ENSAPOG00000001255)	ENSAPOG00000001265
Bicolor damselfish	MODERN SPECIES	778										paqr7b (ENSSPAG00000018095)	ENSSPAG00000018083	SERINC2 (ENSSPAG00000018050)	HIVEP3 (ENSSPAG00000018014)	ENSSPAG00000017983	phactr4b (ENSSPAG00000017941) #21	rcc1 (ENSSPAG00000017923) #22	oprd1b (ENSSPAG00000017034)
Percomorphaceae_C	ANCESTRAL SPECIES	2	ENSGT01030000234576.D.a.a.b.a.a.a.b	ENSGT01100000263533.b.a.b	ENSGT01100000263505.b.b.a.a.a.b.f	ENSGT00940000166158.a.b	ENSGT00940000162287.B.b	ENSGT00940000154446.b.b.b	ENSGT00940000164800	ENSGT00410000025596.a.b.a #26	ENSGT00940000157151.c	ENSGT00940000161438	ENSGT01030000234597.b.a.a	ENSGT01030000234623.a.a.b.a	ENSGT00940000157218.A	ENSGT00950000183053.A.a.b	ENSGT00940000157582.g #21	ENSGT00940000155543 #22	ENSGT00940000157669.a.b	ENSGT00940000157034	ENSGT00940000165028.a	ENSGT00940000156585.c.a	ENSGT00390000013174	ENSGT00940000155194.v.b	ENSGT00950000183172.B	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b
Eupercaria	ANCESTRAL SPECIES	1	ENSGT00940000155965.b	ENSGT00940000166443.d.a.b	ENSGT00940000166158.a.b	ENSGT00940000168692	ENSGT00940000162287.B.b	ENSGT00940000154446.b.b.b	ENSGT00940000164800	ENSGT00410000025596.a.b.a #26	ENSGT00940000157151.c	ENSGT00940000161438	ENSGT01030000234597.b.a.a	ENSGT01030000234623.a.a.b.a	ENSGT00940000157218.A	ENSGT00950000183053.A.a.b	ENSGT00940000157582.g #21	ENSGT00940000155543 #22	ENSGT00940000157669.a.b	ENSGT00940000157034	ENSGT00940000165028.a	ENSGT00940000156585.c.a	ENSGT00390000013174	ENSGT00940000155194.v.b	ENSGT00950000183172.B	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b
Eupecaria_A	ANCESTRAL SPECIES	2	ENSGT01100000263533.b.a.b	ENSGT00980000198710	ENSGT00940000172513	ENSGT00940000166158.a.b	ENSGT00940000162287.B.b	ENSGT00940000154446.b.b.b	ENSGT00940000164800	ENSGT00410000025596.a.b.a #26	ENSGT00940000157151.c	ENSGT00940000161438	ENSGT01030000234597.b.a.a	ENSGT01030000234623.a.a.b.a	ENSGT00940000157218.A	ENSGT00950000183053.A.a.b	ENSGT00940000157582.g #21	ENSGT00940000155543 #22	ENSGT00940000157669.a.b	ENSGT00940000157034	ENSGT00940000165028.a	ENSGT00940000156585.c.a	ENSGT00390000013174	ENSGT00940000155194.v.b	ENSGT00950000183172.B	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b
Ballan wrasse	MODERN SPECIES	320									paqr7b (ENSLBEG00000007761)	ENSLBEG00000007735	SERINC2 (ENSLBEG00000007648)	HIVEP3 (ENSLBEG00000007560)	ENSLBEG00000007528	ENSLBEG00000007514	phactr4b (ENSLBEG00000007429) #21	rcc1 (ENSLBEG00000007389) #22	oprd1b (ENSLBEG00000007370)	tcea3 (ENSLBEG00000007289)	tent5ba (ENSLBEG00000007247)	zdhhc18a (ENSLBEG00000007231)	pigv (ENSLBEG00000007204)	ARID1A (ENSLBEG00000007086)	gpn2 (ENSLBEG00000007059)	gpatch3 (ENSLBEG00000007046)	nr0b2a (ENSLBEG00000007031)	ENSLBEG00000007012	tpbgl (ENSLBEG00000007001)	tmem222a (ENSLBEG00000006974)	wdtc1 (ENSLBEG00000006897)	CEP85 (ENSLBEG00000006860)	ENSLBEG00000006805
Eupecaria_B	ANCESTRAL SPECIES	4	ENSGT00980000198710	ENSGT00940000172513	ENSGT00940000166158.a.b	ENSGT00940000168692	ENSGT00940000162287.B.b	ENSGT00940000154446.b.b.b	ENSGT00940000164800	ENSGT00410000025596.a.b.a #26	ENSGT00940000157151.c	ENSGT00940000161438	ENSGT01030000234597.b.a.a	ENSGT01030000234623.a.a.b.a	ENSGT00940000157218.A	ENSGT00950000183053.A.a.b	ENSGT00940000157582.g #21	ENSGT00940000155543 #22	ENSGT00940000157669.a.b	ENSGT00940000157034	ENSGT00940000165028.a	ENSGT00940000156585.c.a	ENSGT00390000013174	ENSGT00940000155194.v.b	ENSGT00950000183172.B	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b
Perciformes	ANCESTRAL SPECIES	3	ENSGT00940000166443.d.b	ENSGT01100000263533.b.b.b.a.a.b	ENSGT00940000172513	ENSGT00940000166158.a.b	ENSGT00940000168692	ENSGT00940000154446.b.b.b	ENSGT00940000164800	ENSGT00410000025596.a.b.a #26	ENSGT00940000157151.c	ENSGT00940000161438	ENSGT01030000234597.b.a.a	ENSGT01030000234623.a.a.b.a	ENSGT00940000157218.A	ENSGT00950000183053.A.a.b	ENSGT00940000157582.g #21	ENSGT00940000155543 #22	ENSGT00940000157669.a.b	ENSGT00940000157034	ENSGT00940000165028.a	ENSGT00940000156585.c.a	ENSGT00390000013174	ENSGT00940000155194.v.b	ENSGT00950000183172.B	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b
Cottioidei	ANCESTRAL SPECIES	7	ENSGT00940000166443.d.b	ENSGT01050000244883.A.a.a.b.v	ENSGT00990000203884	ENSGT00940000172513	ENSGT00940000166158.a.b	ENSGT00940000154446.b.b.b	ENSGT00940000164800	ENSGT00410000025596.a.b.a #26	ENSGT00940000157151.c	ENSGT00940000161438	ENSGT01030000234597.b.a.a	ENSGT01030000234623.a.a.b.a	ENSGT00940000157218.A	ENSGT00950000183053.A.a.b	ENSGT00940000157582.g #21	ENSGT00940000155543 #22	ENSGT00940000157669.a.b	ENSGT00940000157034	ENSGT00940000165028.a	ENSGT00940000156585.c.a	ENSGT00390000013174	ENSGT00940000155194.v.b	ENSGT00950000183172.B	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b
Lumpfish	MODERN SPECIES	7	ENSCLMG00005010334	ENSCLMG00005010332	ENSCLMG00005010322	ENSCLMG00005010320	si:ch211-79k12.2 (ENSCLMG00005010319)	ENSCLMG00005010318	ENSCLMG00005010315 #26	ptprub (ENSCLMG00005010074)	paqr7b (ENSCLMG00005010061)	ENSCLMG00005010058	SERINC2 (ENSCLMG00005009992)	HIVEP3 (ENSCLMG00005009991)	ENSCLMG00005009990	ENSCLMG00005009989 #21	ENSCLMG00005009988 #21	rcc1 (ENSCLMG00005009843) #22	oprd1b (ENSCLMG00005009835)	tcea3 (ENSCLMG00005009833)	tent5ba (ENSCLMG00005009832)	zdhhc18a (ENSCLMG00005009831)	pigv (ENSCLMG00005009830)	ARID1A (ENSCLMG00005009756)	gpn2 (ENSCLMG00005009752)	gpatch3 (ENSCLMG00005009750)	nr0b2a (ENSCLMG00005009749)	ENSCLMG00005009748	tpbgl (ENSCLMG00005009747)	tmem222a (ENSCLMG00005009686)	wdtc1 (ENSCLMG00005009534)	CEP85 (ENSCLMG00005009527)	ENSCLMG00005009524
Stickleback	MODERN SPECIES	19	prss1 (ENSGACG00000007461)	prss1 (ENSGACG00000007422)	ENSGACG00000007416	ENSGACG00000007414	ENSGACG00000007412	ENSGACG00000007410	ENSGACG00000007407	ENSGACG00000007402	ENSGACG00000007401	ptprub (ENSGACG00000007392)	paqr7b (ENSGACG00000007389)	ENSGACG00000007379	SERINC2 (ENSGACG00000007354)	ENSGACG00000007350	phactr4b (ENSGACG00000007346) #21	rcc1 (ENSGACG00000007316) #22	oprd1b (ENSGACG00000007300)	tcea3 (ENSGACG00000007286)	tent5ba (ENSGACG00000007269)	zdhhc18a (ENSGACG00000007261)	pigv (ENSGACG00000007253)	ARID1A (ENSGACG00000007244)	gpn2 (ENSGACG00000007225)	gpatch3 (ENSGACG00000007199)	nr0b2a (ENSGACG00000007198)	ENSGACG00000007195	ENSGACG00000007194	tpbgl (ENSGACG00000007188)	tmem222a (ENSGACG00000007178)	wdtc1 (ENSGACG00000007170)	CEP85 (ENSGACG00000007163)
Perciformes_a	ANCESTRAL SPECIES	3	ENSGT00990000203884	ENSGT01030000234576.D.a.a.b.a.a.a.b	ENSGT00940000172513	ENSGT00940000166158.a.b	ENSGT00940000168692	ENSGT00940000154446.b.b.b	ENSGT00940000164800	ENSGT00410000025596.a.b.a #26	ENSGT00940000157151.c	ENSGT00940000161438	ENSGT01030000234597.b.a.a	ENSGT01030000234623.a.a.b.a	ENSGT00940000157218.A	ENSGT00950000183053.A.a.b	ENSGT00940000157582.g #21	ENSGT00940000155543 #22	ENSGT00940000157669.a.b	ENSGT00940000157034	ENSGT00940000165028.a	ENSGT00940000156585.c.a	ENSGT00390000013174	ENSGT00940000155194.v.b	ENSGT00950000183172.B	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b
Channel bull blenny	MODERN SPECIES	7	zgc:66448 (ENSCGOG00000016229)	ENSCGOG00000001584	ENSCGOG00000001613	ENSCGOG00000001631	ENSCGOG00000001638	ENSCGOG00000001642	si:ch211-79k12.2 (ENSCGOG00000001670)	ENSCGOG00000001674 #26	ptprub (ENSCGOG00000001893)	paqr7b (ENSCGOG00000007890)	ENSCGOG00000007893	SERINC2 (ENSCGOG00000007909)	HIVEP3 (ENSCGOG00000008600)	ENSCGOG00000008607	phactr4b (ENSCGOG00000008613) #21	rcc1 (ENSCGOG00000008639) #22	oprd1b (ENSCGOG00000008927)	tcea3 (ENSCGOG00000008933)	tent5ba (ENSCGOG00000008957)	zdhhc18a (ENSCGOG00000008961)	pigv (ENSCGOG00000008975)	ARID1A (ENSCGOG00000008977)	gpn2 (ENSCGOG00000009026)	gpatch3 (ENSCGOG00000009043)	nr0b2a (ENSCGOG00000009050)	ENSCGOG00000009056	tpbgl (ENSCGOG00000009060)	tmem222a (ENSCGOG00000009078)	wdtc1 (ENSCGOG00000009093)	CEP85 (ENSCGOG00000009466)	ENSCGOG00000009483
Pike perch	MODERN SPECIES	15	ENSSLUG00000015216	ENSSLUG00000015206	ENSSLUG00000015194	ENSSLUG00000015190	ENSSLUG00000015185	si:ch211-79k12.2 (ENSSLUG00000015179)	ENSSLUG00000015171	ENSSLUG00000015164 #26	ptprub (ENSSLUG00000009534)	paqr7b (ENSSLUG00000009328)	ENSSLUG00000009323	SERINC2 (ENSSLUG00000009306)	HIVEP3 (ENSSLUG00000009300)	ENSSLUG00000009296	phactr4b (ENSSLUG00000009281) #21	rcc1 (ENSSLUG00000009264) #22	oprd1b (ENSSLUG00000009258)	tcea3 (ENSSLUG00000009231)	tent5ba (ENSSLUG00000009216)	zdhhc18a (ENSSLUG00000009209)	pigv (ENSSLUG00000009205)	ARID1A (ENSSLUG00000009196)	gpn2 (ENSSLUG00000009194)	gpatch3 (ENSSLUG00000009185)	nr0b2a (ENSSLUG00000009161)	KDF1 (ENSSLUG00000009138)	tpbgl (ENSSLUG00000009132)	tmem222a (ENSSLUG00000009128)	wdtc1 (ENSSLUG00000009092)	ENSSLUG00000009063	ENSSLUG00000009051
Eupecaria_C	ANCESTRAL SPECIES	2	ENSGT01030000234576.D.a.a.b.a.a.a.b	ENSGT01100000263533.b.a.b	ENSGT00980000198710	ENSGT00940000166158.a.b	ENSGT00940000162287.B.b	ENSGT00940000154446.b.b.b	ENSGT00940000164800	ENSGT00410000025596.a.b.a #26	ENSGT00940000157151.c	ENSGT00940000161438	ENSGT01030000234597.b.a.a	ENSGT01030000234623.a.a.b.a	ENSGT00940000157218.A	ENSGT00950000183053.A.a.b	ENSGT00940000157582.g #21	ENSGT00940000155543 #22	ENSGT00940000157669.a.b	ENSGT00940000157034	ENSGT00940000165028.a	ENSGT00940000156585.c.a	ENSGT00390000013174	ENSGT00940000155194.v.b	ENSGT00950000183172.B	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b
Gilthead seabream	MODERN SPECIES	8	zgc:66448 (ENSSAUG00010021181)	ENSSAUG00010021177	ENSSAUG00010021175	ENSSAUG00010021173	si:ch211-79k12.2 (ENSSAUG00010021172)	ENSSAUG00010021170	ENSSAUG00010021169 #26	ENSSAUG00010021168	ptprub (ENSSAUG00010014804)	paqr7b (ENSSAUG00010014682)	ENSSAUG00010014680	SERINC2 (ENSSAUG00010014637)	HIVEP3 (ENSSAUG00010014624)	ENSSAUG00010014620	phactr4b (ENSSAUG00010014604) #21	rcc1 (ENSSAUG00010014511) #22	oprd1b (ENSSAUG00010014509)	tcea3 (ENSSAUG00010014507)	tent5ba (ENSSAUG00010014506)	zdhhc18a (ENSSAUG00010014502)	pigv (ENSSAUG00010014498)	ARID1A (ENSSAUG00010014457)	gpn2 (ENSSAUG00010014447)	gpatch3 (ENSSAUG00010014445)	nr0b2a (ENSSAUG00010014444)	KDF1 (ENSSAUG00010014441)	tpbgl (ENSSAUG00010014440)	tmem222a (ENSSAUG00010014436)	wdtc1 (ENSSAUG00010014359)	CEP85 (ENSSAUG00010014340)	ENSSAUG00010014337
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	2	ENSGT01100000263533.b.a.b	ENSGT00980000198710	ENSGT00940000166158.a.b	ENSGT00940000168692	ENSGT00940000167469	ENSGT00940000154446.b.b.b	ENSGT00940000164800	ENSGT00410000025596.a.b.a #26	ENSGT00940000157151.c	ENSGT00940000161438	ENSGT01030000234597.b.a.a	ENSGT01030000234623.a.a.b.a	ENSGT00940000157218.A	ENSGT00950000183053.A.a.b	ENSGT00940000157582.g #21	ENSGT00940000155543 #22	ENSGT00940000157669.a.b	ENSGT00940000157034	ENSGT00940000165028.a	ENSGT00940000156585.c.a	ENSGT00390000013174	ENSGT00940000155194.v.b	ENSGT00950000183172.B	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b
European seabass	MODERN SPECIES	6	ENSDLAG00005013388	ENSDLAG00005013423	ENSDLAG00005032706	ENSDLAG00005013451	ENSDLAG00005013459	ENSDLAG00005013495 #26	ptprub (ENSDLAG00005013623)	ENSDLAG00005027528	paqr7b (ENSDLAG00005031734)	ENSDLAG00005034735	ENSDLAG00005032326	ENSDLAG00005030979	ENSDLAG00005017860	ENSDLAG00005017871	phactr4b (ENSDLAG00005017879) #21	rcc1 (ENSDLAG00005017919) #22	oprd1b (ENSDLAG00005017954)	tcea3 (ENSDLAG00005017991)	tent5ba (ENSDLAG00005018132)	zdhhc18a (ENSDLAG00005032044)	pigv (ENSDLAG00005018164)	ARID1A (ENSDLAG00005018183)	gpn2 (ENSDLAG00005018430)	ENSDLAG00005018442	nr0b2a (ENSDLAG00005018436)	tpbgl (ENSDLAG00005018444)	tmem222a (ENSDLAG00005032304)	wdtc1 (ENSDLAG00005004338)	ENSDLAG00005004594	ENSDLAG00005004677	ENSDLAG00005034322
Large yellow croaker	MODERN SPECIES	484	zgc:66448 (ENSLCRG00005010842)	ENSLCRG00005010844	si:ch211-79k12.2 (ENSLCRG00005010846)	ENSLCRG00005010848	ENSLCRG00005010850	ENSLCRG00005010852	ENSLCRG00005010855	ENSLCRG00005010857 #26	ptprub (ENSLCRG00005010925)	paqr7b (ENSLCRG00005017127)	ENSLCRG00005017129	SERINC2 (ENSLCRG00005017134)	HIVEP3 (ENSLCRG00005017216)	ENSLCRG00005017218	phactr4b (ENSLCRG00005017223) #21	rcc1 (ENSLCRG00005017239) #22	oprd1b (ENSLCRG00005017254)	tcea3 (ENSLCRG00005017257)	tent5ba (ENSLCRG00005017260)	zdhhc18a (ENSLCRG00005017262)	pigv (ENSLCRG00005017264)	ARID1A (ENSLCRG00005017266)	gpn2 (ENSLCRG00005017290)	gpatch3 (ENSLCRG00005017294)	nr0b2a (ENSLCRG00005017297)	ENSLCRG00005002912	tpbgl (ENSLCRG00005002945)	tmem222a (ENSLCRG00005002967)	CEP85 (ENSLCRG00005003005)	wdtc1 (ENSLCRG00005003097)	ENSLCRG00005003205
Tetraodontidae	ANCESTRAL SPECIES	14	ENSGT00390000010337.A	ENSGT01050000244883.A.a.b	ENSGT00940000155965.b	ENSGT00940000166443.d.a.b	ENSGT00940000166158.a.b	ENSGT00940000154446.b.b.b	ENSGT00940000164800	ENSGT00410000025596.a.b.a #26	ENSGT00940000157151.c	ENSGT00940000161438	ENSGT01030000234597.b.a.a	ENSGT01030000234623.a.a.b.a	ENSGT00940000157218.A	ENSGT00940000175511	ENSGT00940000157582.g #21	ENSGT00940000155543 #22	ENSGT00940000157669.a.b	ENSGT00940000157034	ENSGT00940000165028.a	ENSGT00940000156585.c.a	ENSGT00390000013174	ENSGT00940000155194.v.b	ENSGT00950000183172.B	ENSGT00390000004191.e	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b
Fugu	MODERN SPECIES	19	ENSTRUG00000023415	ENSTRUG00000030621	ENSTRUG00000028595	ENSTRUG00000023994	ENSTRUG00000024595	ENSTRUG00000032597	ENSTRUG00000014446	ENSTRUG00000020747 #26	ptprub (ENSTRUG00000014224)	paqr7b (ENSTRUG00000014214)	ENSTRUG00000014171	SERINC2 (ENSTRUG00000014033)	HIVEP3 (ENSTRUG00000013983)	ENSTRUG00000021269	phactr4b (ENSTRUG00000013938) #21	rcc1 (ENSTRUG00000013885) #22	oprd1b (ENSTRUG00000013741)	tcea3 (ENSTRUG00000013596)	tent5ba (ENSTRUG00000019516)	zdhhc18a (ENSTRUG00000013521)	pigv (ENSTRUG00000013505)	ARID1A (ENSTRUG00000013351)	gpn2 (ENSTRUG00000013346)	gpatch3 (ENSTRUG00000013294)	nr0b2a (ENSTRUG00000013270)	KDF1 (ENSTRUG00000013266)	ENSTRUG00000013261	tmem222a (ENSTRUG00000013224)	wdtc1 (ENSTRUG00000013148)	CEP85 (ENSTRUG00000013057)	ENSTRUG00000012968
Tetraodon	MODERN SPECIES	23	ENSTNIG00000003486	ENSTNIG00000001559	ENSTNIG00000009676	prss1 (ENSTNIG00000009675)	ENSTNIG00000000528	ENSTNIG00000009674	ENSTNIG00000008153	ENSTNIG00000009672 #26	ptprub (ENSTNIG00000009671)	paqr7b (ENSTNIG00000009670)	ENSTNIG00000009669	SERINC2 (ENSTNIG00000009668)	HIVEP3 (ENSTNIG00000009667)	ENSTNIG00000009666	phactr4b (ENSTNIG00000009665) #21	rcc1 (ENSTNIG00000009664) #22	oprd1b (ENSTNIG00000009663)	tcea3 (ENSTNIG00000009662)	tent5ba (ENSTNIG00000009661)	zdhhc18a (ENSTNIG00000000731)	pigv (ENSTNIG00000009660)	ARID1A (ENSTNIG00000009659)	gpn2 (ENSTNIG00000009658)	gpatch3 (ENSTNIG00000009657)	ENSTNIG00000009656	nr0b2a (ENSTNIG00000009655)	KDF1 (ENSTNIG00000009654)	tpbgl (ENSTNIG00000009653)	tmem222a (ENSTNIG00000009652)	wdtc1 (ENSTNIG00000009651)	ENSTNIG00000001431
Percomorphaceae_D	ANCESTRAL SPECIES	2	ENSGT01030000234576.D.a.a.b.a.a.a.b	ENSGT00940000155965.b	ENSGT00940000166443.d.a.b	ENSGT00940000166158.a.b	ENSGT00940000162287.B.b	ENSGT00940000154446.b.b.b	ENSGT00940000164800	ENSGT00410000025596.a.b.a #26	ENSGT00940000157151.c	ENSGT00940000161438	ENSGT01030000234597.b.a.a	ENSGT01030000234623.a.a.b.a	ENSGT00940000157218.A	ENSGT00950000183053.A.a.b	ENSGT00940000157582.g #21	ENSGT00940000155543 #22	ENSGT00940000157669.a.b	ENSGT00940000157034	ENSGT00940000165028.a	ENSGT00940000156585.c.a	ENSGT00390000013174	ENSGT00940000155194.v.b	ENSGT00950000183172.B	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b
Anabantaria	ANCESTRAL SPECIES	2	ENSGT01030000234576.D.a.a.b.a.a.a.b	ENSGT00940000155965.b	ENSGT00940000166443.d.a.b	ENSGT00940000166158.a.b	ENSGT00940000162287.B.b	ENSGT00940000154446.b.b.b	ENSGT00940000164800	ENSGT00410000025596.a.b.a #26	ENSGT00940000157151.c	ENSGT00940000161438	ENSGT01030000234597.b.a.a	ENSGT01030000234623.a.a.b.a	ENSGT00940000157218.A	ENSGT00950000183053.A.a.b	ENSGT00940000157582.g #21	ENSGT00940000155543 #22	ENSGT00940000157669.a.b	ENSGT00940000157034	ENSGT00940000165028.a	ENSGT00940000156585.c.a	ENSGT00390000013174	ENSGT00940000155194.v.b	ENSGT00950000183172.B	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b
Anabantoidei	ANCESTRAL SPECIES	3	ENSGT01050000244883.A.a.a.b.v	ENSGT00990000203884	ENSGT01030000234576.D.a.a.b.a.a.a.b	ENSGT00940000162367.f	ENSGT00940000166158.a.b	ENSGT00940000154446.b.b.b	ENSGT00940000164800	ENSGT00410000025596.a.b.a #26	ENSGT00940000157151.c	ENSGT00940000161438	ENSGT01030000234597.b.a.a	ENSGT01030000234623.a.a.b.a	ENSGT00940000157218.A	ENSGT00950000183053.A.a.b	ENSGT00940000157582.g #21	ENSGT00940000155543 #22	ENSGT00940000157669.a.b	ENSGT00940000157034	ENSGT00940000165028.a	ENSGT00940000156585.c.a	ENSGT00390000013174	ENSGT00940000155194.v.b	ENSGT00950000183172.B	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b
Climbing perch	MODERN SPECIES	7	ENSATEG00000023577	ENSATEG00000023580	ENSATEG00000028165	ENSATEG00000027175	ENSATEG00000023592 #26	ptprub (ENSATEG00000023612)	ENSATEG00000023647	ENSATEG00000025986	ENSATEG00000029753	paqr7b (ENSATEG00000023650)	ENSATEG00000023651	ENSATEG00000023655	ENSATEG00000023666	ENSATEG00000023675	phactr4b (ENSATEG00000023687) #21	rcc1 (ENSATEG00000023708) #22	oprd1b (ENSATEG00000023714)	tcea3 (ENSATEG00000023720)	tent5ba (ENSATEG00000023735)	zdhhc18a (ENSATEG00000023739)	pigv (ENSATEG00000023748)	gpn2 (ENSATEG00000023756)	ENSATEG00000023759	nr0b2a (ENSATEG00000023764)	ENSATEG00000023767	tpbgl (ENSATEG00000023772)	tmem222a (ENSATEG00000023778)	wdtc1 (ENSATEG00000023785)	ENSATEG00000023798	ENSATEG00000023805	ENSATEG00000023812
Siamese fighting fish	MODERN SPECIES	7	prss1 (ENSBSLG00000017725)	ENSBSLG00000017781	zgc:66448 (ENSBSLG00000017786)	ENSBSLG00000017792	ENSBSLG00000017817	si:ch211-79k12.2 (ENSBSLG00000017830)	ENSBSLG00000017849	ENSBSLG00000017894 #26	ptprub (ENSBSLG00000018053)	paqr7b (ENSBSLG00000020687)	ENSBSLG00000020688	SERINC2 (ENSBSLG00000021041)	HIVEP3 (ENSBSLG00000021237)	ENSBSLG00000021273	phactr4b (ENSBSLG00000021291) #21	rcc1 (ENSBSLG00000021354) #22	oprd1b (ENSBSLG00000021520)	tcea3 (ENSBSLG00000021546)	tent5ba (ENSBSLG00000021583)	zdhhc18a (ENSBSLG00000021708)	pigv (ENSBSLG00000021745)	ARID1A (ENSBSLG00000021801)	gpn2 (ENSBSLG00000022190)	gpatch3 (ENSBSLG00000022200)	nr0b2a (ENSBSLG00000022207)	KDF1 (ENSBSLG00000022210)	tpbgl (ENSBSLG00000022211)	tmem222a (ENSBSLG00000022218)	wdtc1 (ENSBSLG00000022227)	CEP85 (ENSBSLG00000022341)	ENSBSLG00000022408
Zig-zag eel	MODERN SPECIES	7	zgc:66448 (ENSMAMG00000023621)	ENSMAMG00000025190	ENSMAMG00000023625	ENSMAMG00000023628	ENSMAMG00000023631	ENSMAMG00000025672	ENSMAMG00000026593	ENSMAMG00000023638 #26	ptprub (ENSMAMG00000023642)	paqr7b (ENSMAMG00000023649)	ENSMAMG00000023653	ENSMAMG00000027041	ENSMAMG00000023659	ENSMAMG00000026537	phactr4b (ENSMAMG00000023666) #21	rcc1 (ENSMAMG00000023676) #22	oprd1b (ENSMAMG00000023686)	tcea3 (ENSMAMG00000023969)	tent5ba (ENSMAMG00000023970)	zdhhc18a (ENSMAMG00000023971)	pigv (ENSMAMG00000023972)	ARID1A (ENSMAMG00000023973)	gpn2 (ENSMAMG00000023974)	ENSMAMG00000023975	nr0b2a (ENSMAMG00000023976)	ENSMAMG00000023977	tpbgl (ENSMAMG00000023978)	tmem222a (ENSMAMG00000024611)	wdtc1 (ENSMAMG00000023980)	ENSMAMG00000023981	ENSMAMG00000023982
Carangaria	ANCESTRAL SPECIES	1	ENSGT00990000203884	ENSGT01030000234576.D.a.a.b.a.a.a.b	ENSGT00980000198710	ENSGT00940000166158.a.b	ENSGT00940000162287.B.b	ENSGT00940000154446.b.b.b	ENSGT00940000164800	ENSGT00410000025596.a.b.a #26	ENSGT00940000157151.c	ENSGT00940000161438	ENSGT01030000234597.b.a.a	ENSGT01030000234623.a.a.b.a	ENSGT00940000157218.A	ENSGT00950000183053.A.a.b	ENSGT00940000157582.g #21	ENSGT00940000155543 #22	ENSGT00940000157669.a.b	ENSGT00940000157034	ENSGT00940000165028.a	ENSGT00940000156585.c.a	ENSGT00390000013174	ENSGT00940000155194.v.b	ENSGT00950000183172.B	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b
Pleuronectoidei	ANCESTRAL SPECIES	3	ENSGT00980000198710	ENSGT01100000263533.b.a.b	ENSGT01100000263505.b.b.a.a.a.b.f	ENSGT00940000166158.a.b	ENSGT00940000162287.B.b	ENSGT00940000154446.b.b.b	ENSGT00940000164800	ENSGT00410000025596.a.b.a #26	ENSGT00940000157151.c	ENSGT00940000161438	ENSGT01030000234597.b.a.a	ENSGT01030000234623.a.a.b.a	ENSGT00940000157218.A	ENSGT00950000183053.A.a.b	ENSGT00940000157582.g #21	ENSGT00940000155543 #22	ENSGT00940000157669.a.b	ENSGT00940000157034	ENSGT00940000165028.a	ENSGT00940000156585.c.a	ENSGT00390000013174	ENSGT00940000155194.v.b	ENSGT00950000183172.B	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b
Turbot	MODERN SPECIES		prss1 (ENSSMAG00000001272)	ENSSMAG00000032519	ENSSMAG00000001324	ENSSMAG00000001339	ENSSMAG00000001359	ENSSMAG00000001441	ENSSMAG00000001385	ENSSMAG00000021876 #26	ptprub (ENSSMAG00000001484)	paqr7b (ENSSMAG00000001701)	ENSSMAG00000001715	ENSSMAG00000001719	ENSSMAG00000001736	ENSSMAG00000031889	phactr4b (ENSSMAG00000001764) #21	rcc1 (ENSSMAG00000001903) #22	oprd1b (ENSSMAG00000001952)	tcea3 (ENSSMAG00000001986)	tent5ba (ENSSMAG00000002009)	zdhhc18a (ENSSMAG00000002019)	pigv (ENSSMAG00000002024)	ARID1A (ENSSMAG00000002033)	gpn2 (ENSSMAG00000002056)	ENSSMAG00000002067	nr0b2a (ENSSMAG00000002080)	ENSSMAG00000033964	tpbgl (ENSSMAG00000002097)	tmem222a (ENSSMAG00000002110)	wdtc1 (ENSSMAG00000002132)	ENSSMAG00000002177	ENSSMAG00000002239
Tongue sole	MODERN SPECIES	4	ENSCSEG00000005478	ENSCSEG00000005473	ENSCSEG00000005470	ENSCSEG00000005467	ENSCSEG00000005462	si:ch211-79k12.2 (ENSCSEG00000005456)	ENSCSEG00000005447	ENSCSEG00000005441 #26	ptprub (ENSCSEG00000005376)	paqr7b (ENSCSEG00000005364)	ENSCSEG00000005360	SERINC2 (ENSCSEG00000005356)	ENSCSEG00000005348	ENSCSEG00000005342	phactr4b (ENSCSEG00000005337) #21	rcc1 (ENSCSEG00000005334) #22	oprd1b (ENSCSEG00000005330)	tcea3 (ENSCSEG00000005315)	tent5ba (ENSCSEG00000005309)	zdhhc18a (ENSCSEG00000005303)	pigv (ENSCSEG00000005298)	ARID1A (ENSCSEG00000005289)	gpn2 (ENSCSEG00000005283)	gpatch3 (ENSCSEG00000005277)	nr0b2a (ENSCSEG00000005273)	ENSCSEG00000005272	tpbgl (ENSCSEG00000005271)	tmem222a (ENSCSEG00000005261)	wdtc1 (ENSCSEG00000005252)	CEP85 (ENSCSEG00000005242)	ENSCSEG00000005234
Carangaria_A	ANCESTRAL SPECIES	9	ENSGT00990000203884	ENSGT01030000234576.D.a.a.b.a.a.a.b	ENSGT00980000198710	ENSGT00940000166158.a.b	ENSGT00940000162287.B.b	ENSGT00940000154446.b.b.b	ENSGT00940000164800	ENSGT00410000025596.a.b.a #26	ENSGT00940000157151.c	ENSGT00940000161438	ENSGT01030000234597.b.a.a	ENSGT01030000234623.a.a.b.a	ENSGT00940000157218.A	ENSGT00950000183053.A.a.b	ENSGT00940000157582.g #21	ENSGT00940000155543 #22	ENSGT00940000157669.a.b	ENSGT00940000157034	ENSGT00940000165028.a	ENSGT00940000156585.c.a	ENSGT00390000013174	ENSGT00940000155194.v.b	ENSGT00950000183172.B	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b
Barramundi perch	MODERN SPECIES	17	ENSLCAG00010007006	zgc:66448 (ENSLCAG00010007003)	ENSLCAG00010007002	ENSLCAG00010006998	ENSLCAG00010006992	ENSLCAG00010006989	ENSLCAG00010006986	ENSLCAG00010006974	ptprub (ENSLCAG00010006339)	paqr7b (ENSLCAG00010006131)	ENSLCAG00010006116	SERINC2 (ENSLCAG00010006107)	HIVEP3 (ENSLCAG00010006102)	ENSLCAG00010006098	phactr4b (ENSLCAG00010006089) #21	rcc1 (ENSLCAG00010006074) #22	oprd1b (ENSLCAG00010006067)	tcea3 (ENSLCAG00010006056)	tent5ba (ENSLCAG00010006052)	zdhhc18a (ENSLCAG00010006030)	pigv (ENSLCAG00010006015)	ARID1A (ENSLCAG00010005961)	gpn2 (ENSLCAG00010005939)	gpatch3 (ENSLCAG00010005931)	nr0b2a (ENSLCAG00010005929)	ENSLCAG00010005924	tpbgl (ENSLCAG00010005921)	tmem222a (ENSLCAG00010005916)	wdtc1 (ENSLCAG00010005904)	CEP85 (ENSLCAG00010005896)	ENSLCAG00010005892
Seriola	ANCESTRAL SPECIES	16	ENSGT00990000203729	ENSGT01030000234576.D.a.a.b.a.a.a.b	ENSGT00980000198710	ENSGT00940000166158.a.b	ENSGT00940000162287.B.b	ENSGT00940000154446.b.b.b	ENSGT00940000164800	ENSGT00410000025596.a.b.a #26	ENSGT00940000157151.c	ENSGT00940000161438	ENSGT01030000234597.b.a.a	ENSGT01030000234623.a.a.b.a	ENSGT00940000157218.A	ENSGT00950000183053.A.a.b	ENSGT00940000157582.g #21	ENSGT00940000155543 #22	ENSGT00940000157669.a.b	ENSGT00940000157034	ENSGT00940000165028.a	ENSGT00940000156585.c.a	ENSGT00390000013174	ENSGT00940000155194.v.b	ENSGT00950000183172.B	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00390000016565.g	ENSGT00940000154868.a.b.b	ENSGT00390000007371.f	ENSGT00950000182900.B	ENSGT00620000087993.a.b	ENSGT00520000055567.b
Greater amberjack	MODERN SPECIES	115	ENSSDUG00000013335	ENSSDUG00000013310	ENSSDUG00000013296	ENSSDUG00000013280	ENSSDUG00000013265	si:ch211-79k12.2 (ENSSDUG00000013255)	ENSSDUG00000013228	ENSSDUG00000013191 #26	ptprub (ENSSDUG00000013071)	paqr7b (ENSSDUG00000013043)	ENSSDUG00000013023	SERINC2 (ENSSDUG00000012980)	HIVEP3 (ENSSDUG00000012961)	ENSSDUG00000012937	phactr4b (ENSSDUG00000012869) #21	rcc1 (ENSSDUG00000012833) #22	oprd1b (ENSSDUG00000012827)
Yellowtail amberjack	MODERN SPECIES	2995	ENSSLDG00000015722	ENSSLDG00000015754	ENSSLDG00000015777	ENSSLDG00000015796	si:ch211-79k12.2 (ENSSLDG00000015808)	ENSSLDG00000015829	ENSSLDG00000015848 #26	ptprub (ENSSLDG00000015932)	paqr7b (ENSSLDG00000016083)	ENSSLDG00000016093	SERINC2 (ENSSLDG00000016116)	HIVEP3 (ENSSLDG00000016152)	ENSSLDG00000016169	ENSSLDG00000016182 #21	ENSSLDG00000016201 #21	rcc1 (ENSSLDG00000016252) #22	oprd1b (ENSSLDG00000016293)	tcea3 (ENSSLDG00000016343)	tent5ba (ENSSLDG00000016410)	zdhhc18a (ENSSLDG00000016425)	pigv (ENSSLDG00000016450)	ARID1A (ENSSLDG00000016482)	gpn2 (ENSSLDG00000016533)	gpatch3 (ENSSLDG00000016549)	nr0b2a (ENSSLDG00000016566)	ENSSLDG00000016576	tpbgl (ENSSLDG00000016590)	tmem222a (ENSSLDG00000016627)	wdtc1 (ENSSLDG00000016693)	CEP85 (ENSSLDG00000016737)	ENSSLDG00000016759
Pinecone sodierfish	MODERN SPECIES	7	ENSMMDG00005015194	ENSMMDG00005015192	ENSMMDG00005015189	ENSMMDG00005015186	ENSMMDG00005015184	si:ch211-79k12.2 (ENSMMDG00005015181)	ENSMMDG00005015176	ENSMMDG00005015167 #26	ptprub (ENSMMDG00005015164)	paqr7b (ENSMMDG00005015163)	ENSMMDG00005015162	SERINC2 (ENSMMDG00005015078)	HIVEP3 (ENSMMDG00005015072)	ENSMMDG00005015069	phactr4b (ENSMMDG00005015066) #21	rcc1 (ENSMMDG00005015055) #22	oprd1b (ENSMMDG00005015052)	tcea3 (ENSMMDG00005015050)	ENSMMDG00005015048	tent5ba (ENSMMDG00005015044)	zdhhc18a (ENSMMDG00005015039)	pigv (ENSMMDG00005015036)	ARID1A (ENSMMDG00005014527)	gpn2 (ENSMMDG00005014502)	nr0b2a (ENSMMDG00005014497)	tpbgl (ENSMMDG00005014485)	tmem222a (ENSMMDG00005014430)	wdtc1 (ENSMMDG00005014107)	CEP85 (ENSMMDG00005014101)	ENSMMDG00005014099	ENSMMDG00005014097
Cod	MODERN SPECIES	2	ENSGMOG00000031835	ENSGMOG00000034380	prss1 (ENSGMOG00000003902)	ENSGMOG00000030546	ENSGMOG00000033770	ENSGMOG00000003821	ENSGMOG00000020149	ENSGMOG00000013503	ENSGMOG00000029343 #26	ptprub (ENSGMOG00000006363)	paqr7b (ENSGMOG00000006355)	ENSGMOG00000006334	ENSGMOG00000006318	ENSGMOG00000036739	phactr4b (ENSGMOG00000006295) #21	rcc1 (ENSGMOG00000006282) #22	oprd1b (ENSGMOG00000006272)	tcea3 (ENSGMOG00000006251)	ENSGMOG00000026851	gpd1l (ENSGMOG00000000073)	zgc:77056 (ENSGMOG00000000096)	tmem42a (ENSGMOG00000026376)	zdhhc3a (ENSGMOG00000000100)	mc2r (ENSGMOG00000027626)	mc5rb (ENSGMOG00000024612)	fam210ab (ENSGMOG00000025945)	ldlrad4b (ENSGMOG00000027185)	ENSGMOG00000023843	ENSGMOG00000013565	ENSGMOG00000034566	ENSGMOG00000032926
Protacanthopterygii	ANCESTRAL SPECIES	162	ENSGT00940000157999	ENSGT00530000063624.C.b	ENSGT00910000144179.b.b.o.a	ENSGT00940000164873	ENSGT00390000002144 #25	ENSGT00940000164800	ENSGT00410000025596.a.b.a #26	ENSGT00940000157151.c	ENSGT00940000161438	ENSGT01030000234597.b.a.b	ENSGT00990000203824	ENSGT01030000234623.a.a.b.a	ENSGT00940000157218.A	ENSGT00950000183053.A.a.b	ENSGT00940000157582.g #21	ENSGT00940000155543 #22	ENSGT00940000157669.a.b	ENSGT00940000157034	ENSGT00940000165028.a	ENSGT00940000156585.c.a	ENSGT00390000013174	ENSGT00940000155194.v.b	ENSGT00950000183172.B	ENSGT00390000004191
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	435	ENSGT00940000157999.g.a	ENSGT00530000063624.C.b.e	ENSGT00910000144179.b.b.o.a	ENSGT00940000164873	ENSGT00390000002144.eb #25	ENSGT00390000002144.db.a #25	ENSGT00940000164800	ENSGT00410000025596.a.b.a #26	ENSGT00940000157151.c.c	ENSGT00940000161438.f	ENSGT01030000234597.b.a.b.k	ENSGT01030000234623.a.a.b.a	ENSGT00940000157218.A.c	ENSGT00950000183053.A.a.b.b	ENSGT00940000157582.g.l #21	ENSGT00940000155543.q #22	ENSGT00940000157669.a.b	ENSGT00940000157034.l	ENSGT00940000165028.a	ENSGT00940000156585.c.a	ENSGT00390000013174.c	ENSGT00940000155194.v.b.d	ENSGT00950000183172.B	ENSGT00390000004191
Salmoninae_a	ANCESTRAL SPECIES	90	ENSGT00940000157284.cb.a.e.a	ENSGT00940000157999.g.a	ENSGT00530000063624.C.b.e	ENSGT00910000144179.b.b.o.a	ENSGT00940000164873	ENSGT00390000002144.db.a #25	ENSGT00940000164800	ENSGT00410000025596.a.b.a #26	ENSGT00940000157151.c.c	ENSGT00940000161438.f	ENSGT01030000234597.b.a.b.k	ENSGT01030000234623.a.a.b.a	ENSGT00940000157218.A.c	ENSGT00950000183053.A.a.b.b	ENSGT00940000157582.g.l #21	ENSGT00940000155543.q #22	ENSGT00940000157669.a.b	ENSGT00940000157034.l.a	ENSGT00940000165028.a	ENSGT00940000156585.c.a	ENSGT00390000013174.c	ENSGT00940000155194.v.b.d	ENSGT00950000183172.B	ENSGT00390000004191
Oncorhynchus	ANCESTRAL SPECIES	3	ENSGT00940000157284.cb.a.e.a	ENSGT00940000157999.g.a	ENSGT00530000063624.C.b.e	ENSGT00910000144179.b.b.o.a	ENSGT00940000164873	ENSGT00390000002144.db.a #25	ENSGT00940000164800	ENSGT00410000025596.a.b.a #26	ENSGT00940000157151.c.c	ENSGT00940000161438.f	ENSGT01030000234597.b.a.b.k	ENSGT01030000234623.a.a.b.a	ENSGT00940000157218.A.c	ENSGT00950000183053.A.a.b.b	ENSGT00940000157582.g.l #21	ENSGT00940000155543.q #22	ENSGT00940000157669.a.b	ENSGT00940000157034.l.a	ENSGT00940000165028.a	ENSGT00940000156585.c.a	ENSGT00390000013174.c	ENSGT00940000155194.v.b.d	ENSGT00950000183172.B	ENSGT00390000004191	ENSGT00940000160645.o.y.a	ENSGT00940000154200.A.a.c	ENSGT00390000017163.f	ENSGT01030000234518.C.a.b.a.a.f	ENSGT01030000234518.C.a.b.a.b.a.c	ENSGT00390000001134.a.a.e.a	ENSGT00940000156711.k.a.d
Oncorhynchus_a	ANCESTRAL SPECIES	8	ENSGT00940000157284.cb.a.e.a	ENSGT00940000157999.g.a	ENSGT00530000063624.C.b.e	ENSGT00910000144179.b.b.o.a	ENSGT00940000164873	ENSGT00390000002144.db.a #25	ENSGT00940000164800	ENSGT00410000025596.a.b.a #26	ENSGT00940000157151.c.c	ENSGT00940000161438.f	ENSGT01030000234597.b.a.b.k	ENSGT01030000234623.a.a.b.a	ENSGT00940000157218.A.c	ENSGT00950000183053.A.a.b.b	ENSGT00940000157582.g.l #21	ENSGT00940000155543.q #22	ENSGT00940000157669.a.b	ENSGT00940000157034.l.a	ENSGT00940000165028.a	ENSGT00940000156585.c.a	ENSGT00390000013174.c	ENSGT00940000155194.v.b.d	ENSGT00950000183172.B	ENSGT00390000004191	ENSGT00940000160645.o.y.a	ENSGT00940000154200.A.a.c	ENSGT01030000234518.C.a.b.a.a.f	ENSGT01030000234518.C.a.b.a.b.a.c	ENSGT00390000001134.a.a.e.a	ENSGT00940000156711.k.a.d	ENSGT00940000158108.e.b
Coho salmon	MODERN SPECIES	11	SCMH1 (ENSOKIG00005001662)	cited4b (ENSOKIG00005001670)	ctps1b (ENSOKIG00005001681)	rab42b (ENSOKIG00005001723)	taf12 (ENSOKIG00005001728) #25	ENSOKIG00005001738	ENSOKIG00005001755	ENSOKIG00005001758 #26	ptprub (ENSOKIG00005001813)	paqr7b (ENSOKIG00005001998)	stmn1b (ENSOKIG00005002020)	SERINC2 (ENSOKIG00005002099)	HIVEP3 (ENSOKIG00005002312)	ENSOKIG00005002337	phactr4b (ENSOKIG00005002352) #21	rcc1 (ENSOKIG00005002411) #22	oprd1b (ENSOKIG00005002433)	tcea3 (ENSOKIG00005002447)	tent5ba (ENSOKIG00005002483)	zdhhc18a (ENSOKIG00005002491)	pigv (ENSOKIG00005002504)	ARID1A (ENSOKIG00005002549)	ENSOKIG00005002807	gpn2 (ENSOKIG00005002815)	gpatch3 (ENSOKIG00005002824)	ENSOKIG00005002830	ENSOKIG00005002832	zic2a (ENSOKIG00005002847)	zic5 (ENSOKIG00005002886)	si:ch211-184m13.4 (ENSOKIG00005002894)	gpr183a (ENSOKIG00005002901)
Chinook salmon	MODERN SPECIES	22	vegfaa (ENSOTSG00005005278)	SCMH1 (ENSOTSG00005005279)	cited4b (ENSOTSG00005005280)	ctps1b (ENSOTSG00005005284)	rab42b (ENSOTSG00005005316)	taf12 (ENSOTSG00005005317) #25	ENSOTSG00005005318	ENSOTSG00005005320 #26	ptprub (ENSOTSG00005005335)	ENSOTSG00005005609	stmn1b (ENSOTSG00005005613)	SERINC2 (ENSOTSG00005005615)	HIVEP3 (ENSOTSG00005005626)	ENSOTSG00005005631	phactr4b (ENSOTSG00005005633) #21	rcc1 (ENSOTSG00005005639) #22	oprd1b (ENSOTSG00005005641)	ENSOTSG00005005684	tent5ba (ENSOTSG00005005689)	zdhhc18a (ENSOTSG00005005691)	pigv (ENSOTSG00005005695)	ARID1A (ENSOTSG00005005704)	gpn2 (ENSOTSG00005005934)	gpatch3 (ENSOTSG00005005936)	ENSOTSG00005005938	zic2a (ENSOTSG00005005940)	zic5 (ENSOTSG00005005943)	si:ch211-184m13.4 (ENSOTSG00005005944)	gpr183a (ENSOTSG00005005945)	dachd (ENSOTSG00005005947)	KLF5 (ENSOTSG00005005979)
Salmo	ANCESTRAL SPECIES	32	ENSGT00940000157284.cb.a.e.a	ENSGT00940000157999.g.a	ENSGT00530000063624.C.b.e	ENSGT00910000144179.b.b.o.a.a	ENSGT00940000164873.c	ENSGT00390000002144.db.b #25	ENSGT00940000164800	ENSGT00410000025596.a.b.a #26	ENSGT00940000157151.c.c	ENSGT00940000161438.f	ENSGT01030000234597.b.a.b.k	ENSGT01030000234623.a.a.b.a	ENSGT00940000157218.A.c	ENSGT00950000183053.A.a.b.b	ENSGT00940000157582.g.l #21	ENSGT00940000155543.q #22	ENSGT00940000157034.l.a	ENSGT00940000165028.a	ENSGT00940000156585.c.a	ENSGT00390000013174.c	ENSGT00940000155194.v.b.d	ENSGT00950000183172.B	ENSGT00390000004191
Atlantic salmon	MODERN SPECIES	11	ENSSSAG00000104619	scmh1 (ENSSSAG00000068322)	ENSSSAG00000115755	ctps1b (ENSSSAG00000068380)	rab42 (ENSSSAG00000068537)	ENSSSAG00000068550	gmeb1 (ENSSSAG00000068563) #26	ptprub (ENSSSAG00000068605)	paqr7b (ENSSSAG00000115054)	STMN1 (ENSSSAG00000068953)	ENSSSAG00000068981	ENSSSAG00000105804	ENSSSAG00000069315	ENSSSAG00000069324	phactr4b (ENSSSAG00000069332) #21	rcc1 (ENSSSAG00000069351) #22	ENSSSAG00000090360	tcea3 (ENSSSAG00000069484)	tent5ba (ENSSSAG00000050458)	zdhhc18a (ENSSSAG00000069501)	arid1a (ENSSSAG00000069566)	gpn2 (ENSSSAG00000070860)	gpatch3 (ENSSSAG00000070879)	ENSSSAG00000092313	ENSSSAG00000071336	ENSSSAG00000111253	ENSSSAG00000089860	ENSSSAG00000076665	ENSSSAG00000032372	ENSSSAG00000092843	ENSSSAG00000089129
River trout	MODERN SPECIES	30	ctps1b (ENSSTUG00000047288)	ENSSTUG00000047377	ENSSTUG00000047379	taf12 (ENSSTUG00000047381) #25	ENSSTUG00000047384	ENSSTUG00000047397 #26	ptprub (ENSSTUG00000047433)	ENSSTUG00000048277	ENSSTUG00000048280	paqr7b (ENSSTUG00000048282)	stmn1b (ENSSTUG00000022068)	SERINC2 (ENSSTUG00000022099)	HIVEP3 (ENSSTUG00000022677)	ENSSTUG00000022703	phactr4b (ENSSTUG00000022729) #21	rcc1 (ENSSTUG00000022864) #22	ENSSTUG00000022933	tcea3 (ENSSTUG00000022935)	ENSSTUG00000022950	tent5ba (ENSSTUG00000022952)
Huchen	MODERN SPECIES	912										paqr7b (ENSHHUG00000018024)	stmn1b (ENSHHUG00000018015)	SERINC2 (ENSHHUG00000017904)	HIVEP3 (ENSHHUG00000017799)	ENSHHUG00000017779	phactr4b (ENSHHUG00000017762) #21	rcc1 (ENSHHUG00000017746) #22	oprd1b (ENSHHUG00000017340)
Salmoninae	ANCESTRAL SPECIES	1073													ENSGT00940000157218.A.d	ENSGT00950000183053.A.a.b.a	ENSGT00940000157582.g.k #21	ENSGT00940000155543.r #22	ENSGT00940000157034.k
Salmoninae_a	ANCESTRAL SPECIES	39								ENSGT00940000157999.g.b	ENSGT00530000063624.C.b.f	ENSGT00940000157151.c.d	ENSGT00940000161438.e	ENSGT01030000234597.b.a.b.l.a.b	ENSGT00940000157218.A.d	ENSGT00950000183053.A.a.b.a	ENSGT00940000157582.g.k #21	ENSGT00940000155543.r #22	ENSGT00940000157034.k	ENSGT00390000013174.d	ENSGT00940000155194.v.b.c	ENSGT00940000157284.cb.a.e.b	ENSGT00390000008751.a.fb.c	ENSGT00390000001960.v	ENSGT00940000157390.s	ENSGT00940000159171.h	ENSGT00390000018031.h	ENSGT00940000156549.a.a.f	ENSGT00940000153634.b.a.d	ENSGT00950000182834.B.b	ENSGT00390000017627.a.a.b.a	ENSGT00950000183186.B.b.c	ENSGT01030000234610.a.b.e
Oncorhynchus	DUPLICATION
Oncorhynchus	ANCESTRAL SPECIES	38							ENSGT00940000157999.g.b	ENSGT00530000063624.C.b.f	ENSGT00390000002144.db.b #25	ENSGT00940000157151.c.d	ENSGT00940000161438.e	ENSGT01030000234597.b.a.b.l.b	ENSGT00940000157218.A.d	ENSGT00950000183053.A.a.b.a	ENSGT00940000157582.g.k #21	ENSGT00940000155543.r.a #22	ENSGT00940000157034.k	ENSGT00390000013174.d	ENSGT00940000155634.r	ENSGT00940000157284.cb.a.e.b	ENSGT00390000008751.a.fb.c	ENSGT00390000001960.v.a	ENSGT00940000157390.s	ENSGT00940000159171.h	ENSGT00390000018031.h	ENSGT00940000156549.a.a.f	ENSGT00940000153634.b.a.d	ENSGT00950000182834.B.b	ENSGT00390000017627.a.a.b.a	ENSGT00950000183186.B.b.c	ENSGT01030000234610.a.b.e
Oncorhynchus_a	ANCESTRAL SPECIES	39							ENSGT00940000157999.g.b	ENSGT00530000063624.C.b.f	ENSGT00390000002144.db.b #25	ENSGT00940000157151.c.d	ENSGT00940000161438.e	ENSGT01030000234597.b.a.b.l.b	ENSGT00940000157218.A.d	ENSGT00950000183053.A.a.b.a	ENSGT00940000157582.g.k #21	ENSGT00940000155543.r.a #22	ENSGT00940000157034.k	ENSGT00390000013174.d	ENSGT00940000155634.r	ENSGT00940000157284.cb.a.e.b	ENSGT00390000008751.a.fb.c	ENSGT00390000001960.v.a	ENSGT00940000157390.s	ENSGT00940000159171.h	ENSGT00390000018031.h	ENSGT00940000156549.a.a.f	ENSGT00940000153634.b.a.d	ENSGT00950000182834.B.b	ENSGT00390000017627.a.a.b.a	ENSGT00950000183186.B.b.c	ENSGT01030000234610.a.b.e
Chinook salmon	MODERN SPECIES	15										paqr7b (ENSOTSG00005004673)	stmn1b (ENSOTSG00005004671)	HIVEP3 (ENSOTSG00005004666)	ENSOTSG00005004651	ENSOTSG00005004649	phactr4b (ENSOTSG00005004617) #21	rcc1 (ENSOTSG00005004613) #22	tcea3 (ENSOTSG00005004608)	pigv (ENSOTSG00005004600)	ENSOTSG00005004195	ENSOTSG00005004179	vegfaa (ENSOTSG00005004156)	NAGA (ENSOTSG00005004153)	ENSOTSG00005004151	rrp15 (ENSOTSG00005004148)	tgfb2 (ENSOTSG00005004144)	lyplal1 (ENSOTSG00005004139)	preb (ENSOTSG00005004135)	ADCY3 (ENSOTSG00005003666)	WDR26 (ENSOTSG00005002988)	CNIH4 (ENSOTSG00005002967)	FEZ2 (ENSOTSG00005002951)
Coho salmon	MODERN SPECIES	4	kif14 (ENSOKIG00005004477)	ENSOKIG00005004819	nr5a2 (ENSOKIG00005004843)	ENSOKIG00005004886	ENSOKIG00005004890	ENSOKIG00005004898	SCMH1 (ENSOKIG00005004914)	ENSOKIG00005004931	TAF12 (ENSOKIG00005004936) #25	PTPRU (ENSOKIG00005005018)	paqr7b (ENSOKIG00005006020)	stmn1b (ENSOKIG00005006037)	HIVEP3 (ENSOKIG00005006070)	ENSOKIG00005006094	phactr4b (ENSOKIG00005006164) #21	rcc1 (ENSOKIG00005006236) #22	ENSOKIG00005006319	tcea3 (ENSOKIG00005006353)	PIGV (ENSOKIG00005006460)	ARID1A (ENSOKIG00005006522)	ENSOKIG00005007011	NAGA (ENSOKIG00005007071)	rrp15 (ENSOKIG00005007123)	tgfb2 (ENSOKIG00005007159)	lyplal1 (ENSOKIG00005007205)	preb (ENSOKIG00005007247)	ADCY3 (ENSOKIG00005007287)	WDR26 (ENSOKIG00005007431)	CNIH4 (ENSOKIG00005007854)	ENSOKIG00005007873	CLEC3B (ENSOKIG00005007908)
Rainbow trout	MODERN SPECIES	21	ENSOMYG00000000230	taf12 (ENSOMYG00000000253) #25	ENSOMYG00000000293	ENSOMYG00000054674	ENSOMYG00000049734 #26	ENSOMYG00000052771	ptprub (ENSOMYG00000000944)	ENSOMYG00000052192	ENSOMYG00000070211	paqr7b (ENSOMYG00000001487)	stmn1b (ENSOMYG00000001544)	ENSOMYG00000001660	ENSOMYG00000001695	ENSOMYG00000056786	phactr4b (ENSOMYG00000001920) #21	rcc1 (ENSOMYG00000001984) #22	oprd1b (ENSOMYG00000002011)	tent5ba (ENSOMYG00000002026)	ENSOMYG00000002046	zdhhc18a (ENSOMYG00000002087)	pigv (ENSOMYG00000002118)	ARID1A (ENSOMYG00000002303)	gpn2 (ENSOMYG00000002432)	ENSOMYG00000002494	zic2a (ENSOMYG00000002557)	zic5 (ENSOMYG00000002573)	CLYBL (ENSOMYG00000002623)	ENSOMYG00000075859	si:ch211-184m13.4 (ENSOMYG00000002639)	gpr183a (ENSOMYG00000002661)	dachd (ENSOMYG00000002697)
Oncorhynchus	ANCESTRAL SPECIES																	ENSGT00940000155543.r.b #22
Rainbow trout	MODERN SPECIES	11	ENSOMYG00000048081	ENSOMYG00000006194	ENSOMYG00000057940	ENSOMYG00000004470	ENSOMYG00000004431	ENSOMYG00000056916	ENSOMYG00000004391 #25	ENSOMYG00000002750	ENSOMYG00000060511	paqr7b (ENSOMYG00000060010)	stmn1b (ENSOMYG00000001160)	ENSOMYG00000001133	ENSOMYG00000076565	ENSOMYG00000001095	phactr4b (ENSOMYG00000001081) #21	rcc1 (ENSOMYG00000001061) #22	tcea3 (ENSOMYG00000000986)	ENSOMYG00000000940	ENSOMYG00000000855	ENSOMYG00000065253	ENSOMYG00000049957	ENSOMYG00000000708	ENSOMYG00000061903	ENSOMYG00000000680	ENSOMYG00000075765	ENSOMYG00000000625	RRP15 (ENSOMYG00000000540)	ENSOMYG00000052309	tgfb2 (ENSOMYG00000000524)	lyplal1 (ENSOMYG00000000518)	preb (ENSOMYG00000000508)
Huchen	MODERN SPECIES	5030																rcc1 (ENSHHUG00000049602) #22	tcea3 (ENSHHUG00000049605)
Northern pike	MODERN SPECIES	19						taf12 (ENSELUG00000015868) #25	ENSELUG00000026704	paqr7b (ENSELUG00000015883)	stmn1b (ENSELUG00000015921)	ENSELUG00000015951	SERINC2 (ENSELUG00000015971)	HIVEP3 (ENSELUG00000015990)	ENSELUG00000024841	ENSELUG00000027876	phactr4b (ENSELUG00000004642) #21	rcc1 (ENSELUG00000004595) #22	tcea3 (ENSELUG00000025239)	tent5ba (ENSELUG00000022620)	ENSELUG00000022636	ENSELUG00000026130	pigv (ENSELUG00000022642)	ARID1A (ENSELUG00000022658)	gpn2 (ENSELUG00000022696)	gpatch3 (ENSELUG00000000963)	ENSELUG00000033167	ENSELUG00000025108	vegfaa (ENSELUG00000022721)	ENSELUG00000029571	ENSELUG00000030588	rrp15 (ENSELUG00000011708)	tgfb2 (ENSELUG00000024911)
Osteoglossiformes	ANCESTRAL SPECIES	214	ENSGT00940000165224.a.a.k	ENSGT00530000063624.C.b	ENSGT00910000144179.b.b	ENSGT00940000159933.g.a	ENSGT00940000164873	ENSGT00390000002144 #25	ENSGT00410000025596.a.b.a #26	ENSGT00940000157151.c	ENSGT00940000161438	ENSGT01030000234597.b.a.b.a	ENSGT00990000203811	ENSGT01030000234623.a.a.b.a	ENSGT00940000157218.B.f	ENSGT00950000183053.A.a.b	ENSGT00940000157582.g #21	ENSGT00940000155543 #22	ENSGT00940000157669	ENSGT00940000157034	ENSGT00940000165028	ENSGT00940000156585.c.a	ENSGT00390000013174	ENSGT00940000155194.s	ENSGT00940000166269	ENSGT00950000183172.B	ENSGT00390000004191	ENSGT00390000015719.c.c	ENSGT00940000157815.a	ENSGT01030000234912
P. kingsleyae	MODERN SPECIES	86	cited4b (ENSPKIG00000021357)	ctps1b (ENSPKIG00000021247)	ENSPKIG00000021215	rab42b (ENSPKIG00000021209)	taf12 (ENSPKIG00000021181) #25	ENSPKIG00000021140	GMEB1 (ENSPKIG00000021105) #26	ptprub (ENSPKIG00000021043)	paqr7b (ENSPKIG00000021024)	stmn1b (ENSPKIG00000021005)	ENSPKIG00000020992	SERINC2 (ENSPKIG00000020976)	HIVEP3 (ENSPKIG00000020945)	ENSPKIG00000020906	phactr4b (ENSPKIG00000020770) #21	rcc1 (ENSPKIG00000020659) #22	oprd1b (ENSPKIG00000020632)	ENSPKIG00000020603	ENSPKIG00000020589	tcea3 (ENSPKIG00000020421)	ENSPKIG00000020348	ENSPKIG00000020331	zdhhc18a (ENSPKIG00000020311)	pigv (ENSPKIG00000020294)	ARID1A (ENSPKIG00000020205)	ENSPKIG00000020121	tbxta (ENSPKIG00000020107)	gpn2 (ENSPKIG00000020086)	gpatch3 (ENSPKIG00000020073)	nr0b2a (ENSPKIG00000020062)	rspo3 (ENSPKIG00000020046)
Asian bonytongue	MODERN SPECIES	23	cited4b (ENSSFOG00015012426)	ctps1b (ENSSFOG00015012240)	rab42b (ENSSFOG00015012088)	taf12 (ENSSFOG00015028702) #25	ENSSFOG00015011999 #26	ENSSFOG00015011989	ptprub (ENSSFOG00015011919)	ENSSFOG00015027073	paqr7b (ENSSFOG00015021484)	stmn1b (ENSSFOG00015026859)	ENSSFOG00015021506	SERINC2 (ENSSFOG00015021513)	HIVEP3 (ENSSFOG00015021540)	ENSSFOG00015021562	phactr4b (ENSSFOG00015021603) #21	rcc1 (ENSSFOG00015021697) #22	oprd1b (ENSSFOG00015021784)	tcea3 (ENSSFOG00015022165)	tent5bb (ENSSFOG00015022222)	ZDHHC18 (ENSSFOG00015022228)	SLC6A20 (ENSSFOG00015022234)	SNRPD1 (ENSSFOG00015030736)	ENSSFOG00015026619	lars2 (ENSSFOG00015022305)	TMEM158 (ENSSFOG00015022373)	CLEC3B (ENSSFOG00015031060)	exosc7 (ENSSFOG00015022389)	TGM4 (ENSSFOG00015022410)	tmem42a (ENSSFOG00015025814)	zgc:77056 (ENSSFOG00015022450)	gpd1l (ENSSFOG00015022432)
Spotted gar	MODERN SPECIES	672	smpdl3b (ENSLOCG00000003393) #11	ctps1b (ENSLOCG00000003415)	ENSLOCG00000003441	rab42a (ENSLOCG00000003453)	rab42b (ENSLOCG00000003467)	taf12 (ENSLOCG00000003480) #25	ENSLOCG00000003494	gmeb1 (ENSLOCG00000003512) #26	ptprub (ENSLOCG00000003524)	paqr7b (ENSLOCG00000018278)	stmn1b (ENSLOCG00000003586)	serinc2 (ENSLOCG00000003610)	HIVEP3 (ENSLOCG00000003625)	edn2 (ENSLOCG00000003640)	phactr4b (ENSLOCG00000003653) #21	rcc1 (ENSLOCG00000003672) #22	oprd1b (ENSLOCG00000003690)	ENSLOCG00000003703	tcea3 (ENSLOCG00000003716)	tent5bb (ENSLOCG00000003743)	ENSLOCG00000003768	pigv (ENSLOCG00000003786)	ARID1A (ENSLOCG00000003798)	gpn2 (ENSLOCG00000003822)	tbxta (ENSLOCG00000003838)	gpatch3 (ENSLOCG00000003858)	nudc (ENSLOCG00000003879)	nr0b2a (ENSLOCG00000003893)	KDF1 (ENSLOCG00000003910)	tpbga (ENSLOCG00000003925)	tmem222a (ENSLOCG00000003943)
Reedfish	MODERN SPECIES	5	LAPTM5 (ENSECRG00000017676)	ENSECRG00000017702	SDC3 (ENSECRG00000017726)	pum1 (ENSECRG00000017752)	nkain1 (ENSECRG00000017809)	snrnp40 (ENSECRG00000017853)	zcchc17 (ENSECRG00000017887)	fabp3 (ENSECRG00000017903)	ENSECRG00000017926	ENSECRG00000017943	serinc2 (ENSECRG00000017958)	HIVEP3 (ENSECRG00000017985)	edn2 (ENSECRG00000018001)	ENSECRG00000018015 #21	ENSECRG00000018041 #21	rcc1 (ENSECRG00000018062) #22	oprd1a (ENSECRG00000018125)	ENSECRG00000018410	ENSECRG00000018418	tcea3 (ENSECRG00000018452)	asap3 (ENSECRG00000018503)	ENSECRG00000018559	id3 (ENSECRG00000018578)	id3 (ENSECRG00000018596)	ENSECRG00000018627	ythdf2 (ENSECRG00000018661)	vgll2b (ENSECRG00000018694)	ctsl.1 (ENSECRG00000018721)	ctsl.1 (ENSECRG00000018740)	ctsl.1 (ENSECRG00000018764)	qkia (ENSECRG00000018803)
Elephant shark	MODERN SPECIES	1521	ENSCMIG00000018454	sh3bgrl3 (ENSCMIG00000018451)	CEP85 (ENSCMIG00000018446)	rps6ka1 (ENSCMIG00000018104)	ENSCMIG00000017831	ENSCMIG00000017760	ENSCMIG00000017755	ENSCMIG00000017749	ENSCMIG00000017747	ENSCMIG00000017743	serinc2 (ENSCMIG00000017704)	ENSCMIG00000017659	ENSCMIG00000017657	ENSCMIG00000017654	ENSCMIG00000017646 #21	rcc1 (ENSCMIG00000017636) #22	oprd1a (ENSCMIG00000017620)	tcea3 (ENSCMIG00000017608)	asap3 (ENSCMIG00000017594)	ENSCMIG00000017587	ENSCMIG00000017584	ENSCMIG00000017577	ENSCMIG00000017574	cited4b (ENSCMIG00000017572)	ENSCMIG00000017549	rab42a (ENSCMIG00000017544)	ENSCMIG00000017541	ENSCMIG00000017537	ENSCMIG00000017535	zcchc17 (ENSCMIG00000017532)	snrnp40 (ENSCMIG00000017529)
Cyclostomata	ANCESTRAL SPECIES	493															ENSGT00390000013215	ENSGT00940000155543 #22
Lamprey	DUPLICATION
Lamprey	MODERN SPECIES	5387																ENSPMAG00000006855 #22
Lamprey	MODERN SPECIES	1242															sf3b5 (ENSPMAG00000010296)	rcc1 (ENSPMAG00000004047) #22
Hagfish	MODERN SPECIES	1049													PLAGL1 (ENSEBUG00000013956)	ACP1 (ENSEBUG00000001702)	sf3b5 (ENSEBUG00000002311)	rcc1 (ENSEBUG00000005726) #22	ENSEBUG00000013311	ENSEBUG00000011013	ENSEBUG00000015871	ENSEBUG00000004744	ENSEBUG00000014880	kidins220b (ENSEBUG00000004784)	ENSEBUG00000010901	ENSEBUG00000000767	ENSEBUG00000014210	ENSEBUG00000013766	ENSEBUG00000005496	ENSEBUG00000008945	ENSEBUG00000007566	ENSEBUG00000016743	ENSEBUG00000015800
Ciona	ANCESTRAL SPECIES	537																ENSGT00940000155543 #22	ENSGT00390000005345	ENSGT00940000156862
Ciona intestinalis	MODERN SPECIES	11	ENSCING00000001794	ENSCING00000011855	ENSCING00000020892	ENSCING00000023298	ENSCING00000021964	ENSCING00000022409	ENSCING00000022724	ENSCING00000023426	ENSCING00000019724	ENSCING00000020219	ENSCING00000001445	ENSCING00000021841	ENSCING00000011853	ENSCING00000017922	ENSCING00000023548	rcc1 (ENSCING00000003107) #22	ENSCING00000019522	ENSCING00000003104	ENSCING00000003101	ENSCING00000003090	ENSCING00000011850	ENSCING00000011851	ENSCING00000016112	ENSCING00000003087	ENSCING00000021836	ENSCING00000020734	ENSCING00000020054	ENSCING00000012080	ENSCING00000020826	ENSCING00000003150	ENSCING00000003143
Ciona savignyi	MODERN SPECIES	154	ENSCSAVG00000007443	ENSCSAVG00000007445	ENSCSAVG00000007469	ENSCSAVG00000007517	ENSCSAVG00000007532	ENSCSAVG00000007590	ENSCSAVG00000007592	ENSCSAVG00000007676	ENSCSAVG00000007677	ENSCSAVG00000007682	ENSCSAVG00000007765	ENSCSAVG00000007771	ENSCSAVG00000007775	ENSCSAVG00000007813	ENSCSAVG00000007819	ENSCSAVG00000007967 #22	ENSCSAVG00000008048	ENSCSAVG00000008119	ENSCSAVG00000008147	ENSCSAVG00000008149	ENSCSAVG00000008163	ENSCSAVG00000008166	ENSCSAVG00000008169	ENSCSAVG00000008171	ENSCSAVG00000008172	ENSCSAVG00000008174	ENSCSAVG00000008176	ENSCSAVG00000008185	ENSCSAVG00000008187	ENSCSAVG00000008188	ENSCSAVG00000008192