Euarchontoglires_A	ANCESTRAL SPECIES		ENSGT00940000157554 #7	ENSGT00940000160073 #8	ENSGT01000000214440.A.a.b.a #9	ENSGT00940000156115 #10	ENSGT00530000063770.c.a #11	ENSGT00390000010045 #12	ENSGT00950000183182.a.a #13	ENSGT01090000260093.b #14	ENSGT00950000182978.B #15	ENSGT01060000248589.D #16	ENSGT00390000012569.a #17	ENSGT00390000006264 #18	ENSGT00950000183168.B.a #19	ENSGT00390000003312 #20	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #24	ENSGT00940000162094 #23	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761 #27	ENSGT00940000157669 #28	ENSGT00940000157833 #29	ENSGT00530000063698.b	ENSGT00940000156213 #30	ENSGT00940000156592 #31	ENSGT00940000157151 #32	ENSGT00940000159638 #33	ENSGT00940000153446.a.b	ENSGT00940000160209 #34	ENSGT00940000158079 #35
Glires	ANCESTRAL SPECIES		ENSGT00940000157554 #7	ENSGT00940000160073 #8	ENSGT01000000214440.A.a.b.a #9	ENSGT00940000156115 #10	ENSGT00530000063770.c.a #11	ENSGT00390000010045 #12	ENSGT00950000183182.a.a #13	ENSGT01090000260093.b #14	ENSGT00950000182978.B #15	ENSGT01060000248589.D #16	ENSGT00390000012569.a #17	ENSGT00390000006264 #18	ENSGT00950000183168.B.a #19	ENSGT00390000003312 #20	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #24	ENSGT00940000162094 #23	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761 #27	ENSGT00940000157669 #28	ENSGT00940000157833 #29	ENSGT00530000063698.b	ENSGT00940000156213 #30	ENSGT00940000156592 #31	ENSGT00940000157151 #32	ENSGT00940000159638 #33	ENSGT00940000153446.a.b	ENSGT00940000160209 #34	ENSGT00940000158079 #35
Rodentia	ANCESTRAL SPECIES		ENSGT00940000157554 #7	ENSGT00940000160073 #8	ENSGT01000000214440.A.a.b.a #9	ENSGT00940000156115 #10	ENSGT00530000063770.c.a #11	ENSGT00390000010045 #12	ENSGT00950000183182.a.a #13	ENSGT01090000260093.b #14	ENSGT00950000182978.B #15	ENSGT01060000248589.D #16	ENSGT00390000012569.a #17	ENSGT00390000006264 #18	ENSGT00950000183168.B.a #19	ENSGT00390000003312 #20	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #24	ENSGT00940000162094 #23	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761 #27	ENSGT00940000157669 #28	ENSGT00940000157833 #29	ENSGT00530000063698.b	ENSGT00940000156213 #30	ENSGT00940000156592 #31	ENSGT00940000157151 #32	ENSGT00940000159638 #33	ENSGT00940000153446.a.b	ENSGT00940000160209 #34	ENSGT00940000158079 #35
Rodentia_B	ANCESTRAL SPECIES		ENSGT00940000157554 #7	ENSGT00940000160073 #8	ENSGT01000000214440.A.a.b.a #9	ENSGT00940000156115 #10	ENSGT00530000063770.c.a #11	ENSGT00390000010045 #12	ENSGT00950000183182.a.a #13	ENSGT01090000260093.b #14	ENSGT00950000182978.B #15	ENSGT01060000248589.D #16	ENSGT00390000012569.a #17	ENSGT00390000006264 #18	ENSGT00950000183168.B.a #19	ENSGT00390000003312 #20	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #24	ENSGT00940000162094 #23	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761 #27	ENSGT00940000157669 #28	ENSGT00940000157833 #29	ENSGT00530000063698.b	ENSGT00940000156213 #30	ENSGT00940000156592 #31	ENSGT00940000157151 #32	ENSGT00940000159638 #33	ENSGT00940000153446.a.b	ENSGT00940000160209 #34	ENSGT00940000158079 #35
Kangaroo rat	MODERN SPECIES	325	Fgr (ENSDORG00000015238) #7	Fam76a (ENSDORG00000000575) #8	Stx12 (ENSDORG00000001059) #9	ENSDORG00000025172 #10	Themis2 (ENSDORG00000003740) #11	Rpa2 (ENSDORG00000003741) #12	Smpdl3b (ENSDORG00000015612) #13	Xkr8 (ENSDORG00000023428) #14	Eya3 (ENSDORG00000015614) #15	Ptafr (ENSDORG00000027100) #16	Dnajc8 (ENSDORG00000004488) #17	Atpif1 (ENSDORG00000004489) #18	Sesn2 (ENSDORG00000004491) #19	Med18 (ENSDORG00000003626) #20	Phactr4 (ENSDORG00000003281) #21	Rcc1 (ENSDORG00000008750) #22	Rab42 (ENSDORG00000023607) #23	Trnau1ap (ENSDORG00000006349) #24	Taf12 (ENSDORG00000015036) #25	Gmeb1 (ENSDORG00000027761) #26	Ythdf2 (ENSDORG00000016564) #27	Oprd1 (ENSDORG00000015419) #28	ENSDORG00000028662 #29	Srsf4 (ENSDORG00000002459) #30	Mecr (ENSDORG00000002462) #31	Ptpru (ENSDORG00000002463) #32	Matn1 (ENSDORG00000009341) #33	Sdc3 (ENSDORG00000013924) #34	Pum1 (ENSDORG00000001875) #35	Nkain1 (ENSDORG00000000481) #36	Lrrc38 (ENSDORG00000030076) #37
Myomorpha	ANCESTRAL SPECIES	3	ENSGT00940000157554 #7	ENSGT00940000160073 #8	ENSGT01000000214440.A.a.b.a #9	ENSGT00940000156115 #10	ENSGT00530000063770.c.a #11	ENSGT00390000010045 #12	ENSGT00950000183182.a.a #13	ENSGT01090000260093.b #14	ENSGT00950000182978.B #15	ENSGT01060000248589.D #16	ENSGT00390000012569.a #17	ENSGT00390000006264 #18	ENSGT00950000183168.B.a #19	ENSGT00390000003312 #20	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #24	ENSGT00940000162094 #23	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761 #27	ENSGT00940000157669 #28	ENSGT00940000157833 #29	ENSGT00530000063698.b	ENSGT00940000156213 #30	ENSGT00940000156592 #31	ENSGT00940000157151 #32	ENSGT00940000159638 #33	ENSGT00940000153446.a.b	ENSGT00940000160209 #34	ENSGT00940000158079 #35
Muroidea	ANCESTRAL SPECIES	3	ENSGT00940000157554 #7	ENSGT00940000160073 #8	ENSGT01000000214440.A.a.b.a #9	ENSGT00940000156115 #10	ENSGT00530000063770.c.a #11	ENSGT00390000010045 #12	ENSGT00950000183182.a.a #13	ENSGT01090000260093.b #14	ENSGT00950000182978.B #15	ENSGT01060000248589.D #16	ENSGT00390000012569.a #17	ENSGT00390000006264 #18	ENSGT00950000183168.B.a #19	ENSGT00390000003312 #20	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #24	ENSGT00940000162094 #23	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761 #27	ENSGT00940000157669 #28	ENSGT00940000157833 #29	ENSGT00530000063698.b	ENSGT00940000156213 #30	ENSGT00940000156592 #31	ENSGT00940000157151 #32	ENSGT00940000159638 #33	ENSGT00940000153446.a.b	ENSGT00940000160209 #34	ENSGT00940000158079 #35
Muroidea_A	ANCESTRAL SPECIES	3	ENSGT00940000157554 #7	ENSGT00940000160073 #8	ENSGT01000000214440.A.a.b.a #9	ENSGT00940000156115 #10	ENSGT00530000063770.c.a #11	ENSGT00390000010045 #12	ENSGT00950000183182.a.a #13	ENSGT01090000260093.b #14	ENSGT00950000182978.B #15	ENSGT01060000248589.D #16	ENSGT00390000012569.a #17	ENSGT00390000006264 #18	ENSGT00950000183168.B.a #19	ENSGT00390000003312 #20	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #24	ENSGT00940000162094 #23	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761 #27	ENSGT00940000157669 #28	ENSGT00860000135912	ENSGT00940000157833 #29	ENSGT00530000063698.b	ENSGT00940000156213 #30	ENSGT00940000156592 #31	ENSGT00940000157151 #32	ENSGT00940000159638 #33	ENSGT00940000153446.a.b	ENSGT00940000160209 #34
Cricetidae	ANCESTRAL SPECIES	2	ENSGT00390000018883	ENSGT00940000157554 #7	ENSGT00940000160073 #8	ENSGT01000000214440.A.a.b.a #9	ENSGT00940000156115 #10	ENSGT00530000063770.c.a #11	ENSGT00390000010045 #12	ENSGT00950000183182.a.a #13	ENSGT01090000260093.b #14	ENSGT00950000182978.B #15	ENSGT01060000248589.D #16	ENSGT00940000164617	ENSGT00950000183168.B.a #19	ENSGT00390000003312 #20	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #24	ENSGT00940000162094 #23	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761 #27	ENSGT00940000157669 #28	ENSGT00860000135912	ENSGT00940000157833 #29	ENSGT00530000063698.b	ENSGT00940000156213 #30	ENSGT00940000156592 #31	ENSGT00940000157151 #32	ENSGT00940000159638 #33	ENSGT00940000153446.a.b	ENSGT00940000160209 #34
Cricetinae	ANCESTRAL SPECIES	5	ENSGT00940000157554 #7	ENSGT00940000160073 #8	ENSGT01000000214440.A.a.b.a #9	ENSGT00940000156115 #10	ENSGT00530000063770.c.a #11	ENSGT00390000010045 #12	ENSGT00950000183182.a.a #13	ENSGT01090000260093.b #14	ENSGT00950000182978.B #15	ENSGT01060000248589.D #16	ENSGT00390000012569.a #17	ENSGT00390000006264 #18	ENSGT00950000183168.B.a #19	ENSGT00390000003312 #20	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #24	ENSGT00940000162094 #23	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761 #27	ENSGT00940000157669 #28	ENSGT00860000135912	ENSGT00940000157833 #29	ENSGT00530000063698.b	ENSGT00940000156213 #30	ENSGT00940000156592 #31	ENSGT00940000157151 #32	ENSGT00940000159638 #33	ENSGT00940000153446.a.b	ENSGT00940000160209 #34
Chinese hamster chok1gshd	DUPLICATION
Chinese hamster chok1gshd	MODERN SPECIES	111	Fgr (ENSCGRG00001024485) #7	ENSCGRG00001007863 #8	Stx12 (ENSCGRG00001016934) #9	Ppp1r8 (ENSCGRG00001019839) #10	Themis2 (ENSCGRG00001024729) #11	Rpa2 (ENSCGRG00001007332) #12	Smpdl3b (ENSCGRG00001016883) #13	Xkr8 (ENSCGRG00001017118) #14	Eya3 (ENSCGRG00001018576) #15	Ptafr (ENSCGRG00001012404) #16	ENSCGRG00001000534 #17	Atpif1 (ENSCGRG00001023397) #18	Sesn2 (ENSCGRG00001020650) #19	MED18 (ENSCGRG00001022480) #20	Phactr4 (ENSCGRG00001021956) #21	ENSCGRG00001023596 #22	Trnau1ap (ENSCGRG00001004713) #24	Rab42 (ENSCGRG00001019426) #23	Taf12 (ENSCGRG00001024959) #25	Gmeb1 (ENSCGRG00001022851) #26	Ythdf2 (ENSCGRG00001016726) #27	Oprd1 (ENSCGRG00001010255) #28	ENSCGRG00001024915	Epb41 (ENSCGRG00001021983) #29	Tmem200b (ENSCGRG00001010757)	Srsf4 (ENSCGRG00001021115) #30	Mecr (ENSCGRG00001024597) #31	Ptpru (ENSCGRG00001023937) #32	Matn1 (ENSCGRG00001019479) #33	Laptm5 (ENSCGRG00001021108)	Sdc3 (ENSCGRG00001023681) #34
Chinese hamster chok1gshd	MODERN SPECIES	1	ENSCGRG00001010369	2210408I21Rik (ENSCGRG00001009297)	Slf1 (ENSCGRG00001007173)	Mctp1 (ENSCGRG00001011214)	ENSCGRG00001007825	Fam81b (ENSCGRG00001005643)	Skic3 (ENSCGRG00001016182)	Arsk (ENSCGRG00001019637)	ENSCGRG00001010656	Rfesd (ENSCGRG00001018403)	Spata9 (ENSCGRG00001018426)	Rhobtb3 (ENSCGRG00001016766)	Glrx (ENSCGRG00001012408)	Ell2 (ENSCGRG00001012065)	Pcsk1 (ENSCGRG00001012020)	ENSCGRG00001007082 #22	Cast (ENSCGRG00001002654)	Erap1 (ENSCGRG00001007105)	ENSCGRG00001007786	ENSCGRG00001008373	Lnpep (ENSCGRG00001016259)	Lix1 (ENSCGRG00001017834)	Riok2 (ENSCGRG00001000871)	ENSCGRG00001024900	ENSCGRG00001009968	Rgmb (ENSCGRG00001012341)	Chd1 (ENSCGRG00001023943)	Prdm9 (ENSCGRG00001005716)	Pdcd2 (ENSCGRG00001010000)	Tbp (ENSCGRG00001001372)	Psmb1 (ENSCGRG00001009770)
Golden Hamster	MODERN SPECIES	709	Ahdc1 (ENSMAUG00000013108)	Fgr (ENSMAUG00000006765) #7	Fam76a (ENSMAUG00000016561) #8	Stx12 (ENSMAUG00000016314) #9	Ppp1r8 (ENSMAUG00000009797) #10	Themis2 (ENSMAUG00000000821) #11	Rpa2 (ENSMAUG00000002825) #12	Smpdl3b (ENSMAUG00000014184) #13	Xkr8 (ENSMAUG00000009395) #14	Eya3 (ENSMAUG00000015674) #15	Ptafr (ENSMAUG00000008850) #16	ENSMAUG00000018320	Sesn2 (ENSMAUG00000000726) #19	Med18 (ENSMAUG00000019176) #20	Phactr4 (ENSMAUG00000018484) #21	Rcc1 (ENSMAUG00000020618) #22	ENSMAUG00000020183	Rab42 (ENSMAUG00000020223) #23	Taf12 (ENSMAUG00000019991) #25	Gmeb1 (ENSMAUG00000008912) #26	ENSMAUG00000010032 #27	Oprd1 (ENSMAUG00000012704) #28	ENSMAUG00000001636 #29	Tmem200b (ENSMAUG00000021672)	Srsf4 (ENSMAUG00000021940) #30	Mecr (ENSMAUG00000021996) #31	Ptpru (ENSMAUG00000016330) #32	Matn1 (ENSMAUG00000019156) #33	Laptm5 (ENSMAUG00000013566)	Pum1 (ENSMAUG00000022090) #35	Nkain1 (ENSMAUG00000010811) #36
Cricetidae_B	ANCESTRAL SPECIES	2	ENSGT00940000157554 #7	ENSGT00940000160073 #8	ENSGT01000000214440.A.a.b.a #9	ENSGT00940000156115 #10	ENSGT00530000063770.c.a #11	ENSGT00390000010045 #12	ENSGT00950000183182.a.a #13	ENSGT01090000260093.b #14	ENSGT00950000182978.B #15	ENSGT01060000248589.D #16	ENSGT00390000012569.a #17	ENSGT00390000006264 #18	ENSGT00950000183168.B.a #19	ENSGT00390000003312 #20	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #24	ENSGT00940000162094 #23	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761 #27	ENSGT00940000157669 #28	ENSGT00940000157833 #29	ENSGT00530000063698.b	ENSGT00940000156213 #30	ENSGT00940000156592 #31	ENSGT00940000157151 #32	ENSGT00940000159638 #33	ENSGT00940000153446.a.b	ENSGT00940000160209 #34	ENSGT00940000158079 #35
Northern American deer mouse	MODERN SPECIES	11	ENSPEMG00000014678 #8	Stx12 (ENSPEMG00000025346) #9	Ppp1r8 (ENSPEMG00000003512) #10	Themis2 (ENSPEMG00000008336) #11	Rpa2 (ENSPEMG00000006270) #12	Smpdl3b (ENSPEMG00000003316) #13	Xkr8 (ENSPEMG00000025921) #14	Eya3 (ENSPEMG00000000391) #15	Ptafr (ENSPEMG00000025544) #16	Dnajc8 (ENSPEMG00000013544) #17	Atpif1 (ENSPEMG00000025196) #18	Sesn2 (ENSPEMG00000001779) #19	Med18 (ENSPEMG00000015562) #20	ENSPEMG00000004708	Phactr4 (ENSPEMG00000000179) #21	Rcc1 (ENSPEMG00000016697) #22	Trnau1ap (ENSPEMG00000007877) #24	Rab42 (ENSPEMG00000027698) #23	Taf12 (ENSPEMG00000015879) #25	Ythdf2 (ENSPEMG00000014903) #27	Oprd1 (ENSPEMG00000007805) #28	Epb41 (ENSPEMG00000016438) #29	Tmem200b (ENSPEMG00000012688)	Srsf4 (ENSPEMG00000003365) #30	Mecr (ENSPEMG00000009582) #31	Ptpru (ENSPEMG00000010874) #32	Matn1 (ENSPEMG00000017513) #33	Laptm5 (ENSPEMG00000016483)	Sdc3 (ENSPEMG00000015709) #34	Pum1 (ENSPEMG00000010009) #35	Nkain1 (ENSPEMG00000000116) #36
Prairie vole	MODERN SPECIES	1	Fgr (ENSMOCG00000019562) #7	Fam76a (ENSMOCG00000021395) #8	Stx12 (ENSMOCG00000014196) #9	ENSMOCG00000022691 #10	Themis2 (ENSMOCG00000003168) #11	Rpa2 (ENSMOCG00000007092) #12	Smpdl3b (ENSMOCG00000016324) #13	Xkr8 (ENSMOCG00000002218) #14	Eya3 (ENSMOCG00000004582) #15	Ptafr (ENSMOCG00000013409) #16	Dnajc8 (ENSMOCG00000017213) #17	Atpif1 (ENSMOCG00000002419) #18	Sesn2 (ENSMOCG00000012718) #19	Med18 (ENSMOCG00000022182) #20	Phactr4 (ENSMOCG00000012753) #21	Rcc1 (ENSMOCG00000016589) #22	Trnau1ap (ENSMOCG00000011189) #24	Rab42 (ENSMOCG00000021639) #23	Taf12 (ENSMOCG00000006333) #25	Gmeb1 (ENSMOCG00000012332) #26	Ythdf2 (ENSMOCG00000018361) #27	Oprd1 (ENSMOCG00000018388) #28	Epb41 (ENSMOCG00000022373) #29	Tmem200b (ENSMOCG00000014010)	Srsf4 (ENSMOCG00000013319) #30	Mecr (ENSMOCG00000017926) #31	Ptpru (ENSMOCG00000019862) #32	Matn1 (ENSMOCG00000011816) #33	Laptm5 (ENSMOCG00000014297)	Sdc3 (ENSMOCG00000020345) #34	Pum1 (ENSMOCG00000015463) #35
Murinae	ANCESTRAL SPECIES	2	ENSGT00940000157554 #7	ENSGT00940000160073 #8	ENSGT01000000214440.A.a.b.a #9	ENSGT00940000156115 #10	ENSGT00530000063770.c.a #11	ENSGT00390000010045 #12	ENSGT00950000183182.a.a #13	ENSGT01090000260093.b #14	ENSGT00950000182978.B #15	ENSGT01060000248589.D #16	ENSGT00390000012569.a #17	ENSGT00390000006264 #18	ENSGT00950000183168.B.a #19	ENSGT00390000003312 #20	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #24	ENSGT00940000162094 #23	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761 #27	ENSGT00940000157669 #28	ENSGT00860000135912	ENSGT00940000157833 #29	ENSGT00530000063698.b	ENSGT00940000156213 #30	ENSGT00940000156592 #31	ENSGT00940000157151 #32	ENSGT00940000159638 #33	ENSGT00940000153446.a.b	ENSGT00940000160209 #34
Mus	ANCESTRAL SPECIES	3	ENSGT00940000157554 #7	ENSGT00940000160073 #8	ENSGT01000000214440.A.a.b.a #9	ENSGT00940000156115 #10	ENSGT00530000063770.c.a #11	ENSGT00390000010045 #12	ENSGT00950000183182.a.a #13	ENSGT01090000260093.b #14	ENSGT00950000182978.B #15	ENSGT01060000248589.D #16	ENSGT00390000012569.a #17	ENSGT00390000006264 #18	ENSGT00950000183168.B.a #19	ENSGT00390000003312 #20	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #24	ENSGT00940000162094 #23	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761 #27	ENSGT00940000157669 #28	ENSGT00860000135912	ENSGT00940000157833 #29	ENSGT00530000063698.b	ENSGT00940000156213 #30	ENSGT00940000156592 #31	ENSGT00940000157151 #32	ENSGT00940000159638 #33	ENSGT00940000153446.a.b	ENSGT00940000160209 #34
Mus_A	ANCESTRAL SPECIES	3	ENSGT00940000157554 #7	ENSGT00940000160073 #8	ENSGT01000000214440.A.a.b.a #9	ENSGT00940000156115 #10	ENSGT00530000063770.c.a #11	ENSGT00390000010045 #12	ENSGT00950000183182.a.a #13	ENSGT01090000260093.b #14	ENSGT00950000182978.B #15	ENSGT01060000248589.D #16	ENSGT00390000012569.a #17	ENSGT00390000006264 #18	ENSGT00950000183168.B.a #19	ENSGT00390000003312 #20	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #24	ENSGT00940000162094 #23	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761 #27	ENSGT00940000157669 #28	ENSGT00860000135912	ENSGT00940000157833 #29	ENSGT00530000063698.b	ENSGT00940000156213 #30	ENSGT00940000156592 #31	ENSGT00940000157151 #32	ENSGT00940000159638 #33	ENSGT00940000153446.a.b	ENSGT00940000160209 #34
Mus_B	ANCESTRAL SPECIES	5	ENSGT00940000157554 #7	ENSGT00940000160073 #8	ENSGT01000000214440.A.a.b.a #9	ENSGT00940000156115 #10	ENSGT00530000063770.c.a #11	ENSGT00390000010045 #12	ENSGT00950000183182.a.a #13	ENSGT01090000260093.b #14	ENSGT00950000182978.B #15	ENSGT01060000248589.D #16	ENSGT00390000012569.a #17	ENSGT00390000006264 #18	ENSGT00950000183168.B.a #19	ENSGT00390000003312 #20	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #24	ENSGT00940000162094 #23	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761 #27	ENSGT00940000157669 #28	ENSGT00860000135912	ENSGT00940000157833 #29	ENSGT00530000063698.b	ENSGT00940000156213 #30	ENSGT00940000156592 #31	ENSGT00940000157151 #32	ENSGT00940000159638 #33	ENSGT00940000153446.a.b	ENSGT00940000160209 #34
Mouse	MODERN SPECIES	13	Fgr (ENSMUSG00000028874) #7	Fam76a (ENSMUSG00000028878) #8	Stx12 (ENSMUSG00000028879) #9	Ppp1r8 (ENSMUSG00000028882) #10	Themis2 (ENSMUSG00000037731) #11	Rpa2 (ENSMUSG00000028884) #12	Smpdl3b (ENSMUSG00000028885) #13	Xkr8 (ENSMUSG00000037752) #14	Eya3 (ENSMUSG00000028886) #15	Ptafr (ENSMUSG00000056529) #16	Dnajc8 (ENSMUSG00000054405) #17	Atpif1 (ENSMUSG00000054428) #18	Sesn2 (ENSMUSG00000028893) #19	Med18 (ENSMUSG00000066042) #20	Phactr4 (ENSMUSG00000066043) #21	Rcc1 (ENSMUSG00000028896) #22	Trnau1ap (ENSMUSG00000028898) #24	Rab42 (ENSMUSG00000089687) #23	Taf12 (ENSMUSG00000028899) #25	Gmeb1 (ENSMUSG00000028901) #26	Ythdf2 (ENSMUSG00000040025) #27	Oprd1 (ENSMUSG00000050511) #28	Epb41 (ENSMUSG00000028906) #29	Tmem200b (ENSMUSG00000070720)	Srsf4 (ENSMUSG00000028911) #30	Mecr (ENSMUSG00000028910) #31	Ptpru (ENSMUSG00000028909) #32	Matn1 (ENSMUSG00000040533) #33	Laptm5 (ENSMUSG00000028581)	Sdc3 (ENSMUSG00000025743) #34	Pum1 (ENSMUSG00000028580) #35
Mus_C	ANCESTRAL SPECIES	2	ENSGT00940000157554 #7	ENSGT00940000160073.g #8	ENSGT01000000214440.A.a.b.a #9	ENSGT00940000156115 #10	ENSGT00530000063770.c.a #11	ENSGT00390000010045 #12	ENSGT00950000183182.a.a #13	ENSGT01090000260093.b #14	ENSGT00950000182978.B #15	ENSGT01060000248589.D #16	ENSGT00390000012569.a #17	ENSGT00390000006264 #18	ENSGT00950000183168.B.a #19	ENSGT00390000003312 #20	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #24	ENSGT00940000162094 #23	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761 #27	ENSGT00940000157669 #28	ENSGT00860000135912	ENSGT00940000157833 #29	ENSGT00530000063698.b	ENSGT00940000156213 #30	ENSGT00940000156592 #31	ENSGT00940000157151 #32	ENSGT00940000159638 #33	ENSGT00940000153446.a.b	ENSGT00940000160209 #34
Steppe mouse	MODERN SPECIES	2797				Themis2 (ENSMSIG00000008497) #11	Rpa2 (ENSMSIG00000008505) #12	Smpdl3b (ENSMSIG00000008523) #13	Eya3 (ENSMSIG00000008546) #15	Xkr8 (ENSMSIG00000008821) #14	Ptafr (ENSMSIG00000008840) #16	Dnajc8 (ENSMSIG00000008847) #17	ENSMSIG00000009011	Atpif1 (ENSMSIG00000009020) #18	Sesn2 (ENSMSIG00000009040) #19	Med18 (ENSMSIG00000009082) #20	Phactr4 (ENSMSIG00000009106) #21	Rcc1 (ENSMSIG00000009244) #22	ENSMSIG00000009341 #24	Rab42 (ENSMSIG00000009484) #23	Taf12 (ENSMSIG00000009505) #25	Gmeb1 (ENSMSIG00000009569) #26	ENSMSIG00000009595	ENSMSIG00000009602 #27	Oprd1 (ENSMSIG00000009620) #28	Epb41 (ENSMSIG00000009639) #29	ENSMSIG00000012064	Tmem200b (ENSMSIG00000012073)
spretus	MODERN SPECIES	13	Fgr (MGP_SPRETEiJ_G0027560) #7	Fam76a (MGP_SPRETEiJ_G0027559) #8	Stx12 (MGP_SPRETEiJ_G0027558) #9	Ppp1r8 (MGP_SPRETEiJ_G0027557) #10	Themis2 (MGP_SPRETEiJ_G0027556) #11	Rpa2 (MGP_SPRETEiJ_G0027555) #12	Smpdl3b (MGP_SPRETEiJ_G0027554) #13	Xkr8 (MGP_SPRETEiJ_G0027553) #14	Eya3 (MGP_SPRETEiJ_G0027552) #15	Ptafr (MGP_SPRETEiJ_G0027551) #16	Dnajc8 (MGP_SPRETEiJ_G0027550) #17	Atpif1 (MGP_SPRETEiJ_G0027549) #18	Sesn2 (MGP_SPRETEiJ_G0027548) #19	Med18 (MGP_SPRETEiJ_G0027547) #20	Phactr4 (MGP_SPRETEiJ_G0027546) #21	Rcc1 (MGP_SPRETEiJ_G0027545) #22	Trnau1ap (MGP_SPRETEiJ_G0027544) #24	Rab42 (MGP_SPRETEiJ_G0027543) #23	Taf12 (MGP_SPRETEiJ_G0027542) #25	Gmeb1 (MGP_SPRETEiJ_G0027541) #26	MGP_SPRETEiJ_G0027540 #27	Oprd1 (MGP_SPRETEiJ_G0027539) #28	MGP_SPRETEiJ_G0027538	Epb41 (MGP_SPRETEiJ_G0027537) #29	Tmem200b (MGP_SPRETEiJ_G0027536)	Srsf4 (MGP_SPRETEiJ_G0027535) #30	MGP_SPRETEiJ_G0027534 #31	Ptpru (MGP_SPRETEiJ_G0027533) #32	Matn1 (MGP_SPRETEiJ_G0027532) #33	Laptm5 (MGP_SPRETEiJ_G0027531)	Sdc3 (MGP_SPRETEiJ_G0027530) #34
Ryukyu mouse	MODERN SPECIES	13	Fgr (MGP_CAROLIEiJ_G0026579) #7	Fam76a (MGP_CAROLIEiJ_G0026578) #8	Stx12 (MGP_CAROLIEiJ_G0026577) #9	Ppp1r8 (MGP_CAROLIEiJ_G0026576) #10	Themis2 (MGP_CAROLIEiJ_G0026575) #11	Rpa2 (MGP_CAROLIEiJ_G0026574) #12	Smpdl3b (MGP_CAROLIEiJ_G0026573) #13	Xkr8 (MGP_CAROLIEiJ_G0026572) #14	Eya3 (MGP_CAROLIEiJ_G0026571) #15	Ptafr (MGP_CAROLIEiJ_G0026570) #16	MGP_CAROLIEiJ_G0026569 #17	Atpif1 (MGP_CAROLIEiJ_G0026568) #18	Sesn2 (MGP_CAROLIEiJ_G0026567) #19	Med18 (MGP_CAROLIEiJ_G0026566) #20	Phactr4 (MGP_CAROLIEiJ_G0026565) #21	Rcc1 (MGP_CAROLIEiJ_G0026564) #22	Trnau1ap (MGP_CAROLIEiJ_G0026563) #24	Gmeb1 (MGP_CAROLIEiJ_G0026561) #26	Oprd1 (MGP_CAROLIEiJ_G0026559) #28	MGP_CAROLIEiJ_G0026558	Epb41 (MGP_CAROLIEiJ_G0026557) #29	Tmem200b (MGP_CAROLIEiJ_G0026556)	Srsf4 (MGP_CAROLIEiJ_G0026555) #30	Mecr (MGP_CAROLIEiJ_G0026554) #31	Ptpru (MGP_CAROLIEiJ_G0026553) #32	Matn1 (MGP_CAROLIEiJ_G0026552) #33	Laptm5 (MGP_CAROLIEiJ_G0026551)	Sdc3 (MGP_CAROLIEiJ_G0026550) #34	Pum1 (MGP_CAROLIEiJ_G0026549) #35	Nkain1 (MGP_CAROLIEiJ_G0026548) #36	Snrnp40 (MGP_CAROLIEiJ_G0026547)
Shrew mouse	MODERN SPECIES	19	Fgr (MGP_PahariEiJ_G0028912) #7	Fam76a (MGP_PahariEiJ_G0028911) #8	MGP_PahariEiJ_G0028910 #9	Ppp1r8 (MGP_PahariEiJ_G0028909) #10	Themis2 (MGP_PahariEiJ_G0028908) #11	Rpa2 (MGP_PahariEiJ_G0028907) #12	Smpdl3b (MGP_PahariEiJ_G0028906) #13	Xkr8 (MGP_PahariEiJ_G0028905) #14	Eya3 (MGP_PahariEiJ_G0028904) #15	Ptafr (MGP_PahariEiJ_G0028903) #16	MGP_PahariEiJ_G0028902 #17	Atpif1 (MGP_PahariEiJ_G0028901) #18	Sesn2 (MGP_PahariEiJ_G0028900) #19	Med18 (MGP_PahariEiJ_G0028899) #20	Phactr4 (MGP_PahariEiJ_G0028898) #21	Rcc1 (MGP_PahariEiJ_G0028897) #22	Trnau1ap (MGP_PahariEiJ_G0028896) #24	Rab42 (MGP_PahariEiJ_G0028895) #23	Taf12 (MGP_PahariEiJ_G0028894) #25	Gmeb1 (MGP_PahariEiJ_G0028893) #26	Ythdf2 (MGP_PahariEiJ_G0028892) #27	Oprd1 (MGP_PahariEiJ_G0028891) #28	MGP_PahariEiJ_G0028890	Epb41 (MGP_PahariEiJ_G0028889) #29	Tmem200b (MGP_PahariEiJ_G0028888)	Srsf4 (MGP_PahariEiJ_G0028887) #30	Mecr (MGP_PahariEiJ_G0028886) #31	Ptpru (MGP_PahariEiJ_G0028885) #32	Matn1 (MGP_PahariEiJ_G0028884) #33	Laptm5 (MGP_PahariEiJ_G0028883)	Sdc3 (MGP_PahariEiJ_G0028882) #34
Rat	MODERN SPECIES	15	Fam76a (ENSRNOG00000011254) #8	Stx12 (ENSRNOG00000011804) #9	Ppp1r8 (ENSRNOG00000059550) #10	Themis2 (ENSRNOG00000012965) #11	Rpa2 (ENSRNOG00000013005) #12	Smpdl3b (ENSRNOG00000042326) #13	Xkr8 (ENSRNOG00000024312) #14	Eya3 (ENSRNOG00000010396) #15	Ptafr (ENSRNOG00000013231) #16	Dnajc8 (ENSRNOG00000013255) #17	Atp5if1 (ENSRNOG00000013300) #18	Sesn2 (ENSRNOG00000042785) #19	Med18 (ENSRNOG00000067073) #20	LOC120102993 (ENSRNOG00000031506)	Phactr4 (ENSRNOG00000046922) #21	Rcc1 (ENSRNOG00000050106) #22	Trnau1ap (ENSRNOG00000055344) #24	Rab42 (ENSRNOG00000063150) #23	Taf12 (ENSRNOG00000048288) #25	Gmeb1 (ENSRNOG00000010910) #26	Ythdf2 (ENSRNOG00000010892) #27	Oprd1 (ENSRNOG00000010531) #28	Epb41 (ENSRNOG00000010037) #29	Tmem200b (ENSRNOG00000065288)	Srsf4 (ENSRNOG00000010007) #30	Mecr (ENSRNOG00000028047) #31	Ptpru (ENSRNOG00000013515) #32	Matn1 (ENSRNOG00000010932) #33	Laptm5 (ENSRNOG00000011054)	Sdc3 (ENSRNOG00000011927) #34	Pum1 (ENSRNOG00000011709) #35
Upper Galilee mountains blind mole rat	MODERN SPECIES	1411						Rpa2 (ENSNGAG00000004922) #12	Smpdl3b (ENSNGAG00000018059) #13	Xkr8 (ENSNGAG00000000492) #14	Eya3 (ENSNGAG00000018153) #15	Ptafr (ENSNGAG00000012034) #16	Dnajc8 (ENSNGAG00000011117) #17	Atpif1 (ENSNGAG00000020924) #18	Sesn2 (ENSNGAG00000019093) #19	ENSNGAG00000020389 #20	Phactr4 (ENSNGAG00000004944) #21	Rcc1 (ENSNGAG00000000590) #22	Trnau1ap (ENSNGAG00000015881) #24	Rab42 (ENSNGAG00000015676) #23	ENSNGAG00000015280 #25	Gmeb1 (ENSNGAG00000015007) #26	Ythdf2 (ENSNGAG00000014432) #27	Oprd1 (ENSNGAG00000013802) #28	Epb41 (ENSNGAG00000013126) #29	Tmem200b (ENSNGAG00000012572)	Srsf4 (ENSNGAG00000012225) #30	Mecr (ENSNGAG00000011918) #31	Ptpru (ENSNGAG00000011573) #32
Lesser Egyptian jerboa	MODERN SPECIES	201	ENSJJAG00000002452 #8	Stx12 (ENSJJAG00000004079) #9	ENSJJAG00000010784 #10	Themis2 (ENSJJAG00000012926) #11	ENSJJAG00000014579 #12	Smpdl3b (ENSJJAG00000015036) #13	Xkr8 (ENSJJAG00000015552) #14	Eya3 (ENSJJAG00000017580) #15	Ptafr (ENSJJAG00000012719) #16	ENSJJAG00000009301	Atpif1 (ENSJJAG00000010517) #18	Sesn2 (ENSJJAG00000011184) #19	Phactr4 (ENSJJAG00000015640) #21	ENSJJAG00000022388	ENSJJAG00000012669	Rcc1 (ENSJJAG00000002119) #22	Trnau1ap (ENSJJAG00000010128) #24	Rab42 (ENSJJAG00000021507) #23	ENSJJAG00000022021 #25	Gmeb1 (ENSJJAG00000000647) #26	Ythdf2 (ENSJJAG00000013745) #27	ENSJJAG00000012769	Oprd1 (ENSJJAG00000015113) #28	Epb41 (ENSJJAG00000015995) #29	Tmem200b (ENSJJAG00000020828)	Srsf4 (ENSJJAG00000022153) #30	Mecr (ENSJJAG00000002955) #31	Ptpru (ENSJJAG00000012562) #32	ENSJJAG00000010350
Rodentia_A	ANCESTRAL SPECIES		ENSGT00940000157554 #7	ENSGT00940000160073 #8	ENSGT01000000214440.A.a.b.a #9	ENSGT00940000156115 #10	ENSGT00530000063770.c.a #11	ENSGT00390000010045 #12	ENSGT00950000183182.a.a #13	ENSGT01090000260093.b #14	ENSGT00950000182978.B #15	ENSGT01060000248589.D #16	ENSGT00390000012569.a #17	ENSGT00390000006264 #18	ENSGT00950000183168.B.a #19	ENSGT00390000003312 #20	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #24	ENSGT00940000162094 #23	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761.j #27	ENSGT00940000157669 #28	ENSGT00940000157833 #29	ENSGT00530000063698.b	ENSGT00940000156213 #30	ENSGT00940000156592 #31	ENSGT00940000157151 #32	ENSGT00940000159638 #33	ENSGT00940000153446.a.b	ENSGT00940000160209 #34	ENSGT00940000158079 #35
Sciuridae	ANCESTRAL SPECIES	3	ENSGT00940000157554 #7	ENSGT00940000160073 #8	ENSGT01000000214440.A.a.b.a #9	ENSGT00940000156115 #10	ENSGT00530000063770.c.a #11	ENSGT00390000010045 #12	ENSGT00950000183182.a.a #13	ENSGT01090000260093.b #14	ENSGT00950000182978.B #15	ENSGT01060000248589.D #16	ENSGT00390000012569.a #17	ENSGT00390000006264 #18	ENSGT00950000183168.B.a #19	ENSGT00390000003312 #20	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #24	ENSGT00940000162094 #23	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761.j #27	ENSGT00940000157669 #28	ENSGT00940000157833 #29	ENSGT00530000063698.b	ENSGT00940000156213 #30	ENSGT00940000156592 #31	ENSGT00940000157151 #32	ENSGT00940000159638 #33	ENSGT00940000153446.a.b	ENSGT00940000160209 #34	ENSGT00940000158079 #35
Marmotini	ANCESTRAL SPECIES		ENSGT00940000160073 #8	ENSGT01000000214440.A.a.b.a #9	ENSGT00960000190607	ENSGT00940000156115 #10	ENSGT00530000063770.c.a #11	ENSGT00390000010045 #12	ENSGT00950000183182.a.a #13	ENSGT01090000260093.b #14	ENSGT00950000182978.B #15	ENSGT01060000248589.D #16	ENSGT00390000012569.a #17	ENSGT00390000006264 #18	ENSGT00950000183168.B.a #19	ENSGT00390000003312 #20	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #24	ENSGT00940000162094 #23	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761.j #27	ENSGT00940000157669 #28	ENSGT00940000157833 #29	ENSGT00530000063698.b	ENSGT00940000156213 #30	ENSGT00940000156592 #31	ENSGT00940000157151 #32	ENSGT00940000159638 #33	ENSGT00940000153446.a.b	ENSGT00940000160209 #34	ENSGT00940000158079 #35
Marmotini_b	ANCESTRAL SPECIES		ENSGT00940000160073 #8	ENSGT01000000214440.A.a.b.a #9	ENSGT00960000190607	ENSGT00940000156115 #10	ENSGT00530000063770.c.a #11	ENSGT00390000010045 #12	ENSGT00950000183182.a.a #13	ENSGT01090000260093.b #14	ENSGT00950000182978.B #15	ENSGT01060000248589.D #16	ENSGT00390000012569.a #17	ENSGT00390000006264 #18	ENSGT00950000183168.B.a #19	ENSGT00390000003312 #20	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #24	ENSGT00940000162094 #23	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761.j #27	ENSGT00940000157669 #28	ENSGT00940000157833 #29	ENSGT00530000063698.b	ENSGT00940000156213 #30	ENSGT00940000156592 #31	ENSGT00940000157151 #32	ENSGT00940000159638 #33	ENSGT00940000153446.a.b	ENSGT00940000160209 #34	ENSGT00940000158079 #35
Arctic ground squirrel	MODERN SPECIES	92	FAM76A (ENSUPAG00010021053) #8	STX12 (ENSUPAG00010021044) #9	ENSUPAG00010021039	PPP1R8 (ENSUPAG00010021025) #10	THEMIS2 (ENSUPAG00010021016) #11	SMPDL3B (ENSUPAG00010021005) #13	XKR8 (ENSUPAG00010020998) #14	EYA3 (ENSUPAG00010020872) #15	PTAFR (ENSUPAG00010020865) #16	ENSUPAG00010020856	ATP5IF1 (ENSUPAG00010020850) #18	SESN2 (ENSUPAG00010020839) #19	ENSUPAG00010020838	MED18 (ENSUPAG00010020827) #20	PHACTR4 (ENSUPAG00010020803) #21	RCC1 (ENSUPAG00010020770) #22	TRNAU1AP (ENSUPAG00010020750) #24	RAB42 (ENSUPAG00010020728) #23	ENSUPAG00010020706 #25	GMEB1 (ENSUPAG00010020697) #26	YTHDF2 (ENSUPAG00010020684) #27	OPRD1 (ENSUPAG00010020681) #28	EPB41 (ENSUPAG00010019935) #29	TMEM200B (ENSUPAG00010019926)	SRSF4 (ENSUPAG00010019922) #30	MECR (ENSUPAG00010019905) #31	PTPRU (ENSUPAG00010019842) #32	MATN1 (ENSUPAG00010019827) #33	LAPTM5 (ENSUPAG00010019820)	SDC3 (ENSUPAG00010019810) #34	PUM1 (ENSUPAG00010019620) #35
Squirrel	MODERN SPECIES	74	FGR (ENSSTOG00000026717) #7	FAM76A (ENSSTOG00000004331) #8	STX12 (ENSSTOG00000019943) #9	PPP1R8 (ENSSTOG00000004381) #10	THEMIS2 (ENSSTOG00000034218) #11	RPA2 (ENSSTOG00000004433) #12	SMPDL3B (ENSSTOG00000004468) #13	XKR8 (ENSSTOG00000023254) #14	EYA3 (ENSSTOG00000004478) #15	PTAFR (ENSSTOG00000015934) #16	DNAJC8 (ENSSTOG00000012834) #17	ATP5IF1 (ENSSTOG00000020766) #18	SESN2 (ENSSTOG00000009293) #19	MED18 (ENSSTOG00000020723) #20	PHACTR4 (ENSSTOG00000006463) #21	RCC1 (ENSSTOG00000012131) #22	TRNAU1AP (ENSSTOG00000000079) #24	RAB42 (ENSSTOG00000000084) #23	TAF12 (ENSSTOG00000000086) #25	GMEB1 (ENSSTOG00000000088) #26	YTHDF2 (ENSSTOG00000025075) #27	OPRD1 (ENSSTOG00000011943) #28	EPB41 (ENSSTOG00000032103) #29	TMEM200B (ENSSTOG00000034064)	SRSF4 (ENSSTOG00000015908) #30	MECR (ENSSTOG00000026575) #31	PTPRU (ENSSTOG00000015915) #32	MATN1 (ENSSTOG00000014709) #33	LAPTM5 (ENSSTOG00000021660)	SDC3 (ENSSTOG00000027125) #34	PUM1 (ENSSTOG00000010757) #35
Alpin marmot	MODERN SPECIES	15	FAM76A (ENSMMMG00000013430) #8	STX12 (ENSMMMG00000013420) #9	ENSMMMG00000013416	PPP1R8 (ENSMMMG00000013396) #10	THEMIS2 (ENSMMMG00000013395) #11	RPA2 (ENSMMMG00000013382) #12	SMPDL3B (ENSMMMG00000013366) #13	XKR8 (ENSMMMG00000013348) #14	EYA3 (ENSMMMG00000013195) #15	PTAFR (ENSMMMG00000013184) #16	DNAJC8 (ENSMMMG00000013133) #17	ATP5IF1 (ENSMMMG00000013117) #18	SESN2 (ENSMMMG00000013099) #19	MED18 (ENSMMMG00000013084) #20	PHACTR4 (ENSMMMG00000013031) #21	RCC1 (ENSMMMG00000012973) #22	TRNAU1AP (ENSMMMG00000012958) #24	RAB42 (ENSMMMG00000012933) #23	TAF12 (ENSMMMG00000012915) #25	GMEB1 (ENSMMMG00000012888) #26	YTHDF2 (ENSMMMG00000012863) #27	OPRD1 (ENSMMMG00000012823) #28	EPB41 (ENSMMMG00000011984) #29	TMEM200B (ENSMMMG00000011965)	SRSF4 (ENSMMMG00000011951) #30	MECR (ENSMMMG00000011938) #31	PTPRU (ENSMMMG00000011811) #32	LAPTM5 (ENSMMMG00000011800)	SDC3 (ENSMMMG00000011746) #34	PUM1 (ENSMMMG00000011433) #35	NKAIN1 (ENSMMMG00000011409) #36
Eurasian red squirrel	MODERN SPECIES		STX12 (ENSSVLG00005010643) #9	PPP1R8 (ENSSVLG00005010667) #10	THEMIS2 (ENSSVLG00005010773) #11	RPA2 (ENSSVLG00005010920) #12	SMPDL3B (ENSSVLG00005011082) #13	XKR8 (ENSSVLG00005011375) #14	ENSSVLG00005011412	EYA3 (ENSSVLG00005011513) #15	PTAFR (ENSSVLG00005011699) #16	DNAJC8 (ENSSVLG00005011722) #17	ATP5IF1 (ENSSVLG00005011758) #18	SESN2 (ENSSVLG00005011840) #19	MED18 (ENSSVLG00005011896) #20	ENSSVLG00005011930	PHACTR4 (ENSSVLG00005011991) #21	RCC1 (ENSSVLG00005012359) #22	TRNAU1AP (ENSSVLG00005012466) #24	RAB42 (ENSSVLG00005012595) #23	ENSSVLG00005012624 #25	GMEB1 (ENSSVLG00005012698) #26	YTHDF2 (ENSSVLG00005012853) #27	ENSSVLG00005012949	OPRD1 (ENSSVLG00005012967) #28	EPB41 (ENSSVLG00005014395) #29	TMEM200B (ENSSVLG00005016580)	SRSF4 (ENSSVLG00005016599) #30	MECR (ENSSVLG00005016630) #31	PTPRU (ENSSVLG00005016704) #32	MATN1 (ENSSVLG00005016798) #33	LAPTM5 (ENSSVLG00005016884)	SDC3 (ENSSVLG00005016980) #34
Hystricomorpha	ANCESTRAL SPECIES	4	ENSGT00940000157554 #7	ENSGT00940000160073 #8	ENSGT01000000214440.A.a.b.a #9	ENSGT00940000156115 #10	ENSGT00530000063770.c.a #11	ENSGT00390000010045 #12	ENSGT00950000183182.a.a #13	ENSGT01090000260093.b #14	ENSGT00950000182978.B #15	ENSGT01060000248589.D #16	ENSGT00390000012569.a #17	ENSGT00390000006264 #18	ENSGT00950000183168.B.a #19	ENSGT00390000003312 #20	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #24	ENSGT00940000162094 #23	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761.j #27	ENSGT00940000157669 #28	ENSGT00940000157833 #29	ENSGT00530000063698.b	ENSGT00940000156213 #30	ENSGT00940000156592 #31	ENSGT00940000157151 #32	ENSGT00940000159638 #33	ENSGT00940000153446.a.b	ENSGT00940000160209 #34	ENSGT00940000158079 #35
Hystricomorpha_a	ANCESTRAL SPECIES	1	ENSGT00940000157554 #7	ENSGT00940000160073 #8	ENSGT01000000214440.A.a.b.a #9	ENSGT00940000156115 #10	ENSGT00530000063770.c.a #11	ENSGT00390000010045 #12	ENSGT00950000183182.a.a #13	ENSGT01090000260093.b #14	ENSGT00950000182978.B #15	ENSGT01060000248589.D #16	ENSGT00390000012569.a #17	ENSGT00390000006264 #18	ENSGT00950000183168.B.a #19	ENSGT00390000003312 #20	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #24	ENSGT00940000162094 #23	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761.j #27	ENSGT00940000157669 #28	ENSGT00940000157833 #29	ENSGT00530000063698.b	ENSGT00940000156213 #30	ENSGT00940000156592 #31	ENSGT00940000157151 #32	ENSGT00940000159638 #33	ENSGT00940000153446.a.b	ENSGT00940000160209 #34	ENSGT00940000158079 #35
Hystricomorpha_b	ANCESTRAL SPECIES	7	ENSGT00940000157554 #7	ENSGT00940000160073 #8	ENSGT01000000214440.A.a.b.a #9	ENSGT00940000156115 #10	ENSGT00530000063770.c.a #11	ENSGT00390000010045 #12	ENSGT00950000183182.a.a #13	ENSGT01090000260093.b #14	ENSGT00950000182978.B #15	ENSGT01060000248589.D #16	ENSGT00390000012569.a #17	ENSGT00390000006264 #18	ENSGT00950000183168.B.a #19	ENSGT00390000003312 #20	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #24	ENSGT00940000162094 #23	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761.j #27	ENSGT00940000157669 #28	ENSGT00940000157833 #29	ENSGT00530000063698.b	ENSGT00940000156213 #30	ENSGT00940000156592 #31	ENSGT00940000157151 #32	ENSGT00940000159638 #33	ENSGT00940000153446.a.b	ENSGT00940000160209 #34	ENSGT00940000158079 #35
Long-tailed chinchilla	MODERN SPECIES	159	FGR (ENSCLAG00000014147) #7	FAM76A (ENSCLAG00000008844) #8	STX12 (ENSCLAG00000013795) #9	PPP1R8 (ENSCLAG00000011211) #10	THEMIS2 (ENSCLAG00000012140) #11	RPA2 (ENSCLAG00000010772) #12	SMPDL3B (ENSCLAG00000011768) #13	XKR8 (ENSCLAG00000011287) #14	EYA3 (ENSCLAG00000008901) #15	PTAFR (ENSCLAG00000017842) #16	DNAJC8 (ENSCLAG00000007390) #17	ATP5IF1 (ENSCLAG00000014624) #18	SESN2 (ENSCLAG00000011979) #19	MED18 (ENSCLAG00000015343) #20	PHACTR4 (ENSCLAG00000016145) #21	RCC1 (ENSCLAG00000008107) #22	TRNAU1AP (ENSCLAG00000008223) #24	RAB42 (ENSCLAG00000010175) #23	TAF12 (ENSCLAG00000007187) #25	GMEB1 (ENSCLAG00000006804) #26	YTHDF2 (ENSCLAG00000007438) #27	OPRD1 (ENSCLAG00000010788) #28	EPB41 (ENSCLAG00000008568) #29	SRSF4 (ENSCLAG00000009008) #30	ENSCLAG00000017721	MECR (ENSCLAG00000010792) #31	PTPRU (ENSCLAG00000014778) #32	MATN1 (ENSCLAG00000008049) #33	LAPTM5 (ENSCLAG00000009573)	SDC3 (ENSCLAG00000010987) #34	PUM1 (ENSCLAG00000007662) #35
Degu	MODERN SPECIES	204	PPP1R8 (ENSODEG00000004352) #10	ENSODEG00000004373	THEMIS2 (ENSODEG00000004403) #11	ENSODEG00000004443 #12	ENSODEG00000003467 #13	XKR8 (ENSODEG00000003481) #14	EYA3 (ENSODEG00000003507) #15	PTAFR (ENSODEG00000018990) #16	ENSODEG00000003721 #17	ATP5IF1 (ENSODEG00000003747) #18	SESN2 (ENSODEG00000003769) #19	MED18 (ENSODEG00000003791) #20	ENSODEG00000003828	ENSODEG00000018954	PHACTR4 (ENSODEG00000003857) #21	RCC1 (ENSODEG00000003970) #22	TRNAU1AP (ENSODEG00000002970) #24	RAB42 (ENSODEG00000003021) #23	ENSODEG00000003043 #25	GMEB1 (ENSODEG00000003092) #26	ENSODEG00000003103 #27	OPRD1 (ENSODEG00000003121) #28	ENSODEG00000018881	ENSODEG00000018892	ENSODEG00000003178	ENSODEG00000003196 #29	TMEM200B (ENSODEG00000003209)	SRSF4 (ENSODEG00000003230) #30	MECR (ENSODEG00000003260) #31	PTPRU (ENSODEG00000003405) #32	MATN1 (ENSODEG00000003275) #33
Guinea pig	MODERN SPECIES	25	ENSCPOG00000031828	FAM76A (ENSCPOG00000006186) #8	STX12 (ENSCPOG00000013160) #9	PPP1R8 (ENSCPOG00000036078) #10	THEMIS2 (ENSCPOG00000033796) #11	RPA2 (ENSCPOG00000008766) #12	SMPDL3B (ENSCPOG00000008773) #13	ENSCPOG00000033302	EYA3 (ENSCPOG00000012512) #15	PTAFR (ENSCPOG00000031748) #16	DNAJC8 (ENSCPOG00000014652) #17	ATP5IF1 (ENSCPOG00000030836) #18	SESN2 (ENSCPOG00000000236) #19	MED18 (ENSCPOG00000038084) #20	PHACTR4 (ENSCPOG00000003219) #21	RCC1 (ENSCPOG00000010069) #22	TRNAU1AP (ENSCPOG00000001925) #24	RAB42 (ENSCPOG00000037627) #23	TAF12 (ENSCPOG00000009044) #25	GMEB1 (ENSCPOG00000032204) #26	YTHDF2 (ENSCPOG00000019907) #27	OPRD1 (ENSCPOG00000039511) #28	EPB41 (ENSCPOG00000007254) #29	TMEM200B (ENSCPOG00000020258)	SRSF4 (ENSCPOG00000036234) #30	MECR (ENSCPOG00000037475) #31	PTPRU (ENSCPOG00000000424) #32	ENSCPOG00000001380	MATN1 (ENSCPOG00000010146) #33	LAPTM5 (ENSCPOG00000007128)	SDC3 (ENSCPOG00000022452) #34
Naked mole-rat female	MODERN SPECIES	26	FAM76A (ENSHGLG00000009747) #8	ENSHGLG00000014326 #10	THEMIS2 (ENSHGLG00000019146) #11	RPA2 (ENSHGLG00000018528) #12	SMPDL3B (ENSHGLG00000012112) #13	XKR8 (ENSHGLG00000012712) #14	ENSHGLG00000046470	EYA3 (ENSHGLG00000018515) #15	ENSHGLG00000032519	PTAFR (ENSHGLG00000048424) #16	DNAJC8 (ENSHGLG00000011449) #17	ENSHGLG00000050011 #18	SESN2 (ENSHGLG00000011617) #19	MED18 (ENSHGLG00000049561) #20	PHACTR4 (ENSHGLG00000012380) #21	RCC1 (ENSHGLG00000010563) #22	ENSHGLG00000010380 #24	ENSHGLG00000032594 #24	RAB42 (ENSHGLG00000010181) #23	ENSHGLG00000049224 #25	GMEB1 (ENSHGLG00000012929) #26	ENSHGLG00000009933 #27	OPRD1 (ENSHGLG00000011866) #28	EPB41 (ENSHGLG00000012118) #29	TMEM200B (ENSHGLG00000049796)	SRSF4 (ENSHGLG00000011842) #30	MECR (ENSHGLG00000012855) #31	ENSHGLG00000014761 #32	ENSHGLG00000045877	ENSHGLG00000034685	ENSHGLG00000040884
Lagomorpha	ANCESTRAL SPECIES	21	ENSGT00950000182962.b.a	ENSGT00390000018883	ENSGT00940000157554 #7	ENSGT00940000160073 #8	ENSGT00940000156115 #10	ENSGT00530000063770.c.a #11	ENSGT00390000010045 #12	ENSGT00950000183182.a.a #13	ENSGT01090000260093.b #14	ENSGT00950000182978.B #15	ENSGT01060000248589.D #16	ENSGT00940000164617	ENSGT00390000006264 #18	ENSGT00950000183168.B.a #19	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #24	ENSGT00940000162094 #23	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761 #27	ENSGT00940000157669 #28	ENSGT00940000157833 #29	ENSGT00530000063698.b	ENSGT00940000156213 #30	ENSGT00940000156592 #31	ENSGT00940000157151 #32	ENSGT00940000159638 #33	ENSGT00940000153446.a.b	ENSGT00940000160209 #34	ENSGT00940000158079 #35
Rabbit	DUPLICATION
Rabbit	MODERN SPECIES	4	SYTL1 (ENSOCUG00000002371)	MAP3K6 (ENSOCUG00000002379)	ENSOCUG00000007587	GPR3 (ENSOCUG00000027272)	WASF2 (ENSOCUG00000002394)	AHDC1 (ENSOCUG00000008914)	FGR (ENSOCUG00000008922) #7	FAM76A (ENSOCUG00000014830) #8	PPP1R8 (ENSOCUG00000013594) #10	SMPDL3B (ENSOCUG00000012589) #13	EYA3 (ENSOCUG00000008020) #15	PTAFR (ENSOCUG00000017831) #16	ENSOCUG00000017932 #18	SESN2 (ENSOCUG00000014896) #19	PHACTR4 (ENSOCUG00000027528) #21	ENSOCUG00000002346 #22	ENSOCUG00000002353	RAB42 (ENSOCUG00000003933) #23	TAF12 (ENSOCUG00000003935) #25	GMEB1 (ENSOCUG00000010893) #26	YTHDF2 (ENSOCUG00000010612) #27	OPRD1 (ENSOCUG00000001033) #28	ENSOCUG00000030120	EPB41 (ENSOCUG00000006641) #29	TMEM200B (ENSOCUG00000025757)	SRSF4 (ENSOCUG00000001837) #30	MECR (ENSOCUG00000012645) #31	PTPRU (ENSOCUG00000012661) #32	MATN1 (ENSOCUG00000008153) #33	SDC3 (ENSOCUG00000006838) #34	PUM1 (ENSOCUG00000008641) #35
Rabbit	MODERN SPECIES	19	ENSOCUG00000039664	ENSOCUG00000014903	ENSOCUG00000021190	ENSOCUG00000032894	NAA16 (ENSOCUG00000013024)	MTRF1 (ENSOCUG00000025207)	ENSOCUG00000014016	WBP4 (ENSOCUG00000004256)	ELF1 (ENSOCUG00000010580)	ENSOCUG00000036807	CNMD (ENSOCUG00000005852)	PCDH8 (ENSOCUG00000008197)	ENSOCUG00000034427	ENSOCUG00000006349	ENSOCUG00000026932	ENSOCUG00000023238 #22	ENSOCUG00000024464	PCDH17 (ENSOCUG00000005237)	ENSOCUG00000037923	DIAPH3 (ENSOCUG00000001719)	TDRD3 (ENSOCUG00000014261)	ENSOCUG00000030963	PCDH20 (ENSOCUG00000016877)	ENSOCUG00000022627	PCDH9 (ENSOCUG00000000774)	ENSOCUG00000024260	ENSOCUG00000030652	KLHL1 (ENSOCUG00000015164)	DACH1 (ENSOCUG00000002140)	MZT1 (ENSOCUG00000006654)	BORA (ENSOCUG00000006658)
Pika	MODERN SPECIES	639																RCC1 (ENSOPRG00000007072) #22	ENSOPRG00000007084 #24	ENSOPRG00000007095
Tree shrew	MODERN SPECIES	4275																ENSTBEG00000006787 #22