Murinae	ANCESTRAL SPECIES	2	ENSGT00940000157554 #7	ENSGT00940000160073 #8	ENSGT01000000214440.A.a.b.a #9	ENSGT00940000156115 #10	ENSGT00530000063770.c.a #11	ENSGT00390000010045 #12	ENSGT00950000183182.a.a #13	ENSGT01090000260093.b #14	ENSGT00950000182978.B #15	ENSGT01060000248589.D #16	ENSGT00390000012569.a #17	ENSGT00390000006264 #18	ENSGT00950000183168.B.a #19	ENSGT00390000003312 #20	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #23	ENSGT00940000162094 #24	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761 #27	ENSGT00940000157669 #28	ENSGT00860000135912	ENSGT00940000157833 #29	ENSGT00530000063698.b #30	ENSGT00940000156213 #31	ENSGT00940000156592 #32	ENSGT00940000157151 #33	ENSGT00940000159638 #34	ENSGT00940000153446.a.b #35	ENSGT00940000160209 #36
Mus	ANCESTRAL SPECIES	3	ENSGT00940000157554 #7	ENSGT00940000160073 #8	ENSGT01000000214440.A.a.b.a #9	ENSGT00940000156115 #10	ENSGT00530000063770.c.a #11	ENSGT00390000010045 #12	ENSGT00950000183182.a.a #13	ENSGT01090000260093.b #14	ENSGT00950000182978.B #15	ENSGT01060000248589.D #16	ENSGT00390000012569.a #17	ENSGT00390000006264 #18	ENSGT00950000183168.B.a #19	ENSGT00390000003312 #20	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #23	ENSGT00940000162094 #24	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761 #27	ENSGT00940000157669 #28	ENSGT00860000135912	ENSGT00940000157833 #29	ENSGT00530000063698.b #30	ENSGT00940000156213 #31	ENSGT00940000156592 #32	ENSGT00940000157151 #33	ENSGT00940000159638 #34	ENSGT00940000153446.a.b #35	ENSGT00940000160209 #36
Mus_A	ANCESTRAL SPECIES	3	ENSGT00940000157554 #7	ENSGT00940000160073 #8	ENSGT01000000214440.A.a.b.a #9	ENSGT00940000156115 #10	ENSGT00530000063770.c.a #11	ENSGT00390000010045 #12	ENSGT00950000183182.a.a #13	ENSGT01090000260093.b #14	ENSGT00950000182978.B #15	ENSGT01060000248589.D #16	ENSGT00390000012569.a #17	ENSGT00390000006264 #18	ENSGT00950000183168.B.a #19	ENSGT00390000003312 #20	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #23	ENSGT00940000162094 #24	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761 #27	ENSGT00940000157669 #28	ENSGT00860000135912	ENSGT00940000157833 #29	ENSGT00530000063698.b #30	ENSGT00940000156213 #31	ENSGT00940000156592 #32	ENSGT00940000157151 #33	ENSGT00940000159638 #34	ENSGT00940000153446.a.b #35	ENSGT00940000160209 #36
Mus_B	ANCESTRAL SPECIES	5	ENSGT00940000157554 #7	ENSGT00940000160073 #8	ENSGT01000000214440.A.a.b.a #9	ENSGT00940000156115 #10	ENSGT00530000063770.c.a #11	ENSGT00390000010045 #12	ENSGT00950000183182.a.a #13	ENSGT01090000260093.b #14	ENSGT00950000182978.B #15	ENSGT01060000248589.D #16	ENSGT00390000012569.a #17	ENSGT00390000006264 #18	ENSGT00950000183168.B.a #19	ENSGT00390000003312 #20	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #23	ENSGT00940000162094 #24	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761 #27	ENSGT00940000157669 #28	ENSGT00860000135912	ENSGT00940000157833 #29	ENSGT00530000063698.b #30	ENSGT00940000156213 #31	ENSGT00940000156592 #32	ENSGT00940000157151 #33	ENSGT00940000159638 #34	ENSGT00940000153446.a.b #35	ENSGT00940000160209 #36
Mouse	MODERN SPECIES	13	Fgr (ENSMUSG00000028874) #7	Fam76a (ENSMUSG00000028878) #8	Stx12 (ENSMUSG00000028879) #9	Ppp1r8 (ENSMUSG00000028882) #10	Themis2 (ENSMUSG00000037731) #11	Rpa2 (ENSMUSG00000028884) #12	Smpdl3b (ENSMUSG00000028885) #13	Xkr8 (ENSMUSG00000037752) #14	Eya3 (ENSMUSG00000028886) #15	Ptafr (ENSMUSG00000056529) #16	Dnajc8 (ENSMUSG00000054405) #17	Atpif1 (ENSMUSG00000054428) #18	Sesn2 (ENSMUSG00000028893) #19	Med18 (ENSMUSG00000066042) #20	Phactr4 (ENSMUSG00000066043) #21	Rcc1 (ENSMUSG00000028896) #22	Trnau1ap (ENSMUSG00000028898) #23	Rab42 (ENSMUSG00000089687) #24	Taf12 (ENSMUSG00000028899) #25	Gmeb1 (ENSMUSG00000028901) #26	Ythdf2 (ENSMUSG00000040025) #27	Oprd1 (ENSMUSG00000050511) #28	Epb41 (ENSMUSG00000028906) #29	Tmem200b (ENSMUSG00000070720) #30	Srsf4 (ENSMUSG00000028911) #31	Mecr (ENSMUSG00000028910) #32	Ptpru (ENSMUSG00000028909) #33	Matn1 (ENSMUSG00000040533) #34	Laptm5 (ENSMUSG00000028581) #35	Sdc3 (ENSMUSG00000025743) #36	Pum1 (ENSMUSG00000028580) #37
Mus_C	ANCESTRAL SPECIES	2	ENSGT00940000157554 #7	ENSGT00940000160073.g #8	ENSGT01000000214440.A.a.b.a #9	ENSGT00940000156115 #10	ENSGT00530000063770.c.a #11	ENSGT00390000010045 #12	ENSGT00950000183182.a.a #13	ENSGT01090000260093.b #14	ENSGT00950000182978.B #15	ENSGT01060000248589.D #16	ENSGT00390000012569.a #17	ENSGT00390000006264 #18	ENSGT00950000183168.B.a #19	ENSGT00390000003312 #20	ENSGT00940000157582 #21	ENSGT00940000155543 #22	ENSGT00940000156139 #23	ENSGT00940000162094 #24	ENSGT00390000002144 #25	ENSGT00410000025596.a.b #26	ENSGT00940000156761 #27	ENSGT00940000157669 #28	ENSGT00860000135912	ENSGT00940000157833 #29	ENSGT00530000063698.b #30	ENSGT00940000156213 #31	ENSGT00940000156592 #32	ENSGT00940000157151 #33	ENSGT00940000159638 #34	ENSGT00940000153446.a.b #35	ENSGT00940000160209 #36
Steppe mouse	MODERN SPECIES	2797				Themis2 (ENSMSIG00000008497) #11	Rpa2 (ENSMSIG00000008505) #12	Smpdl3b (ENSMSIG00000008523) #13	Eya3 (ENSMSIG00000008546) #15	Xkr8 (ENSMSIG00000008821) #14	Ptafr (ENSMSIG00000008840) #16	Dnajc8 (ENSMSIG00000008847) #17	ENSMSIG00000009011	Atpif1 (ENSMSIG00000009020) #18	Sesn2 (ENSMSIG00000009040) #19	Med18 (ENSMSIG00000009082) #20	Phactr4 (ENSMSIG00000009106) #21	Rcc1 (ENSMSIG00000009244) #22	ENSMSIG00000009341 #23	Rab42 (ENSMSIG00000009484) #24	Taf12 (ENSMSIG00000009505) #25	Gmeb1 (ENSMSIG00000009569) #26	ENSMSIG00000009595	ENSMSIG00000009602 #27	Oprd1 (ENSMSIG00000009620) #28	Epb41 (ENSMSIG00000009639) #29	ENSMSIG00000012064	Tmem200b (ENSMSIG00000012073) #30
spretus	MODERN SPECIES	13	Fgr (MGP_SPRETEiJ_G0027560) #7	Fam76a (MGP_SPRETEiJ_G0027559) #8	Stx12 (MGP_SPRETEiJ_G0027558) #9	Ppp1r8 (MGP_SPRETEiJ_G0027557) #10	Themis2 (MGP_SPRETEiJ_G0027556) #11	Rpa2 (MGP_SPRETEiJ_G0027555) #12	Smpdl3b (MGP_SPRETEiJ_G0027554) #13	Xkr8 (MGP_SPRETEiJ_G0027553) #14	Eya3 (MGP_SPRETEiJ_G0027552) #15	Ptafr (MGP_SPRETEiJ_G0027551) #16	Dnajc8 (MGP_SPRETEiJ_G0027550) #17	Atpif1 (MGP_SPRETEiJ_G0027549) #18	Sesn2 (MGP_SPRETEiJ_G0027548) #19	Med18 (MGP_SPRETEiJ_G0027547) #20	Phactr4 (MGP_SPRETEiJ_G0027546) #21	Rcc1 (MGP_SPRETEiJ_G0027545) #22	Trnau1ap (MGP_SPRETEiJ_G0027544) #23	Rab42 (MGP_SPRETEiJ_G0027543) #24	Taf12 (MGP_SPRETEiJ_G0027542) #25	Gmeb1 (MGP_SPRETEiJ_G0027541) #26	MGP_SPRETEiJ_G0027540 #27	Oprd1 (MGP_SPRETEiJ_G0027539) #28	MGP_SPRETEiJ_G0027538	Epb41 (MGP_SPRETEiJ_G0027537) #29	Tmem200b (MGP_SPRETEiJ_G0027536) #30	Srsf4 (MGP_SPRETEiJ_G0027535) #31	MGP_SPRETEiJ_G0027534 #32	Ptpru (MGP_SPRETEiJ_G0027533) #33	Matn1 (MGP_SPRETEiJ_G0027532) #34	Laptm5 (MGP_SPRETEiJ_G0027531) #35	Sdc3 (MGP_SPRETEiJ_G0027530) #36
Ryukyu mouse	MODERN SPECIES	13	Fgr (MGP_CAROLIEiJ_G0026579) #7	Fam76a (MGP_CAROLIEiJ_G0026578) #8	Stx12 (MGP_CAROLIEiJ_G0026577) #9	Ppp1r8 (MGP_CAROLIEiJ_G0026576) #10	Themis2 (MGP_CAROLIEiJ_G0026575) #11	Rpa2 (MGP_CAROLIEiJ_G0026574) #12	Smpdl3b (MGP_CAROLIEiJ_G0026573) #13	Xkr8 (MGP_CAROLIEiJ_G0026572) #14	Eya3 (MGP_CAROLIEiJ_G0026571) #15	Ptafr (MGP_CAROLIEiJ_G0026570) #16	MGP_CAROLIEiJ_G0026569 #17	Atpif1 (MGP_CAROLIEiJ_G0026568) #18	Sesn2 (MGP_CAROLIEiJ_G0026567) #19	Med18 (MGP_CAROLIEiJ_G0026566) #20	Phactr4 (MGP_CAROLIEiJ_G0026565) #21	Rcc1 (MGP_CAROLIEiJ_G0026564) #22	Trnau1ap (MGP_CAROLIEiJ_G0026563) #23	Gmeb1 (MGP_CAROLIEiJ_G0026561) #26	Oprd1 (MGP_CAROLIEiJ_G0026559) #28	MGP_CAROLIEiJ_G0026558	Epb41 (MGP_CAROLIEiJ_G0026557) #29	Tmem200b (MGP_CAROLIEiJ_G0026556) #30	Srsf4 (MGP_CAROLIEiJ_G0026555) #31	Mecr (MGP_CAROLIEiJ_G0026554) #32	Ptpru (MGP_CAROLIEiJ_G0026553) #33	Matn1 (MGP_CAROLIEiJ_G0026552) #34	Laptm5 (MGP_CAROLIEiJ_G0026551) #35	Sdc3 (MGP_CAROLIEiJ_G0026550) #36	Pum1 (MGP_CAROLIEiJ_G0026549) #37	Nkain1 (MGP_CAROLIEiJ_G0026548)	Snrnp40 (MGP_CAROLIEiJ_G0026547)
Shrew mouse	MODERN SPECIES	19	Fgr (MGP_PahariEiJ_G0028912) #7	Fam76a (MGP_PahariEiJ_G0028911) #8	MGP_PahariEiJ_G0028910 #9	Ppp1r8 (MGP_PahariEiJ_G0028909) #10	Themis2 (MGP_PahariEiJ_G0028908) #11	Rpa2 (MGP_PahariEiJ_G0028907) #12	Smpdl3b (MGP_PahariEiJ_G0028906) #13	Xkr8 (MGP_PahariEiJ_G0028905) #14	Eya3 (MGP_PahariEiJ_G0028904) #15	Ptafr (MGP_PahariEiJ_G0028903) #16	MGP_PahariEiJ_G0028902 #17	Atpif1 (MGP_PahariEiJ_G0028901) #18	Sesn2 (MGP_PahariEiJ_G0028900) #19	Med18 (MGP_PahariEiJ_G0028899) #20	Phactr4 (MGP_PahariEiJ_G0028898) #21	Rcc1 (MGP_PahariEiJ_G0028897) #22	Trnau1ap (MGP_PahariEiJ_G0028896) #23	Rab42 (MGP_PahariEiJ_G0028895) #24	Taf12 (MGP_PahariEiJ_G0028894) #25	Gmeb1 (MGP_PahariEiJ_G0028893) #26	Ythdf2 (MGP_PahariEiJ_G0028892) #27	Oprd1 (MGP_PahariEiJ_G0028891) #28	MGP_PahariEiJ_G0028890	Epb41 (MGP_PahariEiJ_G0028889) #29	Tmem200b (MGP_PahariEiJ_G0028888) #30	Srsf4 (MGP_PahariEiJ_G0028887) #31	Mecr (MGP_PahariEiJ_G0028886) #32	Ptpru (MGP_PahariEiJ_G0028885) #33	Matn1 (MGP_PahariEiJ_G0028884) #34	Laptm5 (MGP_PahariEiJ_G0028883) #35	Sdc3 (MGP_PahariEiJ_G0028882) #36
Rat	MODERN SPECIES	15	Fam76a (ENSRNOG00000011254) #8	Stx12 (ENSRNOG00000011804) #9	Ppp1r8 (ENSRNOG00000059550) #10	Themis2 (ENSRNOG00000012965) #11	Rpa2 (ENSRNOG00000013005) #12	Smpdl3b (ENSRNOG00000042326) #13	Xkr8 (ENSRNOG00000024312) #14	Eya3 (ENSRNOG00000010396) #15	Ptafr (ENSRNOG00000013231) #16	Dnajc8 (ENSRNOG00000013255) #17	Atp5if1 (ENSRNOG00000013300) #18	Sesn2 (ENSRNOG00000042785) #19	Med18 (ENSRNOG00000067073) #20	LOC120102993 (ENSRNOG00000031506)	Phactr4 (ENSRNOG00000046922) #21	Rcc1 (ENSRNOG00000050106) #22	Trnau1ap (ENSRNOG00000055344) #23	Rab42 (ENSRNOG00000063150) #24	Taf12 (ENSRNOG00000048288) #25	Gmeb1 (ENSRNOG00000010910) #26	Ythdf2 (ENSRNOG00000010892) #27	Oprd1 (ENSRNOG00000010531) #28	Epb41 (ENSRNOG00000010037) #29	Tmem200b (ENSRNOG00000065288) #30	Srsf4 (ENSRNOG00000010007) #31	Mecr (ENSRNOG00000028047) #32	Ptpru (ENSRNOG00000013515) #33	Matn1 (ENSRNOG00000010932) #34	Laptm5 (ENSRNOG00000011054) #35	Sdc3 (ENSRNOG00000011927) #36	Pum1 (ENSRNOG00000011709) #37