Laurasiatheria	ANCESTRAL SPECIES	7	ENSGT00390000011034 #7	ENSGT00950000182836.b.b.b.b #9	ENSGT01030000234985	ENSGT00880000138034 #10	ENSGT00940000155208 #11	ENSGT00940000160810 #12	ENSGT00940000155089 #13	ENSGT00940000162065 #14	ENSGT00390000013943 #15	ENSGT01030000234639.A.a #16	ENSGT00940000153167.A.a #17	ENSGT00390000006394 #18	ENSGT00550000074878 #19	ENSGT01030000234626.B #20	ENSGT00390000013931.a.b.b #21	ENSGT00390000011877 #22	ENSGT00530000063558.B #23	ENSGT00940000157993 #24	ENSGT00390000004172 #25	ENSGT01090000260082.d.b #26	ENSGT00940000160610 #27	ENSGT00940000154531 #28	ENSGT00390000007183 #29	ENSGT00940000155913 #30	ENSGT00390000004028 #31	ENSGT00390000003560 #32	ENSGT00940000160715 #33	ENSGT00940000179662	ENSGT00940000156557 #34	ENSGT00940000156483 #35	ENSGT00390000008642 #37
Laurasiatheria_a	ANCESTRAL SPECIES	7	ENSGT00950000182836.b.b.b.b #9	ENSGT01030000234985	ENSGT00880000138034 #10	ENSGT00940000155208 #11	ENSGT00940000160810 #12	ENSGT00940000155089 #13	ENSGT00940000162065 #14	ENSGT00390000013943 #15	ENSGT01030000234639.A.a #16	ENSGT00940000153167.A.a #17	ENSGT00390000006394 #18	ENSGT00550000074878 #19	ENSGT01030000234626.B #20	ENSGT00390000013931.a.b.b #21	ENSGT00390000013931.a.a.b ##21	ENSGT00390000011877 #22	ENSGT00530000063558.B #23	ENSGT00940000157993 #24	ENSGT00390000004172 #25	ENSGT01090000260082.d.b #26	ENSGT00940000160610 #27	ENSGT00940000154531 #28	ENSGT00390000007183 #29	ENSGT00940000155913 #30	ENSGT00390000004028 #31	ENSGT00390000003560 #32	ENSGT00940000160715 #33	ENSGT00940000179662	ENSGT00940000156557 #34	ENSGT00940000156483 #35	ENSGT00390000008642 #37
Artiodactyla	ANCESTRAL SPECIES	19	ENSGT00950000182836.b.b.b.b #9	ENSGT01030000234985	ENSGT00880000138034 #10	ENSGT00940000155208 #11	ENSGT00940000160810 #12	ENSGT00940000155089 #13	ENSGT00940000162065 #14	ENSGT00390000013943 #15	ENSGT01030000234639.A.a #16	ENSGT00940000153167.A.a #17	ENSGT00390000006394 #18	ENSGT00550000074878 #19	ENSGT01030000234626.B #20	ENSGT00390000013931.a.b.b #21	ENSGT00390000013931.a.a.b ##21	ENSGT00390000011877 #22	ENSGT00530000063558.B #23	ENSGT00940000157993 #24	ENSGT00390000004172 #25	ENSGT01090000260082.d.b #26	ENSGT00940000160610 #27	ENSGT00940000154531 #28	ENSGT00390000007183 #29	ENSGT00940000155913 #30	ENSGT00390000004028 #31	ENSGT00390000003560 #32	ENSGT00940000160715 #33	ENSGT00940000156557 #34	ENSGT00940000156483 #35	ENSGT00390000008642 #37	ENSGT00940000163242.b
Suina	ANCESTRAL SPECIES	18	ENSGT00940000157330	ENSGT00390000011034 #7	ENSGT00950000182836.b.b.b.b #9	ENSGT00880000138034 #10	ENSGT00940000155208 #11	ENSGT00940000160810 #12	ENSGT00940000155089 #13	ENSGT00940000162065 #14	ENSGT00390000013943 #15	ENSGT01030000234639.A.a #16	ENSGT00940000153167.A.a #17	ENSGT00390000006394 #18	ENSGT00550000074878 #19	ENSGT01030000234626.B #20	ENSGT00390000013931.a.b.b #21	ENSGT00390000011877 #22	ENSGT00530000063558.B #23	ENSGT00940000157993 #24	ENSGT00390000004172 #25	ENSGT01090000260082.d.b #26	ENSGT00940000160610 #27	ENSGT00940000154531 #28	ENSGT00390000007183 #29	ENSGT00940000155913 #30	ENSGT00390000004028 #31	ENSGT00390000003560 #32	ENSGT00940000160715 #33	ENSGT00940000156557 #34	ENSGT00940000156483 #35	ENSGT00390000008642 #37	ENSGT00940000155634
Pig	MODERN SPECIES		PRKN (ENSSSCG00000004032) #7	ENSSSCG00000053549 #8	AGPAT4 (ENSSSCG00000004033) #9	MAP3K4 (ENSSSCG00000004037) #10	PLG (ENSSSCG00000004038) #11	SLC22A3 (ENSSSCG00000004039) #12	SLC22A2 (ENSSSCG00000004040) #13	SLC22A1 (ENSSSCG00000004041) #14	IGF2R (ENSSSCG00000004044) #15	MAS1 (ENSSSCG00000059431) #16	PNLDC1 (ENSSSCG00000004046) #17	MRPL18 (ENSSSCG00000004047) #18	TCP1 (ENSSSCG00000004048) #19	ACAT2 (ENSSSCG00000004049) #20	WTAP (ENSSSCG00000004050) #21	SOD2 (ENSSSCG00000040317) #22	FNDC1 (ENSSSCG00000004052) #23	TAGAP (ENSSSCG00000004053) #24	RSPH3 (ENSSSCG00000004055) #25	EZR (ENSSSCG00000004058) #26	SYTL3 (ENSSSCG00000004057) #27	DYNLT1 (ENSSSCG00000033107) #28	TMEM181 (ENSSSCG00000024876) #29	ENSSSCG00000031776 #30	GTF2H5 (ENSSSCG00000024019) #31	SERAC1 (ENSSSCG00000012314) #32	SYNJ2 (ENSSSCG00000012315) #33	SNX9 (ENSSSCG00000030535) #34	ZDHHC14 (ENSSSCG00000035027) #35	ENSSSCG00000038527 #36	TMEM242 (ENSSSCG00000060508) #37
Chacoan peccary	MODERN SPECIES	58	ENSCWAG00000002429 #7	AGPAT4 (ENSCWAG00000002443) #9	MAP3K4 (ENSCWAG00000002506) #10	ENSCWAG00000002821 #11	SLC22A3 (ENSCWAG00000002861) #12	SLC22A2 (ENSCWAG00000002880) #13	SLC22A1 (ENSCWAG00000002901) #14	IGF2R (ENSCWAG00000002925) #15	MAS1 (ENSCWAG00000002975) #16	ENSCWAG00000002985	PNLDC1 (ENSCWAG00000003002) #17	MRPL18 (ENSCWAG00000003059) #18	TCP1 (ENSCWAG00000003074) #19	ACAT2 (ENSCWAG00000003116) #20	WTAP (ENSCWAG00000003142) #21	SOD2 (ENSCWAG00000003162) #22	FNDC1 (ENSCWAG00000003188) #23	ENSCWAG00000003211 #24	RSPH3 (ENSCWAG00000003227) #25	EZR (ENSCWAG00000003256) #26	SYTL3 (ENSCWAG00000003293) #27	DYNLT1 (ENSCWAG00000003343) #28	TMEM181 (ENSCWAG00000003377) #29	TULP4 (ENSCWAG00000003534) #30	GTF2H5 (ENSCWAG00000003578) #31	SERAC1 (ENSCWAG00000003601) #32	SYNJ2 (ENSCWAG00000003712) #33	SNX9 (ENSCWAG00000003804) #34	ZDHHC14 (ENSCWAG00000003840) #35	TMEM242 (ENSCWAG00000003899) #37	ARID1B (ENSCWAG00000004015)
Artiodactyla_a	ANCESTRAL SPECIES	21	ENSGT00950000182836.b.b.b.b #9	ENSGT01030000234985	ENSGT00880000138034 #10	ENSGT00940000155208 #11	ENSGT00940000160810 #12	ENSGT00940000155089 #13	ENSGT00940000162065 #14	ENSGT00390000013943 #15	ENSGT01030000234639.A.a #16	ENSGT00940000153167.A.a #17	ENSGT00390000006394 #18	ENSGT00550000074878 #19	ENSGT01030000234626.B #20	ENSGT00390000013931.a.b.b #21	ENSGT00390000013931.a.a.b ##21	ENSGT00390000011877 #22	ENSGT00530000063558.B #23	ENSGT00940000157993 #24	ENSGT00390000004172 #25	ENSGT01090000260082.d.b #26	ENSGT00940000160610 #27	ENSGT00940000154531 #28	ENSGT00390000007183 #29	ENSGT00940000155913 #30	ENSGT00390000004028 #31	ENSGT00390000003560 #32	ENSGT00940000160715 #33	ENSGT00940000156557 #34	ENSGT00940000156483 #35	ENSGT00390000008642 #37	ENSGT00940000163242.b
Camelidae	ANCESTRAL SPECIES	37	ENSGT00940000157330	ENSGT00390000011034 #7	ENSGT00950000182836.b.b.b.b #9	ENSGT00880000138034 #10	ENSGT00940000155208 #11	ENSGT00940000160810 #12	ENSGT00940000155089 #13	ENSGT00940000162065 #14	ENSGT00390000013943 #15	ENSGT01030000234639.A.a #16	ENSGT00940000153167.A.a #17	ENSGT00390000006394 #18	ENSGT00550000074878 #19	ENSGT01030000234626.B #20	ENSGT00390000013931.a.b.b #21	ENSGT00390000011877 #22	ENSGT00530000063558.B #23	ENSGT00940000157993 #24	ENSGT00390000004172 #25	ENSGT01090000260082.d.b #26	ENSGT00940000160610 #27	ENSGT00940000154531 #28	ENSGT00390000007183 #29	ENSGT00940000155913 #30	ENSGT00390000004028 #31	ENSGT00390000003560 #32	ENSGT00940000160715 #33	ENSGT00940000156557 #34	ENSGT00940000156483 #35	ENSGT00390000008642 #37	ENSGT00940000155634
Alpaca	MODERN SPECIES	3586											ENSVPAG00000008213	MRPL18 (ENSVPAG00000008211) #18	TCP1 (ENSVPAG00000008209) #19	ACAT2 (ENSVPAG00000008207) #20	WTAP (ENSVPAG00000008205) #21	SOD2 (ENSVPAG00000008201) #22
Arabian camel	MODERN SPECIES	34	PACRG (ENSCDRG00005010327)	PRKN (ENSCDRG00005010399) #7	AGPAT4 (ENSCDRG00005011648) #9	MAP3K4 (ENSCDRG00005011806) #10	ENSCDRG00005013803 #11	SLC22A3 (ENSCDRG00005014054) #12	SLC22A2 (ENSCDRG00005014141) #13	SLC22A1 (ENSCDRG00005014227) #14	IGF2R (ENSCDRG00005014304) #15	MAS1 (ENSCDRG00005014532) #16	PNLDC1 (ENSCDRG00005014558) #17	MRPL18 (ENSCDRG00005014810) #18	TCP1 (ENSCDRG00005014875) #19	ACAT2 (ENSCDRG00005015012) #20	WTAP (ENSCDRG00005015081) #21	MnSOD (ENSCDRG00005015180) #22	FNDC1 (ENSCDRG00005015292) #23	TAGAP (ENSCDRG00005015381) #24	RSPH3 (ENSCDRG00005015431) #25	ENSCDRG00005015561 #26	SYTL3 (ENSCDRG00005015709) #27	ENSCDRG00005015822 #28	TMEM181 (ENSCDRG00005015875) #29	ENSCDRG00005016299 #30	GTF2H5 (ENSCDRG00005016408) #31	SERAC1 (ENSCDRG00005016470) #32	SYNJ2 (ENSCDRG00005016839) #33	SNX9 (ENSCDRG00005017884) #34	ZDHHC14 (ENSCDRG00005018018) #35	TMEM242 (ENSCDRG00005018146) #37	ARID1B (ENSCDRG00005018236)
Artiodactyla_b	ANCESTRAL SPECIES	18	ENSGT00950000182836.b.b.b.b #9	ENSGT01030000234985	ENSGT00880000138034 #10	ENSGT00940000155208 #11	ENSGT00940000160810 #12	ENSGT00940000155089 #13	ENSGT00940000162065 #14	ENSGT00390000013943 #15	ENSGT01030000234639.A.a #16	ENSGT00940000153167.A.a #17	ENSGT00390000006394 #18	ENSGT00550000074878 #19	ENSGT01030000234626.B #20	ENSGT00390000013931.a.b.b #21	ENSGT00390000013931.a.a.b ##21	ENSGT00390000011877 #22	ENSGT00530000063558.B #23	ENSGT00940000157993 #24	ENSGT00390000004172 #25	ENSGT01090000260082.d.b #26	ENSGT00940000160610 #27	ENSGT00940000154531 #28	ENSGT00390000007183 #29	ENSGT00940000155913 #30	ENSGT00390000004028 #31	ENSGT00390000003560 #32	ENSGT00940000160715 #33	ENSGT00940000156557 #34	ENSGT00940000156483 #35	ENSGT00390000008642 #37	ENSGT00940000163242.b
Pecora	ANCESTRAL SPECIES	19	ENSGT00950000182836.b.b.b.b #9	ENSGT01030000234985	ENSGT00880000138034 #10	ENSGT00940000155208 #11	ENSGT00940000160810 #12	ENSGT00940000155089 #13	ENSGT00940000162065 #14	ENSGT00390000013943 #15	ENSGT01030000234639.A.a #16	ENSGT00940000153167.A.a #17	ENSGT00390000006394 #18	ENSGT00550000074878 #19	ENSGT01030000234626.B #20	ENSGT00390000013931.a.b.b #21	ENSGT00390000013931.a.a.b ##21	ENSGT00390000011877 #22	ENSGT00530000063558.B #23	ENSGT00940000157993 #24	ENSGT00390000004172 #25	ENSGT01090000260082.d.b #26	ENSGT00940000160610 #27	ENSGT00940000154531 #28	ENSGT00390000007183 #29	ENSGT00940000155913 #30	ENSGT00390000004028 #31	ENSGT00390000003560 #32	ENSGT00940000160715 #33	ENSGT00940000156557 #34	ENSGT00940000156483 #35	ENSGT00390000008642 #37	ENSGT00940000155634
Yarkand deer	MODERN SPECIES	18	PACRG (ENSCHYG00000025979)	PRKN (ENSCHYG00000025824) #7	AGPAT4 (ENSCHYG00000025772) #9	MAP3K4 (ENSCHYG00000025579) #10	ENSCHYG00000025465 #11	SLC22A3 (ENSCHYG00000025420) #12	SLC22A2 (ENSCHYG00000025351) #13	SLC22A1 (ENSCHYG00000025285) #14	IGF2R (ENSCHYG00000023202) #15	MAS1 (ENSCHYG00000022925) #16	PNLDC1 (ENSCHYG00000022800) #17	MRPL18 (ENSCHYG00000022773) #18	TCP1 (ENSCHYG00000022554) #19	ACAT2 (ENSCHYG00000022487) #20	WTAP (ENSCHYG00000022403) #21	ENSCHYG00000022090 #22	FNDC1 (ENSCHYG00000021187) #23	ENSCHYG00000021069	TAGAP (ENSCHYG00000020890) #24	RSPH3 (ENSCHYG00000020694) #25	ENSCHYG00000020511 #26	SYTL3 (ENSCHYG00000020333) #27	ENSCHYG00000020272 #28	ENSCHYG00000020249	TMEM181 (ENSCHYG00000018947) #29	ENSCHYG00000018828	ENSCHYG00000018795	TULP4 (ENSCHYG00000018070) #30	GTF2H5 (ENSCHYG00000017957) #31	SERAC1 (ENSCHYG00000017067) #32	SYNJ2 (ENSCHYG00000016600) #33
Percora_a	ANCESTRAL SPECIES	21	ENSGT00950000182836.b.b.b.b #9	ENSGT01030000234985	ENSGT00880000138034 #10	ENSGT00940000155208 #11	ENSGT00940000160810 #12	ENSGT00940000155089 #13	ENSGT00940000162065 #14	ENSGT00390000013943 #15	ENSGT01030000234639.A.a #16	ENSGT00940000153167.A.a #17	ENSGT00390000006394 #18	ENSGT00550000074878 #19	ENSGT01030000234626.B #20	ENSGT00390000013931.a.b.b #21	ENSGT00390000013931.a.a.b ##21	ENSGT00390000011877 #22	ENSGT00530000063558.B #23	ENSGT00940000157993.k #24	ENSGT00390000004172 #25	ENSGT01090000260082.d.b #26	ENSGT00940000160610 #27	ENSGT00940000154531 #28	ENSGT00390000007183 #29	ENSGT00940000155913 #30	ENSGT00390000004028 #31	ENSGT00390000003560 #32	ENSGT00940000160715 #33	ENSGT00940000156557 #34	ENSGT00940000156483 #35	ENSGT00390000008642 #37	ENSGT00940000155634
Bovidae	ANCESTRAL SPECIES	21	ENSGT00950000182836.b.b.b.b #9	ENSGT01030000234985	ENSGT00880000138034 #10	ENSGT00940000155208 #11	ENSGT00940000160810 #12	ENSGT00940000155089 #13	ENSGT00940000162065 #14	ENSGT00390000013943 #15	ENSGT01030000234639.A.a #16	ENSGT00940000153167.A.a #17	ENSGT00390000006394 #18	ENSGT00550000074878 #19	ENSGT01030000234626.B #20	ENSGT00390000013931.a.b.b #21	ENSGT00390000013931.a.a.b ##21	ENSGT00390000011877 #22	ENSGT00530000063558.B #23	ENSGT00940000157993.l #24	ENSGT00940000157993.k #24	ENSGT00390000004172 #25	ENSGT01090000260082.d.b #26	ENSGT00940000160610 #27	ENSGT00940000154531 #28	ENSGT00390000007183 #29	ENSGT00940000155913 #30	ENSGT00390000004028 #31	ENSGT00390000003560 #32	ENSGT00940000160715 #33	ENSGT01030000234597.a.a.i.a.d	ENSGT00940000156557 #34	ENSGT00940000156483 #35
Bovinae	ANCESTRAL SPECIES	35	ENSGT00950000182836.b.b.b.b #9	ENSGT01030000234985	ENSGT00880000138034 #10	ENSGT00940000155208 #11	ENSGT00940000160810 #12	ENSGT00940000155089 #13	ENSGT00940000162065 #14	ENSGT00390000013943 #15	ENSGT01030000234639.A.a #16	ENSGT00940000153167.A.a #17	ENSGT00390000006394 #18	ENSGT00550000074878 #19	ENSGT01030000234626.B #20	ENSGT00390000013931.a.b.b #21	ENSGT00390000013931.a.a.b ##21	ENSGT00390000011877 #22	ENSGT00390000006208.a.f	ENSGT01040000241176	ENSGT00530000063558.B #23	ENSGT00940000157993.l #24	ENSGT00940000157993.k #24	ENSGT00390000004172 #25	ENSGT01090000260082.d.b #26	ENSGT00940000160610 #27	ENSGT00940000154531 #28	ENSGT00390000007183 #29	ENSGT00940000155913 #30	ENSGT00390000004028 #31	ENSGT00390000003560 #32	ENSGT00940000160715 #33	ENSGT01030000234597.a.a.i.a.d
Bos	ANCESTRAL SPECIES	19	ENSGT00950000182836.b.b.b.b #9	ENSGT01030000234985	ENSGT00880000138034 #10	ENSGT00940000155208 #11	ENSGT00940000160810 #12	ENSGT00940000155089 #13	ENSGT00940000162065 #14	ENSGT00390000013943 #15	ENSGT01030000234639.A.a #16	ENSGT00940000153167.A.a #17	ENSGT00390000006394 #18	ENSGT00550000074878 #19	ENSGT01030000234626.B #20	ENSGT00390000013931.a.b.b #21	ENSGT00390000013931.a.a.b ##21	ENSGT00390000011877 #22	ENSGT00390000006208.a.f	ENSGT01040000241176	ENSGT00530000063558.B #23	ENSGT00940000157993.l #24	ENSGT00940000157993.k #24	ENSGT00390000004172 #25	ENSGT01090000260082.d.b #26	ENSGT00940000160610 #27	ENSGT00940000154531.j #28	ENSGT00390000007183 #29	ENSGT00940000155913 #30	ENSGT00390000004028 #31	ENSGT00390000003560 #32	ENSGT00940000160715 #33	ENSGT01030000234597.a.a.i.a.d
Bos_a	ANCESTRAL SPECIES	54	ENSGT00950000182836.b.b.b.b #9	ENSGT01030000234985	ENSGT00880000138034 #10	ENSGT00940000155208 #11	ENSGT00940000160810 #12	ENSGT00940000155089 #13	ENSGT00940000162065 #14	ENSGT00390000013943 #15	ENSGT01030000234639.A.a #16	ENSGT00940000153167.A.a #17	ENSGT00390000006394 #18	ENSGT00550000074878 #19	ENSGT01030000234626.B #20	ENSGT00390000013931.a.b.b #21	ENSGT00390000013931.a.a.b ##21	ENSGT00390000011877 #22	ENSGT00530000063558.B #23	ENSGT00940000157993.l #24	ENSGT00940000157993.k #24	ENSGT00390000004172 #25	ENSGT01090000260082.d.b #26	ENSGT00940000160610 #27	ENSGT00940000154531.j #28	ENSGT00390000007183 #29	ENSGT00940000155913 #30	ENSGT00390000004028 #31	ENSGT00390000003560 #32	ENSGT00940000160715 #33	ENSGT01030000234597.a.a.i.a.d	ENSGT00940000156557 #34	ENSGT01030000235099
Domestic yak	MODERN SPECIES	1	MAP3K4 (ENSBGRG00000017036) #10	ENSBGRG00000020575	ENSBGRG00000020646 #11	SLC22A3 (ENSBGRG00000020975) #12	SLC22A2 (ENSBGRG00000021163) #13	SLC22A1 (ENSBGRG00000021387) #14	IGF2R (ENSBGRG00000021970) #15	ENSBGRG00000026486	MAS1 (ENSBGRG00000026489) #16	PNLDC1 (ENSBGRG00000026494) #17	MRPL18 (ENSBGRG00000026525) #18	TCP1 (ENSBGRG00000026527) #19	ENSBGRG00000026550 #20	ENSBGRG00000026557 #21	ENSBGRG00000026563 ##21	ENSBGRG00000026571 #22	FNDC1 (ENSBGRG00000026585) #23	TAGAP (ENSBGRG00000026597) #24	RSPH3 (ENSBGRG00000026600) #25	EZR (ENSBGRG00000026603) #26	SYTL3 (ENSBGRG00000026617) #27	DYNLT1 (ENSBGRG00000026623) #28	TMEM181 (ENSBGRG00000026630) #29	TULP4 (ENSBGRG00000026640) #30	ENSBGRG00000026645 #31	SERAC1 (ENSBGRG00000026663) #32	SYNJ2 (ENSBGRG00000026679) #33	SNX9 (ENSBGRG00000026688) #34	ENSBGRG00000026695	ZDHHC14 (ENSBGRG00000026696) #35	ENSBGRG00000026701 #37
Wild yak	MODERN SPECIES	1168		ENSBMUG00000003343 #9	ENSBMUG00000003268	MAP3K4 (ENSBMUG00000003212) #10	ENSBMUG00000003160 #11	SLC22A3 (ENSBMUG00000003131) #12	SLC22A2 (ENSBMUG00000003107) #13	SLC22A1 (ENSBMUG00000003078) #14	IGF2R (ENSBMUG00000003027) #15	MAS1 (ENSBMUG00000002956) #16	PNLDC1 (ENSBMUG00000002939) #17	MRPL18 (ENSBMUG00000002874) #18	TCP1 (ENSBMUG00000002835) #19	ACAT2 (ENSBMUG00000002762) #20	ENSBMUG00000002743 #21	SOD2 (ENSBMUG00000002696) #22	ENSBMUG00000002680	ENSBMUG00000002677	FNDC1 (ENSBMUG00000002609) #23	ENSBMUG00000002323 #24	ENSBMUG00000002298 #24	RSPH3 (ENSBMUG00000002272) #25	EZR (ENSBMUG00000002231) #26	SYTL3 (ENSBMUG00000002194) #27	ENSBMUG00000002110 #28	TMEM181 (ENSBMUG00000002081) #29	ENSBMUG00000002042 #30	GTF2H5 (ENSBMUG00000002023) #31	SERAC1 (ENSBMUG00000001963) #32	SYNJ2 (ENSBMUG00000001791) #33	ENSBMUG00000001758
Bos_b	ANCESTRAL SPECIES	42	ENSGT00390000011034 #7	ENSGT00950000182836.b.b.b.b #9	ENSGT01030000234985	ENSGT00880000138034 #10	ENSGT00940000155208 #11	ENSGT00940000160810 #12	ENSGT00940000155089 #13	ENSGT00940000162065 #14	ENSGT00390000013943 #15	ENSGT01030000234639.A.a #16	ENSGT00940000153167.A.a #17	ENSGT00390000006394 #18	ENSGT00550000074878 #19	ENSGT01030000234626.B #20	ENSGT00390000013931.a.b.b #21	ENSGT00390000011877 #22	ENSGT00390000006208.a.f	ENSGT01040000241176	ENSGT00530000063558.B #23	ENSGT00940000157993.k #24	ENSGT00390000004172 #25	ENSGT01090000260082.d.b #26	ENSGT00940000160610 #27	ENSGT00940000154531.j #28	ENSGT00390000007183 #29	ENSGT00940000155913 #30	ENSGT00390000004028 #31	ENSGT00390000003560 #32	ENSGT00940000160715 #33	ENSGT01100000263480.a.a.b.b.b.a.a.a.a.b.b.a.a.a.a.b.a.b.a.a.b	ENSGT01030000234597.a.a.i.a.d
Hybrid Bos Indicus	MODERN SPECIES	28	AGPAT4 (ENSBIXG00005014474) #9	ENSBIXG00005006130	MAP3K4 (ENSBIXG00005002084) #10	ENSBIXG00005007542 #11	SLC22A3 (ENSBIXG00005014926) #12	SLC22A2 (ENSBIXG00005006381) #13	SLC22A1 (ENSBIXG00005015034) #14	IGF2R (ENSBIXG00005015279) #15	MAS1 (ENSBIXG00005015332) #16	PNLDC1 (ENSBIXG00005015403) #17	MRPL18 (ENSBIXG00005015451) #18	TCP1 (ENSBIXG00005015526) #19	ENSBIXG00005006136	ENSBIXG00005015570 #20	WTAP (ENSBIXG00005015616) #21	ENSBIXG00005005505 #22	ENSBIXG00005006566	FNDC1 (ENSBIXG00005002485) #23	TAGAP (ENSBIXG00005015864) #24	RSPH3 (ENSBIXG00005002509) #25	EZR (ENSBIXG00005002517) #26	SYTL3 (ENSBIXG00005015982) #27	DYNLT1 (ENSBIXG00005002539) #28	TMEM181 (ENSBIXG00005016376) #29	TULP4 (ENSBIXG00005016689) #30	ENSBIXG00005016735	ENSBIXG00005016761 #31	SERAC1 (ENSBIXG00005017174) #32	ENSBIXG00005017210	SYNJ2 (ENSBIXG00005017312) #33	ENSBIXG00005017343
Cow	MODERN SPECIES	28	PRKN (ENSBTAG00000018996) #7	AGPAT4 (ENSBTAG00000007668) #9	ENSBTAG00000052236	MAP3K4 (ENSBTAG00000020079) #10	PLG (ENSBTAG00000001271) #11	SLC22A3 (ENSBTAG00000039080) #12	SLC22A2 (ENSBTAG00000009583) #13	SLC22A1 (ENSBTAG00000008540) #14	IGF2R (ENSBTAG00000002402) #15	MAS1 (ENSBTAG00000031724) #16	PNLDC1 (ENSBTAG00000015166) #17	MRPL18 (ENSBTAG00000001289) #18	TCP1 (ENSBTAG00000002829) #19	ACAT2 (ENSBTAG00000002827) #20	WTAP (ENSBTAG00000007974) #21	SOD2 (ENSBTAG00000006523) #22	ENSBTAG00000052316	ENSBTAG00000048338	FNDC1 (ENSBTAG00000003938) #23	TAGAP (ENSBTAG00000031701) #24	RSPH3 (ENSBTAG00000005955) #25	EZR (ENSBTAG00000010347) #26	SYTL3 (ENSBTAG00000010334) #27	ENSBTAG00000004472 #28	TMEM181 (ENSBTAG00000010838) #29	ENSBTAG00000045898	TULP4 (ENSBTAG00000005083) #30	GTF2H5 (ENSBTAG00000008543) #31	SERAC1 (ENSBTAG00000011509) #32	SYNJ2 (ENSBTAG00000000817) #33	ENSBTAG00000048573
American bison	MODERN SPECIES	3071			ENSBBBG00000010920	MAP3K4 (ENSBBBG00000001982) #10	ENSBBBG00000011051 #11	SLC22A3 (ENSBBBG00000011059) #12	SLC22A2 (ENSBBBG00000011068) #13	SLC22A1 (ENSBBBG00000011081) #14	IGF2R (ENSBBBG00000011115) #15	MAS1 (ENSBBBG00000011119) #16	PNLDC1 (ENSBBBG00000011161) #17	MRPL18 (ENSBBBG00000011166) #18	TCP1 (ENSBBBG00000002025) #19	ENSBBBG00000011209 #20	ENSBBBG00000011243 #21	SOD2 (ENSBBBG00000011253) #22	ENSBBBG00000011260	ENSBBBG00000011265	FNDC1 (ENSBBBG00000002055) #23	ENSBBBG00000011303 #24	ENSBBBG00000002057 #24	RSPH3 (ENSBBBG00000011334) #25	EZR (ENSBBBG00000002067) #26	SYTL3 (ENSBBBG00000011406) #27	DYNLT1 (ENSBBBG00000011420) #28	TMEM181 (ENSBBBG00000011458) #29	TULP4 (ENSBBBG00000011517) #30	GTF2H5 (ENSBBBG00000011523) #31	SERAC1 (ENSBBBG00000011692) #32	SYNJ2 (ENSBBBG00000008492) #33	ENSBBBG00000011725
Caprinae	ANCESTRAL SPECIES		ENSGT00390000011034 #7	ENSGT00950000182836.b.b.b.b #9	ENSGT01030000234985	ENSGT00880000138034 #10	ENSGT00940000155208 #11	ENSGT00940000160810 #12	ENSGT00940000155089 #13	ENSGT00940000162065 #14	ENSGT00390000013943 #15	ENSGT01030000234639.A.a #16	ENSGT00940000153167.A.a #17	ENSGT00390000006394 #18	ENSGT00550000074878 #19	ENSGT01030000234626.B #20	ENSGT00390000013931.a.b.b.d #21	ENSGT00390000011877 #22	ENSGT00390000006208.a.f	ENSGT00390000013558.z	ENSGT00530000063558.B #23	ENSGT00940000157993.l #24	ENSGT00390000004172 #25	ENSGT01090000260082.d.b #26	ENSGT00940000160610 #27	ENSGT00940000154531 #28	ENSGT00390000007183 #29	ENSGT00940000155913 #30	ENSGT00390000004028 #31	ENSGT00390000003560 #32	ENSGT00940000160715 #33	ENSGT01030000234597.a.a.i.a.d	ENSGT00940000156557 #34
Rambouillet Sheep	MODERN SPECIES	24	PACRG (ENSOARG00020026098)	PRKN (ENSOARG00020026093) #7	AGPAT4 (ENSOARG00020026075) #9	MAP3K4 (ENSOARG00020025996) #10	ENSOARG00020025929 #11	SLC22A3 (ENSOARG00020025917) #12	SLC22A2 (ENSOARG00020025906) #13	SLC22A1 (ENSOARG00020025899) #14	IGF2R (ENSOARG00020007810) #15	MAS1 (ENSOARG00020006641) #16	PNLDC1 (ENSOARG00020006365) #17	MRPL18 (ENSOARG00020006305) #18	TCP1 (ENSOARG00020006218) #19	ENSOARG00020006176 #20	WTAP (ENSOARG00020006133) #21	SOD2 (ENSOARG00020006059) #22	ENSOARG00020006017	ENSOARG00020005992	TAGAP (ENSOARG00020005923) #24	RSPH3 (ENSOARG00020005842) #25	ENSOARG00020005804 #26	SYTL3 (ENSOARG00020005678) #27	DYNLT1 (ENSOARG00020005652) #28	TMEM181 (ENSOARG00020005095) #29	TULP4 (ENSOARG00020004840) #30	GTF2H5 (ENSOARG00020004781) #31	SERAC1 (ENSOARG00020004385) #32	SYNJ2 (ENSOARG00020004254) #33	RPS25 (ENSOARG00020004228)	SNX9 (ENSOARG00020003963) #34	ZDHHC14 (ENSOARG00020003801) #35
Goat	MODERN SPECIES	28	ENSCHIG00000020982 #7	AGPAT4 (ENSCHIG00000016729) #9	ENSCHIG00000024395	MAP3K4 (ENSCHIG00000009330) #10	ENSCHIG00000011198 #11	SLC22A3 (ENSCHIG00000021136) #12	SLC22A2 (ENSCHIG00000006824) #13	SLC22A1 (ENSCHIG00000014819) #14	IGF2R (ENSCHIG00000010830) #15	MAS1 (ENSCHIG00000012964) #16	PNLDC1 (ENSCHIG00000003141) #17	ENSCHIG00000023286 #18	TCP1 (ENSCHIG00000016503) #19	ENSCHIG00000017426 #20	ENSCHIG00000026430 #21	SOD2 (ENSCHIG00000009947) #22	ENSCHIG00000010882	ENSCHIG00000020625	FNDC1 (ENSCHIG00000023614) #23	TAGAP (ENSCHIG00000008817) #24	RSPH3 (ENSCHIG00000018819) #25	EZR (ENSCHIG00000017900) #26	SYTL3 (ENSCHIG00000016283) #27	DYNLT1 (ENSCHIG00000026680) #28	TMEM181 (ENSCHIG00000023369) #29	TULP4 (ENSCHIG00000003373) #30	GTF2H5 (ENSCHIG00000000966) #31	SERAC1 (ENSCHIG00000013202) #32	SYNJ2 (ENSCHIG00000011077) #33	ENSCHIG00000010027	SNX9 (ENSCHIG00000013873) #34
Siberian musk deer	DUPLICATION
Siberian musk deer	MODERN SPECIES	61	PRKN (ENSMMSG00000003365) #7	AGPAT4 (ENSMMSG00000003318) #9	MAP3K4 (ENSMMSG00000002913) #10	ENSMMSG00000002739	ENSMMSG00000002676 #11	SLC22A3 (ENSMMSG00000002642) #12	SLC22A2 (ENSMMSG00000002601) #13	SLC22A1 (ENSMMSG00000002522) #14	IGF2R (ENSMMSG00000002420) #15	MAS1 (ENSMMSG00000002388) #16	PNLDC1 (ENSMMSG00000002313) #17	MRPL18 (ENSMMSG00000002291) #18	TCP1 (ENSMMSG00000002241) #19	ENSMMSG00000002220 #20	WTAP (ENSMMSG00000002177) #21	ENSMMSG00000002137 #22	FNDC1 (ENSMMSG00000002110) #23	ENSMMSG00000002090	TAGAP (ENSMMSG00000002040) #24	RSPH3 (ENSMMSG00000002005) #25	EZR (ENSMMSG00000001963) #26	SYTL3 (ENSMMSG00000001907) #27	ENSMMSG00000001893 #28	TMEM181 (ENSMMSG00000001689) #29	TULP4 (ENSMMSG00000001543) #30	GTF2H5 (ENSMMSG00000001513) #31	SERAC1 (ENSMMSG00000001280) #32	SYNJ2 (ENSMMSG00000001120) #33	SNX9 (ENSMMSG00000001061) #34	ZDHHC14 (ENSMMSG00000001040) #35	TMEM242 (ENSMMSG00000001018) #37
Siberian musk deer	MODERN SPECIES	101	GRAMD2B (ENSMMSG00000004112)	ALDH7A1 (ENSMMSG00000004048)	ENSMMSG00000004037	TEX43 (ENSMMSG00000004028)	ENSMMSG00000004009	MARCHF3 (ENSMMSG00000003994)	C5orf63 (ENSMMSG00000003981)	MEGF10 (ENSMMSG00000003923)	PRRC1 (ENSMMSG00000003907)	ENSMMSG00000003901	ENSMMSG00000003899	CTXN3 (ENSMMSG00000003894)	CCDC192 (ENSMMSG00000003883)	SLC12A2 (ENSMMSG00000003838)	FBN2 (ENSMMSG00000003573)	ENSMMSG00000003519 #22	SLC27A6 (ENSMMSG00000003503)	ISOC1 (ENSMMSG00000003487)	ADAMTS19 (ENSMMSG00000003456)	MINAR2 (ENSMMSG00000003444)	CHSY3 (ENSMMSG00000003436)
Cetacea	ANCESTRAL SPECIES	18	ENSGT00950000186343	ENSGT00390000011034 #7	ENSGT00950000182836.b.b.b.b #9	ENSGT00880000138034 #10	ENSGT00940000155208 #11	ENSGT00940000160810 #12	ENSGT00940000155089 #13	ENSGT00940000162065 #14	ENSGT00390000013943 #15	ENSGT01030000234639.A.a #16	ENSGT00940000153167.A.a #17	ENSGT00390000006394 #18	ENSGT00550000074878 #19	ENSGT01030000234626.B #20	ENSGT00390000013931.a.b.b #21	ENSGT00390000011877 #22	ENSGT00390000017281.j	ENSGT00530000063558.B #23	ENSGT00940000157993 #24	ENSGT00390000004172 #25	ENSGT01090000260082.d.b #26	ENSGT00940000160610 #27	ENSGT00940000154531.k.b #28	ENSGT00390000007183 #29	ENSGT01010000229882	ENSGT00940000155913 #30	ENSGT00390000004028 #31	ENSGT00390000003560 #32	ENSGT00940000160715 #33	ENSGT00940000156557 #34	ENSGT00940000156483 #35
Blue whale	DUPLICATION
Blue whale	MODERN SPECIES		ENSBMSG00010007139	HENMT1 (ENSBMSG00010007112)	ENSBMSG00010004597	EEIG2 (ENSBMSG00010004563)	ENSBMSG00010004544	ENSBMSG00010004529	SLC25A24 (ENSBMSG00010004461)	ENSBMSG00010004441	VAV3 (ENSBMSG00010004383)	NTNG1 (ENSBMSG00010004205)	PRMT6 (ENSBMSG00010004173)	ENSBMSG00010004162	ENSBMSG00010004150	ENSBMSG00010004127	RNPC3 (ENSBMSG00010004114)	ENSBMSG00010004098 #22	COL11A1 (ENSBMSG00010003909)	ENSBMSG00010003840	OLFM3 (ENSBMSG00010003798)	ENSBMSG00010003778	S1PR1 (ENSBMSG00010003770)	ENSBMSG00010003754	ENSBMSG00010003751	ENSBMSG00010003742	DPH5 (ENSBMSG00010003725)	SLC30A7 (ENSBMSG00010003707)	EXTL2 (ENSBMSG00010003690)	ENSBMSG00010003498	GPR88 (ENSBMSG00010003474)	CDC14A (ENSBMSG00010003418)	RTCA (ENSBMSG00010003361)
Blue whale	MODERN SPECIES	3	ENSBMSG00010010664	AGPAT4 (ENSBMSG00010010688) #9	MAP3K4 (ENSBMSG00010010709) #10	ENSBMSG00010010741 #11	SLC22A3 (ENSBMSG00010010779) #12	SLC22A2 (ENSBMSG00010010814) #13	SLC22A1 (ENSBMSG00010010839) #14	ENSBMSG00010010858	IGF2R (ENSBMSG00010010889) #15	MAS1 (ENSBMSG00010010947) #16	PNLDC1 (ENSBMSG00010010984) #17	MRPL18 (ENSBMSG00010011042) #18	TCP1 (ENSBMSG00010011064) #19	ACAT2 (ENSBMSG00010011102) #20	ENSBMSG00010011125 #21	ENSBMSG00010011159 #22	ENSBMSG00010011186	FNDC1 (ENSBMSG00010011227) #23	TAGAP (ENSBMSG00010011351) #24	RSPH3 (ENSBMSG00010011388) #25	EZR (ENSBMSG00010011421) #26	SYTL3 (ENSBMSG00010011475) #27	ENSBMSG00010011520 #28	TMEM181 (ENSBMSG00010011555) #29	ENSBMSG00010011592	TULP4 (ENSBMSG00010011601) #30	GTF2H5 (ENSBMSG00010011624) #31	SERAC1 (ENSBMSG00010011654) #32	SYNJ2 (ENSBMSG00010011701) #33	ENSBMSG00010011748	SNX9 (ENSBMSG00010011766) #34
Odontoceti	ANCESTRAL SPECIES	18	ENSGT00940000157330	ENSGT00390000011034 #7	ENSGT00950000182836.b.b.b.b #9	ENSGT00880000138034 #10	ENSGT00940000155208 #11	ENSGT00940000160810 #12	ENSGT00940000155089 #13	ENSGT00940000162065 #14	ENSGT00390000013943 #15	ENSGT01030000234639.A.a #16	ENSGT00940000153167.A.a #17	ENSGT00390000006394 #18	ENSGT00550000074878 #19	ENSGT01030000234626.B #20	ENSGT00390000013931.a.b.b #21	ENSGT00390000011877 #22	ENSGT00390000017281.j	ENSGT00530000063558.B #23	ENSGT00940000157993 #24	ENSGT00390000004172 #25	ENSGT01090000260082.d.b #26	ENSGT00940000160610 #27	ENSGT00940000154531.k.b #28	ENSGT00390000007183 #29	ENSGT01010000229882	ENSGT00940000155913 #30	ENSGT00390000004028 #31	ENSGT00390000003560 #32	ENSGT00940000160715 #33	ENSGT00940000156557 #34	ENSGT00940000156483 #35
Sperm whale	MODERN SPECIES	1	QKI (ENSPCTG00005002421)	PACRG (ENSPCTG00005002460)	ENSPCTG00005002486 #7	ENSPCTG00005002514	ENSPCTG00005002531	MAP3K4 (ENSPCTG00005002630) #10	ENSPCTG00005002991	ENSPCTG00005003046 #11	SLC22A3 (ENSPCTG00005003082) #12	ENSPCTG00005003105	SLC22A2 (ENSPCTG00005003126) #13	SLC22A1 (ENSPCTG00005003152) #14	IGF2R (ENSPCTG00005003188) #15	MAS1 (ENSPCTG00005003224) #16	WTAP (ENSPCTG00005003235) #21	SOD2 (ENSPCTG00005003274) #22	FNDC1 (ENSPCTG00005003312) #23	ENSPCTG00005003361 #24	RSPH3 (ENSPCTG00005003392) #25	EZR (ENSPCTG00005003418) #26	SYTL3 (ENSPCTG00005003470) #27	DYNLT1 (ENSPCTG00005003532) #28	TMEM181 (ENSPCTG00005003562) #29	ENSPCTG00005003602 #30	GTF2H5 (ENSPCTG00005003620) #31	SERAC1 (ENSPCTG00005003673) #32	ENSPCTG00005003749 #33	ENSPCTG00005003781	ENSPCTG00005003788	SNX9 (ENSPCTG00005003806) #34	ZDHHC14 (ENSPCTG00005003841) #35
Odontoceti_a	ANCESTRAL SPECIES	16	ENSGT00940000157330	ENSGT00390000011034 #7	ENSGT00950000182836.b.b.b.b #9	ENSGT00880000138034 #10	ENSGT00940000155208 #11	ENSGT00940000160810 #12	ENSGT00940000155089 #13	ENSGT00940000162065 #14	ENSGT00390000013943 #15	ENSGT01030000234639.A.a #16	ENSGT00940000153167.A.a #17	ENSGT00390000006394 #18	ENSGT00550000074878 #19	ENSGT01030000234626.B #20	ENSGT00390000013931.a.b.b #21	ENSGT00390000011877 #22	ENSGT00390000017281.j	ENSGT00530000063558.B #23	ENSGT00940000157993 #24	ENSGT00390000004172 #25	ENSGT01090000260082.d.b #26	ENSGT00940000160610 #27	ENSGT00940000154531.k.b #28	ENSGT00390000007183 #29	ENSGT01010000229882	ENSGT00940000155913 #30	ENSGT00390000004028 #31	ENSGT00390000003560 #32	ENSGT00940000160715 #33	ENSGT00940000156557 #34	ENSGT00940000156483 #35
Odontoceti_b	ANCESTRAL SPECIES	18	ENSGT00940000154508.a.a.h	ENSGT00950000182836.b.b.b.b #9	ENSGT00880000138034 #10	ENSGT00940000155208 #11	ENSGT00940000160810 #12	ENSGT00940000155089 #13	ENSGT00390000018085.a.b.b	ENSGT00940000162065 #14	ENSGT00390000013943 #15	ENSGT01030000234639.A.a #16	ENSGT00940000153167.A.a #17	ENSGT00390000006394 #18	ENSGT00550000074878 #19	ENSGT01030000234626.B #20	ENSGT00390000013931.a.b.b #21	ENSGT00390000011877 #22	ENSGT00390000017281.j	ENSGT00530000063558.B #23	ENSGT00940000157993 #24	ENSGT00390000004172 #25	ENSGT01090000260082.d.b #26	ENSGT00940000160610 #27	ENSGT00940000154531.k.b #28	ENSGT00390000007183 #29	ENSGT01010000229882	ENSGT00940000155913 #30	ENSGT00390000004028 #31	ENSGT00390000003560 #32	ENSGT00940000160715 #33	ENSGT00940000156557 #34	ENSGT00940000156483 #35
Vaquita	MODERN SPECIES	3	ENSPSNG00000016413	AGPAT4 (ENSPSNG00000016495) #9	MAP3K4 (ENSPSNG00000016678) #10	ENSPSNG00000016905 #11	SLC22A3 (ENSPSNG00000017154) #12	SLC22A2 (ENSPSNG00000017306) #13	ENSPSNG00000017468	ENSPSNG00000017517 #14	IGF2R (ENSPSNG00000017592) #15	MAS1 (ENSPSNG00000017797) #16	PNLDC1 (ENSPSNG00000017839) #17	MRPL18 (ENSPSNG00000018155) #18	TCP1 (ENSPSNG00000018222) #19	ACAT2 (ENSPSNG00000018304) #20	WTAP (ENSPSNG00000018363) #21	SOD2 (ENSPSNG00000018468) #22	ENSPSNG00000018560	FNDC1 (ENSPSNG00000018682) #23	TAGAP (ENSPSNG00000018854) #24	RSPH3 (ENSPSNG00000019104) #25	EZR (ENSPSNG00000019386) #26	SYTL3 (ENSPSNG00000019533) #27	ENSPSNG00000019724 #28	TMEM181 (ENSPSNG00000019785) #29	TULP4 (ENSPSNG00000019944) #30	GTF2H5 (ENSPSNG00000020011) #31	SERAC1 (ENSPSNG00000020095) #32	SYNJ2 (ENSPSNG00000020311) #33	ENSPSNG00000020609	SNX9 (ENSPSNG00000020632) #34	ZDHHC14 (ENSPSNG00000020697) #35
Monodontidae	ANCESTRAL SPECIES	18	ENSGT00940000154508.a.a.h	ENSGT00950000182836.b.b.b.b #9	ENSGT00880000138034 #10	ENSGT00940000155208 #11	ENSGT00940000160810 #12	ENSGT00940000155089 #13	ENSGT00390000018085.a.b.b	ENSGT00940000162065 #14	ENSGT00390000013943 #15	ENSGT01030000234639.A.a #16	ENSGT00940000153167.A.a #17	ENSGT00390000006394 #18	ENSGT00550000074878 #19	ENSGT01030000234626.B #20	ENSGT00390000013931.a.b.b #21	ENSGT00390000011877 #22	ENSGT00390000017281.j	ENSGT00530000063558.B #23	ENSGT00940000157993 #24	ENSGT00390000004172 #25	ENSGT01090000260082.d.b #26	ENSGT00940000160610 #27	ENSGT00940000154531.k.b #28	ENSGT00390000007183 #29	ENSGT01010000229882	ENSGT00940000155913 #30	ENSGT00390000004028 #31	ENSGT00390000003560 #32	ENSGT00940000160715 #33	ENSGT00940000156557 #34	ENSGT00940000156483 #35
Narwhal	MODERN SPECIES	301	ENSMMNG00015011816	AGPAT4 (ENSMMNG00015011728) #9	MAP3K4 (ENSMMNG00015011572) #10	ENSMMNG00015011493 #11	SLC22A3 (ENSMMNG00015011477) #12	SLC22A2 (ENSMMNG00015011459) #13	ENSMMNG00015011446	SLC22A1 (ENSMMNG00015011429) #14	IGF2R (ENSMMNG00015011406) #15	MAS1 (ENSMMNG00015011391) #16	PNLDC1 (ENSMMNG00015011367) #17	MRPL18 (ENSMMNG00015011349) #18	TCP1 (ENSMMNG00015011321) #19	ACAT2 (ENSMMNG00015011293) #20	WTAP (ENSMMNG00015011260) #21	SOD2 (ENSMMNG00015011230) #22	ENSMMNG00015011212	FNDC1 (ENSMMNG00015011181) #23	TAGAP (ENSMMNG00015011155) #24	RSPH3 (ENSMMNG00015011129) #25	EZR (ENSMMNG00015011090) #26	SYTL3 (ENSMMNG00015011069) #27	ENSMMNG00015011048 #28	TMEM181 (ENSMMNG00015011008) #29	ENSMMNG00015010987	TULP4 (ENSMMNG00015010941) #30	GTF2H5 (ENSMMNG00015010910) #31	SERAC1 (ENSMMNG00015010803) #32	SYNJ2 (ENSMMNG00015010674) #33	ENSMMNG00015010636	SNX9 (ENSMMNG00015010588) #34
Beluga whale	MODERN SPECIES	80	ENSDLEG00000014046	ENSDLEG00000014031	AGPAT4 (ENSDLEG00000013962) #9	MAP3K4 (ENSDLEG00000013778) #10	PLG (ENSDLEG00000013736) #11	SLC22A3 (ENSDLEG00000013670) #12	SLC22A2 (ENSDLEG00000013647) #13	SLC22A1 (ENSDLEG00000013591) #14	IGF2R (ENSDLEG00000013373) #15	MAS1 (ENSDLEG00000013351) #16	PNLDC1 (ENSDLEG00000013298) #17	MRPL18 (ENSDLEG00000013282) #18	TCP1 (ENSDLEG00000013249) #19	ACAT2 (ENSDLEG00000013224) #20	WTAP (ENSDLEG00000013205) #21	SOD2 (ENSDLEG00000013188) #22	ENSDLEG00000013163	ENSDLEG00000013131 #23	TAGAP (ENSDLEG00000013116) #24	RSPH3 (ENSDLEG00000013000) #25	EZR (ENSDLEG00000012951) #26	SYTL3 (ENSDLEG00000012934) #27	DYNLT1 (ENSDLEG00000012925) #28	TMEM181 (ENSDLEG00000012897) #29	TULP4 (ENSDLEG00000012862) #30	GTF2H5 (ENSDLEG00000012851) #31	SERAC1 (ENSDLEG00000012822) #32	SYNJ2 (ENSDLEG00000012744) #33	SNX9 (ENSDLEG00000012695) #34	ZDHHC14 (ENSDLEG00000012658) #35	ENSDLEG00000012649
Dolphin	DUPLICATION
Dolphin	MODERN SPECIES	3445											PNLDC1 (ENSTTRG00000010409) #17	MRPL18 (ENSTTRG00000010404) #18	TCP1 (ENSTTRG00000010393) #19	ACAT2 (ENSTTRG00000010389) #20	WTAP (ENSTTRG00000010379) #21	ENSTTRG00000010355 #22
Dolphin	MODERN SPECIES	5069																ENSTTRG00000014364 #22
Laurasiatheria_b	ANCESTRAL SPECIES	7	ENSGT00950000182836.b.b.b.b #9	ENSGT01030000234985	ENSGT00880000138034 #10	ENSGT00940000155208 #11	ENSGT00940000160810 #12	ENSGT00940000155089 #13	ENSGT00940000162065 #14	ENSGT00390000013943 #15	ENSGT01030000234639.A.a #16	ENSGT00940000153167.A.a #17	ENSGT00390000006394 #18	ENSGT00550000074878 #19	ENSGT01030000234626.B #20	ENSGT00390000013931.a.b.b #21	ENSGT00390000013931.a.a.b ##21	ENSGT00390000011877 #22	ENSGT00530000063558.B #23	ENSGT00940000157993 #24	ENSGT00390000004172 #25	ENSGT01090000260082.d.b #26	ENSGT00940000160610 #27	ENSGT00940000154531 #28	ENSGT00390000007183 #29	ENSGT00940000155913 #30	ENSGT00390000004028 #31	ENSGT00390000003560 #32	ENSGT00940000160715 #33	ENSGT00940000179662	ENSGT00940000156557 #34	ENSGT00940000156483 #35	ENSGT00390000008642 #37
Carnivora	ANCESTRAL SPECIES	4	ENSGT00390000011034 #7	ENSGT00950000182836.b.b.b.b #9	ENSGT01030000234985	ENSGT00880000138034 #10	ENSGT00940000155208 #11	ENSGT00940000160810 #12	ENSGT00940000155089 #13	ENSGT00940000162065 #14	ENSGT00390000013943 #15	ENSGT01030000234639.A.a #16	ENSGT00940000153167.A.a #17	ENSGT00390000006394 #18	ENSGT00550000074878 #19	ENSGT01030000234626.B #20	ENSGT00390000013931.a.b.b #21	ENSGT00390000011877 #22	ENSGT00530000063558.B #23	ENSGT00940000157993 #24	ENSGT00390000004172 #25	ENSGT01090000260082.d.b #26	ENSGT00940000160610 #27	ENSGT00940000154531 #28	ENSGT00390000007183 #29	ENSGT00940000155913 #30	ENSGT00390000004028 #31	ENSGT00390000003560 #32	ENSGT00940000160715 #33	ENSGT00940000179662	ENSGT00940000156557 #34	ENSGT00940000156483 #35	ENSGT00390000008642 #37
Felidae	ANCESTRAL SPECIES	5	ENSGT00390000011034 #7	ENSGT00950000182836.b.b.b.b #9	ENSGT01030000234985	ENSGT00880000138034 #10	ENSGT00940000155208 #11	ENSGT00940000160810 #12	ENSGT00940000155089 #13	ENSGT00940000162065 #14	ENSGT00390000013943 #15	ENSGT01030000234639.A.a #16	ENSGT00940000153167.A.a #17	ENSGT00390000006394 #18	ENSGT00550000074878 #19	ENSGT01030000234626.B #20	ENSGT00390000013931.a.b.b #21	ENSGT00390000011877 #22	ENSGT00530000063558.B #23	ENSGT00940000157993 #24	ENSGT00390000004172 #25	ENSGT01090000260082.d.b #26	ENSGT00940000160610 #27	ENSGT00940000154531 #28	ENSGT00390000007183 #29	ENSGT00940000155913 #30	ENSGT00390000004028 #31	ENSGT00390000003560 #32	ENSGT00940000160715 #33	ENSGT00940000156557 #34	ENSGT00940000156483 #35	ENSGT00390000008642 #37	ENSGT00940000155634
Panthera	ANCESTRAL SPECIES	7	ENSGT00940000157330	ENSGT00390000011034 #7	ENSGT00950000182836.b.b.b.b #9	ENSGT00880000138034 #10	ENSGT00940000155208 #11	ENSGT00940000160810 #12	ENSGT00940000155089 #13	ENSGT00940000162065 #14	ENSGT00390000013943 #15	ENSGT01030000234639.A.a #16	ENSGT00940000153167.A.a #17	ENSGT00390000006394 #18	ENSGT00550000074878 #19	ENSGT01030000234626.B #20	ENSGT00390000013931.a.b.b #21	ENSGT00390000011877 #22	ENSGT00530000063558.B #23	ENSGT00940000157993.n #24	ENSGT00390000004172 #25	ENSGT01090000260082.d.b #26	ENSGT00940000160610 #27	ENSGT00940000154531 #28	ENSGT00390000007183 #29	ENSGT00940000155913 #30	ENSGT00390000004028 #31	ENSGT00390000003560 #32	ENSGT00940000160715 #33	ENSGT00940000156557 #34	ENSGT00940000156483 #35	ENSGT00390000008642 #37	ENSGT00940000155634
Panthera_a	ANCESTRAL SPECIES	4	ENSGT00940000157330	ENSGT00390000011034 #7	ENSGT00950000182836.b.b.b.b #9	ENSGT00880000138034 #10	ENSGT00940000155208 #11	ENSGT00940000160810 #12	ENSGT00940000155089 #13	ENSGT00940000162065 #14	ENSGT00390000013943 #15	ENSGT01030000234639.A.a #16	ENSGT00940000153167.A.a #17	ENSGT00390000006394 #18	ENSGT00550000074878 #19	ENSGT01030000234626.B #20	ENSGT00390000013931.a.b.b #21	ENSGT00390000011877 #22	ENSGT00530000063558.B #23	ENSGT00940000157993.n #24	ENSGT00390000004172 #25	ENSGT01090000260082.d.b #26	ENSGT00940000160610 #27	ENSGT00940000154531 #28	ENSGT00390000007183 #29	ENSGT00940000155913 #30	ENSGT00390000004028 #31	ENSGT00390000003560 #32	ENSGT00940000160715 #33	ENSGT00940000156557 #34	ENSGT00940000156483 #35	ENSGT00390000008642 #37	ENSGT00940000155634
leopard	MODERN SPECIES	59	PACRG (ENSPPRG00000018305)	PRKN (ENSPPRG00000002801) #7	AGPAT4 (ENSPPRG00000003125) #9	MAP3K4 (ENSPPRG00000007372) #10	ENSPPRG00000007637 #11	SLC22A3 (ENSPPRG00000007817) #12	SLC22A2 (ENSPPRG00000008200) #13	SLC22A1 (ENSPPRG00000009083) #14	IGF2R (ENSPPRG00000010975) #15	MAS1 (ENSPPRG00000016120) #16	PNLDC1 (ENSPPRG00000012854) #17	MRPL18 (ENSPPRG00000013063) #18	TCP1 (ENSPPRG00000014032) #19	ACAT2 (ENSPPRG00000014607) #20	WTAP (ENSPPRG00000016764) #21	SOD2 (ENSPPRG00000019418) #22	ENSPPRG00000000588 #24	RSPH3 (ENSPPRG00000001447) #25	EZR (ENSPPRG00000002344) #26	SYTL3 (ENSPPRG00000004402) #27	DYNLT1 (ENSPPRG00000005411) #28	TMEM181 (ENSPPRG00000006100) #29	TULP4 (ENSPPRG00000006978) #30	GTF2H5 (ENSPPRG00000007199) #31	SERAC1 (ENSPPRG00000007784) #32	ENSPPRG00000016782	SYNJ2 (ENSPPRG00000009068) #33	SNX9 (ENSPPRG00000009191) #34	ZDHHC14 (ENSPPRG00000009654) #35	TMEM242 (ENSPPRG00000010247) #37	ARID1B (ENSPPRG00000011211)
lion	MODERN SPECIES	5	AGPAT4 (ENSPLOG00000004245) #9	MAP3K4 (ENSPLOG00000004139) #10	ENSPLOG00000004087 #11	ENSPLOG00000004079 #11	ENSPLOG00000004061 #11	SLC22A3 (ENSPLOG00000004048) #12	SLC22A2 (ENSPLOG00000004027) #13	SLC22A1 (ENSPLOG00000004002) #14	IGF2R (ENSPLOG00000003880) #15	MAS1 (ENSPLOG00000003857) #16	PNLDC1 (ENSPLOG00000003816) #17	MRPL18 (ENSPLOG00000003790) #18	TCP1 (ENSPLOG00000003746) #19	ACAT2 (ENSPLOG00000003718) #20	WTAP (ENSPLOG00000003697) #21	SOD2 (ENSPLOG00000003669) #22	FNDC1 (ENSPLOG00000003601) #23	TAGAP (ENSPLOG00000003565) #24	RSPH3 (ENSPLOG00000003506) #25	EZR (ENSPLOG00000003444) #26	SYTL3 (ENSPLOG00000003399) #27	DYNLT1 (ENSPLOG00000003373) #28	TMEM181 (ENSPLOG00000003343) #29	ENSPLOG00000003310	TULP4 (ENSPLOG00000003250) #30	GTF2H5 (ENSPLOG00000003144) #31	SERAC1 (ENSPLOG00000003108) #32	ENSPLOG00000003092	SYNJ2 (ENSPLOG00000002967) #33	SNX9 (ENSPLOG00000002855) #34	ZDHHC14 (ENSPLOG00000002818) #35
Tiger	MODERN SPECIES	551	PRKN (ENSPTIG00000021925) #7	AGPAT4 (ENSPTIG00000021603) #9	MAP3K4 (ENSPTIG00000017590) #10	ENSPTIG00000010411 #11	SLC22A3 (ENSPTIG00000008644) #12	SLC22A2 (ENSPTIG00000006985) #13	SLC22A1 (ENSPTIG00000019426) #14	IGF2R (ENSPTIG00000015202) #15	ENSPTIG00000014351	MAS1 (ENSPTIG00000001177) #16	PNLDC1 (ENSPTIG00000011501) #17	MRPL18 (ENSPTIG00000010107) #18	TCP1 (ENSPTIG00000007384) #19	ACAT2 (ENSPTIG00000006762) #20	WTAP (ENSPTIG00000004824) #21	SOD2 (ENSPTIG00000018855) #22	ENSPTIG00000014899 #24	ENSPTIG00000013679 #24	RSPH3 (ENSPTIG00000010790) #25	EZR (ENSPTIG00000003011) #26	SYTL3 (ENSPTIG00000016444) #27	DYNLT1 (ENSPTIG00000015848) #28	TMEM181 (ENSPTIG00000011656) #29	TULP4 (ENSPTIG00000007104) #30	GTF2H5 (ENSPTIG00000006736) #31	ENSPTIG00000005689 #32	SYNJ2 (ENSPTIG00000018780) #33	SNX9 (ENSPTIG00000016966) #34	ZDHHC14 (ENSPTIG00000014488) #35	TMEM242 (ENSPTIG00000013511) #37	ARID1B (ENSPTIG00000009353)
Cat	MODERN SPECIES	236	PRKN (ENSFCAG00000038081) #7	AGPAT4 (ENSFCAG00000000357) #9	ENSFCAG00000038094	MAP3K4 (ENSFCAG00000000356) #10	PLG (ENSFCAG00000023975) #11	SLC22A3 (ENSFCAG00000000355) #12	SLC22A2 (ENSFCAG00000002852) #13	SLC22A1 (ENSFCAG00000002851) #14	IGF2R (ENSFCAG00000002850) #15	MAS1 (ENSFCAG00000002849) #16	PNLDC1 (ENSFCAG00000002848) #17	MRPL18 (ENSFCAG00000002847) #18	TCP1 (ENSFCAG00000002846) #19	ACAT2 (ENSFCAG00000002845) #20	WTAP (ENSFCAG00000002844) #21	SOD2 (ENSFCAG00000002843) #22	FNDC1 (ENSFCAG00000022317) #23	TAGAP (ENSFCAG00000014702) #24	RSPH3 (ENSFCAG00000028166) #25	EZR (ENSFCAG00000007992) #26	SYTL3 (ENSFCAG00000007991) #27	DYNLT1 (ENSFCAG00000007990) #28	TMEM181 (ENSFCAG00000007988) #29	TULP4 (ENSFCAG00000007987) #30	GTF2H5 (ENSFCAG00000034208) #31	SERAC1 (ENSFCAG00000010855) #32	SYNJ2 (ENSFCAG00000010854) #33	SNX9 (ENSFCAG00000010853) #34	ZDHHC14 (ENSFCAG00000006280) #35	TMEM242 (ENSFCAG00000036867) #37	ARID1B (ENSFCAG00000006278)
Caniformia	ANCESTRAL SPECIES	3	ENSGT00390000011034 #7	ENSGT00950000182836.b.b.b.b #9	ENSGT01030000234985	ENSGT00880000138034 #10	ENSGT00940000155208 #11	ENSGT00940000160810 #12	ENSGT00940000155089 #13	ENSGT00940000162065 #14	ENSGT00390000013943 #15	ENSGT01030000234639.A.a #16	ENSGT00940000153167.A.a #17	ENSGT00390000006394 #18	ENSGT00550000074878 #19	ENSGT01030000234626.B #20	ENSGT00390000013931.a.b.b #21	ENSGT00390000011877 #22	ENSGT00530000063558.B #23	ENSGT00940000157993 #24	ENSGT00390000004172 #25	ENSGT01090000260082.d.b #26	ENSGT00940000160610 #27	ENSGT00940000154531 #28	ENSGT00390000007183 #29	ENSGT00940000155913 #30	ENSGT00390000004028 #31	ENSGT00390000003560 #32	ENSGT00940000160715 #33	ENSGT00940000179662	ENSGT00940000156557 #34	ENSGT00940000156483 #35	ENSGT00390000008642 #37
Caniformia_b	ANCESTRAL SPECIES	6	ENSGT00390000011034 #7	ENSGT00950000182836.b.b.b.b #9	ENSGT01030000234985	ENSGT00880000138034 #10	ENSGT00940000155208 #11	ENSGT00940000160810 #12	ENSGT00940000155089 #13	ENSGT00940000162065 #14	ENSGT00390000013943 #15	ENSGT01030000234639.A.a #16	ENSGT00940000153167.A.a #17	ENSGT00390000006394 #18	ENSGT00550000074878 #19	ENSGT01030000234626.B #20	ENSGT00390000013931.a.b.b #21	ENSGT00390000011877 #22	ENSGT00530000063558.B #23	ENSGT00940000157993 #24	ENSGT00390000004172 #25	ENSGT01090000260082.d.b #26	ENSGT00940000160610 #27	ENSGT00940000154531 #28	ENSGT00390000007183 #29	ENSGT00940000155913 #30	ENSGT00390000004028 #31	ENSGT00390000003560 #32	ENSGT00940000160715 #33	ENSGT00940000179662	ENSGT00940000156557 #34	ENSGT00940000156483 #35	ENSGT00390000008642 #37
Mustelinae	ANCESTRAL SPECIES	26	ENSGT00390000011034 #7	ENSGT00950000182836.b.b.b.b #9	ENSGT01030000234985	ENSGT00880000138034 #10	ENSGT00940000155208 #11	ENSGT00940000160810 #12	ENSGT00940000155089 #13	ENSGT00940000162065 #14	ENSGT00390000013943 #15	ENSGT01030000234639.A.a #16	ENSGT00940000153167.A.a #17	ENSGT00390000006394 #18	ENSGT00550000074878 #19	ENSGT01030000234626.B #20	ENSGT00390000013931.a.b.b #21	ENSGT00390000011877 #22	ENSGT00530000063558.B #23	ENSGT00940000157993 #24	ENSGT00390000004172 #25	ENSGT01090000260082.d.b #26	ENSGT00940000160610 #27	ENSGT00940000154531 #28	ENSGT00390000007183 #29	ENSGT00940000155913 #30	ENSGT00390000004028 #31	ENSGT00390000003560 #32	ENSGT00940000160715 #33	ENSGT00940000156557 #34	ENSGT00940000156483 #35	ENSGT00390000008642 #37	ENSGT00940000155634
American mink	MODERN SPECIES	4	ENSNVIG00000010918 #7	AGPAT4 (ENSNVIG00000010903) #9	ENSNVIG00000010894	MAP3K4 (ENSNVIG00000010747) #10	ENSNVIG00000010704 #11	SLC22A3 (ENSNVIG00000010693) #12	SLC22A2 (ENSNVIG00000010662) #13	SLC22A1 (ENSNVIG00000010572) #14	IGF2R (ENSNVIG00000010447) #15	MAS1 (ENSNVIG00000010425) #16	PNLDC1 (ENSNVIG00000010375) #17	RM18 (ENSNVIG00000010351) #18	TCP1 (ENSNVIG00000010276) #19	ACAT2 (ENSNVIG00000010262) #20	WTAP (ENSNVIG00000010202) #21	SODM (ENSNVIG00000010142) #22	ENSNVIG00000010133	FNDC1 (ENSNVIG00000009936) #23	TAGAP (ENSNVIG00000009891) #24	EZR (ENSNVIG00000009830) #26	SYTL3 (ENSNVIG00000009680) #27	DYNLT1 (ENSNVIG00000009650) #28	TMEM181 (ENSNVIG00000009381) #29	TULP4 (ENSNVIG00000009306) #30	TF2H5 (ENSNVIG00000009285) #31	SERAC1 (ENSNVIG00000009167) #32	SYNJ2 (ENSNVIG00000009140) #33	SNX9 (ENSNVIG00000009085) #34	ZDHHC14 (ENSNVIG00000009059) #35	TM242 (ENSNVIG00000009036) #37	ARID1B (ENSNVIG00000008689)
Ferret	MODERN SPECIES	321	ENSMPUG00000004601 #7	AGPAT4 (ENSMPUG00000004604) #9	MAP3K4 (ENSMPUG00000004612) #10	ENSMPUG00000004632 #11	SLC22A3 (ENSMPUG00000004654) #12	SLC22A2 (ENSMPUG00000004670) #13	SLC22A1 (ENSMPUG00000004685) #14	IGF2R (ENSMPUG00000004888) #15	ENSMPUG00000019615	MAS1 (ENSMPUG00000019617) #16	PNLDC1 (ENSMPUG00000004920) #17	MRPL18 (ENSMPUG00000005009) #18	TCP1 (ENSMPUG00000005020) #19	ACAT2 (ENSMPUG00000005030) #20	WTAP (ENSMPUG00000005036) #21	SOD2 (ENSMPUG00000005045) #22	FNDC1 (ENSMPUG00000005104) #23	TAGAP (ENSMPUG00000005167) #24	RSPH3 (ENSMPUG00000005176) #25	EZR (ENSMPUG00000005183) #26	SYTL3 (ENSMPUG00000005195) #27	DYNLT1 (ENSMPUG00000005205) #28	TMEM181 (ENSMPUG00000005207) #29	TULP4 (ENSMPUG00000005290) #30	GTF2H5 (ENSMPUG00000005299) #31	SERAC1 (ENSMPUG00000005304) #32	SYNJ2 (ENSMPUG00000005323) #33	SNX9 (ENSMPUG00000005333) #34	ZDHHC14 (ENSMPUG00000005351) #35	ENSMPUG00000019619	TMEM242 (ENSMPUG00000005363) #37
Ursidae	ANCESTRAL SPECIES	22	ENSGT00940000157330	ENSGT00390000011034 #7	ENSGT00950000182836.b.b.b.b #9	ENSGT00880000138034 #10	ENSGT00940000155208 #11	ENSGT00940000160810 #12	ENSGT00940000155089 #13	ENSGT00940000162065 #14	ENSGT00390000013943 #15	ENSGT01030000234639.A.a #16	ENSGT00940000153167.A.a #17	ENSGT00390000006394 #18	ENSGT00550000074878 #19	ENSGT01030000234626.B #20	ENSGT00390000013931.a.b.b #21	ENSGT00390000011877 #22	ENSGT00530000063558.B #23	ENSGT00940000157993 #24	ENSGT00390000004172 #25	ENSGT01090000260082.d.b #26	ENSGT00940000160610 #27	ENSGT00940000154531 #28	ENSGT00390000007183 #29	ENSGT00950000186188	ENSGT00940000155913 #30	ENSGT00390000004028 #31	ENSGT00390000003560 #32	ENSGT00940000160715 #33	ENSGT00940000179662	ENSGT00940000156557 #34	ENSGT00940000156483 #35
Ursus	ANCESTRAL SPECIES	81	ENSGT00970000197976	ENSGT00390000011034 #7	ENSGT00950000182836.b.b.b.b #9	ENSGT00880000138034 #10	ENSGT00940000155208 #11	ENSGT00940000160810 #12	ENSGT00940000155089 #13	ENSGT00940000162065 #14	ENSGT00390000013943 #15	ENSGT01030000234639.A.a #16	ENSGT00940000153167.A.a #17	ENSGT00390000006394 #18	ENSGT00550000074878 #19	ENSGT01030000234626.B #20	ENSGT00390000013931.a.b.b #21	ENSGT00390000011877 #22	ENSGT00530000063558.B #23	ENSGT00940000157993 #24	ENSGT00390000004172 #25	ENSGT01090000260082.d.b #26	ENSGT00940000160610 #27	ENSGT00940000154531 #28	ENSGT00390000007183 #29	ENSGT00950000186188	ENSGT00940000155913 #30	ENSGT00390000004028 #31	ENSGT00390000003560 #32	ENSGT00940000160715.e #33	ENSGT00940000179662	ENSGT00940000156557 #34	ENSGT00940000156483 #35
American black bear	MODERN SPECIES	2118															WTAP (ENSUAMG00000010364) #21	SOD2 (ENSUAMG00000010370) #22
Polar bear	MODERN SPECIES	150	ENSUMAG00000011729 #7	AGPAT4 (ENSUMAG00000011739) #9	MAP3K4 (ENSUMAG00000011760) #10	ENSUMAG00000011793 #11	SLC22A3 (ENSUMAG00000011813) #12	SLC22A2 (ENSUMAG00000011818) #13	SLC22A1 (ENSUMAG00000011827) #14	IGF2R (ENSUMAG00000011876) #15	MAS1 (ENSUMAG00000011898) #16	PNLDC1 (ENSUMAG00000011903) #17	MRPL18 (ENSUMAG00000011916) #18	TCP1 (ENSUMAG00000011924) #19	ACAT2 (ENSUMAG00000011942) #20	ENSUMAG00000011954	WTAP (ENSUMAG00000011957) #21	SOD2 (ENSUMAG00000011961) #22	FNDC1 (ENSUMAG00000011974) #23	TAGAP (ENSUMAG00000012036) #24	RSPH3 (ENSUMAG00000012040) #25	EZR (ENSUMAG00000012047) #26	SYTL3 (ENSUMAG00000012070) #27	DYNLT1 (ENSUMAG00000012151) #28	TMEM181 (ENSUMAG00000012155) #29	ENSUMAG00000012177	TULP4 (ENSUMAG00000012196) #30	GTF2H5 (ENSUMAG00000012271) #31	SERAC1 (ENSUMAG00000012320) #32	SYNJ2 (ENSUMAG00000012826) #33	SNX9 (ENSUMAG00000012847) #34	ZDHHC14 (ENSUMAG00000012855) #35	TMEM242 (ENSUMAG00000012861) #37
Giant Panda	DUPLICATION
Giant Panda	MODERN SPECIES	1370																ENSAMEG00000028935 #22
Giant Panda	MODERN SPECIES	1	PACRG (ENSAMEG00000008449)	PRKN (ENSAMEG00000015876) #7	ENSAMEG00000015885 #9	MAP3K4 (ENSAMEG00000015908) #10	ENSAMEG00000015960 #11	SLC22A3 (ENSAMEG00000015037) #12	SLC22A2 (ENSAMEG00000015045) #13	SLC22A1 (ENSAMEG00000015110) #14	IGF2R (ENSAMEG00000015172) #15	MAS1 (ENSAMEG00000019584) #16	PNLDC1 (ENSAMEG00000015371) #17	MRPL18 (ENSAMEG00000015398) #18	TCP1 (ENSAMEG00000015405) #19	ACAT2 (ENSAMEG00000015430) #20	WTAP (ENSAMEG00000025264) #21	ENSAMEG00000015466 #22	FNDC1 (ENSAMEG00000003564) #23	TAGAP (ENSAMEG00000009357) #24	RSPH3 (ENSAMEG00000009373) #25	EZR (ENSAMEG00000009395) #26	SYTL3 (ENSAMEG00000009448) #27	DYNLT1 (ENSAMEG00000009483) #28	TMEM181 (ENSAMEG00000009492) #29	ENSAMEG00000025985	TULP4 (ENSAMEG00000009544) #30	GTF2H5 (ENSAMEG00000028196) #31	SERAC1 (ENSAMEG00000009567) #32	SYNJ2 (ENSAMEG00000009581) #33	SNX9 (ENSAMEG00000009626) #34	ZDHHC14 (ENSAMEG00000009680) #35	ENSAMEG00000009699 #37
Canidae	ANCESTRAL SPECIES	34	ENSGT00390000011034 #7	ENSGT00950000182836.b.b.b.b #9	ENSGT00880000138034 #10	ENSGT01030000234985	ENSGT00940000155208 #11	ENSGT00940000160810 #12	ENSGT00940000155089 #13	ENSGT00940000162065 #14	ENSGT00390000013943 #15	ENSGT01030000234639.A.a #16	ENSGT00940000153167.A.a #17	ENSGT00390000006394 #18	ENSGT00550000074878 #19	ENSGT01030000234626.B #20	ENSGT00390000013931.a.b.b #21	ENSGT00390000011877 #22	ENSGT00530000063558.B #23	ENSGT00940000157993 #24	ENSGT00390000004172 #25	ENSGT01090000260082.d.b #26	ENSGT00940000160610 #27	ENSGT00940000154531 #28	ENSGT00390000007183 #29	ENSGT00940000155913 #30	ENSGT00390000004028 #31	ENSGT00390000003560 #32	ENSGT00940000160715 #33	ENSGT00940000179662	ENSGT00940000156557 #34	ENSGT00940000156483 #35	ENSGT00390000008642 #37
Red fox	MODERN SPECIES	157						SLC22A2 (ENSVVUG00000001717) #13	SLC22A1 (ENSVVUG00000001730) #14	IGF2R (ENSVVUG00000002250) #15	MAS1 (ENSVVUG00000006583) #16	PNLDC1 (ENSVVUG00000006586) #17	MRPL18 (ENSVVUG00000006607) #18	TCP1 (ENSVVUG00000006612) #19	ACAT2 (ENSVVUG00000006634) #20	ENSVVUG00000006644	WTAP (ENSVVUG00000006645) #21	ENSVVUG00000006676 #22	FNDC1 (ENSVVUG00000006697) #23	TAGAP (ENSVVUG00000006731) #24	ENSVVUG00000006737	RSPH3 (ENSVVUG00000006742) #25	EZR (ENSVVUG00000006757) #26	SYTL3 (ENSVVUG00000006766) #27	DYNLT1 (ENSVVUG00000006778) #28	TMEM181 (ENSVVUG00000006803) #29	TULP4 (ENSVVUG00000007373) #30	SERAC1 (ENSVVUG00000007380) #32	SYNJ2 (ENSVVUG00000007407) #33	ENSVVUG00000007425	SNX9 (ENSVVUG00000007430) #34	ZDHHC14 (ENSVVUG00000007465) #35	ENSVVUG00000007470 #37
Canis_lupus	ANCESTRAL SPECIES		ENSGT01090000260046.e.b.b.a.b.a.a.b.b.b.b.b.a.a.a.b.b	ENSGT00390000011034 #7	ENSGT00950000182836.b.b.b.b #9	ENSGT00880000138034 #10	ENSGT00940000155208 #11	ENSGT00940000160810 #12	ENSGT00940000155089 #13	ENSGT00940000162065 #14	ENSGT00390000013943 #15	ENSGT01030000234639.A.a #16	ENSGT00940000153167.A.a #17	ENSGT00390000006394 #18	ENSGT00550000074878 #19	ENSGT01030000234626.B #20	ENSGT00390000013931.a.b.b #21	ENSGT00390000011877 #22	ENSGT00530000063558.B #23	ENSGT00940000157993 #24	ENSGT00940000153524.b.a.a	ENSGT00390000004172 #25	ENSGT01090000260082.d.b #26	ENSGT00940000160610 #27	ENSGT00940000154531 #28	ENSGT00390000007183 #29	ENSGT00940000155913 #30	ENSGT00390000004028 #31	ENSGT00390000003560 #32	ENSGT00940000160715 #33	ENSGT00940000156557 #34	ENSGT00940000156483 #35	ENSGT00390000008642 #37
Dingo	MODERN SPECIES	125	ENSCAFG00020018877 #7	AGPAT4 (ENSCAFG00020018873) #9	MAP3K4 (ENSCAFG00020018821) #10	ENSCAFG00020018797 #11	SLC22A3 (ENSCAFG00020018716) #12	ENSCAFG00020018703	SLC22A2 (ENSCAFG00020018701) #13	ENSCAFG00020018698 #14	IGF2R (ENSCAFG00020017822) #15	MAS1 (ENSCAFG00020017759) #16	PNLDC1 (ENSCAFG00020017742) #17	MRPL18 (ENSCAFG00020017736) #18	TCP1 (ENSCAFG00020017729) #19	ACAT2 (ENSCAFG00020017725) #20	WTAP (ENSCAFG00020017718) #21	SOD2 (ENSCAFG00020017714) #22	FNDC1 (ENSCAFG00020017707) #23	TAGAP (ENSCAFG00020017706) #24	ENSCAFG00020017705	RSPH3 (ENSCAFG00020017704) #25	EZR (ENSCAFG00020017702) #26	SYTL3 (ENSCAFG00020017661) #27	ENSCAFG00020017657 #28	TMEM181 (ENSCAFG00020017638) #29	ENSCAFG00020017637	TULP4 (ENSCAFG00020017632) #30	SERAC1 (ENSCAFG00020016376) #32	SYNJ2 (ENSCAFG00020015809) #33	SNX9 (ENSCAFG00020015786) #34	ENSCAFG00020015774	ZDHHC14 (ENSCAFG00020015770) #35
Dog	DUPLICATION
Dog	MODERN SPECIES		PACRG (ENSCAFG00845002583)	PRKN (ENSCAFG00845002459) #7	AGPAT4 (ENSCAFG00845002356) #9	MAP3K4 (ENSCAFG00845002271) #10	PLG (ENSCAFG00845002222) #11	SLC22A3 (ENSCAFG00845002183) #12	SLC22A2 (ENSCAFG00845002163) #13	SLC22A1 (ENSCAFG00845002132) #14	IGF2R (ENSCAFG00845002089) #15	MAS1 (ENSCAFG00845002042) #16	PNLDC1 (ENSCAFG00845001998) #17	MRPL18 (ENSCAFG00845001976) #18	TCP1 (ENSCAFG00845001904) #19	ACAT2 (ENSCAFG00845001848) #20	WTAP (ENSCAFG00845001806) #21	SOD2 (ENSCAFG00845001754) #22	FNDC1 (ENSCAFG00845001542) #23	TAGAP (ENSCAFG00845001461) #24	ENSCAFG00845001443	RSPH3 (ENSCAFG00845001431) #25	EZR (ENSCAFG00845001373) #26	SYTL3 (ENSCAFG00845001348) #27	DYNLT1 (ENSCAFG00845001317) #28	TMEM181 (ENSCAFG00845001296) #29	TULP4 (ENSCAFG00845001243) #30	GTF2H5 (ENSCAFG00845001194) #31	SERAC1 (ENSCAFG00845001134) #32	SYNJ2 (ENSCAFG00845000995) #33	SNX9 (ENSCAFG00845000878) #34	ENSCAFG00845000840	ZDHHC14 (ENSCAFG00845000812) #35
Dog	MODERN SPECIES	10	EPB41L5 (ENSCAFG00845027396)	TMEM185B (ENSCAFG00845027210)	RALB (ENSCAFG00845027115)	INHBB (ENSCAFG00845027084)	ENSCAFG00845027051	GLI2 (ENSCAFG00845026918)	TFCP2L1 (ENSCAFG00845026654)	CLASP1 (ENSCAFG00845025721)	NIFK (ENSCAFG00845025461)	TSN (ENSCAFG00845025322)	ENSCAFG00845025240	ENSCAFG00845025188	CNTNAP5 (ENSCAFG00845024893)	ENSCAFG00845024766	ENSCAFG00845024678	ENSCAFG00845024641 #22	GYPC (ENSCAFG00845024613)	ENSCAFG00845024580	ENSCAFG00845024436	BIN1 (ENSCAFG00845023270)	CYP27C1 (ENSCAFG00845022851)	ERCC3 (ENSCAFG00845022679)	MAP3K2 (ENSCAFG00845022523)	PROC (ENSCAFG00845022381)	IWS1 (ENSCAFG00845022278)	MYO7B (ENSCAFG00845021552)	GPR17 (ENSCAFG00845021454)	LIMS2 (ENSCAFG00845020904)	SFT2D3 (ENSCAFG00845020767)	WDR33 (ENSCAFG00845020590)	POLR2D (ENSCAFG00845020484)
Laurasiatheria_c	ANCESTRAL SPECIES	6	ENSGT00950000182836.b.b.b.b #9	ENSGT01030000234985	ENSGT00880000138034 #10	ENSGT00940000155208 #11	ENSGT00940000160810 #12	ENSGT00940000155089 #13	ENSGT00940000162065 #14	ENSGT00390000013943 #15	ENSGT01030000234639.A.a #16	ENSGT00940000153167.A.a #17	ENSGT00390000006394 #18	ENSGT00550000074878 #19	ENSGT01030000234626.B #20	ENSGT00390000013931.a.b.b #21	ENSGT00390000013931.a.a.b ##21	ENSGT00390000011877 #22	ENSGT00530000063558.B #23	ENSGT00940000157993 #24	ENSGT00390000004172 #25	ENSGT01090000260082.d.b #26	ENSGT00940000160610 #27	ENSGT00940000154531 #28	ENSGT00390000007183 #29	ENSGT00940000155913 #30	ENSGT00390000004028 #31	ENSGT00390000003560 #32	ENSGT00940000160715 #33	ENSGT00940000156557 #34	ENSGT00940000156483 #35	ENSGT00390000008642 #37	ENSGT00940000163242.b
Equus	ANCESTRAL SPECIES	46	ENSGT00950000182836.b.b.b.b #9	ENSGT01030000234985	ENSGT00880000138034 #10	ENSGT00940000155208 #11	ENSGT00940000160810 #12	ENSGT00940000155089 #13	ENSGT00940000162065 #14	ENSGT00390000013943 #15	ENSGT01030000234639.A.a #16	ENSGT00940000153167.A.a #17	ENSGT00390000006394 #18	ENSGT00550000074878 #19	ENSGT01030000234626.B #20	ENSGT00390000013931.a.b.b #21	ENSGT00390000013931.a.a.b ##21	ENSGT00390000011877 #22	ENSGT00530000063558.B #23	ENSGT00940000157993 #24	ENSGT00390000004172 #25	ENSGT01090000260082.d.b #26	ENSGT00940000160610 #27	ENSGT00940000154531 #28	ENSGT00390000007183 #29	ENSGT00940000155913 #30	ENSGT00390000004028 #31	ENSGT00390000003560 #32	ENSGT00940000160715 #33	ENSGT00940000156557 #34	ENSGT00940000156483 #35	ENSGT00390000008642 #37	ENSGT00940000163242.b.b
Donkey	DUPLICATION
Donkey	MODERN SPECIES	20	ENSEASG00005019711 #9	ENSEASG00005019709	MAP3K4 (ENSEASG00005019701) #10	ENSEASG00005019697 #11	SLC22A3 (ENSEASG00005019679) #12	SLC22A2 (ENSEASG00005019670) #13	SLC22A1 (ENSEASG00005019667) #14	IGF2R (ENSEASG00005019232) #15	MAS1 (ENSEASG00005019033) #16	PNLDC1 (ENSEASG00005019029) #17	ENSEASG00005028667 #18	TCP1 (ENSEASG00005019021) #19	ACAT2 (ENSEASG00005019019) #20	WTAP (ENSEASG00005024385) #21	ENSEASG00005023660 ##21	ENSEASG00005019012 #22	FNDC1 (ENSEASG00005019003) #23	TAGAP (ENSEASG00005018994) #24	RSPH3 (ENSEASG00005018991) #25	EZR (ENSEASG00005018988) #26	SYTL3 (ENSEASG00005018960) #27	DYNLT1 (ENSEASG00005018942) #28	TMEM181 (ENSEASG00005018921) #29	TULP4 (ENSEASG00005018912) #30	ENSEASG00005032334 #31	SERAC1 (ENSEASG00005018908) #32	SYNJ2 (ENSEASG00005018902) #33	SNX9 (ENSEASG00005018899) #34	ZDHHC14 (ENSEASG00005038210) #35	ENSEASG00005032861	TMEM242 (ENSEASG00005018892) #37
Donkey	MODERN SPECIES	2	ENSEASG00005016110	ENSEASG00005023017	ENSEASG00005026132	ENSEASG00005015877	ENSEASG00005015872	SLCO4C1 (ENSEASG00005015860)	SLCO6A1 (ENSEASG00005033983)	PAM (ENSEASG00005015841)	GIN1 (ENSEASG00005015827)	PPIP5K2 (ENSEASG00005015801)	MACIR (ENSEASG00005026920)	ENSEASG00005015783	NUDT12 (ENSEASG00005015778)	EFNA5 (ENSEASG00005015772)	FBXL17 (ENSEASG00005015766)	ENSEASG00005015769 #22	ENSEASG00005036232	ENSEASG00005015753	PJA2 (ENSEASG00005015749)	MAN2A1 (ENSEASG00005015737)	TMEM232 (ENSEASG00005015729)	ENSEASG00005031404	TSLP (ENSEASG00005037462)	WDR36 (ENSEASG00005015708)	CAMK4 (ENSEASG00005015581)	STARD4 (ENSEASG00005037486)	NREP (ENSEASG00005027084)	EPB41L4A (ENSEASG00005015263)	ENSEASG00005035460	SRP19 (ENSEASG00005029127)	REEP5 (ENSEASG00005015179)
Horse	MODERN SPECIES	24	PRKN (ENSECAG00000004645) #7	AGPAT4 (ENSECAG00000001189) #9	MAP3K4 (ENSECAG00000012724) #10	ENSECAG00000031093	ENSECAG00000007979 #11	SLC22A3 (ENSECAG00000004372) #12	SLC22A2 (ENSECAG00000021017) #13	SLC22A1 (ENSECAG00000016404) #14	ENSECAG00000044529	IGF2R (ENSECAG00000019509) #15	MAS1 (ENSECAG00000028126) #16	PNLDC1 (ENSECAG00000012898) #17	MRPL18 (ENSECAG00000012515) #18	TCP1 (ENSECAG00000017953) #19	WTAP (ENSECAG00000003471) #21	SOD2 (ENSECAG00000011797) #22	FNDC1 (ENSECAG00000000239) #23	TAGAP (ENSECAG00000020888) #24	RSPH3 (ENSECAG00000014187) #25	EZR (ENSECAG00000018333) #26	SYTL3 (ENSECAG00000011770) #27	ENSECAG00000055754 #27	DYNLT1 (ENSECAG00000009612) #28	TMEM181 (ENSECAG00000020576) #29	TULP4 (ENSECAG00000017213) #30	GTF2H5 (ENSECAG00000038860) #31	SERAC1 (ENSECAG00000013154) #32	SYNJ2 (ENSECAG00000012646) #33	SNX9 (ENSECAG00000022623) #34	ZDHHC14 (ENSECAG00000018229) #35	TMEM242 (ENSECAG00000016335) #37
Chiroptera	ANCESTRAL SPECIES	3	ENSGT00940000157330	ENSGT00390000011034 #7	ENSGT00950000182836.b.b.b.b #9	ENSGT00880000138034 #10	ENSGT00940000155208 #11	ENSGT00940000160810 #12	ENSGT00940000155089 #13	ENSGT00940000162065 #14	ENSGT00390000013943 #15	ENSGT01030000234639.A.a #16	ENSGT00940000153167.A.a #17	ENSGT00390000006394 #18	ENSGT00550000074878 #19	ENSGT01030000234626.B #20	ENSGT00390000013931.a.b.b #21	ENSGT00390000011877 #22	ENSGT00530000063558.B #23	ENSGT00940000157993 #24	ENSGT00390000004172 #25	ENSGT01090000260082.d.b #26	ENSGT00940000160610 #27	ENSGT00940000154531 #28	ENSGT00390000007183 #29	ENSGT00940000155913 #30	ENSGT00390000004028 #31	ENSGT00390000003560 #32	ENSGT00940000160715 #33	ENSGT00940000156557 #34	ENSGT00940000156483 #35	ENSGT00390000008642 #37	ENSGT00940000163242.b
Megabat	MODERN SPECIES	4031								SLC22A1 (ENSPVAG00000005337) #14	IGF2R (ENSPVAG00000005331) #15	MAS1 (ENSPVAG00000005330) #16	PNLDC1 (ENSPVAG00000005325) #17	MRPL18 (ENSPVAG00000005322) #18	TCP1 (ENSPVAG00000005316) #19	ACAT2 (ENSPVAG00000005312) #20	WTAP (ENSPVAG00000005310) #21	SOD2 (ENSPVAG00000005302) #22
Microchiroptera	ANCESTRAL SPECIES	4	ENSGT00940000157330	ENSGT00390000011034 #7	ENSGT00950000182836.b.b.b.b #9	ENSGT00880000138034 #10	ENSGT00940000155208 #11	ENSGT00940000160810 #12	ENSGT00940000155089 #13	ENSGT00940000162065 #14	ENSGT00390000013943 #15	ENSGT01030000234639.A.a #16	ENSGT00940000153167.A.a #17	ENSGT00390000006394 #18	ENSGT00550000074878 #19	ENSGT01030000234626.B #20	ENSGT00390000013931.a.b.b #21	ENSGT00390000011877 #22	ENSGT00530000063558.B #23	ENSGT00940000157993 #24	ENSGT00390000004172 #25	ENSGT01090000260082.d.b #26	ENSGT00940000160610 #27	ENSGT00940000154531 #28	ENSGT00390000007183 #29	ENSGT00940000155913 #30	ENSGT00390000004028 #31	ENSGT00390000003560 #32	ENSGT00940000160715 #33	ENSGT00940000156557 #34	ENSGT00940000156483 #35	ENSGT00390000008642 #37	ENSGT00940000163242.b
Microbat	MODERN SPECIES	1439											PNLDC1 (ENSMLUG00000000747) #17	MRPL18 (ENSMLUG00000000743) #18	TCP1 (ENSMLUG00000000732) #19	ACAT2 (ENSMLUG00000000725) #20	WTAP (ENSMLUG00000000721) #21	SOD2 (ENSMLUG00000012242) #22	FNDC1 (ENSMLUG00000029080) #23	TAGAP (ENSMLUG00000012777) #24	RSPH3 (ENSMLUG00000012768) #25	ENSMLUG00000001931 #26
Greater horseshoe bat	DUPLICATION
Greater horseshoe bat	MODERN SPECIES	21	PRKN (ENSRFEG00010008431) #7	AGPAT4 (ENSRFEG00010008317) #9	MAP3K4 (ENSRFEG00010007347) #10	ENSRFEG00010007176 #11	SLC22A3 (ENSRFEG00010007045) #12	ENSRFEG00010007005	SLC22A2 (ENSRFEG00010006879) #13	SLC22A1 (ENSRFEG00010006710) #14	IGF2R (ENSRFEG00010006536) #15	MAS1 (ENSRFEG00010006507) #16	PNLDC1 (ENSRFEG00010006385) #17	MRPL18 (ENSRFEG00010006349) #18	ENSRFEG00010006182 #19	ACAT2 (ENSRFEG00010006101) #20	ENSRFEG00010006054 #21	SOD2 (ENSRFEG00010005963) #22	FNDC1 (ENSRFEG00010005884) #23	TAGAP (ENSRFEG00010005835) #24	RSPH3 (ENSRFEG00010005806) #25	EZR (ENSRFEG00010005668) #26	ENSRFEG00010005565 #27	ENSRFEG00010005541 #27	ENSRFEG00010005510 #28	ENSRFEG00010005488	TMEM181 (ENSRFEG00010005412) #29	TULP4 (ENSRFEG00010005329) #30	GTF2H5 (ENSRFEG00010005282) #31	SERAC1 (ENSRFEG00010020518) #32	SYNJ2 (ENSRFEG00010020202) #33	SNX9 (ENSRFEG00010020033) #34	ZDHHC14 (ENSRFEG00010019985) #35
Greater horseshoe bat	MODERN SPECIES	22	ENSRFEG00010000895	MED4 (ENSRFEG00010000908)	NUDT15 (ENSRFEG00010000941)	SUCLA2 (ENSRFEG00010000964)	HTR2A (ENSRFEG00010001008)	ENSRFEG00010001044	LRCH1 (ENSRFEG00010001090)	RUBCNL (ENSRFEG00010001205)	LRRC63 (ENSRFEG00010001264)	LCP1 (ENSRFEG00010001294)	CPB2 (ENSRFEG00010001341)	ENSRFEG00010001386	NHLRC3 (ENSRFEG00010001424)	PROSER1 (ENSRFEG00010001494)	STOML3 (ENSRFEG00010001548)	ENSRFEG00010001582 #22	FREM2 (ENSRFEG00010001609)	UFM1 (ENSRFEG00010001672)	TRPC4 (ENSRFEG00010001740)	POSTN (ENSRFEG00010001863)	ENSRFEG00010002000	SUPT20H (ENSRFEG00010002062)	EXOSC8 (ENSRFEG00010002172)	ALG5 (ENSRFEG00010002210)	SMAD9 (ENSRFEG00010002255)	RFXAP (ENSRFEG00010002291)	SERTM1 (ENSRFEG00010002306)	CCNA1 (ENSRFEG00010002318)	SPART (ENSRFEG00010002346)	CCDC169 (ENSRFEG00010002375)	SOHLH2 (ENSRFEG00010002418)