Mammalia	ANCESTRAL SPECIES	2	ENSGT00940000157671	ENSGT00940000161139 #8	ENSGT00390000011405 #9	ENSGT00950000182767.b.b ##10	ENSGT00950000182767.a #10	ENSGT00390000016465 #11	ENSGT00390000006681 #12	ENSGT00390000016736.b #13	ENSGT00940000157407 #14	ENSGT00940000162464	ENSGT00940000160410 #15	ENSGT00740000115684 #16	ENSGT00940000160090 #18	ENSGT00940000154784.D.a.b #19	ENSGT00940000153463.b #20	ENSGT00390000002970 #22	ENSGT00390000013448.a.a #23	ENSGT00570000079239 #24	ENSGT00950000182834.B #25	ENSGT00940000153634.b #26	ENSGT00950000182834.A.a.b.c #28	ENSGT00390000000412	ENSGT00940000165101	ENSGT00390000000417.a.a.b.a.b #30	ENSGT00940000157376 #31	ENSGT00390000018505 #32	ENSGT00390000002210.d #33	ENSGT00940000159576 #34	ENSGT00390000010056 #35	ENSGT00530000063402.b	ENSGT01100000263504.a.a
Theria	ANCESTRAL SPECIES	12	ENSGT00950000183093.C	ENSGT00940000157671	ENSGT00940000161139 #8	ENSGT00390000011405 #9	ENSGT00950000182767.a #10	ENSGT00390000016465 #11	ENSGT00390000006681 #12	ENSGT00390000016736.b #13	ENSGT00940000157407 #14	ENSGT00940000162464	ENSGT00940000160410 #15	ENSGT00740000115684 #16	ENSGT00940000160090 #18	ENSGT00940000154784.D.a.b #19	ENSGT00940000153463.b #20	ENSGT00390000002970 #22	ENSGT00390000013448.a.a #23	ENSGT00570000079239 #24	ENSGT00950000182834.B #25	ENSGT00940000153634.b #26	ENSGT00950000182834.A.a.b.c #28	ENSGT00390000000412	ENSGT00940000160505 #29	ENSGT00390000000417.a.a.b.a.b #30	ENSGT00940000157376 #31	ENSGT00390000018505 #32	ENSGT00390000002210.d #33	ENSGT00940000159576 #34	ENSGT00950000183044.a.a.a.c #36	ENSGT00390000010056 #35	ENSGT00530000063402.b
Eutheria	ANCESTRAL SPECIES		ENSGT00940000157671	ENSGT00940000161139 #8	ENSGT00390000011405 #9	ENSGT00950000182767.b.b.c.b.a ##10	ENSGT00950000182767.a.a #10	ENSGT00390000016465 #11	ENSGT00390000006681 #12	ENSGT00390000016736.b #13	ENSGT00940000157407 #14	ENSGT00940000162464	ENSGT00940000160410 #15	ENSGT00740000115684 #16	ENSGT00940000160090 #18	ENSGT00940000154784.D.a.b #19	ENSGT00940000153463.b #20	ENSGT00390000002970 #22	ENSGT00390000013448.a.a #23	ENSGT00570000079239 #24	ENSGT00950000182834.B #25	ENSGT00940000153634.b #26	ENSGT00950000182834.A.a.b.c #28	ENSGT00390000000412	ENSGT00940000160505 #29	ENSGT00390000000417.a.a.b.a.b #30	ENSGT00940000157376 #31	ENSGT00390000018505 #32	ENSGT00390000002210.d #33	ENSGT00940000159576 #34	ENSGT00950000183044.a.a.a.c #36	ENSGT00390000010056 #35	ENSGT00530000063402.b
Boreoeutheria	ANCESTRAL SPECIES		ENSGT00940000157671	ENSGT00940000161139 #8	ENSGT00390000011405 #9	ENSGT00950000182767.b.b.c.b.a ##10	ENSGT00950000182767.a.a #10	ENSGT00390000016465 #11	ENSGT00390000006681 #12	ENSGT00390000016736.b #13	ENSGT00940000157407 #14	ENSGT00940000162464	ENSGT00940000160410 #15	ENSGT00740000115684 #16	ENSGT00940000160090 #18	ENSGT00940000154784.D.a.b #19	ENSGT00940000153463.b #20	ENSGT00390000002970 #22	ENSGT00390000013448.a.a #23	ENSGT00570000079239 #24	ENSGT00950000182834.B #25	ENSGT00940000153634.b #26	ENSGT00950000182834.A.a.b.c #28	ENSGT00390000000412	ENSGT00940000160505 #29	ENSGT00390000000417.a.a.b.a.b #30	ENSGT00940000157376 #31	ENSGT00390000018505.b #32	ENSGT00390000002210.d #33	ENSGT00940000159576 #34	ENSGT00950000183044.a.a.a.c #36	ENSGT00390000010056 #35	ENSGT00530000063402.b
Euarchontoglires	ANCESTRAL SPECIES		ENSGT00950000183093.C	ENSGT00940000157671	ENSGT00940000161139 #8	ENSGT00390000011405 #9	ENSGT00950000182767.a.a #10	ENSGT00390000016465 #11	ENSGT00390000006681 #12	ENSGT00390000016736.b #13	ENSGT00940000157407 #14	ENSGT00940000162464	ENSGT00940000160410 #15	ENSGT00740000115684 #16	ENSGT00940000160090 #18	ENSGT00940000154784.D.a.b #19	ENSGT00940000153463.b #20	ENSGT00390000002970 #22	ENSGT00390000013448.a.a #23	ENSGT00570000079239 #24	ENSGT00950000182834.B #25	ENSGT00940000153634.b #26	ENSGT00950000182834.A.a.b.c #28	ENSGT00390000000412	ENSGT00940000160505 #29	ENSGT00390000000417.a.a.b.a.b #30	ENSGT00940000157376 #31	ENSGT00390000018505.b #32	ENSGT00390000002210.d #33	ENSGT00940000159576 #34	ENSGT00950000183044.a.a.a.c #36	ENSGT00390000010056 #35	ENSGT00530000063402.b
Primates	ANCESTRAL SPECIES	7	ENSGT00950000183093.C	ENSGT00940000157671	ENSGT00940000161139 #8	ENSGT00390000011405 #9	ENSGT00950000182767.a.a #10	ENSGT00390000016465 #11	ENSGT00390000006681 #12	ENSGT00390000016736.b #13	ENSGT00940000157407 #14	ENSGT00940000162464	ENSGT00940000160410 #15	ENSGT00740000115684 #16	ENSGT00940000160090 #18	ENSGT00940000154784.D.a.b #19	ENSGT00940000153463.b #20	ENSGT00390000002970 #22	ENSGT00390000013448.a.a #23	ENSGT00570000079239 #24	ENSGT00950000182834.B #25	ENSGT00940000153634.b #26	ENSGT00950000182834.A.a.b.c #28	ENSGT00390000000412	ENSGT00940000160505 #29	ENSGT00390000000417.a.a.b.a.b #30	ENSGT00940000157376 #31	ENSGT00390000018505.b #32	ENSGT00390000002210.d #33	ENSGT00940000159576 #34	ENSGT00950000183044.a.a.a.c #36	ENSGT00390000010056 #35	ENSGT00530000063402.b
Haplorrhini	ANCESTRAL SPECIES	7	ENSGT00950000183093.C	ENSGT00940000157671	ENSGT00940000161139 #8	ENSGT00390000011405 #9	ENSGT00950000182767.a.a #10	ENSGT00390000016465 #11	ENSGT00390000006681 #12	ENSGT00390000016736.b #13	ENSGT00940000157407 #14	ENSGT00940000162464	ENSGT00940000160410 #15	ENSGT00740000115684 #16	ENSGT00940000160090 #18	ENSGT00940000154784.D.a.b #19	ENSGT00940000153463.b #20	ENSGT00390000002970 #22	ENSGT00390000013448.a.a #23	ENSGT00570000079239 #24	ENSGT00950000182834.B #25	ENSGT00940000153634.b #26	ENSGT00950000182834.A.a.b.c #28	ENSGT00390000000412	ENSGT00940000160505 #29	ENSGT00390000000417.a.a.b.a.b #30	ENSGT00940000157376 #31	ENSGT00390000018505.b #32	ENSGT00390000002210.d #33	ENSGT00940000159576 #34	ENSGT00950000183044.a.a.a.c #36	ENSGT00390000010056 #35	ENSGT00530000063402.b
Simiiformes	ANCESTRAL SPECIES	8	ENSGT00910000147222	ENSGT00940000157671	ENSGT00940000161139 #8	ENSGT00390000011405 #9	ENSGT00950000182767.a.a #10	ENSGT00390000016465 #11	ENSGT00390000006681 #12	ENSGT00390000016736.b #13	ENSGT00940000157407 #14	ENSGT00940000162464	ENSGT00940000160410 #15	ENSGT00740000115684 #16	ENSGT00940000160090 #18	ENSGT00940000154784.D.a.b #19	ENSGT00940000153463.b #20	ENSGT00390000002970 #22	ENSGT00390000013448.a.a #23	ENSGT00570000079239 #24	ENSGT00950000182834.B #25	ENSGT00940000153634.b #26	ENSGT00950000182834.A.a.b.c #28	ENSGT00390000000412	ENSGT00940000160505 #29	ENSGT00390000000417.a.a.b.a.b #30	ENSGT00940000157376 #31	ENSGT00390000018505.b #32	ENSGT00390000002210.d #33	ENSGT00940000159576 #34	ENSGT00950000183044.a.a.a.c #36	ENSGT00390000010056 #35	ENSGT00530000063402.b
Catarrhini	ANCESTRAL SPECIES	10	ENSGT00910000147222	ENSGT00940000157671	ENSGT00940000161139 #8	ENSGT00390000011405 #9	ENSGT00950000182767.a.a #10	ENSGT00390000016465 #11	ENSGT00390000006681 #12	ENSGT00390000016736.b #13	ENSGT00940000157407 #14	ENSGT00940000162464	ENSGT00940000160410 #15	ENSGT00740000115684 #16	ENSGT00940000160090 #18	ENSGT00940000154784.D.a.b #19	ENSGT00940000153463.b #20	ENSGT00390000002970 #22	ENSGT00390000013448.a.a #23	ENSGT00570000079239 #24	ENSGT00950000182834.B #25	ENSGT00940000153634.b #26	ENSGT00940000153272.a.b.o.b.b #27	ENSGT00950000182834.A.a.b.c #28	ENSGT00390000000412	ENSGT00940000160505 #29	ENSGT00390000000417.a.a.b.a.b #30	ENSGT00940000157376 #31	ENSGT00390000018505.b #32	ENSGT00390000002210.d #33	ENSGT00940000159576 #34	ENSGT00950000183044.a.a.a.c #36	ENSGT00390000010056 #35
Cercopithecidae	ANCESTRAL SPECIES	20	ENSGT00390000002944.e.a.a.a.b #7	ENSGT00940000161139 #8	ENSGT00390000011405 #9	ENSGT00950000182767.a.a #10	ENSGT00390000016465 #11	ENSGT00390000006681 #12	ENSGT00390000016736.b #13	ENSGT00940000157407 #14	ENSGT00940000162464	ENSGT00940000160410 #15	ENSGT00740000115684 #16	ENSGT00940000160090 #18	ENSGT00940000154784.D.a.b #19	ENSGT00940000153463.b #20	ENSGT00390000018665.d #21	ENSGT00390000002970 #22	ENSGT00390000013448.a.a #23	ENSGT00570000079239 #24	ENSGT00950000182834.B #25	ENSGT00940000153634.b #26	ENSGT00940000153272.a.b.o.b.b #27	ENSGT00950000182834.A.a.b.c #28	ENSGT00390000000412	ENSGT00940000160505 #29	ENSGT00390000000417.a.a.b.a.b #30	ENSGT00940000157376 #31	ENSGT00390000018505.b #32	ENSGT00390000002210.d #33	ENSGT00940000159576 #34	ENSGT00390000010056.o #35	ENSGT00950000183044.a.a.a.c #36
Cercopithecinae	ANCESTRAL SPECIES	18	ENSGT00940000161139 #8	ENSGT00390000011405 #9	ENSGT00950000182767.a.a #10	ENSGT00390000016465 #11	ENSGT00390000006681 #12	ENSGT00390000016736.b #13	ENSGT00940000157407 #14	ENSGT00940000162464	ENSGT00940000160410 #15	ENSGT00740000115684 #16	ENSGT00390000015967.d #17	ENSGT00940000160090 #18	ENSGT00940000154784.D.a.b #19	ENSGT00940000153463.b #20	ENSGT00390000018665.d #21	ENSGT00390000002970 #22	ENSGT00390000013448.a.a #23	ENSGT00570000079239 #24	ENSGT00950000182834.B #25	ENSGT00940000153634.b #26	ENSGT00940000153272.a.b.o.b.b #27	ENSGT00950000182834.A.a.b.c #28	ENSGT00390000000412	ENSGT00940000160505 #29	ENSGT00390000000417.a.a.b.a.b #30	ENSGT00940000157376 #31	ENSGT00390000018505.b #32	ENSGT00390000002210.d #33	ENSGT00940000159576 #34	ENSGT00390000010056.o #35	ENSGT00950000183044.a.a.a.c #36
Cercopithecinae_a	ANCESTRAL SPECIES		ENSGT00940000161139 #8	ENSGT00390000011405 #9	ENSGT00950000182767.a.a #10	ENSGT00390000016465 #11	ENSGT00390000006681 #12	ENSGT00390000016736.b #13	ENSGT00940000157407 #14	ENSGT00940000162464	ENSGT00940000160410 #15	ENSGT00740000115684 #16	ENSGT00390000015967.d #17	ENSGT00940000160090 #18	ENSGT00940000154784.D.a.b #19	ENSGT00940000153463.b #20	ENSGT00390000018665.d #21	ENSGT00390000002970 #22	ENSGT00390000013448.a.a #23	ENSGT00570000079239 #24	ENSGT00950000182834.B #25	ENSGT00940000153634.b #26	ENSGT00940000153272.a.b.o.b.b #27	ENSGT00950000182834.A.a.b.c #28	ENSGT00390000000412	ENSGT00940000160505 #29	ENSGT00390000000417.a.a.b.a.b #30	ENSGT00940000157376 #31	ENSGT00390000018505.b #32	ENSGT00390000002210.d #33	ENSGT00940000159576 #34	ENSGT00390000010056.o #35	ENSGT00950000183044.a.a.a.c #36
Cercopithecinae_b	ANCESTRAL SPECIES	3	ENSGT00390000011405 #9	ENSGT00950000182767.a.a #10	ENSGT00390000016465 #11	ENSGT00390000006681 #12	ENSGT00390000016736.b #13	ENSGT00940000157407 #14	ENSGT00940000162464	ENSGT00940000160410 #15	ENSGT00740000115684 #16	ENSGT00390000015967.d #17	ENSGT00940000160090 #18	ENSGT00940000154784.D.a.b #19	ENSGT00940000153463.b #20	ENSGT00390000018665.d #21	ENSGT00390000010283.`b.a.a.d	ENSGT00390000002970 #22	ENSGT00390000013448.a.a #23	ENSGT00570000079239 #24	ENSGT00950000182834.B #25	ENSGT00940000153634.b #26	ENSGT00940000153272.a.b.o.b.b #27	ENSGT00950000182834.A.a.b.c #28	ENSGT00940000160505 #29	ENSGT00390000000417.a.a.b.a.b #30	ENSGT00940000157376 #31	ENSGT00390000018505.b #32	ENSGT00390000002210.d #33	ENSGT00940000159576 #34	ENSGT00390000010056.o #35	ENSGT00950000183044.a.a.a.c #36	ENSGT00390000010056.p #37
Cercopithecinae_d	ANCESTRAL SPECIES	67	ENSGT00940000161139 #8	ENSGT00390000011405 #9	ENSGT00950000182767.a.a #10	ENSGT00940000167697	ENSGT00390000006681 #12	ENSGT00390000016736.b #13	ENSGT00940000157407 #14	ENSGT00940000160410 #15	ENSGT00740000115684 #16	ENSGT00390000015967.d #17	ENSGT00940000160090 #18	ENSGT00940000154784.D.a.b #19	ENSGT00940000153463.b #20	ENSGT00390000018665.d #21	ENSGT00390000010283.`b.a.a.d	ENSGT00390000002970 #22	ENSGT00390000013448.a.a #23	ENSGT00570000079239 #24	ENSGT00950000182834.B #25	ENSGT00940000153634.b #26	ENSGT00940000153272.a.b.o.b.b #27	ENSGT00950000182834.A.a.b.c #28	ENSGT00940000160505 #29	ENSGT00390000000417.a.a.b.a.b #30	ENSGT00940000157376 #31	ENSGT00390000018505.b #32	ENSGT00390000002210.d #33	ENSGT00940000159576 #34	ENSGT00390000010056.o #35	ENSGT00950000183044.a.a.a.c #36	ENSGT00390000010056.p #37
Sooty mangabey	MODERN SPECIES	513	ENSCATG00000036390 #7	HHIPL2 (ENSCATG00000042853) #8	TAF1A (ENSCATG00000031447) #9	MIA3 (ENSCATG00000036058) #10	AIDA (ENSCATG00000018848) #11	BROX (ENSCATG00000041191) #12	FAM177B (ENSCATG00000038065) #13	DISP1 (ENSCATG00000031786) #14	SUSD4 (ENSCATG00000043227) #15	CCDC185 (ENSCATG00000038435) #16	ENSCATG00000039211 #17	CAPN8 (ENSCATG00000036644) #18	CAPN2 (ENSCATG00000031063) #19	TP53BP2 (ENSCATG00000045377) #20	ENSCATG00000014032 #21	FBXO28 (ENSCATG00000035652) #22	DEGS1 (ENSCATG00000045366) #23	NVL (ENSCATG00000040317) #24	CNIH4 (ENSCATG00000043768) #25	WDR26 (ENSCATG00000035046) #26	ENSCATG00000030513 #27	CNIH3 (ENSCATG00000042269) #28	DNAH14 (ENSCATG00000039957) #29	LBR (ENSCATG00000031289) #30	ENAH (ENSCATG00000006720) #31	SRP9 (ENSCATG00000041813) #32	EPHX1 (ENSCATG00000039564) #33	TMEM63A (ENSCATG00000039227) #34	ENSCATG00000019235 #35	PYCR2 (ENSCATG00000045074) #36	ENSCATG00000038680 #37
Drill	MODERN SPECIES	1368						BROX (ENSMLEG00000039424) #12	FAM177B (ENSMLEG00000033086) #13	DISP1 (ENSMLEG00000040296) #14	SUSD4 (ENSMLEG00000033336) #15	CCDC185 (ENSMLEG00000041964) #16	CAPN8 (ENSMLEG00000044021) #18	CAPN2 (ENSMLEG00000034708) #19	TP53BP2 (ENSMLEG00000041969) #20	ENSMLEG00000007017 #21	ENSMLEG00000006505	FBXO28 (ENSMLEG00000040966) #22	DEGS1 (ENSMLEG00000031144) #23	NVL (ENSMLEG00000043787) #24	CNIH4 (ENSMLEG00000031120) #25	WDR26 (ENSMLEG00000036104) #26	ENSMLEG00000036467 #27
Olive baboon	MODERN SPECIES		BROX (ENSPANG00000013754) #12	TAF1A (ENSPANG00000009886) #9	FAM177B (ENSPANG00000017950) #13	ENSPANG00000041435	DISP1 (ENSPANG00000009887) #14	TLR5 (ENSPANG00000016719)	ENSPANG00000045709	SUSD4 (ENSPANG00000003306) #15	CCDC185 (ENSPANG00000014102) #16	ENSPANG00000047048 #17	ENSPANG00000044476	CAPN8 (ENSPANG00000005933) #18	CAPN2 (ENSPANG00000020944) #19	TP53BP2 (ENSPANG00000016820) #20	ENSPANG00000017352	FBXO28 (ENSPANG00000035917) #22	DEGS1 (ENSPANG00000021909) #23	ENSPANG00000046984	NVL (ENSPANG00000008349) #24	CNIH4 (ENSPANG00000012290) #25	WDR26 (ENSPANG00000012516) #26	ENSPANG00000038502	ENSPANG00000030716 #27	CNIH3 (ENSPANG00000016366) #28	ENSPANG00000043776	LBR (ENSPANG00000006165) #30	ENAH (ENSPANG00000007502) #31	SRP9 (ENSPANG00000030164) #32	EPHX1 (ENSPANG00000014172) #33	TMEM63A (ENSPANG00000009888) #34	ENSPANG00000023521 #35
Macaca	ANCESTRAL SPECIES		ENSGT00940000161139 #8	ENSGT00390000011405 #9	ENSGT00950000182767.a.a #10	ENSGT00390000016465 #11	ENSGT00390000006681 #12	ENSGT00390000016736.b #13	ENSGT00940000157407 #14	ENSGT00940000162464	ENSGT00940000160410 #15	ENSGT00740000115684 #16	ENSGT00390000015564.qb.a	ENSGT00390000015967.d #17	ENSGT00940000160090 #18	ENSGT00940000154784.D.a.b #19	ENSGT00940000153463.b #20	ENSGT00390000002970 #22	ENSGT00390000013448.a.a #23	ENSGT00570000079239 #24	ENSGT00950000182834.B #25	ENSGT00940000153634.b #26	ENSGT00950000182834.A.a.b.c #28	ENSGT00390000000412	ENSGT00940000160505 #29	ENSGT00390000000417.a.a.b.a.b #30	ENSGT00940000157376 #31	ENSGT00390000018505.b #32	ENSGT00390000002210.d #33	ENSGT00940000159576 #34	ENSGT00390000010056.o #35	ENSGT00950000183044.a.a.a.c #36	ENSGT00390000010056.p #37
Pig-tailed macaque	MODERN SPECIES	102				DISP1 (ENSMNEG00000043654) #14	SUSD4 (ENSMNEG00000028108) #15	CCDC185 (ENSMNEG00000034238) #16	ENSMNEG00000016593	ENSMNEG00000022555 #17	CAPN8 (ENSMNEG00000027844) #18	CAPN2 (ENSMNEG00000035855) #19	TP53BP2 (ENSMNEG00000039539) #20	ENSMNEG00000030696	ENSMNEG00000037928 #21	ENSMNEG00000041225	ENSMNEG00000029327	FBXO28 (ENSMNEG00000034283) #22	DEGS1 (ENSMNEG00000028734) #23	NVL (ENSMNEG00000042774) #24	CNIH4 (ENSMNEG00000041190) #25	WDR26 (ENSMNEG00000031309) #26	CNIH3 (ENSMNEG00000035965) #28	ENSMNEG00000034880	ENSMNEG00000043544 #29	LBR (ENSMNEG00000008692) #30	ENAH (ENSMNEG00000033447) #31	SRP9 (ENSMNEG00000043512) #32	EPHX1 (ENSMNEG00000041552) #33	TMEM63A (ENSMNEG00000035779) #34	ENSMNEG00000035765 #35	PYCR2 (ENSMNEG00000033158) #36	ENSMNEG00000042256 #37
Macaca_a	ANCESTRAL SPECIES		ENSGT00940000161139 #8	ENSGT00390000011405 #9	ENSGT00950000182767.a.a #10	ENSGT00390000016465 #11	ENSGT00390000006681 #12	ENSGT00390000016736.b #13	ENSGT00940000157407 #14	ENSGT00940000162464	ENSGT00940000160410 #15	ENSGT00740000115684 #16	ENSGT00390000015564.qb.a	ENSGT00390000015967.d #17	ENSGT00940000160090 #18	ENSGT00940000154784.D.a.b #19	ENSGT00940000153463.b #20	ENSGT00390000002970 #22	ENSGT00390000013448.a.a #23	ENSGT00570000079239 #24	ENSGT00950000182834.B #25	ENSGT00940000153634.b #26	ENSGT00950000182834.A.a.b.c #28	ENSGT00940000160505 #29	ENSGT00390000000417.a.a.b.a.b #30	ENSGT00940000157376 #31	ENSGT00390000018505.b #32	ENSGT00940000173703	ENSGT00390000018505.a.a ##32	ENSGT00390000002210.d #33	ENSGT00940000159576 #34	ENSGT00390000010056.o #35	ENSGT00390000010056.p #37
Rhesus	MODERN SPECIES		MIA3 (ENSMMUG00000001021) #10	AIDA (ENSMMUG00000015025) #11	ENSMMUG00000061267	BROX (ENSMMUG00000015026) #12	FAM177B (ENSMMUG00000058808) #13	DISP1 (ENSMMUG00000005873) #14	ENSMMUG00000059632	ENSMMUG00000064564	TLR5 (ENSMMUG00000000870)	SUSD4 (ENSMMUG00000012695) #15	CCDC185 (ENSMMUG00000012698) #16	ENSMMUG00000041825	CAPN8 (ENSMMUG00000042038) #18	CAPN2 (ENSMMUG00000011142) #19	TP53BP2 (ENSMMUG00000011146) #20	FBXO28 (ENSMMUG00000000676) #22	DEGS1 (ENSMMUG00000002400) #23	NVL (ENSMMUG00000022510) #24	CNIH4 (ENSMMUG00000063959) #25	WDR26 (ENSMMUG00000012227) #26	CNIH3 (ENSMMUG00000010335) #28	ENSMMUG00000060677	ENSMMUG00000051471	LBR (ENSMMUG00000003472) #30	ENAH (ENSMMUG00000002227) #31	SRP9 (ENSMMUG00000000134) ##32	EPHX1 (ENSMMUG00000005782) #33	TMEM63A (ENSMMUG00000005785) #34	PYCR2 (ENSMMUG00000011434) #35	ENSMMUG00000011435 #37	ENSMMUG00000056097
Crab-eating macaque	MODERN SPECIES		HHIPL2 (ENSMFAG00000036732) #8	TAF1A (ENSMFAG00000039364) #9	MIA3 (ENSMFAG00000002094) #10	ENSMFAG00000002217 #11	BROX (ENSMFAG00000000410) #12	FAM177B (ENSMFAG00000032058) #13	DISP1 (ENSMFAG00000033892) #14	TLR5 (ENSMFAG00000029363)	SUSD4 (ENSMFAG00000043811) #15	CCDC185 (ENSMFAG00000045104) #16	ENSMFAG00000034450	ENSMFAG00000039325 #17	CAPN8 (ENSMFAG00000042857) #18	CAPN2 (ENSMFAG00000003091) #19	ENSMFAG00000003807 #20	FBXO28 (ENSMFAG00000000604) #22	DEGS1 (ENSMFAG00000039054) #23	NVL (ENSMFAG00000003164) #24	CNIH4 (ENSMFAG00000003700) #25	WDR26 (ENSMFAG00000036710) #26	CNIH3 (ENSMFAG00000039040) #28	DNAH14 (ENSMFAG00000036618) #29	LBR (ENSMFAG00000034066) #30	ENAH (ENSMFAG00000019058) #31	SRP9 (ENSMFAG00000002641) #32	ENSMFAG00000051570	ENSMFAG00000039504 #37	ENSMFAG00000031760 #36	SDE2 (ENSMFAG00000031291)	ENSMFAG00000045269	ENSMFAG00000050027
Vervet Monkey	MODERN SPECIES	17	TAF1A (ENSCSAG00000015887) #9	MIA3 (ENSCSAG00000015943) #10	AIDA (ENSCSAG00000015981) #11	BROX (ENSCSAG00000015994) #12	FAM177B (ENSCSAG00000015998) #13	ENSCSAG00000016004 #14	ENSCSAG00000016009 #14	TLR5 (ENSCSAG00000000265)	SUSD4 (ENSCSAG00000016027) #15	CCDC185 (ENSCSAG00000000266) #16	ENSCSAG00000000267 #17	CAPN8 (ENSCSAG00000016122) #18	CAPN2 (ENSCSAG00000016150) #19	TP53BP2 (ENSCSAG00000016157) #20	ENSCSAG00000000268 #21	FBXO28 (ENSCSAG00000016176) #22	DEGS1 (ENSCSAG00000016186) #23	NVL (ENSCSAG00000016196) #24	CNIH4 (ENSCSAG00000016201) #25	WDR26 (ENSCSAG00000016208) #26	CNIH3 (ENSCSAG00000016214) #28	ENSCSAG00000016221	LBR (ENSCSAG00000016260) #30	ENAH (ENSCSAG00000016274) #31	EPHX1 (ENSCSAG00000016278) #33	TMEM63A (ENSCSAG00000016284) #34	ENSCSAG00000016291 #35	PYCR2 (ENSCSAG00000016314) #36	ENSCSAG00000016323 #37	SDE2 (ENSCSAG00000016332)	ACBD3 (ENSCSAG00000016340)
Rhinopithecus	ANCESTRAL SPECIES	237	ENSGT00390000009391.a	ENSGT00940000154672.t.a	ENSGT00390000010773	ENSGT00390000003125.i.a	ENSGT00940000158241	ENSGT00390000016465 #11	ENSGT00390000006681 #12	ENSGT00390000016736.b #13	ENSGT00940000157407 #14	ENSGT00940000160410 #15	ENSGT00740000115684 #16	ENSGT00940000160090 #18	ENSGT00940000154784.D.a.b #19	ENSGT00940000153463.b #20	ENSGT00390000018665.d #21	ENSGT00390000002970 #22	ENSGT00390000013448.a.a #23	ENSGT00570000079239.v #24	ENSGT00950000182834.B #25	ENSGT00940000153634.b #26	ENSGT00940000153272.a.b.o.b.b #27
Golden snub-nosed monkey	MODERN SPECIES	2338													CAPN2 (ENSRROG00000002899) #19	TP53BP2 (ENSRROG00000031613) #20	ENSRROG00000027723 #21	FBXO28 (ENSRROG00000034108) #22	DEGS1 (ENSRROG00000017054) #23	ENSRROG00000039168 #24	CNIH4 (ENSRROG00000045619) #25	WDR26 (ENSRROG00000033632) #26	ENSRROG00000012582 #27
Black snub-nosed monkey	MODERN SPECIES	305	DUSP10 (ENSRBIG00000037579)	ENSRBIG00000037388 #7	HHIPL2 (ENSRBIG00000040993) #8	TAF1A (ENSRBIG00000033404) #9	MIA3 (ENSRBIG00000033779) #10	ENSRBIG00000039759 #11	BROX (ENSRBIG00000002982) #12	FAM177B (ENSRBIG00000032487) #13	DISP1 (ENSRBIG00000032589) #14	SUSD4 (ENSRBIG00000043497) #15	CCDC185 (ENSRBIG00000038708) #16	CAPN8 (ENSRBIG00000038782) #18	CAPN2 (ENSRBIG00000035880) #19	TP53BP2 (ENSRBIG00000041319) #20	ENSRBIG00000038801 #21	FBXO28 (ENSRBIG00000035775) #22	DEGS1 (ENSRBIG00000033249) #23	ENSRBIG00000032861 #24	CNIH4 (ENSRBIG00000029391) #25	WDR26 (ENSRBIG00000029936) #26	ENSRBIG00000039437 #27
Hominoidea	ANCESTRAL SPECIES	7	ENSGT00950000183093.C	ENSGT00940000157671	ENSGT00940000161139 #8	ENSGT00390000011405 #9	ENSGT00950000182767.a.a #10	ENSGT00390000016465 #11	ENSGT00390000006681 #12	ENSGT00390000016736.b #13	ENSGT00940000157407 #14	ENSGT00940000162464	ENSGT00940000160410 #15	ENSGT00740000115684 #16	ENSGT00940000160090 #18	ENSGT00940000154784.D.a.b #19	ENSGT00940000153463.b #20	ENSGT00390000002970 #22	ENSGT00390000013448.a.a #23	ENSGT00570000079239 #24	ENSGT00950000182834.B #25	ENSGT00940000153634.b #26	ENSGT00940000153272.a.b.o.b.b #27	ENSGT00950000182834.A.a.b.c #28	ENSGT00390000000412	ENSGT00940000160505 #29	ENSGT00390000000417.a.a.b.a.b #30	ENSGT00940000157376 #31	ENSGT00390000018505.b #32	ENSGT00390000002210.d #33	ENSGT00940000159576 #34	ENSGT00390000010056.q.b #35	ENSGT00950000183044.a.a.a.c #36
Gibbon	MODERN SPECIES	20	MTARC2 (ENSNLEG00000013794)	MTARC1 (ENSNLEG00000013779)	HLX (ENSNLEG00000013773)	DUSP10 (ENSNLEG00000035713)	HHIPL2 (ENSNLEG00000013732) #8	TAF1A (ENSNLEG00000013687) #9	MIA3 (ENSNLEG00000013613) #10	AIDA (ENSNLEG00000013583) #11	BROX (ENSNLEG00000013533) #12	FAM177B (ENSNLEG00000028293) #13	DISP1 (ENSNLEG00000013511) #14	SUSD4 (ENSNLEG00000000441) #15	CAPN8 (ENSNLEG00000013334) #18	CAPN2 (ENSNLEG00000013341) #19	TP53BP2 (ENSNLEG00000013377) #20	FBXO28 (ENSNLEG00000013415) #22	DEGS1 (ENSNLEG00000013432) #23	NVL (ENSNLEG00000013437) #24	ENSNLEG00000032458 #25	WDR26 (ENSNLEG00000013555) #26	ENSNLEG00000033301 #27	CNIH3 (ENSNLEG00000032625) #28	ENSNLEG00000013644	LBR (ENSNLEG00000027476) #30	ENSNLEG00000013693 #31	SRP9 (ENSNLEG00000013740) #32	EPHX1 (ENSNLEG00000013747) #33	TMEM63A (ENSNLEG00000013755) #34	LEFTY1 (ENSNLEG00000036199) #35	PYCR2 (ENSNLEG00000026763) #36	ENSNLEG00000013769 #35
Hominidae	ANCESTRAL SPECIES	6	ENSGT00950000183093.C	ENSGT00940000157671	ENSGT00940000161139 #8	ENSGT00390000011405 #9	ENSGT00950000182767.a.a #10	ENSGT00390000016465 #11	ENSGT00390000006681 #12	ENSGT00390000016736.b #13	ENSGT00940000157407 #14	ENSGT00940000162464	ENSGT00940000160410 #15	ENSGT00740000115684 #16	ENSGT00940000160090 #18	ENSGT00940000154784.D.a.b #19	ENSGT00940000153463.b #20	ENSGT00390000002970 #22	ENSGT00390000013448.a.a #23	ENSGT00570000079239 #24	ENSGT00950000182834.B #25	ENSGT00940000153634.b #26	ENSGT00950000182834.A.a.b.c #28	ENSGT00390000000412	ENSGT00940000160505 #29	ENSGT00390000000417.a.a.b.a.b #30	ENSGT00940000157376 #31	ENSGT00390000018505.b #32	ENSGT00390000002210.d #33	ENSGT00940000159576 #34	ENSGT00390000010056.q.b #35	ENSGT00950000183044.a.a.a.c #36	ENSGT00390000010056.q.a #35
Orangutan	MODERN SPECIES		HLX (ENSPPYG00000000202)	DUSP10 (ENSPPYG00000000200)	HHIPL2 (ENSPPYG00000000199) #8	TAF1A (ENSPPYG00000000198) #9	MIA3 (ENSPPYG00000000197) #10	AIDA (ENSPPYG00000000196) #11	BROX (ENSPPYG00000000195) #12	FAM177B (ENSPPYG00000000194) #13	DISP1 (ENSPPYG00000000192) #14	TLR5 (ENSPPYG00000000191)	SUSD4 (ENSPPYG00000000190) #15	CCDC185 (ENSPPYG00000000189) #16	CAPN8 (ENSPPYG00000000188) #18	CAPN2 (ENSPPYG00000000187) #19	TP53BP2 (ENSPPYG00000000186) #20	FBXO28 (ENSPPYG00000000185) #22	DEGS1 (ENSPPYG00000010649) #23	NVL (ENSPPYG00000000184) #24	CNIH4 (ENSPPYG00000040381) #25	WDR26 (ENSPPYG00000000182) #26	ENSPPYG00000002704	CNIH3 (ENSPPYG00000000181) #28	DNAH14 (ENSPPYG00000039314) #29	LBR (ENSPPYG00000000176) #30	ENSPPYG00000000175 #31	SRP9 (ENSPPYG00000000174) #32	ENSPPYG00000000173 #33	EPHX1 (ENSPPYG00000039616) #33	TMEM63A (ENSPPYG00000029911) #34	LEFTY1 (ENSPPYG00000033926) #35	PYCR2 (ENSPPYG00000000171) #36
Homo/Pan/Gorilla group	DUPLICATION
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	6	ENSGT00940000161139 #8	ENSGT00390000011405 #9	ENSGT00950000182767.a.a #10	ENSGT00390000016465 #11	ENSGT00390000006681 #12	ENSGT00390000016736.b #13	ENSGT00940000157407 #14	ENSGT00940000162464	ENSGT00940000160410 #15	ENSGT00740000115684 #16	ENSGT00940000160090 #18	ENSGT00940000154784.D.a.b #19	ENSGT00940000153463.b #20	ENSGT00950000183070.a.b.g.b.b.a.a	ENSGT00950000182960.a.a.a.a.b.rb.w.a	ENSGT00390000002970.q #22	ENSGT00390000003465.b.b.o.b	ENSGT00390000013448.a.a #23	ENSGT00570000079239 #24	ENSGT00950000182834.B #25	ENSGT00940000153634.b #26	ENSGT00950000182834.A.a.b.c #28	ENSGT00390000000412	ENSGT00940000160505 #29	ENSGT00390000000417.a.a.b.a.b #30	ENSGT00940000157376 #31	ENSGT00390000018505.b #32	ENSGT00390000002210.d #33	ENSGT00940000159576 #34	ENSGT00390000010056.q.b #35	ENSGT00950000183044.a.a.a.c #36
Gorilla	MODERN SPECIES		HHIPL2 (ENSGGOG00000001182) #8	TAF1A (ENSGGOG00000001183) #9	MIA3 (ENSGGOG00000015271) #10	ENSGGOG00000037338	AIDA (ENSGGOG00000015289) #11	BROX (ENSGGOG00000000636) #12	FAM177B (ENSGGOG00000017105) #13	DISP1 (ENSGGOG00000000786) #14	SUSD4 (ENSGGOG00000003026) #15	CCDC185 (ENSGGOG00000006997) #16	CAPN8 (ENSGGOG00000034990) #18	CAPN2 (ENSGGOG00000008027) #19	TP53BP2 (ENSGGOG00000003787) #20	ENSGGOG00000036408	ENSGGOG00000036743	FBXO28 (ENSGGOG00000010974) #22	ENSGGOG00000027698	DEGS1 (ENSGGOG00000009270) #23	NVL (ENSGGOG00000034871) #24	ENSGGOG00000038475	CNIH4 (ENSGGOG00000005708) #25	WDR26 (ENSGGOG00000008231) #26	CNIH3 (ENSGGOG00000000242) #28	DNAH14 (ENSGGOG00000040408)	ENSGGOG00000040109 #29	LBR (ENSGGOG00000015250) #30	ENSGGOG00000022660 #31	SRP9 (ENSGGOG00000011555) #32	EPHX1 (ENSGGOG00000000859) #33	TMEM63A (ENSGGOG00000000862) #34	LEFTY1 (ENSGGOG00000038788) #35
Homo/Pan group	ANCESTRAL SPECIES	7	ENSGT00940000161139 #8	ENSGT00390000011405 #9	ENSGT00950000182767.a.a #10	ENSGT00390000016465 #11	ENSGT00390000006681 #12	ENSGT00390000016736.b #13	ENSGT00940000157407 #14	ENSGT00940000162464	ENSGT00940000160410 #15	ENSGT00740000115684 #16	ENSGT00940000160090 #18	ENSGT00940000154784.D.a.b #19	ENSGT00940000153463.b #20	ENSGT00950000183070.a.b.g.b.b.a.a	ENSGT00950000182960.a.a.a.a.b.rb.w.a	ENSGT00390000002970.q #22	ENSGT00390000003465.b.b.o.b	ENSGT00390000013448.a.a #23	ENSGT00570000079239 #24	ENSGT00950000182834.B #25	ENSGT00940000153634.b #26	ENSGT00950000182834.A.a.b.c #28	ENSGT00940000160505 #29	ENSGT00390000000417.a.a.b.a.b #30	ENSGT00940000157376 #31	ENSGT00390000018505.b #32	ENSGT00390000002210.d #33	ENSGT00940000159576 #34	ENSGT00390000010056.q.b #35	ENSGT00950000183044.a.a.a.c #36	ENSGT00390000010056.q.a #35
Human	MODERN SPECIES		HLX (ENSG00000136630)	DUSP10 (ENSG00000143507)	HHIPL2 (ENSG00000143512) #8	TAF1A (ENSG00000143498) #9	MIA3 (ENSG00000154305) #10	AIDA (ENSG00000186063) #11	BROX (ENSG00000162819) #12	FAM177B (ENSG00000197520) #13	DISP1 (ENSG00000154309) #14	TLR5 (ENSG00000187554)	SUSD4 (ENSG00000143502) #15	CCDC185 (ENSG00000178395) #16	CAPN8 (ENSG00000203697) #18	CAPN2 (ENSG00000162909) #19	TP53BP2 (ENSG00000143514) #20	FBXO28 (ENSG00000143756) #22	DEGS1 (ENSG00000143753) #23	NVL (ENSG00000143748) #24	CNIH4 (ENSG00000143771) #25	WDR26 (ENSG00000162923) #26	CNIH3 (ENSG00000143786) #28	DNAH14 (ENSG00000185842) #29	LBR (ENSG00000143815) #30	ENAH (ENSG00000154380) #31	SRP9 (ENSG00000143742) #32	EPHX1 (ENSG00000143819) #33	TMEM63A (ENSG00000196187) #34	LEFTY1 (ENSG00000243709) #35	ENSG00000255835	PYCR2 (ENSG00000143811) #36	LEFTY2 (ENSG00000143768) #35
Pan	ANCESTRAL SPECIES		ENSGT00940000161139 #8	ENSGT00390000011405 #9	ENSGT00950000182767.a.a #10	ENSGT00390000016465 #11	ENSGT00390000006681 #12	ENSGT00390000016736.b #13	ENSGT00940000157407 #14	ENSGT00940000162464	ENSGT00940000160410 #15	ENSGT00740000115684 #16	ENSGT00940000160090 #18	ENSGT00940000154784.D.a.b #19	ENSGT00940000153463.b #20	ENSGT00950000183070.a.b.g.b.b.a.a	ENSGT00950000182960.a.a.a.a.b.rb.w.a	ENSGT00390000002970.q #22	ENSGT00390000003465.b.b.o.b	ENSGT00390000013448.a.a #23	ENSGT00570000079239 #24	ENSGT00950000182834.B #25	ENSGT00940000153634.b #26	ENSGT00950000182834.A.a.b.c #28	ENSGT00940000160505 #29	ENSGT00390000000417.a.a.b.a.b #30	ENSGT00940000157376 #31	ENSGT00390000018505.b #32	ENSGT00390000002210.d #33	ENSGT00940000159576 #34	ENSGT00390000010056.q.b #35	ENSGT00950000183044.a.a.a.c #36	ENSGT00390000010056.q.a #35
Chimpanzee	MODERN SPECIES		TAF1A (ENSPTRG00000002007) #9	MIA3 (ENSPTRG00000052232) #10	ENSPTRG00000052614	AIDA (ENSPTRG00000002010) #11	BROX (ENSPTRG00000002012) #12	FAM177B (ENSPTRG00000023862) #13	DISP1 (ENSPTRG00000002013) #14	TLR5 (ENSPTRG00000030151)	SUSD4 (ENSPTRG00000002014) #15	CCDC185 (ENSPTRG00000002015) #16	CAPN8 (ENSPTRG00000043346) #18	CAPN2 (ENSPTRG00000002016) #19	TP53BP2 (ENSPTRG00000002017) #20	ENSPTRG00000050115	ENSPTRG00000051447	FBXO28 (ENSPTRG00000002021) #22	ENSPTRG00000020477	DEGS1 (ENSPTRG00000002023) #23	NVL (ENSPTRG00000046422) #24	CNIH4 (ENSPTRG00000002025) #25	WDR26 (ENSPTRG00000002026) #26	CNIH3 (ENSPTRG00000002027) #28	DNAH14 (ENSPTRG00000050408) #29	LBR (ENSPTRG00000002036) #30	ENAH (ENSPTRG00000002037) #31	SRP9 (ENSPTRG00000002038) #32	EPHX1 (ENSPTRG00000002039) #33	TMEM63A (ENSPTRG00000002040) #34	LEFTY1 (ENSPTRG00000049763) #35	PYCR2 (ENSPTRG00000002042) #36	LEFTY2 (ENSPTRG00000002043) #35
Bonobo	MODERN SPECIES		TAF1A (ENSPPAG00000038647) #9	MIA3 (ENSPPAG00000034682) #10	ENSPPAG00000034603	ENSPPAG00000034152	BROX (ENSPPAG00000039244) #12	FAM177B (ENSPPAG00000043057) #13	DISP1 (ENSPPAG00000017626) #14	TLR5 (ENSPPAG00000008829)	SUSD4 (ENSPPAG00000034494) #15	CCDC185 (ENSPPAG00000000314) #16	CAPN8 (ENSPPAG00000035387) #18	CAPN2 (ENSPPAG00000035401) #19	TP53BP2 (ENSPPAG00000042237) #20	ENSPPAG00000028543	ENSPPAG00000029629	FBXO28 (ENSPPAG00000034613) #22	ENSPPAG00000005299	DEGS1 (ENSPPAG00000033472) #23	NVL (ENSPPAG00000030596) #24	CNIH4 (ENSPPAG00000037258) #25	WDR26 (ENSPPAG00000030839) #26	CNIH3 (ENSPPAG00000041930) #28	DNAH14 (ENSPPAG00000033548) #29	LBR (ENSPPAG00000029928) #30	ENSPPAG00000027545 #31	SRP9 (ENSPPAG00000042680) #32	EPHX1 (ENSPPAG00000037369) #33	TMEM63A (ENSPPAG00000035003) #34	LEFTY1 (ENSPPAG00000031732) #35	PYCR2 (ENSPPAG00000029624) #36	LEFTY2 (ENSPPAG00000029951) #35
Homo/Pan/Gorilla group	ANCESTRAL SPECIES																	ENSGT00390000002970.r #22
Gorilla	MODERN SPECIES	18	ENSGGOG00000037533	SNCAIP (ENSGGOG00000015443)	ENSGGOG00000041793	ZNF474 (ENSGGOG00000008193)	LOX (ENSGGOG00000024751)	SRFBP1 (ENSGGOG00000007725)	FTMT (ENSGGOG00000001510)	PRR16 (ENSGGOG00000016737)	ENSGGOG00000027672	FAM170A (ENSGGOG00000009985)	HSD17B4 (ENSGGOG00000002010)	TNFAIP8 (ENSGGOG00000002982)	DMXL1 (ENSGGOG00000016805)	ENSGGOG00000041810	DTWD2 (ENSGGOG00000009599)	FBXO28 (ENSGGOG00000040232) #22	ENSGGOG00000006258	ENSGGOG00000041499	SEMA6A (ENSGGOG00000023232)	ENSGGOG00000041175	COMMD10 (ENSGGOG00000007326)	ARL14EPL (ENSGGOG00000022597)	LVRN (ENSGGOG00000007311)	AP3S1 (ENSGGOG00000016895)	ENSGGOG00000041345	CDO1 (ENSGGOG00000016315)	TICAM2 (ENSGGOG00000028318)	FEM1C (ENSGGOG00000007224)	ENSGGOG00000014116	CCDC112 (ENSGGOG00000001120)	PGGT1B (ENSGGOG00000001117)
Platyrrhini	ANCESTRAL SPECIES	24	ENSGT00910000147222	ENSGT00940000157671	ENSGT00940000161139 #8	ENSGT00390000011405 #9	ENSGT00950000182767.a.a #10	ENSGT00390000008783.m.b	ENSGT00390000016465 #11	ENSGT00390000006681 #12	ENSGT00390000016736.b #13	ENSGT00940000157407 #14	ENSGT00940000162464	ENSGT00940000160410 #15	ENSGT00940000160090 #18	ENSGT00940000154784.D.a.b #19	ENSGT00940000153463.b #20	ENSGT00390000002970 #22	ENSGT00390000013448.a.a #23	ENSGT00570000079239 #24	ENSGT00950000182834.B #25	ENSGT00940000153634.b #26	ENSGT00950000182834.A.a.b.c #28	ENSGT00940000160505 #29	ENSGT00390000000417.a.a.b.a.b #30	ENSGT00940000157376 #31	ENSGT00390000018505.b #32	ENSGT00390000002210.d #33	ENSGT00940000159576 #34	ENSGT00950000183044.a.a.a.c #36	ENSGT00390000010056 #35	ENSGT00530000063402.b	ENSGT01100000263504.a.a.yb.n
Cebidae	DUPLICATION
Cebidae	DUPLICATION
Cebidae	ANCESTRAL SPECIES	23	ENSGT00950000183093.C	ENSGT00940000157671	ENSGT00940000161139 #8	ENSGT00390000011405 #9	ENSGT00950000182767.a.a #10	ENSGT00390000008783.m.b	ENSGT00390000016465 #11	ENSGT00390000006681 #12	ENSGT00390000016736.b #13	ENSGT00940000157407 #14	ENSGT00940000162464	ENSGT00940000160410 #15	ENSGT00940000160090 #18	ENSGT00940000154784.D.a.b #19	ENSGT00940000153463.b #20	ENSGT00390000002970.s.a #22	ENSGT00390000013448.a.a #23	ENSGT00570000079239 #24	ENSGT00950000182834.B #25	ENSGT00940000153634.b #26	ENSGT00950000182834.A.a.b.c #28	ENSGT00940000160505 #29	ENSGT00390000000417.a.a.b.a.b #30	ENSGT00940000157376 #31	ENSGT00390000018505.b #32	ENSGT00390000002210.d #33	ENSGT00940000159576 #34	ENSGT00390000010056.l #35	ENSGT00950000183044.a.a.a.c #36	ENSGT00390000010056.k #35	ENSGT00530000063402.b
Cebidae_a	ANCESTRAL SPECIES	11	ENSGT00950000183093.C	ENSGT00940000157671	ENSGT00940000161139 #8	ENSGT00390000011405 #9	ENSGT00950000182767.a.a.l #10	ENSGT00390000008783.m.b.b	ENSGT00390000016465 #11	ENSGT00390000006681 #12	ENSGT00390000016736.b #13	ENSGT00940000157407 #14	ENSGT00940000162464	ENSGT00940000160410 #15	ENSGT00940000160090 #18	ENSGT00940000154784.D.a.b #19	ENSGT00940000153463.b #20	ENSGT00390000002970.s.a #22	ENSGT00390000013448.a.a #23	ENSGT00570000079239 #24	ENSGT00950000182834.B #25	ENSGT00940000153634.b #26	ENSGT00950000182834.A.a.b.c #28	ENSGT00940000160505 #29	ENSGT00390000000417.a.a.b.a.b #30	ENSGT00940000157376 #31	ENSGT00390000018505.b #32	ENSGT00390000002210.d #33	ENSGT00940000159576 #34	ENSGT00390000010056.l #35	ENSGT00950000183044.a.a.a.c #36	ENSGT00390000010056.k #35	ENSGT00530000063402.b
Bolivian squirrel monkey	MODERN SPECIES	79	MTARC2 (ENSSBOG00000027975)	MTARC1 (ENSSBOG00000026747)	HLX (ENSSBOG00000019831)	DUSP10 (ENSSBOG00000027947)	HHIPL2 (ENSSBOG00000019913) #8	TAF1A (ENSSBOG00000035027) #9	ENSSBOG00000028739 #10	AIDA (ENSSBOG00000025417) #11	BROX (ENSSBOG00000025185) #12	FAM177B (ENSSBOG00000024230) #13	DISP1 (ENSSBOG00000031918) #14	SUSD4 (ENSSBOG00000033888) #15	CAPN8 (ENSSBOG00000020907) #18	CAPN2 (ENSSBOG00000035305) #19	TP53BP2 (ENSSBOG00000023321) #20	ENSSBOG00000036116 #22	DEGS1 (ENSSBOG00000031189) #23	ENSSBOG00000019803	NVL (ENSSBOG00000034666) #24	CNIH4 (ENSSBOG00000031048) #25	WDR26 (ENSSBOG00000031377) #26	CNIH3 (ENSSBOG00000028177) #28	ENSSBOG00000026740	ENSSBOG00000030414	ENSSBOG00000028635 ##7	DNAH14 (ENSSBOG00000027125) #29	LBR (ENSSBOG00000032928) #30	ENAH (ENSSBOG00000032372) #31	SRP9 (ENSSBOG00000034573) #32	EPHX1 (ENSSBOG00000019277) #33	TMEM63A (ENSSBOG00000034751) #34
Marmoset	MODERN SPECIES	10	C1orf115 (ENSCJAG00000083600)	MTARC1 (ENSCJAG00000006146)	DUSP10 (ENSCJAG00000006086)	ENSCJAG00000060576	HHIPL2 (ENSCJAG00000009309) #8	MIA3 (ENSCJAG00000061628) #10	AIDA (ENSCJAG00000079237) #11	BROX (ENSCJAG00000006530) #12	ENSCJAG00000082431 #13	DISP1 (ENSCJAG00000006594) #14	TLR5 (ENSCJAG00000022060)	SUSD4 (ENSCJAG00000013871) #15	CAPN8 (ENSCJAG00000008270) #18	CAPN2 (ENSCJAG00000008168) #19	TP53BP2 (ENSCJAG00000008144) #20	FBXO28 (ENSCJAG00000048559) #22	DEGS1 (ENSCJAG00000045673) #23	NVL (ENSCJAG00000008031) #24	CNIH4 (ENSCJAG00000038880) #25	WDR26 (ENSCJAG00000007937) #26	CNIH3 (ENSCJAG00000007929) #28
Cebidae	ANCESTRAL SPECIES																	ENSGT00390000002970.s.b #22
Cebidae_a	ANCESTRAL SPECIES																	ENSGT00390000002970.s.b #22
Bolivian squirrel monkey	MODERN SPECIES	76															ENSSBOG00000025086	ENSSBOG00000025380 #22	SOCS2 (ENSSBOG00000026935)	CRADD (ENSSBOG00000035932)	ENSSBOG00000033402	PLXNC1 (ENSSBOG00000034558)	CEP83 (ENSSBOG00000019512)	ENSSBOG00000023873	TMCC3 (ENSSBOG00000021120)	ENSSBOG00000036052	ENSSBOG00000026305	NR2C1 (ENSSBOG00000027345)	FGD6 (ENSSBOG00000023435)	VEZT (ENSSBOG00000025742)	METAP2 (ENSSBOG00000020444)	USP44 (ENSSBOG00000033632)	NTN4 (ENSSBOG00000028448)
Cebidae	ANCESTRAL SPECIES																	ENSGT00390000002970.t #22
Cebidae_a	ANCESTRAL SPECIES																	ENSGT00390000002970.t #22
Capuchin	MODERN SPECIES	42	ENSCCAG00000020609	DUSP10 (ENSCCAG00000026878)	HHIPL2 (ENSCCAG00000028953) #8	TAF1A (ENSCCAG00000036518) #9	ENSCCAG00000020382 #10	ENSCCAG00000033801	AIDA (ENSCCAG00000036949) #11	BROX (ENSCCAG00000017416) #12	FAM177B (ENSCCAG00000031878) #13	DISP1 (ENSCCAG00000035391) #14	TLR5 (ENSCCAG00000034906)	SUSD4 (ENSCCAG00000002755) #15	CAPN8 (ENSCCAG00000030926) #18	CAPN2 (ENSCCAG00000021862) #19	TP53BP2 (ENSCCAG00000029817) #20	FBXO28 (ENSCCAG00000019791) #22	DEGS1 (ENSCCAG00000037018) #23	NVL (ENSCCAG00000037416) #24	CNIH4 (ENSCCAG00000037449) #25	WDR26 (ENSCCAG00000035904) #26	CNIH3 (ENSCCAG00000018443) #28	ENSCCAG00000023109	DNAH14 (ENSCCAG00000023187) #29	ENSCCAG00000017821	LBR (ENSCCAG00000018433) #30	ENAH (ENSCCAG00000026712) #31	ENSCCAG00000025068	SRP9 (ENSCCAG00000034464) #32	EPHX1 (ENSCCAG00000024699) #33	TMEM63A (ENSCCAG00000022581) #34	ENSCCAG00000030395 #35
Mas night monkey	MODERN SPECIES	958	ENSANAG00000036000	DUSP10 (ENSANAG00000028459)	HHIPL2 (ENSANAG00000019716) #8	TAF1A (ENSANAG00000020382) #9	ENSANAG00000034113	MIA3 (ENSANAG00000032600) #10	AIDA (ENSANAG00000020176) #11	BROX (ENSANAG00000020200) #12	FAM177B (ENSANAG00000037064) #13	DISP1 (ENSANAG00000026382) #14	SUSD4 (ENSANAG00000025295) #15	CAPN8 (ENSANAG00000019551) #18	CAPN2 (ENSANAG00000035954) #19	TP53BP2 (ENSANAG00000020481) #20	ENSANAG00000028033	FBXO28 (ENSANAG00000023391) #22	DEGS1 (ENSANAG00000027303) #23	NVL (ENSANAG00000026330) #24	ENSANAG00000015743	CNIH4 (ENSANAG00000022995) #25	WDR26 (ENSANAG00000028722) #26	ENSANAG00000017155	CNIH3 (ENSANAG00000035993) #28	ENSANAG00000029822	ENSANAG00000037634 #29	LBR (ENSANAG00000021538) #30	ENSANAG00000027368 #31	SRP9 (ENSANAG00000022626) #32	EPHX1 (ENSANAG00000027514) #33	TMEM63A (ENSANAG00000020164) #34	ENSANAG00000029521 #35
Tarsier	MODERN SPECIES	5513																FBXO28 (ENSTSYG00000013021) #22	ENSTSYG00000034342	STAG1 (ENSTSYG00000011741)	PCCB (ENSTSYG00000011726)
Strepsirrhini	ANCESTRAL SPECIES		ENSGT00950000183093.C	ENSGT00940000157671	ENSGT00940000161139 #8	ENSGT00390000011405 #9	ENSGT00950000182767.a.a #10	ENSGT00390000016465 #11	ENSGT00390000006681 #12	ENSGT00390000016736.b #13	ENSGT00940000157407 #14	ENSGT00940000162464	ENSGT00940000160410 #15	ENSGT00740000115684 #16	ENSGT00940000160090 #18	ENSGT00940000154784.D.a.b #19	ENSGT00940000153463.b #20	ENSGT00390000002970 #22	ENSGT00390000013448.a.a #23	ENSGT00570000079239 #24	ENSGT00950000182834.B #25	ENSGT00940000153634.b #26	ENSGT00950000182834.A.a.b.c #28	ENSGT00940000160505 #29	ENSGT00390000000417.a.a.b.a.b #30	ENSGT00940000157376 #31	ENSGT00390000018505.b #32	ENSGT00390000002210.d #33	ENSGT00940000159576 #34	ENSGT00950000183044.a.a.a.c #36	ENSGT00390000010056 #35	ENSGT00530000063402.b	ENSGT01100000263504.a.b.b.a.b.c
Lemuriformes	ANCESTRAL SPECIES	6	ENSGT00950000183093.C	ENSGT00940000157671	ENSGT00940000161139 #8	ENSGT00390000011405 #9	ENSGT00950000182767.a.a #10	ENSGT00390000016465 #11	ENSGT00390000006681 #12	ENSGT00390000016736.b #13	ENSGT00940000157407 #14	ENSGT00940000162464	ENSGT00940000160410 #15	ENSGT00740000115684 #16	ENSGT00940000160090 #18	ENSGT00940000154784.D.a.b #19	ENSGT00940000153463.b #20	ENSGT00390000002970 #22	ENSGT00390000013448.a.a #23	ENSGT00570000079239 #24	ENSGT00950000182834.B #25	ENSGT00940000153634.b #26	ENSGT00950000182834.A.a.b.c #28	ENSGT00940000160505 #29	ENSGT00390000000417.a.a.b.a.b #30	ENSGT00940000157376 #31	ENSGT00390000018505.b.i.a #32	ENSGT00390000002210.d #33	ENSGT00940000159576 #34	ENSGT00950000183044.a.a.a.c #36	ENSGT00390000010056 #35	ENSGT00530000063402.b	ENSGT01100000263504.a.b.b.a.b.c
Lemuriformes_a	ANCESTRAL SPECIES	155	ENSGT00950000183093.C	ENSGT00940000157671	ENSGT00940000161139 #8	ENSGT00390000011405 #9	ENSGT00950000182767.a.a #10	ENSGT00390000016465 #11	ENSGT00390000006681 #12	ENSGT00390000016736.b #13	ENSGT00940000157407 #14	ENSGT00940000162464	ENSGT00940000160410 #15	ENSGT00740000115684 #16	ENSGT00940000160090 #18	ENSGT00940000154784.D.a.b #19	ENSGT00940000153463.b #20	ENSGT00390000002970 #22	ENSGT00390000013448.a.a #23	ENSGT00570000079239 #24	ENSGT00950000182834.B #25	ENSGT00940000153634.b #26	ENSGT00950000182834.A.a.b.c #28	ENSGT00940000160505 #29	ENSGT00390000000417.a.a.b.a.b #30	ENSGT00940000157376 #31	ENSGT00390000018505.b.i.a #32	ENSGT00940000173703
Coquerels sifaka	MODERN SPECIES	296	ENSPCOG00000009000	ENSPCOG00000012239	SOHLH2 (ENSPCOG00000028061)	ENSPCOG00000016947	ENSPCOG00000016847	MAB21L1 (ENSPCOG00000014059)	ENSPCOG00000023749	ENSPCOG00000023670	BROX (ENSPCOG00000026274) #12	FAM177B (ENSPCOG00000012430) #13	DISP1 (ENSPCOG00000009108) #14	SUSD4 (ENSPCOG00000011601) #15	CAPN8 (ENSPCOG00000020364) #18	CAPN2 (ENSPCOG00000022676) #19	TP53BP2 (ENSPCOG00000017767) #20	FBXO28 (ENSPCOG00000021402) #22	DEGS1 (ENSPCOG00000015536) #23	NVL (ENSPCOG00000021137) #24	CNIH4 (ENSPCOG00000010164) #25	WDR26 (ENSPCOG00000012980) #26	CNIH3 (ENSPCOG00000009065) #28	ENSPCOG00000016968	DNAH14 (ENSPCOG00000015662) #29	LBR (ENSPCOG00000018216) #30	ENAH (ENSPCOG00000012298) #31
Greater bamboo lemur	MODERN SPECIES	312												ENSPSMG00000000832 #16	ENSPSMG00000000823 #18	CAPN2 (ENSPSMG00000000769) #19	TP53BP2 (ENSPSMG00000000664) #20	FBXO28 (ENSPSMG00000000618) #22	DEGS1 (ENSPSMG00000000586) #23	ENSPSMG00000000578	NVL (ENSPSMG00000000466) #24	CNIH4 (ENSPSMG00000000293) #25	WDR26 (ENSPSMG00000000200) #26
Mouse lemur	MODERN SPECIES	8	HLX (ENSMICG00000028264)	DUSP10 (ENSMICG00000037572)	ENSMICG00000028808	TAF1A (ENSMICG00000032953) #9	MIA3 (ENSMICG00000017165) #10	AIDA (ENSMICG00000017177) #11	BROX (ENSMICG00000017180) #12	ENSMICG00000037814	DISP1 (ENSMICG00000033846) #14	SUSD4 (ENSMICG00000004902) #15	ENSMICG00000029336	ENSMICG00000027054 #18	CAPN2 (ENSMICG00000016484) #19	TP53BP2 (ENSMICG00000016508) #20	ENSMICG00000047667	FBXO28 (ENSMICG00000034771) #22	DEGS1 (ENSMICG00000041977) #23	ENSMICG00000031137	ENSMICG00000035516	NVL (ENSMICG00000006602) #24	CNIH4 (ENSMICG00000032337) #25	ENSMICG00000030956	WDR26 (ENSMICG00000006896) #26	CNIH3 (ENSMICG00000031871) #28	DNAH14 (ENSMICG00000037251) #29	ENSMICG00000031047	LBR (ENSMICG00000010070) #30	ENAH (ENSMICG00000010930) #31	ENSMICG00000009785	ENSMICG00000030104 #32	EPHX1 (ENSMICG00000034513) #33
Bushbaby	MODERN SPECIES	160	DUSP10 (ENSOGAG00000003389)	ENSOGAG00000024088	ENSOGAG00000032948	HHIPL2 (ENSOGAG00000003007) #8	TAF1A (ENSOGAG00000003011) #9	MIA3 (ENSOGAG00000024263) #10	AIDA (ENSOGAG00000030209) #11	BROX (ENSOGAG00000016013) #12	DISP1 (ENSOGAG00000016675) #14	TLR5 (ENSOGAG00000016269)	SUSD4 (ENSOGAG00000016273) #15	CCDC185 (ENSOGAG00000015971) #16	CAPN8 (ENSOGAG00000009120) #18	CAPN2 (ENSOGAG00000012548) #19	TP53BP2 (ENSOGAG00000012552) #20	FBXO28 (ENSOGAG00000032645) #22	DEGS1 (ENSOGAG00000010827) #23	NVL (ENSOGAG00000003955) #24	CNIH4 (ENSOGAG00000008894) #25	WDR26 (ENSOGAG00000015427) #26	ENSOGAG00000029941	CNIH3 (ENSOGAG00000003349) #28	DNAH14 (ENSOGAG00000028956) #29	LBR (ENSOGAG00000013724) #30	ENAH (ENSOGAG00000031134) #31	ENSOGAG00000001752 #32	EPHX1 (ENSOGAG00000010341) #33	TMEM63A (ENSOGAG00000010346) #34	ENSOGAG00000033220 #35	PYCR2 (ENSOGAG00000024897) #36	AGT (ENSOGAG00000011286)
Euarchontoglires_A	ANCESTRAL SPECIES		ENSGT00950000183093.C	ENSGT00940000157671	ENSGT00940000161139 #8	ENSGT00390000011405 #9	ENSGT00950000182767.a.a #10	ENSGT00390000016465 #11	ENSGT00390000006681 #12	ENSGT00390000016736.b #13	ENSGT00940000157407 #14	ENSGT00940000162464	ENSGT00940000160410 #15	ENSGT00740000115684 #16	ENSGT00940000160090 #18	ENSGT00940000154784.D.a.b #19	ENSGT00940000153463.b #20	ENSGT00390000002970 #22	ENSGT00390000013448.a.a #23	ENSGT00570000079239 #24	ENSGT00950000182834.B #25	ENSGT00940000153634.b #26	ENSGT00950000182834.A.a.b.c #28	ENSGT00390000000412	ENSGT00940000160505 #29	ENSGT00390000000417.a.a.b.a.b #30	ENSGT00940000157376 #31	ENSGT00390000018505.b #32	ENSGT00390000002210.d #33	ENSGT00940000159576 #34	ENSGT00950000183044.a.a.a.c #36	ENSGT00390000010056 #35	ENSGT00530000063402.b
Tree shrew	MODERN SPECIES	2149																ENSTBEG00000006481 #22
Glires	ANCESTRAL SPECIES		ENSGT00950000183093.C	ENSGT00940000157671	ENSGT00940000161139 #8	ENSGT00390000011405 #9	ENSGT00950000182767.a.a #10	ENSGT00390000016465 #11	ENSGT00390000006681 #12	ENSGT00390000016736.b #13	ENSGT00940000157407 #14	ENSGT00940000162464	ENSGT00940000160410 #15	ENSGT00740000115684 #16	ENSGT00940000160090 #18	ENSGT00940000154784.D.a.b #19	ENSGT00940000153463.b #20	ENSGT00390000002970 #22	ENSGT00390000013448.a.a #23	ENSGT00570000079239 #24	ENSGT00950000182834.B #25	ENSGT00940000153634.b #26	ENSGT00950000182834.A.a.b.c #28	ENSGT00390000000412	ENSGT00940000160505 #29	ENSGT00390000000417.a.a.b.a.b #30	ENSGT00940000157376 #31	ENSGT00390000018505.b #32	ENSGT00390000002210.d #33	ENSGT00940000159576 #34	ENSGT00950000183044.a.a.a.c #36	ENSGT00390000010056 #35	ENSGT00530000063402.b
Lagomorpha	ANCESTRAL SPECIES	15	ENSGT00950000183093.C	ENSGT00940000157671	ENSGT00940000161139 #8	ENSGT00390000011405 #9	ENSGT00950000182767.a.a #10	ENSGT00390000016465 #11	ENSGT00390000006681 #12	ENSGT00390000016736.b #13	ENSGT00940000157407 #14	ENSGT00940000162464	ENSGT00940000160410 #15	ENSGT00740000115684 #16	ENSGT00940000160090 #18	ENSGT00940000154784.D.a.b #19	ENSGT00940000153463.b #20	ENSGT00390000002970 #22	ENSGT00390000013448.a.a #23	ENSGT00570000079239 #24	ENSGT00950000182834.B #25	ENSGT00940000153634.b #26	ENSGT00950000182834.A.a.b.c #28
Rabbit	MODERN SPECIES	7	ENSOCUG00000032919	ENSOCUG00000000250	HHIPL2 (ENSOCUG00000000603) #8	TAF1A (ENSOCUG00000000606) #9	MIA3 (ENSOCUG00000025154) #10	AIDA (ENSOCUG00000017030) #11	BROX (ENSOCUG00000016381) #12	ENSOCUG00000021671	DISP1 (ENSOCUG00000006408) #14	SUSD4 (ENSOCUG00000006228) #15	CCDC185 (ENSOCUG00000014381) #16	CAPN8 (ENSOCUG00000008207) #18	ENSOCUG00000033605	CAPN2 (ENSOCUG00000004612) #19	TP53BP2 (ENSOCUG00000004626) #20	FBXO28 (ENSOCUG00000004012) #22	ENSOCUG00000023942 #23	NVL (ENSOCUG00000005530) #24	CNIH4 (ENSOCUG00000000520) #25	WDR26 (ENSOCUG00000003294) #26	CNIH3 (ENSOCUG00000007694) #28	PARP1 (ENSOCUG00000017820)	LIN9 (ENSOCUG00000010028)	ENSOCUG00000022544	MIXL1 (ENSOCUG00000000103)	ACBD3 (ENSOCUG00000014391)	ENSOCUG00000024644	SDE2 (ENSOCUG00000001919)	ENSOCUG00000023218 #35	PYCR2 (ENSOCUG00000001915) #36	ENSOCUG00000021555 #35
Pika	MODERN SPECIES	1846																FBXO28 (ENSOPRG00000015515) #22
Rodentia	ANCESTRAL SPECIES		ENSGT00940000157671	ENSGT00520000058292	ENSGT00940000161139 #8	ENSGT00390000011405 #9	ENSGT00950000182767.a.a #10	ENSGT00390000016465 #11	ENSGT00390000006681 #12	ENSGT00390000016736.b #13	ENSGT00940000157407 #14	ENSGT00940000162464	ENSGT00940000160410 #15	ENSGT00740000115684 #16	ENSGT00940000160090 #18	ENSGT00940000154784.D.a.b #19	ENSGT00940000153463.b #20	ENSGT00390000002970 #22	ENSGT00390000013448.a.a #23	ENSGT00570000079239 #24	ENSGT00950000182834.B #25	ENSGT00940000153634.b #26	ENSGT00950000182834.A.a.b.c #28	ENSGT00390000000412	ENSGT00940000160505 #29	ENSGT00390000000417.a.a.b.a.b #30	ENSGT00940000157376 #31	ENSGT00390000018505.b #32	ENSGT00390000002210.d #33	ENSGT00940000159576 #34	ENSGT00950000183044.a.a.a.c #36	ENSGT00390000010056 #35	ENSGT00530000063402.b
Rodentia_B	ANCESTRAL SPECIES		ENSGT00950000183093.C	ENSGT00940000157671	ENSGT00520000058292	ENSGT00940000161139 #8	ENSGT00390000011405 #9	ENSGT00950000182767.a.a #10	ENSGT00390000016465 #11	ENSGT00390000006681 #12	ENSGT00940000157407 #14	ENSGT00940000162464	ENSGT00940000160410 #15	ENSGT00740000115684 #16	ENSGT00940000160090 #18	ENSGT00940000154784.D.a.b #19	ENSGT00940000153463.b #20	ENSGT00390000002970 #22	ENSGT00390000013448.a.a #23	ENSGT00570000079239 #24	ENSGT00950000182834.B #25	ENSGT00940000153634.b #26	ENSGT00950000182834.A.a.b.c #28	ENSGT00940000160505 #29	ENSGT00390000000417.a.a.b.a.b #30	ENSGT00940000157376 #31	ENSGT00390000018505.b #32
Myomorpha	ANCESTRAL SPECIES	48	ENSGT00950000183093.C	ENSGT00940000157671	ENSGT00520000058292	ENSGT00940000161139 #8	ENSGT00390000011405 #9	ENSGT00950000182767.a.a #10	ENSGT00390000016465 #11	ENSGT00390000006681 #12	ENSGT00940000157407 #14	ENSGT00940000162464	ENSGT00940000160410 #15	ENSGT00740000115684 #16	ENSGT00940000160090 #18	ENSGT00940000154784.D.a.b #19	ENSGT00940000153463.b #20	ENSGT00390000002970 #22	ENSGT00390000013448.a.a #23	ENSGT00570000079239 #24	ENSGT00950000182834.B #25	ENSGT00940000153634.b #26	ENSGT00950000182834.A.a.b.c #28	ENSGT00940000160505 #29	ENSGT00390000000417.a.a.b.a.b #30	ENSGT00940000157376 #31	ENSGT00390000018505.b #32
Muroidea	ANCESTRAL SPECIES	9	ENSGT00950000183093.C	ENSGT00940000157671	ENSGT00520000058292	ENSGT00940000161139 #8	ENSGT00390000011405 #9	ENSGT00950000182767.a.a #10	ENSGT00390000016465 #11	ENSGT00390000006681 #12	ENSGT00940000157407 #14	ENSGT00940000162464	ENSGT00940000160410 #15	ENSGT00740000115684 #16	ENSGT00940000160090 #18	ENSGT00940000154784.D.a.b #19	ENSGT00940000153463.b #20	ENSGT00390000002970 #22	ENSGT00390000013448.a.a #23	ENSGT00390000018505.b #32	ENSGT00940000157376 #31	ENSGT00390000000417.a.a.b.a.b #30	ENSGT00940000160505 #29	ENSGT00950000182834.A.a.b.c #28	ENSGT00940000153634.b #26	ENSGT00950000182834.B #25	ENSGT00570000079239 #24	ENSGT00390000002210.d #33	ENSGT00940000159576 #34	ENSGT00950000183044.a.a.a.c #36	ENSGT00390000010056 #35	ENSGT00530000063402.b	ENSGT01100000263504.a.b.a.b.a.b.tb
Muroidea_A	ANCESTRAL SPECIES	12	ENSGT00950000183093.C	ENSGT00940000157671	ENSGT00520000058292	ENSGT00940000161139 #8	ENSGT00390000011405 #9	ENSGT00950000182767.a.a #10	ENSGT00390000016465 #11	ENSGT00390000006681 #12	ENSGT00940000157407 #14	ENSGT00940000162464	ENSGT00940000160410 #15	ENSGT00740000115684 #16	ENSGT00940000160090 #18	ENSGT00940000154784.D.a.b #19	ENSGT00940000153463.b #20	ENSGT00390000002970 #22	ENSGT00390000013448.a.a.i #23	ENSGT01030000234553.b.b.d.c.b.a.b	ENSGT00390000018505.b #32	ENSGT00940000157376 #31	ENSGT00390000000417.a.a.b.a.b #30	ENSGT00940000160505 #29	ENSGT01000000214622.a.a.a	ENSGT00950000182834.A.a.b.c #28	ENSGT00940000153634.b #26	ENSGT00950000182834.B #25	ENSGT00570000079239 #24	ENSGT00390000013448.a.a.j.b #23	ENSGT00390000013448.a.a.j.a #23	ENSGT00390000002210.d #33	ENSGT00940000159576 #34
Cricetidae	ANCESTRAL SPECIES	13	ENSGT00950000183093.C	ENSGT00940000157671	ENSGT00520000058292	ENSGT00940000161139 #8	ENSGT00390000011405 #9	ENSGT00950000182767.a.a #10	ENSGT00390000016465 #11	ENSGT00390000006681 #12	ENSGT00940000157407 #14	ENSGT00940000162464	ENSGT00940000160410 #15	ENSGT00740000115684 #16	ENSGT00940000160090 #18	ENSGT00940000154784.D.a.b #19	ENSGT00940000153463.b #20	ENSGT00390000002970 #22	ENSGT00390000013448.a.a.i #23	ENSGT01030000234553.b.b.d.c.b.a.b	ENSGT00390000018505.b #32	ENSGT00940000157376 #31	ENSGT00390000000417.a.a.b.a.b #30	ENSGT00940000160505 #29	ENSGT01000000214622.a.a.a	ENSGT00950000182834.A.a.b.c #28	ENSGT00940000153634.b #26	ENSGT00950000182834.B #25	ENSGT00570000079239 #24	ENSGT00390000013448.a.a.j.b #23	ENSGT00390000013448.a.a.j.a #23	ENSGT00390000002210.d #33	ENSGT00940000159576 #34
Cricetinae	DUPLICATION
Cricetinae	ANCESTRAL SPECIES	4	ENSGT00950000183093.C	ENSGT00940000157671	ENSGT00520000058292	ENSGT00940000161139 #8	ENSGT00390000011405 #9	ENSGT00950000182767.a.a #10	ENSGT00390000016465 #11	ENSGT00390000006681 #12	ENSGT00940000157407 #14	ENSGT00940000162464	ENSGT00940000160410 #15	ENSGT00740000115684 #16	ENSGT00940000160090 #18	ENSGT00940000154784.D.a.b #19	ENSGT00940000153463.b #20	ENSGT00390000002970.u #22	ENSGT00390000013448.a.a.i #23	ENSGT01030000234553.b.b.d.c.b.a.b	ENSGT00390000018505.b #32	ENSGT00940000157376 #31	ENSGT00390000000417.a.a.b.a.b #30	ENSGT00940000160505 #29	ENSGT01000000214622.a.a.a	ENSGT00950000182834.A.a.b.c #28	ENSGT00940000153634.b #26	ENSGT00950000182834.B #25	ENSGT00570000079239 #24	ENSGT00390000013448.a.a.j.b #23	ENSGT00390000013448.a.a.j.a #23	ENSGT00390000002210.d #33	ENSGT00940000159576 #34
Golden Hamster	MODERN SPECIES	697								ENSMAUG00000008373 #11	Brox (ENSMAUG00000010699) #12	Disp1 (ENSMAUG00000011793) #14	Tlr5 (ENSMAUG00000015989)	Susd4 (ENSMAUG00000016992) #15	Capn8 (ENSMAUG00000013583) #18	Capn2 (ENSMAUG00000012201) #19	Trp53bp2 (ENSMAUG00000016823) #20	Fbxo28 (ENSMAUG00000017511) #22	Degs1 (ENSMAUG00000015951) #23	Srp9 (ENSMAUG00000017552) #32	Enah (ENSMAUG00000017836) #31	Lbr (ENSMAUG00000012993) #30	ENSMAUG00000014176 #29	Ccdc121rt1 (ENSMAUG00000010926)	Cnih3 (ENSMAUG00000012379) #28	Wdr26 (ENSMAUG00000014280) #26	Cnih4 (ENSMAUG00000012691) #25	Nvl (ENSMAUG00000015157) #24	ENSMAUG00000003804 #23	ENSMAUG00000007599	Lefty1 (ENSMAUG00000009066) #35	Pycr2 (ENSMAUG00000017705) #36	Lefty2 (ENSMAUG00000018742) #35
Chinese hamster chok1gshd	MODERN SPECIES	1	Pcm1 (ENSCGRG00001020402)	Fgl1 (ENSCGRG00001023635)	ENSCGRG00001024241	Pdgfrl (ENSCGRG00001024745)	Slc7a2 (ENSCGRG00001017279)	ENSCGRG00001014016	Adam24 (ENSCGRG00001004936)	Mtmr7 (ENSCGRG00001021013)	Vps37a (ENSCGRG00001011654)	Cnot7 (ENSCGRG00001011174)	Zdhhc2 (ENSCGRG00001012910)	Micu3 (ENSCGRG00001013964)	Fgf20 (ENSCGRG00001017693)	ENSCGRG00001012099	Msr1 (ENSCGRG00001004518)	ENSCGRG00001005908 #22	ENSCGRG00001008370	Tusc3 (ENSCGRG00001010762)	Sgcz (ENSCGRG00001012345)	ENSCGRG00001005641	AI429214 (ENSCGRG00001009617)	Dlc1 (ENSCGRG00001019041)	Trmt9b (ENSCGRG00001019764)	Lonrf1 (ENSCGRG00001020250)	ENSCGRG00001005461	Prag1 (ENSCGRG00001023518)	Cldn23 (ENSCGRG00001006104)	Gm19410 (ENSCGRG00001024429)	ENSCGRG00001016163	Eri1 (ENSCGRG00001017852)	Ppp1r3b (ENSCGRG00001005666)
Cricetinae	ANCESTRAL SPECIES																	ENSGT00390000002970.v #22
Chinese hamster chok1gshd	MODERN SPECIES	2	Dusp10 (ENSCGRG00001018543)	1700056E22Rik (ENSCGRG00001011197)	ENSCGRG00001010939	Hhipl2 (ENSCGRG00001014102) #8	Taf1a (ENSCGRG00001018774) #9	ENSCGRG00001023192 #10	Aida (ENSCGRG00001022468) #11	Brox (ENSCGRG00001024002) #12	Disp1 (ENSCGRG00001020417) #14	Tlr5 (ENSCGRG00001021852)	Susd4 (ENSCGRG00001017083) #15	Ccdc185 (ENSCGRG00001009424) #16	Capn8 (ENSCGRG00001010502) #18	Capn2 (ENSCGRG00001024014) #19	Trp53bp2 (ENSCGRG00001016347) #20	ENSCGRG00001024842 #22	Degs1 (ENSCGRG00001002610) #23	Vmn1r1 (ENSCGRG00001010250)	Srp9 (ENSCGRG00001008910) #32	Enah (ENSCGRG00001013627) #31	Lbr (ENSCGRG00001022299) #30	ENSCGRG00001009826 #29	Ccdc121rt1 (ENSCGRG00001005549)	Cnih3 (ENSCGRG00001018492) #28	Wdr26 (ENSCGRG00001018374) #26	Cnih4 (ENSCGRG00001000385) #25	Nvl (ENSCGRG00001007917) #24	ENSCGRG00001016864 #23	9130409I23Rik (ENSCGRG00001023435) #23	Ephx1 (ENSCGRG00001023454) #33	Tmem63a (ENSCGRG00001022346) #34
Cricetidae_B	ANCESTRAL SPECIES	8	ENSGT00950000183093.C	ENSGT00940000157671	ENSGT00520000058292	ENSGT00940000161139 #8	ENSGT00390000011405 #9	ENSGT00950000182767.a.a #10	ENSGT00390000016465 #11	ENSGT00390000006681 #12	ENSGT00940000157407 #14	ENSGT00940000162464	ENSGT00940000160410 #15	ENSGT00740000115684 #16	ENSGT00940000160090 #18	ENSGT00940000154784.D.a.b #19	ENSGT00940000153463.b #20	ENSGT00390000002970 #22	ENSGT00390000013448.a.a.i #23	ENSGT01030000234553.b.b.d.c.b.a.b	ENSGT00390000018505.b #32	ENSGT00940000157376 #31	ENSGT00390000000417.a.a.b.a.b #30	ENSGT00940000160505 #29	ENSGT01000000214622.a.a.a	ENSGT00950000182834.A.a.b.c #28	ENSGT00940000153634.b #26	ENSGT00950000182834.B #25	ENSGT00570000079239 #24	ENSGT00390000013448.a.a.j.b #23	ENSGT00390000013448.a.a.j.a #23	ENSGT00390000002210.d #33	ENSGT00940000159576 #34
Prairie vole	MODERN SPECIES	14	Lamb3 (ENSMOCG00000016300)	Camk1g (ENSMOCG00000018302)	Plxna2 (ENSMOCG00000007230)	Cd34 (ENSMOCG00000020322)	Cd46 (ENSMOCG00000016616)	ENSMOCG00000018969	Cr2 (ENSMOCG00000013074)	Aida (ENSMOCG00000014960) #11	Brox (ENSMOCG00000021404) #12	Disp1 (ENSMOCG00000003503) #14	Tlr5 (ENSMOCG00000007149)	Susd4 (ENSMOCG00000021482) #15	Capn8 (ENSMOCG00000007896) #18	Capn2 (ENSMOCG00000005406) #19	Trp53bp2 (ENSMOCG00000023035) #20	Fbxo28 (ENSMOCG00000006258) #22	Degs1 (ENSMOCG00000021480) #23	Srp9 (ENSMOCG00000012590) #32	ENSMOCG00000019142	ENSMOCG00000004862	Enah (ENSMOCG00000016095) #31	ENSMOCG00000009557	ENSMOCG00000011930 #29	Cnih3 (ENSMOCG00000011071) #28	Wdr26 (ENSMOCG00000018920) #26	Cnih4 (ENSMOCG00000014531) #25	Nvl (ENSMOCG00000017466) #24	9130409I23Rik (ENSMOCG00000021672) #23	ENSMOCG00000002922 #33	Tmem63a (ENSMOCG00000010850) #34	Lefty1 (ENSMOCG00000013803) #35
Northern American deer mouse	MODERN SPECIES	2	1700056E22Rik (ENSPEMG00000027598)	Hhipl2 (ENSPEMG00000021653) #8	Taf1a (ENSPEMG00000023637) #9	ENSPEMG00000026967 #10	ENSPEMG00000022967 #10	Aida (ENSPEMG00000003676) #11	Brox (ENSPEMG00000013294) #12	Disp1 (ENSPEMG00000017075) #14	Tlr5 (ENSPEMG00000022878)	Susd4 (ENSPEMG00000022185) #15	Ccdc185 (ENSPEMG00000027935) #16	Capn8 (ENSPEMG00000022069) #18	ENSPEMG00000031335	Capn2 (ENSPEMG00000022586) #19	Trp53bp2 (ENSPEMG00000022254) #20	ENSPEMG00000024922 #22	ENSPEMG00000030554	Degs1 (ENSPEMG00000024291) #23	Vmn1r1 (ENSPEMG00000030686)	Srp9 (ENSPEMG00000022774) #32	Enah (ENSPEMG00000022874) #31	Lbr (ENSPEMG00000022439) #30	Dnah14 (ENSPEMG00000025670) #29	Ccdc121rt1 (ENSPEMG00000029360)	Cnih3 (ENSPEMG00000008307) #28	Wdr26 (ENSPEMG00000010249) #26	Cnih4 (ENSPEMG00000012374) #25	Nvl (ENSPEMG00000001236) #24	ENSPEMG00000025337 #23	9130409I23Rik (ENSPEMG00000011902) #23	ENSPEMG00000025705 #33
Murinae	ANCESTRAL SPECIES	11	ENSGT00950000183093.C	ENSGT00940000157671	ENSGT00520000058292	ENSGT00940000161139 #8	ENSGT00390000011405 #9	ENSGT00950000182767.a.a #10	ENSGT00390000016465 #11	ENSGT00390000006681 #12	ENSGT00940000157407 #14	ENSGT00940000162464	ENSGT00940000160410 #15	ENSGT00740000115684 #16	ENSGT00940000160090 #18	ENSGT00940000154784.D.a.b #19	ENSGT00940000153463.b #20	ENSGT00390000002970 #22	ENSGT00390000013448.a.a.i #23	ENSGT01030000234553.b.b.d.c.b.a.b	ENSGT00390000018505.b #32	ENSGT00940000157376 #31	ENSGT00390000000417.a.a.b.a.b #30	ENSGT00940000160505 #29	ENSGT01000000214622.a.a.a	ENSGT00950000182834.A.a.b.c #28	ENSGT00940000153634.b #26	ENSGT00950000182834.B #25	ENSGT00570000079239 #24	ENSGT00390000013448.a.a.j.b #23	ENSGT00390000013448.a.a.j.a #23	ENSGT00390000002210.d #33	ENSGT00940000159576 #34
Mus	ANCESTRAL SPECIES	5	ENSGT00950000183093.C	ENSGT00940000157671	ENSGT00520000058292	ENSGT00940000161139 #8	ENSGT00390000011405 #9	ENSGT00950000182767.a.a #10	ENSGT00390000016465 #11	ENSGT00390000006681 #12	ENSGT00940000157407 #14	ENSGT00940000162464	ENSGT00940000160410 #15	ENSGT00740000115684 #16	ENSGT00940000160090 #18	ENSGT00940000154784.D.a.b #19	ENSGT00940000153463.b #20	ENSGT00390000002970 #22	ENSGT00390000013448.a.a.i #23	ENSGT01030000234553.b.b.d.c.b.a.b	ENSGT00390000018505.b #32	ENSGT00940000157376 #31	ENSGT00390000000417.a.a.b.a.b #30	ENSGT00940000160505 #29	ENSGT01000000214622.a.a.a	ENSGT00950000182834.A.a.b.c #28	ENSGT00940000153634.b #26	ENSGT00950000182834.B #25	ENSGT00570000079239 #24	ENSGT00390000013448.a.a.j.b #23	ENSGT00390000013448.a.a.j.a #23	ENSGT00390000002210.d #33	ENSGT00940000159576 #34
Mus_A	ANCESTRAL SPECIES	5	ENSGT00950000183093.C	ENSGT00520000058292	ENSGT00940000157671	ENSGT00940000161139 #8	ENSGT00390000011405 #9	ENSGT00950000182767.a.a #10	ENSGT00390000016465 #11	ENSGT00390000006681 #12	ENSGT00940000157407 #14	ENSGT00940000162464	ENSGT00940000160410 #15	ENSGT00740000115684 #16	ENSGT00940000160090 #18	ENSGT00940000154784.D.a.b #19	ENSGT00940000153463.b #20	ENSGT00390000002970 #22	ENSGT00390000013448.a.a.i #23	ENSGT01030000234553.b.b.d.c.b.a.b	ENSGT00390000018505.b #32	ENSGT00940000157376 #31	ENSGT00390000000417.a.a.b.a.b #30	ENSGT00940000160505 #29	ENSGT01000000214622.a.a.a	ENSGT00950000182834.A.a.b.c #28	ENSGT00940000153634.b #26	ENSGT00950000182834.B #25	ENSGT00570000079239 #24	ENSGT00390000013448.a.a.j.b #23	ENSGT00390000013448.a.a.j.a #23	ENSGT00390000002210.d #33	ENSGT00940000159576 #34
Mus_B	ANCESTRAL SPECIES	7	ENSGT00950000183093.C	ENSGT00520000058292	ENSGT00940000157671	ENSGT00940000161139 #8	ENSGT00390000011405 #9	ENSGT00950000182767.a.a #10	ENSGT00390000016465 #11	ENSGT00390000006681 #12	ENSGT00940000157407 #14	ENSGT00940000162464	ENSGT00940000160410 #15	ENSGT00740000115684 #16	ENSGT00940000160090 #18	ENSGT00940000154784.D.a.b #19	ENSGT00940000153463.b #20	ENSGT00390000002970 #22	ENSGT00390000013448.a.a.i #23	ENSGT01030000234553.b.b.d.c.b.a.b	ENSGT00390000018505.b #32	ENSGT00940000157376 #31	ENSGT00390000000417.a.a.b.a.b #30	ENSGT00940000160505 #29	ENSGT01000000214622.a.a.a	ENSGT00950000182834.A.a.b.c #28	ENSGT00940000153634.b #26	ENSGT00950000182834.B #25	ENSGT00570000079239 #24	ENSGT00390000013448.a.a.j.b #23	ENSGT00390000013448.a.a.j.a #23	ENSGT00390000002210.d #33	ENSGT00940000159576 #34
Mus_C	ANCESTRAL SPECIES	1	ENSGT00950000183093.C	ENSGT00940000157671	ENSGT00520000058292	ENSGT00940000161139 #8	ENSGT00390000011405 #9	ENSGT00950000182767.a.a #10	ENSGT00390000016465 #11	ENSGT00390000006681 #12	ENSGT00940000157407 #14	ENSGT00940000162464	ENSGT00940000160410 #15	ENSGT00740000115684 #16	ENSGT00940000160090 #18	ENSGT00940000154784.D.a.b #19	ENSGT00940000153463.b #20	ENSGT00390000002970 #22	ENSGT00390000013448.a.a.i #23	ENSGT01030000234553.b.b.d.c.b.a.b	ENSGT00390000018505.b #32	ENSGT00940000157376 #31	ENSGT00390000000417.a.a.b.a.b #30	ENSGT00940000160505 #29	ENSGT01000000214622.a.a.a	ENSGT00950000182834.A.a.b.c #28	ENSGT00940000153634.b #26	ENSGT00950000182834.B #25	ENSGT00570000079239 #24	ENSGT00390000013448.a.a.j.b #23	ENSGT00390000013448.a.a.j.a #23	ENSGT00390000002210.d #33	ENSGT00940000159576 #34
Steppe mouse	MODERN SPECIES	2768					Mia3 (ENSMSIG00000016990) #10	Aida (ENSMSIG00000016931) #11	Brox (ENSMSIG00000016859) #12	ENSMSIG00000016829	Disp1 (ENSMSIG00000016706) #14	Tlr5 (ENSMSIG00000016692)	Susd4 (ENSMSIG00000016677) #15	Ccdc185 (ENSMSIG00000016670) #16	Capn8 (ENSMSIG00000016604) #18	Capn2 (ENSMSIG00000016556) #19	Trp53bp2 (ENSMSIG00000016453) #20	Fbxo28 (ENSMSIG00000016423) #22	Degs1 (ENSMSIG00000016411) #23	Araf (ENSMSIG00000016384)
spretus	MODERN SPECIES		Hlx (MGP_SPRETEiJ_G0015815)	1700056E22Rik (MGP_SPRETEiJ_G0015814)	Dusp10 (MGP_SPRETEiJ_G0015813)	Hhipl2 (MGP_SPRETEiJ_G0015812) #8	Taf1a (MGP_SPRETEiJ_G0015811) #9	MGP_SPRETEiJ_G0015810 #10	Aida (MGP_SPRETEiJ_G0015809) #11	MGP_SPRETEiJ_G0015808 #12	Disp1 (MGP_SPRETEiJ_G0015807) #14	Tlr5 (MGP_SPRETEiJ_G0015806)	Susd4 (MGP_SPRETEiJ_G0015805) #15	Ccdc185 (MGP_SPRETEiJ_G0015804) #16	Capn8 (MGP_SPRETEiJ_G0015803) #18	Capn2 (MGP_SPRETEiJ_G0015802) #19	Trp53bp2 (MGP_SPRETEiJ_G0015801) #20	Fbxo28 (MGP_SPRETEiJ_G0015800) #22	Degs1 (MGP_SPRETEiJ_G0015799) #23	Vmn1r1 (MGP_SPRETEiJ_G0015798)	Srp9 (MGP_SPRETEiJ_G0015797) #32	Enah (MGP_SPRETEiJ_G0015796) #31	Lbr (MGP_SPRETEiJ_G0015795) #30	MGP_SPRETEiJ_G0015794 #29	MGP_SPRETEiJ_G0015793	Cnih3 (MGP_SPRETEiJ_G0015792) #28	Wdr26 (MGP_SPRETEiJ_G0015791) #26	Cnih4 (MGP_SPRETEiJ_G0015790) #25	Nvl (MGP_SPRETEiJ_G0015789) #24	9130409I23Rik (MGP_SPRETEiJ_G0015788) #23	Ephx1 (MGP_SPRETEiJ_G0015787) #33	Tmem63a (MGP_SPRETEiJ_G0015786) #34	Pycr2 (MGP_SPRETEiJ_G0015785) #36
Mouse	MODERN SPECIES		Hlx (ENSMUSG00000039377)	1700056E22Rik (ENSMUSG00000044854)	Dusp10 (ENSMUSG00000039384)	Hhipl2 (ENSMUSG00000053461) #8	Taf1a (ENSMUSG00000072258) #9	Mia3 (ENSMUSG00000056050) #10	Aida (ENSMUSG00000042901) #11	Brox (ENSMUSG00000046836) #12	Disp1 (ENSMUSG00000030768) #14	Tlr5 (ENSMUSG00000079164)	Susd4 (ENSMUSG00000038576) #15	Ccdc185 (ENSMUSG00000043429) #16	Capn8 (ENSMUSG00000038599) #18	Capn2 (ENSMUSG00000026509) #19	Trp53bp2 (ENSMUSG00000026510) #20	Fbxo28 (ENSMUSG00000047539) #22	Degs1 (ENSMUSG00000038633) #23	Vmn1r1 (ENSMUSG00000091013)	Srp9 (ENSMUSG00000026511) #32	Enah (ENSMUSG00000022995) #31	Lbr (ENSMUSG00000004880) #30	Dnah14 (ENSMUSG00000047369) #29	Ccdc121rt1 (ENSMUSG00000050625)	Cnih3 (ENSMUSG00000026514) #28	Wdr26 (ENSMUSG00000038733) #26	Cnih4 (ENSMUSG00000062169) #25	Nvl (ENSMUSG00000026516) #24	9130409I23Rik (ENSMUSG00000038768) #23	Ephx1 (ENSMUSG00000038776) #33	Tmem63a (ENSMUSG00000026519) #34	Lefty1 (ENSMUSG00000038793) #35
Ryukyu mouse	MODERN SPECIES		Hlx (MGP_CAROLIEiJ_G0015015)	1700056E22Rik (MGP_CAROLIEiJ_G0015014)	Dusp10 (MGP_CAROLIEiJ_G0015013)	Hhipl2 (MGP_CAROLIEiJ_G0015012) #8	MGP_CAROLIEiJ_G0015011 #9	MGP_CAROLIEiJ_G0015010 ##10	Aida (MGP_CAROLIEiJ_G0015009) #11	MGP_CAROLIEiJ_G0015008 #12	Disp1 (MGP_CAROLIEiJ_G0015007) #14	Tlr5 (MGP_CAROLIEiJ_G0015006)	Susd4 (MGP_CAROLIEiJ_G0015005) #15	Ccdc185 (MGP_CAROLIEiJ_G0015004) #16	Capn8 (MGP_CAROLIEiJ_G0015003) #18	MGP_CAROLIEiJ_G0015002 #19	Trp53bp2 (MGP_CAROLIEiJ_G0015001) #20	Fbxo28 (MGP_CAROLIEiJ_G0015000) #22	Degs1 (MGP_CAROLIEiJ_G0014999) #23	Vmn1r1 (MGP_CAROLIEiJ_G0014998)	Srp9 (MGP_CAROLIEiJ_G0014997) #32	Enah (MGP_CAROLIEiJ_G0014996) #31	Lbr (MGP_CAROLIEiJ_G0014995) #30	MGP_CAROLIEiJ_G0014994 #29	Ccdc121rt1 (MGP_CAROLIEiJ_G0014993)	Cnih3 (MGP_CAROLIEiJ_G0014992) #28	MGP_CAROLIEiJ_G0014991 #26	Cnih4 (MGP_CAROLIEiJ_G0014990) #25	Nvl (MGP_CAROLIEiJ_G0014989) #24	Ephx1 (MGP_CAROLIEiJ_G0014988) #33	Tmem63a (MGP_CAROLIEiJ_G0014987) #34	Pycr2 (MGP_CAROLIEiJ_G0014986) #36	MGP_CAROLIEiJ_G0014985 #35
Shrew mouse	MODERN SPECIES	18	Hlx (MGP_PahariEiJ_G0028247)	1700056E22Rik (MGP_PahariEiJ_G0028246)	Dusp10 (MGP_PahariEiJ_G0028245)	Hhipl2 (MGP_PahariEiJ_G0028244) #8	MGP_PahariEiJ_G0028243 #9	MGP_PahariEiJ_G0028242 #10	Aida (MGP_PahariEiJ_G0028241) #11	MGP_PahariEiJ_G0028240 #12	Disp1 (MGP_PahariEiJ_G0028239) #14	Tlr5 (MGP_PahariEiJ_G0028238)	Susd4 (MGP_PahariEiJ_G0028237) #15	Ccdc185 (MGP_PahariEiJ_G0028236) #16	Capn8 (MGP_PahariEiJ_G0028235) #18	Capn2 (MGP_PahariEiJ_G0028234) #19	Trp53bp2 (MGP_PahariEiJ_G0028233) #20	Fbxo28 (MGP_PahariEiJ_G0028232) #22	Degs1 (MGP_PahariEiJ_G0028231) #23	Vmn1r1 (MGP_PahariEiJ_G0028230)	Srp9 (MGP_PahariEiJ_G0028229) #32	Enah (MGP_PahariEiJ_G0028228) #31	Lbr (MGP_PahariEiJ_G0028227) #30	MGP_PahariEiJ_G0028226 #29	Ccdc121rt1 (MGP_PahariEiJ_G0028225)	Cnih3 (MGP_PahariEiJ_G0028224) #28	Wdr26 (MGP_PahariEiJ_G0028223) #26	Cnih4 (MGP_PahariEiJ_G0028222) #25	Nvl (MGP_PahariEiJ_G0028221) #24	9130409I23Rik (MGP_PahariEiJ_G0028220) #23	MGP_PahariEiJ_G0028219 #33	Tmem63a (MGP_PahariEiJ_G0028218) #34	Pycr2 (MGP_PahariEiJ_G0028217) #36
Rat	MODERN SPECIES	4	Hlx (ENSRNOG00000002309)	Dusp10 (ENSRNOG00000004003)	LOC100912365 (ENSRNOG00000004066)	Hhipl2 (ENSRNOG00000056400) #8	Taf1a (ENSRNOG00000061139) #9	Mia3 (ENSRNOG00000059202) #10	Aida (ENSRNOG00000058805) #11	Brox (ENSRNOG00000052963) #12	Disp1 (ENSRNOG00000003635) #14	Tlr5 (ENSRNOG00000022067)	Susd4 (ENSRNOG00000003562) #15	Ccdc185 (ENSRNOG00000022104) #16	Capn8 (ENSRNOG00000003468) #18	Capn2 (ENSRNOG00000034015) #19	Tp53bp2 (ENSRNOG00000003237) #20	Fbxo28 (ENSRNOG00000000066) #22	Degs1 (ENSRNOG00000003223) #23	Srp9 (ENSRNOG00000003211) #32	Enah (ENSRNOG00000031934) #31	Lbr (ENSRNOG00000052574) #30	Dnah14 (ENSRNOG00000070092) #29	Ccdc121rt (ENSRNOG00000022717)	Cnih3 (ENSRNOG00000022724) #28	Wdr26 (ENSRNOG00000003723) #26	Cnih4 (ENSRNOG00000003717) #25	Nvl (ENSRNOG00000003629) #24	RGD1564463 (ENSRNOG00000003601) #23	LOC498300 (ENSRNOG00000050163) #23	Ephx1 (ENSRNOG00000003515) #33	Tmem63a (ENSRNOG00000003310) #34	Lefty1 (ENSRNOG00000003263) #35
Upper Galilee mountains blind mole rat	MODERN SPECIES	1848	Mtarc1 (ENSNGAG00000014845)	Hlx (ENSNGAG00000011803)	Dusp10 (ENSNGAG00000010906)	ENSNGAG00000016789	Hhipl2 (ENSNGAG00000001214) #8	Taf1a (ENSNGAG00000003855) #9	ENSNGAG00000009217 #10	Aida (ENSNGAG00000000252) #11	Brox (ENSNGAG00000020768) #12	Disp1 (ENSNGAG00000006522) #14	Tlr5 (ENSNGAG00000003846)	Susd4 (ENSNGAG00000012710) #15	Capn8 (ENSNGAG00000018681) #18	Capn2 (ENSNGAG00000015328) #19	Trp53bp2 (ENSNGAG00000009097) #20	Fbxo28 (ENSNGAG00000006798) #22	ENSNGAG00000020306 #23	Srp9 (ENSNGAG00000019936) #32	Enah (ENSNGAG00000006232) #31	Lbr (ENSNGAG00000003588) #30	ENSNGAG00000000274	Cnih3 (ENSNGAG00000016605) #28	Wdr26 (ENSNGAG00000019715) #26	Cnih4 (ENSNGAG00000018004) #25	Nvl (ENSNGAG00000016481) #24
Lesser Egyptian jerboa	MODERN SPECIES	51	ENSJJAG00000010379	Cr1l (ENSJJAG00000022966)	ENSJJAG00000012961	Ptchd3 (ENSJJAG00000024292)	Taf1a (ENSJJAG00000006299) #9	ENSJJAG00000022254 #10	Aida (ENSJJAG00000023815) #11	Brox (ENSJJAG00000007298) #12	Disp1 (ENSJJAG00000015868) #14	Susd4 (ENSJJAG00000017970) #15	Ccdc185 (ENSJJAG00000021530) #16	ENSJJAG00000000764	Capn8 (ENSJJAG00000017277) #18	Capn2 (ENSJJAG00000012528) #19	Trp53bp2 (ENSJJAG00000023990) #20	Fbxo28 (ENSJJAG00000010586) #22	ENSJJAG00000015313 #23	Srp9 (ENSJJAG00000016583) #32	Enah (ENSJJAG00000023846) #31	ENSJJAG00000023116	ENSJJAG00000007609	Dnah14 (ENSJJAG00000023244) #29	Cnih3 (ENSJJAG00000023601) #28	Wdr26 (ENSJJAG00000019959) #26	ENSJJAG00000020517 #25	Nvl (ENSJJAG00000003012) #24	ENSJJAG00000000689 #23	ENSJJAG00000022098	Ephx1 (ENSJJAG00000022906) #33	Tmem63a (ENSJJAG00000016345) #34	ENSJJAG00000009374 #35
Kangaroo rat	DUPLICATION
Kangaroo rat	MODERN SPECIES	345	ENSDORG00000003656	ENSDORG00000027102	Hhipl2 (ENSDORG00000029474) #8	Taf1a (ENSDORG00000016042) #9	ENSDORG00000000970 #10	Aida (ENSDORG00000000982) #11	Brox (ENSDORG00000024726) #12	Disp1 (ENSDORG00000001710) #14	Tlr5 (ENSDORG00000027996)	Susd4 (ENSDORG00000012702) #15	ENSDORG00000012704 #16	Capn8 (ENSDORG00000012143) #18	Capn2 (ENSDORG00000013919) #19	Trp53bp2 (ENSDORG00000013922) #20	ENSDORG00000024350	ENSDORG00000024805 #22	ENSDORG00000004350 #23	Fcgr1 (ENSDORG00000016350)	H2bc18 (ENSDORG00000028945)	ENSDORG00000029688	ENSDORG00000028205	ENSDORG00000025650	ENSDORG00000028881	ENSDORG00000028335	H2ac20 (ENSDORG00000024205)	H2ac21 (ENSDORG00000024245)	Bola1 (ENSDORG00000016364)	Sv2a (ENSDORG00000016365)	Sf3b4 (ENSDORG00000016366)	Mtmr11 (ENSDORG00000016368)	Otud7b (ENSDORG00000005008)
Kangaroo rat	MODERN SPECIES	328	Ttpa (ENSDORG00000016475)	Ggh (ENSDORG00000015118)	Nkain3 (ENSDORG00000014155)	ENSDORG00000029746	Clvs1 (ENSDORG00000016281)	Chd7 (ENSDORG00000003515)	Rab2a (ENSDORG00000025014)	Car8 (ENSDORG00000007914)	Tox (ENSDORG00000011389)	Nsmaf (ENSDORG00000006742)	Sdcbp (ENSDORG00000006741)	Cyp7a1 (ENSDORG00000004649)	Ubxn2b (ENSDORG00000005860)	ENSDORG00000026451	Fam110b (ENSDORG00000015721)	ENSDORG00000025951 #22	Bpnt2 (ENSDORG00000015489)	Penk (ENSDORG00000011721)	Sdr16c6 (ENSDORG00000026488)	Sdr16c5 (ENSDORG00000004594)	ENSDORG00000025931	Chchd7 (ENSDORG00000004592)	Plag1 (ENSDORG00000011524)	ENSDORG00000029409	Rps20 (ENSDORG00000005794)	Lyn (ENSDORG00000000747)	Tgs1 (ENSDORG00000012484)	ENSDORG00000012483	Xkr4 (ENSDORG00000005763)	Rp1 (ENSDORG00000009139)	Sox17 (ENSDORG00000027735)
Rodentia_A	ANCESTRAL SPECIES		ENSGT00940000157671	ENSGT00520000058292	ENSGT00940000161139 #8	ENSGT00390000011405 #9	ENSGT00950000182767.a.a #10	ENSGT00390000016465 #11	ENSGT00390000006681 #12	ENSGT00390000016736.b #13	ENSGT00940000157407 #14	ENSGT00940000162464	ENSGT00940000160410 #15	ENSGT00740000115684 #16	ENSGT00940000160090 #18	ENSGT00940000154784.D.a.b #19	ENSGT00940000153463.b #20	ENSGT00390000002970 #22	ENSGT00390000013448.a.a #23	ENSGT00570000079239 #24	ENSGT00950000182834.B #25	ENSGT00940000153634.b #26	ENSGT00950000182834.A.a.b.c #28	ENSGT00390000000412	ENSGT00940000160505 #29	ENSGT00390000000417.a.a.b.a.b #30	ENSGT00940000157376 #31	ENSGT00390000018505.b #32	ENSGT00390000002210.d #33	ENSGT00940000159576 #34	ENSGT00950000183044.a.a.a.c #36	ENSGT00390000010056 #35	ENSGT00530000063402.b
Sciuridae	ANCESTRAL SPECIES		ENSGT00940000157671	ENSGT00520000058292	ENSGT00940000161139 #8	ENSGT00390000011405 #9	ENSGT00950000182767.a.a #10	ENSGT00390000016465 #11	ENSGT00390000006681.c #12	ENSGT00390000016736.b #13	ENSGT00940000157407 #14	ENSGT00940000162464	ENSGT00940000160410 #15	ENSGT00740000115684 #16	ENSGT00940000160090 #18	ENSGT00940000154784.D.a.b #19	ENSGT00940000153463.b #20	ENSGT00390000002970 #22	ENSGT00390000013448.a.a #23	ENSGT00570000079239 #24	ENSGT00950000182834.B #25	ENSGT00940000153634.b #26	ENSGT00950000182834.A.a.b.c #28	ENSGT00390000000412	ENSGT00940000160505 #29	ENSGT00390000000417.a.a.b.a.b #30	ENSGT00940000157376 #31	ENSGT00390000018505.b #32	ENSGT00390000002210.d #33	ENSGT00940000159576 #34	ENSGT00390000010056.db #35	ENSGT00950000183044.a.a.a.c #36	ENSGT00390000010056.eb #35
Marmotini	ANCESTRAL SPECIES	21	ENSGT00940000157671	ENSGT00520000058292	ENSGT00940000161139 #8	ENSGT00390000011405 #9	ENSGT00950000182767.a.a #10	ENSGT00390000016465 #11	ENSGT00390000006681.c #12	ENSGT00940000157407 #14	ENSGT00940000162464	ENSGT00940000160410 #15	ENSGT00740000115684 #16	ENSGT00940000160090 #18	ENSGT00940000170327	ENSGT00940000154784.D.a.b #19	ENSGT00940000153463.b #20	ENSGT00390000002970 #22	ENSGT00390000013448.a.a.m.a #23	ENSGT00390000013448.a.a.n #23	ENSGT00570000079239 #24	ENSGT00950000182834.B #25	ENSGT00940000153634.b #26	ENSGT00950000182834.A.a.b.c #28	ENSGT00390000000412	ENSGT00940000160505 #29	ENSGT00390000000417.a.a.b.a.b #30	ENSGT00940000157376 #31	ENSGT00390000018505.b #32	ENSGT00390000002210.d #33	ENSGT00940000159576 #34	ENSGT00390000010056.db #35	ENSGT00950000183044.a.a.a.c #36
Marmotini_b	ANCESTRAL SPECIES	84							ENSGT00390000006681.c #12	ENSGT00940000157407 #14	ENSGT00940000162464	ENSGT00940000160410 #15	ENSGT00740000115684 #16	ENSGT00940000160090 #18	ENSGT00940000170327	ENSGT00940000154784.D.a.b #19	ENSGT00940000153463.b #20	ENSGT00390000002970 #22	ENSGT00390000013448.a.a.m.a #23	ENSGT00390000013448.a.a.n #23	ENSGT00570000079239 #24	ENSGT00950000182834.B #25	ENSGT00940000153634.b #26	ENSGT00950000182834.A.a.b.c #28	ENSGT00940000160505 #29	ENSGT00390000000417.a.a.b.a.b #30	ENSGT00940000157376 #31	ENSGT00390000018505.b #32	ENSGT00390000002210.d #33	ENSGT00940000159576 #34	ENSGT00390000010056.db #35	ENSGT00950000183044.a.a.a.c #36	ENSGT00390000010056.eb #35
Squirrel	MODERN SPECIES	126								BROX (ENSSTOG00000003082) #12	DISP1 (ENSSTOG00000020721) #14	TLR5 (ENSSTOG00000022418)	SUSD4 (ENSSTOG00000010457) #15	CCDC185 (ENSSTOG00000020619) #16	CAPN8 (ENSSTOG00000010479) #18	CAPN2 (ENSSTOG00000009370) #19	TP53BP2 (ENSSTOG00000009398) #20	FBXO28 (ENSSTOG00000009419) #22	ENSSTOG00000025481 #23	ENSSTOG00000021334	ENSSTOG00000031649 #23	NVL (ENSSTOG00000014728) #24	CNIH4 (ENSSTOG00000027396) #25	WDR26 (ENSSTOG00000021796) #26	CNIH3 (ENSSTOG00000028458) #28	DNAH14 (ENSSTOG00000021317) #29	LBR (ENSSTOG00000005936) #30	ENAH (ENSSTOG00000028215) #31	SRP9 (ENSSTOG00000026827) #32	EPHX1 (ENSSTOG00000026627) #33	TMEM63A (ENSSTOG00000028603) #34	ENSSTOG00000024360 #35	PYCR2 (ENSSTOG00000026618) #36
Arctic ground squirrel	MODERN SPECIES	351							BROX (ENSUPAG00010010975) #12	DISP1 (ENSUPAG00010010957) #14	TLR5 (ENSUPAG00010010950)	SUSD4 (ENSUPAG00010010944) #15	CCDC185 (ENSUPAG00010010940) #16	CAPN8 (ENSUPAG00010010898) #18	ENSUPAG00010010888	CAPN2 (ENSUPAG00010010876) #19	TP53BP2 (ENSUPAG00010010858) #20	FBXO28 (ENSUPAG00010010849) #22	ENSUPAG00010010846	ENSUPAG00010010845	DEGS1 (ENSUPAG00010010835) #23	NVL (ENSUPAG00010010793) #24	ENSUPAG00010010774 #25	WDR26 (ENSUPAG00010010739) #26	CNIH3 (ENSUPAG00010010721) #28
Alpin marmot	MODERN SPECIES	12	ENSMMMG00000024176	TAF1A (ENSMMMG00000024175) #9	MIA3 (ENSMMMG00000024174) #10	ENSMMMG00000024173 #11	ENSMMMG00000024172 #12	ENSMMMG00000024171	ENSMMMG00000024170	DISP1 (ENSMMMG00000024169) #14	TLR5 (ENSMMMG00000024168)	SUSD4 (ENSMMMG00000024167) #15	CCDC185 (ENSMMMG00000024166) #16	CAPN8 (ENSMMMG00000024165) #18	ENSMMMG00000024163	CAPN2 (ENSMMMG00000024162) #19	TP53BP2 (ENSMMMG00000024161) #20	FBXO28 (ENSMMMG00000024160) #22	DEGS1 (ENSMMMG00000024159) #23	ENSMMMG00000024157	ENSMMMG00000024156	NVL (ENSMMMG00000024155) #24	CNIH4 (ENSMMMG00000024154) #25	WDR26 (ENSMMMG00000024153) #26	CNIH3 (ENSMMMG00000024152) #28	ENSMMMG00000024151	ENSMMMG00000024150 #29	ENSMMMG00000024149 #29	LBR (ENSMMMG00000024148) #30	ENAH (ENSMMMG00000024082) #31	SRP9 (ENSMMMG00000024080) #32	EPHX1 (ENSMMMG00000024079) #33	TMEM63A (ENSMMMG00000024078) #34
Eurasian red squirrel	MODERN SPECIES	3	MIA3 (ENSSVLG00005017865) #10	ENSSVLG00005017780	ENSSVLG00005017761	ENSSVLG00005017706	ENSSVLG00005017467 #11	ENSSVLG00005017010 #12	FAM177B (ENSSVLG00005016899) #13	DISP1 (ENSSVLG00005016863) #14	TLR5 (ENSSVLG00005016843)	ENSSVLG00005016801	SUSD4 (ENSSVLG00005016664) #15	CCDC185 (ENSSVLG00005016646) #16	CAPN8 (ENSSVLG00005016359) #18	CAPN2 (ENSSVLG00005016131) #19	TP53BP2 (ENSSVLG00005015950) #20	FBXO28 (ENSSVLG00005015889) #22	ENSSVLG00005015831	ENSSVLG00005015789	DEGS1 (ENSSVLG00005015737) #23	NVL (ENSSVLG00005014283) #24	CNIH4 (ENSSVLG00005013000) #25	WDR26 (ENSSVLG00005012677) #26	CNIH3 (ENSSVLG00005012576) #28	ENSSVLG00005012453	ENSSVLG00005012320 #29	ENSSVLG00005012197 #29	LBR (ENSSVLG00005012135) #30	ENSSVLG00005011796	ENSSVLG00005011720	ENSSVLG00005011663	ENSSVLG00005011588
Hystricomorpha	ANCESTRAL SPECIES	49	ENSGT00940000159665	ENSGT00940000162410	ENSGT00950000183093.C	ENSGT00940000157671	ENSGT00940000161139 #8	ENSGT00390000011405 #9	ENSGT00950000182767.a.a #10	ENSGT00390000016465 #11	ENSGT00390000006681 #12	ENSGT00940000157407 #14	ENSGT00940000162464	ENSGT00940000160410 #15	ENSGT00940000160090 #18	ENSGT00940000154784.D.a.b #19	ENSGT00940000153463.b #20	ENSGT00390000002970 #22	ENSGT00390000013448.a.a #23	ENSGT00570000079239 #24	ENSGT00950000182834.B #25	ENSGT00940000153634.b #26	ENSGT00950000182834.A.a.b.c #28	ENSGT00390000000417.a.a.b.a.b #30	ENSGT00940000157376 #31	ENSGT00390000018505.b #32	ENSGT00390000002210.d #33	ENSGT00940000159576 #34
Naked mole-rat female	MODERN SPECIES	16	MARK1 (ENSHGLG00000013879)	MTARC2 (ENSHGLG00000018981)	MTARC1 (ENSHGLG00000019512)	ENSHGLG00000019515	ENSHGLG00000021274	ENSHGLG00000040513	TAF1A (ENSHGLG00000002128) #9	ENSHGLG00000050020	ENSHGLG00000002633 #10	ENSHGLG00000001802 #11	BROX (ENSHGLG00000050550) #12	ENSHGLG00000038599	ENSHGLG00000033303 #19	ENSHGLG00000038855 ##19	ENSHGLG00000034481 #20	FBXO28 (ENSHGLG00000041532) #22	DEGS1 (ENSHGLG00000034588) #23	NVL (ENSHGLG00000002288) #24	CNIH4 (ENSHGLG00000002779) #25	ENSHGLG00000003040 #26	ENSHGLG00000002537 #34	ENSHGLG00000003752 #33	ENSHGLG00000008818	ENSHGLG00000050685 #32
Hystricomorpha_a	ANCESTRAL SPECIES	13	ENSGT00940000159665	ENSGT00940000162410	ENSGT00950000183093.C	ENSGT00940000157671	ENSGT00940000161139 #8	ENSGT00390000011405 #9	ENSGT00950000182767.a.a #10	ENSGT00390000016465 #11	ENSGT00390000006681 #12	ENSGT00940000157407 #14	ENSGT00940000162464	ENSGT00940000160410 #15	ENSGT00940000160090 #18	ENSGT00940000154784.D.a.b #19	ENSGT00940000153463.b #20	ENSGT00390000002970 #22	ENSGT00390000013448.a.a #23	ENSGT00570000079239 #24	ENSGT00950000182834.B #25	ENSGT00940000153634.b #26	ENSGT00950000182834.A.a.b.c #28	ENSGT00940000160505 #29	ENSGT00940000165801	ENSGT00940000157376 #31	ENSGT00390000018505.b #32	ENSGT00390000002210.d #33	ENSGT00940000159576 #34
Guinea pig	MODERN SPECIES	13	RAB3GAP2 (ENSCPOG00000008416)	MARK1 (ENSCPOG00000002730)	MTARC2 (ENSCPOG00000027303)	MTARC1 (ENSCPOG00000036776)	HLX (ENSCPOG00000024028)	DUSP10 (ENSCPOG00000013232)	TAF1A (ENSCPOG00000007867) #9	MIA3 (ENSCPOG00000007872) #10	AIDA (ENSCPOG00000007889) #11	BROX (ENSCPOG00000013599) #12	DISP1 (ENSCPOG00000031875) #14	ENSCPOG00000022737 #11	ENSCPOG00000024119 #18	CAPN2 (ENSCPOG00000021723) #19	TP53BP2 (ENSCPOG00000024636) #20	FBXO28 (ENSCPOG00000031291) #22	DEGS1 (ENSCPOG00000008694) #23	NVL (ENSCPOG00000037869) #24	CNIH4 (ENSCPOG00000036624) #25	WDR26 (ENSCPOG00000007318) #26	CNIH3 (ENSCPOG00000027478) #28
Hystricomorpha_b	ANCESTRAL SPECIES	4	ENSGT00940000159665	ENSGT00940000162410	ENSGT00950000183093.C	ENSGT00940000157671	ENSGT00940000161139 #8	ENSGT00390000011405 #9	ENSGT00950000182767.a.a #10	ENSGT00390000016465 #11	ENSGT00390000006681 #12	ENSGT00940000157407 #14	ENSGT00940000162464	ENSGT00940000160410 #15	ENSGT00940000160090 #18	ENSGT00940000154784.D.a.b #19	ENSGT00940000153463.b #20	ENSGT00390000002970 #22	ENSGT00390000013448.a.a #23	ENSGT00570000079239 #24	ENSGT00950000182834.B #25	ENSGT00940000153634.b #26	ENSGT00950000182834.A.a.b.c #28	ENSGT00940000165801	ENSGT00940000157376 #31	ENSGT00390000018505.b #32	ENSGT00390000002210.d #33
Long-tailed chinchilla	MODERN SPECIES	227	MTARC2 (ENSCLAG00000003056)	MTARC1 (ENSCLAG00000002988)	HLX (ENSCLAG00000002944)	DUSP10 (ENSCLAG00000002918)	HHIPL2 (ENSCLAG00000002876) #8	TAF1A (ENSCLAG00000002799) #9	MIA3 (ENSCLAG00000002599) #10	AIDA (ENSCLAG00000002553) #11	BROX (ENSCLAG00000002510) #12	DISP1 (ENSCLAG00000002480) #14	TLR5 (ENSCLAG00000017491)	SUSD4 (ENSCLAG00000002377) #15	ENSCLAG00000002333 #18	CAPN2 (ENSCLAG00000002282) #19	TP53BP2 (ENSCLAG00000002215) #20	FBXO28 (ENSCLAG00000002181) #22	DEGS1 (ENSCLAG00000002172) #23	ENSCLAG00000017627	NVL (ENSCLAG00000002134) #24	CNIH4 (ENSCLAG00000002095) #25	WDR26 (ENSCLAG00000002079) #26	CNIH3 (ENSCLAG00000002062) #28	ENSCLAG00000002048	ENSCLAG00000001553	ENSCLAG00000001532	ENAH (ENSCLAG00000001466) #31	ENSCLAG00000001368 #32	EPHX1 (ENSCLAG00000001352) #33
Degu	DUPLICATION
Degu	MODERN SPECIES	58	ENSODEG00000016536	MARK1 (ENSODEG00000014668)	MTARC2 (ENSODEG00000014768)	MTARC1 (ENSODEG00000014242)	HLX (ENSODEG00000014661)	DUSP10 (ENSODEG00000014856)	HHIPL2 (ENSODEG00000014714) #8	TAF1A (ENSODEG00000014413) #9	AIDA (ENSODEG00000014752) #11	BROX (ENSODEG00000014324) #12	DISP1 (ENSODEG00000014608) #14	SUSD4 (ENSODEG00000015602) #15	ENSODEG00000015314 #18	CAPN2 (ENSODEG00000014888) #19	TP53BP2 (ENSODEG00000014627) #20	ENSODEG00000015647 #22	ENSODEG00000015588 #22	DEGS1 (ENSODEG00000014645) #23	NVL (ENSODEG00000015119) #24	CNIH4 (ENSODEG00000014547) #25	WDR26 (ENSODEG00000014639) #26	CNIH3 (ENSODEG00000015526) #28	ENSODEG00000015198	ENAH (ENSODEG00000014853) #31	ENSODEG00000015075 #32	EPHX1 (ENSODEG00000014812) #33	ENSODEG00000016922	ENSODEG00000014810
Degu	MODERN SPECIES	58	MARK1 (ENSODEG00000014668)	MTARC2 (ENSODEG00000014768)	MTARC1 (ENSODEG00000014242)	HLX (ENSODEG00000014661)	DUSP10 (ENSODEG00000014856)	HHIPL2 (ENSODEG00000014714) #8	TAF1A (ENSODEG00000014413) #9	AIDA (ENSODEG00000014752) #11	BROX (ENSODEG00000014324) #12	DISP1 (ENSODEG00000014608) #14	SUSD4 (ENSODEG00000015602) #15	ENSODEG00000015314 #18	CAPN2 (ENSODEG00000014888) #19	TP53BP2 (ENSODEG00000014627) #20	ENSODEG00000015647 #22	ENSODEG00000015588 #22	DEGS1 (ENSODEG00000014645) #23	NVL (ENSODEG00000015119) #24	CNIH4 (ENSODEG00000014547) #25	WDR26 (ENSODEG00000014639) #26	CNIH3 (ENSODEG00000015526) #28	ENSODEG00000015198	ENAH (ENSODEG00000014853) #31	ENSODEG00000015075 #32	EPHX1 (ENSODEG00000014812) #33	ENSODEG00000016922	ENSODEG00000014810
Laurasiatheria	ANCESTRAL SPECIES	28	ENSGT00940000157671	ENSGT00940000161139 #8	ENSGT00390000011405 #9	ENSGT00950000182767.b.b.c.b.a ##10	ENSGT00950000182767.a.a #10	ENSGT00390000016465 #11	ENSGT00390000006681 #12	ENSGT00390000016736.b #13	ENSGT00940000157407 #14	ENSGT00940000162464	ENSGT00940000160410 #15	ENSGT00740000115684 #16	ENSGT00940000160090 #18	ENSGT00940000154784.D.a.b #19	ENSGT00940000153463.b #20	ENSGT00390000002970 #22	ENSGT00390000013448.a.a #23	ENSGT00570000079239 #24	ENSGT00950000182834.B #25	ENSGT00940000153634.b #26	ENSGT00950000182834.A.a.b.c #28	ENSGT00390000000412	ENSGT00940000160505 #29	ENSGT00390000000417.a.a.b.a.b #30	ENSGT00940000157376 #31	ENSGT00390000018505.b #32	ENSGT00390000002210.d #33	ENSGT00940000159576 #34	ENSGT00950000183044.a.a.a.c #36	ENSGT00390000010056 #35	ENSGT00530000063402.b
Eulipotyphla	ANCESTRAL SPECIES	1649																ENSGT00390000002970 #22	ENSGT00390000013448.a.a #23
Common shrew	MODERN SPECIES	12270																FBXO28 (ENSSARG00000007000) #22	DEGS1 (ENSSARG00000007006) #23
Hedgehog	MODERN SPECIES	4071																FBXO28 (ENSEEUG00000000411) #22
Laurasiatheria_a	ANCESTRAL SPECIES		ENSGT00940000157671	ENSGT00940000161139 #8	ENSGT00390000011405 #9	ENSGT00950000182767.b.b.c.b.a ##10	ENSGT00950000182767.a.a #10	ENSGT00390000016465 #11	ENSGT00390000006681 #12	ENSGT00390000016736.b #13	ENSGT00940000157407 #14	ENSGT00940000162464	ENSGT00940000160410 #15	ENSGT00740000115684 #16	ENSGT00940000160090 #18	ENSGT00940000154784.D.a.b #19	ENSGT00940000153463.b #20	ENSGT00390000002970 #22	ENSGT00390000013448.a.a #23	ENSGT00570000079239 #24	ENSGT00950000182834.B #25	ENSGT00940000153634.b #26	ENSGT00950000182834.A.a.b.c #28	ENSGT00390000000412	ENSGT00940000160505 #29	ENSGT00390000000417.a.a.b.a.b #30	ENSGT00940000157376 #31	ENSGT00390000018505.b #32	ENSGT00390000002210.d #33	ENSGT00940000159576 #34	ENSGT00950000183044.a.a.a.c #36	ENSGT00390000010056 #35	ENSGT00530000063402.b
Laurasiatheria_b	ANCESTRAL SPECIES		ENSGT00950000183093.C	ENSGT00940000157671	ENSGT00940000161139 #8	ENSGT00390000011405 #9	ENSGT00950000182767.a.a #10	ENSGT00390000016465 #11	ENSGT00390000006681 #12	ENSGT00390000016736.b #13	ENSGT00940000157407 #14	ENSGT00940000162464	ENSGT00940000160410 #15	ENSGT00740000115684 #16	ENSGT00940000160090 #18	ENSGT00940000154784.D.a.b #19	ENSGT00940000153463.b #20	ENSGT00390000002970 #22	ENSGT00390000013448.a.a #23	ENSGT00570000079239 #24	ENSGT00950000182834.B #25	ENSGT00940000153634.b #26	ENSGT00950000182834.A.a.b.c #28	ENSGT00390000000412	ENSGT00940000160505 #29	ENSGT00390000000417.a.a.b.a.b #30	ENSGT00940000157376 #31	ENSGT00390000018505.b #32	ENSGT00390000002210.d #33	ENSGT00940000159576 #34	ENSGT00950000183044.a.a.a.c #36	ENSGT00390000010056 #35	ENSGT00530000063402.b
Laurasiatheria_c	ANCESTRAL SPECIES	25	ENSGT00950000183093.C	ENSGT00940000157671	ENSGT00940000161139 #8	ENSGT00390000011405 #9	ENSGT00950000182767.a.a #10	ENSGT00390000016465 #11	ENSGT00390000006681 #12	ENSGT00390000016736.b #13	ENSGT00940000157407 #14	ENSGT00940000162464	ENSGT00940000160410 #15	ENSGT00740000115684 #16	ENSGT00940000160090 #18	ENSGT00940000154784.D.a.b #19	ENSGT00940000153463.b #20	ENSGT00390000002970 #22	ENSGT00390000013448.a.a #23	ENSGT00570000079239 #24	ENSGT00950000182834.B #25	ENSGT00940000153634.b #26	ENSGT00950000182834.A.a.b.c #28	ENSGT00940000160505 #29	ENSGT00390000000417.a.a.b.a.b #30	ENSGT00940000157376 #31	ENSGT00390000018505.b #32	ENSGT00390000002210.d #33	ENSGT00940000159576 #34	ENSGT00950000183044.a.a.a.c #36	ENSGT00390000010056 #35	ENSGT00530000063402.b	ENSGT01100000263504.a.b.b.a.b
Equus	ANCESTRAL SPECIES	41	ENSGT00390000004585	ENSGT00940000157560.e	ENSGT00390000005794	ENSGT00550000074910	ENSGT00940000157359	ENSGT00390000016465 #11	ENSGT00390000006681 #12	ENSGT00390000016736.b #13	ENSGT00940000157407 #14	ENSGT00940000162464	ENSGT00940000160410 #15	ENSGT00740000115684 #16	ENSGT00940000160090 #18	ENSGT00940000154784.D.a.b #19	ENSGT00940000153463.b #20	ENSGT00390000002970 #22	ENSGT00390000013448.a.a #23	ENSGT00570000079239 #24	ENSGT00950000182834.B #25	ENSGT00940000153634.b #26	ENSGT00950000182834.A.a.b.c #28	ENSGT00940000160505 #29	ENSGT00390000000417.a.a.b.a.b #30	ENSGT00940000157376 #31	ENSGT00390000018505.b #32	ENSGT00390000002210.d #33	ENSGT00940000159576 #34	ENSGT00390000010056.lc #35	ENSGT00950000183044.a.a.a.c #36	ENSGT00390000010056.mc #35	ENSGT00530000063402.b
Horse	MODERN SPECIES	23	MARK1 (ENSECAG00000024459)	RAB3GAP2 (ENSECAG00000018276)	IARS2 (ENSECAG00000022576)	BPNT1 (ENSECAG00000021210)	AIDA (ENSECAG00000011087) #11	BROX (ENSECAG00000018547) #12	FAM177B (ENSECAG00000017187) #13	DISP1 (ENSECAG00000014440) #14	TLR5 (ENSECAG00000036553)	SUSD4 (ENSECAG00000012550) #15	CCDC185 (ENSECAG00000028710) #16	CAPN8 (ENSECAG00000018301) #18	ENSECAG00000055995	CAPN2 (ENSECAG00000008742) #19	TP53BP2 (ENSECAG00000005927) #20	FBXO28 (ENSECAG00000002428) #22	DEGS1 (ENSECAG00000000186) #23	NVL (ENSECAG00000014421) #24	CNIH4 (ENSECAG00000010873) #25	WDR26 (ENSECAG00000020139) #26	CNIH3 (ENSECAG00000019237) #28	ENSECAG00000060177	DNAH14 (ENSECAG00000044830) #29	LBR (ENSECAG00000011192) #30	ENAH (ENSECAG00000022447) #31	SRP9 (ENSECAG00000054865) ##32	EPHX1 (ENSECAG00000019677) #33	TMEM63A (ENSECAG00000018566) #34	ENSECAG00000039385 #35	PYCR2 (ENSECAG00000010882) #36	ENSECAG00000038401 #35
Donkey	MODERN SPECIES	23	RAB3GAP2 (ENSEASG00005006420)	IARS2 (ENSEASG00005007698)	ENSEASG00005007702	ENSEASG00005023673 #10	ENSEASG00005027030 #10	ENSEASG00005013758 #11	BROX (ENSEASG00005013750) #12	FAM177B (ENSEASG00005035019) #13	DISP1 (ENSEASG00005013741) #14	TLR5 (ENSEASG00005013736)	SUSD4 (ENSEASG00005013732) #15	CCDC185 (ENSEASG00005027749) #16	CAPN8 (ENSEASG00005013672) #18	CAPN2 (ENSEASG00005013647) #19	TP53BP2 (ENSEASG00005013621) #20	FBXO28 (ENSEASG00005013614) #22	DEGS1 (ENSEASG00005013608) #23	NVL (ENSEASG00005013599) #24	CNIH4 (ENSEASG00005013594) #25	WDR26 (ENSEASG00005013590) #26	CNIH3 (ENSEASG00005038744) #28	DNAH14 (ENSEASG00005033325) #29	LBR (ENSEASG00005013556) #30	ENAH (ENSEASG00005013528) #31	ENSEASG00005013509 #32	EPHX1 (ENSEASG00005013496) #33	TMEM63A (ENSEASG00005013377) #34	ENSEASG00005025761 #35	PYCR2 (ENSEASG00005013358) #36	ENSEASG00005030091 #35	SDE2 (ENSEASG00005013356)
Chiroptera	ANCESTRAL SPECIES	30	ENSGT00950000183093.C	ENSGT00940000157671	ENSGT00940000161139 #8	ENSGT00390000011405 #9	ENSGT00950000182767.a.a #10	ENSGT00390000016465 #11	ENSGT00390000006681 #12	ENSGT00390000016736.b #13	ENSGT00940000157407 #14	ENSGT00940000162464	ENSGT00940000160410 #15	ENSGT00740000115684 #16	ENSGT00940000160090 #18	ENSGT00940000154784.D.a.b #19	ENSGT00940000153463.b #20	ENSGT00390000002970 #22	ENSGT00390000013448.a.a #23	ENSGT00570000079239 #24	ENSGT00950000182834.B #25	ENSGT00940000153634.b #26	ENSGT00950000182834.A.a.b.c #28	ENSGT00940000160505 #29	ENSGT00390000000417.a.a.b.a.b #30	ENSGT00940000157376 #31	ENSGT00390000018505.b #32	ENSGT00390000002210.d #33	ENSGT00940000159576 #34	ENSGT00950000183044.a.a.a.c #36	ENSGT00390000010056 #35	ENSGT00530000063402.b	ENSGT01100000263504.a.b.b.b.b
Megabat	MODERN SPECIES	1065																FBXO28 (ENSPVAG00000005217) #22	DEGS1 (ENSPVAG00000005222) #23
Microchiroptera	ANCESTRAL SPECIES	32	ENSGT00950000183093.C	ENSGT00940000157671	ENSGT00940000161139 #8	ENSGT00390000011405 #9	ENSGT00950000182767.a.a #10	ENSGT00390000016465 #11	ENSGT00390000006681 #12	ENSGT00390000016736.b #13	ENSGT00940000157407 #14	ENSGT00940000162464	ENSGT00940000160410 #15	ENSGT00740000115684 #16	ENSGT00940000160090 #18	ENSGT00940000154784.D.a.b #19	ENSGT00940000153463.b #20	ENSGT00390000002970 #22	ENSGT00390000013448.a.a #23	ENSGT00570000079239 #24	ENSGT00950000182834.B #25	ENSGT00940000153634.b #26	ENSGT00950000182834.A.a.b.c #28	ENSGT00940000160505 #29	ENSGT00390000000417.a.a.b.a.b #30	ENSGT00940000157376 #31	ENSGT00390000018505.b #32	ENSGT00390000002210.d #33	ENSGT00940000159576 #34	ENSGT00950000183044.a.a.a.c #36	ENSGT00390000010056 #35	ENSGT00530000063402.b	ENSGT01100000263504.a.b.b.b.b
Greater horseshoe bat	MODERN SPECIES	19	HLX (ENSRFEG00010021145)	DUSP10 (ENSRFEG00010021159)	HHIPL2 (ENSRFEG00010021170) #8	TAF1A (ENSRFEG00010021189) #9	MIA3 (ENSRFEG00010021210) #10	AIDA (ENSRFEG00010021263) #11	BROX (ENSRFEG00010021290) #12	FAM177B (ENSRFEG00010021306) #13	DISP1 (ENSRFEG00010021319) #14	TLR5 (ENSRFEG00010021339)	SUSD4 (ENSRFEG00010021351) #15	CCDC185 (ENSRFEG00010021366) #16	CAPN8 (ENSRFEG00010021382) #18	CAPN2 (ENSRFEG00010021418) #19	TP53BP2 (ENSRFEG00010021449) #20	FBXO28 (ENSRFEG00010021487) #22	DEGS1 (ENSRFEG00010021497) #23	NVL (ENSRFEG00010021511) #24	CNIH4 (ENSRFEG00010021549) #25	WDR26 (ENSRFEG00010021568) #26	CNIH3 (ENSRFEG00010021586) #28	DNAH14 (ENSRFEG00010021629) #29	LBR (ENSRFEG00010021686) #30	ENAH (ENSRFEG00010021710) #31	ENSRFEG00010021741 #32	EPHX1 (ENSRFEG00010021750) #33	TMEM63A (ENSRFEG00010021763) #34	ENSRFEG00010021782 #35	PYCR2 (ENSRFEG00010021788) #36	ENSRFEG00010021799 #35	SDE2 (ENSRFEG00010021807)
Microbat	MODERN SPECIES	1990																FBXO28 (ENSMLUG00000016782) #22	DEGS1 (ENSMLUG00000005827) #23	ENSMLUG00000003115 #24
Carnivora	ANCESTRAL SPECIES	14									ENSGT00940000157407 #14	ENSGT00940000162464	ENSGT00940000160410 #15	ENSGT00740000115684 #16	ENSGT00940000160090 #18	ENSGT00940000154784.D.a.b #19	ENSGT00940000153463.b #20	ENSGT00390000002970 #22	ENSGT00390000013448.a.a #23	ENSGT00570000079239 #24	ENSGT00950000182834.B #25	ENSGT00940000153634.b #26	ENSGT00950000182834.A.a.b.c #28	ENSGT00390000000412	ENSGT00940000160505 #29	ENSGT00390000000417.a.a.b.a.b #30	ENSGT00940000157376 #31	ENSGT00390000018505.b #32	ENSGT00390000002210.d #33	ENSGT00940000159576 #34	ENSGT00950000183044.a.a.a.c #36	ENSGT00390000010056 #35	ENSGT00530000063402.b
Felidae	ANCESTRAL SPECIES	11									ENSGT00940000157407 #14	ENSGT00940000162464	ENSGT00940000160410 #15	ENSGT00740000115684 #16	ENSGT00940000160090 #18	ENSGT00940000154784.D.a.b #19	ENSGT00940000153463.b #20	ENSGT00390000002970 #22	ENSGT00390000013448.a.a #23	ENSGT00570000079239 #24	ENSGT00950000182834.B #25	ENSGT00940000153634.b #26	ENSGT00950000182834.A.a.b.c #28	ENSGT00940000160505 #29	ENSGT00390000000417.a.a.b.a.b #30	ENSGT00940000157376 #31	ENSGT00390000018505.b #32	ENSGT00390000002210.d #33	ENSGT00940000159576 #34	ENSGT00950000183044.a.a.a.c #36	ENSGT00390000010056 #35	ENSGT00530000063402.b	ENSGT01100000263504.a.b.a.a
Cat	MODERN SPECIES	248									DISP1 (ENSFCAG00000027922) #14	TLR5 (ENSFCAG00000006835)	SUSD4 (ENSFCAG00000007356) #15	CCDC185 (ENSFCAG00000050667) #16	ENSFCAG00000010669 #18	CAPN2 (ENSFCAG00000010671) #19	TP53BP2 (ENSFCAG00000010673) #20	FBXO28 (ENSFCAG00000022457) #22	DEGS1 (ENSFCAG00000000202) #23	NVL (ENSFCAG00000009876) #24	CNIH4 (ENSFCAG00000038772) #25	WDR26 (ENSFCAG00000002464) #26	CNIH3 (ENSFCAG00000014101) #28	DNAH14 (ENSFCAG00000023988) #29	ENAH (ENSFCAG00000028416) #31	SRP9 (ENSFCAG00000010275) #32	EPHX1 (ENSFCAG00000006965) #33	TMEM63A (ENSFCAG00000044147) #34	ENSFCAG00000039160 #35	PYCR2 (ENSFCAG00000012541) #36	SDE2 (ENSFCAG00000015082)	ACBD3 (ENSFCAG00000030208)	LIN9 (ENSFCAG00000010528)
Panthera	ANCESTRAL SPECIES	19										ENSGT00940000157407 #14	ENSGT00940000162464	ENSGT00940000160410 #15	ENSGT00940000160090 #18	ENSGT00940000154784.D.a.b #19	ENSGT00940000153463.b #20	ENSGT00390000002970 #22	ENSGT00390000013448.a.a.v #23	ENSGT00570000079239 #24	ENSGT00950000182834.B #25	ENSGT00940000153634.b #26	ENSGT00950000182834.A.a.b.c #28	ENSGT00940000160505 #29	ENSGT00390000000417.a.a.b.a.b #30	ENSGT00940000157376 #31	ENSGT00390000018505.b #32	ENSGT00390000002210.d #33	ENSGT00940000159576 #34	ENSGT00950000183044.a.a.a.c #36	ENSGT00390000010056 #35	ENSGT00530000063402.b	ENSGT01100000263504.a.a.yb
Panthera_a	ANCESTRAL SPECIES	19										ENSGT00940000157407 #14	ENSGT00940000162464	ENSGT00940000160410 #15	ENSGT00940000160090 #18	ENSGT00940000154784.D.a.b #19	ENSGT00940000153463.b #20	ENSGT00390000002970 #22	ENSGT00390000013448.a.a.v #23	ENSGT00570000079239 #24	ENSGT00950000182834.B #25	ENSGT00940000153634.b #26	ENSGT00950000182834.A.a.b.c #28	ENSGT00940000160505 #29	ENSGT00390000000417.a.a.b.a.b #30	ENSGT00940000157376 #31	ENSGT00390000018505.b #32	ENSGT00390000002210.d #33	ENSGT00940000159576 #34	ENSGT00950000183044.a.a.a.c #36	ENSGT00390000010056 #35	ENSGT00530000063402.b	ENSGT01100000263504.a.a.yb
lion	MODERN SPECIES	17													ENSPLOG00000020961 #18	CAPN2 (ENSPLOG00000021009) #19	TP53BP2 (ENSPLOG00000021069) #20	FBXO28 (ENSPLOG00000021127) #22	DEGS1 (ENSPLOG00000021159) #23	NVL (ENSPLOG00000021217) #24	CNIH4 (ENSPLOG00000021368) #25	WDR26 (ENSPLOG00000021417) #26	CNIH3 (ENSPLOG00000021466) #28	DNAH14 (ENSPLOG00000021571) #29	LBR (ENSPLOG00000005582) #30	ENAH (ENSPLOG00000005749) #31	SRP9 (ENSPLOG00000005890) #32	EPHX1 (ENSPLOG00000005936) #33	TMEM63A (ENSPLOG00000006070) #34	PYCR2 (ENSPLOG00000006197) #36	SDE2 (ENSPLOG00000006268)	ENSPLOG00000006310	ACBD3 (ENSPLOG00000006338)
leopard	MODERN SPECIES	189										ENSPPRG00000019283 #14	TLR5 (ENSPPRG00000011323)	SUSD4 (ENSPPRG00000018418) #15	ENSPPRG00000018078 #18	CAPN2 (ENSPPRG00000017994) #19	TP53BP2 (ENSPPRG00000016459) #20	FBXO28 (ENSPPRG00000016159) #22	ENSPPRG00000016097 #23	NVL (ENSPPRG00000015745) #24	CNIH4 (ENSPPRG00000014936) #25	WDR26 (ENSPPRG00000014848) #26	CNIH3 (ENSPPRG00000014428) #28
Tiger	MODERN SPECIES	571									ENSPTIG00000013576	DISP1 (ENSPTIG00000013581) #14	TLR5 (ENSPTIG00000008848)	SUSD4 (ENSPTIG00000013598) #15	ENSPTIG00000013625 #18	ENSPTIG00000013650 #19	TP53BP2 (ENSPTIG00000013719) #20	FBXO28 (ENSPTIG00000013765) #22	DEGS1 (ENSPTIG00000013966) #23	NVL (ENSPTIG00000013981) #24	CNIH4 (ENSPTIG00000014093) #25	WDR26 (ENSPTIG00000014132) #26	CNIH3 (ENSPTIG00000014198) #28	DNAH14 (ENSPTIG00000014279) #29	LBR (ENSPTIG00000014694) #30	ENAH (ENSPTIG00000014773) #31	SRP9 (ENSPTIG00000014838) #32	ENSPTIG00000014848 #33	TMEM63A (ENSPTIG00000014886) #34	PYCR2 (ENSPTIG00000014933) #36	SDE2 (ENSPTIG00000015111)	ENSPTIG00000015121	ACBD3 (ENSPTIG00000015131)
Caniformia	ANCESTRAL SPECIES	10									ENSGT00940000157407 #14	ENSGT00940000162464	ENSGT00940000160410 #15	ENSGT00740000115684 #16	ENSGT00940000160090 #18	ENSGT00940000154784.D.a.b #19	ENSGT00940000153463.b #20	ENSGT00390000002970 #22	ENSGT00390000013448.a.a #23	ENSGT00570000079239 #24	ENSGT00950000182834.B #25	ENSGT00940000153634.b #26	ENSGT00950000182834.A.a.b.c #28	ENSGT00390000000412	ENSGT00940000160505 #29	ENSGT00390000000417.a.a.b.a.b #30	ENSGT00940000157376 #31	ENSGT00390000018505.b #32	ENSGT00390000002210.d #33	ENSGT00940000159576 #34	ENSGT00950000183044.a.a.a.c #36	ENSGT00390000010056 #35	ENSGT00530000063402.b
Canidae	ANCESTRAL SPECIES	1	ENSGT00940000158350	ENSGT00940000165681	ENSGT00940000162271	ENSGT00940000160963	ENSGT01030000234540.B.b.l	ENSGT01030000234540.B.b.k	ENSGT01050000244808.D.fb.b.a.a.a.b.b	ENSGT01050000244808.D.fb.b.a.a.a.a	ENSGT01050000244808.D.fb.b.b.b	ENSGT01050000244808.D.fb.b.a.b	ENSGT00940000161974	ENSGT01050000244808.D.fb.b.b.a	ENSGT00940000160090 #18	ENSGT00940000154784.D.a.b #19	ENSGT00940000153463.b #20	ENSGT00390000002970 #22	ENSGT00390000013448.a.a #23	ENSGT00570000079239 #24	ENSGT00950000182834.B #25	ENSGT00940000153634.b #26	ENSGT00950000182834.A.a.b.c #28	ENSGT00950000182891.a.a.b.a.a.a.b.a.a.x.a	ENSGT00390000000412	ENSGT00940000160505 #29	ENSGT00390000000417.a.a.b.a.b #30	ENSGT00940000157376 #31	ENSGT00390000018505.b #32	ENSGT00390000002210.d #33	ENSGT00940000159576 #34	ENSGT00950000183044.a.a.a.c #36	ENSGT00390000010056 #35
Canis_lupus	ANCESTRAL SPECIES	4	ENSGT00940000158350	ENSGT00940000165681	ENSGT00940000162271	ENSGT00940000160963	ENSGT01030000234540.B.b.l	ENSGT01030000234540.B.b.k	ENSGT01050000244808.D.fb.b.a.a.a.b.b	ENSGT01050000244808.D.fb.b.b.b	ENSGT00940000161974	ENSGT01050000244808.D.fb.b.b.a	ENSGT01050000244808.D.fb.b.a.a.a.a	ENSGT00940000160090 #18	ENSGT00940000154784.D.a.b #19	ENSGT00940000153463.b #20	ENSGT00950000183029.A.u.b	ENSGT00390000002970 #22	ENSGT00390000013448.a.a #23	ENSGT00570000079239 #24	ENSGT00950000182834.B #25	ENSGT00940000153634.b #26	ENSGT00950000182834.A.a.b.c #28	ENSGT00950000182891.a.a.b.a.a.a.b.a.a.x.a	ENSGT00950000183123.g.a.a.b	ENSGT00390000000412	ENSGT00940000160505 #29	ENSGT00390000000417.a.a.b.a.b #30	ENSGT00940000157376 #31	ENSGT00390000018505.b #32	ENSGT00390000002210.d #33	ENSGT00940000159576 #34	ENSGT00950000183044.a.a.a.c #36
Dog	MODERN SPECIES	35	ETV3L (ENSCAFG00845013961)	ETV3 (ENSCAFG00845013939)	ENSCAFG00845013888	ENSCAFG00845013836	ENSCAFG00845013811	ENSCAFG00845013789	FCRL4 (ENSCAFG00845013675)	FCRL2 (ENSCAFG00845013579)	FCRL1 (ENSCAFG00845013495)	CD5L (ENSCAFG00845013426)	ENSCAFG00845013378	ENSCAFG00845013276 #18	CAPN2 (ENSCAFG00845013136) #19	TP53BP2 (ENSCAFG00845013060) #20	ENSCAFG00845012978	FBXO28 (ENSCAFG00845012940) #22	DEGS1 (ENSCAFG00845012915) #23	ENSCAFG00845012857	NVL (ENSCAFG00845012656) #24	CNIH4 (ENSCAFG00845012452) #25	WDR26 (ENSCAFG00845012382) #26	CNIH3 (ENSCAFG00845012278) #28	ENSCAFG00845012260	ENSCAFG00845012247	DNAH14 (ENSCAFG00845011498) #29	LBR (ENSCAFG00845010980) #30	ENAH (ENSCAFG00845009892) #31	SRP9 (ENSCAFG00845009505) #32	EPHX1 (ENSCAFG00845009397) #33	TMEM63A (ENSCAFG00845009155) #34	ENSCAFG00845009114 #35
Dingo	MODERN SPECIES	271	ARHGEF11 (ENSCAFG00020003900)	ENSCAFG00020003830	ENSCAFG00020003825	ETV3 (ENSCAFG00020003819)	ENSCAFG00020003814	ENSCAFG00020003785	ENSCAFG00020003778	FCRL2 (ENSCAFG00020003774)	ENSCAFG00020003770	CD5L (ENSCAFG00020003767)	ENSCAFG00020003750	ENSCAFG00020003741 #18	CAPN2 (ENSCAFG00020003732) #19	TP53BP2 (ENSCAFG00020003710) #20	ENSCAFG00020003697	FBXO28 (ENSCAFG00020003694) #22	DEGS1 (ENSCAFG00020003693) #23	ENSCAFG00020003689	NVL (ENSCAFG00020003680) #24	CNIH4 (ENSCAFG00020003678) #25	WDR26 (ENSCAFG00020003429) #26	CNIH3 (ENSCAFG00020003397) #28	ENSCAFG00020003365	ENSCAFG00020003361	ENSCAFG00020003357	ENSCAFG00020003333 #29	ENSCAFG00020003326 #29	LBR (ENSCAFG00020003321) #30	ENAH (ENSCAFG00020003296) #31	SRP9 (ENSCAFG00020003285) #32	EPHX1 (ENSCAFG00020003279) #33
Red fox	MODERN SPECIES	45								FCRL5 (ENSVVUG00000004067)	ENSVVUG00000004045	FCRL1 (ENSVVUG00000004017)	CD5L (ENSVVUG00000003995)	ENSVVUG00000003980	ENSVVUG00000003937 #18	CAPN2 (ENSVVUG00000003908) #19	TP53BP2 (ENSVVUG00000003902) #20	FBXO28 (ENSVVUG00000003878) #22	DEGS1 (ENSVVUG00000003871) #23	NVL (ENSVVUG00000003759) #24	CNIH4 (ENSVVUG00000003749) #25	WDR26 (ENSVVUG00000002391) #26	ENSVVUG00000002268	ENSVVUG00000002263	ENSVVUG00000002178 #29	ENSVVUG00000002137 #29	LBR (ENSVVUG00000002114) #30	ENSVVUG00000002093 #31	SRP9 (ENSVVUG00000002065) #32	EPHX1 (ENSVVUG00000002017) #33	TMEM63A (ENSVVUG00000001946) #34	PYCR2 (ENSVVUG00000001865) #36	SDE2 (ENSVVUG00000001852)
Caniformia_b	ANCESTRAL SPECIES	8									ENSGT00940000157407 #14	ENSGT00940000162464	ENSGT00940000160410 #15	ENSGT00740000115684 #16	ENSGT00940000160090 #18	ENSGT00940000154784.D.a.b #19	ENSGT00940000153463.b #20	ENSGT00390000002970 #22	ENSGT00940000161841.n	ENSGT00390000013448.a.a #23	ENSGT00570000079239 #24	ENSGT00950000182834.B #25	ENSGT00940000153634.b #26	ENSGT00950000182834.A.a.b.c #28	ENSGT00390000000412	ENSGT00940000160505 #29	ENSGT00390000000417.a.a.b.a.b #30	ENSGT00940000157376 #31	ENSGT00390000018505.b #32	ENSGT00390000002210.d #33	ENSGT00940000159576 #34	ENSGT00950000183044.a.a.a.c #36	ENSGT00390000010056 #35
Ursidae	ANCESTRAL SPECIES	4									ENSGT00940000157407 #14	ENSGT00940000162464	ENSGT00940000160410 #15	ENSGT00740000115684 #16	ENSGT00940000160090 #18	ENSGT00940000154784.D.a.b #19	ENSGT00940000153463.b #20	ENSGT00390000002970 #22	ENSGT00940000161841.n	ENSGT00390000013448.a.a #23	ENSGT00570000079239 #24	ENSGT00950000182834.B #25	ENSGT00940000153634.b #26	ENSGT00950000182834.A.a.b.c #28	ENSGT00390000000412	ENSGT00940000160505 #29	ENSGT00390000000417.a.a.b.a.b #30	ENSGT00940000157376 #31	ENSGT00390000018505.b #32	ENSGT00390000002210.d #33	ENSGT00940000159576 #34	ENSGT00950000183044.a.a.a.c #36	ENSGT00390000010056 #35
Ursus	ANCESTRAL SPECIES	90									ENSGT00940000157407.m #14	ENSGT00940000162464	ENSGT00940000160410 #15	ENSGT00740000115684 #16	ENSGT00940000160090 #18	ENSGT00940000154784.D.a.b #19	ENSGT00940000153463.b #20	ENSGT00390000002970 #22	ENSGT00940000161841.n	ENSGT00390000013448.a.a #23	ENSGT00570000079239 #24	ENSGT00950000182834.B #25	ENSGT00940000153634.b #26	ENSGT00950000182834.A.a.b.c #28	ENSGT00390000000412	ENSGT00940000160505.u #29	ENSGT00390000000417.a.a.b.a.b #30	ENSGT00940000157376 #31	ENSGT00390000018505.b #32	ENSGT00390000002210.d #33	ENSGT00940000159576 #34	ENSGT00950000183044.a.a.a.c #36	ENSGT00390000010056 #35
Polar bear	MODERN SPECIES	99	ENSUMAG00000016593	CD247 (ENSUMAG00000016591)	ENSUMAG00000016589	ENSUMAG00000016586	STYXL2 (ENSUMAG00000016578)	GPA33 (ENSUMAG00000016556)	MAEL (ENSUMAG00000016528)	ILDR2 (ENSUMAG00000016491)	DISP1 (ENSUMAG00000016472) #14	TLR5 (ENSUMAG00000016454)	SUSD4 (ENSUMAG00000016446) #15	ENSUMAG00000016444	ENSUMAG00000016422 #18	CAPN2 (ENSUMAG00000016324) #19	TP53BP2 (ENSUMAG00000016218) #20	ENSUMAG00000016207 #22	ENSUMAG00000016205	DEGS1 (ENSUMAG00000016200) #23	NVL (ENSUMAG00000016175) #24	CNIH4 (ENSUMAG00000016149) #25	WDR26 (ENSUMAG00000016061) #26	CNIH3 (ENSUMAG00000016035) #28	ENSUMAG00000016027	ENSUMAG00000015993 #29	ENSUMAG00000015973 #29	LBR (ENSUMAG00000015941) #30	ENSUMAG00000015934 #31	ENSUMAG00000015926 #31	SRP9 (ENSUMAG00000015908) #32	EPHX1 (ENSUMAG00000015847) #33	TMEM63A (ENSUMAG00000015417) #34
American black bear	MODERN SPECIES	1286																FBXO28 (ENSUAMG00000024356) #22	ENSUAMG00000024357	DEGS1 (ENSUAMG00000024358) #23	NVL (ENSUAMG00000024359) #24	CNIH4 (ENSUAMG00000024365) #25	WDR26 (ENSUAMG00000024368) #26
Giant Panda	MODERN SPECIES	18	ZNF143 (ENSAMEG00000003872)	WEE1 (ENSAMEG00000003841)	SWAP70 (ENSAMEG00000003798)	SBF2 (ENSAMEG00000003625)	ADM (ENSAMEG00000023907)	AMPD3 (ENSAMEG00000003529)	RNF141 (ENSAMEG00000003507)	ENSAMEG00000001923	ENSAMEG00000015474 #14	ENSAMEG00000020191	SUSD4 (ENSAMEG00000015481) #15	CCDC185 (ENSAMEG00000015470) #16	ENSAMEG00000028988 #18	CAPN2 (ENSAMEG00000015559) #19	TP53BP2 (ENSAMEG00000015840) #20	FBXO28 (ENSAMEG00000015894) #22	ENSAMEG00000029292	DEGS1 (ENSAMEG00000015906) #23	NVL (ENSAMEG00000015910) #24	CNIH4 (ENSAMEG00000015944) #25	WDR26 (ENSAMEG00000015955) #26	CNIH3 (ENSAMEG00000024773) #28	DNAH14 (ENSAMEG00000015805) #29	LBR (ENSAMEG00000015778) #30	ENAH (ENSAMEG00000015746) #31	SRP9 (ENSAMEG00000014710) #32	EPHX1 (ENSAMEG00000027522) #33	TMEM63A (ENSAMEG00000014638) #34	PYCR2 (ENSAMEG00000014626) #36	ENSAMEG00000014607 #35	SDE2 (ENSAMEG00000014591)
Mustelinae	ANCESTRAL SPECIES	51									ENSGT00940000157407 #14	ENSGT00940000162464	ENSGT00940000160410.c #15	ENSGT00740000115684 #16	ENSGT00940000160090 #18	ENSGT00940000154784.D.a.b #19	ENSGT00940000153463.b #20	ENSGT00390000002970 #22	ENSGT00940000161841.n	ENSGT00390000013448.a.a #23	ENSGT00570000079239 #24	ENSGT00950000182834.B #25	ENSGT00940000153634.b #26	ENSGT00950000182834.A.a.b.c #28	ENSGT00940000160505 #29	ENSGT00390000000417.a.a.b.a.b #30	ENSGT00940000157376 #31	ENSGT00390000018505.b #32	ENSGT00390000002210.d #33	ENSGT00940000159576 #34	ENSGT00950000183044.a.a.a.c #36	ENSGT00390000010056 #35	ENSGT00530000063402.b
Ferret	MODERN SPECIES	246												ENSMPUG00000003953 #18	CAPN2 (ENSMPUG00000003968) #19	TP53BP2 (ENSMPUG00000003981) #20	ENSMPUG00000003995	FBXO28 (ENSMPUG00000004002) #22	DEGS1 (ENSMPUG00000004010) #23	NVL (ENSMPUG00000004031) #24	WDR26 (ENSMPUG00000004049) #26	CNIH3 (ENSMPUG00000004163) #28	ENSMPUG00000004174 #29	LBR (ENSMPUG00000004384) #30	ENAH (ENSMPUG00000004394) #31	EPHX1 (ENSMPUG00000004409) #33	ENSMPUG00000004459	TMEM63A (ENSMPUG00000004462) #34	PYCR2 (ENSMPUG00000004479) #36	ENSMPUG00000004487 #35	ENSMPUG00000004540	SDE2 (ENSMPUG00000004543)	ENSMPUG00000004555
American mink	MODERN SPECIES	73	UTP25 (ENSNVIG00000016567)	SYT14 (ENSNVIG00000016515)	SRTD4 (ENSNVIG00000016510)	HHAT (ENSNVIG00000016344)	ENSNVIG00000016318	KCNH1 (ENSNVIG00000016211)	RCOR3 (ENSNVIG00000016127)	ENSNVIG00000016119	DISP1 (ENSNVIG00000016087) #14	TLR5 (ENSNVIG00000016072)	SUSD4 (ENSNVIG00000016034) #15	CCDC185 (ENSNVIG00000016029) #16	ENSNVIG00000016004 #18	CAPN2 (ENSNVIG00000015965) #19	TP53BP2 (ENSNVIG00000015939) #20	ENSNVIG00000015922 #22	ENSNVIG00000015907	DEGS1 (ENSNVIG00000015892) #23	NVL (ENSNVIG00000015670) #24	CNIH4 (ENSNVIG00000015648) #25	WDR26 (ENSNVIG00000015630) #26	CNIH3 (ENSNVIG00000015610) #28	DNAH14 (ENSNVIG00000015327) #29	LBR (ENSNVIG00000015260) #30	ENAH (ENSNVIG00000015156) #31	SRP9 (ENSNVIG00000015125) #32	EPHX1 (ENSNVIG00000015107) #33	TMEM63A (ENSNVIG00000015042) #34	ENSNVIG00000015022 #35	PYCR2 (ENSNVIG00000014966) #36	ENSNVIG00000014955 #35
Artiodactyla	ANCESTRAL SPECIES	25	ENSGT00940000157671	ENSGT00940000161139 #8	ENSGT00390000011405 #9	ENSGT00950000182767.b.b.c.b.a ##10	ENSGT00950000182767.a.a #10	ENSGT00390000016465 #11	ENSGT00390000006681 #12	ENSGT00390000016736.b #13	ENSGT00940000157407 #14	ENSGT00940000162464	ENSGT00940000160410 #15	ENSGT00740000115684 #16	ENSGT00940000160090 #18	ENSGT00940000154784.D.a.b #19	ENSGT00940000153463.b #20	ENSGT00390000002970 #22	ENSGT00390000013448.a.a #23	ENSGT00570000079239 #24	ENSGT00950000182834.B #25	ENSGT00940000153634.b #26	ENSGT00950000182834.A.a.b.c #28	ENSGT00390000000412	ENSGT00940000160505 #29	ENSGT00390000000417.a.a.b.a.b #30	ENSGT00940000157376 #31	ENSGT00390000018505.b #32	ENSGT00390000002210.d #33	ENSGT00940000159576 #34	ENSGT00950000183044.a.a.a.c #36	ENSGT00390000010056 #35	ENSGT00530000063402.b
Artiodactyla_a	ANCESTRAL SPECIES	26	ENSGT00940000157671	ENSGT00940000161139 #8	ENSGT00390000011405 #9	ENSGT00950000182767.b.b.c.b.a ##10	ENSGT00950000182767.a.a #10	ENSGT00390000016465 #11	ENSGT00390000006681 #12	ENSGT00390000016736.b #13	ENSGT00940000157407 #14	ENSGT00940000162464	ENSGT00940000160410 #15	ENSGT00740000115684 #16	ENSGT00940000160090 #18	ENSGT00940000154784.D.a.b #19	ENSGT00940000153463.b #20	ENSGT00390000002970 #22	ENSGT00390000013448.a.a #23	ENSGT00570000079239 #24	ENSGT00950000182834.B #25	ENSGT00940000153634.b #26	ENSGT00950000182834.A.a.b.c #28	ENSGT00390000000412	ENSGT00940000160505 #29	ENSGT00390000000417.a.a.b.a.b #30	ENSGT00940000157376 #31	ENSGT00390000018505.b #32	ENSGT00390000002210.d #33	ENSGT00940000159576 #34	ENSGT00950000183044.a.a.a.c #36	ENSGT00390000010056 #35	ENSGT00530000063402.b
Camelidae	ANCESTRAL SPECIES	42	ENSGT00940000162410	ENSGT00950000183093.C	ENSGT00940000157671	ENSGT00940000161139 #8	ENSGT00390000011405 #9	ENSGT00950000182767.a.a #10	ENSGT00390000016465 #11	ENSGT00390000006681 #12	ENSGT00940000157407 #14	ENSGT00940000162464	ENSGT00940000160410 #15	ENSGT00740000115684 #16	ENSGT00940000160090 #18	ENSGT00940000154784.D.a.b #19	ENSGT00940000153463.b #20	ENSGT00390000002970 #22	ENSGT00390000013448.a.a #23	ENSGT00570000079239 #24	ENSGT00950000182834.B #25	ENSGT00940000153634.b #26	ENSGT00950000182834.A.a.b.c #28	ENSGT00390000000412	ENSGT00940000160505 #29	ENSGT00390000000417.a.a.b.a.b #30	ENSGT00940000157376 #31	ENSGT00390000018505.b #32	ENSGT00390000002210.d #33	ENSGT00940000159576 #34	ENSGT00950000183044.a.a.a.c #36	ENSGT00390000010056 #35	ENSGT00530000063402.b
Arabian camel	MODERN SPECIES	15	MTARC1 (ENSCDRG00005018245)	HLX (ENSCDRG00005018290)	DUSP10 (ENSCDRG00005018323)	HHIPL2 (ENSCDRG00005018342) #8	TAF1A (ENSCDRG00005018388) #9	MIA3 (ENSCDRG00005018458) #10	AIDA (ENSCDRG00005018799) #11	BROX (ENSCDRG00005018866) #12	DISP1 (ENSCDRG00005018934) #14	TLR5 (ENSCDRG00005018968)	SUSD4 (ENSCDRG00005018999) #15	CCDC185 (ENSCDRG00005019083) #16	CAPN8 (ENSCDRG00005019102) #18	CAPN2 (ENSCDRG00005019228) #19	TP53BP2 (ENSCDRG00005019295) #20	FBXO28 (ENSCDRG00005019370) #22	DEGS1 (ENSCDRG00005019393) #23	NVL (ENSCDRG00005019414) #24	CNIH4 (ENSCDRG00005019545) #25	WDR26 (ENSCDRG00005019563) #26	CNIH3 (ENSCDRG00005019575) #28	DNAH14 (ENSCDRG00005019610) #29	LBR (ENSCDRG00005019758) #30	ENAH (ENSCDRG00005019805) #31	ENSCDRG00005019933	SRP9 (ENSCDRG00005019952) #32	EPHX1 (ENSCDRG00005019981) #33	TMEM63A (ENSCDRG00005020005) #34	ENSCDRG00005020045 #35	PYCR2 (ENSCDRG00005020074) #36	ENSCDRG00005003588 #35
Alpaca	MODERN SPECIES	1494														CAPN2 (ENSVPAG00000002026) #19	TP53BP2 (ENSVPAG00000002030) #20	FBXO28 (ENSVPAG00000002033) #22	DEGS1 (ENSVPAG00000002034) #23
Artiodactyla_b	ANCESTRAL SPECIES	26	ENSGT00940000157671	ENSGT00940000161139 #8	ENSGT00390000011405 #9	ENSGT00950000182767.b.b.c.b.a ##10	ENSGT00950000182767.a.a #10	ENSGT00390000016465 #11	ENSGT00390000006681 #12	ENSGT00390000016736.b #13	ENSGT00940000157407 #14	ENSGT00940000162464	ENSGT00940000160410 #15	ENSGT00740000115684 #16	ENSGT00940000160090 #18	ENSGT00940000154784.D.a.b #19	ENSGT00940000153463.b #20	ENSGT00390000002970 #22	ENSGT00390000013448.a.a #23	ENSGT00570000079239 #24	ENSGT00950000182834.B #25	ENSGT00940000153634.b #26	ENSGT00950000182834.A.a.b.c #28	ENSGT00390000000412	ENSGT00940000160505 #29	ENSGT00390000000417.a.a.b.a.b #30	ENSGT00940000157376 #31	ENSGT00390000018505.b #32	ENSGT00390000002210.d #33	ENSGT00940000159576 #34	ENSGT00950000183044.a.a.a.c #36	ENSGT00390000010056 #35	ENSGT00530000063402.b
Pecora	ANCESTRAL SPECIES	22	ENSGT00940000157671	ENSGT00940000161139 #8	ENSGT00390000011405 #9	ENSGT00950000182767.b.b.c.b.a ##10	ENSGT00950000182767.a.a #10	ENSGT00390000016465 #11	ENSGT00390000006681 #12	ENSGT00390000016736.b #13	ENSGT00940000157407 #14	ENSGT00940000162464	ENSGT00940000160410 #15	ENSGT00740000115684 #16	ENSGT00940000160090 #18	ENSGT00940000154784.D.a.b #19	ENSGT00940000153463.b #20	ENSGT00390000002970 #22	ENSGT00390000013448.a.a #23	ENSGT00570000079239 #24	ENSGT00950000182834.B #25	ENSGT00940000153634.b #26	ENSGT00950000182834.A.a.b.c #28	ENSGT00390000000412	ENSGT00940000160505 #29	ENSGT00390000000417.a.a.b.a.b #30	ENSGT00940000157376 #31	ENSGT00390000018505.b #32	ENSGT00390000002210.d #33	ENSGT00940000159576 #34	ENSGT00950000183044.a.a.a.c #36	ENSGT00390000010056 #35	ENSGT00530000063402.b
Yarkand deer	MODERN SPECIES	5	HLX (ENSCHYG00000005141)	DUSP10 (ENSCHYG00000005172)	HHIPL2 (ENSCHYG00000005202) #8	TAF1A (ENSCHYG00000005259) #9	MIA3 (ENSCHYG00000005495) #10	ENSCHYG00000006135 #11	BROX (ENSCHYG00000006300) #12	FAM177B (ENSCHYG00000006384) #13	DISP1 (ENSCHYG00000006409) #14	TLR5 (ENSCHYG00000006458)	SUSD4 (ENSCHYG00000006489) #15	CCDC185 (ENSCHYG00000006553) #16	CAPN8 (ENSCHYG00000006581) #18	CAPN2 (ENSCHYG00000006746) #19	TP53BP2 (ENSCHYG00000006921) #20	FBXO28 (ENSCHYG00000007189) #22	DEGS1 (ENSCHYG00000007227) #23	ENSCHYG00000007273 #24	CNIH4 (ENSCHYG00000007424) #25	WDR26 (ENSCHYG00000007505) #26	ENSCHYG00000007572	CNIH3 (ENSCHYG00000007606) #28	ENSCHYG00000007678	ENSCHYG00000007691	DNAH14 (ENSCHYG00000007743) #29	LBR (ENSCHYG00000008100) #30	ENAH (ENSCHYG00000008178) #31	EPHX1 (ENSCHYG00000008370) #33	TMEM63A (ENSCHYG00000008498) #34	ENSCHYG00000008576 #35	PYCR2 (ENSCHYG00000008616) #36
Percora_a	ANCESTRAL SPECIES	15	ENSGT00940000157671	ENSGT00940000161139 #8	ENSGT00390000011405 #9	ENSGT00950000182767.b.b.c.b.a ##10	ENSGT00950000182767.a.a #10	ENSGT00390000016465 #11	ENSGT00390000006681 #12	ENSGT00390000016736.b #13	ENSGT00940000157407 #14	ENSGT00940000162464	ENSGT00940000160410 #15	ENSGT00740000115684 #16	ENSGT00940000160090 #18	ENSGT00940000154784.D.a.b #19	ENSGT00940000153463.b #20	ENSGT00390000002970 #22	ENSGT00390000013448.a.a #23	ENSGT00570000079239 #24	ENSGT00950000182834.B #25	ENSGT00940000153634.b #26	ENSGT00950000182834.A.a.b.c #28	ENSGT00390000000412	ENSGT00940000160505 #29	ENSGT00390000000417.a.a.b.a.b #30	ENSGT00940000157376 #31	ENSGT00390000018505.b #32	ENSGT00390000002210.d #33	ENSGT00940000159576 #34	ENSGT00950000183044.a.a.a.c #36	ENSGT00390000010056 #35	ENSGT00530000063402.b
Bovidae	ANCESTRAL SPECIES	15	ENSGT00940000157671	ENSGT00940000161139 #8	ENSGT00390000011405 #9	ENSGT00950000182767.b.b.c.b.a ##10	ENSGT00950000182767.a.a #10	ENSGT00390000016465 #11	ENSGT00390000006681 #12	ENSGT00390000016736.b #13	ENSGT00940000157407 #14	ENSGT00940000162464	ENSGT00940000160410 #15	ENSGT00740000115684 #16	ENSGT00940000160090 #18	ENSGT00940000154784.D.a.b #19	ENSGT00940000153463.b #20	ENSGT00390000002970 #22	ENSGT00390000013448.a.a #23	ENSGT00570000079239 #24	ENSGT00950000182834.B #25	ENSGT00940000153634.b #26	ENSGT00950000182834.A.a.b.c #28	ENSGT00390000000412	ENSGT00940000160505 #29	ENSGT00390000000417.a.a.b.a.b #30	ENSGT00940000157376 #31	ENSGT00390000018505.b #32	ENSGT00390000002210.d #33	ENSGT00940000159576 #34	ENSGT00390000010056.tb #35	ENSGT00950000183044.a.a.a.c #36	ENSGT00390000010056.ub #35
Bovinae	ANCESTRAL SPECIES	12	ENSGT00940000161139 #8	ENSGT00390000011405 #9	ENSGT00950000182767.b.b.c.b.a ##10	ENSGT00950000182767.a.a #10	ENSGT00390000016465 #11	ENSGT00390000006681 #12	ENSGT00390000016736.b #13	ENSGT00940000157484.q.b	ENSGT00940000157407 #14	ENSGT00940000162464	ENSGT00940000160410 #15	ENSGT00740000115684 #16	ENSGT00940000160090 #18	ENSGT00940000154784.D.a.b #19	ENSGT00940000153463.b #20	ENSGT00390000002970 #22	ENSGT00390000013448.a.a #23	ENSGT00570000079239 #24	ENSGT00950000182834.B #25	ENSGT00940000153634.b #26	ENSGT00950000182834.A.a.b.c #28	ENSGT00390000000412	ENSGT00940000160505 #29	ENSGT00390000000417.a.a.b.a.b #30	ENSGT00940000157376 #31	ENSGT00390000018505.b #32	ENSGT00390000002210.d #33	ENSGT00940000159576 #34	ENSGT00390000010056.tb #35	ENSGT00950000183044.a.a.a.c #36	ENSGT00390000010056.ub #35
Bos	ANCESTRAL SPECIES	12	ENSGT00940000157671	ENSGT00940000161139 #8	ENSGT00390000011405 #9	ENSGT00950000182767.a.a #10	ENSGT00390000016465 #11	ENSGT00390000006681 #12	ENSGT00390000016736.b #13	ENSGT00940000157484.q.b	ENSGT00940000157407 #14	ENSGT00940000162464	ENSGT00940000160410 #15	ENSGT00740000115684 #16	ENSGT00940000160090 #18	ENSGT00940000154784.D.a.b #19	ENSGT00940000153463.b #20	ENSGT00390000002970 #22	ENSGT00390000013448.a.a #23	ENSGT00570000079239 #24	ENSGT00950000182834.B #25	ENSGT00940000153634.b #26	ENSGT00950000182834.A.a.b.c #28	ENSGT00390000000412	ENSGT00940000160505 #29	ENSGT00390000000417.a.a.b.a.b #30	ENSGT00940000157376 #31	ENSGT00390000018505.b #32	ENSGT00390000002210.d #33	ENSGT00940000159576 #34	ENSGT00390000010056.tb #35	ENSGT00950000183044.a.a.a.c #36	ENSGT00390000010056.ub #35
Bos_b	ANCESTRAL SPECIES	9	ENSGT00940000157671	ENSGT00940000161139 #8	ENSGT00390000011405 #9	ENSGT00950000182767.a.a #10	ENSGT00390000016465 #11	ENSGT00390000006681 #12	ENSGT00390000016736.b #13	ENSGT00940000157484.q.b	ENSGT00940000157407 #14	ENSGT00940000162464	ENSGT00940000160410 #15	ENSGT00740000115684 #16	ENSGT00940000160090 #18	ENSGT00940000154784.D.a.b #19	ENSGT00940000153463.b #20	ENSGT00390000002970 #22	ENSGT00390000013448.a.a #23	ENSGT00570000079239 #24	ENSGT00950000182834.B #25	ENSGT00940000153634.b #26	ENSGT00950000182834.A.a.b.c #28	ENSGT00940000160505 #29	ENSGT00390000000417.a.a.b.a.b #30	ENSGT00940000157376 #31	ENSGT00390000018505.b #32	ENSGT00390000002210.d #33	ENSGT00940000159576 #34	ENSGT00390000010056.tb #35	ENSGT00950000183044.a.a.a.c #36	ENSGT00390000010056.ub #35	ENSGT00530000063402.b
Hybrid Bos Indicus	MODERN SPECIES	7	DUSP10 (ENSBIXG00005031063)	HHIPL2 (ENSBIXG00005031090) #8	TAF1A (ENSBIXG00005031101) #9	MIA3 (ENSBIXG00005031113) #10	AIDA (ENSBIXG00005031139) #11	BROX (ENSBIXG00005029226) #12	FAM177B (ENSBIXG00005029172) #13	DISP1 (ENSBIXG00005001796) #14	ENSBIXG00005005182	TLR5 (ENSBIXG00005005173)	SUSD4 (ENSBIXG00005005153) #15	CCDC185 (ENSBIXG00005001963) #16	CAPN8 (ENSBIXG00005005137) #18	CAPN2 (ENSBIXG00005029036) #19	TP53BP2 (ENSBIXG00005002081) #20	FBXO28 (ENSBIXG00005028929) #22	NVL (ENSBIXG00005028887) #24	DEGS1 (ENSBIXG00005028737) #23	CNIH4 (ENSBIXG00005002358) #25	WDR26 (ENSBIXG00005002380) #26	CNIH3 (ENSBIXG00005028617) #28	DNAH14 (ENSBIXG00005004917) #29	LBR (ENSBIXG00005028146) #30	ENAH (ENSBIXG00005028092) #31	SRP9 (ENSBIXG00005027974) #32	EPHX1 (ENSBIXG00005027913) #33	TMEM63A (ENSBIXG00005027791) #34	ENSBIXG00005004759 #35	PYCR2 (ENSBIXG00005004750) #36	ENSBIXG00005027638 #35	SDE2 (ENSBIXG00005027604)
Cow	MODERN SPECIES	7	DUSP10 (ENSBTAG00000001729)	HHIPL2 (ENSBTAG00000017561) #8	TAF1A (ENSBTAG00000013483) #9	MIA3 (ENSBTAG00000018824) #10	AIDA (ENSBTAG00000007593) #11	BROX (ENSBTAG00000007595) #12	FAM177B (ENSBTAG00000049754) #13	DISP1 (ENSBTAG00000049277) #14	ENSBTAG00000049777	TLR5 (ENSBTAG00000000477)	SUSD4 (ENSBTAG00000020989) #15	CCDC185 (ENSBTAG00000006704) #16	CAPN8 (ENSBTAG00000003600) #18	CAPN2 (ENSBTAG00000012778) #19	TP53BP2 (ENSBTAG00000012781) #20	FBXO28 (ENSBTAG00000019538) #22	DEGS1 (ENSBTAG00000012705) #23	NVL (ENSBTAG00000006718) #24	CNIH4 (ENSBTAG00000019471) #25	WDR26 (ENSBTAG00000011785) #26	CNIH3 (ENSBTAG00000053199) #28	DNAH14 (ENSBTAG00000008449) #29	LBR (ENSBTAG00000008453) #30	ENAH (ENSBTAG00000016185) #31	SRP9 (ENSBTAG00000033322) #32	EPHX1 (ENSBTAG00000000140) #33	TMEM63A (ENSBTAG00000002854) #34	LEFTY2 (ENSBTAG00000055022) #35	PYCR2 (ENSBTAG00000005835) #36	ENSBTAG00000054752 #35	SDE2 (ENSBTAG00000012787)
Bos_a	ANCESTRAL SPECIES	8	ENSGT00940000157671	ENSGT00940000161139 #8	ENSGT00390000011405 #9	ENSGT00950000182767.a.a #10	ENSGT00390000016465 #11	ENSGT00390000006681 #12	ENSGT00390000016736.b #13	ENSGT00940000157484.r	ENSGT00940000157407 #14	ENSGT00940000162464	ENSGT00940000160410 #15	ENSGT00740000115684 #16	ENSGT00940000160090 #18	ENSGT00940000154784.D.a.b #19	ENSGT00940000153463.b #20	ENSGT00390000002970 #22	ENSGT00390000013448.a.a #23	ENSGT00570000079239 #24	ENSGT00950000182834.B #25	ENSGT00940000153634.b #26	ENSGT00950000182834.A.a.b.c #28	ENSGT00390000000412	ENSGT00940000160505 #29	ENSGT00390000000417.a.a.b.a.b #30	ENSGT00940000157376 #31	ENSGT00390000018505.b #32	ENSGT00390000002210.d #33	ENSGT00940000159576 #34	ENSGT00390000010056.tb #35	ENSGT00950000183044.a.a.a.c #36	ENSGT00390000010056.ub #35
Domestic yak	MODERN SPECIES	5	HHIPL2 (ENSBGRG00000007565) #8	TAF1A (ENSBGRG00000007778) #9	ENSBGRG00000007998 #10	ENSBGRG00000008040 #10	AIDA (ENSBGRG00000008279) #11	BROX (ENSBGRG00000008569) #12	FAM177B (ENSBGRG00000008711) #13	DISP1 (ENSBGRG00000008755) #14	ENSBGRG00000008899	TLR5 (ENSBGRG00000008930)	SUSD4 (ENSBGRG00000008946) #15	CCDC185 (ENSBGRG00000009005) #16	CAPN8 (ENSBGRG00000009046) #18	CAPN2 (ENSBGRG00000009362) #19	TP53BP2 (ENSBGRG00000009682) #20	FBXO28 (ENSBGRG00000009777) #22	DEGS1 (ENSBGRG00000009888) #23	NVL (ENSBGRG00000010007) #24	CNIH4 (ENSBGRG00000010701) #25	WDR26 (ENSBGRG00000011013) #26	CNIH3 (ENSBGRG00000011424) #28	ENSBGRG00000003672	ENSBGRG00000003740 #29	ENSBGRG00000003785 #29	LBR (ENSBGRG00000003827) #30	ENAH (ENSBGRG00000003960) #31	SRP9 (ENSBGRG00000004171) #32	EPHX1 (ENSBGRG00000004302) #33	TMEM63A (ENSBGRG00000004465) #34	ENSBGRG00000004607 #35	PYCR2 (ENSBGRG00000004674) #36
Wild yak	MODERN SPECIES	1552		HHIPL2 (ENSBMUG00000007240) #8	TAF1A (ENSBMUG00000007226) #9	MIA3 (ENSBMUG00000007183) #10	AIDA (ENSBMUG00000007098) #11	BROX (ENSBMUG00000007054) #12	FAM177B (ENSBMUG00000007019) #13	ENSBMUG00000007013	DISP1 (ENSBMUG00000007002) #14	TLR5 (ENSBMUG00000006974)	SUSD4 (ENSBMUG00000006950) #15	CCDC185 (ENSBMUG00000006941) #16	CAPN8 (ENSBMUG00000006928) #18	CAPN2 (ENSBMUG00000006868) #19	TP53BP2 (ENSBMUG00000006820) #20	ENSBMUG00000006795 #22	DEGS1 (ENSBMUG00000006787) #23	NVL (ENSBMUG00000006678) #24	CNIH4 (ENSBMUG00000006608) #25	WDR26 (ENSBMUG00000006567) #26	CNIH3 (ENSBMUG00000006554) #28	DNAH14 (ENSBMUG00000006523) #29	LBR (ENSBMUG00000006450) #30	ENAH (ENSBMUG00000006434) #31	SRP9 (ENSBMUG00000006383) #32	EPHX1 (ENSBMUG00000006359) #33	TMEM63A (ENSBMUG00000006305) #34	ENSBMUG00000006287 #35
American bison	MODERN SPECIES	3231	HHIPL2 (ENSBBBG00000002608) #8	TAF1A (ENSBBBG00000013043) #9	ENSBBBG00000013023 ##10	ENSBBBG00000013014 #10	AIDA (ENSBBBG00000002579) #11	BROX (ENSBBBG00000012936) #12	FAM177B (ENSBBBG00000002537) #13	ENSBBBG00000012870	DISP1 (ENSBBBG00000002533) #14	TLR5 (ENSBBBG00000012858)	SUSD4 (ENSBBBG00000012855) #15	ENSBBBG00000001751 #16	CAPN8 (ENSBBBG00000002515) #18	CAPN2 (ENSBBBG00000007450) #19	TP53BP2 (ENSBBBG00000001782) #20	FBXO28 (ENSBBBG00000012804) #22	DEGS1 (ENSBBBG00000012791) #23	NVL (ENSBBBG00000002471) #24	CNIH4 (ENSBBBG00000012671) #25	WDR26 (ENSBBBG00000012642) #26	ENSBBBG00000012622	CNIH3 (ENSBBBG00000002423) #28	DNAH14 (ENSBBBG00000007448) #29	LBR (ENSBBBG00000012450) #30	ENAH (ENSBBBG00000002368) #31	SRP9 (ENSBBBG00000002346) #32	EPHX1 (ENSBBBG00000002344) #33	TMEM63A (ENSBBBG00000012352) #34	ENSBBBG00000012339 #35	PYCR2 (ENSBBBG00000012333) #36	ENSBBBG00000012320 #35
Caprinae	ANCESTRAL SPECIES	12	ENSGT00950000183093.C	ENSGT00940000157671	ENSGT00940000161139 #8	ENSGT00390000011405 #9	ENSGT00950000182767.a.a #10	ENSGT00390000016465 #11	ENSGT00390000006681 #12	ENSGT00390000016736.b #13	ENSGT00940000157407 #14	ENSGT00940000162464	ENSGT00940000160410 #15	ENSGT00740000115684 #16	ENSGT00940000160090 #18	ENSGT00940000154784.D.a.b #19	ENSGT00940000153463.b #20	ENSGT00390000002970 #22	ENSGT00390000013448.a.a #23	ENSGT00570000079239 #24	ENSGT00950000182834.B #25	ENSGT00940000153634.b #26	ENSGT00950000182834.A.a.b.c #28	ENSGT00940000160505 #29	ENSGT00390000000417.a.a.b.a.b #30	ENSGT00390000018505.b #32	ENSGT00390000002210.d #33	ENSGT00940000159576 #34	ENSGT00390000010056.tb #35	ENSGT00950000183044.a.a.a.c #36	ENSGT00390000010056.ub #35	ENSGT00530000063402.b	ENSGT01100000263504.a.b.b.a.b
Goat	DUPLICATION
Goat	MODERN SPECIES	7	ENSCHIG00000011464	HHIPL2 (ENSCHIG00000014988) #8	TAF1A (ENSCHIG00000020462) #9	ENSCHIG00000011137	MIA3 (ENSCHIG00000020148) #10	AIDA (ENSCHIG00000007226) #11	BROX (ENSCHIG00000016719) #12	FAM177B (ENSCHIG00000024320) #13	DISP1 (ENSCHIG00000016498) #14	TLR5 (ENSCHIG00000006703)	SUSD4 (ENSCHIG00000013995) #15	CCDC185 (ENSCHIG00000010076) #16	CAPN8 (ENSCHIG00000012089) #18	CAPN2 (ENSCHIG00000018229) #19	TP53BP2 (ENSCHIG00000025253) #20	ENSCHIG00000014707 #22	DEGS1 (ENSCHIG00000021163) #23	NVL (ENSCHIG00000001224) #24	CNIH4 (ENSCHIG00000014392) #25	WDR26 (ENSCHIG00000020527) #26	ENSCHIG00000008380	CNIH3 (ENSCHIG00000015311) #28	DNAH14 (ENSCHIG00000021801) #29	LBR (ENSCHIG00000013607) #30	ENAH (ENSCHIG00000022407) #31	ENSCHIG00000000542	ENSCHIG00000004057	SRP9 (ENSCHIG00000006407) #32	EPHX1 (ENSCHIG00000017919) #33	TMEM63A (ENSCHIG00000026549) #34	ENSCHIG00000017375 #35
Goat	MODERN SPECIES	5	ENSCHIG00000008889	INTS8 (ENSCHIG00000014183)	CCNE2 (ENSCHIG00000022720)	TP53INP1 (ENSCHIG00000009037)	ENSCHIG00000014016	PLEKHF2 (ENSCHIG00000009121)	CFAP418 (ENSCHIG00000025987)	GDF6 (ENSCHIG00000019581)	ENSCHIG00000013644	MTERF3 (ENSCHIG00000009830)	PTDSS1 (ENSCHIG00000015566)	SDC2 (ENSCHIG00000015573)	CPQ (ENSCHIG00000013387)	TSPYL5 (ENSCHIG00000008475)	ENSCHIG00000008528	ENSCHIG00000019776 #22	ENSCHIG00000019993	ENSCHIG00000012579	MTDH (ENSCHIG00000020299)	ENSCHIG00000007841	MATN2 (ENSCHIG00000022338)	RPL30 (ENSCHIG00000016945)	ENSCHIG00000021324	RIDA (ENSCHIG00000012463)	POP1 (ENSCHIG00000017066)	NIPAL2 (ENSCHIG00000015486)	ENSCHIG00000004977	KCNS2 (ENSCHIG00000004644)	STK3 (ENSCHIG00000010771)	OSR2 (ENSCHIG00000019458)	ENSCHIG00000006748
Rambouillet Sheep	MODERN SPECIES	3	HHIPL2 (ENSOARG00020010971) #8	ENSOARG00020011368 #9	ENSOARG00020011824	ENSOARG00020011871	ENSOARG00020011914 #9	ENSOARG00020012303 #10	AIDA (ENSOARG00020012541) #11	BROX (ENSOARG00020012719) #12	FAM177B (ENSOARG00020012974) #13	DISP1 (ENSOARG00020013049) #14	SUSD4 (ENSOARG00020013313) #15	CCDC185 (ENSOARG00020013362) #16	CAPN8 (ENSOARG00020013400) #18	CAPN2 (ENSOARG00020013965) #19	TP53BP2 (ENSOARG00020014713) #20	FBXO28 (ENSOARG00020015136) #22	DEGS1 (ENSOARG00020015261) #23	NVL (ENSOARG00020015361) #24	CNIH4 (ENSOARG00020015970) #25	WDR26 (ENSOARG00020016098) #26	ENSOARG00020016393	CNIH3 (ENSOARG00020016440) #28	DNAH14 (ENSOARG00020016617) #29	ENSOARG00020017311	LBR (ENSOARG00020017338) #30	ENAH (ENSOARG00020017437) #31	ENSOARG00020018058 #31	ENSOARG00020018102	SRP9 (ENSOARG00020018121) #32	EPHX1 (ENSOARG00020018225) #33	TMEM63A (ENSOARG00020018308) #34
Siberian musk deer	MODERN SPECIES	188	DUSP10 (ENSMMSG00000021551)	HHIPL2 (ENSMMSG00000021513) #8	ENSMMSG00000021461 #9	MIA3 (ENSMMSG00000021253) #10	AIDA (ENSMMSG00000021184) #11	BROX (ENSMMSG00000021137) #12	FAM177B (ENSMMSG00000021094) #13	DISP1 (ENSMMSG00000021065) #14	TLR5 (ENSMMSG00000021040)	SUSD4 (ENSMMSG00000021018) #15	CCDC185 (ENSMMSG00000021007) #16	CAPN8 (ENSMMSG00000020861) #18	CAPN2 (ENSMMSG00000020716) #19	TP53BP2 (ENSMMSG00000020632) #20	ENSMMSG00000020616	FBXO28 (ENSMMSG00000020579) #22	DEGS1 (ENSMMSG00000020549) #23	ENSMMSG00000020522	NVL (ENSMMSG00000020360) #24	ENSMMSG00000020244 #25	WDR26 (ENSMMSG00000020076) #26	CNIH3 (ENSMMSG00000020039) #28	DNAH14 (ENSMMSG00000019767) #29	LBR (ENSMMSG00000019704) #30	ENAH (ENSMMSG00000019676) #31	SRP9 (ENSMMSG00000019636) #32	EPHX1 (ENSMMSG00000019599) #33	TMEM63A (ENSMMSG00000019545) #34	ENSMMSG00000019519 #35	PYCR2 (ENSMMSG00000019466) #36	ENSMMSG00000019436 #35
Cetacea	ANCESTRAL SPECIES	23	ENSGT00940000157671	ENSGT00940000161139 #8	ENSGT00390000011405 #9	ENSGT00950000182767.a.a #10	ENSGT00390000016465 #11	ENSGT00390000006681 #12	ENSGT00390000016736.b #13	ENSGT00940000157407 #14	ENSGT00940000162464	ENSGT00940000160410 #15	ENSGT00740000115684 #16	ENSGT01010000228748	ENSGT00940000160090 #18	ENSGT00940000154784.D.a.b #19	ENSGT00940000153463.b #20	ENSGT00390000002970 #22	ENSGT00390000013448.a.a #23	ENSGT00570000079239 #24	ENSGT00950000182834.B #25	ENSGT00940000153634.b #26	ENSGT00950000182834.A.a.b.c #28	ENSGT00940000160505 #29	ENSGT00390000000417.a.a.b.a.b #30	ENSGT00940000157376.tb.a #31	ENSGT00390000018505.b #32	ENSGT00390000002210.d #33	ENSGT00940000159576 #34	ENSGT00950000183044.a.a.a.c #36	ENSGT00390000010056 #35	ENSGT00530000063402.b	ENSGT01100000263504.a.b.a.b.a.b.ib
Blue whale	MODERN SPECIES		DUSP10 (ENSBMSG00010003660)	HHIPL2 (ENSBMSG00010003643) #8	TAF1A (ENSBMSG00010003619) #9	MIA3 (ENSBMSG00010003604) #10	ENSBMSG00010003582 #11	BROX (ENSBMSG00010003525) #12	FAM177B (ENSBMSG00010003511) #13	DISP1 (ENSBMSG00010003492) #14	TLR5 (ENSBMSG00010003485)	SUSD4 (ENSBMSG00010003469) #15	ENSBMSG00010003457 #16	ENSBMSG00010003450	CAPN8 (ENSBMSG00010003404) #18	CAPN2 (ENSBMSG00010003346) #19	TP53BP2 (ENSBMSG00010003281) #20	FBXO28 (ENSBMSG00010003253) #22	ENSBMSG00010003239	DEGS1 (ENSBMSG00010003230) #23	NVL (ENSBMSG00010003127) #24	CNIH4 (ENSBMSG00010003094) #25	WDR26 (ENSBMSG00010003042) #26	CNIH3 (ENSBMSG00010003002) #28	ENSBMSG00010002975	ENSBMSG00010002972	ENSBMSG00010002963 #29	LBR (ENSBMSG00010002944) #30	ENSBMSG00010002887 #31	ENSBMSG00010002862 #32	ENSBMSG00010002850	EPHX1 (ENSBMSG00010002828) #33	TMEM63A (ENSBMSG00010002709) #34
Odontoceti	ANCESTRAL SPECIES	24	ENSGT00950000183093.C	ENSGT00940000157671	ENSGT00390000011405 #9	ENSGT00950000182767.a.a #10	ENSGT00390000016465 #11	ENSGT00390000006681 #12	ENSGT00390000016736.b #13	ENSGT00940000157407 #14	ENSGT00940000162464	ENSGT00940000160410 #15	ENSGT00740000115684 #16	ENSGT01010000228748	ENSGT00940000160090 #18	ENSGT00940000154784.D.a.b #19	ENSGT00940000153463.b #20	ENSGT00390000002970 #22	ENSGT00390000013448.a.a #23	ENSGT00570000079239 #24	ENSGT00950000182834.B #25	ENSGT00940000153634.b #26	ENSGT00950000182834.A.a.b.c #28	ENSGT00390000000417.a.a.b.a.b #30	ENSGT00940000157376.tb.a #31	ENSGT00390000018505.b #32	ENSGT00390000002210.d #33	ENSGT00940000159576 #34	ENSGT00950000183044.a.a.a.c #36	ENSGT00390000010056 #35	ENSGT00530000063402.b	ENSGT01100000263504.a.b.a.b.a.b.ib	ENSGT00530000063651.a
Sperm whale	DUPLICATION
Sperm whale	MODERN SPECIES	15	DUSP10 (ENSPCTG00005003133)	ENSPCTG00005003142	TAF1A (ENSPCTG00005003145) #9	MIA3 (ENSPCTG00005003175) #10	AIDA (ENSPCTG00005003227) #11	BROX (ENSPCTG00005003304) #12	FAM177B (ENSPCTG00005003331) #13	DISP1 (ENSPCTG00005003346) #14	TLR5 (ENSPCTG00005003367)	SUSD4 (ENSPCTG00005003372) #15	ENSPCTG00005003391 #16	ENSPCTG00005003403 #18	ENSPCTG00005000213	CAPN2 (ENSPCTG00005000250) #19	TP53BP2 (ENSPCTG00005000322) #20	FBXO28 (ENSPCTG00005000364) #22	DEGS1 (ENSPCTG00005000386) #23	NVL (ENSPCTG00005000438) #24	ENSPCTG00005000568	CNIH4 (ENSPCTG00005000590) #25	WDR26 (ENSPCTG00005000611) #26	CNIH3 (ENSPCTG00005000645) #28	LBR (ENSPCTG00005000679) #30	ENAH (ENSPCTG00005000731) #31	SRP9 (ENSPCTG00005000768) #32	EPHX1 (ENSPCTG00005000792) #33	TMEM63A (ENSPCTG00005000810) #34	ENSPCTG00005000846 #35	PYCR2 (ENSPCTG00005000862) #36	ENSPCTG00005000889 #35	SDE2 (ENSPCTG00005000908)
Sperm whale	MODERN SPECIES		NPHP3 (ENSPCTG00005000190)	ENSPCTG00005000191	ACAD11 (ENSPCTG00005000192)	ACKR4 (ENSPCTG00005000193)	DNAJC13 (ENSPCTG00005000194)	ENSPCTG00005000196	MRPL3 (ENSPCTG00005000197)	NUDT16 (ENSPCTG00005000198)	NEK11 (ENSPCTG00005000199)	ASTE1 (ENSPCTG00005000201)	ATP2C1 (ENSPCTG00005000766)	PIK3R4 (ENSPCTG00005000977)	COL6A6 (ENSPCTG00005001039)	COL6A5 (ENSPCTG00005001123)	ENSPCTG00005001195	ENSPCTG00005001200 #22	CAPN7 (ENSPCTG00005001222)	SH3BP5 (ENSPCTG00005001266)	METTL6 (ENSPCTG00005001309)	EAF1 (ENSPCTG00005001335)	HACL1 (ENSPCTG00005001391)	BTD (ENSPCTG00005001503)	ANKRD28 (ENSPCTG00005001558)	GALNT15 (ENSPCTG00005001677)	DPH3 (ENSPCTG00005001706)	OXNAD1 (ENSPCTG00005001722)	RFTN1 (ENSPCTG00005001747)	ENSPCTG00005001768	PLCL2 (ENSPCTG00005001792)	TBC1D5 (ENSPCTG00005001824)	ENSPCTG00005001940
Odontoceti_a	ANCESTRAL SPECIES	27	ENSGT00950000183093.C	ENSGT00940000157671	ENSGT00390000011405 #9	ENSGT00950000182767.a.a #10	ENSGT00390000016465 #11	ENSGT00390000006681 #12	ENSGT00390000016736.b #13	ENSGT00940000157407 #14	ENSGT00940000162464	ENSGT00940000160410 #15	ENSGT00740000115684 #16	ENSGT01010000228748	ENSGT00940000160090 #18	ENSGT00940000154784.D.a.b #19	ENSGT00940000153463.b #20	ENSGT00390000002970 #22	ENSGT00390000013448.a.a #23	ENSGT00570000079239 #24	ENSGT00950000182834.B #25	ENSGT00940000153634.b #26	ENSGT00950000182834.A.a.b.c #28	ENSGT00390000000417.a.a.b.a.b #30	ENSGT00940000157376.tb.a #31	ENSGT00390000018505.b #32	ENSGT00390000002210.d #33	ENSGT00940000159576 #34	ENSGT00950000183044.a.a.a.c #36	ENSGT00390000010056 #35	ENSGT00530000063402.b	ENSGT01100000263504.a.b.a.b.a.b.ib	ENSGT00530000063651.a
Dolphin	MODERN SPECIES	776															TP53BP2 (ENSTTRG00000013689) #20	FBXO28 (ENSTTRG00000013708) #22
Odontoceti_b	ANCESTRAL SPECIES		ENSGT00950000183093.C	ENSGT00940000157671	ENSGT00390000011405 #9	ENSGT00950000182767.a.a #10	ENSGT00390000016465 #11	ENSGT00390000006681 #12	ENSGT00390000016736.b #13	ENSGT00940000157407 #14	ENSGT00940000162464	ENSGT00940000160410 #15	ENSGT00740000115684 #16	ENSGT01010000228748	ENSGT00940000160090 #18	ENSGT00940000154784.D.a.b #19	ENSGT00940000153463.b #20	ENSGT00390000002970 #22	ENSGT00390000013448.a.a #23	ENSGT00570000079239 #24	ENSGT00950000182834.B #25	ENSGT00940000153634.b #26	ENSGT00950000182834.A.a.b.c #28	ENSGT00390000000417.a.a.b.a.b #30	ENSGT00940000157376.tb.a #31	ENSGT00390000018505.b #32	ENSGT00390000013102.e.a.c.b	ENSGT00390000002210.d #33	ENSGT00940000159576 #34	ENSGT00390000010056 #35	ENSGT00950000183044.a.a.a.c #36	ENSGT00530000063402.b	ENSGT01100000263504.a.a.yb
Vaquita	MODERN SPECIES		MTARC1 (ENSPSNG00000001138)	HLX (ENSPSNG00000001110)	DUSP10 (ENSPSNG00000001088)	TAF1A (ENSPSNG00000001060) #9	MIA3 (ENSPSNG00000000983) #10	AIDA (ENSPSNG00000000908) #11	BROX (ENSPSNG00000000861) #12	FAM177B (ENSPSNG00000000824) #13	DISP1 (ENSPSNG00000000802) #14	TLR5 (ENSPSNG00000000784)	SUSD4 (ENSPSNG00000000766) #15	ENSPSNG00000000736 #16	ENSPSNG00000000722	CAPN2 (ENSPSNG00000000652) #19	TP53BP2 (ENSPSNG00000000569) #20	FBXO28 (ENSPSNG00000000541) #22	DEGS1 (ENSPSNG00000000518) #23	NVL (ENSPSNG00000000479) #24	CNIH4 (ENSPSNG00000000427) #25	WDR26 (ENSPSNG00000000396) #26	CNIH3 (ENSPSNG00000000369) #28	LBR (ENSPSNG00000000326) #30	ENSPSNG00000000246 #31	ENSPSNG00000000145 #32	ENSPSNG00000000117	EPHX1 (ENSPSNG00000000088) #33	TMEM63A (ENSPSNG00000000052) #34	ENSPSNG00000003871 #35	PYCR2 (ENSPSNG00000003860) #36	ENSPSNG00000003838 #35	SDE2 (ENSPSNG00000003818)
Monodontidae	ANCESTRAL SPECIES		ENSGT00950000183093.C	ENSGT00940000157671	ENSGT00390000011405 #9	ENSGT00950000182767.a.a #10	ENSGT00390000016465 #11	ENSGT00390000006681 #12	ENSGT00390000016736.b #13	ENSGT00940000157407 #14	ENSGT00940000162464	ENSGT00940000160410 #15	ENSGT00740000115684 #16	ENSGT01010000228748	ENSGT00940000160090 #18	ENSGT00940000154784.D.a.b #19	ENSGT00940000153463.b #20	ENSGT00390000002970 #22	ENSGT00390000013448.a.a #23	ENSGT00570000079239 #24	ENSGT00950000182834.B #25	ENSGT00940000153634.b #26	ENSGT00950000182834.A.a.b.c #28	ENSGT00390000000417.a.a.b.a.b #30	ENSGT00940000157376.tb.a #31	ENSGT00390000018505.b #32	ENSGT00390000013102.e.a.c.b	ENSGT00390000002210.d #33	ENSGT00940000159576 #34	ENSGT00390000010056 #35	ENSGT00950000183044.a.a.a.c #36	ENSGT00530000063402.b	ENSGT01100000263504.a.a.yb
Beluga whale	DUPLICATION
Beluga whale	MODERN SPECIES	21	HLX (ENSDLEG00000003468)	DUSP10 (ENSDLEG00000003477)	TAF1A (ENSDLEG00000003498) #9	MIA3 (ENSDLEG00000003514) #10	AIDA (ENSDLEG00000003555) #11	BROX (ENSDLEG00000003569) #12	ENSDLEG00000003597 #13	DISP1 (ENSDLEG00000003604) #14	TLR5 (ENSDLEG00000003614)	SUSD4 (ENSDLEG00000003617) #15	CCDC185 (ENSDLEG00000003642) #16	ENSDLEG00000003659	ENSDLEG00000000184 #18	CAPN2 (ENSDLEG00000000249) #19	TP53BP2 (ENSDLEG00000000370) #20	FBXO28 (ENSDLEG00000000426) #22	DEGS1 (ENSDLEG00000000439) #23	NVL (ENSDLEG00000000461) #24	CNIH4 (ENSDLEG00000000514) #25	WDR26 (ENSDLEG00000000539) #26	CNIH3 (ENSDLEG00000000564) #28	ENSDLEG00000000602	LBR (ENSDLEG00000000619) #30	ENSDLEG00000000835 #31	SRP9 (ENSDLEG00000001626) #32	ENSDLEG00000001631	EPHX1 (ENSDLEG00000001643) #33	TMEM63A (ENSDLEG00000001668) #34	ENSDLEG00000001704 #35	PYCR2 (ENSDLEG00000001719) #36	SDE2 (ENSDLEG00000001732)
Beluga whale	MODERN SPECIES	74	ENSDLEG00000013610	SLC6A17 (ENSDLEG00000013620)	KCNC4 (ENSDLEG00000013678)	RBM15 (ENSDLEG00000013698)	SLC16A4 (ENSDLEG00000013705)	LAMTOR5 (ENSDLEG00000013717)	PROK1 (ENSDLEG00000013725)	ENSDLEG00000013799	KCNA10 (ENSDLEG00000014495)	KCNA2 (ENSDLEG00000014502)	KCNA3 (ENSDLEG00000014503)	ENSDLEG00000014507	ENSDLEG00000014510	CD53 (ENSDLEG00000014517)	ENSDLEG00000014526	ENSDLEG00000014543 #22	LRIF1 (ENSDLEG00000014561)	DRAM2 (ENSDLEG00000014572)	CEPT1 (ENSDLEG00000014634)	DENND2D (ENSDLEG00000014651)	ENSDLEG00000014689	CHIA (ENSDLEG00000014820)	ENSDLEG00000014836	ENSDLEG00000014857	ENSDLEG00000014888	OVGP1 (ENSDLEG00000014907)	ENSDLEG00000014938	ENSDLEG00000014947	ADORA3 (ENSDLEG00000014971)	RAP1A (ENSDLEG00000014980)	FAM212B (ENSDLEG00000015000)
Narwhal	DUPLICATION
Narwhal	MODERN SPECIES	304	HLX (ENSMMNG00015007698)	DUSP10 (ENSMMNG00015007726)	TAF1A (ENSMMNG00015007793) #9	MIA3 (ENSMMNG00015007840) #10	AIDA (ENSMMNG00015007906) #11	BROX (ENSMMNG00015007962) #12	FAM177B (ENSMMNG00015007999) #13	DISP1 (ENSMMNG00015008014) #14	TLR5 (ENSMMNG00015008037)	SUSD4 (ENSMMNG00015008051) #15	CCDC185 (ENSMMNG00015008075) #16	ENSMMNG00015008084	ENSMMNG00015008104 #18	CAPN2 (ENSMMNG00015008136) #19	TP53BP2 (ENSMMNG00015008201) #20	ENSMMNG00015008235 #22	DEGS1 (ENSMMNG00015008254) #23	NVL (ENSMMNG00015008286) #24	CNIH4 (ENSMMNG00015008342) #25	WDR26 (ENSMMNG00015008361) #26	CNIH3 (ENSMMNG00015008371) #28	LBR (ENSMMNG00015008386) #30	ENSMMNG00015008420 #31	SRP9 (ENSMMNG00015008443) #32	EPHX1 (ENSMMNG00015008464) #33	TMEM63A (ENSMMNG00015008488) #34	ENSMMNG00015008515 #35	PYCR2 (ENSMMNG00015008531) #36	ENSMMNG00015008553 #35	SDE2 (ENSMMNG00015008574)	ENSMMNG00015008586
Narwhal	MODERN SPECIES	297	ACAD11 (ENSMMNG00015004657)	ACKR4 (ENSMMNG00015004688)	DNAJC13 (ENSMMNG00015004696)	ACP3 (ENSMMNG00015004728)	ENSMMNG00015004742	CPNE4 (ENSMMNG00015004749)	MRPL3 (ENSMMNG00015004762)	NUDT16 (ENSMMNG00015004767)	ENSMMNG00015004772	ASTE1 (ENSMMNG00015004788)	ATP2C1 (ENSMMNG00015009607)	PIK3R4 (ENSMMNG00015009822)	COL6A6 (ENSMMNG00015009859)	COL6A5 (ENSMMNG00015009886)	ENSMMNG00015009901	ENSMMNG00015009902 #22	CAPN7 (ENSMMNG00015009911)	SH3BP5 (ENSMMNG00015009931)	METTL6 (ENSMMNG00015009949)	EAF1 (ENSMMNG00015009972)	HACL1 (ENSMMNG00015010128)	BTD (ENSMMNG00015010445)	ANKRD28 (ENSMMNG00015010516)	GALNT15 (ENSMMNG00015010623)	ENSMMNG00015010634	OXNAD1 (ENSMMNG00015010649)	RFTN1 (ENSMMNG00015010679)	ENSMMNG00015010705	ENSMMNG00015010745	PLCL2 (ENSMMNG00015010765)	TBC1D5 (ENSMMNG00015010791)
Suina	ANCESTRAL SPECIES	53										ENSGT00940000162464	ENSGT00940000160410 #15	ENSGT00740000115684 #16	ENSGT00940000160090 #18	ENSGT00940000154784.D.a.b #19	ENSGT00940000153463.b #20	ENSGT00390000002970 #22	ENSGT00560000077332	ENSGT00550000075080	ENSGT00940000155152	ENSGT00940000155446	ENSGT00390000016548	ENSGT00940000158821	ENSGT00940000156725	ENSGT00940000160882	ENSGT01100000266069	ENSGT00940000159457	ENSGT00940000153391.c.b.b	ENSGT00940000161586	ENSGT00940000156834	ENSGT00940000158639	ENSGT00950000182975.a.a.a.b
Pig	MODERN SPECIES	1	KIF26B (ENSSSCG00000010879)	SMYD3 (ENSSSCG00000022034)	TFB2M (ENSSSCG00000023775)	CNST (ENSSSCG00000010882)	ENSSSCG00000010884	ENSSSCG00000039234	ENSSSCG00000058221	ENSSSCG00000033907	ENSSSCG00000051637	TLR5 (ENSSSCG00000010885)	SUSD4 (ENSSSCG00000011176) #15	ENSSSCG00000010888 #16	CAPN8 (ENSSSCG00000034746) #18	CAPN2 (ENSSSCG00000029411) #19	TP53BP2 (ENSSSCG00000010894) #20	FBXO28 (ENSSSCG00000024618) #22	ASPM (ENSSSCG00000010896)	ZBTB41 (ENSSSCG00000010897)	CRB1 (ENSSSCG00000021897)	DENND1B (ENSSSCG00000010900)	C1orf53 (ENSSSCG00000032380)	LHX9 (ENSSSCG00000010903)	NEK7 (ENSSSCG00000010904)	ATP6V1G3 (ENSSSCG00000036270)	ENSSSCG00000051969	PTPRC (ENSSSCG00000010908)	NR5A2 (ENSSSCG00000024975)	ZNF281 (ENSSSCG00000010911)	KIF14 (ENSSSCG00000010912)	DDX59 (ENSSSCG00000024444)	CAMSAP2 (ENSSSCG00000027314)
Chacoan peccary	MODERN SPECIES	55	GPR25 (ENSCWAG00000000593)	CAMSAP2 (ENSCWAG00000000560)	DDX59 (ENSCWAG00000000529)	ENSCWAG00000000508	ENSCWAG00000000484	ENSCWAG00000000471	ENSCWAG00000000456	ENSCWAG00000000451	ENSCWAG00000000441	TLR5 (ENSCWAG00000000429)	SUSD4 (ENSCWAG00000000398) #15	CCDC185 (ENSCWAG00000000373) #16	ENSCWAG00000000360	CAPN2 (ENSCWAG00000000317) #19	TP53BP2 (ENSCWAG00000000274) #20	FBXO28 (ENSCWAG00000000237) #22	ASPM (ENSCWAG00000000126)	ZBTB41 (ENSCWAG00000000043)	CRB1 (ENSCWAG00000014814)	DENND1B (ENSCWAG00000014728)	ENSCWAG00000014689	C1orf53 (ENSCWAG00000014652)	LHX9 (ENSCWAG00000014377)
Atlantogenata	ANCESTRAL SPECIES	44					ENSGT00940000161139 #8	ENSGT00390000011405 #9	ENSGT00950000182767.a.a #10	ENSGT00390000016465 #11	ENSGT00390000006681 #12	ENSGT00390000016736.b #13	ENSGT00940000157407 #14	ENSGT00940000160410 #15	ENSGT00940000160090 #18	ENSGT00940000154784.D.a.b #19	ENSGT00940000153463.b #20	ENSGT00390000002970 #22	ENSGT00390000013448.a.a #23	ENSGT00570000079239 #24	ENSGT00950000182834.B #25	ENSGT00940000153634.b #26	ENSGT00950000182834.A.a.b.c #28	ENSGT00940000160505 #29	ENSGT00390000000417.a.a.b.a.b #30	ENSGT00940000157376 #31	ENSGT00390000018505 #32	ENSGT00390000002210.d #33	ENSGT00940000159576 #34	ENSGT00950000183044.a.a.a.c #36	ENSGT00390000010056 #35	ENSGT00530000063402.b	ENSGT01100000263504.a.b.b.a.b
Xenarthra	ANCESTRAL SPECIES	1416																ENSGT00390000002970 #22	ENSGT00390000013448.a.a #23	ENSGT00570000079239 #24
Armadillo	MODERN SPECIES	2159																FBXO28 (ENSDNOG00000039757) #22	DEGS1 (ENSDNOG00000039886) #23	NVL (ENSDNOG00000024916) #24
Sloth	MODERN SPECIES	3587																FBXO28 (ENSCHOG00000010255) #22
Afrotheria	ANCESTRAL SPECIES	47					ENSGT00940000161139 #8	ENSGT00390000011405 #9	ENSGT00950000182767.a.a #10	ENSGT00390000016465 #11	ENSGT00390000006681 #12	ENSGT00390000016736.b #13	ENSGT00940000157407 #14	ENSGT00940000160410 #15	ENSGT00940000160090 #18	ENSGT00940000154784.D.a.b #19	ENSGT00940000153463.b #20	ENSGT00390000002970 #22	ENSGT00390000013448.a.a #23	ENSGT00570000079239 #24	ENSGT00950000182834.B #25	ENSGT00940000153634.b #26	ENSGT00950000182834.A.a.b.c #28	ENSGT00940000160505 #29	ENSGT00390000000417.a.a.b.a.b #30	ENSGT00940000157376 #31	ENSGT00390000018505 #32	ENSGT00390000002210.d #33	ENSGT00940000159576 #34	ENSGT00950000183044.a.a.a.c #36	ENSGT00390000010056 #35	ENSGT00530000063402.b	ENSGT01100000263504.a.b.b.a.b
Tenrec	MODERN SPECIES	3936																FBXO28 (ENSETEG00000017632) #22
Afrotheria_a	ANCESTRAL SPECIES	48					ENSGT00940000161139 #8	ENSGT00390000011405 #9	ENSGT00950000182767.a.a #10	ENSGT00390000016465 #11	ENSGT00390000006681 #12	ENSGT00390000016736.b #13	ENSGT00940000157407 #14	ENSGT00940000160410 #15	ENSGT00940000160090 #18	ENSGT00940000154784.D.a.b #19	ENSGT00940000153463.b #20	ENSGT00390000002970 #22	ENSGT00390000013448.a.a #23	ENSGT00570000079239 #24	ENSGT00950000182834.B #25	ENSGT00940000153634.b #26	ENSGT00950000182834.A.a.b.c #28	ENSGT00940000160505 #29	ENSGT00390000000417.a.a.b.a.b #30	ENSGT00940000157376 #31	ENSGT00390000018505 #32	ENSGT00390000002210.d #33	ENSGT00940000159576 #34	ENSGT00950000183044.a.a.a.c #36	ENSGT00390000010056 #35	ENSGT00530000063402.b	ENSGT01100000263504.a.b.b.a.b
Elephant	MODERN SPECIES	126					HHIPL2 (ENSLAFG00000015995) #8	TAF1A (ENSLAFG00000016143) #9	MIA3 (ENSLAFG00000023331) #10	AIDA (ENSLAFG00000003450) #11	BROX (ENSLAFG00000003451) #12	FAM177B (ENSLAFG00000025794) #13	DISP1 (ENSLAFG00000012863) #14	SUSD4 (ENSLAFG00000005120) #15	CAPN8 (ENSLAFG00000001457) #18	CAPN2 (ENSLAFG00000001917) #19	TP53BP2 (ENSLAFG00000001919) #20	FBXO28 (ENSLAFG00000000621) #22	DEGS1 (ENSLAFG00000001728) #23	NVL (ENSLAFG00000014807) #24	CNIH4 (ENSLAFG00000014819) #25	WDR26 (ENSLAFG00000013154) #26	CNIH3 (ENSLAFG00000005787) #28	ENSLAFG00000026932 #29	LBR (ENSLAFG00000010594) #30	ENAH (ENSLAFG00000003931) #31	SRP9 (ENSLAFG00000004081) #32	EPHX1 (ENSLAFG00000017733) #33	TMEM63A (ENSLAFG00000017739) #34	ENSLAFG00000002109 #35	ENSLAFG00000002110 #36	ENSLAFG00000002111 #35	SDE2 (ENSLAFG00000002195)
Hyrax	MODERN SPECIES	3250																FBXO28 (ENSPCAG00000004968) #22
Marsupialia	ANCESTRAL SPECIES	3	ENSGT00950000183093.C	ENSGT00940000157671	ENSGT00940000161139 #8	ENSGT00390000011405 #9	ENSGT00950000182767.a #10	ENSGT00390000016465 #11	ENSGT00390000006681 #12	ENSGT00390000016736.b #13	ENSGT00940000157407 #14	ENSGT00940000162464	ENSGT00940000160410 #15	ENSGT00740000115684 #16	ENSGT00940000160090 #18	ENSGT00940000154784.D.a.b #19	ENSGT00940000153463.b #20	ENSGT00390000002970 #22	ENSGT00390000013448.a.a #23	ENSGT00570000079239 #24	ENSGT00950000182834.B.i #25	ENSGT00940000153634.b #26	ENSGT00950000182834.A.a.b.c #28	ENSGT00940000165101	ENSGT00390000000417.a.a.b.a.b #30	ENSGT00940000157376 #31	ENSGT00390000018505 #32	ENSGT00390000002210.d #33	ENSGT00940000159576 #34	ENSGT00950000183044.a.a.a.c.a #36	ENSGT00390000010056 #35	ENSGT00530000063402.b	ENSGT01100000263504.a.b.a.a
Marsupialia_b	ANCESTRAL SPECIES	6	ENSGT00950000183093.C	ENSGT00940000157671	ENSGT00940000161139 #8	ENSGT00390000011405 #9	ENSGT00950000182767.a #10	ENSGT00390000016465 #11	ENSGT00390000006681 #12	ENSGT00390000016736.b #13	ENSGT00940000157407 #14	ENSGT00940000162464	ENSGT00940000160410 #15	ENSGT00740000115684 #16	ENSGT00940000160090 #18	ENSGT00940000154784.D.a.b #19	ENSGT00940000153463.b #20	ENSGT00390000002970 #22	ENSGT00390000013448.a.a #23	ENSGT00570000079239 #24	ENSGT00950000182834.B.i #25	ENSGT00940000153634.b #26	ENSGT00950000182834.A.a.b.c #28	ENSGT00940000165101	ENSGT00390000000417.a.a.b.a.b #30	ENSGT00940000157376 #31	ENSGT00390000018505 #32	ENSGT00390000002210.d #33	ENSGT00940000159576 #34	ENSGT00950000183044.a.a.a.c.a #36	ENSGT00390000010056 #35	ENSGT00530000063402.b	ENSGT01100000263504.a.b.b.a.b
Diprotodontia	ANCESTRAL SPECIES	7	ENSGT00950000183093.C	ENSGT00940000157671	ENSGT00940000161139 #8	ENSGT00390000011405 #9	ENSGT00950000182767.a #10	ENSGT00390000016465 #11	ENSGT00390000006681 #12	ENSGT00390000016736.b #13	ENSGT00940000157407 #14	ENSGT00940000162464	ENSGT00940000160410 #15	ENSGT00740000115684 #16	ENSGT00940000160090 #18	ENSGT00940000154784.D.a.b #19	ENSGT00940000153463.b #20	ENSGT00390000002970 #22	ENSGT00390000013448.a.a #23	ENSGT00570000079239 #24	ENSGT00950000182834.B.i #25	ENSGT00940000153634.b #26	ENSGT00950000182834.A.a.b.c #28	ENSGT00940000160505 #29	ENSGT00390000000417.a.a.b.a.b #30	ENSGT00940000157376 #31	ENSGT00390000018505 #32	ENSGT00390000002210.d #33	ENSGT00940000159576 #34	ENSGT00950000183044.a.a.a.c.a #36	ENSGT00390000010056 #35	ENSGT00530000063402.b	ENSGT01100000263504.a.b.b.a.b
Wallaby	MODERN SPECIES	5111																FBXO28 (ENSMEUG00000005711) #22
Diprotodontia_a	ANCESTRAL SPECIES	3	ENSGT00940000157671	ENSGT00940000161139 #8	ENSGT00390000011405 #9	ENSGT00950000182767.a #10	ENSGT00390000016465 #11	ENSGT00390000006681 #12	ENSGT00390000016736.b #13	ENSGT01000000214902	ENSGT00940000157407 #14	ENSGT00940000162464	ENSGT00940000160410 #15	ENSGT00740000115684 #16	ENSGT00940000160090 #18	ENSGT00940000154784.D.a.b #19	ENSGT00940000153463.b #20	ENSGT00390000002970 #22	ENSGT00390000013448.a.a #23	ENSGT00570000079239 #24	ENSGT00950000182834.B.i #25	ENSGT00940000153634.b #26	ENSGT00950000182834.A.a.b.c #28	ENSGT00940000160505 #29	ENSGT00390000000417.a.a.b.a.b #30	ENSGT00940000157376 #31	ENSGT00390000018505 #32	ENSGT00390000002210.d #33	ENSGT00940000159576 #34	ENSGT00940000154582.b.b.b.b	ENSGT00950000183044.a.a.a.c.a #36	ENSGT00390000010056 #35	ENSGT00530000063402.b
koala	MODERN SPECIES	12	HHIPL2 (ENSPCIG00000029398) #8	TAF1A (ENSPCIG00000029400) #9	ENSPCIG00000029404 ##10	ENSPCIG00000036556 #10	AIDA (ENSPCIG00000029406) #11	BROX (ENSPCIG00000029407) #12	ENSPCIG00000029408 #13	ENSPCIG00000029410	DISP1 (ENSPCIG00000029409) #14	TLR5 (ENSPCIG00000029412)	SUSD4 (ENSPCIG00000033276) #15	ENSPCIG00000016889 #16	ENSPCIG00000016425 #18	CAPN2 (ENSPCIG00000016896) #19	TP53BP2 (ENSPCIG00000016901) #20	FBXO28 (ENSPCIG00000016902) #22	DEGS1 (ENSPCIG00000016903) #23	NVL (ENSPCIG00000016904) #24	ENSPCIG00000031021	ENSPCIG00000016909 #25	WDR26 (ENSPCIG00000016910) #26	CNIH3 (ENSPCIG00000016913) #28	ENSPCIG00000016915	ENSPCIG00000016922 #29	ENSPCIG00000016927 #29	LBR (ENSPCIG00000016938) #30	ENAH (ENSPCIG00000017396) #31	SRP9 (ENSPCIG00000017399) #32	EPHX1 (ENSPCIG00000017401) #33	TMEM63A (ENSPCIG00000017422) #34	ENSPCIG00000017425
Common wonbat	DUPLICATION
Common wonbat	MODERN SPECIES	1035	ENSVURG00010016897	ENSVURG00010016894	ENSVURG00010016881 #8	ENSVURG00010016867 #9	ENSVURG00010016790 #10	ENSVURG00010016756 #11	ENSVURG00010016732 #12	ENSVURG00010016713	ENSVURG00010016705 #14	ENSVURG00010016696	ENSVURG00010016682 #15	ENSVURG00010016667 #16	ENSVURG00010016633 #18	ENSVURG00010016578 #19	ENSVURG00010016564 #20	ENSVURG00010016554 #22	ENSVURG00010016543 #23	ENSVURG00010016506 #24	ENSVURG00010016496 #25	ENSVURG00010016481 #26	ENSVURG00010016460 #28	ENSVURG00010016446	ENSVURG00010016426 #29	ENSVURG00010016408 #30	ENSVURG00010016298 #31	ENSVURG00010016263 #32	ENSVURG00010016255 #33	ENSVURG00010016235 #34	ENSVURG00010016227	ENSVURG00010016219 #36	ENSVURG00010016197 #35
Common wonbat	MODERN SPECIES	1035	ENSVURG00010009750	ENSVURG00010009729 #8	ENSVURG00010009711 #9	ENSVURG00010009646 #10	ENSVURG00010009629 #11	ENSVURG00010009608 #12	ENSVURG00010009586	ENSVURG00010009575 #14	ENSVURG00010009568	ENSVURG00010009558	ENSVURG00010009543 #15	ENSVURG00010009513 #16	ENSVURG00010009483 #18	ENSVURG00010009423 #19	ENSVURG00010009394 #20	ENSVURG00010009368 #22	ENSVURG00010009362 #23	ENSVURG00010009330 #24	ENSVURG00010009318 #25	ENSVURG00010009303 #26	ENSVURG00010009284 #28	ENSVURG00010009246	ENSVURG00010009226 #29	ENSVURG00010009206 #30	ENSVURG00010009183 #31	ENSVURG00010009142 #32	ENSVURG00010009136 #33	ENSVURG00010009115 #34	ENSVURG00010009085	ENSVURG00010009077 #36	ENSVURG00010009049 #35
Tasmanian devil	MODERN SPECIES	3	ENSSHAG00000012512	DUSP10 (ENSSHAG00000025565)	HHIPL2 (ENSSHAG00000007524) #8	TAF1A (ENSSHAG00000007872) #9	ENSSHAG00000029037 ##10	ENSSHAG00000008328 #10	AIDA (ENSSHAG00000008867) #11	BROX (ENSSHAG00000009264) #12	DISP1 (ENSSHAG00000011075) #14	TLR5 (ENSSHAG00000025032)	SUSD4 (ENSSHAG00000012796) #15	ENSSHAG00000013936 #16	ENSSHAG00000014684 #18	CAPN2 (ENSSHAG00000027599) #19	TP53BP2 (ENSSHAG00000015392) #20	FBXO28 (ENSSHAG00000029324) #22	DEGS1 (ENSSHAG00000004372) #23	NVL (ENSSHAG00000005391) #24	CNIH4 (ENSSHAG00000027162) #25	WDR26 (ENSSHAG00000007205) #26	ENSSHAG00000024047	LBR (ENSSHAG00000011098) #30	ENAH (ENSSHAG00000029257) #31	SRP9 (ENSSHAG00000013504) #32	EPHX1 (ENSSHAG00000013636) #33	TMEM63A (ENSSHAG00000020965) #34	ENSSHAG00000014345 #36	ENSSHAG00000014418 #35	SDE2 (ENSSHAG00000023306)	ENSSHAG00000031306	ACBD3 (ENSSHAG00000007387)
Opossum	MODERN SPECIES	1	HHIPL2 (ENSMODG00000004695) #8	TAF1A (ENSMODG00000004705) #9	ENSMODG00000004743 ##10	ENSMODG00000037146 #10	AIDA (ENSMODG00000004774) #11	BROX (ENSMODG00000004803) #12	FAM177B (ENSMODG00000041971) #13	DISP1 (ENSMODG00000042419) #14	TLR5 (ENSMODG00000024704)	SUSD4 (ENSMODG00000004959) #15	ENSMODG00000048264	ENSMODG00000004964 #16	CAPN8 (ENSMODG00000005003) #18	CAPN2 (ENSMODG00000005094) #19	TP53BP2 (ENSMODG00000005115) #20	DEGS1 (ENSMODG00000005128) #22	NVL (ENSMODG00000005163) #24	ENSMODG00000005180 #25	WDR26 (ENSMODG00000005227) #26	ENSMODG00000040191	CNIH3 (ENSMODG00000038171) #28	ENSMODG00000005248	ENSMODG00000005822	ENSMODG00000043253	ENSMODG00000005848 #30	ENAH (ENSMODG00000005856) #31	SRP9 (ENSMODG00000038570) #32	EPHX1 (ENSMODG00000005882) #33	TMEM63A (ENSMODG00000005934) #34	ENSMODG00000005956 #36	ENSMODG00000005964 #35
Platypus	MODERN SPECIES	10	DUSP10 (ENSOANG00000001437)	HHIPL2 (ENSOANG00000001438) #8	TAF1A (ENSOANG00000001439) #9	ENSOANG00000001440 #10	AIDA (ENSOANG00000001441) #11	BROX (ENSOANG00000001442) #12	FAM177B (ENSOANG00000019774) #13	DISP1 (ENSOANG00000001443) #14	ENSOANG00000045063	ENSOANG00000040593	SUSD4 (ENSOANG00000001446) #15	ENSOANG00000001447 #16	CAPN8 (ENSOANG00000001449) #18	CAPN2 (ENSOANG00000001450) #19	TP53BP2 (ENSOANG00000001453) #20	FBXO28 (ENSOANG00000001454) #22	DEGS1 (ENSOANG00000001455) #23	NVL (ENSOANG00000001457) #24	CNIH4 (ENSOANG00000043482) #25	WDR26 (ENSOANG00000037128) #26	ENSOANG00000050981 #28	ENSOANG00000001463	LBR (ENSOANG00000001469) #30	ENAH (ENSOANG00000001471) #31	SRP9 (ENSOANG00000050463) #32	EPHX1 (ENSOANG00000001473) #33	ENSOANG00000001474 #34	ENSOANG00000001480 #35	SDE2 (ENSOANG00000001481)	ENSOANG00000037953	ENSOANG00000050350