Tetrapoda	ANCESTRAL SPECIES	14	ENSGT00940000157444	ENSGT00940000160986	ENSGT00940000157238	ENSGT00390000011897	ENSGT00390000004860	ENSGT00620000089227	ENSGT00550000074921	ENSGT00940000157569	ENSGT00940000156027	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT01030000235208	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00950000183041.A	ENSGT00390000014109	ENSGT00940000164112.a	ENSGT00940000161980	ENSGT00530000064244.a	ENSGT00950000183014.f.b.a.b	ENSGT00940000163561	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #31
Amniota	ANCESTRAL SPECIES	22	ENSGT00940000160986	ENSGT00940000157238	ENSGT00390000011897	ENSGT00390000004860	ENSGT00620000089227	ENSGT00550000074921	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT01030000235208	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00950000183041.A	ENSGT00390000014109	ENSGT00940000164112.a	ENSGT00940000161980	ENSGT00530000064244.a	ENSGT00940000163561	ENSGT00950000183014.f.b.a.b	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #31
Mammalia	ANCESTRAL SPECIES	18	ENSGT00940000157444	ENSGT00940000160986	ENSGT00940000157238	ENSGT00390000011897	ENSGT00390000004860	ENSGT00550000074921	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT01030000235208	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00950000183041.A.f	ENSGT00950000183041.A.e	ENSGT00390000014109	ENSGT00940000161980	ENSGT00530000064244.a	ENSGT00940000163561	ENSGT00950000183014.f.b.a.b	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #31
Theria	ANCESTRAL SPECIES	28	ENSGT00390000011082	ENSGT00390000014353	ENSGT00940000159835	ENSGT00940000155616	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT01030000235208	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00390000017530 #28	ENSGT00390000017740.a.b #29	ENSGT00940000153973 #30	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189
Eutheria	ANCESTRAL SPECIES	14	ENSGT00390000011082	ENSGT00390000014353	ENSGT00940000159835	ENSGT00940000155616	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT01030000235208	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00390000017530 #28	ENSGT00390000017740.a.b #29	ENSGT00940000153973.c.a.a ##30	ENSGT00940000153973.c.a.b.b ##30	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a
Boreoeutheria	ANCESTRAL SPECIES	2	ENSGT00390000014353	ENSGT00940000159835	ENSGT00940000155616.c.a	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00910000147252	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT01030000235208	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00390000017530 #28	ENSGT00390000017740.a.b #29	ENSGT00940000153973.c.a.a ##30	ENSGT00940000153973.c.a.b.b ##30	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000175447	ENSGT00930000152979
Euarchontoglires	ANCESTRAL SPECIES	2	ENSGT00940000159835	ENSGT01090000263461	ENSGT00940000155616.c.a	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00910000147252	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00390000017530 #28	ENSGT00390000017740.a.b #29	ENSGT00940000153973.c.a.a ##30	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT00930000152979	ENSGT00940000175447	ENSGT01020000230394.e.b.a
Primates	ANCESTRAL SPECIES	1	ENSGT00940000159835	ENSGT01090000263461	ENSGT00940000155616.c.a	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00910000147252	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00390000017530 #28	ENSGT00390000017740.a.b #29	ENSGT00940000153973.c.a.a ##30	ENSGT00940000153973.c.a.b.b ##30	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000175447	ENSGT00930000152979	ENSGT00940000160900
Haplorrhini	ANCESTRAL SPECIES	5	ENSGT00940000159835	ENSGT01090000263461	ENSGT00940000155616.c.a	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00910000147252	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00390000017530 #28	ENSGT00390000017740.a.b #29	ENSGT00940000153973.c.a.a ##30
Simiiformes	ANCESTRAL SPECIES	1	ENSGT00940000159835	ENSGT01090000263461	ENSGT00940000155616.c.a	ENSGT00390000004064	ENSGT00940000153393.B.v	ENSGT00910000147252	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00390000017530 #28	ENSGT00390000017740.a.b #29	ENSGT00940000153973.c.a.a ##30	ENSGT00940000153973.c.a.b.b ##30	ENSGT00940000156915 #31	ENSGT00390000009491.d #32	ENSGT00940000156308 #33	ENSGT00940000156047 #34	ENSGT00940000158523 #35	ENSGT00390000013132 #36	ENSGT00390000009671 #37
Catarrhini	ANCESTRAL SPECIES	2	ENSGT00940000155616.c.a	ENSGT00910000147532	ENSGT00390000004064	ENSGT00940000153393.B.v	ENSGT00910000147252	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00390000016970.h	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00390000017530 #28	ENSGT00390000017740.a.b #29	ENSGT00940000153973.c.a.a ##30	ENSGT00940000153973.c.a.b.b ##30	ENSGT00940000156915 #31	ENSGT00390000009491.d #32	ENSGT00940000156308 #33	ENSGT00940000156047 #34	ENSGT00910000147988	ENSGT00940000158523 #35	ENSGT00390000013132.q.a #36
Cercopithecidae	ANCESTRAL SPECIES	1	ENSGT00910000147532	ENSGT00390000004064	ENSGT00940000153393.B.v	ENSGT00910000147252	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00390000013132.q.b ##36	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00390000016970.h	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT00950000183077.a.b #25	ENSGT00940000156084.bb #26	ENSGT00390000017530 #28	ENSGT00390000017740.a.b #29	ENSGT00940000153973.c.a.a ##30	ENSGT00940000156915 #31	ENSGT00390000009491.d #32	ENSGT00940000156308 #33	ENSGT00940000156047 #34	ENSGT00910000147988	ENSGT00940000158523 #35	ENSGT00390000013132.q.a.a #36	ENSGT00390000009671 #37
Cercopithecinae	ANCESTRAL SPECIES	5	ENSGT00940000154917.f	ENSGT00940000155616.c.a.e	ENSGT00390000004064	ENSGT00940000153393.B.v	ENSGT00910000147252	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00390000013132.q.b ##36	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT00950000183077.a.b #25	ENSGT00940000156084.bb #26	ENSGT00390000017530 #28	ENSGT00390000017740.a.b #29	ENSGT00940000153973.c.a.a ##30	ENSGT00940000153973.c.a.b.b ##30	ENSGT00940000156915 #31	ENSGT00390000009491.d #32	ENSGT00940000156308 #33	ENSGT00940000156047 #34	ENSGT00910000147988	ENSGT00940000158523 #35	ENSGT00390000013132.q.a.a #36
Cercopithecinae_a	ANCESTRAL SPECIES	5	ENSGT00390000004064	ENSGT00940000153393.B.v	ENSGT00910000147252	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00390000013132.q.b ##36	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00390000016970.h	ENSGT00390000009405.b.c.b.b	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT00950000183077.a.b #25	ENSGT00940000156084.bb #26	ENSGT00390000017530 #28	ENSGT00390000017740.a.b #29	ENSGT00940000153973.c.a.a.e.b ##30	ENSGT00940000153973.c.a.b.b ##30	ENSGT00940000156915 #31	ENSGT00390000009491.d #32	ENSGT00940000156308 #33	ENSGT00940000156047 #34	ENSGT00910000147988	ENSGT00940000158523 #35	ENSGT00390000013132.q.a.a #36
Cercopithecinae_b	ANCESTRAL SPECIES		ENSGT00940000153393.B.v	ENSGT00910000147252	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00390000013132.q.b ##36	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00390000016970.h	ENSGT00390000009405.b.c.b.b	ENSGT01100000263509.a.a.b.b.a.b.b.b.a.a.a.a.b.b	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT00950000183077.a.b #25	ENSGT00940000156084.bb #26	ENSGT00390000017530 #28	ENSGT00390000017740.a.b #29	ENSGT00940000153973.c.a.a.d ##30	ENSGT00940000153973.c.a.b.b ##30	ENSGT00940000156915 #31	ENSGT00390000009491.d #32	ENSGT00940000156308 #33	ENSGT00940000156047 #34	ENSGT00910000147988	ENSGT00940000158523 #35	ENSGT00390000013132.q.a.a #36
Cercopithecinae_d	ANCESTRAL SPECIES	12	ENSGT00390000004064	ENSGT00940000153393.B.v	ENSGT00910000147252	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00390000013132.q.b ##36	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00390000016970.h	ENSGT00390000009405.b.c.b.b	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT00950000183077.a.b #25	ENSGT00940000156084.bb #26	ENSGT00390000017530 #28	ENSGT00390000017740.a.b #29	ENSGT00940000153973.c.a.b.b ##30	ENSGT00940000156915 #31	ENSGT00390000009491.d #32	ENSGT00940000156308 #33	ENSGT00940000156047 #34	ENSGT00910000147988	ENSGT00940000158523 #35	ENSGT00390000013132.q.a.a #36	ENSGT00390000009671 #37
Drill	MODERN SPECIES	874														SYN2 (ENSMLEG00000030880) #20	TIMP4 (ENSMLEG00000040251) #21	PPARG (ENSMLEG00000043422) #22	TSEN2 (ENSMLEG00000038210) #23	MKRN2OS (ENSMLEG00000006675) #24	MKRN2 (ENSMLEG00000006880) #25	RAF1 (ENSMLEG00000029839) #26	ENSMLEG00000039626 #27	TMEM40 (ENSMLEG00000039986) #28	CAND2 (ENSMLEG00000034596) #29	RPL32 (ENSMLEG00000033655) #30	IQSEC1 (ENSMLEG00000035708) #31	NUP210 (ENSMLEG00000038717) #32	HDAC11 (ENSMLEG00000038310) #33	FBLN2 (ENSMLEG00000040866) #34	WNT7A (ENSMLEG00000042427) #35	ENSMLEG00000031201 #36	TMEM43 (ENSMLEG00000035818) #37
Sooty mangabey	MODERN SPECIES	650	GHRL (ENSCATG00000029881)	SEC13 (ENSCATG00000032325)	ATP2B2 (ENSCATG00000033513)	SLC6A11 (ENSCATG00000032556)	SLC6A1 (ENSCATG00000019250)	ENSCATG00000031939 ##36	HRH1 (ENSCATG00000000316)	ATG7 (ENSCATG00000034745)	VGLL4 (ENSCATG00000041543)	TAMM41 (ENSCATG00000033399)	ENSCATG00000031162	ENSCATG00000042881	SYN2 (ENSCATG00000031791) #20	TIMP4 (ENSCATG00000034145) #21	ENSCATG00000017268	PPARG (ENSCATG00000022947) #22	TSEN2 (ENSCATG00000031911) #23	MKRN2OS (ENSCATG00000040481) #24	MKRN2 (ENSCATG00000041591) #25	ENSCATG00000035852 #26	ENSCATG00000001547	ENSCATG00000031525 #27	TMEM40 (ENSCATG00000027847) #28	CAND2 (ENSCATG00000038720) #29	RPL32 (ENSCATG00000038198) ##30	IQSEC1 (ENSCATG00000037864) #31	NUP210 (ENSCATG00000035260) #32	HDAC11 (ENSCATG00000026123) #33	FBLN2 (ENSCATG00000038061) #34	ENSCATG00000033105	WNT7A (ENSCATG00000033711) #35
Olive baboon	MODERN SPECIES	11	IRAK2 (ENSPANG00000021438)	TATDN2 (ENSPANG00000008626)	GHRL (ENSPANG00000022005)	SEC13 (ENSPANG00000033927)	ATP2B2 (ENSPANG00000012883)	SLC6A11 (ENSPANG00000009913)	SLC6A1 (ENSPANG00000009643)	HRH1 (ENSPANG00000031157)	ATG7 (ENSPANG00000019142)	VGLL4 (ENSPANG00000024761)	TAMM41 (ENSPANG00000025444)	ENSPANG00000031360	ENSPANG00000045955	TIMP4 (ENSPANG00000001070) #21	SYN2 (ENSPANG00000024762) #20	PPARG (ENSPANG00000016461) #22	MKRN2OS (ENSPANG00000008481) #24	TSEN2 (ENSPANG00000013415) #23	MKRN2 (ENSPANG00000021307) #25	ENSPANG00000035680	RAF1 (ENSPANG00000008568) #26	TMEM40 (ENSPANG00000014208) #28	CAND2 (ENSPANG00000018464) #29	ENSPANG00000007693 ##30	IQSEC1 (ENSPANG00000006877) #31	NUP210 (ENSPANG00000006878) #32	HDAC11 (ENSPANG00000024163) #33	ENSPANG00000047403 #34	ENSPANG00000007694 #34	WNT7A (ENSPANG00000046909) #35	CHCHD4 (ENSPANG00000025946) #36
Macaca	ANCESTRAL SPECIES	5	ENSGT00940000154917.f	ENSGT00390000004064	ENSGT00940000153393.B.v	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00390000013132.q.b ##36	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00390000016970.h	ENSGT00390000009405.b.c.b.b	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT00950000183077.a.b #25	ENSGT00940000156084.bb #26	ENSGT00390000017530 #28	ENSGT00390000017740.a.b #29	ENSGT00940000153973.c.a.b.a.a ##30	ENSGT00940000156915 #31	ENSGT00390000009491.d #32	ENSGT00940000156308 #33	ENSGT00940000156047 #34	ENSGT00940000158523 #35	ENSGT00390000013132.q.a.a #36	ENSGT00390000009671 #37	ENSGT00390000005194
Macaca_a	ANCESTRAL SPECIES	5	ENSGT00390000014353	ENSGT00940000159835	ENSGT00940000155616.c.a.e	ENSGT00390000004064	ENSGT00940000153393.B.v	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT01100000263493.a.b.a.b.a.a.b.a.b.b.b.a.b.b.a.a.b.a.a	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT00950000183077.a.b #25	ENSGT00940000156084.bb #26	ENSGT00390000017530 #28	ENSGT00390000017740.a.b #29	ENSGT00940000153973.c.a.a.e.b ##30	ENSGT00940000156915 #31	ENSGT00390000009491.d #32	ENSGT01100000263539.b.a.a.a.a.a.b.b.a.a.a.a.a.b.a.a.a.a.b	ENSGT00940000156308 #33	ENSGT00940000156047 #34	ENSGT00940000158523 #35	ENSGT00390000013132.r ##36	ENSGT00390000009671 #37
Crab-eating macaque	MODERN SPECIES	11	IRAK2 (ENSMFAG00000002038)	TATDN2 (ENSMFAG00000044226)	GHRL (ENSMFAG00000043669)	SEC13 (ENSMFAG00000037200)	ATP2B2 (ENSMFAG00000034151)	SLC6A11 (ENSMFAG00000034176)	SLC6A1 (ENSMFAG00000007438)	HRH1 (ENSMFAG00000030336)	ATG7 (ENSMFAG00000040779)	VGLL4 (ENSMFAG00000009745)	TAMM41 (ENSMFAG00000033931)	ENSMFAG00000059255	SYN2 (ENSMFAG00000041997) #20	ENSMFAG00000021078	TIMP4 (ENSMFAG00000052548) #21	PPARG (ENSMFAG00000034317) #22	TSEN2 (ENSMFAG00000038583) #23	MKRN2OS (ENSMFAG00000031892) #24	MKRN2 (ENSMFAG00000035845) #25	ENSMFAG00000051059	RAF1 (ENSMFAG00000038061) #26	TMEM40 (ENSMFAG00000039365) #28	CAND2 (ENSMFAG00000044298) #29	ENSMFAG00000045190 ##30	IQSEC1 (ENSMFAG00000043873) #31	NUP210 (ENSMFAG00000044461) #32	ENSMFAG00000058794	HDAC11 (ENSMFAG00000036363) #33	FBLN2 (ENSMFAG00000003835) #34	WNT7A (ENSMFAG00000044809) #35	ENSMFAG00000044351 ##36
Rhesus	MODERN SPECIES	11	IRAK2 (ENSMMUG00000019932)	TATDN2 (ENSMMUG00000019933)	GHRL (ENSMMUG00000065159)	SEC13 (ENSMMUG00000019936)	ATP2B2 (ENSMMUG00000019938)	SLC6A11 (ENSMMUG00000005916)	SLC6A1 (ENSMMUG00000005917)	HRH1 (ENSMMUG00000056308)	ATG7 (ENSMMUG00000021804)	VGLL4 (ENSMMUG00000021806)	ENSMMUG00000062782	TAMM41 (ENSMMUG00000013372)	ENSMMUG00000055179	SYN2 (ENSMMUG00000001120) #20	TIMP4 (ENSMMUG00000001127) #21	PPARG (ENSMMUG00000007191) #22	TSEN2 (ENSMMUG00000007195) #23	MKRN2OS (ENSMMUG00000031993) #24	MKRN2 (ENSMMUG00000009536) #25	RAF1 (ENSMMUG00000007450) #26	TMEM40 (ENSMMUG00000010276) #28	CAND2 (ENSMMUG00000001339) #29	RPL32 (ENSMMUG00000001340) ##30	IQSEC1 (ENSMMUG00000001342) #31	NUP210 (ENSMMUG00000015979) #32	ENSMMUG00000056487	HDAC11 (ENSMMUG00000001369) #33	FBLN2 (ENSMMUG00000017659) #34	WNT7A (ENSMMUG00000018445) #35	XPC (ENSMMUG00000023125)	TMEM43 (ENSMMUG00000023124) #37
Pig-tailed macaque	MODERN SPECIES	546	ENSMNEG00000040281	GHRL (ENSMNEG00000043861)	SEC13 (ENSMNEG00000032098)	ATP2B2 (ENSMNEG00000040193)	SLC6A11 (ENSMNEG00000031997)	SLC6A1 (ENSMNEG00000031841)	ENSMNEG00000030516 ##36	HRH1 (ENSMNEG00000008240)	ATG7 (ENSMNEG00000028392)	VGLL4 (ENSMNEG00000039421)	TAMM41 (ENSMNEG00000040547)	ENSMNEG00000042157	ENSMNEG00000024024	SYN2 (ENSMNEG00000033226) #20	TIMP4 (ENSMNEG00000028992) #21	PPARG (ENSMNEG00000028217) #22	TSEN2 (ENSMNEG00000025898) #23	MKRN2OS (ENSMNEG00000034066) #24	MKRN2 (ENSMNEG00000031197) #25	RAF1 (ENSMNEG00000040519) #26	TMEM40 (ENSMNEG00000027829) #28	CAND2 (ENSMNEG00000044168) #29	RPL32 (ENSMNEG00000030893) ##30	IQSEC1 (ENSMNEG00000042270) #31	ENSMNEG00000029455	NUP210 (ENSMNEG00000041495) #32	HDAC11 (ENSMNEG00000040546) #33	FBLN2 (ENSMNEG00000035537) #34	WNT7A (ENSMNEG00000037464) #35	ENSMNEG00000040402 #36	TMEM43 (ENSMNEG00000032802) #37
Vervet Monkey	MODERN SPECIES	14	VHL (ENSCSAG00000010113)	IRAK2 (ENSCSAG00000010087)	TATDN2 (ENSCSAG00000010035)	GHRL (ENSCSAG00000010031)	SEC13 (ENSCSAG00000010026)	ATP2B2 (ENSCSAG00000010018)	ENSCSAG00000010009	SLC6A11 (ENSCSAG00000009991)	SLC6A1 (ENSCSAG00000009912)	HRH1 (ENSCSAG00000018810)	ATG7 (ENSCSAG00000009887)	VGLL4 (ENSCSAG00000009873)	TAMM41 (ENSCSAG00000009866)	SYN2 (ENSCSAG00000009855) #20	TIMP4 (ENSCSAG00000009845) #21	PPARG (ENSCSAG00000009839) #22	TSEN2 (ENSCSAG00000009822) #23	MKRN2OS (ENSCSAG00000009764) #24	MKRN2 (ENSCSAG00000009754) #25	RAF1 (ENSCSAG00000009721) #26	TMEM40 (ENSCSAG00000009604) #28	CAND2 (ENSCSAG00000009557) #29	RPL32 (ENSCSAG00000009485) ##30	IQSEC1 (ENSCSAG00000009482) #31	NUP210 (ENSCSAG00000009474) #32	HDAC11 (ENSCSAG00000009462) #33	FBLN2 (ENSCSAG00000009449) #34	WNT7A (ENSCSAG00000009439) #35	CHCHD4 (ENSCSAG00000009431) ##36	TMEM43 (ENSCSAG00000009426) #37	XPC (ENSCSAG00000009411)
Rhinopithecus	DUPLICATION
Rhinopithecus	ANCESTRAL SPECIES																	ENSGT00940000158273.q #22
Black snub-nosed monkey	MODERN SPECIES	1208												TIMP4 (ENSRBIG00000032580) #21	SYN2 (ENSRBIG00000030722) #20	ENSRBIG00000029744	ENSRBIG00000036452	ENSRBIG00000033045 #22	UCK2 (ENSRBIG00000023390)	ENSRBIG00000028586
Rhinopithecus	ANCESTRAL SPECIES	113	ENSGT00390000004064	ENSGT00940000153393.B.v	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00910000148795	ENSGT00390000013132.q.b ##36	ENSGT00940000160690	ENSGT00390000017509	ENSGT00910000148924	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00390000016970.h	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273.r #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT00950000183077.a.b #25	ENSGT00940000156084.bb #26
Black snub-nosed monkey	MODERN SPECIES	1833																PPARG (ENSRBIG00000042269) #22	TSEN2 (ENSRBIG00000033133) #23	MKRN2OS (ENSRBIG00000033018) #24	MKRN2 (ENSRBIG00000039128) #25	ENSRBIG00000029284 #26	ENSRBIG00000027349 #27
Golden snub-nosed monkey	MODERN SPECIES	2016			SEC13 (ENSRROG00000040800)	ATP2B2 (ENSRROG00000033593)	SLC6A11 (ENSRROG00000031463)	SLC6A1 (ENSRROG00000040161)	ENSRROG00000044510 ##36	HRH1 (ENSRROG00000012382)	ATG7 (ENSRROG00000041008)	ENSRROG00000038335	VGLL4 (ENSRROG00000032842)	TAMM41 (ENSRROG00000034628)	ENSRROG00000042628	SYN2 (ENSRROG00000040768) #20	TIMP4 (ENSRROG00000043357) #21	PPARG (ENSRROG00000044807) #22	ENSRROG00000034587	TSEN2 (ENSRROG00000041156) #23	MKRN2OS (ENSRROG00000037999) #24	MKRN2 (ENSRROG00000033767) #25	ENSRROG00000041930 #26
Hominoidea	ANCESTRAL SPECIES	2	ENSGT00910000147532	ENSGT00390000004064	ENSGT00940000153393.B.v	ENSGT00910000147252	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00390000013132.q.a.c #36	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00390000016970.h	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266.a #23	ENSGT00390000003839 #24	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00390000017530 #28	ENSGT00390000017740.a.b #29	ENSGT00940000153973.c.a.a ##30	ENSGT00940000156915 #31	ENSGT00390000009491.d #32	ENSGT00940000156308 #33	ENSGT00940000156047 #34	ENSGT00910000147988	ENSGT00940000158523 #35	ENSGT00390000013132.q.a.d #36	ENSGT00390000009671 #37
Hominidae	ANCESTRAL SPECIES	2	ENSGT00910000147532	ENSGT00390000004064	ENSGT00940000153393.B.v	ENSGT00910000147252	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00390000013132.q.a.c #36	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00390000016970.h	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266.a #23	ENSGT00390000003839 #24	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00390000017530 #28	ENSGT00390000017740.a.b #29	ENSGT00940000153973.c.a.a ##30	ENSGT00940000156915 #31	ENSGT00390000009491.d #32	ENSGT00940000156308 #33	ENSGT00940000156047 #34	ENSGT00910000147988	ENSGT00940000158523 #35	ENSGT00390000013132.q.a.d #36	ENSGT00390000009671 #37
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	2	ENSGT00910000147532	ENSGT00390000004064	ENSGT00940000153393.B.v	ENSGT00910000147252	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00390000013132.q.a.c #36	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00390000016970.h	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266.a #23	ENSGT00390000003839 #24	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00390000017530 #28	ENSGT00940000153309.c.a.e.b	ENSGT00390000017740.a.b #29	ENSGT00940000153973.c.a.b.b ##30	ENSGT00940000156915 #31	ENSGT00390000009491.d #32	ENSGT00940000156308 #33	ENSGT00940000156047 #34	ENSGT00910000147988	ENSGT00940000158523 #35	ENSGT00390000013132.q.a.d #36
Homo/Pan group	ANCESTRAL SPECIES	3	ENSGT00910000147532	ENSGT00390000004064	ENSGT00940000153393.B.v	ENSGT00910000147252	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00390000013132.q.a.c #36	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00390000016970.h	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266.a #23	ENSGT00390000003839 #24	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00390000017530 #28	ENSGT00940000153309.c.a.e.b	ENSGT00390000017740.a.b #29	ENSGT00940000153973.c.a.b.b ##30	ENSGT00940000156915 #31	ENSGT00390000009491.d #32	ENSGT00940000156308 #33	ENSGT00940000156047 #34	ENSGT00940000158523 #35	ENSGT00390000013132.q.a.d #36	ENSGT00390000009671 #37
Pan	ANCESTRAL SPECIES	2	ENSGT00390000004064	ENSGT00940000153393.B.v	ENSGT00910000147252	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00390000013132.q.a.c #36	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00390000016970.h	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00910000148097	ENSGT00940000158273 #22	ENSGT00390000013266.a #23	ENSGT00390000003839 #24	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00390000017530 #28	ENSGT00940000153309.c.a.e.b	ENSGT00390000017740.a.b #29	ENSGT00940000153973.c.a.a ##30	ENSGT00940000153973.c.a.b.b ##30	ENSGT00940000156915 #31	ENSGT00390000009491.d #32	ENSGT00940000156308 #33	ENSGT00940000156047 #34	ENSGT00940000158523 #35	ENSGT00390000013132.q.a.d #36
Chimpanzee	MODERN SPECIES	16	SEC13 (ENSPTRG00000014619)	ATP2B2 (ENSPTRG00000014620)	ENSPTRG00000042808	SLC6A11 (ENSPTRG00000014621)	SLC6A1 (ENSPTRG00000014622)	ENSPTRG00000050374 #36	HRH1 (ENSPTRG00000030304)	ATG7 (ENSPTRG00000014625)	VGLL4 (ENSPTRG00000014626)	TAMM41 (ENSPTRG00000014628)	ENSPTRG00000049448	SYN2 (ENSPTRG00000052430) #20	TIMP4 (ENSPTRG00000014630) #21	ENSPTRG00000043822	ENSPTRG00000045342	PPARG (ENSPTRG00000014632) #22	TSEN2 (ENSPTRG00000014633) #23	MKRN2OS (ENSPTRG00000046408) #24	MKRN2 (ENSPTRG00000014634) #25	RAF1 (ENSPTRG00000014635) #26	TMEM40 (ENSPTRG00000014636) #28	ENSPTRG00000051489	CAND2 (ENSPTRG00000014637) #29	ENSPTRG00000050657 ##30	IQSEC1 (ENSPTRG00000014639) #31	ENSPTRG00000046540	NUP210 (ENSPTRG00000014640) #32	HDAC11 (ENSPTRG00000014641) #33	FBLN2 (ENSPTRG00000014642) #34	WNT7A (ENSPTRG00000046824) #35	CHCHD4 (ENSPTRG00000014647) #36
Bonobo	MODERN SPECIES	16	GHRL (ENSPPAG00000026950)	SEC13 (ENSPPAG00000042985)	ATP2B2 (ENSPPAG00000043225)	ENSPPAG00000029625	SLC6A11 (ENSPPAG00000039217)	SLC6A1 (ENSPPAG00000042842)	HRH1 (ENSPPAG00000023416)	ATG7 (ENSPPAG00000040386)	VGLL4 (ENSPPAG00000035709)	TAMM41 (ENSPPAG00000037692)	ENSPPAG00000040309	SYN2 (ENSPPAG00000038622) #20	TIMP4 (ENSPPAG00000036078) #21	ENSPPAG00000030837	ENSPPAG00000028973	PPARG (ENSPPAG00000029006) #22	TSEN2 (ENSPPAG00000035317) #23	MKRN2OS (ENSPPAG00000032216) #24	MKRN2 (ENSPPAG00000036523) #25	RAF1 (ENSPPAG00000035239) #26	ENSPPAG00000024005	TMEM40 (ENSPPAG00000019163) #28	ENSPPAG00000036413	CAND2 (ENSPPAG00000004317) #29	RPL32 (ENSPPAG00000008188) ##30	IQSEC1 (ENSPPAG00000036448) #31	ENSPPAG00000028546	NUP210 (ENSPPAG00000037715) #32	HDAC11 (ENSPPAG00000037567) #33	FBLN2 (ENSPPAG00000015671) #34	WNT7A (ENSPPAG00000030187) #35
Human	MODERN SPECIES	15	VHL (ENSG00000134086)	IRAK2 (ENSG00000134070)	TATDN2 (ENSG00000157014)	ENSG00000289763	GHRL (ENSG00000157017)	SEC13 (ENSG00000157020)	ATP2B2 (ENSG00000157087)	SLC6A11 (ENSG00000132164)	SLC6A1 (ENSG00000157103)	HRH1 (ENSG00000196639)	ATG7 (ENSG00000197548)	VGLL4 (ENSG00000144560)	TAMM41 (ENSG00000144559)	SYN2 (ENSG00000157152) #20	TIMP4 (ENSG00000157150) #21	PPARG (ENSG00000132170) #22	TSEN2 (ENSG00000154743) #23	MKRN2OS (ENSG00000225526) #24	MKRN2 (ENSG00000075975) #25	RAF1 (ENSG00000132155) #26	TMEM40 (ENSG00000088726) #28	CAND2 (ENSG00000144712) #29	ENSG00000289809	RPL32 (ENSG00000144713) ##30	IQSEC1 (ENSG00000144711) #31	NUP210 (ENSG00000132182) #32	HDAC11 (ENSG00000163517) #33	FBLN2 (ENSG00000163520) #34	WNT7A (ENSG00000154764) #35	CHCHD4 (ENSG00000163528) #36	TMEM43 (ENSG00000170876) #37
Gorilla	MODERN SPECIES	16	GHRL (ENSGGOG00000010154)	SEC13 (ENSGGOG00000010158)	ATP2B2 (ENSGGOG00000010167)	SLC6A11 (ENSGGOG00000000379)	SLC6A1 (ENSGGOG00000000382)	ENSGGOG00000016573 #36	HRH1 (ENSGGOG00000038168)	ATG7 (ENSGGOG00000003493)	VGLL4 (ENSGGOG00000003500)	ENSGGOG00000039682	SYN2 (ENSGGOG00000009751) #20	TIMP4 (ENSGGOG00000009761) #21	ENSGGOG00000038254	ENSGGOG00000038928	ENSGGOG00000043543	PPARG (ENSGGOG00000013117) #22	TSEN2 (ENSGGOG00000012488) #23	ENSGGOG00000041526 #24	MKRN2 (ENSGGOG00000000429) #25	RAF1 (ENSGGOG00000023025) #26	TMEM40 (ENSGGOG00000028438) #28	ENSGGOG00000021954	CAND2 (ENSGGOG00000001004) #29	RPL32 (ENSGGOG00000043568) ##30	IQSEC1 (ENSGGOG00000001008) #31	NUP210 (ENSGGOG00000015096) #32	HDAC11 (ENSGGOG00000007735) #33	FBLN2 (ENSGGOG00000011561) #34	ENSGGOG00000042871	WNT7A (ENSGGOG00000012654) #35	CHCHD4 (ENSGGOG00000024077) #36
Orangutan	MODERN SPECIES	16	BRK1 (ENSPPYG00000030112)	VHL (ENSPPYG00000034342)	IRAK2 (ENSPPYG00000013662)	TATDN2 (ENSPPYG00000013661)	GHRL (ENSPPYG00000013659)	SEC13 (ENSPPYG00000013658)	ATP2B2 (ENSPPYG00000013657)	SLC6A11 (ENSPPYG00000013656)	SLC6A1 (ENSPPYG00000013655)	HRH1 (ENSPPYG00000013653)	ATG7 (ENSPPYG00000041433)	VGLL4 (ENSPPYG00000013652)	ENSPPYG00000013651	TIMP4 (ENSPPYG00000030141) #21	SYN2 (ENSPPYG00000013649) #20	PPARG (ENSPPYG00000013648) #22	TSEN2 (ENSPPYG00000013647) #23	MKRN2OS (ENSPPYG00000039535) #24	EPHA3 (ENSPPYG00000013646)	CSNKA2IP (ENSPPYG00000034142)	C3orf38 (ENSPPYG00000013644)	ZNF654 (ENSPPYG00000013643)	CGGBP1 (ENSPPYG00000031975)	POU1F1 (ENSPPYG00000013640)	CHMP2B (ENSPPYG00000013639)	VGLL3 (ENSPPYG00000013637)	ENSPPYG00000013636	CADM2 (ENSPPYG00000013635)	GBE1 (ENSPPYG00000025891)	ENSPPYG00000037849	ROBO1 (ENSPPYG00000013634)
Gibbon	MODERN SPECIES	13	IRAK2 (ENSNLEG00000004418)	TATDN2 (ENSNLEG00000004423)	GHRL (ENSNLEG00000004451)	SEC13 (ENSNLEG00000004482)	ENSNLEG00000026798	SLC6A11 (ENSNLEG00000004525)	SLC6A1 (ENSNLEG00000026605)	ENSNLEG00000030870 #36	HRH1 (ENSNLEG00000018917)	ATG7 (ENSNLEG00000027005)	VGLL4 (ENSNLEG00000004535)	ENSNLEG00000004559	TIMP4 (ENSNLEG00000004638) #21	ENSNLEG00000004578 #20	ENSNLEG00000029797	PPARG (ENSNLEG00000004650) #22	TSEN2 (ENSNLEG00000004696) #23	MKRN2OS (ENSNLEG00000030256) #24	MKRN2 (ENSNLEG00000004711) #25	RAF1 (ENSNLEG00000004732) #26	TMEM40 (ENSNLEG00000004755) #28	CAND2 (ENSNLEG00000004774) #29	ENSNLEG00000035616 #30	ENSNLEG00000004798	IQSEC1 (ENSNLEG00000004793) #31	NUP210 (ENSNLEG00000004799) #32	HDAC11 (ENSNLEG00000004853) #33	FBLN2 (ENSNLEG00000004881) #34	ENSNLEG00000004941 #35	CHCHD4 (ENSNLEG00000029809) #36	TMEM43 (ENSNLEG00000004956) #37
Platyrrhini	ANCESTRAL SPECIES	18	ENSGT00940000159835	ENSGT00940000155616.c.a	ENSGT00390000004064	ENSGT00940000153393.B.u.a	ENSGT00910000147252	ENSGT00940000153393.B.v	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00940000160690	ENSGT00390000017509.e	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00390000017530 #28	ENSGT00390000017740.a.b #29	ENSGT00940000158890.q	ENSGT00940000153973.c.a.b.a.b #30	ENSGT00940000156915 #31	ENSGT00390000009491.d #32	ENSGT00940000156308 #33	ENSGT00940000156047 #34	ENSGT00940000158523 #35	ENSGT00390000013132.p #36	ENSGT00390000009671 #37
Cebidae	ANCESTRAL SPECIES	14	ENSGT00940000159835	ENSGT00940000155616.c.a	ENSGT00390000004064	ENSGT00940000153393.B.u.a	ENSGT00910000147252	ENSGT00940000153393.B.v	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00940000160690	ENSGT00390000017509.e	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00390000017530 #28	ENSGT00390000017740.a.b #29	ENSGT00940000158890.q	ENSGT00940000153973.c.a.b.b ##30	ENSGT00940000156915 #31	ENSGT00390000009491.d #32	ENSGT00940000156308 #33	ENSGT00940000156047 #34	ENSGT00940000158523 #35	ENSGT00390000013132.p #36	ENSGT00390000009671 #37
Cebidae_a	ANCESTRAL SPECIES	47	ENSGT00940000159835	ENSGT00940000155616.c.a	ENSGT00390000004064	ENSGT00940000153393.B.u.a	ENSGT00910000147252	ENSGT00940000153393.B.v	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00940000160690	ENSGT00390000017509.e	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00390000017530 #28	ENSGT00390000017740.a.b #29	ENSGT00940000153973.c.a.b.b ##30	ENSGT00940000156915 #31	ENSGT00390000009491.d #32	ENSGT00940000156308 #33	ENSGT00940000156047 #34	ENSGT00940000158523 #35	ENSGT00390000013132.p #36	ENSGT00390000009671 #37	ENSGT00390000005194
Bolivian squirrel monkey	MODERN SPECIES	62	VHL (ENSSBOG00000027433)	IRAK2 (ENSSBOG00000023357)	ENSSBOG00000025922	GHRL (ENSSBOG00000005768)	ENSSBOG00000023709	ENSSBOG00000020409	ATP2B2 (ENSSBOG00000020057)	SLC6A11 (ENSSBOG00000029132)	SLC6A1 (ENSSBOG00000022090)	HRH1 (ENSSBOG00000015886)	ATG7 (ENSSBOG00000024304)	VGLL4 (ENSSBOG00000026167)	TAMM41 (ENSSBOG00000034374)	TIMP4 (ENSSBOG00000032293) #21	ENSSBOG00000030292 #20	PPARG (ENSSBOG00000005712) #22	TSEN2 (ENSSBOG00000035499) #23	MKRN2OS (ENSSBOG00000033896) #24	MKRN2 (ENSSBOG00000034434) #25	RAF1 (ENSSBOG00000015492) #26	ACAP2 (ENSSBOG00000029437)	XXYLT1 (ENSSBOG00000034641)	FAM43A (ENSSBOG00000018424)	LSG1 (ENSSBOG00000034938)	TMEM44 (ENSSBOG00000020794)	ATP13A3 (ENSSBOG00000005544)	LRRC15 (ENSSBOG00000031469)	CPN2 (ENSSBOG00000014283)	ENSSBOG00000033814	HES1 (ENSSBOG00000028215)	OPA1 (ENSSBOG00000021973)
Capuchin	MODERN SPECIES	281	FANCD2OS (ENSCCAG00000014976)	BRK1 (ENSCCAG00000022111)	VHL (ENSCCAG00000031654)	IRAK2 (ENSCCAG00000025730)	TATDN2 (ENSCCAG00000024974)	GHRL (ENSCCAG00000022227)	SEC13 (ENSCCAG00000026715)	ATP2B2 (ENSCCAG00000032907)	SLC6A11 (ENSCCAG00000030058)	SLC6A1 (ENSCCAG00000026677)	ATG7 (ENSCCAG00000035255)	VGLL4 (ENSCCAG00000032615)	TAMM41 (ENSCCAG00000025773)	TIMP4 (ENSCCAG00000035892) #21	SYN2 (ENSCCAG00000034848) #20	PPARG (ENSCCAG00000027364) #22	TSEN2 (ENSCCAG00000037851) #23	MKRN2OS (ENSCCAG00000031553) #24	ENSCCAG00000022711	MKRN2 (ENSCCAG00000019802) #25	RAF1 (ENSCCAG00000023070) #26	TMEM40 (ENSCCAG00000020743) #28	CAND2 (ENSCCAG00000032849) #29	RPL32 (ENSCCAG00000025373) ##30	IQSEC1 (ENSCCAG00000024388) #31
Marmoset	MODERN SPECIES	6	ENSCJAG00000056863	GHRL (ENSCJAG00000016424)	SEC13 (ENSCJAG00000016439)	ATP2B2 (ENSCJAG00000016455)	SLC6A11 (ENSCJAG00000016541)	SLC6A1 (ENSCJAG00000016551)	ENSCJAG00000072589	ENSCJAG00000070697	ENSCJAG00000084863	HRH1 (ENSCJAG00000043961)	ATG7 (ENSCJAG00000016583)	ENSCJAG00000058577	VGLL4 (ENSCJAG00000016643)	SYN2 (ENSCJAG00000016647) #20	TIMP4 (ENSCJAG00000038791) #21	PPARG (ENSCJAG00000016687) #22	ENSCJAG00000086839	ENSCJAG00000075859	TSEN2 (ENSCJAG00000080511) #23	MKRN2OS (ENSCJAG00000040602) #24	ENSCJAG00000016733 #25	RAF1 (ENSCJAG00000016737) #26	TMEM40 (ENSCJAG00000016751) #28	CAND2 (ENSCJAG00000016770) #29	ENSCJAG00000061647	IQSEC1 (ENSCJAG00000016781) #31	NUP210 (ENSCJAG00000016795) #32	HDAC11 (ENSCJAG00000016844) #33	FBLN2 (ENSCJAG00000016873) #34	WNT7A (ENSCJAG00000040771) #35	TMEM43 (ENSCJAG00000016924) #37
Mas night monkey	MODERN SPECIES	321	FANCD2 (ENSANAG00000037438)	EMC3 (ENSANAG00000029316)	PRRT3 (ENSANAG00000028211)	CRELD1 (ENSANAG00000026557)	ENSANAG00000021183	IL17RE (ENSANAG00000022892)	CIDEC (ENSANAG00000024285)	ENSANAG00000019292	HRH1 (ENSANAG00000031051)	ENSANAG00000032758	ENSANAG00000012369	VGLL4 (ENSANAG00000038129)	TAMM41 (ENSANAG00000037740)	SYN2 (ENSANAG00000021892) #20	TIMP4 (ENSANAG00000032042) #21	PPARG (ENSANAG00000020115) #22	TSEN2 (ENSANAG00000026891) #23	MKRN2OS (ENSANAG00000026143) #24	MKRN2 (ENSANAG00000022646) #25	RAF1 (ENSANAG00000031934) #26	TMEM40 (ENSANAG00000036821) #28	CAND2 (ENSANAG00000020366) #29	ENSANAG00000020589 #30	IQSEC1 (ENSANAG00000028368) #31	NUP210 (ENSANAG00000036448) #32	HDAC11 (ENSANAG00000035737) #33	FBLN2 (ENSANAG00000027135) #34	WNT7A (ENSANAG00000033071) #35	CHCHD4 (ENSANAG00000034814) #36	TMEM43 (ENSANAG00000036418) #37	XPC (ENSANAG00000021069)
Tarsier	MODERN SPECIES	5029														PM20D2 (ENSTSYG00000027051)	GABRR1 (ENSTSYG00000033942)	PPARG (ENSTSYG00000006950) #22	TSEN2 (ENSTSYG00000010816) #23	MKRN2OS (ENSTSYG00000029616) #24	ENSTSYG00000030920	MKRN2 (ENSTSYG00000007429) #25	RAF1 (ENSTSYG00000007438) #26
Strepsirrhini	ANCESTRAL SPECIES	1	ENSGT00390000011082	ENSGT00390000014353	ENSGT00940000159835	ENSGT00940000155616.c.a	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00390000017530 #28	ENSGT00390000017740.a.b #29	ENSGT00940000153973.c.a.a ##30	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951
Lemuriformes	ANCESTRAL SPECIES	76	ENSGT00940000156047 #34	ENSGT00940000156308 #33	ENSGT00390000009491.d #32	ENSGT00940000156915 #31	ENSGT00940000157312	ENSGT00910000147252	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00390000017530 #28	ENSGT00390000017740.a.b #29	ENSGT00940000153973.c.a.a ##30	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a
Mouse lemur	MODERN SPECIES	15	HDAC11 (ENSMICG00000014219) #33	NUP210 (ENSMICG00000014165) #32	ENSMICG00000007742	IQSEC1 (ENSMICG00000002633) #31	ACAD9 (ENSMICG00000007418)	ATP2B2 (ENSMICG00000002406)	SLC6A11 (ENSMICG00000033698)	SLC6A1 (ENSMICG00000003055)	ATG7 (ENSMICG00000016547)	ENSMICG00000035458	VGLL4 (ENSMICG00000016559)	TAMM41 (ENSMICG00000016586)	ENSMICG00000012731	SYN2 (ENSMICG00000003565) #20	TIMP4 (ENSMICG00000045817) #21	PPARG (ENSMICG00000016663) #22	TSEN2 (ENSMICG00000016672) #23	MKRN2OS (ENSMICG00000038087) #24	MKRN2 (ENSMICG00000012164) #25	RAF1 (ENSMICG00000012172) #26	ENSMICG00000033639	TMEM40 (ENSMICG00000003715) #28	CAND2 (ENSMICG00000041434) #29	ENSMICG00000034607 ##30	EFCAB12 (ENSMICG00000008010)	MBD4 (ENSMICG00000008022)	IFT122 (ENSMICG00000008033)	RHO (ENSMICG00000047910)	H1-8 (ENSMICG00000030377)	PLXND1 (ENSMICG00000008079)	ENSMICG00000028823
Lemuriformes_a	ANCESTRAL SPECIES	162			ENSGT00390000009491.d #32	ENSGT00940000156915 #31	ENSGT00940000157312	ENSGT00910000147252	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00390000017530 #28	ENSGT00390000017740.a.b #29	ENSGT00940000153973.c.a.a ##30	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a
Greater bamboo lemur	MODERN SPECIES	130								SLC6A11 (ENSPSMG00000025382)	SLC6A1 (ENSPSMG00000025445)	HRH1 (ENSPSMG00000000102)	ATG7 (ENSPSMG00000000247)	VGLL4 (ENSPSMG00000000320)	TAMM41 (ENSPSMG00000000346)	SYN2 (ENSPSMG00000000398) #20	TIMP4 (ENSPSMG00000000419) #21	PPARG (ENSPSMG00000000463) #22	TSEN2 (ENSPSMG00000000537) #23	MKRN2OS (ENSPSMG00000000584) #24	MKRN2 (ENSPSMG00000000636) #25	RAF1 (ENSPSMG00000000725) #26	TMEM40 (ENSPSMG00000000837) #28	ENSPSMG00000000888	CAND2 (ENSPSMG00000000926) #29	ENSPSMG00000000953 #30	EFCAB12 (ENSPSMG00000000969)	MBD4 (ENSPSMG00000001016)	IFT122 (ENSPSMG00000001543)	RHO (ENSPSMG00000002457)	H1-8 (ENSPSMG00000002466)	ENSPSMG00000002470
Coquerels sifaka	MODERN SPECIES	614			NUP210 (ENSPCOG00000026371) #32	ENSPCOG00000026952	IQSEC1 (ENSPCOG00000022781) #31	ACAD9 (ENSPCOG00000028509)	ENSPCOG00000027035	ATP2B2 (ENSPCOG00000022973)	SLC6A11 (ENSPCOG00000012550)	SLC6A1 (ENSPCOG00000027376)	ATG7 (ENSPCOG00000021597)	VGLL4 (ENSPCOG00000016845)	TAMM41 (ENSPCOG00000021554)	TIMP4 (ENSPCOG00000025232) #21	SYN2 (ENSPCOG00000020181) #20	PPARG (ENSPCOG00000017510) #22	TSEN2 (ENSPCOG00000019328) #23	MKRN2OS (ENSPCOG00000027519) #24	MKRN2 (ENSPCOG00000013481) #25	RAF1 (ENSPCOG00000013436) #26	ENSPCOG00000024646	TMEM40 (ENSPCOG00000027785) #28	CAND2 (ENSPCOG00000020368) #29	ENSPCOG00000026378 ##30	EFCAB12 (ENSPCOG00000020532)	ENSPCOG00000018583	IFT122 (ENSPCOG00000023934)	RHO (ENSPCOG00000024236)	H1-8 (ENSPCOG00000024479)	PLXND1 (ENSPCOG00000027312)
Bushbaby	MODERN SPECIES	216								HRH1 (ENSOGAG00000016172)	ATG7 (ENSOGAG00000016175)	VGLL4 (ENSOGAG00000016184)	TAMM41 (ENSOGAG00000030657)	ENSOGAG00000031076	ENSOGAG00000006595	TIMP4 (ENSOGAG00000016704) #21	SYN2 (ENSOGAG00000016700) #20	PPARG (ENSOGAG00000002971) #22	ENSOGAG00000002976 #23	MKRN2OS (ENSOGAG00000031425) #24	MKRN2 (ENSOGAG00000003255) #25	RAF1 (ENSOGAG00000003256) #26	TMEM40 (ENSOGAG00000003261) #28	CAND2 (ENSOGAG00000028928) #29	RPL32 (ENSOGAG00000028498) ##30	ENSOGAG00000010234	MBD4 (ENSOGAG00000010236)	IFT122 (ENSOGAG00000010245)	RHO (ENSOGAG00000010259)	PLXND1 (ENSOGAG00000010266)	ENSOGAG00000032612	TMCC1 (ENSOGAG00000010283)	ENSOGAG00000031381
Euarchontoglires_A	ANCESTRAL SPECIES	2	ENSGT00390000014353	ENSGT00940000159835	ENSGT01090000263461	ENSGT00940000155616.c.a	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00390000017530 #28	ENSGT00390000017740.a.b #29	ENSGT00940000153973.c.a.a ##30	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951
Tree shrew	MODERN SPECIES	1420																PPARG (ENSTBEG00000011278) #22
Glires	ANCESTRAL SPECIES	2	ENSGT00390000014353	ENSGT00940000159835	ENSGT01090000263461	ENSGT00940000155616.c.a	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00390000017530 #28	ENSGT00390000017740.a.b #29	ENSGT00940000153973.c.a.a ##30	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951
Lagomorpha	ANCESTRAL SPECIES	105									ENSGT00940000157569	ENSGT00940000156027	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00390000017530 #28	ENSGT00390000017740.a.b #29	ENSGT00940000153973.c.a.b.b ##30	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000175447	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951
Rabbit	MODERN SPECIES	20	EXOSC7 (ENSOCUG00000000939)	ENSOCUG00000036909	CDCP1 (ENSOCUG00000006910)	LARS2 (ENSOCUG00000001964)	ENSOCUG00000024922	LIMD1 (ENSOCUG00000001984)	SACM1L (ENSOCUG00000026080)	SLC6A20 (ENSOCUG00000004216)	LZTFL1 (ENSOCUG00000010140)	SLC6A11 (ENSOCUG00000001627)	ENSOCUG00000025657	ATG7 (ENSOCUG00000001908)	VGLL4 (ENSOCUG00000001911)	TIMP4 (ENSOCUG00000015952) #21	ENSOCUG00000015932 #20	PPARG (ENSOCUG00000013194) #22	TSEN2 (ENSOCUG00000013203) #23	MKRN2OS (ENSOCUG00000033126) #24	MKRN2 (ENSOCUG00000014171) #25	RAF1 (ENSOCUG00000014175) #26	ENSOCUG00000031173 #28	CAND2 (ENSOCUG00000009266) #29	ENSOCUG00000023407 ##30	ENSOCUG00000012999	MBD4 (ENSOCUG00000013006)	IFT122 (ENSOCUG00000013015)	RHO (ENSOCUG00000013036)	ENSOCUG00000029379	PLXND1 (ENSOCUG00000013049)	TMCC1 (ENSOCUG00000013071)	TRH (ENSOCUG00000006337)
Pika	MODERN SPECIES	1896													TAMM41 (ENSOPRG00000003357)	SYN2 (ENSOPRG00000003375) #20	TIMP4 (ENSOPRG00000003424) #21	PPARG (ENSOPRG00000003439) #22	TSEN2 (ENSOPRG00000003456) #23	MKRN2 (ENSOPRG00000003501) #25	RAF1 (ENSOPRG00000003522) #26	ENSOPRG00000003562 #29
Rodentia	ANCESTRAL SPECIES	2	ENSGT00390000014353	ENSGT00940000159835	ENSGT01090000263461	ENSGT00940000155616.c.a	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00390000017530 #28	ENSGT00390000017740.a.b #29	ENSGT00940000153973.c.a.a ##30	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951
Rodentia_A	ANCESTRAL SPECIES	27	ENSGT00390000011082	ENSGT00390000014353	ENSGT00940000159835	ENSGT00940000155616.c.a	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00390000017530 #28	ENSGT00390000017740.a.b #29	ENSGT00940000153973.c.a.a ##30	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951
Hystricomorpha	ANCESTRAL SPECIES	80								ENSGT00940000157569	ENSGT00940000156027	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #23
Naked mole-rat female	MODERN SPECIES	27	RSU1 (ENSHGLG00000007044)	C1QL3 (ENSHGLG00000043979)	PTER (ENSHGLG00000038711)	MINDY3 (ENSHGLG00000009019)	ENSHGLG00000005190	ENSHGLG00000034057	ENSHGLG00000033153	ENSHGLG00000032877	ENSHGLG00000047988	ENSHGLG00000006325 #35	FBLN2 (ENSHGLG00000007070) #34	HDAC11 (ENSHGLG00000007401) #33	ENSHGLG00000008376 #32	ENSHGLG00000000808 #20	ENSHGLG00000049460 #21	PPARG (ENSHGLG00000000775) #22	ENSHGLG00000000740 #23	ENSHGLG00000041351	ENSHGLG00000000350	ENSHGLG00000045274	HRH1 (ENSHGLG00000044045)	ENSHGLG00000002369	ENSHGLG00000000122	ENSHGLG00000000094	ENSHGLG00000037886	DNAJB8 (ENSHGLG00000046802)	GATA2 (ENSHGLG00000000985)	ENSHGLG00000000920	ENSHGLG00000039046	ENSHGLG00000019586	ENSHGLG00000032284
Hystricomorpha_a	ANCESTRAL SPECIES	88								ENSGT00940000157569	ENSGT00940000156027	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #23
Guinea pig	MODERN SPECIES	123							ENSCPOG00000039667	SLC6A11 (ENSCPOG00000007809)	SLC6A1 (ENSCPOG00000025521)	HRH1 (ENSCPOG00000002743)	ATG7 (ENSCPOG00000002744)	VGLL4 (ENSCPOG00000007715)	TAMM41 (ENSCPOG00000009163)	TIMP4 (ENSCPOG00000021191) #21	SYN2 (ENSCPOG00000008208) #20	PPARG (ENSCPOG00000002043) #22	ENSCPOG00000007932 #23	AKR1E2 (ENSCPOG00000037608)	ENSCPOG00000007548	ENSCPOG00000003089	ENSCPOG00000000371	ENSCPOG00000025134	ENSCPOG00000038290	ENSCPOG00000037816	FER (ENSCPOG00000004104)
Hystricomorpha_b	ANCESTRAL SPECIES	129								ENSGT00940000157569	ENSGT00940000156027	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #23
Degu	MODERN SPECIES	274	ENSODEG00000002891 ##30	CAND2 (ENSODEG00000002821) #29	TMEM40 (ENSODEG00000002755) #28	RAF1 (ENSODEG00000002734) #26	MKRN2 (ENSODEG00000002702) #25	MKRN2OS (ENSODEG00000002688) #24	ENSODEG00000002676	SLC6A11 (ENSODEG00000002665)	SLC6A1 (ENSODEG00000002644)	ATG7 (ENSODEG00000002299)	ENSODEG00000002124	ENSODEG00000018794	TAMM41 (ENSODEG00000002076)	TIMP4 (ENSODEG00000002023) #21	ENSODEG00000001988 #20	PPARG (ENSODEG00000002659) #22	TSEN2 (ENSODEG00000002629) #23	ENSODEG00000002503	HMCES (ENSODEG00000002476)	ENSODEG00000018801	ENSODEG00000002441	ENSODEG00000002418	ISY1 (ENSODEG00000002067)	ENSODEG00000001984	ENSODEG00000001903	ENSODEG00000001865
Long-tailed chinchilla	MODERN SPECIES	136	RAB43 (ENSCLAG00000009081)	ISY1 (ENSCLAG00000007518)	CNBP (ENSCLAG00000009193)	COPG1 (ENSCLAG00000008392)	HMCES (ENSCLAG00000007708)	H1-10 (ENSCLAG00000008312)	ENSCLAG00000009239	SLC6A11 (ENSCLAG00000005159)	SLC6A1 (ENSCLAG00000004934)	HRH1 (ENSCLAG00000017680)	ATG7 (ENSCLAG00000012476)	VGLL4 (ENSCLAG00000011019)	TAMM41 (ENSCLAG00000013323)	ENSCLAG00000005221 #20	TIMP4 (ENSCLAG00000005949) #21	PPARG (ENSCLAG00000014746) #22	TSEN2 (ENSCLAG00000011090) #23	ENSCLAG00000006333	RPN1 (ENSCLAG00000016036)	GATA2 (ENSCLAG00000014980)	DNAJB8 (ENSCLAG00000006709)	EEFSEC (ENSCLAG00000006973)	RUVBL1 (ENSCLAG00000008051)	SEC61A1 (ENSCLAG00000004789)	KBTBD12 (ENSCLAG00000006214)	MGLL (ENSCLAG00000010527)	ABTB1 (ENSCLAG00000010398)	PODXL2 (ENSCLAG00000011183)	MCM2 (ENSCLAG00000013539)	TPRA1 (ENSCLAG00000015612)	PLXNA1 (ENSCLAG00000007472)
Sciuridae	ANCESTRAL SPECIES	41	ENSGT00390000011082	ENSGT00390000014353	ENSGT00940000159835	ENSGT00940000155616.c.a	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00390000017530 #28	ENSGT00390000017740.a.b #29	ENSGT00940000153973.c.a.a ##30	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951
Marmotini	ANCESTRAL SPECIES	49	ENSGT00390000014353	ENSGT00940000159835	ENSGT00940000155616.c.a	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00960000190360	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00390000017530 #28	ENSGT00390000017740.a.b #29	ENSGT00940000153973.c.a.a ##30	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951
Marmotini_b	ANCESTRAL SPECIES	62	ENSGT00390000014353	ENSGT00940000159835	ENSGT00940000155616.c.a	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00960000190360	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00390000017530 #28	ENSGT00390000017740.a.b #29	ENSGT00940000153973.c.a.a ##30	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951
Arctic ground squirrel	MODERN SPECIES	23	BRK1 (ENSUPAG00010022984)	IRAK2 (ENSUPAG00010022988)	TATDN2 (ENSUPAG00010022994)	GHRL (ENSUPAG00010022997)	SEC13 (ENSUPAG00010022998)	ATP2B2 (ENSUPAG00010022999)	SLC6A11 (ENSUPAG00010023004)	SLC6A1 (ENSUPAG00010023006)	ENSUPAG00010023009	HRH1 (ENSUPAG00010023010)	ATG7 (ENSUPAG00010023011)	VGLL4 (ENSUPAG00010023024)	ENSUPAG00010023027	SYN2 (ENSUPAG00010023028) #20	TIMP4 (ENSUPAG00010023029) #21	PPARG (ENSUPAG00010023031) #22	TSEN2 (ENSUPAG00010023034) #23	MKRN2OS (ENSUPAG00010023035) #24	MKRN2 (ENSUPAG00010023036) #25	RAF1 (ENSUPAG00010023038) #26	TMEM40 (ENSUPAG00010023040) #28	CAND2 (ENSUPAG00010023044) #29	ENSUPAG00010023046 ##30	EFCAB12 (ENSUPAG00010023049)	ENSUPAG00010023052	ENSUPAG00010023053	IFT122 (ENSUPAG00010023058)	RHO (ENSUPAG00010023066)	H1-8 (ENSUPAG00010023069)	PLXND1 (ENSUPAG00010000023)	TMCC1 (ENSUPAG00010000491)
Squirrel	MODERN SPECIES	202	BRK1 (ENSSTOG00000013945)	ENSSTOG00000013959	IRAK2 (ENSSTOG00000013972)	TATDN2 (ENSSTOG00000013999)	GHRL (ENSSTOG00000022095)	SEC13 (ENSSTOG00000014017)	ATP2B2 (ENSSTOG00000014026)	SLC6A11 (ENSSTOG00000028999)	SLC6A1 (ENSSTOG00000007598)	HRH1 (ENSSTOG00000015286)	ATG7 (ENSSTOG00000015288)	VGLL4 (ENSSTOG00000025247)	ENSSTOG00000028589	TIMP4 (ENSSTOG00000034531) #21	SYN2 (ENSSTOG00000011519) #20	PPARG (ENSSTOG00000012778) #22	TSEN2 (ENSSTOG00000000538) #23	MKRN2OS (ENSSTOG00000031428) #24	MKRN2 (ENSSTOG00000010520) #25	RAF1 (ENSSTOG00000025146) #26	CAND2 (ENSSTOG00000023136) #29	ENSSTOG00000026505 ##30	MBD4 (ENSSTOG00000020663)	IFT122 (ENSSTOG00000004353)	RHO (ENSSTOG00000028352)	PLXND1 (ENSSTOG00000024621)	TMCC1 (ENSSTOG00000019869)	TRH (ENSSTOG00000026247)	RBSN (ENSSTOG00000022986)	MRPS25 (ENSSTOG00000030962)	NR2C2 (ENSSTOG00000005250)
Alpin marmot	MODERN SPECIES	40	IRAK2 (ENSMMMG00000009442)	ENSMMMG00000009508	GHRL (ENSMMMG00000009514)	SEC13 (ENSMMMG00000009563)	ATP2B2 (ENSMMMG00000009587)	SLC6A11 (ENSMMMG00000009836)	SLC6A1 (ENSMMMG00000009856)	ENSMMMG00000009895	HRH1 (ENSMMMG00000009921)	ENSMMMG00000009925	ATG7 (ENSMMMG00000009966)	VGLL4 (ENSMMMG00000010304)	TAMM41 (ENSMMMG00000010322)	SYN2 (ENSMMMG00000010440) #20	ENSMMMG00000010687 #21	PPARG (ENSMMMG00000010840) #22	ENSMMMG00000010899 #23	ENSMMMG00000010907 #23	MKRN2OS (ENSMMMG00000010915) #24	MKRN2 (ENSMMMG00000010927) #25	ENSMMMG00000010950	RAF1 (ENSMMMG00000010957) #26	ENSMMMG00000010993 #29	ENSMMMG00000010997 ##30	EFCAB12 (ENSMMMG00000011023)	MBD4 (ENSMMMG00000011043)	IFT122 (ENSMMMG00000011068)	RHO (ENSMMMG00000011272)	ENSMMMG00000011299	ENSMMMG00000011319	TMCC1 (ENSMMMG00000011365)
Eurasian red squirrel	MODERN SPECIES	10	IRAK2 (ENSSVLG00005024086)	ENSSVLG00005024064	TATDN2 (ENSSVLG00005024031)	GHRL (ENSSVLG00005023970)	SEC13 (ENSSVLG00005023877)	ATP2B2 (ENSSVLG00005022802)	SLC6A11 (ENSSVLG00005022396)	SLC6A1 (ENSSVLG00005021844)	HRH1 (ENSSVLG00005021749)	ATG7 (ENSSVLG00005021683)	VGLL4 (ENSSVLG00005021566)	ENSSVLG00005021494	TAMM41 (ENSSVLG00005021448)	TIMP4 (ENSSVLG00005021374) #21	SYN2 (ENSSVLG00005021130) #20	PPARG (ENSSVLG00005020780) #22	TSEN2 (ENSSVLG00005020543) #23	MKRN2OS (ENSSVLG00005020454) #24	MKRN2 (ENSSVLG00005020340) #25	ENSSVLG00005019978 #26	TMEM40 (ENSSVLG00005019760) #28	CAND2 (ENSSVLG00005019570) #29	ENSSVLG00005019450 ##30	EFCAB12 (ENSSVLG00005019404)	MBD4 (ENSSVLG00005019308)	IFT122 (ENSSVLG00005018941)	RHO (ENSSVLG00005018827)	ENSSVLG00005018771	PLXND1 (ENSSVLG00005018384)	TMCC1 (ENSSVLG00005018250)	ENSSVLG00005018231
Rodentia_B	ANCESTRAL SPECIES	26	ENSGT00390000014353	ENSGT00940000159835	ENSGT01090000263461	ENSGT00940000155616.c.a	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00390000017530 #28	ENSGT00390000017740.a.b #29	ENSGT00940000153973.c.a.a ##30	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951
Kangaroo rat	MODERN SPECIES	331	Fancd2os (ENSDORG00000001146)	ENSDORG00000024837	Vhl (ENSDORG00000015401)	Irak2 (ENSDORG00000012277)	Tatdn2 (ENSDORG00000012279)	Ghrl (ENSDORG00000012281)	Sec13 (ENSDORG00000015327)	Atp2b2 (ENSDORG00000015330)	Slc6a11 (ENSDORG00000016390)	Slc6a1 (ENSDORG00000016380)	Atg7 (ENSDORG00000004380)	Vgll4 (ENSDORG00000004378)	Tamm41 (ENSDORG00000002091)	Timp4 (ENSDORG00000009509) #21	ENSDORG00000009507 #20	Pparg (ENSDORG00000003445) #22	Tsen2 (ENSDORG00000003395) #23	Mkrn2os (ENSDORG00000028573) #24	Mkrn2 (ENSDORG00000015621) #25	Raf1 (ENSDORG00000015622) #26	ENSDORG00000023579 #28	Cand2 (ENSDORG00000008424) #29	Rpl32 (ENSDORG00000008426) ##30	ENSDORG00000000902	Ift122 (ENSDORG00000000906)	Rho (ENSDORG00000000911)	ENSDORG00000026967	Plxnd1 (ENSDORG00000000912)	Tmcc1 (ENSDORG00000026595)	Rbsn (ENSDORG00000009815)	Mrps25 (ENSDORG00000026838)
Myomorpha	ANCESTRAL SPECIES	36	ENSGT00390000014353	ENSGT00940000159835	ENSGT01090000263461	ENSGT00940000155616.c.a	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00390000017530 #28	ENSGT00390000017740.a.b #29	ENSGT00940000153973.c.a.a ##30	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951
Lesser Egyptian jerboa	MODERN SPECIES	45	Erap1 (ENSJJAG00000010373)	Lnpep (ENSJJAG00000012174)	Lix1 (ENSJJAG00000023046)	Ghrl (ENSJJAG00000020141)	Sec13 (ENSJJAG00000023600)	Atp2b2 (ENSJJAG00000009628)	Slc6a11 (ENSJJAG00000008690)	Slc6a1 (ENSJJAG00000013717)	Hrh1 (ENSJJAG00000012905)	Atg7 (ENSJJAG00000021264)	Vgll4 (ENSJJAG00000017532)	Tamm41 (ENSJJAG00000015841)	Timp4 (ENSJJAG00000015654) #21	ENSJJAG00000015072 #20	ENSJJAG00000012036	Pparg (ENSJJAG00000023734) #22	ENSJJAG00000002861 #23	ENSJJAG00000015646	Mkrn2os (ENSJJAG00000022652) #24	Mkrn2 (ENSJJAG00000019765) #25	ENSJJAG00000016961 #26	Tmem40 (ENSJJAG00000009444) #28	Cand2 (ENSJJAG00000018247) #29	ENSJJAG00000021233 ##30	ENSJJAG00000016695	Ift122 (ENSJJAG00000020288)	Rho (ENSJJAG00000022285)	ENSJJAG00000014828	Plxnd1 (ENSJJAG00000014069)	ENSJJAG00000020659	Tmcc1 (ENSJJAG00000019999)
Muroidea	ANCESTRAL SPECIES	37	ENSGT00390000014353	ENSGT00940000159835	ENSGT01090000263461	ENSGT00940000155616.c.a	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00390000017530 #28	ENSGT00390000017740.a.b #29	ENSGT00940000153973.c.a.a ##30	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951
Upper Galilee mountains blind mole rat	MODERN SPECIES	1707	Brk1 (ENSNGAG00000024317)	Vhl (ENSNGAG00000000823)	Irak2 (ENSNGAG00000011088)	Tatdn2 (ENSNGAG00000011523)	Ghrl (ENSNGAG00000022045)	Sec13 (ENSNGAG00000003425)	Atp2b2 (ENSNGAG00000015473)	Slc6a11 (ENSNGAG00000013842)	Slc6a1 (ENSNGAG00000015663)	Hrh1 (ENSNGAG00000021456)	ENSNGAG00000003030	Vgll4 (ENSNGAG00000013946)	Tamm41 (ENSNGAG00000013592)	Syn2 (ENSNGAG00000022266) #20	Timp4 (ENSNGAG00000021746) #21	Pparg (ENSNGAG00000014683) #22	ENSNGAG00000013561 #23	Mkrn2os (ENSNGAG00000019573) #24	Mkrn2 (ENSNGAG00000012579) #25	Raf1 (ENSNGAG00000019548) #26	Tmem40 (ENSNGAG00000021850) #28	Cand2 (ENSNGAG00000024002) #29	ENSNGAG00000024001 ##30	Efcab12 (ENSNGAG00000008314)	ENSNGAG00000017381	Ift122 (ENSNGAG00000022462)	Rho (ENSNGAG00000020656)	H1f8 (ENSNGAG00000023630)	Plxnd1 (ENSNGAG00000020476)	Tmcc1 (ENSNGAG00000010573)	Trh (ENSNGAG00000022332)
Muroidea_A	ANCESTRAL SPECIES	4	ENSGT00390000014353	ENSGT00940000159835	ENSGT01090000263461	ENSGT00940000155616.c.a	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00390000017530 #28	ENSGT00390000017740.a.b #29	ENSGT00940000153973.c.a.a ##30	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00940000153997.b.a.a
Murinae	ANCESTRAL SPECIES	4	ENSGT00390000014353	ENSGT00940000159835	ENSGT01090000263461	ENSGT00940000155616.c.a	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00390000017530 #28	ENSGT00390000017740.a.b #29	ENSGT00940000153973.c.a.a ##30	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00940000153997.b.a.a
Mus	ANCESTRAL SPECIES	12	ENSGT00390000014353	ENSGT00940000159835	ENSGT01090000263461	ENSGT00940000155616.c.a	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00390000017530 #28	ENSGT00390000017740.a.b #29	ENSGT00940000153973.c.a.a ##30	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00940000153997.b.a.a
Mus_A	ANCESTRAL SPECIES	7	ENSGT00390000014353	ENSGT00940000159835	ENSGT01090000263461	ENSGT00940000155616.c.a	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00390000017530 #28	ENSGT00390000017740.a.b #29	ENSGT00940000153973.c.a.a ##30	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00940000153997.b.a.a
Mus_B	ANCESTRAL SPECIES	15	ENSGT00390000014353	ENSGT00940000159835	ENSGT01090000263461	ENSGT00940000155616.c.a	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00390000017530 #28	ENSGT00390000017740.a.b #29	ENSGT00940000153973.c.a.a ##30	ENSGT00940000153973.c.a.b.b ##30	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189
Mouse	MODERN SPECIES	15	Vhl (ENSMUSG00000033933)	Irak2 (ENSMUSG00000060477)	Tatdn2 (ENSMUSG00000056952)	ENSMUSG00000121578	Ghrl (ENSMUSG00000064177)	Sec13 (ENSMUSG00000030298)	Atp2b2 (ENSMUSG00000030302)	Slc6a11 (ENSMUSG00000030307)	Slc6a1 (ENSMUSG00000030310)	Hrh1 (ENSMUSG00000053004)	Atg7 (ENSMUSG00000030314)	Vgll4 (ENSMUSG00000030315)	Tamm41 (ENSMUSG00000030316)	Syn2 (ENSMUSG00000009394) #20	Timp4 (ENSMUSG00000030317) #21	Pparg (ENSMUSG00000000440) #22	Tsen2 (ENSMUSG00000042389) #23	Mkrn2os (ENSMUSG00000068011) #24	Mkrn2 (ENSMUSG00000000439) #25	Raf1 (ENSMUSG00000000441) #26	Tmem40 (ENSMUSG00000059900) #28	Cand2 (ENSMUSG00000030319) #29	Rpl32 (ENSMUSG00000057841) ##30	Efcab12 (ENSMUSG00000030321)	Mbd4 (ENSMUSG00000030322)	Ift122 (ENSMUSG00000030323)	Rho (ENSMUSG00000030324)	H1f8 (ENSMUSG00000042279)	Plxnd1 (ENSMUSG00000030123)	Tmcc1 (ENSMUSG00000030126)	Washc2 (ENSMUSG00000024104)
Mus_C	ANCESTRAL SPECIES	18	ENSGT00390000011082	ENSGT00390000014353	ENSGT00940000159835	ENSGT00940000155616.c.a	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00390000017530 #28	ENSGT00390000017740.a.b #29	ENSGT00940000153973.c.a.a ##30	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00940000153997.b.a.a
spretus	MODERN SPECIES	15	Vhl (MGP_SPRETEiJ_G0029764)	Irak2 (MGP_SPRETEiJ_G0029765)	Tatdn2 (MGP_SPRETEiJ_G0029766)	Ghrl (MGP_SPRETEiJ_G0029767)	Sec13 (MGP_SPRETEiJ_G0029768)	Atp2b2 (MGP_SPRETEiJ_G0029769)	Slc6a11 (MGP_SPRETEiJ_G0029770)	Slc6a1 (MGP_SPRETEiJ_G0029771)	Hrh1 (MGP_SPRETEiJ_G0029772)	Atg7 (MGP_SPRETEiJ_G0029773)	Vgll4 (MGP_SPRETEiJ_G0029774)	Tamm41 (MGP_SPRETEiJ_G0029775)	Syn2 (MGP_SPRETEiJ_G0029776) #20	MGP_SPRETEiJ_G0029777	Timp4 (MGP_SPRETEiJ_G0029778) #21	Pparg (MGP_SPRETEiJ_G0029779) #22	Tsen2 (MGP_SPRETEiJ_G0029780) #23	Mkrn2os (MGP_SPRETEiJ_G0029781) #24	Mkrn2 (MGP_SPRETEiJ_G0029782) #25	Raf1 (MGP_SPRETEiJ_G0029783) #26	Tmem40 (MGP_SPRETEiJ_G0029784) #28	Cand2 (MGP_SPRETEiJ_G0029785) #29	MGP_SPRETEiJ_G0029786 ##30	Efcab12 (MGP_SPRETEiJ_G0029787)	Mbd4 (MGP_SPRETEiJ_G0029788)	Ift122 (MGP_SPRETEiJ_G0029789)	Rho (MGP_SPRETEiJ_G0029790)	H1f8 (MGP_SPRETEiJ_G0029791)	Plxnd1 (MGP_SPRETEiJ_G0029792)	MGP_SPRETEiJ_G0029793	Washc2 (MGP_SPRETEiJ_G0029794)
Steppe mouse	MODERN SPECIES	3022									Atg7 (ENSMSIG00000031927)	ENSMSIG00000031929	ENSMSIG00000031930	ENSMSIG00000031931	Syn2 (ENSMSIG00000031932) #20	ENSMSIG00000031933	Timp4 (ENSMSIG00000031934) #21	Pparg (ENSMSIG00000031935) #22	Tsen2 (ENSMSIG00000031936) #23	Mkrn2os (ENSMSIG00000031937) #24	ENSMSIG00000031938 #25	Raf1 (ENSMSIG00000000188) #26	Tmem40 (ENSMSIG00000000359) #28	Cand2 (ENSMSIG00000000651) #29	Rpl32 (ENSMSIG00000000692) ##30	Efcab12 (ENSMSIG00000000741)	Mbd4 (ENSMSIG00000000793)	Ift122 (ENSMSIG00000000881)	Rho (ENSMSIG00000001309)	ENSMSIG00000001359	H1f8 (ENSMSIG00000001367)	ENSMSIG00000001422	Tmcc1 (ENSMSIG00000001659)
Ryukyu mouse	MODERN SPECIES	15	Vhl (MGP_CAROLIEiJ_G0028736)	Irak2 (MGP_CAROLIEiJ_G0028737)	Tatdn2 (MGP_CAROLIEiJ_G0028738)	Ghrl (MGP_CAROLIEiJ_G0028739)	Sec13 (MGP_CAROLIEiJ_G0028740)	Atp2b2 (MGP_CAROLIEiJ_G0028741)	Slc6a11 (MGP_CAROLIEiJ_G0028742)	Slc6a1 (MGP_CAROLIEiJ_G0028743)	Hrh1 (MGP_CAROLIEiJ_G0028744)	Atg7 (MGP_CAROLIEiJ_G0028745)	Vgll4 (MGP_CAROLIEiJ_G0028746)	Tamm41 (MGP_CAROLIEiJ_G0028747)	Syn2 (MGP_CAROLIEiJ_G0028748) #20	MGP_CAROLIEiJ_G0028749	Timp4 (MGP_CAROLIEiJ_G0028750) #21	Pparg (MGP_CAROLIEiJ_G0028751) #22	Tsen2 (MGP_CAROLIEiJ_G0028752) #23	Mkrn2os (MGP_CAROLIEiJ_G0028753) #24	Mkrn2 (MGP_CAROLIEiJ_G0028754) #25	Raf1 (MGP_CAROLIEiJ_G0028755) #26	MGP_CAROLIEiJ_G0028756 #28	Cand2 (MGP_CAROLIEiJ_G0028757) #29	MGP_CAROLIEiJ_G0028758 ##30	Efcab12 (MGP_CAROLIEiJ_G0028759)	Mbd4 (MGP_CAROLIEiJ_G0028760)	Ift122 (MGP_CAROLIEiJ_G0028761)	Rho (MGP_CAROLIEiJ_G0028762)	H1f8 (MGP_CAROLIEiJ_G0028763)	Plxnd1 (MGP_CAROLIEiJ_G0028764)	Tmcc1 (MGP_CAROLIEiJ_G0028765)	Washc2 (MGP_CAROLIEiJ_G0028766)
Shrew mouse	MODERN SPECIES	11	Vhl (MGP_PahariEiJ_G0022487)	Irak2 (MGP_PahariEiJ_G0022488)	Tatdn2 (MGP_PahariEiJ_G0022489)	Ghrl (MGP_PahariEiJ_G0022490)	Sec13 (MGP_PahariEiJ_G0022491)	Atp2b2 (MGP_PahariEiJ_G0022492)	Slc6a11 (MGP_PahariEiJ_G0022493)	Slc6a1 (MGP_PahariEiJ_G0022494)	Hrh1 (MGP_PahariEiJ_G0022495)	Atg7 (MGP_PahariEiJ_G0022496)	Vgll4 (MGP_PahariEiJ_G0022497)	Tamm41 (MGP_PahariEiJ_G0022498)	Syn2 (MGP_PahariEiJ_G0022499) #20	MGP_PahariEiJ_G0022500	Timp4 (MGP_PahariEiJ_G0022501) #21	Pparg (MGP_PahariEiJ_G0022502) #22	Tsen2 (MGP_PahariEiJ_G0022503) #23	Mkrn2os (MGP_PahariEiJ_G0022504) #24	Mkrn2 (MGP_PahariEiJ_G0022505) #25	Raf1 (MGP_PahariEiJ_G0022506) #26	Tmem40 (MGP_PahariEiJ_G0022507) #28	Cand2 (MGP_PahariEiJ_G0022508) #29	MGP_PahariEiJ_G0022509 ##30	Efcab12 (MGP_PahariEiJ_G0022510)	MGP_PahariEiJ_G0022511	Ift122 (MGP_PahariEiJ_G0022512)	Rho (MGP_PahariEiJ_G0022513)	H1f8 (MGP_PahariEiJ_G0022514)	Plxnd1 (MGP_PahariEiJ_G0022515)	Tmcc1 (MGP_PahariEiJ_G0022516)	Washc2 (MGP_PahariEiJ_G0022517)
Rat	MODERN SPECIES	14	Sec13 (ENSRNOG00000010628)	Atp2b2 (ENSRNOG00000030269)	Slc6a11 (ENSRNOG00000005697)	Slc6a1 (ENSRNOG00000006527)	Hrh1 (ENSRNOG00000007420)	LOC120102367 (ENSRNOG00000067090)	ENSRNOG00000069624	Atg7 (ENSRNOG00000007486)	Vgll4 (ENSRNOG00000007822)	Tamm41 (ENSRNOG00000007874)	Syn2 (ENSRNOG00000008157) #20	ENSRNOG00000067395	AC128901.1 (ENSRNOG00000028826)	ENSRNOG00000069227	Timp4 (ENSRNOG00000007955) #21	Pparg (ENSRNOG00000008839) #22	Tsen2 (ENSRNOG00000060175) #23	Mkrn2os (ENSRNOG00000070957) #24	Mkrn2 (ENSRNOG00000009176) #25	Raf1 (ENSRNOG00000010153) #26	Tmem40 (ENSRNOG00000010430) #28	Cand2 (ENSRNOG00000010473) #29	Rpl32 (ENSRNOG00000010746) ##30	Efcab12 (ENSRNOG00000026176)	Mbd4 (ENSRNOG00000010919)	Ift122 (ENSRNOG00000010952)	Rho (ENSRNOG00000011144)	H1f8 (ENSRNOG00000025251)	Plxnd1 (ENSRNOG00000025209)	AABR07061825.2 (ENSRNOG00000059964)	Tmcc1 (ENSRNOG00000011614)
Cricetidae	ANCESTRAL SPECIES	3	ENSGT00390000011082	ENSGT00390000014353	ENSGT00940000159835	ENSGT00940000155616.c.a	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00390000017530 #28	ENSGT00390000017740.a.b #29	ENSGT00940000153973.c.a.a ##30	ENSGT00940000153973.d ##30	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189
Cricetinae	ANCESTRAL SPECIES	8	ENSGT00390000011082	ENSGT00390000014353	ENSGT00940000159835	ENSGT00940000155616.c.a	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00390000017530 #28	ENSGT00390000017740.a.b #29	ENSGT00940000153973.d ##30	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00940000153997.b.a.a
Chinese hamster chok1gshd	MODERN SPECIES	144	Brk1 (ENSCGRG00001000410)	Vhl (ENSCGRG00001007732)	Irak2 (ENSCGRG00001011625)	ENSCGRG00001017251	Ghrl (ENSCGRG00001018358)	Sec13 (ENSCGRG00001019327)	Atp2b2 (ENSCGRG00001021784)	Slc6a11 (ENSCGRG00001000475)	Slc6a1 (ENSCGRG00001006244)	Hrh1 (ENSCGRG00001015773)	Atg7 (ENSCGRG00001017070)	Vgll4 (ENSCGRG00001001705)	Tamm41 (ENSCGRG00001003506)	Syn2 (ENSCGRG00001007902) #20	Timp4 (ENSCGRG00001010158) #21	Pparg (ENSCGRG00001013849) #22	Tsen2 (ENSCGRG00001017681) #23	Mkrn2os (ENSCGRG00001018483) #24	ENSCGRG00001019373 #25	Raf1 (ENSCGRG00001020096) #26	Tmem40 (ENSCGRG00001022432) #28	Cand2 (ENSCGRG00001024197) #29	ENSCGRG00001000039 ##30	Efcab12 (ENSCGRG00001000767)	Mbd4 (ENSCGRG00001003507)	Ift122 (ENSCGRG00001012761)	Rho (ENSCGRG00001018161)	H1f8 (ENSCGRG00001024504)	Plxnd1 (ENSCGRG00001007901)	Tmcc1 (ENSCGRG00001016263)	Washc2 (ENSCGRG00001019572)
Golden Hamster	MODERN SPECIES	622	ENSMAUG00000020168	ENSMAUG00000020829	Tatdn2 (ENSMAUG00000008081)	Ghrl (ENSMAUG00000021031)	Sec13 (ENSMAUG00000012999)	Atp2b2 (ENSMAUG00000009448)	Slc6a11 (ENSMAUG00000008311)	Slc6a1 (ENSMAUG00000021551)	Hrh1 (ENSMAUG00000009874)	Atg7 (ENSMAUG00000003276)	Vgll4 (ENSMAUG00000011159)	Tamm41 (ENSMAUG00000017519)	ENSMAUG00000013097	Timp4 (ENSMAUG00000018049) #21	ENSMAUG00000020153 #20	ENSMAUG00000012323 #22	ENSMAUG00000013859 #23	Mkrn2os (ENSMAUG00000010492) #24	Mkrn2 (ENSMAUG00000014200) #25	Raf1 (ENSMAUG00000015447) #26	Tmem40 (ENSMAUG00000015454) #28	Cand2 (ENSMAUG00000005693) #29	ENSMAUG00000020260	Efcab12 (ENSMAUG00000010638)	ENSMAUG00000014245	Ift122 (ENSMAUG00000005778)	Rho (ENSMAUG00000002081)	H1f8 (ENSMAUG00000011359)	Plxnd1 (ENSMAUG00000021112)	ENSMAUG00000021669	Washc2 (ENSMAUG00000020725)
Cricetidae_B	ANCESTRAL SPECIES	14	ENSGT00390000011082	ENSGT00390000014353	ENSGT00940000159835	ENSGT00940000155616.c.a	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00390000017530 #28	ENSGT00390000017740.a.b #29	ENSGT00940000153973.c.a.a ##30	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00940000153997.b.a.a
Prairie vole	MODERN SPECIES	84	Irak2 (ENSMOCG00000002120)	Tatdn2 (ENSMOCG00000015418)	Ghrl (ENSMOCG00000014220)	Sec13 (ENSMOCG00000020249)	Atp2b2 (ENSMOCG00000022399)	Slc6a11 (ENSMOCG00000010284)	Slc6a1 (ENSMOCG00000011689)	Hrh1 (ENSMOCG00000009133)	ENSMOCG00000016658	Atg7 (ENSMOCG00000009400)	Vgll4 (ENSMOCG00000012297)	Tamm41 (ENSMOCG00000020960)	Syn2 (ENSMOCG00000000368) #20	Timp4 (ENSMOCG00000013297) #21	ENSMOCG00000013854	Pparg (ENSMOCG00000017202) #22	Tsen2 (ENSMOCG00000020824) #23	Mkrn2os (ENSMOCG00000010265) #24	Mkrn2 (ENSMOCG00000015472) #25	Raf1 (ENSMOCG00000012403) #26	Tmem40 (ENSMOCG00000021932) #28	Cand2 (ENSMOCG00000012580) #29	ENSMOCG00000015206 ##30	Efcab12 (ENSMOCG00000020496)	ENSMOCG00000019929	ENSMOCG00000002466	Ift122 (ENSMOCG00000014549)	Rho (ENSMOCG00000022070)	H1f8 (ENSMOCG00000005594)	Plxnd1 (ENSMOCG00000014026)	Tmcc1 (ENSMOCG00000009713)
Northern American deer mouse	MODERN SPECIES	16	Brk1 (ENSPEMG00000027939)	Vhl (ENSPEMG00000014902)	Irak2 (ENSPEMG00000012267)	Tatdn2 (ENSPEMG00000000467)	Ghrl (ENSPEMG00000001433)	Sec13 (ENSPEMG00000009433)	Atp2b2 (ENSPEMG00000000259)	Slc6a11 (ENSPEMG00000020194)	Slc6a1 (ENSPEMG00000011702)	Hrh1 (ENSPEMG00000028414)	Atg7 (ENSPEMG00000010473)	Vgll4 (ENSPEMG00000026845)	Tamm41 (ENSPEMG00000017033)	Syn2 (ENSPEMG00000016120) #20	Timp4 (ENSPEMG00000026166) #21	Pparg (ENSPEMG00000013545) #22	Tsen2 (ENSPEMG00000013175) #23	Mkrn2os (ENSPEMG00000012076) #24	Mkrn2 (ENSPEMG00000002776) #25	Raf1 (ENSPEMG00000012728) #26	Tmem40 (ENSPEMG00000002944) #28	ENSPEMG00000029699 ##29	ENSPEMG00000012965 ##30	Efcab12 (ENSPEMG00000012553)	Mbd4 (ENSPEMG00000006226)	Ift122 (ENSPEMG00000017389)	Rho (ENSPEMG00000008463)	H1f8 (ENSPEMG00000011381)	Plxnd1 (ENSPEMG00000008271)	ENSPEMG00000024601	Tmcc1 (ENSPEMG00000000449)
Laurasiatheria	ANCESTRAL SPECIES	2	ENSGT00390000014353	ENSGT00940000159835	ENSGT00940000155616.c.a	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00910000147252	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT01030000235208	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00390000017530 #28	ENSGT00390000017740.a.b #29	ENSGT00940000153973.c.a.b.b ##30	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000175447	ENSGT00930000152979	ENSGT00940000160900
Laurasiatheria_a	ANCESTRAL SPECIES	3	ENSGT00390000014353	ENSGT00940000159835	ENSGT00940000155616.c.a	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00910000147252	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT01030000235208	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00390000017530 #28	ENSGT00390000017740.a.b #29	ENSGT00940000153973.c.a.b.b ##30	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT00930000152979	ENSGT00940000175447
Laurasiatheria_b	ANCESTRAL SPECIES	2	ENSGT00390000011082	ENSGT00390000014353	ENSGT00940000159835	ENSGT00940000155616.c.a	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT01030000235208	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00950000186178	ENSGT00390000017530 #28	ENSGT00390000017740.a.b #29	ENSGT00940000153973.c.a.b.b.d ##30	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a
Carnivora	ANCESTRAL SPECIES	6	ENSGT00390000014353	ENSGT00940000159835	ENSGT00940000155616.c.a	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000009113.a.a.q.a.a	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT01030000235208	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00950000186178	ENSGT00390000017530 #28	ENSGT00390000017740.a.b #29	ENSGT00940000153973.c.a.b.a.b #30	ENSGT00940000153973.c.a.b.b.d ##30	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900
Caniformia	ANCESTRAL SPECIES	4	ENSGT00390000014353	ENSGT00940000159835	ENSGT00940000155616.c.a	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000009113.a.a.q.a.a	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT01030000235208	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00950000186178	ENSGT00390000017530 #28	ENSGT00390000017740.a.b #29	ENSGT00940000153973.c.a.a ##30	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a
Caniformia_b	ANCESTRAL SPECIES	16	ENSGT00390000014353	ENSGT00940000159835	ENSGT00940000155616.c.a	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000009113.a.a.q.a.a	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00950000186178	ENSGT00390000017530 #28	ENSGT00390000017740.a.b #29	ENSGT00940000153973.c.a.a ##30	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189
Ursidae	ANCESTRAL SPECIES	11	ENSGT00390000011082	ENSGT00940000159835	ENSGT00940000155616.c.a	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000009113.a.a.q.a.a	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00950000186178	ENSGT00390000017530 #28	ENSGT00390000017740.a.b #29	ENSGT00940000153973.c.a.b.b.d ##30	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b.d	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189
Ursus	ANCESTRAL SPECIES	43	ENSGT00390000011082	ENSGT00940000159835	ENSGT00940000155616.c.a	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000009113.a.a.q.a.a	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00390000017530 #28	ENSGT00390000017740.a.b #29	ENSGT00940000153973.c.a.b.b.c.a ##30	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000012138.a.a.j.s.b	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b.d	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189
American black bear	MODERN SPECIES	2198																PPARG (ENSUAMG00000002110) #22	ENSUAMG00000002121 #23
Polar bear	MODERN SPECIES	210	FANCD2OS (ENSUMAG00000018653)	ENSUMAG00000018651	IRAK2 (ENSUMAG00000018643)	TATDN2 (ENSUMAG00000018632)	GHRL (ENSUMAG00000018619)	SEC13 (ENSUMAG00000018614)	ATP2B2 (ENSUMAG00000018280)	SLC6A11 (ENSUMAG00000018214)	SLC6A1 (ENSUMAG00000017999)	HRH1 (ENSUMAG00000017957)	ATG7 (ENSUMAG00000017892)	VGLL4 (ENSUMAG00000017868)	TAMM41 (ENSUMAG00000017859)	TIMP4 (ENSUMAG00000017853) #21	SYN2 (ENSUMAG00000017656) #20	PPARG (ENSUMAG00000017617) #22	TSEN2 (ENSUMAG00000017610) #23	MKRN2OS (ENSUMAG00000017608) #24	MKRN2 (ENSUMAG00000017606) #25	RAF1 (ENSUMAG00000017600) #26	TMEM40 (ENSUMAG00000017596) #28	CAND2 (ENSUMAG00000017566) #29	RPL32 (ENSUMAG00000017557) ##30	EFCAB12 (ENSUMAG00000017549)	ENSUMAG00000017544	MBD4 (ENSUMAG00000017542)	IFT122 (ENSUMAG00000017522)	RHO (ENSUMAG00000017511)	PLXND1 (ENSUMAG00000017372)	TMCC1 (ENSUMAG00000017322)	TRH (ENSUMAG00000017316)
Giant Panda	MODERN SPECIES	14	BRK1 (ENSAMEG00000016048)	ENSAMEG00000016038	IRAK2 (ENSAMEG00000016020)	TATDN2 (ENSAMEG00000016012)	GHRL (ENSAMEG00000016009)	SEC13 (ENSAMEG00000015994)	ATP2B2 (ENSAMEG00000015866)	SLC6A11 (ENSAMEG00000013958)	SLC6A1 (ENSAMEG00000028234)	HRH1 (ENSAMEG00000019211)	ATG7 (ENSAMEG00000013130)	VGLL4 (ENSAMEG00000011011)	TAMM41 (ENSAMEG00000010999)	SYN2 (ENSAMEG00000004794) #20	TIMP4 (ENSAMEG00000004836) #21	PPARG (ENSAMEG00000004774) #22	TSEN2 (ENSAMEG00000004748) #23	MKRN2OS (ENSAMEG00000004745) #24	MKRN2 (ENSAMEG00000004720) #25	RAF1 (ENSAMEG00000004650) #26	ENSAMEG00000025362	TMEM40 (ENSAMEG00000004646) #28	CAND2 (ENSAMEG00000004596) #29	RPL32 (ENSAMEG00000004583) ##30	ENSAMEG00000004574	MBD4 (ENSAMEG00000004562)	ENSAMEG00000030948	IFT122 (ENSAMEG00000004471)	RHO (ENSAMEG00000004453)	H1-8 (ENSAMEG00000004448)	PLXND1 (ENSAMEG00000004387)
Mustelinae	ANCESTRAL SPECIES	18	ENSGT00390000011082	ENSGT00390000014353	ENSGT00940000159835	ENSGT00940000155616.c.a	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00950000186178	ENSGT00390000017530 #28	ENSGT00390000017740.a.b #29	ENSGT00940000153973.c.a.a ##30	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189
American mink	MODERN SPECIES	287													SYN2 (ENSNVIG00000008362) #20	ENSNVIG00000008402	TIMP4 (ENSNVIG00000008416) #21	PPARG (ENSNVIG00000008444) #22	TSEN2 (ENSNVIG00000008550) #23	MKRN2OS (ENSNVIG00000008607) #24	MKRN2 (ENSNVIG00000008629) #25	RAF1 (ENSNVIG00000008700) #26	ENSNVIG00000008812	TMEM40 (ENSNVIG00000008852) #28	CAND2 (ENSNVIG00000008985) #29	ENSNVIG00000009040 #30	EFCAB12 (ENSNVIG00000009088)	MBD4 (ENSNVIG00000009126)	IFT122 (ENSNVIG00000009217)	RHO (ENSNVIG00000009693)	H1-8 (ENSNVIG00000009706)	PLXND1 (ENSNVIG00000009720)	TMCC1 (ENSNVIG00000009775)
Ferret	MODERN SPECIES	163	FANCD2OS (ENSMPUG00000020114)	ENSMPUG00000017155	IRAK2 (ENSMPUG00000017157)	TATDN2 (ENSMPUG00000017160)	SEC13 (ENSMPUG00000017161)	ATP2B2 (ENSMPUG00000017163)	ENSMPUG00000017167	SLC6A11 (ENSMPUG00000017168)	SLC6A1 (ENSMPUG00000017170)	HRH1 (ENSMPUG00000020115)	ATG7 (ENSMPUG00000017171)	VGLL4 (ENSMPUG00000017174)	TAMM41 (ENSMPUG00000017175)	SYN2 (ENSMPUG00000017176) #20	TIMP4 (ENSMPUG00000017178) #21	PPARG (ENSMPUG00000017181) #22	TSEN2 (ENSMPUG00000017182) #23	MKRN2OS (ENSMPUG00000017183) #24	MKRN2 (ENSMPUG00000017184) #25	RAF1 (ENSMPUG00000017185) #26	TMEM40 (ENSMPUG00000017187) #28	CAND2 (ENSMPUG00000017188) #29	ENSMPUG00000017189 ##30	EFCAB12 (ENSMPUG00000017190)	MBD4 (ENSMPUG00000017195)	IFT122 (ENSMPUG00000017197)	RHO (ENSMPUG00000017225)	ENSMPUG00000017237	PLXND1 (ENSMPUG00000017238)	ENSMPUG00000017241	TMCC1 (ENSMPUG00000017243)
Canidae	ANCESTRAL SPECIES		ENSGT00390000011082	ENSGT00940000159835	ENSGT00940000155616.c.a	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00940000162517.e.b.b	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT01030000235208	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00390000017530 #28	ENSGT00390000017740.a.b #29	ENSGT00940000153973.c.a.b.a.b #30	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189
Canis_lupus	ANCESTRAL SPECIES	1	ENSGT00390000011082	ENSGT00940000159835	ENSGT00940000155616.c.a	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00940000162517.e.b.b	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00390000017530 #28	ENSGT00390000017740.a.b #29	ENSGT00940000153973.c.a.b.a.b #30	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00950000183087.A.a.a.b.p.a.a
Dog	MODERN SPECIES	12	VHL (ENSCAFG00845008162)	IRAK2 (ENSCAFG00845008041)	TATDN2 (ENSCAFG00845007966)	GHRL (ENSCAFG00845007901)	SEC13 (ENSCAFG00845007748)	ATP2B2 (ENSCAFG00845007221)	SLC6A11 (ENSCAFG00845006781)	SLC6A1 (ENSCAFG00845006668)	HRH1 (ENSCAFG00845006605)	ATG7 (ENSCAFG00845006288)	VGLL4 (ENSCAFG00845006044)	ENSCAFG00845005976	TAMM41 (ENSCAFG00845005937)	TIMP4 (ENSCAFG00845029189) #21	SYN2 (ENSCAFG00845029109) #20	PPARG (ENSCAFG00845029007) #22	TSEN2 (ENSCAFG00845028923) #23	MKRN2OS (ENSCAFG00845028857) #24	ENSCAFG00845028837	MKRN2 (ENSCAFG00845028765) #25	ENSCAFG00845028720	RAF1 (ENSCAFG00845028676) #26	TMEM40 (ENSCAFG00845028589) #28	CAND2 (ENSCAFG00845028524) #29	RPL32 (ENSCAFG00845028446) #30	ENSCAFG00845028379	MBD4 (ENSCAFG00845028304)	IFT122 (ENSCAFG00845027707)	RHO (ENSCAFG00845027581)	H1-8 (ENSCAFG00845027541)	PLXND1 (ENSCAFG00845026992)
Dingo	MODERN SPECIES	236	ENSCAFG00020008385	IRAK2 (ENSCAFG00020008374)	TATDN2 (ENSCAFG00020008366)	GHRL (ENSCAFG00020008352)	SEC13 (ENSCAFG00020008342)	ATP2B2 (ENSCAFG00020007890)	SLC6A11 (ENSCAFG00020007842)	SLC6A1 (ENSCAFG00020007634)	HRH1 (ENSCAFG00020007622)	ATG7 (ENSCAFG00020007592)	VGLL4 (ENSCAFG00020007573)	ENSCAFG00020007566	TAMM41 (ENSCAFG00020007562)	TIMP4 (ENSCAFG00020007541) #21	SYN2 (ENSCAFG00020007281) #20	PPARG (ENSCAFG00020007261) #22	TSEN2 (ENSCAFG00020007250) #23	MKRN2OS (ENSCAFG00020007247) #24	ENSCAFG00020007244	MKRN2 (ENSCAFG00020007243) #25	RAF1 (ENSCAFG00020007230) #26	TMEM40 (ENSCAFG00020007225) #28	CAND2 (ENSCAFG00020007135) #29	RPL32 (ENSCAFG00020007109) #30	EFCAB12 (ENSCAFG00020007096)	MBD4 (ENSCAFG00020007082)	IFT122 (ENSCAFG00020006537)	RHO (ENSCAFG00020006492)	H1-8 (ENSCAFG00020006486)	PLXND1 (ENSCAFG00020006389)	ENSCAFG00020006372
Red fox	MODERN SPECIES	130	TATDN2 (ENSVVUG00000023406)	GHRL (ENSVVUG00000023394)	SEC13 (ENSVVUG00000023379)	ATP2B2 (ENSVVUG00000017082)	SLC6A11 (ENSVVUG00000015910)	SLC6A1 (ENSVVUG00000015829)	HRH1 (ENSVVUG00000015819)	ATG7 (ENSVVUG00000015693)	VGLL4 (ENSVVUG00000015675)	ENSVVUG00000015670	TAMM41 (ENSVVUG00000015667)	ENSVVUG00000015666	TIMP4 (ENSVVUG00000015655) #21	SYN2 (ENSVVUG00000015294) #20	ENSVVUG00000015270	PPARG (ENSVVUG00000015266) #22	TSEN2 (ENSVVUG00000015253) #23	ENSVVUG00000015251 #24	ENSVVUG00000015247	ENSVVUG00000015244	ENSVVUG00000015242	MKRN2 (ENSVVUG00000015240) #25	RAF1 (ENSVVUG00000015233) #26	ENSVVUG00000015228	CAND2 (ENSVVUG00000014272) #29	RPL32 (ENSVVUG00000014231) ##30	EFCAB12 (ENSVVUG00000014226)	MBD4 (ENSVVUG00000014222)	IFT122 (ENSVVUG00000014184)	RHO (ENSVVUG00000014149)	H1-8 (ENSVVUG00000014145)
Felidae	ANCESTRAL SPECIES	17	ENSGT00390000014353	ENSGT00940000159835	ENSGT00940000155616.c.a	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000009113.a.a.q.a.a	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00390000017530 #28	ENSGT00390000017740.a.b #29	ENSGT00940000153973.c.a.b.b.d ##30	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951
Panthera	ANCESTRAL SPECIES	1	ENSGT00390000014353	ENSGT00940000159835	ENSGT00940000155616.c.a	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000009113.a.a.q.a.a	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00390000017530 #28	ENSGT00390000017740.a.b #29	ENSGT00940000153973.c.a.b.b.d ##30	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951
Panthera_a	ANCESTRAL SPECIES		ENSGT00390000014353	ENSGT00940000159835	ENSGT00940000155616.c.a	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000009113.a.a.q.a.a	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00390000017530 #28	ENSGT00390000017740.a.b #29	ENSGT00940000153973.c.a.b.b.d ##30	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951
leopard	MODERN SPECIES	114	ENSPPRG00000007104	ENSPPRG00000007193	IRAK2 (ENSPPRG00000007279)	TATDN2 (ENSPPRG00000007462)	GHRL (ENSPPRG00000007785)	ENSPPRG00000008346	ATP2B2 (ENSPPRG00000012017)	SLC6A11 (ENSPPRG00000014098)	SLC6A1 (ENSPPRG00000014472)	HRH1 (ENSPPRG00000018233)	ATG7 (ENSPPRG00000020749)	VGLL4 (ENSPPRG00000022454)	TAMM41 (ENSPPRG00000001031)	TIMP4 (ENSPPRG00000001115) #21	SYN2 (ENSPPRG00000001384) #20	PPARG (ENSPPRG00000001758) #22	ENSPPRG00000001808 #23
lion	MODERN SPECIES	2	ENSPLOG00000000086	IRAK2 (ENSPLOG00000000093)	TATDN2 (ENSPLOG00000000120)	GHRL (ENSPLOG00000000147)	SEC13 (ENSPLOG00000000172)	ATP2B2 (ENSPLOG00000000482)	SLC6A11 (ENSPLOG00000000895)	SLC6A1 (ENSPLOG00000001048)	HRH1 (ENSPLOG00000001150)	ATG7 (ENSPLOG00000001203)	ENSPLOG00000001305	VGLL4 (ENSPLOG00000001346)	TAMM41 (ENSPLOG00000001396)	SYN2 (ENSPLOG00000001422) #20	TIMP4 (ENSPLOG00000001454) #21	PPARG (ENSPLOG00000001496) #22	TSEN2 (ENSPLOG00000001594) #23	MKRN2OS (ENSPLOG00000001659) #24	MKRN2 (ENSPLOG00000001691) #25	RAF1 (ENSPLOG00000001743) #26	TMEM40 (ENSPLOG00000001779) #28	CAND2 (ENSPLOG00000001847) #29	RPL32 (ENSPLOG00000001870) ##30	EFCAB12 (ENSPLOG00000001903)	MBD4 (ENSPLOG00000002021)	IFT122 (ENSPLOG00000002159)	RHO (ENSPLOG00000002405)	H1-8 (ENSPLOG00000002423)	PLXND1 (ENSPLOG00000002460)	TMCC1 (ENSPLOG00000002518)	TRH (ENSPLOG00000002548)
Tiger	MODERN SPECIES	57	ENSPTIG00000006020	ENSPTIG00000005759	IRAK2 (ENSPTIG00000002325)	TATDN2 (ENSPTIG00000021381)	GHRL (ENSPTIG00000020903)	SEC13 (ENSPTIG00000019088)	ATP2B2 (ENSPTIG00000016845)	SLC6A11 (ENSPTIG00000016056)	SLC6A1 (ENSPTIG00000015454)	HRH1 (ENSPTIG00000005327)	ATG7 (ENSPTIG00000012782)	VGLL4 (ENSPTIG00000011766)	TAMM41 (ENSPTIG00000009439)	TIMP4 (ENSPTIG00000009274) #21	SYN2 (ENSPTIG00000005386) #20	PPARG (ENSPTIG00000021339) #22	TSEN2 (ENSPTIG00000021018) #23	MKRN2OS (ENSPTIG00000020689) #24	MKRN2 (ENSPTIG00000020261) #25	RAF1 (ENSPTIG00000019431) #26	TMEM40 (ENSPTIG00000016867) #28	CAND2 (ENSPTIG00000014551) #29	RPL32 (ENSPTIG00000013290) ##30	EFCAB12 (ENSPTIG00000012496)	ENSPTIG00000012068	IFT122 (ENSPTIG00000017825)	RHO (ENSPTIG00000016846)	H1-8 (ENSPTIG00000016687)	ENSPTIG00000016640	ENSPTIG00000016501
Cat	MODERN SPECIES	1	BRK1 (ENSFCAG00000011232)	ENSFCAG00000041497	IRAK2 (ENSFCAG00000011239)	TATDN2 (ENSFCAG00000011241)	GHRL (ENSFCAG00000011244)	SEC13 (ENSFCAG00000011245)	ATP2B2 (ENSFCAG00000011247)	SLC6A11 (ENSFCAG00000006043)	SLC6A1 (ENSFCAG00000004345)	HRH1 (ENSFCAG00000034897)	ATG7 (ENSFCAG00000003263)	VGLL4 (ENSFCAG00000003266)	TAMM41 (ENSFCAG00000030835)	SYN2 (ENSFCAG00000006229) #20	TIMP4 (ENSFCAG00000028966) #21	PPARG (ENSFCAG00000006231) #22	TSEN2 (ENSFCAG00000025500) #23	MKRN2OS (ENSFCAG00000046813) #24	ENSFCAG00000049119	MKRN2 (ENSFCAG00000007979) #25	RAF1 (ENSFCAG00000026299) #26	TMEM40 (ENSFCAG00000037003) #28	ENSFCAG00000052196	CAND2 (ENSFCAG00000008340) #29	RPL32 (ENSFCAG00000030450) ##30	EFCAB12 (ENSFCAG00000000081)	MBD4 (ENSFCAG00000000083)	IFT122 (ENSFCAG00000000086)	RHO (ENSFCAG00000000092)	H1-8 (ENSFCAG00000000094)	PLXND1 (ENSFCAG00000000095)
Laurasiatheria_c	ANCESTRAL SPECIES	2	ENSGT00390000011082	ENSGT00390000014353	ENSGT00940000159835	ENSGT00940000155616.c.a	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00950000186178	ENSGT00390000017530 #28	ENSGT00390000017740.a.b #29	ENSGT00940000153973.d ##30	ENSGT00940000153973.c.a.b.b.d ##30	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a
Chiroptera	ANCESTRAL SPECIES	54	ENSGT00390000011082	ENSGT00390000014353	ENSGT00940000159835	ENSGT00940000155616.c.a	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00390000017530 #28	ENSGT00390000017740.a.b #29	ENSGT00940000153973.c.a.b.b.d ##30	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951
Microchiroptera	ANCESTRAL SPECIES	16	ENSGT00390000011082	ENSGT00390000014353	ENSGT00940000159835	ENSGT00940000155616.c.a	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00390000017530 #28	ENSGT00390000017740.a.b #29	ENSGT00940000153973.c.a.b.b.d ##30	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951
Greater horseshoe bat	MODERN SPECIES	8	ENSRFEG00010010913	ENSRFEG00010010885	IRAK2 (ENSRFEG00010010790)	TATDN2 (ENSRFEG00010010704)	ENSRFEG00010010629	ENSRFEG00010010425	ATP2B2 (ENSRFEG00010019414)	SLC6A11 (ENSRFEG00010019331)	SLC6A1 (ENSRFEG00010019187)	HRH1 (ENSRFEG00010019159)	ATG7 (ENSRFEG00010019096)	VGLL4 (ENSRFEG00010019005)	TAMM41 (ENSRFEG00010018912)	TIMP4 (ENSRFEG00010018875) #21	SYN2 (ENSRFEG00010018840) #20	PPARG (ENSRFEG00010018692) #22	TSEN2 (ENSRFEG00010018592) #23	MKRN2OS (ENSRFEG00010018565) #24	MKRN2 (ENSRFEG00010018469) #25	RAF1 (ENSRFEG00010018423) #26	TMEM40 (ENSRFEG00010018278) #28	CAND2 (ENSRFEG00010018212) #29	RPL32 (ENSRFEG00010018162) ##30	EFCAB12 (ENSRFEG00010018070)	MBD4 (ENSRFEG00010018007)	IFT122 (ENSRFEG00010017745)	RHO (ENSRFEG00010017659)	PLXND1 (ENSRFEG00010017592)	TMCC1 (ENSRFEG00010017473)	ENSRFEG00010017442	TRH (ENSRFEG00010017403)
Microbat	MODERN SPECIES	945	ENSMLUG00000006216	ENSMLUG00000004567	IRAK2 (ENSMLUG00000004572)	TATDN2 (ENSMLUG00000004584)	GHRL (ENSMLUG00000012014)	SEC13 (ENSMLUG00000004901)	ATP2B2 (ENSMLUG00000001467)	ENSMLUG00000009590	SLC6A1 (ENSMLUG00000002027)	HRH1 (ENSMLUG00000010552)	ATG7 (ENSMLUG00000010572)	VGLL4 (ENSMLUG00000010597)	TAMM41 (ENSMLUG00000015063)	TIMP4 (ENSMLUG00000006263) #21	SYN2 (ENSMLUG00000006253) #20	PPARG (ENSMLUG00000017638) #22	TSEN2 (ENSMLUG00000017641) #23	MKRN2OS (ENSMLUG00000024734) #24	MKRN2 (ENSMLUG00000017643) #25	RAF1 (ENSMLUG00000017645) #26	TMEM40 (ENSMLUG00000002835) #28	CAND2 (ENSMLUG00000006333) #29	RPL32 (ENSMLUG00000022528) ##30	ENSMLUG00000014759	MBD4 (ENSMLUG00000014766)	IFT122 (ENSMLUG00000014771)	RHO (ENSMLUG00000014786)	ENSMLUG00000025226	PLXND1 (ENSMLUG00000014790)	TMCC1 (ENSMLUG00000016755)	TRH (ENSMLUG00000007249)
Megabat	MODERN SPECIES	551																PPARG (ENSPVAG00000009845) #22
Equus	ANCESTRAL SPECIES	5	ENSGT00390000016970	ENSGT00390000000631	ENSGT00940000159835	ENSGT00940000155616.c.a	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT01030000235208	ENSGT00390000003839 #24	ENSGT00950000183077.a.b #25	ENSGT00940000156084.ab.a.b #26	ENSGT00950000186178	ENSGT00390000017530 #28	ENSGT00390000017740.a.b #29	ENSGT00940000153973.d ##30	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189
Horse	MODERN SPECIES	7	IRAK2 (ENSECAG00000012960)	TATDN2 (ENSECAG00000010589)	GHRL (ENSECAG00000025073)	SEC13 (ENSECAG00000020459)	ATP2B2 (ENSECAG00000023528)	SLC6A11 (ENSECAG00000004220)	SLC6A1 (ENSECAG00000000699)	HRH1 (ENSECAG00000004544)	ENSECAG00000057850	ENSECAG00000048096	ATG7 (ENSECAG00000022756)	VGLL4 (ENSECAG00000039947)	TAMM41 (ENSECAG00000013860)	TIMP4 (ENSECAG00000011609) #21	SYN2 (ENSECAG00000049642) #20	PPARG (ENSECAG00000016664) #22	ENSECAG00000039510	TSEN2 (ENSECAG00000012813) #23	MKRN2OS (ENSECAG00000012416)	MKRN2 (ENSECAG00000024404) #25	RAF1 (ENSECAG00000011807) #26	ENSECAG00000033555	TMEM40 (ENSECAG00000008940) #28	RPL32 (ENSECAG00000049946) ##30	CAND2 (ENSECAG00000010515) #29	MBD4 (ENSECAG00000022106)	IFT122 (ENSECAG00000015360)	RHO (ENSECAG00000013709)	H1-8 (ENSECAG00000013614)	PLXND1 (ENSECAG00000009159)	TMCC1 (ENSECAG00000006725)
Donkey	MODERN SPECIES	13	IRAK2 (ENSEASG00005014286)	TATDN2 (ENSEASG00005014289)	GHRL (ENSEASG00005014290)	SEC13 (ENSEASG00005014291)	ATP2B2 (ENSEASG00005014293)	ENSEASG00005034257	SLC6A11 (ENSEASG00005014295)	SLC6A1 (ENSEASG00005014296)	HRH1 (ENSEASG00005025266)	ATG7 (ENSEASG00005014298)	ENSEASG00005027051	VGLL4 (ENSEASG00005014301)	TAMM41 (ENSEASG00005014302)	SYN2 (ENSEASG00005014311) #20	TIMP4 (ENSEASG00005030754) #21	PPARG (ENSEASG00005014732) #22	TSEN2 (ENSEASG00005014763) #23	ENSEASG00005014772	MKRN2OS (ENSEASG00005035083) #24	MKRN2 (ENSEASG00005014776) #25	ENSEASG00005014777 #26	TMEM40 (ENSEASG00005033260) #28	ENSEASG00005025405	CAND2 (ENSEASG00005014788) #29	ENSEASG00005014792 ##30	MBD4 (ENSEASG00005014800)	IFT122 (ENSEASG00005014840)	RHO (ENSEASG00005015347)	H1-8 (ENSEASG00005025925)	PLXND1 (ENSEASG00005015351)	TMCC1 (ENSEASG00005015373)
Artiodactyla	ANCESTRAL SPECIES	2	ENSGT00390000014353	ENSGT00940000159835	ENSGT00940000155616.c.a.a	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00910000147252	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00390000017530 #28	ENSGT00390000017740.a.b #29	ENSGT00940000153973.d ##30	ENSGT00940000153973.c.a.b.b ##30	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT01010000229800	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT00930000152979
Suina	ANCESTRAL SPECIES	1	ENSGT00390000014353	ENSGT00940000159835	ENSGT00940000155616.c.a.a	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00910000147252	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT01030000235208	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00390000017530 #28	ENSGT00390000017740.a.b #29	ENSGT00940000153973.c.a.b.b ##30	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT01010000229800	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a
Chacoan peccary	MODERN SPECIES	950	IRAK2 (ENSCWAG00000021763)	TATDN2 (ENSCWAG00000021773)	GHRL (ENSCWAG00000021782)	SEC13 (ENSCWAG00000021789)	ENSCWAG00000011861	ATP2B2 (ENSCWAG00000012003)	SLC6A11 (ENSCWAG00000015415)	SLC6A1 (ENSCWAG00000015592)	HRH1 (ENSCWAG00000016580)	ATG7 (ENSCWAG00000016602)	VGLL4 (ENSCWAG00000016758)	ENSCWAG00000016872	TAMM41 (ENSCWAG00000016892)	SYN2 (ENSCWAG00000016935) #20	TIMP4 (ENSCWAG00000017007) #21	PPARG (ENSCWAG00000017057) #22	TSEN2 (ENSCWAG00000017441) #23	ENSCWAG00000017774	MKRN2 (ENSCWAG00000017797) #25	RAF1 (ENSCWAG00000017888) #26	TMEM40 (ENSCWAG00000017953) #28	CAND2 (ENSCWAG00000018031) #29	RPL32 (ENSCWAG00000018094) ##30	EFCAB12 (ENSCWAG00000018153)	ENSCWAG00000018222	ENSCWAG00000018236	ENSCWAG00000018255	IFT122 (ENSCWAG00000018289)	RHO (ENSCWAG00000018568)	H1-8 (ENSCWAG00000018609)	PLXND1 (ENSCWAG00000018660)
Pig	MODERN SPECIES	4	BRK1 (ENSSSCG00000011565)	ENSSSCG00000011567	IRAK2 (ENSSSCG00000011570)	TATDN2 (ENSSSCG00000011569)	GHRL (ENSSSCG00000011568)	SEC13 (ENSSSCG00000011572)	ATP2B2 (ENSSSCG00000023084)	SLC6A11 (ENSSSCG00000039850)	SLC6A1 (ENSSSCG00000011577)	HRH1 (ENSSSCG00000011576)	ATG7 (ENSSSCG00000011575)	VGLL4 (ENSSSCG00000030581)	TAMM41 (ENSSSCG00000011578)	SYN2 (ENSSSCG00000023225) #20	TIMP4 (ENSSSCG00000033000) #21	PPARG (ENSSSCG00000011579) #22	TSEN2 (ENSSSCG00000011580) #23	MKRN2OS (ENSSSCG00000011581) #24	ENSSSCG00000045850	MKRN2 (ENSSSCG00000029877) #25	RAF1 (ENSSSCG00000024453) #26	ENSSSCG00000056163	TMEM40 (ENSSSCG00000011583) #28	CAND2 (ENSSSCG00000011582) #29	RPL32 (ENSSSCG00000035811) #30	EFCAB12 (ENSSSCG00000011587)	MBD4 (ENSSSCG00000033303)	IFT122 (ENSSSCG00000011589)	RHO (ENSSSCG00000011590)	H1-8 (ENSSSCG00000011591)	PLXND1 (ENSSSCG00000011592)
Artiodactyla_a	ANCESTRAL SPECIES	18	ENSGT00390000014353	ENSGT00940000159835	ENSGT00940000155616.c.a.a	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00910000147252	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00390000017530 #28	ENSGT00390000017740.a.b #29	ENSGT00940000153973.d ##30	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT01010000229800	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT00940000175447	ENSGT00930000152979
Camelidae	ANCESTRAL SPECIES	7	ENSGT00940000170109	ENSGT00390000014353	ENSGT00940000159835	ENSGT00940000155616.c.a.a	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00390000017530 #28	ENSGT00390000017740.a.b #29	ENSGT00940000153973.c.b ##30	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000175447	ENSGT00930000152979	ENSGT01020000230394.e.b.a	ENSGT00940000155189
Arabian camel	MODERN SPECIES	8	ENSCDRG00005014871	ENSCDRG00005014908	IRAK2 (ENSCDRG00005014940)	TATDN2 (ENSCDRG00005015003)	GHRL (ENSCDRG00005015107)	SEC13 (ENSCDRG00005015206)	ATP2B2 (ENSCDRG00005015469)	SLC6A11 (ENSCDRG00005015983)	SLC6A1 (ENSCDRG00005016134)	HRH1 (ENSCDRG00005016405)	ATG7 (ENSCDRG00005016438)	VGLL4 (ENSCDRG00005016647)	TAMM41 (ENSCDRG00005016988)	SYN2 (ENSCDRG00005017059) #20	TIMP4 (ENSCDRG00005017087) #21	PPARG (ENSCDRG00005017141) #22	TSEN2 (ENSCDRG00005017293) #23	MKRN2OS (ENSCDRG00005017382) #24	MKRN2 (ENSCDRG00005017406) #25	RAF1 (ENSCDRG00005017576) #26	TMEM40 (ENSCDRG00005017673) #28	CAND2 (ENSCDRG00005017872) #29	ENSCDRG00005018038 ##30	EFCAB12 (ENSCDRG00005018119)	MBD4 (ENSCDRG00005018206)	IFT122 (ENSCDRG00005018267)	RHO (ENSCDRG00005018442)	ENSCDRG00005018477	ENSCDRG00005018504	ENSCDRG00005018533	PLXND1 (ENSCDRG00005018551)
Alpaca	MODERN SPECIES	1304														ENSVPAG00000011052 #20	TIMP4 (ENSVPAG00000011058) #21	PPARG (ENSVPAG00000011059) #22	ENSVPAG00000011061 #23	MKRN2 (ENSVPAG00000011064) #25	RAF1 (ENSVPAG00000011066) #26	TMEM40 (ENSVPAG00000011071) #28
Artiodactyla_b	ANCESTRAL SPECIES	21	ENSGT00390000014353	ENSGT00940000159835	ENSGT00940000155616.c.a.a	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00910000147252	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00390000017530 #28	ENSGT00390000017740.a.b #29	ENSGT00940000153973.d ##30	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT01010000229800	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT00930000152979	ENSGT00940000175447
Cetacea	ANCESTRAL SPECIES	7	ENSGT00390000011082	ENSGT00390000014353	ENSGT00940000159835	ENSGT00940000155616.c.a.a	ENSGT00390000004064	ENSGT00940000153393.B.`b	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00390000017530 #28	ENSGT00390000017740.a.b #29	ENSGT00940000153973.c.a.b.b ##30	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT01010000229800	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT00930000152979	ENSGT01020000230394.e.b.a
Blue whale	MODERN SPECIES	2	IRAK2 (ENSBMSG00010008329)	TATDN2 (ENSBMSG00010008348)	ENSBMSG00010008375	SEC13 (ENSBMSG00010008420)	ATP2B2 (ENSBMSG00010008618)	SLC6A11 (ENSBMSG00010009702)	SLC6A1 (ENSBMSG00010009806)	ENSBMSG00010009900	HRH1 (ENSBMSG00010009905)	ATG7 (ENSBMSG00010009931)	ENSBMSG00010009994	ENSBMSG00010010031	TAMM41 (ENSBMSG00010010044)	SYN2 (ENSBMSG00010010076) #20	TIMP4 (ENSBMSG00010010106) #21	PPARG (ENSBMSG00010010135) #22	TSEN2 (ENSBMSG00010010317) #23	MKRN2OS (ENSBMSG00010010343) #24	MKRN2 (ENSBMSG00010010365) #25	RAF1 (ENSBMSG00010010408) #26	TMEM40 (ENSBMSG00010010438) #28	CAND2 (ENSBMSG00010010467) #29	RPL32 (ENSBMSG00010010483) ##30	EFCAB12 (ENSBMSG00010010503)	ENSBMSG00010010533	ENSBMSG00010010542	IFT122 (ENSBMSG00010010593)	RHO (ENSBMSG00010010727)	ENSBMSG00010010803	PLXND1 (ENSBMSG00010010833)	TMCC1 (ENSBMSG00010010919)
Odontoceti	ANCESTRAL SPECIES	5	ENSGT00390000011082	ENSGT00390000014353	ENSGT00940000159835	ENSGT00940000155616.c.a.a	ENSGT00390000004064	ENSGT00940000153393.B.`b	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00390000017530 #28	ENSGT00390000017740.a.b #29	ENSGT00940000153973.c.a.b.b ##30	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT00930000152979	ENSGT01020000230394.e.b.a	ENSGT00940000155189
Sperm whale	MODERN SPECIES	9	FANCD2OS (ENSPCTG00005007769)	BRK1 (ENSPCTG00005007752)	ENSPCTG00005007736	IRAK2 (ENSPCTG00005007701)	TATDN2 (ENSPCTG00005007678)	GHRL (ENSPCTG00005007648)	SEC13 (ENSPCTG00005007576)	SLC6A11 (ENSPCTG00005007501)	SLC6A1 (ENSPCTG00005006885)	HRH1 (ENSPCTG00005006823)	ATG7 (ENSPCTG00005006565)	VGLL4 (ENSPCTG00005006432)	TAMM41 (ENSPCTG00005006384)	TIMP4 (ENSPCTG00005006355) #21	SYN2 (ENSPCTG00005006330) #20	PPARG (ENSPCTG00005006236) #22	MKRN2OS (ENSPCTG00005006199) #24	MKRN2 (ENSPCTG00005006141) #25	RAF1 (ENSPCTG00005006081) #26	ENSPCTG00005006042 #29	ENSPCTG00005006016 ##30	EFCAB12 (ENSPCTG00005005960)	MBD4 (ENSPCTG00005005918)	IFT122 (ENSPCTG00005005825)	RHO (ENSPCTG00005005781)	H1-8 (ENSPCTG00005005747)	ENSPCTG00005005647	ENSPCTG00005005684	TRH (ENSPCTG00005005621)	ENSPCTG00005005601	TMCC1 (ENSPCTG00005005558)
Odontoceti_a	ANCESTRAL SPECIES	5	ENSGT00940000170109	ENSGT00390000014353.q	ENSGT00940000159835	ENSGT00940000155616.c.a.a	ENSGT00390000004064	ENSGT00940000153393.B.`b	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00390000017530 #28	ENSGT00390000017740.a.b #29	ENSGT00940000153973.c.a.b.b ##30	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951
Dolphin	MODERN SPECIES	2550											ATG7 (ENSTTRG00000016560)	ENSTTRG00000016561	TAMM41 (ENSTTRG00000016562)	SYN2 (ENSTTRG00000016563) #20	TIMP4 (ENSTTRG00000016564) #21	PPARG (ENSTTRG00000016565) #22	TSEN2 (ENSTTRG00000016566) #23
Odontoceti_b	ANCESTRAL SPECIES	6	ENSGT00940000170109	ENSGT00390000014353.q	ENSGT00940000159835	ENSGT00940000155616.c.a.a	ENSGT00390000004064	ENSGT00940000153393.B.`b	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00390000017530 #28	ENSGT00390000017740.a.b #29	ENSGT00940000153973.c.a.b.b ##30	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951
Vaquita	MODERN SPECIES	2	ENSPSNG00000016577	ENSPSNG00000016532	IRAK2 (ENSPSNG00000016489)	TATDN2 (ENSPSNG00000016441)	GHRL (ENSPSNG00000016272)	ENSPSNG00000015998	ATP2B2 (ENSPSNG00000013827)	SLC6A11 (ENSPSNG00000013275)	SLC6A1 (ENSPSNG00000012418)	HRH1 (ENSPSNG00000012320)	ATG7 (ENSPSNG00000011678)	VGLL4 (ENSPSNG00000011411)	TAMM41 (ENSPSNG00000011313)	TIMP4 (ENSPSNG00000011214) #21	SYN2 (ENSPSNG00000010964) #20	PPARG (ENSPSNG00000010554) #22	TSEN2 (ENSPSNG00000010460) #23	MKRN2OS (ENSPSNG00000010409) #24	MKRN2 (ENSPSNG00000010288) #25	RAF1 (ENSPSNG00000010184) #26	TMEM40 (ENSPSNG00000010002) #28	CAND2 (ENSPSNG00000009832) #29	RPL32 (ENSPSNG00000022724) #30	EFCAB12 (ENSPSNG00000022723)	MBD4 (ENSPSNG00000022722)	IFT122 (ENSPSNG00000022721)	RHO (ENSPSNG00000022720)	H1-8 (ENSPSNG00000022719)	PLXND1 (ENSPSNG00000022718)	ENSPSNG00000022717	ENSPSNG00000022714
Monodontidae	ANCESTRAL SPECIES	4	ENSGT00940000170109	ENSGT00390000014353.q	ENSGT00940000159835	ENSGT00940000155616.c.a.a	ENSGT00390000004064	ENSGT00940000153393.B.`b	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00390000017530 #28	ENSGT00390000017740.a.b #29	ENSGT00940000153973.c.a.b.b ##30	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951
Beluga whale	MODERN SPECIES	66	ENSDLEG00000014934	ENSDLEG00000014946	IRAK2 (ENSDLEG00000014959)	ENSDLEG00000014979	ENSDLEG00000014986	GHRL (ENSDLEG00000015002)	SEC13 (ENSDLEG00000015045)	ATP2B2 (ENSDLEG00000015650)	SLC6A11 (ENSDLEG00000021059)	SLC6A1 (ENSDLEG00000021420)	HRH1 (ENSDLEG00000021424)	ATG7 (ENSDLEG00000021427)	TAMM41 (ENSDLEG00000021438)	SYN2 (ENSDLEG00000021448) #20	TIMP4 (ENSDLEG00000021450) #21	ENSDLEG00000021458 #22	ENSDLEG00000021477	MKRN2 (ENSDLEG00000021478) #25	RAF1 (ENSDLEG00000007956) #26	TMEM40 (ENSDLEG00000008007) #28	CAND2 (ENSDLEG00000008059) #29	RPL32 (ENSDLEG00000008175) ##30	ENSDLEG00000008201	MBD4 (ENSDLEG00000008239)	IFT122 (ENSDLEG00000008304)	RHO (ENSDLEG00000008470)	H1-8 (ENSDLEG00000008521)	PLXND1 (ENSDLEG00000008614)	TMCC1 (ENSDLEG00000008842)	TRH (ENSDLEG00000008893)	RBSN (ENSDLEG00000008914)
Narwhal	MODERN SPECIES	310	BRK1 (ENSMMNG00015011023)	IRAK2 (ENSMMNG00015011051)	TATDN2 (ENSMMNG00015011101)	GHRL (ENSMMNG00015011143)	SEC13 (ENSMMNG00015011196)	ATP2B2 (ENSMMNG00015011282)	ENSMMNG00015011333	SLC6A11 (ENSMMNG00015011359)	SLC6A1 (ENSMMNG00015011419)	HRH1 (ENSMMNG00015011469)	ATG7 (ENSMMNG00015011505)	VGLL4 (ENSMMNG00015011616)	TAMM41 (ENSMMNG00015011672)	SYN2 (ENSMMNG00015011708) #20	TIMP4 (ENSMMNG00015011737) #21	PPARG (ENSMMNG00015011771) #22	TSEN2 (ENSMMNG00015011810) #23	MKRN2OS (ENSMMNG00015011881) #24	MKRN2 (ENSMMNG00015011904) #25	RAF1 (ENSMMNG00015011951) #26	TMEM40 (ENSMMNG00015012000) #28	CAND2 (ENSMMNG00015012039) #29	RPL32 (ENSMMNG00015012118) ##30	EFCAB12 (ENSMMNG00015012144)	MBD4 (ENSMMNG00015012156)	IFT122 (ENSMMNG00015012203)	RHO (ENSMMNG00015012293)	H1-8 (ENSMMNG00015012313)	PLXND1 (ENSMMNG00015012370)	TMCC1 (ENSMMNG00015012483)	TRH (ENSMMNG00015012517)
Pecora	ANCESTRAL SPECIES	17	ENSGT00940000155721	ENSGT00390000012690	ENSGT00940000155616.c.a.b	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00910000147252	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00390000017530 #28	ENSGT00390000017740.a.b #29	ENSGT00940000153973.d ##30	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951
Yarkand deer	MODERN SPECIES	16	ENSCHYG00000023376	ENSCHYG00000023706 #36	TMEM43 (ENSCHYG00000023737) #37	XPC (ENSCHYG00000023838)	LSM3 (ENSCHYG00000023916)	SLC6A6 (ENSCHYG00000023942)	GRIP2 (ENSCHYG00000024067)	ENSCHYG00000024372	C3orf20 (ENSCHYG00000024531)	FGD5 (ENSCHYG00000024639)	NR2C2 (ENSCHYG00000024864)	ENSCHYG00000025047	RBSN (ENSCHYG00000025089)	ENSCHYG00000025128 #20	TIMP4 (ENSCHYG00000025170) #21	PPARG (ENSCHYG00000025198) #22	TSEN2 (ENSCHYG00000025333) #23	MKRN2OS (ENSCHYG00000025406) #24	MKRN2 (ENSCHYG00000025428) #25	RAF1 (ENSCHYG00000025496) #26	ENSCHYG00000013805	TMEM40 (ENSCHYG00000013848) #28	CAND2 (ENSCHYG00000014141) #29	ENSCHYG00000014472	ENSCHYG00000014488 ##30	EFCAB12 (ENSCHYG00000014606)	MBD4 (ENSCHYG00000014755)	IFT122 (ENSCHYG00000015047)	RHO (ENSCHYG00000017188)	H1-8 (ENSCHYG00000017241)	ENSCHYG00000017294
Percora_a	ANCESTRAL SPECIES	19	ENSGT00940000155721	ENSGT00390000012690	ENSGT00940000155616.c.a.b	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00910000147252	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00390000017530 #28	ENSGT00390000017740.a.b #29	ENSGT00940000153973.d ##30	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951
Siberian musk deer	MODERN SPECIES	1221	CLEC3B (ENSMMSG00000018700)	EXOSC7 (ENSMMSG00000018645)	ENSMMSG00000018519	TMEM42 (ENSMMSG00000018480)	ENSMMSG00000018446	SEC13 (ENSMMSG00000018353)	ATP2B2 (ENSMMSG00000015764)	SLC6A11 (ENSMMSG00000015601)	SLC6A1 (ENSMMSG00000015486)	HRH1 (ENSMMSG00000015454)	ATG7 (ENSMMSG00000015338)	VGLL4 (ENSMMSG00000015264)	TAMM41 (ENSMMSG00000015235)	TIMP4 (ENSMMSG00000015209) #21	SYN2 (ENSMMSG00000015141) #20	PPARG (ENSMMSG00000015004) #22	TSEN2 (ENSMMSG00000014963) #23	MKRN2OS (ENSMMSG00000014926) #24	MKRN2 (ENSMMSG00000014895) #25	RAF1 (ENSMMSG00000024157) #26	TMEM40 (ENSMMSG00000024144) #28	CAND2 (ENSMMSG00000024132) #29	RPL32 (ENSMMSG00000024124) ##30	EFCAB12 (ENSMMSG00000024116)	MBD4 (ENSMMSG00000024114)	IFT122 (ENSMMSG00000024092)	RHO (ENSMMSG00000024086)	ENSMMSG00000024082	PLXND1 (ENSMMSG00000024073)	TMCC1 (ENSMMSG00000024064)	ENSMMSG00000024063
Bovidae	ANCESTRAL SPECIES	19	ENSGT00390000013132 #36	ENSGT00390000009671 #37	ENSGT00390000005194	ENSGT00390000013951	ENSGT00940000154583	ENSGT00940000155615	ENSGT00440000033958	ENSGT00940000153655.B	ENSGT00940000157922	ENSGT00940000158393	ENSGT00640000091558	ENSGT00390000007159	ENSGT00390000000616.l	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00390000017530 #28	ENSGT00390000017740.a.b #29	ENSGT00940000153973.d ##30	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951
Caprinae	ANCESTRAL SPECIES	15	ENSGT00390000013132 #36	ENSGT00390000009671 #37	ENSGT00390000005194	ENSGT00390000013951	ENSGT00940000154583	ENSGT00940000155615	ENSGT00440000033958	ENSGT00940000153655.B	ENSGT00940000157922	ENSGT00940000158393	ENSGT00640000091558	ENSGT00390000007159	ENSGT00390000000616.l	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00390000017530 #28	ENSGT00390000017740.a.b #29	ENSGT00940000153973.d ##30	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951
Goat	MODERN SPECIES	14	CHCHD4 (ENSCHIG00000018477) #36	TMEM43 (ENSCHIG00000020802) #37	XPC (ENSCHIG00000017709)	LSM3 (ENSCHIG00000024650)	SLC6A6 (ENSCHIG00000024785)	GRIP2 (ENSCHIG00000016620)	CCDC174 (ENSCHIG00000008286)	C3orf20 (ENSCHIG00000009719)	FGD5 (ENSCHIG00000023792)	NR2C2 (ENSCHIG00000008676)	MRPS25 (ENSCHIG00000009931)	RBSN (ENSCHIG00000019361)	ENSCHIG00000027078	TIMP4 (ENSCHIG00000017995) #21	SYN2 (ENSCHIG00000024912) #20	PPARG (ENSCHIG00000015877) #22	TSEN2 (ENSCHIG00000013772) #23	MKRN2OS (ENSCHIG00000013445) #24	MKRN2 (ENSCHIG00000021098) #25	RAF1 (ENSCHIG00000006954) #26	CAND2 (ENSCHIG00000017799) #29	RPL32 (ENSCHIG00000011099) ##30	EFCAB12 (ENSCHIG00000024180)	MBD4 (ENSCHIG00000009760)	IFT122 (ENSCHIG00000018009)	RHO (ENSCHIG00000019086)	H1-8 (ENSCHIG00000015286)	PLXND1 (ENSCHIG00000008763)	ENSCHIG00000016746	ENSCHIG00000015861	TRH (ENSCHIG00000025325)
Rambouillet Sheep	MODERN SPECIES	10	WNT7A (ENSOARG00020025976) #35	ENSOARG00020025971	ENSOARG00020025966	CHCHD4 (ENSOARG00020025962) #36	TMEM43 (ENSOARG00020025957) #37	ENSOARG00020025950	SLC6A6 (ENSOARG00020025943)	GRIP2 (ENSOARG00020025919)	CCDC174 (ENSOARG00020025904)	C3orf20 (ENSOARG00020025893)	NR2C2 (ENSOARG00020025878)	MRPS25 (ENSOARG00020025871)	RBSN (ENSOARG00020025862)	ENSOARG00020025856 #21	SYN2 (ENSOARG00020025846) #20	PPARG (ENSOARG00020025834) #22	TSEN2 (ENSOARG00020025828) #23	MKRN2OS (ENSOARG00020025824) #24	MKRN2 (ENSOARG00020025818) #25	RAF1 (ENSOARG00020025810) #26	TMEM40 (ENSOARG00020025803) #28	CAND2 (ENSOARG00020025794) #29	RPL32 (ENSOARG00020025785) ##30	EFCAB12 (ENSOARG00020025775)	MBD4 (ENSOARG00020025769)	IFT122 (ENSOARG00020025765)	RHO (ENSOARG00020025763)	ENSOARG00020025760	PLXND1 (ENSOARG00020025735)	TMCC1 (ENSOARG00020025721)	TRH (ENSOARG00020025716)
Bovinae	ANCESTRAL SPECIES	16	ENSGT00390000013132 #36	ENSGT00390000009671 #37	ENSGT00390000005194	ENSGT00390000013951	ENSGT00940000154583	ENSGT00940000155615	ENSGT00440000033958	ENSGT00940000153655.B	ENSGT00940000157922	ENSGT00940000158393	ENSGT00640000091558	ENSGT00390000007159	ENSGT00390000000616.l	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00390000017530 #28	ENSGT00390000017740.a.b #29	ENSGT00940000153973.d ##30	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000175447	ENSGT00930000152979
American bison	MODERN SPECIES	3340	ENSBBBG00000010906	ENSBBBG00000001941	CHCHD4 (ENSBBBG00000010930) #36	TMEM43 (ENSBBBG00000010956) #37	XPC (ENSBBBG00000001954)	LSM3 (ENSBBBG00000007967)	SLC6A6 (ENSBBBG00000010987)	GRIP2 (ENSBBBG00000011088)	CCDC174 (ENSBBBG00000002003)	C3orf20 (ENSBBBG00000011153)	NR2C2 (ENSBBBG00000011226)	MRPS25 (ENSBBBG00000011234)	RBSN (ENSBBBG00000011250)	TIMP4 (ENSBBBG00000011264) #21	SYN2 (ENSBBBG00000011280) #20	PPARG (ENSBBBG00000011336) #22	TSEN2 (ENSBBBG00000002087) #23	MKRN2OS (ENSBBBG00000006934) #24	MKRN2 (ENSBBBG00000011440) #25	RAF1 (ENSBBBG00000011493) #26	TMEM40 (ENSBBBG00000011569) #28	CAND2 (ENSBBBG00000002144) #29	RPL32 (ENSBBBG00000002148) ##30	EFCAB12 (ENSBBBG00000011681)	MBD4 (ENSBBBG00000011698)	IFT122 (ENSBBBG00000002240)	RHO (ENSBBBG00000012003)	ENSBBBG00000012007	ENSBBBG00000012012	TMCC1 (ENSBBBG00000012034)	ENSBBBG00000012036
Bos	ANCESTRAL SPECIES	16	ENSGT00390000013132 #36	ENSGT00390000009671 #37	ENSGT00390000005194	ENSGT00390000013951	ENSGT00940000154583	ENSGT00940000155615	ENSGT00440000033958	ENSGT00940000153655.B	ENSGT00940000157922	ENSGT00940000158393	ENSGT00640000091558	ENSGT00390000007159	ENSGT00390000000616.l	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00390000017530 #28	ENSGT00390000017740.a.b #29	ENSGT00940000153973.d ##30	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000175447	ENSGT00930000152979
Bos_b	ANCESTRAL SPECIES	17	ENSGT00390000013132 #36	ENSGT00390000009671 #37	ENSGT00390000005194	ENSGT00390000013951	ENSGT00940000154583	ENSGT00940000155615	ENSGT00440000033958	ENSGT00940000153655.B	ENSGT00940000157922	ENSGT00940000158393	ENSGT00640000091558	ENSGT00390000007159	ENSGT00390000000616.l	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00390000017530 #28	ENSGT00390000017740.a.b #29	ENSGT00940000153973.d ##30	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951
Hybrid Bos Indicus	MODERN SPECIES	14	CHCHD4 (ENSBIXG00005027940) #36	TMEM43 (ENSBIXG00005027897) #37	LSM3 (ENSBIXG00005027836)	SLC6A6 (ENSBIXG00005027782)	GRIP2 (ENSBIXG00005027668)	ENSBIXG00005027488	ENSBIXG00005027475	CCDC174 (ENSBIXG00005027454)	C3orf20 (ENSBIXG00005027421)	FGD5 (ENSBIXG00005027347)	NR2C2 (ENSBIXG00005026766)	MRPS25 (ENSBIXG00005026733)	RBSN (ENSBIXG00005026693)	SYN2 (ENSBIXG00005026582) #20	TIMP4 (ENSBIXG00005026516) #21	ENSBIXG00005026465 #22	MKRN2OS (ENSBIXG00005026155) #24	MKRN2 (ENSBIXG00005026143) #25	RAF1 (ENSBIXG00005004450) #26	TMEM40 (ENSBIXG00005026020) #28	CAND2 (ENSBIXG00005025955) #29	RPL32 (ENSBIXG00005025898) ##30	MBD4 (ENSBIXG00005025831)	IFT122 (ENSBIXG00005025735)	RHO (ENSBIXG00005025616)	ENSBIXG00005025593	PLXND1 (ENSBIXG00005025560)	TMCC1 (ENSBIXG00005025216)	ENSBIXG00005025137	ENSBIXG00005025108	TRH (ENSBIXG00005025098)
Cow	MODERN SPECIES	14	CHCHD4 (ENSBTAG00000015529) #36	TMEM43 (ENSBTAG00000007360) #37	XPC (ENSBTAG00000007362)	LSM3 (ENSBTAG00000007363)	SLC6A6 (ENSBTAG00000011088)	GRIP2 (ENSBTAG00000011896)	CCDC174 (ENSBTAG00000038298)	C22H3orf20 (ENSBTAG00000040133)	FGD5 (ENSBTAG00000006789)	NR2C2 (ENSBTAG00000013716)	MRPS25 (ENSBTAG00000013723)	RBSN (ENSBTAG00000013725)	ENSBTAG00000031115	TIMP4 (ENSBTAG00000020263) #21	SYN2 (ENSBTAG00000020260) #20	PPARG (ENSBTAG00000001333) #22	TSEN2 (ENSBTAG00000037980) #23	MKRN2OS (ENSBTAG00000024991) #24	MKRN2 (ENSBTAG00000004512) #25	RAF1 (ENSBTAG00000045748) #26	TMEM40 (ENSBTAG00000000161) #28	CAND2 (ENSBTAG00000015273) #29	RPL32 (ENSBTAG00000015283) ##30	EFCAB12 (ENSBTAG00000021643)	MBD4 (ENSBTAG00000021645)	IFT122 (ENSBTAG00000019121)	RHO (ENSBTAG00000001310)	H1-8 (ENSBTAG00000001812)	PLXND1 (ENSBTAG00000001814)	TMCC1 (ENSBTAG00000006614)	TRH (ENSBTAG00000005306)
Bos_a	ANCESTRAL SPECIES	9	ENSGT01030000234553.b.b.d.c.b.e	ENSGT00390000013132 #36	ENSGT00390000009671 #37	ENSGT00390000005194	ENSGT00390000013951	ENSGT00940000154583	ENSGT00940000155615	ENSGT00440000033958	ENSGT00940000153655.B	ENSGT00940000157922	ENSGT00940000158393	ENSGT00640000091558	ENSGT00390000007159	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000003839 #24	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00390000017530 #28	ENSGT00390000017740.a.b #29	ENSGT00940000153973.d ##30	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT00940000175447	ENSGT00930000152979	ENSGT00940000155189	ENSGT00390000016951
Wild yak	MODERN SPECIES	1473														ENSBMUG00000011252 #21	SYN2 (ENSBMUG00000011214) #20	PPARG (ENSBMUG00000011177) #22	MKRN2OS (ENSBMUG00000011070) #24	MKRN2 (ENSBMUG00000011049) #25	RAF1 (ENSBMUG00000011029) #26	ENSBMUG00000010983	TMEM40 (ENSBMUG00000010953) #28	CAND2 (ENSBMUG00000010855) #29	RPL32 (ENSBMUG00000010768) ##30	EFCAB12 (ENSBMUG00000010745)	MBD4 (ENSBMUG00000010711)	IFT122 (ENSBMUG00000010042)	RHO (ENSBMUG00000009767)	ENSBMUG00000009729	ENSBMUG00000009719	TMCC1 (ENSBMUG00000009638)	ENSBMUG00000009609
Domestic yak	MODERN SPECIES	14	ENSBGRG00000018493	CHCHD4 (ENSBGRG00000018588) #36	TMEM43 (ENSBGRG00000018668) #37	XPC (ENSBGRG00000018846)	ENSBGRG00000019432	SLC6A6 (ENSBGRG00000019545)	GRIP2 (ENSBGRG00000020144)	CCDC174 (ENSBGRG00000021048)	C3orf20 (ENSBGRG00000021321)	FGD5 (ENSBGRG00000021386)	NR2C2 (ENSBGRG00000021614)	MRPS25 (ENSBGRG00000021676)	RBSN (ENSBGRG00000021762)	SYN2 (ENSBGRG00000021920) #20	TIMP4 (ENSBGRG00000022226) #21	ENSBGRG00000022315 #22	MKRN2OS (ENSBGRG00000022696) #24	MKRN2 (ENSBGRG00000022735) #25	RAF1 (ENSBGRG00000022891) #26	TMEM40 (ENSBGRG00000023210) #28	CAND2 (ENSBGRG00000023333) #29	RPL32 (ENSBGRG00000023548) ##30	EFCAB12 (ENSBGRG00000023675)	MBD4 (ENSBGRG00000023851)	IFT122 (ENSBGRG00000023990)	RHO (ENSBGRG00000024373)	ENSBGRG00000024409	ENSBGRG00000024437	ENSBGRG00000024462	TMCC1 (ENSBGRG00000024493)	ENSBGRG00000024583
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00940000158273 #22
Common shrew	MODERN SPECIES	2150																PPARG (ENSSARG00000009808) #22
Hedgehog	MODERN SPECIES	2893																PPARG (ENSEEUG00000006334) #22
Atlantogenata	ANCESTRAL SPECIES	34	ENSGT00390000011082	ENSGT00390000014353	ENSGT00940000159835	ENSGT00940000155616	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00390000017530 #28	ENSGT00390000017740.a.b #29	ENSGT00940000153973.c.a.a ##30	ENSGT00940000153973.c.a.b.b ##30	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189
Xenarthra	ANCESTRAL SPECIES	662														ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00390000017740.a.b #29
Armadillo	MODERN SPECIES	1334														SYN2 (ENSDNOG00000012852) #20	TIMP4 (ENSDNOG00000012868) #21	PPARG (ENSDNOG00000018641) #22	TSEN2 (ENSDNOG00000038504) #23	MKRN2OS (ENSDNOG00000042709) #24	ENSDNOG00000017476 #25	RAF1 (ENSDNOG00000009252) #26	CAND2 (ENSDNOG00000040049) #29
Sloth	MODERN SPECIES	2493																PPARG (ENSCHOG00000007152) #22
Afrotheria	ANCESTRAL SPECIES	32	ENSGT00390000016970	ENSGT00390000000631	ENSGT00390000011082	ENSGT00390000014353	ENSGT00940000159835	ENSGT00940000155616	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00390000017530 #28	ENSGT00390000017740.a.b #29	ENSGT00940000153973.c.a.a ##30	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951	ENSGT00390000007159
Afrotheria_a	ANCESTRAL SPECIES	32	ENSGT00390000011082	ENSGT00390000014353	ENSGT00940000159835	ENSGT00940000155616	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00390000017530 #28	ENSGT00390000017740.a.b #29	ENSGT00940000153973.c.a.a ##30	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951	ENSGT00390000007159
Elephant	MODERN SPECIES	49	BRK1 (ENSLAFG00000011665)	ENSLAFG00000016353	IRAK2 (ENSLAFG00000002546)	TATDN2 (ENSLAFG00000028812)	GHRL (ENSLAFG00000014068)	SEC13 (ENSLAFG00000014598)	ATP2B2 (ENSLAFG00000014604)	SLC6A11 (ENSLAFG00000016494)	SLC6A1 (ENSLAFG00000022374)	HRH1 (ENSLAFG00000017128)	ATG7 (ENSLAFG00000017130)	VGLL4 (ENSLAFG00000017133)	TAMM41 (ENSLAFG00000011239)	TIMP4 (ENSLAFG00000004660) #21	SYN2 (ENSLAFG00000004657) #20	PPARG (ENSLAFG00000030870) #22	TSEN2 (ENSLAFG00000009300) #23	MKRN2 (ENSLAFG00000011601) #25	RAF1 (ENSLAFG00000011608) #26	TMEM40 (ENSLAFG00000010230) #28	CAND2 (ENSLAFG00000017706) #29	ENSLAFG00000032737 ##30	EFCAB12 (ENSLAFG00000010605)	MBD4 (ENSLAFG00000010609)	IFT122 (ENSLAFG00000010612)	RHO (ENSLAFG00000001359)	PLXND1 (ENSLAFG00000003012)	TMCC1 (ENSLAFG00000013730)	TRH (ENSLAFG00000015165)	RBSN (ENSLAFG00000004227)	MRPS25 (ENSLAFG00000022178)
Hyrax	MODERN SPECIES	10291																PPARG (ENSPCAG00000001034) #22
Tenrec	MODERN SPECIES	2807																PPARG (ENSETEG00000001775) #22
Marsupialia	ANCESTRAL SPECIES	14	ENSGT00390000014353	ENSGT00940000159835	ENSGT00940000155616	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00940000160690	ENSGT00940000154650.d.g.b.a.a.a.b	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00390000017530 #28	ENSGT00390000017740.a.b #29	ENSGT00940000153973 #30	ENSGT00390000014874	ENSGT00530000063687.a.a	ENSGT00530000063687.a.b	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189
Marsupialia_b	ANCESTRAL SPECIES	14	ENSGT00390000014353	ENSGT00940000159835	ENSGT00940000155616	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00940000160690	ENSGT00940000154650.d.g.b.a.a.a.b	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00390000017530 #28	ENSGT00390000017740.a.b #29	ENSGT00940000153973 #30	ENSGT00390000014874	ENSGT00530000063687.a.a	ENSGT00530000063687.a.b	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189
Diprotodontia	ANCESTRAL SPECIES	12	ENSGT00390000014353	ENSGT00940000159835	ENSGT00940000155616	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00940000160690	ENSGT00940000154650.d.g.b.a.a.a.b	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00390000017530 #28	ENSGT00390000017740.a.b #29	ENSGT00940000153973 #30	ENSGT00390000014874	ENSGT00530000063687.a.a	ENSGT00530000063687.a.b	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951
Diprotodontia_a	ANCESTRAL SPECIES	10	ENSGT00390000014353	ENSGT00940000159835	ENSGT00940000155616	ENSGT00390000004064	ENSGT00940000153393.B	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00940000160690	ENSGT00940000154650.d.g.b.a.a.a.b	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00390000017530 #28	ENSGT00390000017740.a.b #29	ENSGT00940000153973 #30	ENSGT00390000014874	ENSGT00530000063687.a.a	ENSGT00530000063687.a.b	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951
Common wonbat	MODERN SPECIES	1012	ENSVURG00010011465	IRAK2 (ENSVURG00010011479)	TATDN2 (ENSVURG00010011558)	GHRL (ENSVURG00010011569)	ENSVURG00010011601	SLC6A11 (ENSVURG00010011698)	ENSVURG00010011722	SLC6A1 (ENSVURG00010011767)	HRH1 (ENSVURG00010012968)	ATG7 (ENSVURG00010012989)	VGLL4 (ENSVURG00010013026)	TAMM41 (ENSVURG00010013046)	ENSVURG00010013071 #20	TIMP4 (ENSVURG00010013076) #21	ENSVURG00010013080 #20	PPARG (ENSVURG00010013093) #22	TSEN2 (ENSVURG00010013138) #23	MKRN2OS (ENSVURG00010013158) #24	MKRN2 (ENSVURG00010013169) #25	RAF1 (ENSVURG00010013196) #26	TMEM40 (ENSVURG00010013215) #28	CAND2 (ENSVURG00010013279) #29	ENSVURG00010014192 #30	ENSVURG00010014212	ENSVURG00010014225	IFT122 (ENSVURG00010014263)	RHO (ENSVURG00010014434)	PLXND1 (ENSVURG00010014456)	TMCC1 (ENSVURG00010014518)	RBSN (ENSVURG00010014533)	MRPS25 (ENSVURG00010014548)
koala	MODERN SPECIES	10	ENSPCIG00000032547	IRAK2 (ENSPCIG00000021915)	ENSPCIG00000021916	GHRL (ENSPCIG00000021917)	ENSPCIG00000021918	ATP2B2 (ENSPCIG00000024350)	SLC6A11 (ENSPCIG00000011028)	SLC6A1 (ENSPCIG00000011049)	HRH1 (ENSPCIG00000011053)	ENSPCIG00000011056	ATG7 (ENSPCIG00000011062)	VGLL4 (ENSPCIG00000011097)	TAMM41 (ENSPCIG00000036857)	SYN2 (ENSPCIG00000002007) #20	TIMP4 (ENSPCIG00000002040) #21	PPARG (ENSPCIG00000002060) #22	TSEN2 (ENSPCIG00000002191) #23	MKRN2OS (ENSPCIG00000002201) #24	MKRN2 (ENSPCIG00000031653) #25	RAF1 (ENSPCIG00000009694) #26	TMEM40 (ENSPCIG00000002215) #28	CAND2 (ENSPCIG00000002229) #29	RPL32 (ENSPCIG00000036095) #30	ENSPCIG00000002263	ENSPCIG00000002276	ENSPCIG00000035263	IFT122 (ENSPCIG00000002304)	RHO (ENSPCIG00000002359)	PLXND1 (ENSPCIG00000002459)	TMCC1 (ENSPCIG00000002496)	ENSPCIG00000023527
Wallaby	MODERN SPECIES	3764																PPARG (ENSMEUG00000007824) #22
Tasmanian devil	MODERN SPECIES		IRAK2 (ENSSHAG00000016281)	TATDN2 (ENSSHAG00000016457)	GHRL (ENSSHAG00000021643)	SEC13 (ENSSHAG00000016558)	ENSSHAG00000017272	SLC6A11 (ENSSHAG00000026964)	ENSSHAG00000018140	HRH1 (ENSSHAG00000028397)	ATG7 (ENSSHAG00000022602)	ENSSHAG00000031478	ENSSHAG00000027506	ENSSHAG00000018702	TAMM41 (ENSSHAG00000018802)	SYN2 (ENSSHAG00000006422) #20	TIMP4 (ENSSHAG00000006738) #21	PPARG (ENSSHAG00000008610) #22	TSEN2 (ENSSHAG00000010530) #23	MKRN2OS (ENSSHAG00000010787) #24	ENSSHAG00000011021 #25	RAF1 (ENSSHAG00000011099) #26	TMEM40 (ENSSHAG00000012194) #28	CAND2 (ENSSHAG00000012567) #29	ENSSHAG00000012782 #30	ENSSHAG00000012822	MBD4 (ENSSHAG00000012953)	IFT122 (ENSSHAG00000013078)	RHO (ENSSHAG00000013534)	ENSSHAG00000029482	PLXND1 (ENSSHAG00000013651)	TMCC1 (ENSSHAG00000014733)	ENSSHAG00000026312
Opossum	MODERN SPECIES	5	ENSMODG00000028514	IRAK2 (ENSMODG00000005480)	TATDN2 (ENSMODG00000005496)	ENSMODG00000039480	SEC13 (ENSMODG00000005505)	ATP2B2 (ENSMODG00000005537)	SLC6A11 (ENSMODG00000005602)	SLC6A1 (ENSMODG00000005984)	HRH1 (ENSMODG00000006000)	ENSMODG00000006043	ATG7 (ENSMODG00000006136)	VGLL4 (ENSMODG00000006145)	ENSMODG00000006153	SYN2 (ENSMODG00000006159) #20	TIMP4 (ENSMODG00000006199) #21	PPARG (ENSMODG00000006233) #22	TSEN2 (ENSMODG00000006249) #23	MKRN2OS (ENSMODG00000006265) #24	MKRN2 (ENSMODG00000006280) #25	RAF1 (ENSMODG00000006307) #26	ENSMODG00000025518 #28	CAND2 (ENSMODG00000006377) #29	RPL32 (ENSMODG00000037211) #30	ENSMODG00000006335	ENSMODG00000006399	ENSMODG00000042737	IFT122 (ENSMODG00000006462)	RHO (ENSMODG00000006488)	ENSMODG00000028422	PLXND1 (ENSMODG00000006963)	TMCC1 (ENSMODG00000006987)
Platypus	MODERN SPECIES	83				ENSOANG00000043679	ENSOANG00000036327	MKNK2 (ENSOANG00000048798)	MOB3A (ENSOANG00000040976)	ENSOANG00000050388	DOT1L (ENSOANG00000010015)	ENSOANG00000036300	OAZ1 (ENSOANG00000000654)	ENSOANG00000030064	LINGO3 (ENSOANG00000003705)	SEMA3G (ENSOANG00000013236)	SYN2 (ENSOANG00000020050) #20	PPARG (ENSOANG00000046286) #22	ISY1 (ENSOANG00000013141)	ENSOANG00000045625	RAF1 (ENSOANG00000005684) #26	MKRN2 (ENSOANG00000038817) #25	MKRN2OS (ENSOANG00000039177) #24	ENSOANG00000011648 #23	CIAO2B (ENSOANG00000045690)	RRAD (ENSOANG00000013935)	ENSOANG00000042386	PDP2 (ENSOANG00000015274)	CA7 (ENSOANG00000012209)	ENSOANG00000031931	ENSOANG00000029079	ENSOANG00000030783	ENSOANG00000032301
Sauria	ANCESTRAL SPECIES	13	ENSGT00940000160986	ENSGT00940000157238	ENSGT00390000011897	ENSGT00390000004860	ENSGT00620000089227	ENSGT00550000074921	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00950000183041.A	ENSGT00390000014109.d	ENSGT00940000164112.a	ENSGT00940000161980	ENSGT00530000064244.a	ENSGT00950000183014.f.b.a.b	ENSGT00940000163561	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #31	ENSGT00390000009491.d #32
Archelosauria	ANCESTRAL SPECIES	17	ENSGT00940000160986	ENSGT00940000157238	ENSGT00390000011897	ENSGT00390000004860	ENSGT00620000089227	ENSGT00550000074921	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00950000183041.A	ENSGT00390000014109.d	ENSGT00940000164112.a	ENSGT00940000161980	ENSGT00530000064244.a	ENSGT00940000163561	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #31	ENSGT00390000009491.d #32	ENSGT00940000156308 #33
Cryptodira	ANCESTRAL SPECIES	41	ENSGT00940000157444	ENSGT00940000160986	ENSGT00940000157238	ENSGT00390000011897	ENSGT00390000004860	ENSGT00550000074921	ENSGT00940000161461	ENSGT00940000157569.b	ENSGT00940000156027	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00950000183041.A	ENSGT00390000014109.d	ENSGT00940000164112.a	ENSGT00940000161980	ENSGT00530000064244.a	ENSGT00950000183014.f.b.a.b	ENSGT00940000163561	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #31	ENSGT00390000009491.d #32
Testudinoidea	ANCESTRAL SPECIES	2	ENSGT00940000157444	ENSGT00940000160986	ENSGT00940000157238	ENSGT00390000011897	ENSGT00390000004860.nb	ENSGT00550000074921	ENSGT00940000161461	ENSGT00940000157569.b	ENSGT00940000156027	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00950000183041.A	ENSGT00390000014109.d	ENSGT00940000164112.a	ENSGT00940000161980	ENSGT00530000064244.a	ENSGT00950000183014.f.b.a.b	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #31	ENSGT00390000009491.d #32	ENSGT00940000156308 #33
Emydidae	ANCESTRAL SPECIES	9	ENSGT00940000157444	ENSGT00940000160986	ENSGT00940000157238	ENSGT00390000011897	ENSGT00390000004860.nb	ENSGT00550000074921	ENSGT00940000161461	ENSGT00940000157569.b	ENSGT00940000156027	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00950000183041.A	ENSGT00390000014109.d	ENSGT00940000164112.a	ENSGT00940000161980	ENSGT00530000064244.a	ENSGT00950000183014.f.b.a.b	ENSGT00940000163561	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #31	ENSGT00390000009491.d #32
Three-toed box turtle	MODERN SPECIES	107	OMD (ENSTMTG00000017048)	OGN (ENSTMTG00000017031)	CENPP (ENSTMTG00000017017)	ENSTMTG00000016992	ENSTMTG00000016954	IARS1 (ENSTMTG00000016725)	ENSTMTG00000016217	SLC6A11 (ENSTMTG00000016054)	SLC6A1 (ENSTMTG00000015874)	HRH1 (ENSTMTG00000015850)	ATG7 (ENSTMTG00000015759)	VGLL4 (ENSTMTG00000015729)	TAMM41 (ENSTMTG00000015707)	TIMP4 (ENSTMTG00000015688) #21	SYN2 (ENSTMTG00000015621) #20	PPARG (ENSTMTG00000015596) #22	TSEN2 (ENSTMTG00000015573) #23	ENSTMTG00000015561	MKRN2 (ENSTMTG00000015544) #25	RAF1 (ENSTMTG00000015520) #26	ENSTMTG00000015505	ISY1 (ENSTMTG00000015483)	ENSTMTG00000015448	RAB43 (ENSTMTG00000015431)	GP9 (ENSTMTG00000010971)	EFCC1 (ENSTMTG00000010945)	CFAP92 (ENSTMTG00000010898)	ACAD9 (ENSTMTG00000010840)	IQSEC1 (ENSTMTG00000010796) #31
painted turtle	MODERN SPECIES	14		OMD (ENSCPBG00000006794)	OGN (ENSCPBG00000006790)	CENPP (ENSCPBG00000006781)	NOL8 (ENSCPBG00000006773)	IARS1 (ENSCPBG00000001174)	ENSCPBG00000000579	SLC6A11 (ENSCPBG00000000487)	ENSCPBG00000000450	SLC6A1 (ENSCPBG00000000431)	HRH1 (ENSCPBG00000000415)	ATG7 (ENSCPBG00000000334)	TAMM41 (ENSCPBG00000000254)	TIMP4 (ENSCPBG00000026368) #21	SYN2 (ENSCPBG00000026365) #20	PPARG (ENSCPBG00000026361) #22	TSEN2 (ENSCPBG00000026359) #23	MKRN2OS (ENSCPBG00000026357) #24	MKRN2 (ENSCPBG00000026356) #25	RAF1 (ENSCPBG00000026352) #26	ENSCPBG00000026349	ENSCPBG00000026348	ISY1 (ENSCPBG00000026346)	ENSCPBG00000026344	RAB43 (ENSCPBG00000026343)	ENSCPBG00000026342
Testudinidae	ANCESTRAL SPECIES	5	ENSGT00940000157444	ENSGT00940000160986	ENSGT00940000157238	ENSGT00390000011897	ENSGT00390000004860.nb.c	ENSGT00550000074921	ENSGT00940000161461	ENSGT00940000157569.b	ENSGT00940000156027	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00950000183041.A	ENSGT00390000014109.c.b	ENSGT00940000167251	ENSGT00390000014109.d	ENSGT00940000164112.a	ENSGT00940000161980	ENSGT00530000064244.a	ENSGT00950000183014.f.b.a.b	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #31
Abingdon island giant tortoise	MODERN SPECIES	252														TIMP4 (ENSCABG00000022127) #21	SYN2 (ENSCABG00000022126) #20	PPARG (ENSCABG00000022125) #22	ENSCABG00000022124	TSEN2 (ENSCABG00000022123) #23	ENSCABG00000022122	MKRN2 (ENSCABG00000022121) #25	RAF1 (ENSCABG00000022083) #26
Goode s thornscrub tortoise	MODERN SPECIES	21	OMD (ENSGEVG00005015011)	OGN (ENSGEVG00005015045)	CENPP (ENSGEVG00005015104)	ENSGEVG00005015160	ENSGEVG00005015198	IARS1 (ENSGEVG00005015240)	ATP2B2 (ENSGEVG00005015471)	SLC6A11 (ENSGEVG00005017116)	SLC6A1 (ENSGEVG00005017316)	HRH1 (ENSGEVG00005017663)	ATG7 (ENSGEVG00005017701)	VGLL4 (ENSGEVG00005017769)	TAMM41 (ENSGEVG00005017797)	SYN2 (ENSGEVG00005017832) #20	TIMP4 (ENSGEVG00005017900) #21	PPARG (ENSGEVG00005017941) #22	TSEN2 (ENSGEVG00005017977) #23	MKRN2OS (ENSGEVG00005017994) #24	MKRN2 (ENSGEVG00005018003) #25	RAF1 (ENSGEVG00005018027) #26	ENSGEVG00005018078	ENSGEVG00005005307	ENSGEVG00005005367	ENSGEVG00005005430	RAB43 (ENSGEVG00005005485)	GP9 (ENSGEVG00005005510)	ENSGEVG00005005535	ENSGEVG00005005602	ACAD9 (ENSGEVG00005005630)	IQSEC1 (ENSGEVG00005005708) #31	NUP210 (ENSGEVG00005005766) #32
Chinese turtle	MODERN SPECIES	660						ENSPSIG00000015446	ENSPSIG00000015328	ENSPSIG00000015319	USP4 (ENSPSIG00000014081)	HRH1 (ENSPSIG00000000512)	ATG7 (ENSPSIG00000012300)	VGLL4 (ENSPSIG00000012119)	TAMM41 (ENSPSIG00000012037)	TIMP4 (ENSPSIG00000011745) #21	SYN2 (ENSPSIG00000011238) #20	PPARG (ENSPSIG00000011100) #22	ENSPSIG00000010669 #23	MKRN2OS (ENSPSIG00000010665) #24	MKRN2 (ENSPSIG00000010483) #25	RAF1 (ENSPSIG00000009677) #26	ENSPSIG00000009556	ISY1 (ENSPSIG00000009384)
Archosauria	ANCESTRAL SPECIES	24	ENSGT00940000160986	ENSGT00940000157238	ENSGT00390000011897	ENSGT00390000004860	ENSGT00620000089227	ENSGT00550000074921	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00950000183041.A	ENSGT00390000014109.d	ENSGT00940000164112.a	ENSGT00940000161980	ENSGT00530000064244.a	ENSGT00940000163561	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #31	ENSGT00390000009491.d #32	ENSGT00940000156308 #33
Aves	ANCESTRAL SPECIES	29	ENSGT00940000160986	ENSGT00940000157238	ENSGT00390000011897	ENSGT00390000004860	ENSGT00620000089227	ENSGT00550000074921	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00950000183041.A	ENSGT00390000014109.d	ENSGT00940000164112.a	ENSGT00940000161980	ENSGT00530000064244.a	ENSGT00940000163561	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #31	ENSGT00390000009491.d #32	ENSGT00940000156308 #33
Neognathae	ANCESTRAL SPECIES	27	ENSGT00940000160986	ENSGT00940000157238	ENSGT00390000011897	ENSGT00390000004860	ENSGT00620000089227	ENSGT00550000074921	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00950000183041.A	ENSGT00390000014109.d	ENSGT00940000164112.a	ENSGT00940000161980	ENSGT00530000064244.a	ENSGT00940000163561	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #31	ENSGT00390000009491.d #32	ENSGT00940000156308 #33
Galloanserae	ANCESTRAL SPECIES	26	ENSGT00940000160986	ENSGT00940000157238	ENSGT00390000011897	ENSGT00390000004860	ENSGT00620000089227	ENSGT00550000074921	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00950000183041.A	ENSGT00390000014109.d	ENSGT00940000164112.a	ENSGT00940000161980	ENSGT00530000064244.a	ENSGT00940000163561	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #31	ENSGT00390000009491.d #32	ENSGT00940000156308 #33
Anatidae	ANCESTRAL SPECIES	54	ENSGT00940000157444	ENSGT00940000160986	ENSGT00940000157238	ENSGT00390000011897	ENSGT00390000004860	ENSGT00550000074921	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT01030000235208	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00950000183041.A	ENSGT00390000014109.d	ENSGT00940000164112.a	ENSGT00940000161980	ENSGT00530000064244.a	ENSGT00950000183014.f.b.a.b	ENSGT00940000163561	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #31	ENSGT00390000009491.d #32
Pink-footed goose	MODERN SPECIES	110										HRH1 (ENSABRG00000009830)	ATG7 (ENSABRG00000009797)	VGLL4 (ENSABRG00000009786)	TAMM41 (ENSABRG00000009773)	TIMP4 (ENSABRG00000009748) #21	SYN2 (ENSABRG00000009741) #20	PPARG (ENSABRG00000009733) #22	TSEN2 (ENSABRG00000009724) #23	ENSABRG00000009722	MKRN2 (ENSABRG00000009708) #25	RAF1 (ENSABRG00000009695) #26	ENSABRG00000009679	ISY1 (ENSABRG00000009673)	ENSABRG00000009510	RAB43 (ENSABRG00000009489)	GP9 (ENSABRG00000009470)	EFCC1 (ENSABRG00000009460)	CFAP92 (ENSABRG00000009441)	ACAD9 (ENSABRG00000008890)	IQSEC1 (ENSABRG00000008262) #31	NUP210 (ENSABRG00000007910) #32	HDAC11 (ENSABRG00000007799) #33
Duck	MODERN SPECIES	4	NOL8 (ENSAPLG00000005526)	IARS1 (ENSAPLG00000005750)	ENSAPLG00000023001	ENSAPLG00000030112	ATP2B2 (ENSAPLG00000006083)	SLC6A11 (ENSAPLG00000006803)	SLC6A1 (ENSAPLG00000010815)	ENSAPLG00000024336	HRH1 (ENSAPLG00000011710)	ATG7 (ENSAPLG00000010216)	VGLL4 (ENSAPLG00000010053)	TAMM41 (ENSAPLG00000009828)	ENSAPLG00000028592	TIMP4 (ENSAPLG00000027938) #21	SYN2 (ENSAPLG00000009144) #20	PPARG (ENSAPLG00000009031) #22	ENSAPLG00000014992 #23	ENSAPLG00000017751	MKRN2 (ENSAPLG00000014833) #25	RAF1 (ENSAPLG00000014376) #26	ENSAPLG00000014227	ISY1 (ENSAPLG00000014136)	RAB43 (ENSAPLG00000026304)	GP9 (ENSAPLG00000001853)	ENSAPLG00000013971	ENSAPLG00000013916	ACAD9 (ENSAPLG00000013493)	IQSEC1 (ENSAPLG00000013323) #31	NUP210 (ENSAPLG00000012355) #32	HDAC11 (ENSAPLG00000012032) #33	FBLN2 (ENSAPLG00000014027) #34
Phasianidae	ANCESTRAL SPECIES	16	ENSGT00940000157444	ENSGT00940000160986	ENSGT00940000157238	ENSGT00390000004860	ENSGT00620000089227	ENSGT00550000074921	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00950000183041.A	ENSGT00390000014109.d	ENSGT00940000164112.a	ENSGT00940000161980	ENSGT00530000064244.a	ENSGT00940000163561	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #31	ENSGT00390000009491.d #32	ENSGT00940000156308 #33
Phasianidae_b	ANCESTRAL SPECIES	16	ENSGT00940000160986	ENSGT00940000157238	ENSGT00390000011897	ENSGT00390000004860	ENSGT00620000089227	ENSGT00550000074921	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00950000183041.A	ENSGT00390000014109.d	ENSGT00940000164112.a	ENSGT00940000161980	ENSGT00530000064244.a	ENSGT00940000163561	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #31	ENSGT00390000009491.d #32	ENSGT00940000156308 #33
Chicken	MODERN SPECIES	3	OMD (ENSGALG00010027204)	OGN (ENSGALG00010027205)	CENPP (ENSGALG00010027195)	NOL8 (ENSGALG00010027207)	ENSGALG00010028201	IARS1 (ENSGALG00010027218)	ATP2B2 (ENSGALG00010027231)	SLC6A11 (ENSGALG00010027234)	SLC6A1 (ENSGALG00010027240)	HRH1 (ENSGALG00010027243)	ATG7 (ENSGALG00010027247)	VGLL4 (ENSGALG00010027253)	TAMM41 (ENSGALG00010027263)	SYN2 (ENSGALG00010027905) #20	TIMP4 (ENSGALG00010027909) #21	PPARG (ENSGALG00010027917) #22	TSEN2 (ENSGALG00010027919) #23	MKRN2OS (ENSGALG00010027921) #24	MKRN2 (ENSGALG00010027925) #25	RAF1 (ENSGALG00010027930) #26	CNBP (ENSGALG00010027934)	ISY1 (ENSGALG00010027935)	ENSGALG00010027938	RAB43 (ENSGALG00010027943)	GP9 (ENSGALG00010027947)	ENSGALG00010027958	CFAP92 (ENSGALG00010027954)	ACAD9 (ENSGALG00010027965)	IQSEC1 (ENSGALG00010027975) #31	NUP210 (ENSGALG00010027980) #32	HDAC11 (ENSGALG00010027988) #33
Turkey	MODERN SPECIES	5	OMD (ENSMGAG00000004463)	OGN (ENSMGAG00000004478)	NOL8 (ENSMGAG00000004495)	IARS1 (ENSMGAG00000004555)	ENSMGAG00000004661	SLC6A11 (ENSMGAG00000004717)	SLC6A1 (ENSMGAG00000004819)	HRH1 (ENSMGAG00000004868)	ATG7 (ENSMGAG00000004873)	ENSMGAG00000019207	VGLL4 (ENSMGAG00000004921)	TAMM41 (ENSMGAG00000004937)	ENSMGAG00000021149	SYN2 (ENSMGAG00000004944) #20	TIMP4 (ENSMGAG00000004964) #21	PPARG (ENSMGAG00000004981) #22	TSEN2 (ENSMGAG00000005015) #23	MKRN2 (ENSMGAG00000005057) #25	RAF1 (ENSMGAG00000005082) #26	ENSMGAG00000005152	ISY1 (ENSMGAG00000005181)	ENSMGAG00000005131	ENSMGAG00000005141	GP9 (ENSMGAG00000015506)	ENSMGAG00000005211	ACAD9 (ENSMGAG00000005216)	IQSEC1 (ENSMGAG00000005294) #31	NUP210 (ENSMGAG00000005324) #32	HDAC11 (ENSMGAG00000005351) #33	FBLN2 (ENSMGAG00000005381) #34	WNT7A (ENSMGAG00000005423) #35
Japanese quail	MODERN SPECIES	3	ECM2 (ENSCJPG00005012244)	ASPN (ENSCJPG00005012245)	OMD (ENSCJPG00005012246)	OGN (ENSCJPG00005012247)	ENSCJPG00005012248	IARS1 (ENSCJPG00005012250)	ENSCJPG00005012303	SLC6A11 (ENSCJPG00005012307)	SLC6A1 (ENSCJPG00005012319)	HRH1 (ENSCJPG00005012860)	ATG7 (ENSCJPG00005012861)	VGLL4 (ENSCJPG00005012862)	TAMM41 (ENSCJPG00005012865)	SYN2 (ENSCJPG00005012866) #20	TIMP4 (ENSCJPG00005012867) #21	PPARG (ENSCJPG00005012868) #22	TSEN2 (ENSCJPG00005012869) #23	MKRN2 (ENSCJPG00005012870) #25	MKRN2OS (ENSCJPG00005012871) #24	RAF1 (ENSCJPG00005012872) #26	ENSCJPG00005012873	ISY1 (ENSCJPG00005012874)	ENSCJPG00005012875	RAB43 (ENSCJPG00005012876)	GP9 (ENSCJPG00005012877)	ENSCJPG00005012878	ENSCJPG00005012879	ACAD9 (ENSCJPG00005012880)	IQSEC1 (ENSCJPG00005012881) #31	NUP210 (ENSCJPG00005012882) #32	HDAC11 (ENSCJPG00005012883) #33
Neognathae_b	ANCESTRAL SPECIES	18	ENSGT00940000160986	ENSGT00940000157238	ENSGT00390000011897	ENSGT00390000004860	ENSGT00620000089227	ENSGT00550000074921	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00950000183041.A	ENSGT00390000014109.d	ENSGT00940000164112.a	ENSGT00940000161980	ENSGT00530000064244.a	ENSGT00940000163561	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #31	ENSGT00390000009491.d #32	ENSGT00940000156308 #33
Passeriformes	ANCESTRAL SPECIES	16	ENSGT00940000160986	ENSGT00940000157238	ENSGT00390000011897	ENSGT00390000004860	ENSGT00950000182865.b.b.b.c.a	ENSGT00550000074921	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00950000183041.A	ENSGT00390000014109.d	ENSGT00940000164112.a	ENSGT00940000161980	ENSGT00530000064244.a	ENSGT00940000163561	ENSGT00940000157312	ENSGT00940000156915 #31	ENSGT00390000009491.d #32	ENSGT00940000156308 #33	ENSGT00940000156047 #34
Great tit	MODERN SPECIES	3	FAM120A (ENSPMJG00000004272)	PHF2 (ENSPMJG00000004299)	BARX1 (ENSPMJG00000004323)	PTPDC1 (ENSPMJG00000004327)	IARS1 (ENSPMJG00000004334)	ATP2B2 (ENSPMJG00000004350)	SLC6A11 (ENSPMJG00000004374)	SLC6A1 (ENSPMJG00000004995)	HRH1 (ENSPMJG00000005006)	ATG7 (ENSPMJG00000005007)	VGLL4 (ENSPMJG00000005038)	TAMM41 (ENSPMJG00000005039)	ENSPMJG00000005042 #20	TIMP4 (ENSPMJG00000005043) #21	ENSPMJG00000005053 #20	PPARG (ENSPMJG00000005054) #22	TSEN2 (ENSPMJG00000005055) #23	MKRN2OS (ENSPMJG00000005056) #24	ENSPMJG00000005058 #25	RAF1 (ENSPMJG00000005061) #26	ENSPMJG00000005065	ENSPMJG00000005069	ISY1 (ENSPMJG00000005074)	ENSPMJG00000005079	RAB43 (ENSPMJG00000005081)	GP9 (ENSPMJG00000005082)	ENSPMJG00000005084	ENSPMJG00000005086	ENSPMJG00000005087	CENPP (ENSPMJG00000005088)	OGN (ENSPMJG00000005089)
Passeriformes_d	ANCESTRAL SPECIES	16	ENSGT00940000160986	ENSGT00940000157238	ENSGT00390000011897	ENSGT00390000004860	ENSGT00950000182865.b.b.b.c.a	ENSGT00550000074921	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00390000014300.p	ENSGT00950000183041.A	ENSGT00390000014109.d.b.a	ENSGT00940000164112.a	ENSGT00940000161980.f	ENSGT00530000064244.a	ENSGT00940000163561	ENSGT00940000157312	ENSGT00940000156915 #31	ENSGT00390000009491.d #32	ENSGT00940000156308 #33
Passeriformes_g	ANCESTRAL SPECIES	16	ENSGT00940000160986	ENSGT00940000157238	ENSGT00390000011897	ENSGT00390000004860	ENSGT00950000182865.b.b.b.c.a	ENSGT00550000074921	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00390000014300.p	ENSGT00950000183041.A	ENSGT00390000014109.d.b.a	ENSGT00940000164112.a	ENSGT00940000161980.f	ENSGT00530000064244.a	ENSGT00940000163561	ENSGT00940000157312	ENSGT00940000156915 #31	ENSGT00390000009491.d #32	ENSGT00940000156308 #33
Medium ground finch	MODERN SPECIES	321															SYN2 (ENSGFOG00000010635) #20	PPARG (ENSGFOG00000010112) #22	TSEN2 (ENSGFOG00000009700) #23	MKRN2 (ENSGFOG00000010465) #25	RAF1 (ENSGFOG00000010417) #26	ENSGFOG00000010404	ENSGFOG00000010397	ENSGFOG00000010387	ENSGFOG00000010368	RAB43 (ENSGFOG00000010361)	GP9 (ENSGFOG00000010358)
Passeroidea	ANCESTRAL SPECIES	16	ENSGT00940000160986	ENSGT00940000157238	ENSGT00390000011897	ENSGT00390000004860	ENSGT00950000182865.b.b.b.c.a	ENSGT00550000074921	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00390000014300.p	ENSGT00950000183041.A	ENSGT00390000014109.d.b.a	ENSGT00940000164112.a	ENSGT00940000161980.f	ENSGT00530000064244.a	ENSGT00940000163561	ENSGT00940000157312	ENSGT00940000156915 #31	ENSGT00390000009491.d #32	ENSGT00940000156308 #33
Zebra finch	MODERN SPECIES	3	PFKFB4 (ENSTGUG00000004588)	PRKCD (ENSTGUG00000004544)	ENSTGUG00000005422	ENSTGUG00000019357	IARS1 (ENSTGUG00000004410)	ATP2B2 (ENSTGUG00000004296)	SLC6A11 (ENSTGUG00000004225)	SLC6A1 (ENSTGUG00000004182)	HRH1 (ENSTGUG00000004180)	ATG7 (ENSTGUG00000004145)	VGLL4 (ENSTGUG00000004136)	TAMM41 (ENSTGUG00000004121)	SYN2 (ENSTGUG00000004093) #20	ENSTGUG00000025121	TIMP4 (ENSTGUG00000019602) #21	PPARG (ENSTGUG00000004069) #22	ENSTGUG00000025620	TSEN2 (ENSTGUG00000004044) #23	MKRN2OS (ENSTGUG00000028016) #24	MKRN2 (ENSTGUG00000004017) #25	RAF1 (ENSTGUG00000004006) #26	ENSTGUG00000004001	ENSTGUG00000003998	ENSTGUG00000003984	RAB43 (ENSTGUG00000021700)	GP9 (ENSTGUG00000003978)	ENSTGUG00000023307	ACAD9 (ENSTGUG00000003909)	IQSEC1 (ENSTGUG00000003876) #31	ENSTGUG00000003823 #32	ENSTGUG00000003803 #33
Common canary	MODERN SPECIES	15	ASPN (ENSSCAG00000012710)	OMD (ENSSCAG00000012707)	OGN (ENSSCAG00000012703)	CENPP (ENSSCAG00000012700)	ENSSCAG00000012697	IARS1 (ENSSCAG00000012686)	ATP2B2 (ENSSCAG00000012674)	SLC6A11 (ENSSCAG00000012356)	SLC6A1 (ENSSCAG00000011359)	HRH1 (ENSSCAG00000011131)	ATG7 (ENSSCAG00000011122)	VGLL4 (ENSSCAG00000011116)	TAMM41 (ENSSCAG00000011113)	TIMP4 (ENSSCAG00000011112) #21	SYN2 (ENSSCAG00000011108) #20	PPARG (ENSSCAG00000011103) #22	TSEN2 (ENSSCAG00000011099) #23	MKRN2OS (ENSSCAG00000011095) #24	MKRN2 (ENSSCAG00000011091) #25	RAF1 (ENSSCAG00000011068) #26	ENSSCAG00000011058	ENSSCAG00000011053	ISY1 (ENSSCAG00000011046)	ENSSCAG00000010990	RAB43 (ENSSCAG00000010955)	GP9 (ENSSCAG00000010953)	ENSSCAG00000010950	ENSSCAG00000010945	ENSSCAG00000010943	ACAD9 (ENSSCAG00000010788)	IQSEC1 (ENSSCAG00000010741) #31
Flycatcher	MODERN SPECIES	3	CENPP (ENSFALG00000024002)	NOL8 (ENSFALG00000009066)	ENSFALG00000009075	ENSFALG00000023030	IARS1 (ENSFALG00000010261)	ENSFALG00000000003	ENSFALG00000028800	SLC6A11 (ENSFALG00000000004)	SLC6A1 (ENSFALG00000000005)	HRH1 (ENSFALG00000014152)	ATG7 (ENSFALG00000000006)	VGLL4 (ENSFALG00000000007)	TAMM41 (ENSFALG00000000008)	TIMP4 (ENSFALG00000023921) #21	SYN2 (ENSFALG00000000009) #20	PPARG (ENSFALG00000028484) #22	TSEN2 (ENSFALG00000000012) #23	MKRN2 (ENSFALG00000000015) #25	RAF1 (ENSFALG00000000018) #26	ENSFALG00000014288	ENSFALG00000025948	ENSFALG00000000023	ENSFALG00000000024	ENSFALG00000028736	ENSFALG00000000026	ENSFALG00000000031	IQSEC1 (ENSFALG00000000034) #31	NUP210 (ENSFALG00000000036) #32	HDAC11 (ENSFALG00000023220) #33	ENSFALG00000026076	FBLN2 (ENSFALG00000009172) #34
Neognathae_c	ANCESTRAL SPECIES	21	ENSGT00940000160986	ENSGT00940000157238	ENSGT00390000011897	ENSGT00390000004860	ENSGT00620000089227	ENSGT00550000074921	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00950000183041.A	ENSGT00390000014109.d	ENSGT00940000164112.a	ENSGT00940000161980	ENSGT00530000064244.a	ENSGT00940000163561	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #31	ENSGT00390000009491.d #32	ENSGT00940000156308 #33
Kakapo	MODERN SPECIES	3	OGN (ENSSHBG00005010777)	CENPP (ENSSHBG00005010756)	ENSSHBG00005010716	ENSSHBG00005010656	ENSSHBG00005010633	IARS1 (ENSSHBG00005009904)	ATP2B2 (ENSSHBG00005009663)	SLC6A11 (ENSSHBG00005009639)	SLC6A1 (ENSSHBG00005009619)	HRH1 (ENSSHBG00005009603)	ATG7 (ENSSHBG00005008229)	VGLL4 (ENSSHBG00005008062)	TAMM41 (ENSSHBG00005008045)	TIMP4 (ENSSHBG00005008034) #21	SYN2 (ENSSHBG00005008017) #20	PPARG (ENSSHBG00005008004) #22	TSEN2 (ENSSHBG00005007982) #23	MKRN2OS (ENSSHBG00005007967) #24	MKRN2 (ENSSHBG00005007960) #25	RAF1 (ENSSHBG00005007932) #26	ENSSHBG00005007914	ISY1 (ENSSHBG00005007896)	ENSSHBG00005007853	RAB43 (ENSSHBG00005007820)	GP9 (ENSSHBG00005007812)	ENSSHBG00005007802	CFAP92 (ENSSHBG00005007781)	ACAD9 (ENSSHBG00005007759)	IQSEC1 (ENSSHBG00005007655) #31	NUP210 (ENSSHBG00005007487) #32	HDAC11 (ENSSHBG00005007414) #33
Golden eagle	MODERN SPECIES	12	NOL8 (ENSACCG00020010262)	ENSACCG00020010237	ENSACCG00020010223	ENSACCG00020010204	ENSACCG00020010173	IARS1 (ENSACCG00020010143)	ATP2B2 (ENSACCG00020010108)	SLC6A11 (ENSACCG00020010066)	SLC6A1 (ENSACCG00020010053)	HRH1 (ENSACCG00020010042)	ATG7 (ENSACCG00020010015)	VGLL4 (ENSACCG00020009982)	TAMM41 (ENSACCG00020009963)	TIMP4 (ENSACCG00020009945) #21	SYN2 (ENSACCG00020009920) #20	PPARG (ENSACCG00020009885) #22	TSEN2 (ENSACCG00020009874) #23	MKRN2OS (ENSACCG00020009863) #24	MKRN2 (ENSACCG00020009843) #25	RAF1 (ENSACCG00020009762) #26	ENSACCG00020009718	ISY1 (ENSACCG00020009699)	ENSACCG00020009638	RAB43 (ENSACCG00020009539)	GP9 (ENSACCG00020009526)	ENSACCG00020009517	CFAP92 (ENSACCG00020009502)	ACAD9 (ENSACCG00020009474)	IQSEC1 (ENSACCG00020009446) #31	NUP210 (ENSACCG00020009416) #32	HDAC11 (ENSACCG00020009388) #33
African ostrich	MODERN SPECIES	1066	ECM2 (ENSSCUG00000014847)	ASPN (ENSSCUG00000014857)	OMD (ENSSCUG00000014863)	OGN (ENSSCUG00000014870)	NOL8 (ENSSCUG00000014881)	IARS1 (ENSSCUG00000014894)	ATP2B2 (ENSSCUG00000014930)	SLC6A11 (ENSSCUG00000014961)	SLC6A1 (ENSSCUG00000014975)	HRH1 (ENSSCUG00000014994)	ATG7 (ENSSCUG00000015003)	VGLL4 (ENSSCUG00000015010)	TAMM41 (ENSSCUG00000015017)	TIMP4 (ENSSCUG00000015038) #21	SYN2 (ENSSCUG00000015041) #20	PPARG (ENSSCUG00000015050) #22	TSEN2 (ENSSCUG00000015062) #23	MKRN2OS (ENSSCUG00000015069) #24	MKRN2 (ENSSCUG00000015071) #25	RAF1 (ENSSCUG00000015081) #26	ENSSCUG00000015086	ISY1 (ENSSCUG00000015087)	ENSSCUG00000015094	RAB43 (ENSSCUG00000015101)	GP9 (ENSSCUG00000015105)	CFAP92 (ENSSCUG00000015116)	ACAD9 (ENSSCUG00000015133)	NUP210 (ENSSCUG00000015147) #32	HDAC11 (ENSSCUG00000015163) #33	FBLN2 (ENSSCUG00000015170) #34	WNT7A (ENSSCUG00000015175) #35
Australian saltwater crocodile	MODERN SPECIES	37	ENSCPRG00005019196	ECM2 (ENSCPRG00005019195)	ASPN (ENSCPRG00005019194)	OMD (ENSCPRG00005019193)	OGN (ENSCPRG00005019192)	IARS1 (ENSCPRG00005019188)	ENSCPRG00005019186	SLC6A11 (ENSCPRG00005019185)	SLC6A1 (ENSCPRG00005019184)	HRH1 (ENSCPRG00005019183)	ATG7 (ENSCPRG00005019181)	VGLL4 (ENSCPRG00005019180)	TAMM41 (ENSCPRG00005019178)	TIMP4 (ENSCPRG00005019177) #21	SYN2 (ENSCPRG00005019176) #20	PPARG (ENSCPRG00005019174) #22	TSEN2 (ENSCPRG00005019173) #23	MKRN2OS (ENSCPRG00005019172) #24	MKRN2 (ENSCPRG00005019171) #25	RAF1 (ENSCPRG00005019170) #26	ENSCPRG00005019169	ISY1 (ENSCPRG00005019167)	ENSCPRG00005019166	RAB43 (ENSCPRG00005019165)	ENSCPRG00005019163	GP9 (ENSCPRG00005019162)	ENSCPRG00005019161	CFAP92 (ENSCPRG00005019160)	ACAD9 (ENSCPRG00005019159)	IQSEC1 (ENSCPRG00005019158) #31	NUP210 (ENSCPRG00005019156) #32
Lepidosauria	ANCESTRAL SPECIES	14	ENSGT00940000157444	ENSGT00940000160986	ENSGT00940000157238	ENSGT00980000199506	ENSGT00390000004860	ENSGT00550000074921	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00950000183041.A	ENSGT00390000014109.d	ENSGT00940000164112.a	ENSGT00940000161980	ENSGT00530000064244.a	ENSGT00950000183014.f.b.a.b	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #31	ENSGT00390000009491.d #32	ENSGT00940000156047 #34
Episquamata	ANCESTRAL SPECIES	4	ENSGT00940000157444	ENSGT00940000160986	ENSGT00940000157238	ENSGT00980000199506	ENSGT00390000004860	ENSGT00550000074921	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00950000183041.A	ENSGT00390000014109.d	ENSGT00940000164112.a	ENSGT00940000161980	ENSGT00530000064244.a	ENSGT00950000183014.f.b.a.b	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #31	ENSGT00390000009491.d #32	ENSGT00940000156047 #34
Toxicofera	ANCESTRAL SPECIES	3	ENSGT00940000157444	ENSGT00940000160986	ENSGT00940000157238	ENSGT00980000199506	ENSGT00390000004860	ENSGT00550000074921	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00950000183041.A	ENSGT00390000014109.d	ENSGT00940000164112.a	ENSGT00940000161980	ENSGT00530000064244.a	ENSGT00950000183014.f.b.a.b	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #31	ENSGT00390000009491.d #32	ENSGT00940000156047 #34
Elapidae	ANCESTRAL SPECIES	2	ENSGT00940000159941	ENSGT00940000157444	ENSGT00940000160986	ENSGT00940000157238	ENSGT00390000004860	ENSGT00550000074921	ENSGT00940000161461	ENSGT00940000157569.d	ENSGT00940000156027	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062.k #20	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00950000183041.A	ENSGT00390000014109.d	ENSGT00940000164112.a	ENSGT00940000161980	ENSGT00530000064244.a	ENSGT00950000183014.f.b.a.b	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #31	ENSGT00390000009491.d #32	ENSGT00940000156047 #34
Elapidae_a	ANCESTRAL SPECIES	8	ENSGT00940000159941	ENSGT00940000157444	ENSGT00940000160986	ENSGT00940000157238	ENSGT00390000004860	ENSGT00550000074921	ENSGT00940000161461	ENSGT00940000157569.d	ENSGT00940000156027	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062.k #20	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00950000183041.A	ENSGT00390000014109.d	ENSGT00940000164112.a	ENSGT00940000161980	ENSGT00530000064244.a	ENSGT00950000183014.f.b.a.b	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #31	ENSGT00390000009491.d #32	ENSGT00940000156047 #34
Acanthophiinae	ANCESTRAL SPECIES	10	ENSGT00940000159941	ENSGT00940000157444	ENSGT00940000160986	ENSGT00940000157238	ENSGT00390000004860	ENSGT00550000074921	ENSGT00940000161461	ENSGT00940000157569.d	ENSGT00940000156027	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062.k #20	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00950000183041.A	ENSGT00390000014109.d	ENSGT00940000164112.a	ENSGT00940000161980	ENSGT00530000064244.a	ENSGT00950000183014.f.b.a.b	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #31	ENSGT00390000009491.d #32	ENSGT00940000156047 #34
Mainland tiger snake	MODERN SPECIES	2															ENSNSUG00000020113 #20	PPARG (ENSNSUG00000020114) #22	TSEN2 (ENSNSUG00000020115) #23	ENSNSUG00000020116	MKRN2 (ENSNSUG00000020117) #25	RAF1 (ENSNSUG00000020119) #26	ENSNSUG00000020120	ISY1 (ENSNSUG00000020121)	ENSNSUG00000020122	RAB43 (ENSNSUG00000020123)	ENSNSUG00000020124	GP9 (ENSNSUG00000020125)	ENSNSUG00000020128	ACAD9 (ENSNSUG00000020129)	IQSEC1 (ENSNSUG00000020130) #31	ENSNSUG00000020131	NUP210 (ENSNSUG00000020136) #32
Eastern brown snake	MODERN SPECIES	3	ECM2 (ENSPTXG00000009504)	ASPN (ENSPTXG00000009503)	OMD (ENSPTXG00000009502)	OGN (ENSPTXG00000009501)	NOL8 (ENSPTXG00000009500)	IARS1 (ENSPTXG00000009498)	ATP2B2 (ENSPTXG00000007129)	SLC6A11 (ENSPTXG00000007128)	SLC6A1 (ENSPTXG00000007090)	HRH1 (ENSPTXG00000007087)	ATG7 (ENSPTXG00000007086)	VGLL4 (ENSPTXG00000007085)	TAMM41 (ENSPTXG00000007075)	ENSPTXG00000007073 #21	SYN2 (ENSPTXG00000007068) #20	PPARG (ENSPTXG00000007067) #22	TSEN2 (ENSPTXG00000007066) #23	MKRN2OS (ENSPTXG00000007065) #24	MKRN2 (ENSPTXG00000007064) #25	RAF1 (ENSPTXG00000007063) #26	ENSPTXG00000007062	ISY1 (ENSPTXG00000007061)	ENSPTXG00000007055	RAB43 (ENSPTXG00000007054)	ENSPTXG00000007053	GP9 (ENSPTXG00000007052)	EFCC1 (ENSPTXG00000007051)	CFAP92 (ENSPTXG00000007050)	ACAD9 (ENSPTXG00000007049)	IQSEC1 (ENSPTXG00000006860) #31	NUP210 (ENSPTXG00000006850) #32
Blue-lipped sea krait	MODERN SPECIES	5541																PPARG (ENSLLTG00000006352) #22
Indian cobra	MODERN SPECIES	1	ASPN (ENSNNAG00000000503)	OMD (ENSNNAG00000000472)	OGN (ENSNNAG00000000453)	ENSNNAG00000000435	IARS1 (ENSNNAG00000018371)	ENSNNAG00000018337	ATP2B2 (ENSNNAG00000018213)	SLC6A11 (ENSNNAG00000018147)	SLC6A1 (ENSNNAG00000018109)	HRH1 (ENSNNAG00000018100)	ATG7 (ENSNNAG00000018034)	VGLL4 (ENSNNAG00000018012)	TAMM41 (ENSNNAG00000018006)	ENSNNAG00000018001 #21	SYN2 (ENSNNAG00000017991) #20	PPARG (ENSNNAG00000017984) #22	TSEN2 (ENSNNAG00000017971) #23	MKRN2OS (ENSNNAG00000017966) #24	MKRN2 (ENSNNAG00000017961) #25	RAF1 (ENSNNAG00000017955) #26	ENSNNAG00000017950	ENSNNAG00000017946	ISY1 (ENSNNAG00000017943)	ENSNNAG00000017924	RAB43 (ENSNNAG00000017921)	ENSNNAG00000017919	ENSNNAG00000017916	EFCC1 (ENSNNAG00000017915)	CFAP92 (ENSNNAG00000017912)	ACAD9 (ENSNNAG00000017867)	IQSEC1 (ENSNNAG00000017851) #31
Lizard	MODERN SPECIES	1	ENSACAG00000036368	ENSACAG00000038899	SLC6A11 (ENSACAG00000009875)	ENSACAG00000041468	SLC6A1 (ENSACAG00000010020)	ENSACAG00000035306	ENSACAG00000036621	ENSACAG00000043799	HRH1 (ENSACAG00000010219)	ATG7 (ENSACAG00000010224)	VGLL4 (ENSACAG00000010299)	TAMM41 (ENSACAG00000010318)	SYN2 (ENSACAG00000013404) #20	ENSACAG00000028862	TIMP4 (ENSACAG00000013457) #21	PPARG (ENSACAG00000013360) #22	TSEN2 (ENSACAG00000013345) #23	MKRN2OS (ENSACAG00000029532) #24	RAF1 (ENSACAG00000013194) #26	MKRN2 (ENSACAG00000013310) #25	ENSACAG00000038503	ISY1 (ENSACAG00000013166)	ENSACAG00000013142	ENSACAG00000013126	ENSACAG00000013124	GP9 (ENSACAG00000022777)	ENSACAG00000013121	ENSACAG00000013119	ACAD9 (ENSACAG00000012998)	ENSACAG00000012926 #31	ENSACAG00000045372
Laterata	ANCESTRAL SPECIES	1	ENSGT00940000157444	ENSGT00940000160986	ENSGT00940000157238	ENSGT00390000004860.gb	ENSGT00390000004860.fb	ENSGT00550000074921	ENSGT00940000161461	ENSGT00940000157569	ENSGT00940000156027	ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266 #23	ENSGT00390000003839 #24	ENSGT00950000183077.a.b #25	ENSGT00940000156084 #26	ENSGT00950000183041.A	ENSGT00390000014109.d	ENSGT00940000164112.a	ENSGT00940000161980	ENSGT00530000064244.a	ENSGT00940000163561	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #31	ENSGT00390000009491.d #32	ENSGT00940000156047 #34
Common wall lizard	MODERN SPECIES	10	IARS1 (ENSPMRG00000012391)	ENSPMRG00000012464	ENSPMRG00000012467	ENSPMRG00000012475	ATP2B2 (ENSPMRG00000012496)	SLC6A11 (ENSPMRG00000012549)	SLC6A1 (ENSPMRG00000012556)	ENSPMRG00000012565	HRH1 (ENSPMRG00000012568)	ATG7 (ENSPMRG00000012572)	VGLL4 (ENSPMRG00000012585)	TAMM41 (ENSPMRG00000012590)	SYN2 (ENSPMRG00000012608) #20	TIMP4 (ENSPMRG00000012664) #21	ENSPMRG00000012669	PPARG (ENSPMRG00000012674) #22	TSEN2 (ENSPMRG00000012682) #23	MKRN2OS (ENSPMRG00000012689) #24	MKRN2 (ENSPMRG00000012692) #25	RAF1 (ENSPMRG00000012698) #26	ENSPMRG00000012709	ISY1 (ENSPMRG00000012711)	ENSPMRG00000012718	RAB43 (ENSPMRG00000012725)	ENSPMRG00000012727	GP9 (ENSPMRG00000012730)	ENSPMRG00000012736	ENSPMRG00000012740	EFCC1 (ENSPMRG00000012744)	CFAP92 (ENSPMRG00000012752)	ACAD9 (ENSPMRG00000012761)
Argentine black and white tegu	MODERN SPECIES	8	ASPN (ENSSMRG00000014848)	OMD (ENSSMRG00000014849)	OGN (ENSSMRG00000014850)	ENSSMRG00000014853	RPL29 (ENSSMRG00000014854)	IARS1 (ENSSMRG00000014856)	ENSSMRG00000014887	SLC6A11 (ENSSMRG00000019567)	SLC6A1 (ENSSMRG00000019568)	HRH1 (ENSSMRG00000019569)	ATG7 (ENSSMRG00000019571)	VGLL4 (ENSSMRG00000019572)	TAMM41 (ENSSMRG00000019573)	SYN2 (ENSSMRG00000019575) #20	TIMP4 (ENSSMRG00000019576) #21	PPARG (ENSSMRG00000019578) #22	TSEN2 (ENSSMRG00000019579) #23	MKRN2OS (ENSSMRG00000019580) #24	MKRN2 (ENSSMRG00000019581) #25	RAF1 (ENSSMRG00000019582) #26	ENSSMRG00000019583	ISY1 (ENSSMRG00000019584)	ENSSMRG00000019585	RAB43 (ENSSMRG00000019586)	ENSSMRG00000019587	GP9 (ENSSMRG00000019588)	ENSSMRG00000019589	ENSSMRG00000019590	ACAD9 (ENSSMRG00000019591)	IQSEC1 (ENSSMRG00000019592) #31	NUP210 (ENSSMRG00000019594) #32
tuatara	MODERN SPECIES	1318													TAMM41 (ENSSPUG00000018148)	TIMP4 (ENSSPUG00000018140) #21	SYN2 (ENSSPUG00000018134) #20	PPARG (ENSSPUG00000018117) #22	TSEN2 (ENSSPUG00000018099) #23	MKRN2OS (ENSSPUG00000018090) #24	MKRN2 (ENSSPUG00000018086) #25	RAF1 (ENSSPUG00000018074) #26	ENSSPUG00000018059	ISY1 (ENSSPUG00000018050)	ENSSPUG00000017987	RAB43 (ENSSPUG00000017960)	PREX1 (ENSSPUG00000017929)
Anura	ANCESTRAL SPECIES	319										ENSGT00940000160690	ENSGT00390000017509	ENSGT00390000003282.B	ENSGT00390000000616	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22
Leishan spiny toad	MODERN SPECIES	11	PBRM1 (ENSLLEG00000029303)	ENSLLEG00000029797	GNL3 (ENSLLEG00000029804)	GLT8D1 (ENSLLEG00000029833)	SPCS1 (ENSLLEG00000029853)	ENSLLEG00000029862	NEK4 (ENSLLEG00000029878)	ENSLLEG00000029907	HRH1 (ENSLLEG00000029914)	ATG7 (ENSLLEG00000029952)	ENSLLEG00000030142	VGLL4 (ENSLLEG00000030150)	TAMM41 (ENSLLEG00000030170)	SYN2 (ENSLLEG00000030180) #20	TIMP4 (ENSLLEG00000030192) #21	PPARG (ENSLLEG00000030215) #22	ENSLLEG00000030256	ENSLLEG00000030286	PLXNB1 (ENSLLEG00000030332)	ENSLLEG00000030364	ENSLLEG00000030374	ENSLLEG00000030388	SETD5 (ENSLLEG00000030406)	ENSLLEG00000030451	LHFPL4 (ENSLLEG00000030459)	ENSLLEG00000030476	MTMR14 (ENSLLEG00000019654)	ENSLLEG00000020489	CPNE9 (ENSLLEG00000020517)	ENSLLEG00000020689	BRPF1 (ENSLLEG00000020739)
Frog	MODERN SPECIES	4	ptpdc1 (ENSXETG00000038413)	ENSXETG00000042603	wnt7a (ENSXETG00000042176) #35	ENSXETG00000024197	ENSXETG00000041612	XB5944457 [provisional] (ENSXETG00000012105)	ENSXETG00000049123	ENSXETG00000045682	ENSXETG00000045653	uqcrc1 (ENSXETG00000021470)	nisch (ENSXETG00000021467)	ENSXETG00000045029	ENSXETG00000043200	ENSXETG00000042389	ENSXETG00000038805	pparg (ENSXETG00000017422) #22	raf1 (ENSXETG00000020163) #26	mkrn2 (ENSXETG00000043301) #25	mkrn2os (ENSXETG00000041950) #24	ENSXETG00000042890	itih3 (ENSXETG00000006887)	ENSXETG00000046560	nek4 (ENSXETG00000006888)	gnl3 (ENSXETG00000013669)	spcs1 (ENSXETG00000013668)	glt8d1 (ENSXETG00000042897)	ENSXETG00000049370	ENSXETG00000043218	pbrm1 (ENSXETG00000013671)	NT5DC2 (ENSXETG00000047019)	STAB1 (ENSXETG00000044486)