Gnathostomata	ANCESTRAL SPECIES	33											ENSGT00940000156027 #12	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00950000183041.A	ENSGT00390000014109	ENSGT00940000164112	ENSGT00940000161980	ENSGT00530000064244.a	ENSGT00950000183014.f.b.a.b	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #32	ENSGT00390000009491.d #33	ENSGT00940000156308 #34
Euteleostomi	ANCESTRAL SPECIES	9	ENSGT00940000160986	ENSGT00940000157238	ENSGT00390000011897	ENSGT00390000004860	ENSGT00620000089227	ENSGT00550000074921	ENSGT00940000154527.b	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT01030000235208	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00950000183041.A	ENSGT00390000014109	ENSGT00940000164112.a	ENSGT00940000161980	ENSGT00530000064244.a	ENSGT00940000163561	ENSGT00950000183014.f.b.a.b	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #32
Sarcopterygii	ANCESTRAL SPECIES	6	ENSGT00940000160986	ENSGT00940000157238	ENSGT00390000011897	ENSGT00390000004860	ENSGT00620000089227	ENSGT00550000074921	ENSGT00940000154527.b	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT01030000235208	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00950000183041.A	ENSGT00390000014109	ENSGT00940000164112.a	ENSGT00940000161980	ENSGT00530000064244.a	ENSGT00950000183014.f.b.a.b	ENSGT00940000163561	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #32
Tetrapoda	ANCESTRAL SPECIES	14	ENSGT00940000157444	ENSGT00940000160986	ENSGT00940000157238	ENSGT00390000011897	ENSGT00390000004860	ENSGT00620000089227	ENSGT00550000074921	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT01030000235208	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00950000183041.A	ENSGT00390000014109	ENSGT00940000164112.a	ENSGT00940000161980	ENSGT00530000064244.a	ENSGT00950000183014.f.b.a.b	ENSGT00940000163561	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #32
Amniota	ANCESTRAL SPECIES	22	ENSGT00940000160986	ENSGT00940000157238	ENSGT00390000011897	ENSGT00390000004860	ENSGT00620000089227	ENSGT00550000074921	ENSGT00940000161461 #10	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT01030000235208	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00950000183041.A	ENSGT00390000014109	ENSGT00940000164112.a	ENSGT00940000161980	ENSGT00530000064244.a	ENSGT00940000163561	ENSGT00950000183014.f.b.a.b	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #32
Mammalia	ANCESTRAL SPECIES	18	ENSGT00940000157444	ENSGT00940000160986	ENSGT00940000157238	ENSGT00390000011897	ENSGT00390000004860	ENSGT00550000074921	ENSGT00940000161461 #10	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT01030000235208	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00950000183041.A.f	ENSGT00950000183041.A.e	ENSGT00390000014109	ENSGT00940000161980	ENSGT00530000064244.a	ENSGT00940000163561	ENSGT00950000183014.f.b.a.b	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #32
Theria	ANCESTRAL SPECIES	28	ENSGT00390000011082	ENSGT00390000014353	ENSGT00940000159835	ENSGT00940000155616	ENSGT00390000004064 #8	ENSGT00940000153393.B #9	ENSGT00940000161461 #10	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT01030000235208	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00390000017530 #29	ENSGT00390000017740.a.b #30	ENSGT00940000153973	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189
Eutheria	ANCESTRAL SPECIES	14	ENSGT00390000011082	ENSGT00390000014353	ENSGT00940000159835	ENSGT00940000155616	ENSGT00390000004064 #8	ENSGT00940000153393.B #9	ENSGT00940000161461 #10	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT01030000235208	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00390000017530 #29	ENSGT00390000017740.a.b #30	ENSGT00940000153973.c.a.a	ENSGT00940000153973.c.a.b.b	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a
Boreoeutheria	ANCESTRAL SPECIES	2	ENSGT00390000014353	ENSGT00940000159835	ENSGT00940000155616.c.a	ENSGT00390000004064 #8	ENSGT00940000153393.B #9	ENSGT00910000147252	ENSGT00940000161461 #10	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT01030000235208	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00390000017530 #29	ENSGT00390000017740.a.b #30	ENSGT00940000153973.c.a.a	ENSGT00940000153973.c.a.b.b	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000175447	ENSGT00930000152979
Euarchontoglires	ANCESTRAL SPECIES	2	ENSGT00940000159835	ENSGT01090000263461	ENSGT00940000155616.c.a	ENSGT00390000004064 #8	ENSGT00940000153393.B #9	ENSGT00910000147252	ENSGT00940000161461 #10	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00390000017530 #29	ENSGT00390000017740.a.b #30	ENSGT00940000153973.c.a.a	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT00930000152979	ENSGT00940000175447	ENSGT01020000230394.e.b.a
Primates	ANCESTRAL SPECIES	1	ENSGT00940000159835	ENSGT01090000263461	ENSGT00940000155616.c.a	ENSGT00390000004064 #8	ENSGT00940000153393.B #9	ENSGT00910000147252	ENSGT00940000161461 #10	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00390000017530 #29	ENSGT00390000017740.a.b #30	ENSGT00940000153973.c.a.a	ENSGT00940000153973.c.a.b.b	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000175447	ENSGT00930000152979	ENSGT00940000160900
Haplorrhini	ANCESTRAL SPECIES	5	ENSGT00940000159835	ENSGT01090000263461	ENSGT00940000155616.c.a	ENSGT00390000004064 #8	ENSGT00940000153393.B #9	ENSGT00910000147252	ENSGT00940000161461 #10	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00390000017530 #29	ENSGT00390000017740.a.b #30	ENSGT00940000153973.c.a.a
Simiiformes	ANCESTRAL SPECIES	1	ENSGT00940000159835	ENSGT01090000263461	ENSGT00940000155616.c.a	ENSGT00390000004064 #8	ENSGT00940000153393.B.v #9	ENSGT00910000147252	ENSGT00940000161461 #10	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00390000017530 #29	ENSGT00390000017740.a.b #30	ENSGT00940000153973.c.a.a	ENSGT00940000153973.c.a.b.b	ENSGT00940000156915 #32	ENSGT00390000009491.d #33	ENSGT00940000156308 #34	ENSGT00940000156047 #35	ENSGT00940000158523 #36	ENSGT00390000013132	ENSGT00390000009671 #37
Platyrrhini	ANCESTRAL SPECIES	18	ENSGT00940000159835	ENSGT00940000155616.c.a	ENSGT00390000004064 #8	ENSGT00940000153393.B.u.a ##9	ENSGT00910000147252	ENSGT00940000153393.B.v #9	ENSGT00940000161461 #10	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00390000017509.e #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00390000017530 #29	ENSGT00390000017740.a.b #30	ENSGT00940000158890.q #31	ENSGT00940000153973.c.a.b.a.b	ENSGT00940000156915 #32	ENSGT00390000009491.d #33	ENSGT00940000156308 #34	ENSGT00940000156047 #35	ENSGT00940000158523 #36	ENSGT00390000013132.p	ENSGT00390000009671 #37
Cebidae	ANCESTRAL SPECIES	14	ENSGT00940000159835	ENSGT00940000155616.c.a	ENSGT00390000004064 #8	ENSGT00940000153393.B.u.a ##9	ENSGT00910000147252	ENSGT00940000153393.B.v #9	ENSGT00940000161461 #10	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00390000017509.e #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00390000017530 #29	ENSGT00390000017740.a.b #30	ENSGT00940000158890.q #31	ENSGT00940000153973.c.a.b.b	ENSGT00940000156915 #32	ENSGT00390000009491.d #33	ENSGT00940000156308 #34	ENSGT00940000156047 #35	ENSGT00940000158523 #36	ENSGT00390000013132.p	ENSGT00390000009671 #37
Marmoset	MODERN SPECIES	6	ENSCJAG00000056863 #7	GHRL (ENSCJAG00000016424) #8	SEC13 (ENSCJAG00000016439) #9	ATP2B2 (ENSCJAG00000016455) #10	SLC6A11 (ENSCJAG00000016541) #11	SLC6A1 (ENSCJAG00000016551) #12	ENSCJAG00000072589 #13	ENSCJAG00000070697 #14	ENSCJAG00000084863 #15	HRH1 (ENSCJAG00000043961) #16	ATG7 (ENSCJAG00000016583) #17	ENSCJAG00000058577 #18	VGLL4 (ENSCJAG00000016643) #19	SYN2 (ENSCJAG00000016647) #20	TIMP4 (ENSCJAG00000038791) #21	PPARG (ENSCJAG00000016687) #22	ENSCJAG00000086839 #23	ENSCJAG00000075859 #24	TSEN2 (ENSCJAG00000080511) #25	MKRN2OS (ENSCJAG00000040602) #26	ENSCJAG00000016733 #27	RAF1 (ENSCJAG00000016737) #28	TMEM40 (ENSCJAG00000016751) #29	CAND2 (ENSCJAG00000016770) #30	ENSCJAG00000061647 #31	IQSEC1 (ENSCJAG00000016781) #32	NUP210 (ENSCJAG00000016795) #33	HDAC11 (ENSCJAG00000016844) #34	FBLN2 (ENSCJAG00000016873) #35	WNT7A (ENSCJAG00000040771) #36	TMEM43 (ENSCJAG00000016924) #37
Cebidae_a	ANCESTRAL SPECIES	47	ENSGT00940000159835	ENSGT00940000155616.c.a	ENSGT00390000004064 #8	ENSGT00940000153393.B.u.a ##9	ENSGT00910000147252	ENSGT00940000153393.B.v #9	ENSGT00940000161461 #10	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00390000017509.e #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00390000017530 #29	ENSGT00390000017740.a.b #30	ENSGT00940000153973.c.a.b.b	ENSGT00940000156915 #32	ENSGT00390000009491.d #33	ENSGT00940000156308 #34	ENSGT00940000156047 #35	ENSGT00940000158523 #36	ENSGT00390000013132.p	ENSGT00390000009671 #37	ENSGT00390000005194
Bolivian squirrel monkey	MODERN SPECIES	62	VHL (ENSSBOG00000027433)	IRAK2 (ENSSBOG00000023357)	ENSSBOG00000025922	GHRL (ENSSBOG00000005768) #8	ENSSBOG00000023709 ##9	ENSSBOG00000020409	ATP2B2 (ENSSBOG00000020057) #10	SLC6A11 (ENSSBOG00000029132) #11	SLC6A1 (ENSSBOG00000022090) #12	HRH1 (ENSSBOG00000015886) #16	ATG7 (ENSSBOG00000024304) #17	VGLL4 (ENSSBOG00000026167) #19	TAMM41 (ENSSBOG00000034374)	TIMP4 (ENSSBOG00000032293) #21	ENSSBOG00000030292 #20	PPARG (ENSSBOG00000005712) #22	TSEN2 (ENSSBOG00000035499) #25	MKRN2OS (ENSSBOG00000033896) #26	MKRN2 (ENSSBOG00000034434) #27	RAF1 (ENSSBOG00000015492) #28	ACAP2 (ENSSBOG00000029437)	XXYLT1 (ENSSBOG00000034641)	FAM43A (ENSSBOG00000018424)	LSG1 (ENSSBOG00000034938)	TMEM44 (ENSSBOG00000020794)	ATP13A3 (ENSSBOG00000005544)	LRRC15 (ENSSBOG00000031469)	CPN2 (ENSSBOG00000014283)	ENSSBOG00000033814	HES1 (ENSSBOG00000028215)	OPA1 (ENSSBOG00000021973)
Capuchin	MODERN SPECIES	281	FANCD2OS (ENSCCAG00000014976)	BRK1 (ENSCCAG00000022111)	VHL (ENSCCAG00000031654)	IRAK2 (ENSCCAG00000025730)	TATDN2 (ENSCCAG00000024974)	GHRL (ENSCCAG00000022227) #8	SEC13 (ENSCCAG00000026715) #9	ATP2B2 (ENSCCAG00000032907) #10	SLC6A11 (ENSCCAG00000030058) #11	SLC6A1 (ENSCCAG00000026677) #12	ATG7 (ENSCCAG00000035255) #17	VGLL4 (ENSCCAG00000032615) #19	TAMM41 (ENSCCAG00000025773)	TIMP4 (ENSCCAG00000035892) #21	SYN2 (ENSCCAG00000034848) #20	PPARG (ENSCCAG00000027364) #22	TSEN2 (ENSCCAG00000037851) #25	MKRN2OS (ENSCCAG00000031553) #26	ENSCCAG00000022711	MKRN2 (ENSCCAG00000019802) #27	RAF1 (ENSCCAG00000023070) #28	TMEM40 (ENSCCAG00000020743) #29	CAND2 (ENSCCAG00000032849) #30	RPL32 (ENSCCAG00000025373)	IQSEC1 (ENSCCAG00000024388) #32
Mas night monkey	MODERN SPECIES	321	FANCD2 (ENSANAG00000037438)	EMC3 (ENSANAG00000029316)	PRRT3 (ENSANAG00000028211)	CRELD1 (ENSANAG00000026557)	ENSANAG00000021183	IL17RE (ENSANAG00000022892)	CIDEC (ENSANAG00000024285)	ENSANAG00000019292	HRH1 (ENSANAG00000031051) #16	ENSANAG00000032758 #17	ENSANAG00000012369	VGLL4 (ENSANAG00000038129) #19	TAMM41 (ENSANAG00000037740)	SYN2 (ENSANAG00000021892) #20	TIMP4 (ENSANAG00000032042) #21	PPARG (ENSANAG00000020115) #22	TSEN2 (ENSANAG00000026891) #25	MKRN2OS (ENSANAG00000026143) #26	MKRN2 (ENSANAG00000022646) #27	RAF1 (ENSANAG00000031934) #28	TMEM40 (ENSANAG00000036821) #29	CAND2 (ENSANAG00000020366) #30	ENSANAG00000020589	IQSEC1 (ENSANAG00000028368) #32	NUP210 (ENSANAG00000036448) #33	HDAC11 (ENSANAG00000035737) #34	FBLN2 (ENSANAG00000027135) #35	WNT7A (ENSANAG00000033071) #36	CHCHD4 (ENSANAG00000034814)	TMEM43 (ENSANAG00000036418) #37	XPC (ENSANAG00000021069)
Catarrhini	ANCESTRAL SPECIES	2	ENSGT00940000155616.c.a	ENSGT00910000147532	ENSGT00390000004064 #8	ENSGT00940000153393.B.v #9	ENSGT00910000147252	ENSGT00940000161461 #10	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00390000016970.h	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00390000017530 #29	ENSGT00390000017740.a.b #30	ENSGT00940000153973.c.a.a	ENSGT00940000153973.c.a.b.b	ENSGT00940000156915 #32	ENSGT00390000009491.d #33	ENSGT00940000156308 #34	ENSGT00940000156047 #35	ENSGT00910000147988	ENSGT00940000158523 #36	ENSGT00390000013132.q.a
Hominoidea	ANCESTRAL SPECIES	2	ENSGT00910000147532	ENSGT00390000004064 #8	ENSGT00940000153393.B.v #9	ENSGT00910000147252	ENSGT00940000161461 #10	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00390000013132.q.a.c	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00390000016970.h	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266.a #25	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00390000017530 #29	ENSGT00390000017740.a.b #30	ENSGT00940000153973.c.a.a	ENSGT00940000156915 #32	ENSGT00390000009491.d #33	ENSGT00940000156308 #34	ENSGT00940000156047 #35	ENSGT00910000147988	ENSGT00940000158523 #36	ENSGT00390000013132.q.a.d	ENSGT00390000009671 #37
Hominidae	ANCESTRAL SPECIES	2	ENSGT00910000147532	ENSGT00390000004064 #8	ENSGT00940000153393.B.v #9	ENSGT00910000147252	ENSGT00940000161461 #10	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00390000013132.q.a.c	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00390000016970.h	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266.a #25	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00390000017530 #29	ENSGT00390000017740.a.b #30	ENSGT00940000153973.c.a.a	ENSGT00940000156915 #32	ENSGT00390000009491.d #33	ENSGT00940000156308 #34	ENSGT00940000156047 #35	ENSGT00910000147988	ENSGT00940000158523 #36	ENSGT00390000013132.q.a.d	ENSGT00390000009671 #37
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	2	ENSGT00910000147532	ENSGT00390000004064 #8	ENSGT00940000153393.B.v #9	ENSGT00910000147252	ENSGT00940000161461 #10	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00390000013132.q.a.c	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00390000016970.h	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266.a #25	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00390000017530 #29	ENSGT00940000153309.c.a.e.b	ENSGT00390000017740.a.b #30	ENSGT00940000153973.c.a.b.b	ENSGT00940000156915 #32	ENSGT00390000009491.d #33	ENSGT00940000156308 #34	ENSGT00940000156047 #35	ENSGT00910000147988	ENSGT00940000158523 #36	ENSGT00390000013132.q.a.d
Homo/Pan group	ANCESTRAL SPECIES	3	ENSGT00910000147532	ENSGT00390000004064 #8	ENSGT00940000153393.B.v #9	ENSGT00910000147252	ENSGT00940000161461 #10	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00390000013132.q.a.c	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00390000016970.h	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266.a #25	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00390000017530 #29	ENSGT00940000153309.c.a.e.b	ENSGT00390000017740.a.b #30	ENSGT00940000153973.c.a.b.b	ENSGT00940000156915 #32	ENSGT00390000009491.d #33	ENSGT00940000156308 #34	ENSGT00940000156047 #35	ENSGT00940000158523 #36	ENSGT00390000013132.q.a.d	ENSGT00390000009671 #37
Pan	ANCESTRAL SPECIES	2	ENSGT00390000004064 #8	ENSGT00940000153393.B.v #9	ENSGT00910000147252	ENSGT00940000161461 #10	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00390000013132.q.a.c	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00390000016970.h	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00910000148097	ENSGT00940000158273 #22	ENSGT00390000013266.a #25	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00390000017530 #29	ENSGT00940000153309.c.a.e.b	ENSGT00390000017740.a.b #30	ENSGT00940000153973.c.a.a	ENSGT00940000153973.c.a.b.b	ENSGT00940000156915 #32	ENSGT00390000009491.d #33	ENSGT00940000156308 #34	ENSGT00940000156047 #35	ENSGT00940000158523 #36	ENSGT00390000013132.q.a.d
Chimpanzee	MODERN SPECIES	16	SEC13 (ENSPTRG00000014619) #9	ATP2B2 (ENSPTRG00000014620) #10	ENSPTRG00000042808	SLC6A11 (ENSPTRG00000014621) #11	SLC6A1 (ENSPTRG00000014622) #12	ENSPTRG00000050374	HRH1 (ENSPTRG00000030304) #16	ATG7 (ENSPTRG00000014625) #17	VGLL4 (ENSPTRG00000014626) #19	TAMM41 (ENSPTRG00000014628)	ENSPTRG00000049448	SYN2 (ENSPTRG00000052430) #20	TIMP4 (ENSPTRG00000014630) #21	ENSPTRG00000043822	ENSPTRG00000045342	PPARG (ENSPTRG00000014632) #22	TSEN2 (ENSPTRG00000014633) #25	MKRN2OS (ENSPTRG00000046408) #26	MKRN2 (ENSPTRG00000014634) #27	RAF1 (ENSPTRG00000014635) #28	TMEM40 (ENSPTRG00000014636) #29	ENSPTRG00000051489	CAND2 (ENSPTRG00000014637) #30	ENSPTRG00000050657	IQSEC1 (ENSPTRG00000014639) #32	ENSPTRG00000046540	NUP210 (ENSPTRG00000014640) #33	HDAC11 (ENSPTRG00000014641) #34	FBLN2 (ENSPTRG00000014642) #35	WNT7A (ENSPTRG00000046824) #36	CHCHD4 (ENSPTRG00000014647)
Bonobo	MODERN SPECIES	16	GHRL (ENSPPAG00000026950) #8	SEC13 (ENSPPAG00000042985) #9	ATP2B2 (ENSPPAG00000043225) #10	ENSPPAG00000029625	SLC6A11 (ENSPPAG00000039217) #11	SLC6A1 (ENSPPAG00000042842) #12	HRH1 (ENSPPAG00000023416) #16	ATG7 (ENSPPAG00000040386) #17	VGLL4 (ENSPPAG00000035709) #19	TAMM41 (ENSPPAG00000037692)	ENSPPAG00000040309	SYN2 (ENSPPAG00000038622) #20	TIMP4 (ENSPPAG00000036078) #21	ENSPPAG00000030837	ENSPPAG00000028973	PPARG (ENSPPAG00000029006) #22	TSEN2 (ENSPPAG00000035317) #25	MKRN2OS (ENSPPAG00000032216) #26	MKRN2 (ENSPPAG00000036523) #27	RAF1 (ENSPPAG00000035239) #28	ENSPPAG00000024005	TMEM40 (ENSPPAG00000019163) #29	ENSPPAG00000036413	CAND2 (ENSPPAG00000004317) #30	RPL32 (ENSPPAG00000008188)	IQSEC1 (ENSPPAG00000036448) #32	ENSPPAG00000028546	NUP210 (ENSPPAG00000037715) #33	HDAC11 (ENSPPAG00000037567) #34	FBLN2 (ENSPPAG00000015671) #35	WNT7A (ENSPPAG00000030187) #36
Human	MODERN SPECIES	15	VHL (ENSG00000134086)	IRAK2 (ENSG00000134070)	TATDN2 (ENSG00000157014)	ENSG00000289763	GHRL (ENSG00000157017) #8	SEC13 (ENSG00000157020) #9	ATP2B2 (ENSG00000157087) #10	SLC6A11 (ENSG00000132164) #11	SLC6A1 (ENSG00000157103) #12	HRH1 (ENSG00000196639) #16	ATG7 (ENSG00000197548) #17	VGLL4 (ENSG00000144560) #19	TAMM41 (ENSG00000144559)	SYN2 (ENSG00000157152) #20	TIMP4 (ENSG00000157150) #21	PPARG (ENSG00000132170) #22	TSEN2 (ENSG00000154743) #25	MKRN2OS (ENSG00000225526) #26	MKRN2 (ENSG00000075975) #27	RAF1 (ENSG00000132155) #28	TMEM40 (ENSG00000088726) #29	CAND2 (ENSG00000144712) #30	ENSG00000289809	RPL32 (ENSG00000144713)	IQSEC1 (ENSG00000144711) #32	NUP210 (ENSG00000132182) #33	HDAC11 (ENSG00000163517) #34	FBLN2 (ENSG00000163520) #35	WNT7A (ENSG00000154764) #36	CHCHD4 (ENSG00000163528)	TMEM43 (ENSG00000170876) #37
Gorilla	MODERN SPECIES	16	GHRL (ENSGGOG00000010154) #8	SEC13 (ENSGGOG00000010158) #9	ATP2B2 (ENSGGOG00000010167) #10	SLC6A11 (ENSGGOG00000000379) #11	SLC6A1 (ENSGGOG00000000382) #12	ENSGGOG00000016573	HRH1 (ENSGGOG00000038168) #16	ATG7 (ENSGGOG00000003493) #17	VGLL4 (ENSGGOG00000003500) #19	ENSGGOG00000039682	SYN2 (ENSGGOG00000009751) #20	TIMP4 (ENSGGOG00000009761) #21	ENSGGOG00000038254	ENSGGOG00000038928	ENSGGOG00000043543	PPARG (ENSGGOG00000013117) #22	TSEN2 (ENSGGOG00000012488) #25	ENSGGOG00000041526 #26	MKRN2 (ENSGGOG00000000429) #27	RAF1 (ENSGGOG00000023025) #28	TMEM40 (ENSGGOG00000028438) #29	ENSGGOG00000021954	CAND2 (ENSGGOG00000001004) #30	RPL32 (ENSGGOG00000043568)	IQSEC1 (ENSGGOG00000001008) #32	NUP210 (ENSGGOG00000015096) #33	HDAC11 (ENSGGOG00000007735) #34	FBLN2 (ENSGGOG00000011561) #35	ENSGGOG00000042871	WNT7A (ENSGGOG00000012654) #36	CHCHD4 (ENSGGOG00000024077)
Orangutan	MODERN SPECIES	16	BRK1 (ENSPPYG00000030112)	VHL (ENSPPYG00000034342)	IRAK2 (ENSPPYG00000013662)	TATDN2 (ENSPPYG00000013661)	GHRL (ENSPPYG00000013659) #8	SEC13 (ENSPPYG00000013658) #9	ATP2B2 (ENSPPYG00000013657) #10	SLC6A11 (ENSPPYG00000013656) #11	SLC6A1 (ENSPPYG00000013655) #12	HRH1 (ENSPPYG00000013653) #16	ATG7 (ENSPPYG00000041433) #17	VGLL4 (ENSPPYG00000013652) #19	ENSPPYG00000013651	TIMP4 (ENSPPYG00000030141) #21	SYN2 (ENSPPYG00000013649) #20	PPARG (ENSPPYG00000013648) #22	TSEN2 (ENSPPYG00000013647) #25	MKRN2OS (ENSPPYG00000039535) #26	EPHA3 (ENSPPYG00000013646)	CSNKA2IP (ENSPPYG00000034142)	C3orf38 (ENSPPYG00000013644)	ZNF654 (ENSPPYG00000013643)	CGGBP1 (ENSPPYG00000031975)	POU1F1 (ENSPPYG00000013640)	CHMP2B (ENSPPYG00000013639)	VGLL3 (ENSPPYG00000013637)	ENSPPYG00000013636	CADM2 (ENSPPYG00000013635)	GBE1 (ENSPPYG00000025891)	ENSPPYG00000037849	ROBO1 (ENSPPYG00000013634)
Gibbon	MODERN SPECIES	13	IRAK2 (ENSNLEG00000004418)	TATDN2 (ENSNLEG00000004423)	GHRL (ENSNLEG00000004451) #8	SEC13 (ENSNLEG00000004482) #9	ENSNLEG00000026798 #10	SLC6A11 (ENSNLEG00000004525) #11	SLC6A1 (ENSNLEG00000026605) #12	ENSNLEG00000030870	HRH1 (ENSNLEG00000018917) #16	ATG7 (ENSNLEG00000027005) #17	VGLL4 (ENSNLEG00000004535) #19	ENSNLEG00000004559	TIMP4 (ENSNLEG00000004638) #21	ENSNLEG00000004578 #20	ENSNLEG00000029797	PPARG (ENSNLEG00000004650) #22	TSEN2 (ENSNLEG00000004696) #25	MKRN2OS (ENSNLEG00000030256) #26	MKRN2 (ENSNLEG00000004711) #27	RAF1 (ENSNLEG00000004732) #28	TMEM40 (ENSNLEG00000004755) #29	CAND2 (ENSNLEG00000004774) #30	ENSNLEG00000035616	ENSNLEG00000004798	IQSEC1 (ENSNLEG00000004793) #32	NUP210 (ENSNLEG00000004799) #33	HDAC11 (ENSNLEG00000004853) #34	FBLN2 (ENSNLEG00000004881) #35	ENSNLEG00000004941 #36	CHCHD4 (ENSNLEG00000029809)	TMEM43 (ENSNLEG00000004956) #37
Cercopithecidae	ANCESTRAL SPECIES	1	ENSGT00910000147532	ENSGT00390000004064 #8	ENSGT00940000153393.B.v #9	ENSGT00910000147252	ENSGT00940000161461 #10	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00390000013132.q.b	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00390000016970.h	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084.bb #28	ENSGT00390000017530 #29	ENSGT00390000017740.a.b #30	ENSGT00940000153973.c.a.a	ENSGT00940000156915 #32	ENSGT00390000009491.d #33	ENSGT00940000156308 #34	ENSGT00940000156047 #35	ENSGT00910000147988	ENSGT00940000158523 #36	ENSGT00390000013132.q.a.a	ENSGT00390000009671 #37
Cercopithecinae	ANCESTRAL SPECIES	5	ENSGT00940000154917.f	ENSGT00940000155616.c.a.e	ENSGT00390000004064 #8	ENSGT00940000153393.B.v #9	ENSGT00910000147252	ENSGT00940000161461 #10	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00390000013132.q.b	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084.bb #28	ENSGT00390000017530 #29	ENSGT00390000017740.a.b #30	ENSGT00940000153973.c.a.a	ENSGT00940000153973.c.a.b.b	ENSGT00940000156915 #32	ENSGT00390000009491.d #33	ENSGT00940000156308 #34	ENSGT00940000156047 #35	ENSGT00910000147988	ENSGT00940000158523 #36	ENSGT00390000013132.q.a.a
Cercopithecinae_a	ANCESTRAL SPECIES	5	ENSGT00390000004064 #8	ENSGT00940000153393.B.v #9	ENSGT00910000147252	ENSGT00940000161461 #10	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00390000013132.q.b	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00390000016970.h	ENSGT00390000009405.b.c.b.b	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084.bb #28	ENSGT00390000017530 #29	ENSGT00390000017740.a.b #30	ENSGT00940000153973.c.a.a.e.b	ENSGT00940000153973.c.a.b.b	ENSGT00940000156915 #32	ENSGT00390000009491.d #33	ENSGT00940000156308 #34	ENSGT00940000156047 #35	ENSGT00910000147988	ENSGT00940000158523 #36	ENSGT00390000013132.q.a.a
Macaca	ANCESTRAL SPECIES	5	ENSGT00940000154917.f	ENSGT00390000004064 #8	ENSGT00940000153393.B.v #9	ENSGT00940000161461 #10	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00390000013132.q.b	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00390000016970.h	ENSGT00390000009405.b.c.b.b	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084.bb #28	ENSGT00390000017530 #29	ENSGT00390000017740.a.b #30	ENSGT00940000153973.c.a.b.a.a	ENSGT00940000156915 #32	ENSGT00390000009491.d #33	ENSGT00940000156308 #34	ENSGT00940000156047 #35	ENSGT00940000158523 #36	ENSGT00390000013132.q.a.a	ENSGT00390000009671 #37	ENSGT00390000005194
Macaca_a	ANCESTRAL SPECIES	5	ENSGT00390000014353	ENSGT00940000159835	ENSGT00940000155616.c.a.e	ENSGT00390000004064 #8	ENSGT00940000153393.B.v #9	ENSGT00940000161461 #10	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT01100000263493.a.b.a.b.a.a.b.a.b.b.b.a.b.b.a.a.b.a.a	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084.bb #28	ENSGT00390000017530 #29	ENSGT00390000017740.a.b #30	ENSGT00940000153973.c.a.a.e.b	ENSGT00940000156915 #32	ENSGT00390000009491.d #33	ENSGT01100000263539.b.a.a.a.a.a.b.b.a.a.a.a.a.b.a.a.a.a.b ##15	ENSGT00940000156308 #34	ENSGT00940000156047 #35	ENSGT00940000158523 #36	ENSGT00390000013132.r	ENSGT00390000009671 #37
Crab-eating macaque	MODERN SPECIES	11	IRAK2 (ENSMFAG00000002038)	TATDN2 (ENSMFAG00000044226)	GHRL (ENSMFAG00000043669) #8	SEC13 (ENSMFAG00000037200) #9	ATP2B2 (ENSMFAG00000034151) #10	SLC6A11 (ENSMFAG00000034176) #11	SLC6A1 (ENSMFAG00000007438) #12	HRH1 (ENSMFAG00000030336) #16	ATG7 (ENSMFAG00000040779) #17	VGLL4 (ENSMFAG00000009745) #19	TAMM41 (ENSMFAG00000033931)	ENSMFAG00000059255	SYN2 (ENSMFAG00000041997) #20	ENSMFAG00000021078	TIMP4 (ENSMFAG00000052548) #21	PPARG (ENSMFAG00000034317) #22	TSEN2 (ENSMFAG00000038583) #25	MKRN2OS (ENSMFAG00000031892) #26	MKRN2 (ENSMFAG00000035845) #27	ENSMFAG00000051059	RAF1 (ENSMFAG00000038061) #28	TMEM40 (ENSMFAG00000039365) #29	CAND2 (ENSMFAG00000044298) #30	ENSMFAG00000045190	IQSEC1 (ENSMFAG00000043873) #32	NUP210 (ENSMFAG00000044461) #33	ENSMFAG00000058794 ##15	HDAC11 (ENSMFAG00000036363) #34	FBLN2 (ENSMFAG00000003835) #35	WNT7A (ENSMFAG00000044809) #36	ENSMFAG00000044351
Rhesus	MODERN SPECIES	11	IRAK2 (ENSMMUG00000019932)	TATDN2 (ENSMMUG00000019933)	GHRL (ENSMMUG00000065159) #8	SEC13 (ENSMMUG00000019936) #9	ATP2B2 (ENSMMUG00000019938) #10	SLC6A11 (ENSMMUG00000005916) #11	SLC6A1 (ENSMMUG00000005917) #12	HRH1 (ENSMMUG00000056308) #16	ATG7 (ENSMMUG00000021804) #17	VGLL4 (ENSMMUG00000021806) #19	ENSMMUG00000062782 ##15	TAMM41 (ENSMMUG00000013372)	ENSMMUG00000055179	SYN2 (ENSMMUG00000001120) #20	TIMP4 (ENSMMUG00000001127) #21	PPARG (ENSMMUG00000007191) #22	TSEN2 (ENSMMUG00000007195) #25	MKRN2OS (ENSMMUG00000031993) #26	MKRN2 (ENSMMUG00000009536) #27	RAF1 (ENSMMUG00000007450) #28	TMEM40 (ENSMMUG00000010276) #29	CAND2 (ENSMMUG00000001339) #30	RPL32 (ENSMMUG00000001340)	IQSEC1 (ENSMMUG00000001342) #32	NUP210 (ENSMMUG00000015979) #33	ENSMMUG00000056487 ##15	HDAC11 (ENSMMUG00000001369) #34	FBLN2 (ENSMMUG00000017659) #35	WNT7A (ENSMMUG00000018445) #36	XPC (ENSMMUG00000023125)	TMEM43 (ENSMMUG00000023124) #37
Pig-tailed macaque	MODERN SPECIES	546	ENSMNEG00000040281	GHRL (ENSMNEG00000043861) #8	SEC13 (ENSMNEG00000032098) #9	ATP2B2 (ENSMNEG00000040193) #10	SLC6A11 (ENSMNEG00000031997) #11	SLC6A1 (ENSMNEG00000031841) #12	ENSMNEG00000030516	HRH1 (ENSMNEG00000008240) #16	ATG7 (ENSMNEG00000028392) #17	VGLL4 (ENSMNEG00000039421) #19	TAMM41 (ENSMNEG00000040547)	ENSMNEG00000042157	ENSMNEG00000024024	SYN2 (ENSMNEG00000033226) #20	TIMP4 (ENSMNEG00000028992) #21	PPARG (ENSMNEG00000028217) #22	TSEN2 (ENSMNEG00000025898) #25	MKRN2OS (ENSMNEG00000034066) #26	MKRN2 (ENSMNEG00000031197) #27	RAF1 (ENSMNEG00000040519) #28	TMEM40 (ENSMNEG00000027829) #29	CAND2 (ENSMNEG00000044168) #30	RPL32 (ENSMNEG00000030893)	IQSEC1 (ENSMNEG00000042270) #32	ENSMNEG00000029455	NUP210 (ENSMNEG00000041495) #33	HDAC11 (ENSMNEG00000040546) #34	FBLN2 (ENSMNEG00000035537) #35	WNT7A (ENSMNEG00000037464) #36	ENSMNEG00000040402	TMEM43 (ENSMNEG00000032802) #37
Cercopithecinae_b	ANCESTRAL SPECIES		ENSGT00940000153393.B.v #9	ENSGT00910000147252	ENSGT00940000161461 #10	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00390000013132.q.b	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00390000016970.h	ENSGT00390000009405.b.c.b.b	ENSGT01100000263509.a.a.b.b.a.b.b.b.a.a.a.a.b.b	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084.bb #28	ENSGT00390000017530 #29	ENSGT00390000017740.a.b #30	ENSGT00940000153973.c.a.a.d	ENSGT00940000153973.c.a.b.b	ENSGT00940000156915 #32	ENSGT00390000009491.d #33	ENSGT00940000156308 #34	ENSGT00940000156047 #35	ENSGT00910000147988	ENSGT00940000158523 #36	ENSGT00390000013132.q.a.a
Olive baboon	MODERN SPECIES	11	IRAK2 (ENSPANG00000021438)	TATDN2 (ENSPANG00000008626)	GHRL (ENSPANG00000022005) #8	SEC13 (ENSPANG00000033927) #9	ATP2B2 (ENSPANG00000012883) #10	SLC6A11 (ENSPANG00000009913) #11	SLC6A1 (ENSPANG00000009643) #12	HRH1 (ENSPANG00000031157) #16	ATG7 (ENSPANG00000019142) #17	VGLL4 (ENSPANG00000024761) #19	TAMM41 (ENSPANG00000025444)	ENSPANG00000031360	ENSPANG00000045955	TIMP4 (ENSPANG00000001070) #21	SYN2 (ENSPANG00000024762) #20	PPARG (ENSPANG00000016461) #22	MKRN2OS (ENSPANG00000008481) #26	TSEN2 (ENSPANG00000013415) #25	MKRN2 (ENSPANG00000021307) #27	ENSPANG00000035680 #14	RAF1 (ENSPANG00000008568) #28	TMEM40 (ENSPANG00000014208) #29	CAND2 (ENSPANG00000018464) #30	ENSPANG00000007693	IQSEC1 (ENSPANG00000006877) #32	NUP210 (ENSPANG00000006878) #33	HDAC11 (ENSPANG00000024163) #34	ENSPANG00000047403 #35	ENSPANG00000007694 #35	WNT7A (ENSPANG00000046909) #36	CHCHD4 (ENSPANG00000025946)
Cercopithecinae_d	ANCESTRAL SPECIES	12	ENSGT00390000004064 #8	ENSGT00940000153393.B.v #9	ENSGT00910000147252	ENSGT00940000161461 #10	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00390000013132.q.b	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00390000016970.h	ENSGT00390000009405.b.c.b.b	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084.bb #28	ENSGT00390000017530 #29	ENSGT00390000017740.a.b #30	ENSGT00940000153973.c.a.b.b	ENSGT00940000156915 #32	ENSGT00390000009491.d #33	ENSGT00940000156308 #34	ENSGT00940000156047 #35	ENSGT00910000147988	ENSGT00940000158523 #36	ENSGT00390000013132.q.a.a	ENSGT00390000009671 #37
Drill	MODERN SPECIES	874														SYN2 (ENSMLEG00000030880) #20	TIMP4 (ENSMLEG00000040251) #21	PPARG (ENSMLEG00000043422) #22	TSEN2 (ENSMLEG00000038210) #25	MKRN2OS (ENSMLEG00000006675) #26	MKRN2 (ENSMLEG00000006880) #27	RAF1 (ENSMLEG00000029839) #28	ENSMLEG00000039626	TMEM40 (ENSMLEG00000039986) #29	CAND2 (ENSMLEG00000034596) #30	RPL32 (ENSMLEG00000033655)	IQSEC1 (ENSMLEG00000035708) #32	NUP210 (ENSMLEG00000038717) #33	HDAC11 (ENSMLEG00000038310) #34	FBLN2 (ENSMLEG00000040866) #35	WNT7A (ENSMLEG00000042427) #36	ENSMLEG00000031201	TMEM43 (ENSMLEG00000035818) #37
Sooty mangabey	MODERN SPECIES	650	GHRL (ENSCATG00000029881) #8	SEC13 (ENSCATG00000032325) #9	ATP2B2 (ENSCATG00000033513) #10	SLC6A11 (ENSCATG00000032556) #11	SLC6A1 (ENSCATG00000019250) #12	ENSCATG00000031939	HRH1 (ENSCATG00000000316) #16	ATG7 (ENSCATG00000034745) #17	VGLL4 (ENSCATG00000041543) #19	TAMM41 (ENSCATG00000033399)	ENSCATG00000031162	ENSCATG00000042881	SYN2 (ENSCATG00000031791) #20	TIMP4 (ENSCATG00000034145) #21	ENSCATG00000017268	PPARG (ENSCATG00000022947) #22	TSEN2 (ENSCATG00000031911) #25	MKRN2OS (ENSCATG00000040481) #26	MKRN2 (ENSCATG00000041591) #27	ENSCATG00000035852 #28	ENSCATG00000001547 ##14	ENSCATG00000031525	TMEM40 (ENSCATG00000027847) #29	CAND2 (ENSCATG00000038720) #30	RPL32 (ENSCATG00000038198)	IQSEC1 (ENSCATG00000037864) #32	NUP210 (ENSCATG00000035260) #33	HDAC11 (ENSCATG00000026123) #34	FBLN2 (ENSCATG00000038061) #35	ENSCATG00000033105	WNT7A (ENSCATG00000033711) #36
Vervet Monkey	MODERN SPECIES	14	VHL (ENSCSAG00000010113)	IRAK2 (ENSCSAG00000010087)	TATDN2 (ENSCSAG00000010035)	GHRL (ENSCSAG00000010031) #8	SEC13 (ENSCSAG00000010026) #9	ATP2B2 (ENSCSAG00000010018) #10	ENSCSAG00000010009	SLC6A11 (ENSCSAG00000009991) #11	SLC6A1 (ENSCSAG00000009912) #12	HRH1 (ENSCSAG00000018810) #16	ATG7 (ENSCSAG00000009887) #17	VGLL4 (ENSCSAG00000009873) #19	TAMM41 (ENSCSAG00000009866)	SYN2 (ENSCSAG00000009855) #20	TIMP4 (ENSCSAG00000009845) #21	PPARG (ENSCSAG00000009839) #22	TSEN2 (ENSCSAG00000009822) #25	MKRN2OS (ENSCSAG00000009764) #26	MKRN2 (ENSCSAG00000009754) #27	RAF1 (ENSCSAG00000009721) #28	TMEM40 (ENSCSAG00000009604) #29	CAND2 (ENSCSAG00000009557) #30	RPL32 (ENSCSAG00000009485)	IQSEC1 (ENSCSAG00000009482) #32	NUP210 (ENSCSAG00000009474) #33	HDAC11 (ENSCSAG00000009462) #34	FBLN2 (ENSCSAG00000009449) #35	WNT7A (ENSCSAG00000009439) #36	CHCHD4 (ENSCSAG00000009431)	TMEM43 (ENSCSAG00000009426) #37	XPC (ENSCSAG00000009411)
Rhinopithecus	DUPLICATION
Rhinopithecus	ANCESTRAL SPECIES																	ENSGT00940000158273.q #22
Black snub-nosed monkey	MODERN SPECIES	1208												TIMP4 (ENSRBIG00000032580) #21	SYN2 (ENSRBIG00000030722) #20	ENSRBIG00000029744	ENSRBIG00000036452	ENSRBIG00000033045 #22	UCK2 (ENSRBIG00000023390)	ENSRBIG00000028586
Rhinopithecus	ANCESTRAL SPECIES	113	ENSGT00390000004064 #8	ENSGT00940000153393.B.v #9	ENSGT00940000161461 #10	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00910000148795	ENSGT00390000013132.q.b	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00910000148924	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00390000016970.h	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273.r #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084.bb #28
Black snub-nosed monkey	MODERN SPECIES	1833																PPARG (ENSRBIG00000042269) #22	TSEN2 (ENSRBIG00000033133) #25	MKRN2OS (ENSRBIG00000033018) #26	MKRN2 (ENSRBIG00000039128) #27	ENSRBIG00000029284 #28	ENSRBIG00000027349
Golden snub-nosed monkey	MODERN SPECIES	2016			SEC13 (ENSRROG00000040800) #9	ATP2B2 (ENSRROG00000033593) #10	SLC6A11 (ENSRROG00000031463) #11	SLC6A1 (ENSRROG00000040161) #12	ENSRROG00000044510	HRH1 (ENSRROG00000012382) #16	ATG7 (ENSRROG00000041008) #17	ENSRROG00000038335	VGLL4 (ENSRROG00000032842) #19	TAMM41 (ENSRROG00000034628)	ENSRROG00000042628	SYN2 (ENSRROG00000040768) #20	TIMP4 (ENSRROG00000043357) #21	PPARG (ENSRROG00000044807) #22	ENSRROG00000034587	TSEN2 (ENSRROG00000041156) #25	MKRN2OS (ENSRROG00000037999) #26	MKRN2 (ENSRROG00000033767) #27	ENSRROG00000041930 #28
Tarsier	MODERN SPECIES	5029														PM20D2 (ENSTSYG00000027051)	GABRR1 (ENSTSYG00000033942)	PPARG (ENSTSYG00000006950) #22	TSEN2 (ENSTSYG00000010816) #25	MKRN2OS (ENSTSYG00000029616) #26	ENSTSYG00000030920	MKRN2 (ENSTSYG00000007429) #27	RAF1 (ENSTSYG00000007438) #28
Strepsirrhini	ANCESTRAL SPECIES	1	ENSGT00390000011082	ENSGT00390000014353	ENSGT00940000159835	ENSGT00940000155616.c.a	ENSGT00390000004064 #8	ENSGT00940000153393.B #9	ENSGT00940000161461 #10	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00390000017530 #29	ENSGT00390000017740.a.b #30	ENSGT00940000153973.c.a.a	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951
Lemuriformes	ANCESTRAL SPECIES	76	ENSGT00940000156047 #35	ENSGT00940000156308 #34	ENSGT00390000009491.d #33	ENSGT00940000156915 #32	ENSGT00940000157312	ENSGT00910000147252	ENSGT00940000161461 #10	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00390000017530 #29	ENSGT00390000017740.a.b #30	ENSGT00940000153973.c.a.a	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a
Mouse lemur	MODERN SPECIES	15	HDAC11 (ENSMICG00000014219) #34	NUP210 (ENSMICG00000014165) #33	ENSMICG00000007742	IQSEC1 (ENSMICG00000002633) #32	ACAD9 (ENSMICG00000007418)	ATP2B2 (ENSMICG00000002406) #10	SLC6A11 (ENSMICG00000033698) #11	SLC6A1 (ENSMICG00000003055) #12	ATG7 (ENSMICG00000016547) #17	ENSMICG00000035458	VGLL4 (ENSMICG00000016559) #19	TAMM41 (ENSMICG00000016586)	ENSMICG00000012731	SYN2 (ENSMICG00000003565) #20	TIMP4 (ENSMICG00000045817) #21	PPARG (ENSMICG00000016663) #22	TSEN2 (ENSMICG00000016672) #25	MKRN2OS (ENSMICG00000038087) #26	MKRN2 (ENSMICG00000012164) #27	RAF1 (ENSMICG00000012172) #28	ENSMICG00000033639	TMEM40 (ENSMICG00000003715) #29	CAND2 (ENSMICG00000041434) #30	ENSMICG00000034607	EFCAB12 (ENSMICG00000008010)	MBD4 (ENSMICG00000008022)	IFT122 (ENSMICG00000008033)	RHO (ENSMICG00000047910)	H1-8 (ENSMICG00000030377)	PLXND1 (ENSMICG00000008079)	ENSMICG00000028823
Lemuriformes_a	ANCESTRAL SPECIES	162			ENSGT00390000009491.d #33	ENSGT00940000156915 #32	ENSGT00940000157312	ENSGT00910000147252	ENSGT00940000161461 #10	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00390000017530 #29	ENSGT00390000017740.a.b #30	ENSGT00940000153973.c.a.a	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a
Greater bamboo lemur	MODERN SPECIES	130								SLC6A11 (ENSPSMG00000025382) #11	SLC6A1 (ENSPSMG00000025445) #12	HRH1 (ENSPSMG00000000102) #16	ATG7 (ENSPSMG00000000247) #17	VGLL4 (ENSPSMG00000000320) #19	TAMM41 (ENSPSMG00000000346)	SYN2 (ENSPSMG00000000398) #20	TIMP4 (ENSPSMG00000000419) #21	PPARG (ENSPSMG00000000463) #22	TSEN2 (ENSPSMG00000000537) #25	MKRN2OS (ENSPSMG00000000584) #26	MKRN2 (ENSPSMG00000000636) #27	RAF1 (ENSPSMG00000000725) #28	TMEM40 (ENSPSMG00000000837) #29	ENSPSMG00000000888	CAND2 (ENSPSMG00000000926) #30	ENSPSMG00000000953	EFCAB12 (ENSPSMG00000000969)	MBD4 (ENSPSMG00000001016)	IFT122 (ENSPSMG00000001543)	RHO (ENSPSMG00000002457)	H1-8 (ENSPSMG00000002466)	ENSPSMG00000002470
Coquerels sifaka	MODERN SPECIES	614			NUP210 (ENSPCOG00000026371) #33	ENSPCOG00000026952	IQSEC1 (ENSPCOG00000022781) #32	ACAD9 (ENSPCOG00000028509)	ENSPCOG00000027035	ATP2B2 (ENSPCOG00000022973) #10	SLC6A11 (ENSPCOG00000012550) #11	SLC6A1 (ENSPCOG00000027376) #12	ATG7 (ENSPCOG00000021597) #17	VGLL4 (ENSPCOG00000016845) #19	TAMM41 (ENSPCOG00000021554)	TIMP4 (ENSPCOG00000025232) #21	SYN2 (ENSPCOG00000020181) #20	PPARG (ENSPCOG00000017510) #22	TSEN2 (ENSPCOG00000019328) #25	MKRN2OS (ENSPCOG00000027519) #26	MKRN2 (ENSPCOG00000013481) #27	RAF1 (ENSPCOG00000013436) #28	ENSPCOG00000024646	TMEM40 (ENSPCOG00000027785) #29	CAND2 (ENSPCOG00000020368) #30	ENSPCOG00000026378	EFCAB12 (ENSPCOG00000020532)	ENSPCOG00000018583	IFT122 (ENSPCOG00000023934)	RHO (ENSPCOG00000024236)	H1-8 (ENSPCOG00000024479)	PLXND1 (ENSPCOG00000027312)
Bushbaby	MODERN SPECIES	216								HRH1 (ENSOGAG00000016172) #16	ATG7 (ENSOGAG00000016175) #17	VGLL4 (ENSOGAG00000016184) #19	TAMM41 (ENSOGAG00000030657)	ENSOGAG00000031076	ENSOGAG00000006595	TIMP4 (ENSOGAG00000016704) #21	SYN2 (ENSOGAG00000016700) #20	PPARG (ENSOGAG00000002971) #22	ENSOGAG00000002976 #25	MKRN2OS (ENSOGAG00000031425) #26	MKRN2 (ENSOGAG00000003255) #27	RAF1 (ENSOGAG00000003256) #28	TMEM40 (ENSOGAG00000003261) #29	CAND2 (ENSOGAG00000028928) #30	RPL32 (ENSOGAG00000028498)	ENSOGAG00000010234	MBD4 (ENSOGAG00000010236)	IFT122 (ENSOGAG00000010245)	RHO (ENSOGAG00000010259)	PLXND1 (ENSOGAG00000010266)	ENSOGAG00000032612	TMCC1 (ENSOGAG00000010283)	ENSOGAG00000031381
Euarchontoglires_A	ANCESTRAL SPECIES	2	ENSGT00390000014353	ENSGT00940000159835	ENSGT01090000263461	ENSGT00940000155616.c.a	ENSGT00390000004064 #8	ENSGT00940000153393.B #9	ENSGT00940000161461 #10	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00390000017530 #29	ENSGT00390000017740.a.b #30	ENSGT00940000153973.c.a.a	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951
Tree shrew	MODERN SPECIES	1420																PPARG (ENSTBEG00000011278) #22
Glires	ANCESTRAL SPECIES	2	ENSGT00390000014353	ENSGT00940000159835	ENSGT01090000263461	ENSGT00940000155616.c.a	ENSGT00390000004064 #8	ENSGT00940000153393.B #9	ENSGT00940000161461 #10	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00390000017530 #29	ENSGT00390000017740.a.b #30	ENSGT00940000153973.c.a.a	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951
Lagomorpha	ANCESTRAL SPECIES	105									ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00390000017530 #29	ENSGT00390000017740.a.b #30	ENSGT00940000153973.c.a.b.b	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000175447	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951
Rabbit	MODERN SPECIES	20	EXOSC7 (ENSOCUG00000000939)	ENSOCUG00000036909	CDCP1 (ENSOCUG00000006910)	LARS2 (ENSOCUG00000001964)	ENSOCUG00000024922	LIMD1 (ENSOCUG00000001984)	SACM1L (ENSOCUG00000026080)	SLC6A20 (ENSOCUG00000004216)	LZTFL1 (ENSOCUG00000010140)	SLC6A11 (ENSOCUG00000001627) #11	ENSOCUG00000025657 #12	ATG7 (ENSOCUG00000001908) #17	VGLL4 (ENSOCUG00000001911) #19	TIMP4 (ENSOCUG00000015952) #21	ENSOCUG00000015932 #20	PPARG (ENSOCUG00000013194) #22	TSEN2 (ENSOCUG00000013203) #25	MKRN2OS (ENSOCUG00000033126) #26	MKRN2 (ENSOCUG00000014171) #27	RAF1 (ENSOCUG00000014175) #28	ENSOCUG00000031173 #29	CAND2 (ENSOCUG00000009266) #30	ENSOCUG00000023407	ENSOCUG00000012999	MBD4 (ENSOCUG00000013006)	IFT122 (ENSOCUG00000013015)	RHO (ENSOCUG00000013036)	ENSOCUG00000029379	PLXND1 (ENSOCUG00000013049)	TMCC1 (ENSOCUG00000013071)	TRH (ENSOCUG00000006337)
Pika	MODERN SPECIES	1896													TAMM41 (ENSOPRG00000003357)	SYN2 (ENSOPRG00000003375) #20	TIMP4 (ENSOPRG00000003424) #21	PPARG (ENSOPRG00000003439) #22	TSEN2 (ENSOPRG00000003456) #25	MKRN2 (ENSOPRG00000003501) #27	RAF1 (ENSOPRG00000003522) #28	ENSOPRG00000003562 #30
Rodentia	ANCESTRAL SPECIES	2	ENSGT00390000014353	ENSGT00940000159835	ENSGT01090000263461	ENSGT00940000155616.c.a	ENSGT00390000004064 #8	ENSGT00940000153393.B #9	ENSGT00940000161461 #10	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00390000017530 #29	ENSGT00390000017740.a.b #30	ENSGT00940000153973.c.a.a	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951
Rodentia_A	ANCESTRAL SPECIES	27	ENSGT00390000011082	ENSGT00390000014353	ENSGT00940000159835	ENSGT00940000155616.c.a	ENSGT00390000004064 #8	ENSGT00940000153393.B #9	ENSGT00940000161461 #10	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00390000017530 #29	ENSGT00390000017740.a.b #30	ENSGT00940000153973.c.a.a	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951
Hystricomorpha	ANCESTRAL SPECIES	80								ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #25
Naked mole-rat female	MODERN SPECIES	27	RSU1 (ENSHGLG00000007044)	C1QL3 (ENSHGLG00000043979)	PTER (ENSHGLG00000038711)	MINDY3 (ENSHGLG00000009019)	ENSHGLG00000005190	ENSHGLG00000034057	ENSHGLG00000033153	ENSHGLG00000032877	ENSHGLG00000047988	ENSHGLG00000006325 #36	FBLN2 (ENSHGLG00000007070) #35	HDAC11 (ENSHGLG00000007401) #34	ENSHGLG00000008376 #33	ENSHGLG00000000808 #20	ENSHGLG00000049460 #21	PPARG (ENSHGLG00000000775) #22	ENSHGLG00000000740 #25	ENSHGLG00000041351	ENSHGLG00000000350 #11	ENSHGLG00000045274 #12	HRH1 (ENSHGLG00000044045) #16	ENSHGLG00000002369 #19	ENSHGLG00000000122	ENSHGLG00000000094	ENSHGLG00000037886	DNAJB8 (ENSHGLG00000046802)	GATA2 (ENSHGLG00000000985)	ENSHGLG00000000920	ENSHGLG00000039046	ENSHGLG00000019586	ENSHGLG00000032284
Hystricomorpha_a	ANCESTRAL SPECIES	88								ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #25
Guinea pig	MODERN SPECIES	123							ENSCPOG00000039667	SLC6A11 (ENSCPOG00000007809) #11	SLC6A1 (ENSCPOG00000025521) #12	HRH1 (ENSCPOG00000002743) #16	ATG7 (ENSCPOG00000002744) #17	VGLL4 (ENSCPOG00000007715) #19	TAMM41 (ENSCPOG00000009163)	TIMP4 (ENSCPOG00000021191) #21	SYN2 (ENSCPOG00000008208) #20	PPARG (ENSCPOG00000002043) #22	ENSCPOG00000007932 #25	AKR1E2 (ENSCPOG00000037608)	ENSCPOG00000007548	ENSCPOG00000003089	ENSCPOG00000000371	ENSCPOG00000025134	ENSCPOG00000038290	ENSCPOG00000037816	FER (ENSCPOG00000004104)
Hystricomorpha_b	ANCESTRAL SPECIES	129								ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #25
Degu	MODERN SPECIES	274	ENSODEG00000002891	CAND2 (ENSODEG00000002821) #30	TMEM40 (ENSODEG00000002755) #29	RAF1 (ENSODEG00000002734) #28	MKRN2 (ENSODEG00000002702) #27	MKRN2OS (ENSODEG00000002688) #26	ENSODEG00000002676	SLC6A11 (ENSODEG00000002665) #11	SLC6A1 (ENSODEG00000002644) #12	ATG7 (ENSODEG00000002299) #17	ENSODEG00000002124 #19	ENSODEG00000018794	TAMM41 (ENSODEG00000002076)	TIMP4 (ENSODEG00000002023) #21	ENSODEG00000001988 #20	PPARG (ENSODEG00000002659) #22	TSEN2 (ENSODEG00000002629) #25	ENSODEG00000002503	HMCES (ENSODEG00000002476)	ENSODEG00000018801	ENSODEG00000002441	ENSODEG00000002418	ISY1 (ENSODEG00000002067)	ENSODEG00000001984	ENSODEG00000001903	ENSODEG00000001865
Long-tailed chinchilla	MODERN SPECIES	136	RAB43 (ENSCLAG00000009081)	ISY1 (ENSCLAG00000007518)	CNBP (ENSCLAG00000009193)	COPG1 (ENSCLAG00000008392)	HMCES (ENSCLAG00000007708)	H1-10 (ENSCLAG00000008312)	ENSCLAG00000009239	SLC6A11 (ENSCLAG00000005159) #11	SLC6A1 (ENSCLAG00000004934) #12	HRH1 (ENSCLAG00000017680) #16	ATG7 (ENSCLAG00000012476) #17	VGLL4 (ENSCLAG00000011019) #19	TAMM41 (ENSCLAG00000013323)	ENSCLAG00000005221 #20	TIMP4 (ENSCLAG00000005949) #21	PPARG (ENSCLAG00000014746) #22	TSEN2 (ENSCLAG00000011090) #25	ENSCLAG00000006333	RPN1 (ENSCLAG00000016036)	GATA2 (ENSCLAG00000014980)	DNAJB8 (ENSCLAG00000006709)	EEFSEC (ENSCLAG00000006973)	RUVBL1 (ENSCLAG00000008051)	SEC61A1 (ENSCLAG00000004789)	KBTBD12 (ENSCLAG00000006214)	MGLL (ENSCLAG00000010527)	ABTB1 (ENSCLAG00000010398)	PODXL2 (ENSCLAG00000011183)	MCM2 (ENSCLAG00000013539)	TPRA1 (ENSCLAG00000015612)	PLXNA1 (ENSCLAG00000007472)
Sciuridae	ANCESTRAL SPECIES	41	ENSGT00390000011082	ENSGT00390000014353	ENSGT00940000159835	ENSGT00940000155616.c.a	ENSGT00390000004064 #8	ENSGT00940000153393.B #9	ENSGT00940000161461 #10	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00390000017530 #29	ENSGT00390000017740.a.b #30	ENSGT00940000153973.c.a.a	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951
Marmotini	ANCESTRAL SPECIES	49	ENSGT00390000014353	ENSGT00940000159835	ENSGT00940000155616.c.a	ENSGT00390000004064 #8	ENSGT00940000153393.B #9	ENSGT00940000161461 #10	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00960000190360	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00390000017530 #29	ENSGT00390000017740.a.b #30	ENSGT00940000153973.c.a.a	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951
Marmotini_b	ANCESTRAL SPECIES	62	ENSGT00390000014353	ENSGT00940000159835	ENSGT00940000155616.c.a	ENSGT00390000004064 #8	ENSGT00940000153393.B #9	ENSGT00940000161461 #10	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00960000190360	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00390000017530 #29	ENSGT00390000017740.a.b #30	ENSGT00940000153973.c.a.a	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951
Arctic ground squirrel	MODERN SPECIES	23	BRK1 (ENSUPAG00010022984)	IRAK2 (ENSUPAG00010022988)	TATDN2 (ENSUPAG00010022994)	GHRL (ENSUPAG00010022997) #8	SEC13 (ENSUPAG00010022998) #9	ATP2B2 (ENSUPAG00010022999) #10	SLC6A11 (ENSUPAG00010023004) #11	SLC6A1 (ENSUPAG00010023006) #12	ENSUPAG00010023009	HRH1 (ENSUPAG00010023010) #16	ATG7 (ENSUPAG00010023011) #17	VGLL4 (ENSUPAG00010023024) #19	ENSUPAG00010023027	SYN2 (ENSUPAG00010023028) #20	TIMP4 (ENSUPAG00010023029) #21	PPARG (ENSUPAG00010023031) #22	TSEN2 (ENSUPAG00010023034) #25	MKRN2OS (ENSUPAG00010023035) #26	MKRN2 (ENSUPAG00010023036) #27	RAF1 (ENSUPAG00010023038) #28	TMEM40 (ENSUPAG00010023040) #29	CAND2 (ENSUPAG00010023044) #30	ENSUPAG00010023046	EFCAB12 (ENSUPAG00010023049)	ENSUPAG00010023052	ENSUPAG00010023053	IFT122 (ENSUPAG00010023058)	RHO (ENSUPAG00010023066)	H1-8 (ENSUPAG00010023069)	PLXND1 (ENSUPAG00010000023)	TMCC1 (ENSUPAG00010000491)
Squirrel	MODERN SPECIES	202	BRK1 (ENSSTOG00000013945)	ENSSTOG00000013959	IRAK2 (ENSSTOG00000013972)	TATDN2 (ENSSTOG00000013999)	GHRL (ENSSTOG00000022095) #8	SEC13 (ENSSTOG00000014017) #9	ATP2B2 (ENSSTOG00000014026) #10	SLC6A11 (ENSSTOG00000028999) #11	SLC6A1 (ENSSTOG00000007598) #12	HRH1 (ENSSTOG00000015286) #16	ATG7 (ENSSTOG00000015288) #17	VGLL4 (ENSSTOG00000025247) #19	ENSSTOG00000028589	TIMP4 (ENSSTOG00000034531) #21	SYN2 (ENSSTOG00000011519) #20	PPARG (ENSSTOG00000012778) #22	TSEN2 (ENSSTOG00000000538) #25	MKRN2OS (ENSSTOG00000031428) #26	MKRN2 (ENSSTOG00000010520) #27	RAF1 (ENSSTOG00000025146) #28	CAND2 (ENSSTOG00000023136) #30	ENSSTOG00000026505	MBD4 (ENSSTOG00000020663)	IFT122 (ENSSTOG00000004353)	RHO (ENSSTOG00000028352)	PLXND1 (ENSSTOG00000024621)	TMCC1 (ENSSTOG00000019869)	TRH (ENSSTOG00000026247)	RBSN (ENSSTOG00000022986)	MRPS25 (ENSSTOG00000030962)	NR2C2 (ENSSTOG00000005250)
Alpin marmot	MODERN SPECIES	40	IRAK2 (ENSMMMG00000009442)	ENSMMMG00000009508	GHRL (ENSMMMG00000009514) #8	SEC13 (ENSMMMG00000009563) #9	ATP2B2 (ENSMMMG00000009587) #10	SLC6A11 (ENSMMMG00000009836) #11	SLC6A1 (ENSMMMG00000009856) #12	ENSMMMG00000009895	HRH1 (ENSMMMG00000009921) #16	ENSMMMG00000009925	ATG7 (ENSMMMG00000009966) #17	VGLL4 (ENSMMMG00000010304) #19	TAMM41 (ENSMMMG00000010322)	SYN2 (ENSMMMG00000010440) #20	ENSMMMG00000010687 #21	PPARG (ENSMMMG00000010840) #22	ENSMMMG00000010899 #25	ENSMMMG00000010907 #25	MKRN2OS (ENSMMMG00000010915) #26	MKRN2 (ENSMMMG00000010927) #27	ENSMMMG00000010950	RAF1 (ENSMMMG00000010957) #28	ENSMMMG00000010993 #30	ENSMMMG00000010997	EFCAB12 (ENSMMMG00000011023)	MBD4 (ENSMMMG00000011043)	IFT122 (ENSMMMG00000011068)	RHO (ENSMMMG00000011272)	ENSMMMG00000011299	ENSMMMG00000011319	TMCC1 (ENSMMMG00000011365)
Eurasian red squirrel	MODERN SPECIES	10	IRAK2 (ENSSVLG00005024086)	ENSSVLG00005024064	TATDN2 (ENSSVLG00005024031)	GHRL (ENSSVLG00005023970) #8	SEC13 (ENSSVLG00005023877) #9	ATP2B2 (ENSSVLG00005022802) #10	SLC6A11 (ENSSVLG00005022396) #11	SLC6A1 (ENSSVLG00005021844) #12	HRH1 (ENSSVLG00005021749) #16	ATG7 (ENSSVLG00005021683) #17	VGLL4 (ENSSVLG00005021566) #19	ENSSVLG00005021494	TAMM41 (ENSSVLG00005021448)	TIMP4 (ENSSVLG00005021374) #21	SYN2 (ENSSVLG00005021130) #20	PPARG (ENSSVLG00005020780) #22	TSEN2 (ENSSVLG00005020543) #25	MKRN2OS (ENSSVLG00005020454) #26	MKRN2 (ENSSVLG00005020340) #27	ENSSVLG00005019978 #28	TMEM40 (ENSSVLG00005019760) #29	CAND2 (ENSSVLG00005019570) #30	ENSSVLG00005019450	EFCAB12 (ENSSVLG00005019404)	MBD4 (ENSSVLG00005019308)	IFT122 (ENSSVLG00005018941)	RHO (ENSSVLG00005018827)	ENSSVLG00005018771	PLXND1 (ENSSVLG00005018384)	TMCC1 (ENSSVLG00005018250)	ENSSVLG00005018231
Rodentia_B	ANCESTRAL SPECIES	26	ENSGT00390000014353	ENSGT00940000159835	ENSGT01090000263461	ENSGT00940000155616.c.a	ENSGT00390000004064 #8	ENSGT00940000153393.B #9	ENSGT00940000161461 #10	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00390000017530 #29	ENSGT00390000017740.a.b #30	ENSGT00940000153973.c.a.a	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951
Kangaroo rat	MODERN SPECIES	331	Fancd2os (ENSDORG00000001146)	ENSDORG00000024837	Vhl (ENSDORG00000015401)	Irak2 (ENSDORG00000012277)	Tatdn2 (ENSDORG00000012279)	Ghrl (ENSDORG00000012281) #8	Sec13 (ENSDORG00000015327) #9	Atp2b2 (ENSDORG00000015330) #10	Slc6a11 (ENSDORG00000016390) #11	Slc6a1 (ENSDORG00000016380) #12	Atg7 (ENSDORG00000004380) #17	Vgll4 (ENSDORG00000004378) #19	Tamm41 (ENSDORG00000002091)	Timp4 (ENSDORG00000009509) #21	ENSDORG00000009507 #20	Pparg (ENSDORG00000003445) #22	Tsen2 (ENSDORG00000003395) #25	Mkrn2os (ENSDORG00000028573) #26	Mkrn2 (ENSDORG00000015621) #27	Raf1 (ENSDORG00000015622) #28	ENSDORG00000023579 #29	Cand2 (ENSDORG00000008424) #30	Rpl32 (ENSDORG00000008426)	ENSDORG00000000902	Ift122 (ENSDORG00000000906)	Rho (ENSDORG00000000911)	ENSDORG00000026967	Plxnd1 (ENSDORG00000000912)	Tmcc1 (ENSDORG00000026595)	Rbsn (ENSDORG00000009815)	Mrps25 (ENSDORG00000026838)
Myomorpha	ANCESTRAL SPECIES	36	ENSGT00390000014353	ENSGT00940000159835	ENSGT01090000263461	ENSGT00940000155616.c.a	ENSGT00390000004064 #8	ENSGT00940000153393.B #9	ENSGT00940000161461 #10	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00390000017530 #29	ENSGT00390000017740.a.b #30	ENSGT00940000153973.c.a.a	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951
Lesser Egyptian jerboa	MODERN SPECIES	45	Erap1 (ENSJJAG00000010373)	Lnpep (ENSJJAG00000012174)	Lix1 (ENSJJAG00000023046)	Ghrl (ENSJJAG00000020141) #8	Sec13 (ENSJJAG00000023600) #9	Atp2b2 (ENSJJAG00000009628) #10	Slc6a11 (ENSJJAG00000008690) #11	Slc6a1 (ENSJJAG00000013717) #12	Hrh1 (ENSJJAG00000012905) #16	Atg7 (ENSJJAG00000021264) #17	Vgll4 (ENSJJAG00000017532) #19	Tamm41 (ENSJJAG00000015841)	Timp4 (ENSJJAG00000015654) #21	ENSJJAG00000015072 #20	ENSJJAG00000012036	Pparg (ENSJJAG00000023734) #22	ENSJJAG00000002861 #25	ENSJJAG00000015646	Mkrn2os (ENSJJAG00000022652) #26	Mkrn2 (ENSJJAG00000019765) #27	ENSJJAG00000016961 #28	Tmem40 (ENSJJAG00000009444) #29	Cand2 (ENSJJAG00000018247) #30	ENSJJAG00000021233	ENSJJAG00000016695	Ift122 (ENSJJAG00000020288)	Rho (ENSJJAG00000022285)	ENSJJAG00000014828	Plxnd1 (ENSJJAG00000014069)	ENSJJAG00000020659	Tmcc1 (ENSJJAG00000019999)
Muroidea	ANCESTRAL SPECIES	37	ENSGT00390000014353	ENSGT00940000159835	ENSGT01090000263461	ENSGT00940000155616.c.a	ENSGT00390000004064 #8	ENSGT00940000153393.B #9	ENSGT00940000161461 #10	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00390000017530 #29	ENSGT00390000017740.a.b #30	ENSGT00940000153973.c.a.a	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951
Upper Galilee mountains blind mole rat	MODERN SPECIES	1707	Brk1 (ENSNGAG00000024317)	Vhl (ENSNGAG00000000823)	Irak2 (ENSNGAG00000011088)	Tatdn2 (ENSNGAG00000011523)	Ghrl (ENSNGAG00000022045) #8	Sec13 (ENSNGAG00000003425) #9	Atp2b2 (ENSNGAG00000015473) #10	Slc6a11 (ENSNGAG00000013842) #11	Slc6a1 (ENSNGAG00000015663) #12	Hrh1 (ENSNGAG00000021456) #16	ENSNGAG00000003030	Vgll4 (ENSNGAG00000013946) #19	Tamm41 (ENSNGAG00000013592)	Syn2 (ENSNGAG00000022266) #20	Timp4 (ENSNGAG00000021746) #21	Pparg (ENSNGAG00000014683) #22	ENSNGAG00000013561 #25	Mkrn2os (ENSNGAG00000019573) #26	Mkrn2 (ENSNGAG00000012579) #27	Raf1 (ENSNGAG00000019548) #28	Tmem40 (ENSNGAG00000021850) #29	Cand2 (ENSNGAG00000024002) #30	ENSNGAG00000024001	Efcab12 (ENSNGAG00000008314)	ENSNGAG00000017381	Ift122 (ENSNGAG00000022462)	Rho (ENSNGAG00000020656)	H1f8 (ENSNGAG00000023630)	Plxnd1 (ENSNGAG00000020476)	Tmcc1 (ENSNGAG00000010573)	Trh (ENSNGAG00000022332)
Muroidea_A	ANCESTRAL SPECIES	4	ENSGT00390000014353	ENSGT00940000159835	ENSGT01090000263461	ENSGT00940000155616.c.a	ENSGT00390000004064 #8	ENSGT00940000153393.B #9	ENSGT00940000161461 #10	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00390000017530 #29	ENSGT00390000017740.a.b #30	ENSGT00940000153973.c.a.a	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00940000153997.b.a.a
Murinae	ANCESTRAL SPECIES	4	ENSGT00390000014353	ENSGT00940000159835	ENSGT01090000263461	ENSGT00940000155616.c.a	ENSGT00390000004064 #8	ENSGT00940000153393.B #9	ENSGT00940000161461 #10	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00390000017530 #29	ENSGT00390000017740.a.b #30	ENSGT00940000153973.c.a.a	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00940000153997.b.a.a
Mus	ANCESTRAL SPECIES	12	ENSGT00390000014353	ENSGT00940000159835	ENSGT01090000263461	ENSGT00940000155616.c.a	ENSGT00390000004064 #8	ENSGT00940000153393.B #9	ENSGT00940000161461 #10	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00390000017530 #29	ENSGT00390000017740.a.b #30	ENSGT00940000153973.c.a.a	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00940000153997.b.a.a
Mus_A	ANCESTRAL SPECIES	7	ENSGT00390000014353	ENSGT00940000159835	ENSGT01090000263461	ENSGT00940000155616.c.a	ENSGT00390000004064 #8	ENSGT00940000153393.B #9	ENSGT00940000161461 #10	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00390000017530 #29	ENSGT00390000017740.a.b #30	ENSGT00940000153973.c.a.a	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00940000153997.b.a.a
Mus_B	ANCESTRAL SPECIES	15	ENSGT00390000014353	ENSGT00940000159835	ENSGT01090000263461	ENSGT00940000155616.c.a	ENSGT00390000004064 #8	ENSGT00940000153393.B #9	ENSGT00940000161461 #10	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00390000017530 #29	ENSGT00390000017740.a.b #30	ENSGT00940000153973.c.a.a	ENSGT00940000153973.c.a.b.b	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189
Mouse	MODERN SPECIES	15	Vhl (ENSMUSG00000033933)	Irak2 (ENSMUSG00000060477)	Tatdn2 (ENSMUSG00000056952)	ENSMUSG00000121578	Ghrl (ENSMUSG00000064177) #8	Sec13 (ENSMUSG00000030298) #9	Atp2b2 (ENSMUSG00000030302) #10	Slc6a11 (ENSMUSG00000030307) #11	Slc6a1 (ENSMUSG00000030310) #12	Hrh1 (ENSMUSG00000053004) #16	Atg7 (ENSMUSG00000030314) #17	Vgll4 (ENSMUSG00000030315) #19	Tamm41 (ENSMUSG00000030316)	Syn2 (ENSMUSG00000009394) #20	Timp4 (ENSMUSG00000030317) #21	Pparg (ENSMUSG00000000440) #22	Tsen2 (ENSMUSG00000042389) #25	Mkrn2os (ENSMUSG00000068011) #26	Mkrn2 (ENSMUSG00000000439) #27	Raf1 (ENSMUSG00000000441) #28	Tmem40 (ENSMUSG00000059900) #29	Cand2 (ENSMUSG00000030319) #30	Rpl32 (ENSMUSG00000057841)	Efcab12 (ENSMUSG00000030321)	Mbd4 (ENSMUSG00000030322)	Ift122 (ENSMUSG00000030323)	Rho (ENSMUSG00000030324)	H1f8 (ENSMUSG00000042279)	Plxnd1 (ENSMUSG00000030123)	Tmcc1 (ENSMUSG00000030126)	Washc2 (ENSMUSG00000024104)
Mus_C	ANCESTRAL SPECIES	18	ENSGT00390000011082	ENSGT00390000014353	ENSGT00940000159835	ENSGT00940000155616.c.a	ENSGT00390000004064 #8	ENSGT00940000153393.B #9	ENSGT00940000161461 #10	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00390000017530 #29	ENSGT00390000017740.a.b #30	ENSGT00940000153973.c.a.a	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00940000153997.b.a.a
spretus	MODERN SPECIES	15	Vhl (MGP_SPRETEiJ_G0029764)	Irak2 (MGP_SPRETEiJ_G0029765)	Tatdn2 (MGP_SPRETEiJ_G0029766)	Ghrl (MGP_SPRETEiJ_G0029767) #8	Sec13 (MGP_SPRETEiJ_G0029768) #9	Atp2b2 (MGP_SPRETEiJ_G0029769) #10	Slc6a11 (MGP_SPRETEiJ_G0029770) #11	Slc6a1 (MGP_SPRETEiJ_G0029771) #12	Hrh1 (MGP_SPRETEiJ_G0029772) #16	Atg7 (MGP_SPRETEiJ_G0029773) #17	Vgll4 (MGP_SPRETEiJ_G0029774) #19	Tamm41 (MGP_SPRETEiJ_G0029775)	Syn2 (MGP_SPRETEiJ_G0029776) #20	MGP_SPRETEiJ_G0029777	Timp4 (MGP_SPRETEiJ_G0029778) #21	Pparg (MGP_SPRETEiJ_G0029779) #22	Tsen2 (MGP_SPRETEiJ_G0029780) #25	Mkrn2os (MGP_SPRETEiJ_G0029781) #26	Mkrn2 (MGP_SPRETEiJ_G0029782) #27	Raf1 (MGP_SPRETEiJ_G0029783) #28	Tmem40 (MGP_SPRETEiJ_G0029784) #29	Cand2 (MGP_SPRETEiJ_G0029785) #30	MGP_SPRETEiJ_G0029786	Efcab12 (MGP_SPRETEiJ_G0029787)	Mbd4 (MGP_SPRETEiJ_G0029788)	Ift122 (MGP_SPRETEiJ_G0029789)	Rho (MGP_SPRETEiJ_G0029790)	H1f8 (MGP_SPRETEiJ_G0029791)	Plxnd1 (MGP_SPRETEiJ_G0029792)	MGP_SPRETEiJ_G0029793	Washc2 (MGP_SPRETEiJ_G0029794)
Steppe mouse	MODERN SPECIES	3022									Atg7 (ENSMSIG00000031927) #17	ENSMSIG00000031929	ENSMSIG00000031930 #19	ENSMSIG00000031931	Syn2 (ENSMSIG00000031932) #20	ENSMSIG00000031933	Timp4 (ENSMSIG00000031934) #21	Pparg (ENSMSIG00000031935) #22	Tsen2 (ENSMSIG00000031936) #25	Mkrn2os (ENSMSIG00000031937) #26	ENSMSIG00000031938 #27	Raf1 (ENSMSIG00000000188) #28	Tmem40 (ENSMSIG00000000359) #29	Cand2 (ENSMSIG00000000651) #30	Rpl32 (ENSMSIG00000000692)	Efcab12 (ENSMSIG00000000741)	Mbd4 (ENSMSIG00000000793)	Ift122 (ENSMSIG00000000881)	Rho (ENSMSIG00000001309)	ENSMSIG00000001359	H1f8 (ENSMSIG00000001367)	ENSMSIG00000001422	Tmcc1 (ENSMSIG00000001659)
Ryukyu mouse	MODERN SPECIES	15	Vhl (MGP_CAROLIEiJ_G0028736)	Irak2 (MGP_CAROLIEiJ_G0028737)	Tatdn2 (MGP_CAROLIEiJ_G0028738)	Ghrl (MGP_CAROLIEiJ_G0028739) #8	Sec13 (MGP_CAROLIEiJ_G0028740) #9	Atp2b2 (MGP_CAROLIEiJ_G0028741) #10	Slc6a11 (MGP_CAROLIEiJ_G0028742) #11	Slc6a1 (MGP_CAROLIEiJ_G0028743) #12	Hrh1 (MGP_CAROLIEiJ_G0028744) #16	Atg7 (MGP_CAROLIEiJ_G0028745) #17	Vgll4 (MGP_CAROLIEiJ_G0028746) #19	Tamm41 (MGP_CAROLIEiJ_G0028747)	Syn2 (MGP_CAROLIEiJ_G0028748) #20	MGP_CAROLIEiJ_G0028749	Timp4 (MGP_CAROLIEiJ_G0028750) #21	Pparg (MGP_CAROLIEiJ_G0028751) #22	Tsen2 (MGP_CAROLIEiJ_G0028752) #25	Mkrn2os (MGP_CAROLIEiJ_G0028753) #26	Mkrn2 (MGP_CAROLIEiJ_G0028754) #27	Raf1 (MGP_CAROLIEiJ_G0028755) #28	MGP_CAROLIEiJ_G0028756 #29	Cand2 (MGP_CAROLIEiJ_G0028757) #30	MGP_CAROLIEiJ_G0028758	Efcab12 (MGP_CAROLIEiJ_G0028759)	Mbd4 (MGP_CAROLIEiJ_G0028760)	Ift122 (MGP_CAROLIEiJ_G0028761)	Rho (MGP_CAROLIEiJ_G0028762)	H1f8 (MGP_CAROLIEiJ_G0028763)	Plxnd1 (MGP_CAROLIEiJ_G0028764)	Tmcc1 (MGP_CAROLIEiJ_G0028765)	Washc2 (MGP_CAROLIEiJ_G0028766)
Shrew mouse	MODERN SPECIES	11	Vhl (MGP_PahariEiJ_G0022487)	Irak2 (MGP_PahariEiJ_G0022488)	Tatdn2 (MGP_PahariEiJ_G0022489)	Ghrl (MGP_PahariEiJ_G0022490) #8	Sec13 (MGP_PahariEiJ_G0022491) #9	Atp2b2 (MGP_PahariEiJ_G0022492) #10	Slc6a11 (MGP_PahariEiJ_G0022493) #11	Slc6a1 (MGP_PahariEiJ_G0022494) #12	Hrh1 (MGP_PahariEiJ_G0022495) #16	Atg7 (MGP_PahariEiJ_G0022496) #17	Vgll4 (MGP_PahariEiJ_G0022497) #19	Tamm41 (MGP_PahariEiJ_G0022498)	Syn2 (MGP_PahariEiJ_G0022499) #20	MGP_PahariEiJ_G0022500	Timp4 (MGP_PahariEiJ_G0022501) #21	Pparg (MGP_PahariEiJ_G0022502) #22	Tsen2 (MGP_PahariEiJ_G0022503) #25	Mkrn2os (MGP_PahariEiJ_G0022504) #26	Mkrn2 (MGP_PahariEiJ_G0022505) #27	Raf1 (MGP_PahariEiJ_G0022506) #28	Tmem40 (MGP_PahariEiJ_G0022507) #29	Cand2 (MGP_PahariEiJ_G0022508) #30	MGP_PahariEiJ_G0022509	Efcab12 (MGP_PahariEiJ_G0022510)	MGP_PahariEiJ_G0022511	Ift122 (MGP_PahariEiJ_G0022512)	Rho (MGP_PahariEiJ_G0022513)	H1f8 (MGP_PahariEiJ_G0022514)	Plxnd1 (MGP_PahariEiJ_G0022515)	Tmcc1 (MGP_PahariEiJ_G0022516)	Washc2 (MGP_PahariEiJ_G0022517)
Rat	MODERN SPECIES	14	Sec13 (ENSRNOG00000010628) #9	Atp2b2 (ENSRNOG00000030269) #10	Slc6a11 (ENSRNOG00000005697) #11	Slc6a1 (ENSRNOG00000006527) #12	Hrh1 (ENSRNOG00000007420) #16	LOC120102367 (ENSRNOG00000067090)	ENSRNOG00000069624	Atg7 (ENSRNOG00000007486) #17	Vgll4 (ENSRNOG00000007822) #19	Tamm41 (ENSRNOG00000007874)	Syn2 (ENSRNOG00000008157) #20	ENSRNOG00000067395	AC128901.1 (ENSRNOG00000028826)	ENSRNOG00000069227	Timp4 (ENSRNOG00000007955) #21	Pparg (ENSRNOG00000008839) #22	Tsen2 (ENSRNOG00000060175) #25	Mkrn2os (ENSRNOG00000070957) #26	Mkrn2 (ENSRNOG00000009176) #27	Raf1 (ENSRNOG00000010153) #28	Tmem40 (ENSRNOG00000010430) #29	Cand2 (ENSRNOG00000010473) #30	Rpl32 (ENSRNOG00000010746)	Efcab12 (ENSRNOG00000026176)	Mbd4 (ENSRNOG00000010919)	Ift122 (ENSRNOG00000010952)	Rho (ENSRNOG00000011144)	H1f8 (ENSRNOG00000025251)	Plxnd1 (ENSRNOG00000025209)	AABR07061825.2 (ENSRNOG00000059964)	Tmcc1 (ENSRNOG00000011614)
Cricetidae	ANCESTRAL SPECIES	3	ENSGT00390000011082	ENSGT00390000014353	ENSGT00940000159835	ENSGT00940000155616.c.a	ENSGT00390000004064 #8	ENSGT00940000153393.B #9	ENSGT00940000161461 #10	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00390000017530 #29	ENSGT00390000017740.a.b #30	ENSGT00940000153973.c.a.a	ENSGT00940000153973.d	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189
Cricetinae	ANCESTRAL SPECIES	8	ENSGT00390000011082	ENSGT00390000014353	ENSGT00940000159835	ENSGT00940000155616.c.a	ENSGT00390000004064 #8	ENSGT00940000153393.B #9	ENSGT00940000161461 #10	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00390000017530 #29	ENSGT00390000017740.a.b #30	ENSGT00940000153973.d	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00940000153997.b.a.a
Chinese hamster chok1gshd	MODERN SPECIES	144	Brk1 (ENSCGRG00001000410)	Vhl (ENSCGRG00001007732)	Irak2 (ENSCGRG00001011625)	ENSCGRG00001017251	Ghrl (ENSCGRG00001018358) #8	Sec13 (ENSCGRG00001019327) #9	Atp2b2 (ENSCGRG00001021784) #10	Slc6a11 (ENSCGRG00001000475) #11	Slc6a1 (ENSCGRG00001006244) #12	Hrh1 (ENSCGRG00001015773) #16	Atg7 (ENSCGRG00001017070) #17	Vgll4 (ENSCGRG00001001705) #19	Tamm41 (ENSCGRG00001003506)	Syn2 (ENSCGRG00001007902) #20	Timp4 (ENSCGRG00001010158) #21	Pparg (ENSCGRG00001013849) #22	Tsen2 (ENSCGRG00001017681) #25	Mkrn2os (ENSCGRG00001018483) #26	ENSCGRG00001019373 #27	Raf1 (ENSCGRG00001020096) #28	Tmem40 (ENSCGRG00001022432) #29	Cand2 (ENSCGRG00001024197) #30	ENSCGRG00001000039	Efcab12 (ENSCGRG00001000767)	Mbd4 (ENSCGRG00001003507)	Ift122 (ENSCGRG00001012761)	Rho (ENSCGRG00001018161)	H1f8 (ENSCGRG00001024504)	Plxnd1 (ENSCGRG00001007901)	Tmcc1 (ENSCGRG00001016263)	Washc2 (ENSCGRG00001019572)
Golden Hamster	MODERN SPECIES	622	ENSMAUG00000020168	ENSMAUG00000020829	Tatdn2 (ENSMAUG00000008081)	Ghrl (ENSMAUG00000021031) #8	Sec13 (ENSMAUG00000012999) #9	Atp2b2 (ENSMAUG00000009448) #10	Slc6a11 (ENSMAUG00000008311) #11	Slc6a1 (ENSMAUG00000021551) #12	Hrh1 (ENSMAUG00000009874) #16	Atg7 (ENSMAUG00000003276) #17	Vgll4 (ENSMAUG00000011159) #19	Tamm41 (ENSMAUG00000017519)	ENSMAUG00000013097	Timp4 (ENSMAUG00000018049) #21	ENSMAUG00000020153 #20	ENSMAUG00000012323 #22	ENSMAUG00000013859 #25	Mkrn2os (ENSMAUG00000010492) #26	Mkrn2 (ENSMAUG00000014200) #27	Raf1 (ENSMAUG00000015447) #28	Tmem40 (ENSMAUG00000015454) #29	Cand2 (ENSMAUG00000005693) #30	ENSMAUG00000020260	Efcab12 (ENSMAUG00000010638)	ENSMAUG00000014245	Ift122 (ENSMAUG00000005778)	Rho (ENSMAUG00000002081)	H1f8 (ENSMAUG00000011359)	Plxnd1 (ENSMAUG00000021112)	ENSMAUG00000021669	Washc2 (ENSMAUG00000020725)
Cricetidae_B	ANCESTRAL SPECIES	14	ENSGT00390000011082	ENSGT00390000014353	ENSGT00940000159835	ENSGT00940000155616.c.a	ENSGT00390000004064 #8	ENSGT00940000153393.B #9	ENSGT00940000161461 #10	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00390000017530 #29	ENSGT00390000017740.a.b #30	ENSGT00940000153973.c.a.a	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00940000153997.b.a.a
Prairie vole	MODERN SPECIES	84	Irak2 (ENSMOCG00000002120)	Tatdn2 (ENSMOCG00000015418)	Ghrl (ENSMOCG00000014220) #8	Sec13 (ENSMOCG00000020249) #9	Atp2b2 (ENSMOCG00000022399) #10	Slc6a11 (ENSMOCG00000010284) #11	Slc6a1 (ENSMOCG00000011689) #12	Hrh1 (ENSMOCG00000009133) #16	ENSMOCG00000016658	Atg7 (ENSMOCG00000009400) #17	Vgll4 (ENSMOCG00000012297) #19	Tamm41 (ENSMOCG00000020960)	Syn2 (ENSMOCG00000000368) #20	Timp4 (ENSMOCG00000013297) #21	ENSMOCG00000013854	Pparg (ENSMOCG00000017202) #22	Tsen2 (ENSMOCG00000020824) #25	Mkrn2os (ENSMOCG00000010265) #26	Mkrn2 (ENSMOCG00000015472) #27	Raf1 (ENSMOCG00000012403) #28	Tmem40 (ENSMOCG00000021932) #29	Cand2 (ENSMOCG00000012580) #30	ENSMOCG00000015206	Efcab12 (ENSMOCG00000020496)	ENSMOCG00000019929	ENSMOCG00000002466	Ift122 (ENSMOCG00000014549)	Rho (ENSMOCG00000022070)	H1f8 (ENSMOCG00000005594)	Plxnd1 (ENSMOCG00000014026)	Tmcc1 (ENSMOCG00000009713)
Northern American deer mouse	MODERN SPECIES	16	Brk1 (ENSPEMG00000027939)	Vhl (ENSPEMG00000014902)	Irak2 (ENSPEMG00000012267)	Tatdn2 (ENSPEMG00000000467)	Ghrl (ENSPEMG00000001433) #8	Sec13 (ENSPEMG00000009433) #9	Atp2b2 (ENSPEMG00000000259) #10	Slc6a11 (ENSPEMG00000020194) #11	Slc6a1 (ENSPEMG00000011702) #12	Hrh1 (ENSPEMG00000028414) #16	Atg7 (ENSPEMG00000010473) #17	Vgll4 (ENSPEMG00000026845) #19	Tamm41 (ENSPEMG00000017033)	Syn2 (ENSPEMG00000016120) #20	Timp4 (ENSPEMG00000026166) #21	Pparg (ENSPEMG00000013545) #22	Tsen2 (ENSPEMG00000013175) #25	Mkrn2os (ENSPEMG00000012076) #26	Mkrn2 (ENSPEMG00000002776) #27	Raf1 (ENSPEMG00000012728) #28	Tmem40 (ENSPEMG00000002944) #29	ENSPEMG00000029699 ##30	ENSPEMG00000012965	Efcab12 (ENSPEMG00000012553)	Mbd4 (ENSPEMG00000006226)	Ift122 (ENSPEMG00000017389)	Rho (ENSPEMG00000008463)	H1f8 (ENSPEMG00000011381)	Plxnd1 (ENSPEMG00000008271)	ENSPEMG00000024601	Tmcc1 (ENSPEMG00000000449)
Laurasiatheria	ANCESTRAL SPECIES	2	ENSGT00390000014353	ENSGT00940000159835	ENSGT00940000155616.c.a	ENSGT00390000004064 #8	ENSGT00940000153393.B #9	ENSGT00910000147252	ENSGT00940000161461 #10	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT01030000235208	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00390000017530 #29	ENSGT00390000017740.a.b #30	ENSGT00940000153973.c.a.b.b	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000175447	ENSGT00930000152979	ENSGT00940000160900
Laurasiatheria_a	ANCESTRAL SPECIES	3	ENSGT00390000014353	ENSGT00940000159835	ENSGT00940000155616.c.a	ENSGT00390000004064 #8	ENSGT00940000153393.B #9	ENSGT00910000147252	ENSGT00940000161461 #10	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT01030000235208	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00390000017530 #29	ENSGT00390000017740.a.b #30	ENSGT00940000153973.c.a.b.b	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT00930000152979	ENSGT00940000175447
Laurasiatheria_b	ANCESTRAL SPECIES	2	ENSGT00390000011082	ENSGT00390000014353	ENSGT00940000159835	ENSGT00940000155616.c.a	ENSGT00390000004064 #8	ENSGT00940000153393.B #9	ENSGT00940000161461 #10	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT01030000235208	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00950000186178	ENSGT00390000017530 #29	ENSGT00390000017740.a.b #30	ENSGT00940000153973.c.a.b.b.d	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a
Carnivora	ANCESTRAL SPECIES	6	ENSGT00390000014353	ENSGT00940000159835	ENSGT00940000155616.c.a	ENSGT00390000004064 #8	ENSGT00940000153393.B #9	ENSGT00940000161461 #10	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000009113.a.a.q.a.a	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT01030000235208	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00950000186178	ENSGT00390000017530 #29	ENSGT00390000017740.a.b #30	ENSGT00940000153973.c.a.b.a.b	ENSGT00940000153973.c.a.b.b.d	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900
Caniformia	ANCESTRAL SPECIES	4	ENSGT00390000014353	ENSGT00940000159835	ENSGT00940000155616.c.a	ENSGT00390000004064 #8	ENSGT00940000153393.B #9	ENSGT00940000161461 #10	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000009113.a.a.q.a.a	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT01030000235208	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00950000186178	ENSGT00390000017530 #29	ENSGT00390000017740.a.b #30	ENSGT00940000153973.c.a.a	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a
Caniformia_b	ANCESTRAL SPECIES	16	ENSGT00390000014353	ENSGT00940000159835	ENSGT00940000155616.c.a	ENSGT00390000004064 #8	ENSGT00940000153393.B #9	ENSGT00940000161461 #10	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000009113.a.a.q.a.a	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00950000186178	ENSGT00390000017530 #29	ENSGT00390000017740.a.b #30	ENSGT00940000153973.c.a.a	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189
Ursidae	ANCESTRAL SPECIES	11	ENSGT00390000011082	ENSGT00940000159835	ENSGT00940000155616.c.a	ENSGT00390000004064 #8	ENSGT00940000153393.B #9	ENSGT00940000161461 #10	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000009113.a.a.q.a.a	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00950000186178	ENSGT00390000017530 #29	ENSGT00390000017740.a.b #30	ENSGT00940000153973.c.a.b.b.d	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b.d	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189
Ursus	ANCESTRAL SPECIES	43	ENSGT00390000011082	ENSGT00940000159835	ENSGT00940000155616.c.a	ENSGT00390000004064 #8	ENSGT00940000153393.B #9	ENSGT00940000161461 #10	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000009113.a.a.q.a.a	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00390000017530 #29	ENSGT00390000017740.a.b #30	ENSGT00940000153973.c.a.b.b.c.a	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000012138.a.a.j.s.b	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b.d	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189
American black bear	MODERN SPECIES	2198																PPARG (ENSUAMG00000002110) #22	ENSUAMG00000002121 #25
Polar bear	MODERN SPECIES	210	FANCD2OS (ENSUMAG00000018653)	ENSUMAG00000018651	IRAK2 (ENSUMAG00000018643)	TATDN2 (ENSUMAG00000018632)	GHRL (ENSUMAG00000018619) #8	SEC13 (ENSUMAG00000018614) #9	ATP2B2 (ENSUMAG00000018280) #10	SLC6A11 (ENSUMAG00000018214) #11	SLC6A1 (ENSUMAG00000017999) #12	HRH1 (ENSUMAG00000017957) #16	ATG7 (ENSUMAG00000017892) #17	VGLL4 (ENSUMAG00000017868) #19	TAMM41 (ENSUMAG00000017859)	TIMP4 (ENSUMAG00000017853) #21	SYN2 (ENSUMAG00000017656) #20	PPARG (ENSUMAG00000017617) #22	TSEN2 (ENSUMAG00000017610) #25	MKRN2OS (ENSUMAG00000017608) #26	MKRN2 (ENSUMAG00000017606) #27	RAF1 (ENSUMAG00000017600) #28	TMEM40 (ENSUMAG00000017596) #29	CAND2 (ENSUMAG00000017566) #30	RPL32 (ENSUMAG00000017557)	EFCAB12 (ENSUMAG00000017549)	ENSUMAG00000017544	MBD4 (ENSUMAG00000017542)	IFT122 (ENSUMAG00000017522)	RHO (ENSUMAG00000017511)	PLXND1 (ENSUMAG00000017372)	TMCC1 (ENSUMAG00000017322)	TRH (ENSUMAG00000017316)
Giant Panda	MODERN SPECIES	14	BRK1 (ENSAMEG00000016048)	ENSAMEG00000016038	IRAK2 (ENSAMEG00000016020)	TATDN2 (ENSAMEG00000016012)	GHRL (ENSAMEG00000016009) #8	SEC13 (ENSAMEG00000015994) #9	ATP2B2 (ENSAMEG00000015866) #10	SLC6A11 (ENSAMEG00000013958) #11	SLC6A1 (ENSAMEG00000028234) #12	HRH1 (ENSAMEG00000019211) #16	ATG7 (ENSAMEG00000013130) #17	VGLL4 (ENSAMEG00000011011) #19	TAMM41 (ENSAMEG00000010999)	SYN2 (ENSAMEG00000004794) #20	TIMP4 (ENSAMEG00000004836) #21	PPARG (ENSAMEG00000004774) #22	TSEN2 (ENSAMEG00000004748) #25	MKRN2OS (ENSAMEG00000004745) #26	MKRN2 (ENSAMEG00000004720) #27	RAF1 (ENSAMEG00000004650) #28	ENSAMEG00000025362	TMEM40 (ENSAMEG00000004646) #29	CAND2 (ENSAMEG00000004596) #30	RPL32 (ENSAMEG00000004583)	ENSAMEG00000004574	MBD4 (ENSAMEG00000004562)	ENSAMEG00000030948	IFT122 (ENSAMEG00000004471)	RHO (ENSAMEG00000004453)	H1-8 (ENSAMEG00000004448)	PLXND1 (ENSAMEG00000004387)
Mustelinae	ANCESTRAL SPECIES	18	ENSGT00390000011082	ENSGT00390000014353	ENSGT00940000159835	ENSGT00940000155616.c.a	ENSGT00390000004064 #8	ENSGT00940000153393.B #9	ENSGT00940000161461 #10	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00950000186178	ENSGT00390000017530 #29	ENSGT00390000017740.a.b #30	ENSGT00940000153973.c.a.a	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189
American mink	MODERN SPECIES	287													SYN2 (ENSNVIG00000008362) #20	ENSNVIG00000008402	TIMP4 (ENSNVIG00000008416) #21	PPARG (ENSNVIG00000008444) #22	TSEN2 (ENSNVIG00000008550) #25	MKRN2OS (ENSNVIG00000008607) #26	MKRN2 (ENSNVIG00000008629) #27	RAF1 (ENSNVIG00000008700) #28	ENSNVIG00000008812	TMEM40 (ENSNVIG00000008852) #29	CAND2 (ENSNVIG00000008985) #30	ENSNVIG00000009040	EFCAB12 (ENSNVIG00000009088)	MBD4 (ENSNVIG00000009126)	IFT122 (ENSNVIG00000009217)	RHO (ENSNVIG00000009693)	H1-8 (ENSNVIG00000009706)	PLXND1 (ENSNVIG00000009720)	TMCC1 (ENSNVIG00000009775)
Ferret	MODERN SPECIES	163	FANCD2OS (ENSMPUG00000020114)	ENSMPUG00000017155	IRAK2 (ENSMPUG00000017157)	TATDN2 (ENSMPUG00000017160)	SEC13 (ENSMPUG00000017161) #9	ATP2B2 (ENSMPUG00000017163) #10	ENSMPUG00000017167	SLC6A11 (ENSMPUG00000017168) #11	SLC6A1 (ENSMPUG00000017170) #12	HRH1 (ENSMPUG00000020115) #16	ATG7 (ENSMPUG00000017171) #17	VGLL4 (ENSMPUG00000017174) #19	TAMM41 (ENSMPUG00000017175)	SYN2 (ENSMPUG00000017176) #20	TIMP4 (ENSMPUG00000017178) #21	PPARG (ENSMPUG00000017181) #22	TSEN2 (ENSMPUG00000017182) #25	MKRN2OS (ENSMPUG00000017183) #26	MKRN2 (ENSMPUG00000017184) #27	RAF1 (ENSMPUG00000017185) #28	TMEM40 (ENSMPUG00000017187) #29	CAND2 (ENSMPUG00000017188) #30	ENSMPUG00000017189	EFCAB12 (ENSMPUG00000017190)	MBD4 (ENSMPUG00000017195)	IFT122 (ENSMPUG00000017197)	RHO (ENSMPUG00000017225)	ENSMPUG00000017237	PLXND1 (ENSMPUG00000017238)	ENSMPUG00000017241	TMCC1 (ENSMPUG00000017243)
Canidae	ANCESTRAL SPECIES		ENSGT00390000011082	ENSGT00940000159835	ENSGT00940000155616.c.a	ENSGT00390000004064 #8	ENSGT00940000153393.B #9	ENSGT00940000161461 #10	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00940000162517.e.b.b	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT01030000235208	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00390000017530 #29	ENSGT00390000017740.a.b #30	ENSGT00940000153973.c.a.b.a.b	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189
Canis_lupus	ANCESTRAL SPECIES	1	ENSGT00390000011082	ENSGT00940000159835	ENSGT00940000155616.c.a	ENSGT00390000004064 #8	ENSGT00940000153393.B #9	ENSGT00940000161461 #10	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00940000162517.e.b.b	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00390000017530 #29	ENSGT00390000017740.a.b #30	ENSGT00940000153973.c.a.b.a.b	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00950000183087.A.a.a.b.p.a.a
Dog	MODERN SPECIES	12	VHL (ENSCAFG00845008162)	IRAK2 (ENSCAFG00845008041)	TATDN2 (ENSCAFG00845007966)	GHRL (ENSCAFG00845007901) #8	SEC13 (ENSCAFG00845007748) #9	ATP2B2 (ENSCAFG00845007221) #10	SLC6A11 (ENSCAFG00845006781) #11	SLC6A1 (ENSCAFG00845006668) #12	HRH1 (ENSCAFG00845006605) #16	ATG7 (ENSCAFG00845006288) #17	VGLL4 (ENSCAFG00845006044) #19	ENSCAFG00845005976	TAMM41 (ENSCAFG00845005937)	TIMP4 (ENSCAFG00845029189) #21	SYN2 (ENSCAFG00845029109) #20	PPARG (ENSCAFG00845029007) #22	TSEN2 (ENSCAFG00845028923) #25	MKRN2OS (ENSCAFG00845028857) #26	ENSCAFG00845028837	MKRN2 (ENSCAFG00845028765) #27	ENSCAFG00845028720	RAF1 (ENSCAFG00845028676) #28	TMEM40 (ENSCAFG00845028589) #29	CAND2 (ENSCAFG00845028524) #30	RPL32 (ENSCAFG00845028446)	ENSCAFG00845028379	MBD4 (ENSCAFG00845028304)	IFT122 (ENSCAFG00845027707)	RHO (ENSCAFG00845027581)	H1-8 (ENSCAFG00845027541)	PLXND1 (ENSCAFG00845026992)
Dingo	MODERN SPECIES	236	ENSCAFG00020008385	IRAK2 (ENSCAFG00020008374)	TATDN2 (ENSCAFG00020008366)	GHRL (ENSCAFG00020008352) #8	SEC13 (ENSCAFG00020008342) #9	ATP2B2 (ENSCAFG00020007890) #10	SLC6A11 (ENSCAFG00020007842) #11	SLC6A1 (ENSCAFG00020007634) #12	HRH1 (ENSCAFG00020007622) #16	ATG7 (ENSCAFG00020007592) #17	VGLL4 (ENSCAFG00020007573) #19	ENSCAFG00020007566	TAMM41 (ENSCAFG00020007562)	TIMP4 (ENSCAFG00020007541) #21	SYN2 (ENSCAFG00020007281) #20	PPARG (ENSCAFG00020007261) #22	TSEN2 (ENSCAFG00020007250) #25	MKRN2OS (ENSCAFG00020007247) #26	ENSCAFG00020007244	MKRN2 (ENSCAFG00020007243) #27	RAF1 (ENSCAFG00020007230) #28	TMEM40 (ENSCAFG00020007225) #29	CAND2 (ENSCAFG00020007135) #30	RPL32 (ENSCAFG00020007109)	EFCAB12 (ENSCAFG00020007096)	MBD4 (ENSCAFG00020007082)	IFT122 (ENSCAFG00020006537)	RHO (ENSCAFG00020006492)	H1-8 (ENSCAFG00020006486)	PLXND1 (ENSCAFG00020006389)	ENSCAFG00020006372
Red fox	MODERN SPECIES	130	TATDN2 (ENSVVUG00000023406)	GHRL (ENSVVUG00000023394) #8	SEC13 (ENSVVUG00000023379) #9	ATP2B2 (ENSVVUG00000017082) #10	SLC6A11 (ENSVVUG00000015910) #11	SLC6A1 (ENSVVUG00000015829) #12	HRH1 (ENSVVUG00000015819) #16	ATG7 (ENSVVUG00000015693) #17	VGLL4 (ENSVVUG00000015675) #19	ENSVVUG00000015670	TAMM41 (ENSVVUG00000015667)	ENSVVUG00000015666	TIMP4 (ENSVVUG00000015655) #21	SYN2 (ENSVVUG00000015294) #20	ENSVVUG00000015270	PPARG (ENSVVUG00000015266) #22	TSEN2 (ENSVVUG00000015253) #25	ENSVVUG00000015251 #26	ENSVVUG00000015247	ENSVVUG00000015244	ENSVVUG00000015242	MKRN2 (ENSVVUG00000015240) #27	RAF1 (ENSVVUG00000015233) #28	ENSVVUG00000015228	CAND2 (ENSVVUG00000014272) #30	RPL32 (ENSVVUG00000014231)	EFCAB12 (ENSVVUG00000014226)	MBD4 (ENSVVUG00000014222)	IFT122 (ENSVVUG00000014184)	RHO (ENSVVUG00000014149)	H1-8 (ENSVVUG00000014145)
Felidae	ANCESTRAL SPECIES	17	ENSGT00390000014353	ENSGT00940000159835	ENSGT00940000155616.c.a	ENSGT00390000004064 #8	ENSGT00940000153393.B #9	ENSGT00940000161461 #10	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000009113.a.a.q.a.a	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00390000017530 #29	ENSGT00390000017740.a.b #30	ENSGT00940000153973.c.a.b.b.d	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951
Panthera	ANCESTRAL SPECIES	1	ENSGT00390000014353	ENSGT00940000159835	ENSGT00940000155616.c.a	ENSGT00390000004064 #8	ENSGT00940000153393.B #9	ENSGT00940000161461 #10	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000009113.a.a.q.a.a	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00390000017530 #29	ENSGT00390000017740.a.b #30	ENSGT00940000153973.c.a.b.b.d	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951
Panthera_a	ANCESTRAL SPECIES		ENSGT00390000014353	ENSGT00940000159835	ENSGT00940000155616.c.a	ENSGT00390000004064 #8	ENSGT00940000153393.B #9	ENSGT00940000161461 #10	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000009113.a.a.q.a.a	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00390000017530 #29	ENSGT00390000017740.a.b #30	ENSGT00940000153973.c.a.b.b.d	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951
leopard	MODERN SPECIES	114	ENSPPRG00000007104	ENSPPRG00000007193	IRAK2 (ENSPPRG00000007279)	TATDN2 (ENSPPRG00000007462)	GHRL (ENSPPRG00000007785) #8	ENSPPRG00000008346 #9	ATP2B2 (ENSPPRG00000012017) #10	SLC6A11 (ENSPPRG00000014098) #11	SLC6A1 (ENSPPRG00000014472) #12	HRH1 (ENSPPRG00000018233) #16	ATG7 (ENSPPRG00000020749) #17	VGLL4 (ENSPPRG00000022454) #19	TAMM41 (ENSPPRG00000001031)	TIMP4 (ENSPPRG00000001115) #21	SYN2 (ENSPPRG00000001384) #20	PPARG (ENSPPRG00000001758) #22	ENSPPRG00000001808 #25
lion	MODERN SPECIES	2	ENSPLOG00000000086	IRAK2 (ENSPLOG00000000093)	TATDN2 (ENSPLOG00000000120)	GHRL (ENSPLOG00000000147) #8	SEC13 (ENSPLOG00000000172) #9	ATP2B2 (ENSPLOG00000000482) #10	SLC6A11 (ENSPLOG00000000895) #11	SLC6A1 (ENSPLOG00000001048) #12	HRH1 (ENSPLOG00000001150) #16	ATG7 (ENSPLOG00000001203) #17	ENSPLOG00000001305	VGLL4 (ENSPLOG00000001346) #19	TAMM41 (ENSPLOG00000001396)	SYN2 (ENSPLOG00000001422) #20	TIMP4 (ENSPLOG00000001454) #21	PPARG (ENSPLOG00000001496) #22	TSEN2 (ENSPLOG00000001594) #25	MKRN2OS (ENSPLOG00000001659) #26	MKRN2 (ENSPLOG00000001691) #27	RAF1 (ENSPLOG00000001743) #28	TMEM40 (ENSPLOG00000001779) #29	CAND2 (ENSPLOG00000001847) #30	RPL32 (ENSPLOG00000001870)	EFCAB12 (ENSPLOG00000001903)	MBD4 (ENSPLOG00000002021)	IFT122 (ENSPLOG00000002159)	RHO (ENSPLOG00000002405)	H1-8 (ENSPLOG00000002423)	PLXND1 (ENSPLOG00000002460)	TMCC1 (ENSPLOG00000002518)	TRH (ENSPLOG00000002548)
Tiger	MODERN SPECIES	57	ENSPTIG00000006020	ENSPTIG00000005759	IRAK2 (ENSPTIG00000002325)	TATDN2 (ENSPTIG00000021381)	GHRL (ENSPTIG00000020903) #8	SEC13 (ENSPTIG00000019088) #9	ATP2B2 (ENSPTIG00000016845) #10	SLC6A11 (ENSPTIG00000016056) #11	SLC6A1 (ENSPTIG00000015454) #12	HRH1 (ENSPTIG00000005327) #16	ATG7 (ENSPTIG00000012782) #17	VGLL4 (ENSPTIG00000011766) #19	TAMM41 (ENSPTIG00000009439)	TIMP4 (ENSPTIG00000009274) #21	SYN2 (ENSPTIG00000005386) #20	PPARG (ENSPTIG00000021339) #22	TSEN2 (ENSPTIG00000021018) #25	MKRN2OS (ENSPTIG00000020689) #26	MKRN2 (ENSPTIG00000020261) #27	RAF1 (ENSPTIG00000019431) #28	TMEM40 (ENSPTIG00000016867) #29	CAND2 (ENSPTIG00000014551) #30	RPL32 (ENSPTIG00000013290)	EFCAB12 (ENSPTIG00000012496)	ENSPTIG00000012068	IFT122 (ENSPTIG00000017825)	RHO (ENSPTIG00000016846)	H1-8 (ENSPTIG00000016687)	ENSPTIG00000016640	ENSPTIG00000016501
Cat	MODERN SPECIES	1	BRK1 (ENSFCAG00000011232)	ENSFCAG00000041497	IRAK2 (ENSFCAG00000011239)	TATDN2 (ENSFCAG00000011241)	GHRL (ENSFCAG00000011244) #8	SEC13 (ENSFCAG00000011245) #9	ATP2B2 (ENSFCAG00000011247) #10	SLC6A11 (ENSFCAG00000006043) #11	SLC6A1 (ENSFCAG00000004345) #12	HRH1 (ENSFCAG00000034897) #16	ATG7 (ENSFCAG00000003263) #17	VGLL4 (ENSFCAG00000003266) #19	TAMM41 (ENSFCAG00000030835)	SYN2 (ENSFCAG00000006229) #20	TIMP4 (ENSFCAG00000028966) #21	PPARG (ENSFCAG00000006231) #22	TSEN2 (ENSFCAG00000025500) #25	MKRN2OS (ENSFCAG00000046813) #26	ENSFCAG00000049119	MKRN2 (ENSFCAG00000007979) #27	RAF1 (ENSFCAG00000026299) #28	TMEM40 (ENSFCAG00000037003) #29	ENSFCAG00000052196	CAND2 (ENSFCAG00000008340) #30	RPL32 (ENSFCAG00000030450)	EFCAB12 (ENSFCAG00000000081)	MBD4 (ENSFCAG00000000083)	IFT122 (ENSFCAG00000000086)	RHO (ENSFCAG00000000092)	H1-8 (ENSFCAG00000000094)	PLXND1 (ENSFCAG00000000095)
Laurasiatheria_c	ANCESTRAL SPECIES	2	ENSGT00390000011082	ENSGT00390000014353	ENSGT00940000159835	ENSGT00940000155616.c.a	ENSGT00390000004064 #8	ENSGT00940000153393.B #9	ENSGT00940000161461 #10	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00950000186178	ENSGT00390000017530 #29	ENSGT00390000017740.a.b #30	ENSGT00940000153973.d	ENSGT00940000153973.c.a.b.b.d	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a
Chiroptera	ANCESTRAL SPECIES	54	ENSGT00390000011082	ENSGT00390000014353	ENSGT00940000159835	ENSGT00940000155616.c.a	ENSGT00390000004064 #8	ENSGT00940000153393.B #9	ENSGT00940000161461 #10	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00390000017530 #29	ENSGT00390000017740.a.b #30	ENSGT00940000153973.c.a.b.b.d	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951
Microchiroptera	ANCESTRAL SPECIES	16	ENSGT00390000011082	ENSGT00390000014353	ENSGT00940000159835	ENSGT00940000155616.c.a	ENSGT00390000004064 #8	ENSGT00940000153393.B #9	ENSGT00940000161461 #10	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00390000017530 #29	ENSGT00390000017740.a.b #30	ENSGT00940000153973.c.a.b.b.d	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951
Greater horseshoe bat	MODERN SPECIES	8	ENSRFEG00010010913	ENSRFEG00010010885	IRAK2 (ENSRFEG00010010790)	TATDN2 (ENSRFEG00010010704)	ENSRFEG00010010629 #8	ENSRFEG00010010425 #9	ATP2B2 (ENSRFEG00010019414) #10	SLC6A11 (ENSRFEG00010019331) #11	SLC6A1 (ENSRFEG00010019187) #12	HRH1 (ENSRFEG00010019159) #16	ATG7 (ENSRFEG00010019096) #17	VGLL4 (ENSRFEG00010019005) #19	TAMM41 (ENSRFEG00010018912)	TIMP4 (ENSRFEG00010018875) #21	SYN2 (ENSRFEG00010018840) #20	PPARG (ENSRFEG00010018692) #22	TSEN2 (ENSRFEG00010018592) #25	MKRN2OS (ENSRFEG00010018565) #26	MKRN2 (ENSRFEG00010018469) #27	RAF1 (ENSRFEG00010018423) #28	TMEM40 (ENSRFEG00010018278) #29	CAND2 (ENSRFEG00010018212) #30	RPL32 (ENSRFEG00010018162)	EFCAB12 (ENSRFEG00010018070)	MBD4 (ENSRFEG00010018007)	IFT122 (ENSRFEG00010017745)	RHO (ENSRFEG00010017659)	PLXND1 (ENSRFEG00010017592)	TMCC1 (ENSRFEG00010017473)	ENSRFEG00010017442	TRH (ENSRFEG00010017403)
Microbat	MODERN SPECIES	945	ENSMLUG00000006216	ENSMLUG00000004567	IRAK2 (ENSMLUG00000004572)	TATDN2 (ENSMLUG00000004584)	GHRL (ENSMLUG00000012014) #8	SEC13 (ENSMLUG00000004901) #9	ATP2B2 (ENSMLUG00000001467) #10	ENSMLUG00000009590 #11	SLC6A1 (ENSMLUG00000002027) #12	HRH1 (ENSMLUG00000010552) #16	ATG7 (ENSMLUG00000010572) #17	VGLL4 (ENSMLUG00000010597) #19	TAMM41 (ENSMLUG00000015063)	TIMP4 (ENSMLUG00000006263) #21	SYN2 (ENSMLUG00000006253) #20	PPARG (ENSMLUG00000017638) #22	TSEN2 (ENSMLUG00000017641) #25	MKRN2OS (ENSMLUG00000024734) #26	MKRN2 (ENSMLUG00000017643) #27	RAF1 (ENSMLUG00000017645) #28	TMEM40 (ENSMLUG00000002835) #29	CAND2 (ENSMLUG00000006333) #30	RPL32 (ENSMLUG00000022528)	ENSMLUG00000014759	MBD4 (ENSMLUG00000014766)	IFT122 (ENSMLUG00000014771)	RHO (ENSMLUG00000014786)	ENSMLUG00000025226	PLXND1 (ENSMLUG00000014790)	TMCC1 (ENSMLUG00000016755)	TRH (ENSMLUG00000007249)
Megabat	MODERN SPECIES	551																PPARG (ENSPVAG00000009845) #22
Equus	ANCESTRAL SPECIES	5	ENSGT00390000016970	ENSGT00390000000631	ENSGT00940000159835	ENSGT00940000155616.c.a	ENSGT00390000004064 #8	ENSGT00940000153393.B #9	ENSGT00940000161461 #10	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT01030000235208	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084.ab.a.b #28	ENSGT00950000186178	ENSGT00390000017530 #29	ENSGT00390000017740.a.b #30	ENSGT00940000153973.d	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189
Horse	MODERN SPECIES	7	IRAK2 (ENSECAG00000012960)	TATDN2 (ENSECAG00000010589)	GHRL (ENSECAG00000025073) #8	SEC13 (ENSECAG00000020459) #9	ATP2B2 (ENSECAG00000023528) #10	SLC6A11 (ENSECAG00000004220) #11	SLC6A1 (ENSECAG00000000699) #12	HRH1 (ENSECAG00000004544) #16	ENSECAG00000057850	ENSECAG00000048096	ATG7 (ENSECAG00000022756) #17	VGLL4 (ENSECAG00000039947) #19	TAMM41 (ENSECAG00000013860)	TIMP4 (ENSECAG00000011609) #21	SYN2 (ENSECAG00000049642) #20	PPARG (ENSECAG00000016664) #22	ENSECAG00000039510	TSEN2 (ENSECAG00000012813) #25	MKRN2OS (ENSECAG00000012416)	MKRN2 (ENSECAG00000024404) #27	RAF1 (ENSECAG00000011807) #28	ENSECAG00000033555	TMEM40 (ENSECAG00000008940) #29	RPL32 (ENSECAG00000049946)	CAND2 (ENSECAG00000010515) #30	MBD4 (ENSECAG00000022106)	IFT122 (ENSECAG00000015360)	RHO (ENSECAG00000013709)	H1-8 (ENSECAG00000013614)	PLXND1 (ENSECAG00000009159)	TMCC1 (ENSECAG00000006725)
Donkey	MODERN SPECIES	13	IRAK2 (ENSEASG00005014286)	TATDN2 (ENSEASG00005014289)	GHRL (ENSEASG00005014290) #8	SEC13 (ENSEASG00005014291) #9	ATP2B2 (ENSEASG00005014293) #10	ENSEASG00005034257	SLC6A11 (ENSEASG00005014295) #11	SLC6A1 (ENSEASG00005014296) #12	HRH1 (ENSEASG00005025266) #16	ATG7 (ENSEASG00005014298) #17	ENSEASG00005027051	VGLL4 (ENSEASG00005014301) #19	TAMM41 (ENSEASG00005014302)	SYN2 (ENSEASG00005014311) #20	TIMP4 (ENSEASG00005030754) #21	PPARG (ENSEASG00005014732) #22	TSEN2 (ENSEASG00005014763) #25	ENSEASG00005014772	MKRN2OS (ENSEASG00005035083) #26	MKRN2 (ENSEASG00005014776) #27	ENSEASG00005014777 #28	TMEM40 (ENSEASG00005033260) #29	ENSEASG00005025405	CAND2 (ENSEASG00005014788) #30	ENSEASG00005014792	MBD4 (ENSEASG00005014800)	IFT122 (ENSEASG00005014840)	RHO (ENSEASG00005015347)	H1-8 (ENSEASG00005025925)	PLXND1 (ENSEASG00005015351)	TMCC1 (ENSEASG00005015373)
Artiodactyla	ANCESTRAL SPECIES	2	ENSGT00390000014353	ENSGT00940000159835	ENSGT00940000155616.c.a.a	ENSGT00390000004064 #8	ENSGT00940000153393.B #9	ENSGT00910000147252	ENSGT00940000161461 #10	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00390000017530 #29	ENSGT00390000017740.a.b #30	ENSGT00940000153973.d	ENSGT00940000153973.c.a.b.b	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT01010000229800	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT00930000152979
Suina	ANCESTRAL SPECIES	1	ENSGT00390000014353	ENSGT00940000159835	ENSGT00940000155616.c.a.a	ENSGT00390000004064 #8	ENSGT00940000153393.B #9	ENSGT00910000147252	ENSGT00940000161461 #10	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT01030000235208	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00390000017530 #29	ENSGT00390000017740.a.b #30	ENSGT00940000153973.c.a.b.b	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT01010000229800	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a
Chacoan peccary	MODERN SPECIES	950	IRAK2 (ENSCWAG00000021763)	TATDN2 (ENSCWAG00000021773)	GHRL (ENSCWAG00000021782) #8	SEC13 (ENSCWAG00000021789) #9	ENSCWAG00000011861	ATP2B2 (ENSCWAG00000012003) #10	SLC6A11 (ENSCWAG00000015415) #11	SLC6A1 (ENSCWAG00000015592) #12	HRH1 (ENSCWAG00000016580) #16	ATG7 (ENSCWAG00000016602) #17	VGLL4 (ENSCWAG00000016758) #19	ENSCWAG00000016872	TAMM41 (ENSCWAG00000016892)	SYN2 (ENSCWAG00000016935) #20	TIMP4 (ENSCWAG00000017007) #21	PPARG (ENSCWAG00000017057) #22	TSEN2 (ENSCWAG00000017441) #25	ENSCWAG00000017774	MKRN2 (ENSCWAG00000017797) #27	RAF1 (ENSCWAG00000017888) #28	TMEM40 (ENSCWAG00000017953) #29	CAND2 (ENSCWAG00000018031) #30	RPL32 (ENSCWAG00000018094)	EFCAB12 (ENSCWAG00000018153)	ENSCWAG00000018222	ENSCWAG00000018236	ENSCWAG00000018255	IFT122 (ENSCWAG00000018289)	RHO (ENSCWAG00000018568)	H1-8 (ENSCWAG00000018609)	PLXND1 (ENSCWAG00000018660)
Pig	MODERN SPECIES	4	BRK1 (ENSSSCG00000011565)	ENSSSCG00000011567	IRAK2 (ENSSSCG00000011570)	TATDN2 (ENSSSCG00000011569)	GHRL (ENSSSCG00000011568) #8	SEC13 (ENSSSCG00000011572) #9	ATP2B2 (ENSSSCG00000023084) #10	SLC6A11 (ENSSSCG00000039850) #11	SLC6A1 (ENSSSCG00000011577) #12	HRH1 (ENSSSCG00000011576) #16	ATG7 (ENSSSCG00000011575) #17	VGLL4 (ENSSSCG00000030581) #19	TAMM41 (ENSSSCG00000011578)	SYN2 (ENSSSCG00000023225) #20	TIMP4 (ENSSSCG00000033000) #21	PPARG (ENSSSCG00000011579) #22	TSEN2 (ENSSSCG00000011580) #25	MKRN2OS (ENSSSCG00000011581) #26	ENSSSCG00000045850	MKRN2 (ENSSSCG00000029877) #27	RAF1 (ENSSSCG00000024453) #28	ENSSSCG00000056163	TMEM40 (ENSSSCG00000011583) #29	CAND2 (ENSSSCG00000011582) #30	RPL32 (ENSSSCG00000035811)	EFCAB12 (ENSSSCG00000011587)	MBD4 (ENSSSCG00000033303)	IFT122 (ENSSSCG00000011589)	RHO (ENSSSCG00000011590)	H1-8 (ENSSSCG00000011591)	PLXND1 (ENSSSCG00000011592)
Artiodactyla_a	ANCESTRAL SPECIES	18	ENSGT00390000014353	ENSGT00940000159835	ENSGT00940000155616.c.a.a	ENSGT00390000004064 #8	ENSGT00940000153393.B #9	ENSGT00910000147252	ENSGT00940000161461 #10	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00390000017530 #29	ENSGT00390000017740.a.b #30	ENSGT00940000153973.d	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT01010000229800	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT00940000175447	ENSGT00930000152979
Camelidae	ANCESTRAL SPECIES	7	ENSGT00940000170109	ENSGT00390000014353	ENSGT00940000159835	ENSGT00940000155616.c.a.a	ENSGT00390000004064 #8	ENSGT00940000153393.B #9	ENSGT00940000161461 #10	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00390000017530 #29	ENSGT00390000017740.a.b #30	ENSGT00940000153973.c.b	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000175447	ENSGT00930000152979	ENSGT01020000230394.e.b.a	ENSGT00940000155189
Arabian camel	MODERN SPECIES	8	ENSCDRG00005014871	ENSCDRG00005014908	IRAK2 (ENSCDRG00005014940)	TATDN2 (ENSCDRG00005015003)	GHRL (ENSCDRG00005015107) #8	SEC13 (ENSCDRG00005015206) #9	ATP2B2 (ENSCDRG00005015469) #10	SLC6A11 (ENSCDRG00005015983) #11	SLC6A1 (ENSCDRG00005016134) #12	HRH1 (ENSCDRG00005016405) #16	ATG7 (ENSCDRG00005016438) #17	VGLL4 (ENSCDRG00005016647) #19	TAMM41 (ENSCDRG00005016988)	SYN2 (ENSCDRG00005017059) #20	TIMP4 (ENSCDRG00005017087) #21	PPARG (ENSCDRG00005017141) #22	TSEN2 (ENSCDRG00005017293) #25	MKRN2OS (ENSCDRG00005017382) #26	MKRN2 (ENSCDRG00005017406) #27	RAF1 (ENSCDRG00005017576) #28	TMEM40 (ENSCDRG00005017673) #29	CAND2 (ENSCDRG00005017872) #30	ENSCDRG00005018038	EFCAB12 (ENSCDRG00005018119)	MBD4 (ENSCDRG00005018206)	IFT122 (ENSCDRG00005018267)	RHO (ENSCDRG00005018442)	ENSCDRG00005018477	ENSCDRG00005018504	ENSCDRG00005018533	PLXND1 (ENSCDRG00005018551)
Alpaca	MODERN SPECIES	1304														ENSVPAG00000011052 #20	TIMP4 (ENSVPAG00000011058) #21	PPARG (ENSVPAG00000011059) #22	ENSVPAG00000011061 #25	MKRN2 (ENSVPAG00000011064) #27	RAF1 (ENSVPAG00000011066) #28	TMEM40 (ENSVPAG00000011071) #29
Artiodactyla_b	ANCESTRAL SPECIES	21	ENSGT00390000014353	ENSGT00940000159835	ENSGT00940000155616.c.a.a	ENSGT00390000004064 #8	ENSGT00940000153393.B #9	ENSGT00910000147252	ENSGT00940000161461 #10	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00390000017530 #29	ENSGT00390000017740.a.b #30	ENSGT00940000153973.d	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT01010000229800	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT00930000152979	ENSGT00940000175447
Cetacea	ANCESTRAL SPECIES	7	ENSGT00390000011082	ENSGT00390000014353	ENSGT00940000159835	ENSGT00940000155616.c.a.a	ENSGT00390000004064 #8	ENSGT00940000153393.B.`b #9	ENSGT00940000161461 #10	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00390000017530 #29	ENSGT00390000017740.a.b #30	ENSGT00940000153973.c.a.b.b	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT01010000229800	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT00930000152979	ENSGT01020000230394.e.b.a
Blue whale	MODERN SPECIES	2	IRAK2 (ENSBMSG00010008329)	TATDN2 (ENSBMSG00010008348)	ENSBMSG00010008375 #8	SEC13 (ENSBMSG00010008420) #9	ATP2B2 (ENSBMSG00010008618) #10	SLC6A11 (ENSBMSG00010009702) #11	SLC6A1 (ENSBMSG00010009806) #12	ENSBMSG00010009900	HRH1 (ENSBMSG00010009905) #16	ATG7 (ENSBMSG00010009931) #17	ENSBMSG00010009994 #19	ENSBMSG00010010031	TAMM41 (ENSBMSG00010010044)	SYN2 (ENSBMSG00010010076) #20	TIMP4 (ENSBMSG00010010106) #21	PPARG (ENSBMSG00010010135) #22	TSEN2 (ENSBMSG00010010317) #25	MKRN2OS (ENSBMSG00010010343) #26	MKRN2 (ENSBMSG00010010365) #27	RAF1 (ENSBMSG00010010408) #28	TMEM40 (ENSBMSG00010010438) #29	CAND2 (ENSBMSG00010010467) #30	RPL32 (ENSBMSG00010010483)	EFCAB12 (ENSBMSG00010010503)	ENSBMSG00010010533	ENSBMSG00010010542	IFT122 (ENSBMSG00010010593)	RHO (ENSBMSG00010010727)	ENSBMSG00010010803	PLXND1 (ENSBMSG00010010833)	TMCC1 (ENSBMSG00010010919)
Odontoceti	ANCESTRAL SPECIES	5	ENSGT00390000011082	ENSGT00390000014353	ENSGT00940000159835	ENSGT00940000155616.c.a.a	ENSGT00390000004064 #8	ENSGT00940000153393.B.`b #9	ENSGT00940000161461 #10	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00390000017530 #29	ENSGT00390000017740.a.b #30	ENSGT00940000153973.c.a.b.b	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT00930000152979	ENSGT01020000230394.e.b.a	ENSGT00940000155189
Sperm whale	MODERN SPECIES	9	FANCD2OS (ENSPCTG00005007769)	BRK1 (ENSPCTG00005007752)	ENSPCTG00005007736	IRAK2 (ENSPCTG00005007701)	TATDN2 (ENSPCTG00005007678)	GHRL (ENSPCTG00005007648) #8	SEC13 (ENSPCTG00005007576) #9	SLC6A11 (ENSPCTG00005007501) #11	SLC6A1 (ENSPCTG00005006885) #12	HRH1 (ENSPCTG00005006823) #16	ATG7 (ENSPCTG00005006565) #17	VGLL4 (ENSPCTG00005006432) #19	TAMM41 (ENSPCTG00005006384)	TIMP4 (ENSPCTG00005006355) #21	SYN2 (ENSPCTG00005006330) #20	PPARG (ENSPCTG00005006236) #22	MKRN2OS (ENSPCTG00005006199) #26	MKRN2 (ENSPCTG00005006141) #27	RAF1 (ENSPCTG00005006081) #28	ENSPCTG00005006042 #30	ENSPCTG00005006016	EFCAB12 (ENSPCTG00005005960)	MBD4 (ENSPCTG00005005918)	IFT122 (ENSPCTG00005005825)	RHO (ENSPCTG00005005781)	H1-8 (ENSPCTG00005005747)	ENSPCTG00005005647	ENSPCTG00005005684	TRH (ENSPCTG00005005621)	ENSPCTG00005005601	TMCC1 (ENSPCTG00005005558)
Odontoceti_a	ANCESTRAL SPECIES	5	ENSGT00940000170109	ENSGT00390000014353.q	ENSGT00940000159835	ENSGT00940000155616.c.a.a	ENSGT00390000004064 #8	ENSGT00940000153393.B.`b #9	ENSGT00940000161461 #10	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00390000017530 #29	ENSGT00390000017740.a.b #30	ENSGT00940000153973.c.a.b.b	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951
Dolphin	MODERN SPECIES	2550											ATG7 (ENSTTRG00000016560) #17	ENSTTRG00000016561 #19	TAMM41 (ENSTTRG00000016562)	SYN2 (ENSTTRG00000016563) #20	TIMP4 (ENSTTRG00000016564) #21	PPARG (ENSTTRG00000016565) #22	TSEN2 (ENSTTRG00000016566) #25
Odontoceti_b	ANCESTRAL SPECIES	6	ENSGT00940000170109	ENSGT00390000014353.q	ENSGT00940000159835	ENSGT00940000155616.c.a.a	ENSGT00390000004064 #8	ENSGT00940000153393.B.`b #9	ENSGT00940000161461 #10	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00390000017530 #29	ENSGT00390000017740.a.b #30	ENSGT00940000153973.c.a.b.b	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951
Vaquita	MODERN SPECIES	2	ENSPSNG00000016577	ENSPSNG00000016532	IRAK2 (ENSPSNG00000016489)	TATDN2 (ENSPSNG00000016441)	GHRL (ENSPSNG00000016272) #8	ENSPSNG00000015998 #9	ATP2B2 (ENSPSNG00000013827) #10	SLC6A11 (ENSPSNG00000013275) #11	SLC6A1 (ENSPSNG00000012418) #12	HRH1 (ENSPSNG00000012320) #16	ATG7 (ENSPSNG00000011678) #17	VGLL4 (ENSPSNG00000011411) #19	TAMM41 (ENSPSNG00000011313)	TIMP4 (ENSPSNG00000011214) #21	SYN2 (ENSPSNG00000010964) #20	PPARG (ENSPSNG00000010554) #22	TSEN2 (ENSPSNG00000010460) #25	MKRN2OS (ENSPSNG00000010409) #26	MKRN2 (ENSPSNG00000010288) #27	RAF1 (ENSPSNG00000010184) #28	TMEM40 (ENSPSNG00000010002) #29	CAND2 (ENSPSNG00000009832) #30	RPL32 (ENSPSNG00000022724)	EFCAB12 (ENSPSNG00000022723)	MBD4 (ENSPSNG00000022722)	IFT122 (ENSPSNG00000022721)	RHO (ENSPSNG00000022720)	H1-8 (ENSPSNG00000022719)	PLXND1 (ENSPSNG00000022718)	ENSPSNG00000022717	ENSPSNG00000022714
Monodontidae	ANCESTRAL SPECIES	4	ENSGT00940000170109	ENSGT00390000014353.q	ENSGT00940000159835	ENSGT00940000155616.c.a.a	ENSGT00390000004064 #8	ENSGT00940000153393.B.`b #9	ENSGT00940000161461 #10	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00390000017530 #29	ENSGT00390000017740.a.b #30	ENSGT00940000153973.c.a.b.b	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951
Beluga whale	MODERN SPECIES	66	ENSDLEG00000014934	ENSDLEG00000014946	IRAK2 (ENSDLEG00000014959)	ENSDLEG00000014979	ENSDLEG00000014986	GHRL (ENSDLEG00000015002) #8	SEC13 (ENSDLEG00000015045) #9	ATP2B2 (ENSDLEG00000015650) #10	SLC6A11 (ENSDLEG00000021059) #11	SLC6A1 (ENSDLEG00000021420) #12	HRH1 (ENSDLEG00000021424) #16	ATG7 (ENSDLEG00000021427) #17	TAMM41 (ENSDLEG00000021438)	SYN2 (ENSDLEG00000021448) #20	TIMP4 (ENSDLEG00000021450) #21	ENSDLEG00000021458 #22	ENSDLEG00000021477	MKRN2 (ENSDLEG00000021478) #27	RAF1 (ENSDLEG00000007956) #28	TMEM40 (ENSDLEG00000008007) #29	CAND2 (ENSDLEG00000008059) #30	RPL32 (ENSDLEG00000008175)	ENSDLEG00000008201	MBD4 (ENSDLEG00000008239)	IFT122 (ENSDLEG00000008304)	RHO (ENSDLEG00000008470)	H1-8 (ENSDLEG00000008521)	PLXND1 (ENSDLEG00000008614)	TMCC1 (ENSDLEG00000008842)	TRH (ENSDLEG00000008893)	RBSN (ENSDLEG00000008914)
Narwhal	MODERN SPECIES	310	BRK1 (ENSMMNG00015011023)	IRAK2 (ENSMMNG00015011051)	TATDN2 (ENSMMNG00015011101)	GHRL (ENSMMNG00015011143) #8	SEC13 (ENSMMNG00015011196) #9	ATP2B2 (ENSMMNG00015011282) #10	ENSMMNG00015011333	SLC6A11 (ENSMMNG00015011359) #11	SLC6A1 (ENSMMNG00015011419) #12	HRH1 (ENSMMNG00015011469) #16	ATG7 (ENSMMNG00015011505) #17	VGLL4 (ENSMMNG00015011616) #19	TAMM41 (ENSMMNG00015011672)	SYN2 (ENSMMNG00015011708) #20	TIMP4 (ENSMMNG00015011737) #21	PPARG (ENSMMNG00015011771) #22	TSEN2 (ENSMMNG00015011810) #25	MKRN2OS (ENSMMNG00015011881) #26	MKRN2 (ENSMMNG00015011904) #27	RAF1 (ENSMMNG00015011951) #28	TMEM40 (ENSMMNG00015012000) #29	CAND2 (ENSMMNG00015012039) #30	RPL32 (ENSMMNG00015012118)	EFCAB12 (ENSMMNG00015012144)	MBD4 (ENSMMNG00015012156)	IFT122 (ENSMMNG00015012203)	RHO (ENSMMNG00015012293)	H1-8 (ENSMMNG00015012313)	PLXND1 (ENSMMNG00015012370)	TMCC1 (ENSMMNG00015012483)	TRH (ENSMMNG00015012517)
Pecora	ANCESTRAL SPECIES	17	ENSGT00940000155721	ENSGT00390000012690	ENSGT00940000155616.c.a.b	ENSGT00390000004064 #8	ENSGT00940000153393.B #9	ENSGT00910000147252	ENSGT00940000161461 #10	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00390000017530 #29	ENSGT00390000017740.a.b #30	ENSGT00940000153973.d	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951
Yarkand deer	MODERN SPECIES	16	ENSCHYG00000023376	ENSCHYG00000023706	TMEM43 (ENSCHYG00000023737) #37	XPC (ENSCHYG00000023838)	LSM3 (ENSCHYG00000023916)	SLC6A6 (ENSCHYG00000023942)	GRIP2 (ENSCHYG00000024067)	ENSCHYG00000024372	C3orf20 (ENSCHYG00000024531)	FGD5 (ENSCHYG00000024639)	NR2C2 (ENSCHYG00000024864)	ENSCHYG00000025047	RBSN (ENSCHYG00000025089)	ENSCHYG00000025128 #20	TIMP4 (ENSCHYG00000025170) #21	PPARG (ENSCHYG00000025198) #22	TSEN2 (ENSCHYG00000025333) #25	MKRN2OS (ENSCHYG00000025406) #26	MKRN2 (ENSCHYG00000025428) #27	RAF1 (ENSCHYG00000025496) #28	ENSCHYG00000013805	TMEM40 (ENSCHYG00000013848) #29	CAND2 (ENSCHYG00000014141) #30	ENSCHYG00000014472	ENSCHYG00000014488	EFCAB12 (ENSCHYG00000014606)	MBD4 (ENSCHYG00000014755)	IFT122 (ENSCHYG00000015047)	RHO (ENSCHYG00000017188)	H1-8 (ENSCHYG00000017241)	ENSCHYG00000017294
Percora_a	ANCESTRAL SPECIES	19	ENSGT00940000155721	ENSGT00390000012690	ENSGT00940000155616.c.a.b	ENSGT00390000004064 #8	ENSGT00940000153393.B #9	ENSGT00910000147252	ENSGT00940000161461 #10	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00390000017530 #29	ENSGT00390000017740.a.b #30	ENSGT00940000153973.d	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951
Siberian musk deer	MODERN SPECIES	1221	CLEC3B (ENSMMSG00000018700)	EXOSC7 (ENSMMSG00000018645)	ENSMMSG00000018519	TMEM42 (ENSMMSG00000018480)	ENSMMSG00000018446 #8	SEC13 (ENSMMSG00000018353) #9	ATP2B2 (ENSMMSG00000015764) #10	SLC6A11 (ENSMMSG00000015601) #11	SLC6A1 (ENSMMSG00000015486) #12	HRH1 (ENSMMSG00000015454) #16	ATG7 (ENSMMSG00000015338) #17	VGLL4 (ENSMMSG00000015264) #19	TAMM41 (ENSMMSG00000015235)	TIMP4 (ENSMMSG00000015209) #21	SYN2 (ENSMMSG00000015141) #20	PPARG (ENSMMSG00000015004) #22	TSEN2 (ENSMMSG00000014963) #25	MKRN2OS (ENSMMSG00000014926) #26	MKRN2 (ENSMMSG00000014895) #27	RAF1 (ENSMMSG00000024157) #28	TMEM40 (ENSMMSG00000024144) #29	CAND2 (ENSMMSG00000024132) #30	RPL32 (ENSMMSG00000024124)	EFCAB12 (ENSMMSG00000024116)	MBD4 (ENSMMSG00000024114)	IFT122 (ENSMMSG00000024092)	RHO (ENSMMSG00000024086)	ENSMMSG00000024082	PLXND1 (ENSMMSG00000024073)	TMCC1 (ENSMMSG00000024064)	ENSMMSG00000024063
Bovidae	ANCESTRAL SPECIES	19	ENSGT00390000013132	ENSGT00390000009671 #37	ENSGT00390000005194	ENSGT00390000013951	ENSGT00940000154583	ENSGT00940000155615	ENSGT00440000033958	ENSGT00940000153655.B	ENSGT00940000157922	ENSGT00940000158393	ENSGT00640000091558	ENSGT00390000007159	ENSGT00390000000616.l	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00390000017530 #29	ENSGT00390000017740.a.b #30	ENSGT00940000153973.d	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951
Caprinae	ANCESTRAL SPECIES	15	ENSGT00390000013132	ENSGT00390000009671 #37	ENSGT00390000005194	ENSGT00390000013951	ENSGT00940000154583	ENSGT00940000155615	ENSGT00440000033958	ENSGT00940000153655.B	ENSGT00940000157922	ENSGT00940000158393	ENSGT00640000091558	ENSGT00390000007159	ENSGT00390000000616.l	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00390000017530 #29	ENSGT00390000017740.a.b #30	ENSGT00940000153973.d	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951
Goat	MODERN SPECIES	14	CHCHD4 (ENSCHIG00000018477)	TMEM43 (ENSCHIG00000020802) #37	XPC (ENSCHIG00000017709)	LSM3 (ENSCHIG00000024650)	SLC6A6 (ENSCHIG00000024785)	GRIP2 (ENSCHIG00000016620)	CCDC174 (ENSCHIG00000008286)	C3orf20 (ENSCHIG00000009719)	FGD5 (ENSCHIG00000023792)	NR2C2 (ENSCHIG00000008676)	MRPS25 (ENSCHIG00000009931)	RBSN (ENSCHIG00000019361)	ENSCHIG00000027078	TIMP4 (ENSCHIG00000017995) #21	SYN2 (ENSCHIG00000024912) #20	PPARG (ENSCHIG00000015877) #22	TSEN2 (ENSCHIG00000013772) #25	MKRN2OS (ENSCHIG00000013445) #26	MKRN2 (ENSCHIG00000021098) #27	RAF1 (ENSCHIG00000006954) #28	CAND2 (ENSCHIG00000017799) #30	RPL32 (ENSCHIG00000011099)	EFCAB12 (ENSCHIG00000024180)	MBD4 (ENSCHIG00000009760)	IFT122 (ENSCHIG00000018009)	RHO (ENSCHIG00000019086)	H1-8 (ENSCHIG00000015286)	PLXND1 (ENSCHIG00000008763)	ENSCHIG00000016746	ENSCHIG00000015861	TRH (ENSCHIG00000025325)
Rambouillet Sheep	MODERN SPECIES	10	WNT7A (ENSOARG00020025976) #36	ENSOARG00020025971	ENSOARG00020025966	CHCHD4 (ENSOARG00020025962)	TMEM43 (ENSOARG00020025957) #37	ENSOARG00020025950	SLC6A6 (ENSOARG00020025943)	GRIP2 (ENSOARG00020025919)	CCDC174 (ENSOARG00020025904)	C3orf20 (ENSOARG00020025893)	NR2C2 (ENSOARG00020025878)	MRPS25 (ENSOARG00020025871)	RBSN (ENSOARG00020025862)	ENSOARG00020025856 #21	SYN2 (ENSOARG00020025846) #20	PPARG (ENSOARG00020025834) #22	TSEN2 (ENSOARG00020025828) #25	MKRN2OS (ENSOARG00020025824) #26	MKRN2 (ENSOARG00020025818) #27	RAF1 (ENSOARG00020025810) #28	TMEM40 (ENSOARG00020025803) #29	CAND2 (ENSOARG00020025794) #30	RPL32 (ENSOARG00020025785)	EFCAB12 (ENSOARG00020025775)	MBD4 (ENSOARG00020025769)	IFT122 (ENSOARG00020025765)	RHO (ENSOARG00020025763)	ENSOARG00020025760	PLXND1 (ENSOARG00020025735)	TMCC1 (ENSOARG00020025721)	TRH (ENSOARG00020025716)
Bovinae	ANCESTRAL SPECIES	16	ENSGT00390000013132	ENSGT00390000009671 #37	ENSGT00390000005194	ENSGT00390000013951	ENSGT00940000154583	ENSGT00940000155615	ENSGT00440000033958	ENSGT00940000153655.B	ENSGT00940000157922	ENSGT00940000158393	ENSGT00640000091558	ENSGT00390000007159	ENSGT00390000000616.l	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00390000017530 #29	ENSGT00390000017740.a.b #30	ENSGT00940000153973.d	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000175447	ENSGT00930000152979
American bison	MODERN SPECIES	3340	ENSBBBG00000010906	ENSBBBG00000001941	CHCHD4 (ENSBBBG00000010930)	TMEM43 (ENSBBBG00000010956) #37	XPC (ENSBBBG00000001954)	LSM3 (ENSBBBG00000007967)	SLC6A6 (ENSBBBG00000010987)	GRIP2 (ENSBBBG00000011088)	CCDC174 (ENSBBBG00000002003)	C3orf20 (ENSBBBG00000011153)	NR2C2 (ENSBBBG00000011226)	MRPS25 (ENSBBBG00000011234)	RBSN (ENSBBBG00000011250)	TIMP4 (ENSBBBG00000011264) #21	SYN2 (ENSBBBG00000011280) #20	PPARG (ENSBBBG00000011336) #22	TSEN2 (ENSBBBG00000002087) #25	MKRN2OS (ENSBBBG00000006934) #26	MKRN2 (ENSBBBG00000011440) #27	RAF1 (ENSBBBG00000011493) #28	TMEM40 (ENSBBBG00000011569) #29	CAND2 (ENSBBBG00000002144) #30	RPL32 (ENSBBBG00000002148)	EFCAB12 (ENSBBBG00000011681)	MBD4 (ENSBBBG00000011698)	IFT122 (ENSBBBG00000002240)	RHO (ENSBBBG00000012003)	ENSBBBG00000012007	ENSBBBG00000012012	TMCC1 (ENSBBBG00000012034)	ENSBBBG00000012036
Bos	ANCESTRAL SPECIES	16	ENSGT00390000013132	ENSGT00390000009671 #37	ENSGT00390000005194	ENSGT00390000013951	ENSGT00940000154583	ENSGT00940000155615	ENSGT00440000033958	ENSGT00940000153655.B	ENSGT00940000157922	ENSGT00940000158393	ENSGT00640000091558	ENSGT00390000007159	ENSGT00390000000616.l	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00390000017530 #29	ENSGT00390000017740.a.b #30	ENSGT00940000153973.d	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000175447	ENSGT00930000152979
Bos_b	ANCESTRAL SPECIES	17	ENSGT00390000013132	ENSGT00390000009671 #37	ENSGT00390000005194	ENSGT00390000013951	ENSGT00940000154583	ENSGT00940000155615	ENSGT00440000033958	ENSGT00940000153655.B	ENSGT00940000157922	ENSGT00940000158393	ENSGT00640000091558	ENSGT00390000007159	ENSGT00390000000616.l	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00390000017530 #29	ENSGT00390000017740.a.b #30	ENSGT00940000153973.d	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951
Hybrid Bos Indicus	MODERN SPECIES	14	CHCHD4 (ENSBIXG00005027940)	TMEM43 (ENSBIXG00005027897) #37	LSM3 (ENSBIXG00005027836)	SLC6A6 (ENSBIXG00005027782)	GRIP2 (ENSBIXG00005027668)	ENSBIXG00005027488	ENSBIXG00005027475	CCDC174 (ENSBIXG00005027454)	C3orf20 (ENSBIXG00005027421)	FGD5 (ENSBIXG00005027347)	NR2C2 (ENSBIXG00005026766)	MRPS25 (ENSBIXG00005026733)	RBSN (ENSBIXG00005026693)	SYN2 (ENSBIXG00005026582) #20	TIMP4 (ENSBIXG00005026516) #21	ENSBIXG00005026465 #22	MKRN2OS (ENSBIXG00005026155) #26	MKRN2 (ENSBIXG00005026143) #27	RAF1 (ENSBIXG00005004450) #28	TMEM40 (ENSBIXG00005026020) #29	CAND2 (ENSBIXG00005025955) #30	RPL32 (ENSBIXG00005025898)	MBD4 (ENSBIXG00005025831)	IFT122 (ENSBIXG00005025735)	RHO (ENSBIXG00005025616)	ENSBIXG00005025593	PLXND1 (ENSBIXG00005025560)	TMCC1 (ENSBIXG00005025216)	ENSBIXG00005025137	ENSBIXG00005025108	TRH (ENSBIXG00005025098)
Cow	MODERN SPECIES	14	CHCHD4 (ENSBTAG00000015529)	TMEM43 (ENSBTAG00000007360) #37	XPC (ENSBTAG00000007362)	LSM3 (ENSBTAG00000007363)	SLC6A6 (ENSBTAG00000011088)	GRIP2 (ENSBTAG00000011896)	CCDC174 (ENSBTAG00000038298)	C22H3orf20 (ENSBTAG00000040133)	FGD5 (ENSBTAG00000006789)	NR2C2 (ENSBTAG00000013716)	MRPS25 (ENSBTAG00000013723)	RBSN (ENSBTAG00000013725)	ENSBTAG00000031115	TIMP4 (ENSBTAG00000020263) #21	SYN2 (ENSBTAG00000020260) #20	PPARG (ENSBTAG00000001333) #22	TSEN2 (ENSBTAG00000037980) #25	MKRN2OS (ENSBTAG00000024991) #26	MKRN2 (ENSBTAG00000004512) #27	RAF1 (ENSBTAG00000045748) #28	TMEM40 (ENSBTAG00000000161) #29	CAND2 (ENSBTAG00000015273) #30	RPL32 (ENSBTAG00000015283)	EFCAB12 (ENSBTAG00000021643)	MBD4 (ENSBTAG00000021645)	IFT122 (ENSBTAG00000019121)	RHO (ENSBTAG00000001310)	H1-8 (ENSBTAG00000001812)	PLXND1 (ENSBTAG00000001814)	TMCC1 (ENSBTAG00000006614)	TRH (ENSBTAG00000005306)
Bos_a	ANCESTRAL SPECIES	9	ENSGT01030000234553.b.b.d.c.b.e	ENSGT00390000013132	ENSGT00390000009671 #37	ENSGT00390000005194	ENSGT00390000013951	ENSGT00940000154583	ENSGT00940000155615	ENSGT00440000033958	ENSGT00940000153655.B	ENSGT00940000157922	ENSGT00940000158393	ENSGT00640000091558	ENSGT00390000007159	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00390000017530 #29	ENSGT00390000017740.a.b #30	ENSGT00940000153973.d	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT00940000175447	ENSGT00930000152979	ENSGT00940000155189	ENSGT00390000016951
Wild yak	MODERN SPECIES	1473														ENSBMUG00000011252 #21	SYN2 (ENSBMUG00000011214) #20	PPARG (ENSBMUG00000011177) #22	MKRN2OS (ENSBMUG00000011070) #26	MKRN2 (ENSBMUG00000011049) #27	RAF1 (ENSBMUG00000011029) #28	ENSBMUG00000010983	TMEM40 (ENSBMUG00000010953) #29	CAND2 (ENSBMUG00000010855) #30	RPL32 (ENSBMUG00000010768)	EFCAB12 (ENSBMUG00000010745)	MBD4 (ENSBMUG00000010711)	IFT122 (ENSBMUG00000010042)	RHO (ENSBMUG00000009767)	ENSBMUG00000009729	ENSBMUG00000009719	TMCC1 (ENSBMUG00000009638)	ENSBMUG00000009609
Domestic yak	MODERN SPECIES	14	ENSBGRG00000018493	CHCHD4 (ENSBGRG00000018588)	TMEM43 (ENSBGRG00000018668) #37	XPC (ENSBGRG00000018846)	ENSBGRG00000019432	SLC6A6 (ENSBGRG00000019545)	GRIP2 (ENSBGRG00000020144)	CCDC174 (ENSBGRG00000021048)	C3orf20 (ENSBGRG00000021321)	FGD5 (ENSBGRG00000021386)	NR2C2 (ENSBGRG00000021614)	MRPS25 (ENSBGRG00000021676)	RBSN (ENSBGRG00000021762)	SYN2 (ENSBGRG00000021920) #20	TIMP4 (ENSBGRG00000022226) #21	ENSBGRG00000022315 #22	MKRN2OS (ENSBGRG00000022696) #26	MKRN2 (ENSBGRG00000022735) #27	RAF1 (ENSBGRG00000022891) #28	TMEM40 (ENSBGRG00000023210) #29	CAND2 (ENSBGRG00000023333) #30	RPL32 (ENSBGRG00000023548)	EFCAB12 (ENSBGRG00000023675)	MBD4 (ENSBGRG00000023851)	IFT122 (ENSBGRG00000023990)	RHO (ENSBGRG00000024373)	ENSBGRG00000024409	ENSBGRG00000024437	ENSBGRG00000024462	TMCC1 (ENSBGRG00000024493)	ENSBGRG00000024583
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00940000158273 #22
Common shrew	MODERN SPECIES	2150																PPARG (ENSSARG00000009808) #22
Hedgehog	MODERN SPECIES	2893																PPARG (ENSEEUG00000006334) #22
Atlantogenata	ANCESTRAL SPECIES	34	ENSGT00390000011082	ENSGT00390000014353	ENSGT00940000159835	ENSGT00940000155616	ENSGT00390000004064 #8	ENSGT00940000153393.B #9	ENSGT00940000161461 #10	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00390000017530 #29	ENSGT00390000017740.a.b #30	ENSGT00940000153973.c.a.a	ENSGT00940000153973.c.a.b.b	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189
Xenarthra	ANCESTRAL SPECIES	662														ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00390000017740.a.b #30
Armadillo	MODERN SPECIES	1334														SYN2 (ENSDNOG00000012852) #20	TIMP4 (ENSDNOG00000012868) #21	PPARG (ENSDNOG00000018641) #22	TSEN2 (ENSDNOG00000038504) #25	MKRN2OS (ENSDNOG00000042709) #26	ENSDNOG00000017476 #27	RAF1 (ENSDNOG00000009252) #28	CAND2 (ENSDNOG00000040049) #30
Sloth	MODERN SPECIES	2493																PPARG (ENSCHOG00000007152) #22
Afrotheria	ANCESTRAL SPECIES	32	ENSGT00390000016970	ENSGT00390000000631	ENSGT00390000011082	ENSGT00390000014353	ENSGT00940000159835	ENSGT00940000155616	ENSGT00390000004064 #8	ENSGT00940000153393.B #9	ENSGT00940000161461 #10	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00390000017530 #29	ENSGT00390000017740.a.b #30	ENSGT00940000153973.c.a.a	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951	ENSGT00390000007159
Afrotheria_a	ANCESTRAL SPECIES	32	ENSGT00390000011082	ENSGT00390000014353	ENSGT00940000159835	ENSGT00940000155616	ENSGT00390000004064 #8	ENSGT00940000153393.B #9	ENSGT00940000161461 #10	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00390000017530 #29	ENSGT00390000017740.a.b #30	ENSGT00940000153973.c.a.a	ENSGT00390000014874	ENSGT00530000063687.a	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951	ENSGT00390000007159
Elephant	MODERN SPECIES	49	BRK1 (ENSLAFG00000011665)	ENSLAFG00000016353	IRAK2 (ENSLAFG00000002546)	TATDN2 (ENSLAFG00000028812)	GHRL (ENSLAFG00000014068) #8	SEC13 (ENSLAFG00000014598) #9	ATP2B2 (ENSLAFG00000014604) #10	SLC6A11 (ENSLAFG00000016494) #11	SLC6A1 (ENSLAFG00000022374) #12	HRH1 (ENSLAFG00000017128) #16	ATG7 (ENSLAFG00000017130) #17	VGLL4 (ENSLAFG00000017133) #19	TAMM41 (ENSLAFG00000011239)	TIMP4 (ENSLAFG00000004660) #21	SYN2 (ENSLAFG00000004657) #20	PPARG (ENSLAFG00000030870) #22	TSEN2 (ENSLAFG00000009300) #25	MKRN2 (ENSLAFG00000011601) #27	RAF1 (ENSLAFG00000011608) #28	TMEM40 (ENSLAFG00000010230) #29	CAND2 (ENSLAFG00000017706) #30	ENSLAFG00000032737	EFCAB12 (ENSLAFG00000010605)	MBD4 (ENSLAFG00000010609)	IFT122 (ENSLAFG00000010612)	RHO (ENSLAFG00000001359)	PLXND1 (ENSLAFG00000003012)	TMCC1 (ENSLAFG00000013730)	TRH (ENSLAFG00000015165)	RBSN (ENSLAFG00000004227)	MRPS25 (ENSLAFG00000022178)
Hyrax	MODERN SPECIES	10291																PPARG (ENSPCAG00000001034) #22
Tenrec	MODERN SPECIES	2807																PPARG (ENSETEG00000001775) #22
Marsupialia	ANCESTRAL SPECIES	14	ENSGT00390000014353	ENSGT00940000159835	ENSGT00940000155616	ENSGT00390000004064 #8	ENSGT00940000153393.B #9	ENSGT00940000161461 #10	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00940000154650.d.g.b.a.a.a.b	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00390000017530 #29	ENSGT00390000017740.a.b #30	ENSGT00940000153973	ENSGT00390000014874	ENSGT00530000063687.a.a	ENSGT00530000063687.a.b	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189
Marsupialia_b	ANCESTRAL SPECIES	14	ENSGT00390000014353	ENSGT00940000159835	ENSGT00940000155616	ENSGT00390000004064 #8	ENSGT00940000153393.B #9	ENSGT00940000161461 #10	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00940000154650.d.g.b.a.a.a.b	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00390000017530 #29	ENSGT00390000017740.a.b #30	ENSGT00940000153973	ENSGT00390000014874	ENSGT00530000063687.a.a	ENSGT00530000063687.a.b	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT00940000160900	ENSGT01020000230394.e.b.a	ENSGT00940000155189
Diprotodontia	ANCESTRAL SPECIES	12	ENSGT00390000014353	ENSGT00940000159835	ENSGT00940000155616	ENSGT00390000004064 #8	ENSGT00940000153393.B #9	ENSGT00940000161461 #10	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00940000154650.d.g.b.a.a.a.b	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00390000017530 #29	ENSGT00390000017740.a.b #30	ENSGT00940000153973	ENSGT00390000014874	ENSGT00530000063687.a.a	ENSGT00530000063687.a.b	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951
Diprotodontia_a	ANCESTRAL SPECIES	10	ENSGT00390000014353	ENSGT00940000159835	ENSGT00940000155616	ENSGT00390000004064 #8	ENSGT00940000153393.B #9	ENSGT00940000161461 #10	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00940000154650.d.g.b.a.a.a.b	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00390000017530 #29	ENSGT00390000017740.a.b #30	ENSGT00940000153973	ENSGT00390000014874	ENSGT00530000063687.a.a	ENSGT00530000063687.a.b	ENSGT00390000001016.b	ENSGT01030000234549.a.a.a.a.a.b.b	ENSGT01020000230394.e.b.a	ENSGT00940000155189	ENSGT00390000016951
Common wonbat	MODERN SPECIES	1012	ENSVURG00010011465	IRAK2 (ENSVURG00010011479)	TATDN2 (ENSVURG00010011558)	GHRL (ENSVURG00010011569) #8	ENSVURG00010011601 #10	SLC6A11 (ENSVURG00010011698) #11	ENSVURG00010011722	SLC6A1 (ENSVURG00010011767) #12	HRH1 (ENSVURG00010012968) #16	ATG7 (ENSVURG00010012989) #17	VGLL4 (ENSVURG00010013026) #19	TAMM41 (ENSVURG00010013046)	ENSVURG00010013071 #20	TIMP4 (ENSVURG00010013076) #21	ENSVURG00010013080 #20	PPARG (ENSVURG00010013093) #22	TSEN2 (ENSVURG00010013138) #25	MKRN2OS (ENSVURG00010013158) #26	MKRN2 (ENSVURG00010013169) #27	RAF1 (ENSVURG00010013196) #28	TMEM40 (ENSVURG00010013215) #29	CAND2 (ENSVURG00010013279) #30	ENSVURG00010014192	ENSVURG00010014212	ENSVURG00010014225	IFT122 (ENSVURG00010014263)	RHO (ENSVURG00010014434)	PLXND1 (ENSVURG00010014456)	TMCC1 (ENSVURG00010014518)	RBSN (ENSVURG00010014533)	MRPS25 (ENSVURG00010014548)
koala	MODERN SPECIES	10	ENSPCIG00000032547	IRAK2 (ENSPCIG00000021915)	ENSPCIG00000021916	GHRL (ENSPCIG00000021917) #8	ENSPCIG00000021918 #9	ATP2B2 (ENSPCIG00000024350) #10	SLC6A11 (ENSPCIG00000011028) #11	SLC6A1 (ENSPCIG00000011049) #12	HRH1 (ENSPCIG00000011053) #16	ENSPCIG00000011056	ATG7 (ENSPCIG00000011062) #17	VGLL4 (ENSPCIG00000011097) #19	TAMM41 (ENSPCIG00000036857)	SYN2 (ENSPCIG00000002007) #20	TIMP4 (ENSPCIG00000002040) #21	PPARG (ENSPCIG00000002060) #22	TSEN2 (ENSPCIG00000002191) #25	MKRN2OS (ENSPCIG00000002201) #26	MKRN2 (ENSPCIG00000031653) #27	RAF1 (ENSPCIG00000009694) #28	TMEM40 (ENSPCIG00000002215) #29	CAND2 (ENSPCIG00000002229) #30	RPL32 (ENSPCIG00000036095)	ENSPCIG00000002263	ENSPCIG00000002276	ENSPCIG00000035263	IFT122 (ENSPCIG00000002304)	RHO (ENSPCIG00000002359)	PLXND1 (ENSPCIG00000002459)	TMCC1 (ENSPCIG00000002496)	ENSPCIG00000023527
Wallaby	MODERN SPECIES	3764																PPARG (ENSMEUG00000007824) #22
Tasmanian devil	MODERN SPECIES		IRAK2 (ENSSHAG00000016281)	TATDN2 (ENSSHAG00000016457)	GHRL (ENSSHAG00000021643) #8	SEC13 (ENSSHAG00000016558) #9	ENSSHAG00000017272 #10	SLC6A11 (ENSSHAG00000026964) #11	ENSSHAG00000018140 #12	HRH1 (ENSSHAG00000028397) #16	ATG7 (ENSSHAG00000022602) #17	ENSSHAG00000031478	ENSSHAG00000027506	ENSSHAG00000018702 #19	TAMM41 (ENSSHAG00000018802)	SYN2 (ENSSHAG00000006422) #20	TIMP4 (ENSSHAG00000006738) #21	PPARG (ENSSHAG00000008610) #22	TSEN2 (ENSSHAG00000010530) #25	MKRN2OS (ENSSHAG00000010787) #26	ENSSHAG00000011021 #27	RAF1 (ENSSHAG00000011099) #28	TMEM40 (ENSSHAG00000012194) #29	CAND2 (ENSSHAG00000012567) #30	ENSSHAG00000012782	ENSSHAG00000012822	MBD4 (ENSSHAG00000012953)	IFT122 (ENSSHAG00000013078)	RHO (ENSSHAG00000013534)	ENSSHAG00000029482	PLXND1 (ENSSHAG00000013651)	TMCC1 (ENSSHAG00000014733)	ENSSHAG00000026312
Opossum	MODERN SPECIES	5	ENSMODG00000028514	IRAK2 (ENSMODG00000005480)	TATDN2 (ENSMODG00000005496)	ENSMODG00000039480 #8	SEC13 (ENSMODG00000005505) #9	ATP2B2 (ENSMODG00000005537) #10	SLC6A11 (ENSMODG00000005602) #11	SLC6A1 (ENSMODG00000005984) #12	HRH1 (ENSMODG00000006000) #16	ENSMODG00000006043	ATG7 (ENSMODG00000006136) #17	VGLL4 (ENSMODG00000006145) #19	ENSMODG00000006153	SYN2 (ENSMODG00000006159) #20	TIMP4 (ENSMODG00000006199) #21	PPARG (ENSMODG00000006233) #22	TSEN2 (ENSMODG00000006249) #25	MKRN2OS (ENSMODG00000006265) #26	MKRN2 (ENSMODG00000006280) #27	RAF1 (ENSMODG00000006307) #28	ENSMODG00000025518 #29	CAND2 (ENSMODG00000006377) #30	RPL32 (ENSMODG00000037211)	ENSMODG00000006335	ENSMODG00000006399	ENSMODG00000042737	IFT122 (ENSMODG00000006462)	RHO (ENSMODG00000006488)	ENSMODG00000028422	PLXND1 (ENSMODG00000006963)	TMCC1 (ENSMODG00000006987)
Platypus	MODERN SPECIES	83				ENSOANG00000043679	ENSOANG00000036327	MKNK2 (ENSOANG00000048798)	MOB3A (ENSOANG00000040976)	ENSOANG00000050388	DOT1L (ENSOANG00000010015)	ENSOANG00000036300	OAZ1 (ENSOANG00000000654)	ENSOANG00000030064	LINGO3 (ENSOANG00000003705)	SEMA3G (ENSOANG00000013236)	SYN2 (ENSOANG00000020050) #20	PPARG (ENSOANG00000046286) #22	ISY1 (ENSOANG00000013141)	ENSOANG00000045625	RAF1 (ENSOANG00000005684) #28	MKRN2 (ENSOANG00000038817) #27	MKRN2OS (ENSOANG00000039177) #26	ENSOANG00000011648 #25	CIAO2B (ENSOANG00000045690)	RRAD (ENSOANG00000013935)	ENSOANG00000042386	PDP2 (ENSOANG00000015274)	CA7 (ENSOANG00000012209)	ENSOANG00000031931	ENSOANG00000029079	ENSOANG00000030783	ENSOANG00000032301
Sauria	ANCESTRAL SPECIES	13	ENSGT00940000160986	ENSGT00940000157238	ENSGT00390000011897	ENSGT00390000004860	ENSGT00620000089227	ENSGT00550000074921	ENSGT00940000161461 #10	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00950000183041.A	ENSGT00390000014109.d	ENSGT00940000164112.a	ENSGT00940000161980	ENSGT00530000064244.a	ENSGT00950000183014.f.b.a.b	ENSGT00940000163561	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #32	ENSGT00390000009491.d #33
Archelosauria	ANCESTRAL SPECIES	17	ENSGT00940000160986	ENSGT00940000157238	ENSGT00390000011897	ENSGT00390000004860	ENSGT00620000089227	ENSGT00550000074921	ENSGT00940000161461 #10	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00950000183041.A	ENSGT00390000014109.d	ENSGT00940000164112.a	ENSGT00940000161980	ENSGT00530000064244.a	ENSGT00940000163561	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #32	ENSGT00390000009491.d #33	ENSGT00940000156308 #34
Cryptodira	ANCESTRAL SPECIES	41	ENSGT00940000157444	ENSGT00940000160986	ENSGT00940000157238	ENSGT00390000011897	ENSGT00390000004860	ENSGT00550000074921	ENSGT00940000161461 #10	ENSGT00940000157569.b #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00950000183041.A	ENSGT00390000014109.d	ENSGT00940000164112.a	ENSGT00940000161980	ENSGT00530000064244.a	ENSGT00950000183014.f.b.a.b	ENSGT00940000163561	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #32	ENSGT00390000009491.d #33
Testudinoidea	ANCESTRAL SPECIES	2	ENSGT00940000157444	ENSGT00940000160986	ENSGT00940000157238	ENSGT00390000011897	ENSGT00390000004860.nb	ENSGT00550000074921	ENSGT00940000161461 #10	ENSGT00940000157569.b #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00950000183041.A	ENSGT00390000014109.d	ENSGT00940000164112.a	ENSGT00940000161980	ENSGT00530000064244.a	ENSGT00950000183014.f.b.a.b	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #32	ENSGT00390000009491.d #33	ENSGT00940000156308 #34
Emydidae	ANCESTRAL SPECIES	9	ENSGT00940000157444	ENSGT00940000160986	ENSGT00940000157238	ENSGT00390000011897	ENSGT00390000004860.nb	ENSGT00550000074921	ENSGT00940000161461 #10	ENSGT00940000157569.b #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00950000183041.A	ENSGT00390000014109.d	ENSGT00940000164112.a	ENSGT00940000161980	ENSGT00530000064244.a	ENSGT00950000183014.f.b.a.b	ENSGT00940000163561	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #32	ENSGT00390000009491.d #33
Three-toed box turtle	MODERN SPECIES	107	OMD (ENSTMTG00000017048)	OGN (ENSTMTG00000017031)	CENPP (ENSTMTG00000017017)	ENSTMTG00000016992	ENSTMTG00000016954	IARS1 (ENSTMTG00000016725)	ENSTMTG00000016217 #10	SLC6A11 (ENSTMTG00000016054) #11	SLC6A1 (ENSTMTG00000015874) #12	HRH1 (ENSTMTG00000015850) #16	ATG7 (ENSTMTG00000015759) #17	VGLL4 (ENSTMTG00000015729) #19	TAMM41 (ENSTMTG00000015707)	TIMP4 (ENSTMTG00000015688) #21	SYN2 (ENSTMTG00000015621) #20	PPARG (ENSTMTG00000015596) #22	TSEN2 (ENSTMTG00000015573) #25	ENSTMTG00000015561	MKRN2 (ENSTMTG00000015544) #27	RAF1 (ENSTMTG00000015520) #28	ENSTMTG00000015505	ISY1 (ENSTMTG00000015483)	ENSTMTG00000015448	RAB43 (ENSTMTG00000015431)	GP9 (ENSTMTG00000010971)	EFCC1 (ENSTMTG00000010945)	CFAP92 (ENSTMTG00000010898)	ACAD9 (ENSTMTG00000010840)	IQSEC1 (ENSTMTG00000010796) #32
painted turtle	MODERN SPECIES	14		OMD (ENSCPBG00000006794)	OGN (ENSCPBG00000006790)	CENPP (ENSCPBG00000006781)	NOL8 (ENSCPBG00000006773)	IARS1 (ENSCPBG00000001174)	ENSCPBG00000000579 #10	SLC6A11 (ENSCPBG00000000487) #11	ENSCPBG00000000450	SLC6A1 (ENSCPBG00000000431) #12	HRH1 (ENSCPBG00000000415) #16	ATG7 (ENSCPBG00000000334) #17	TAMM41 (ENSCPBG00000000254)	TIMP4 (ENSCPBG00000026368) #21	SYN2 (ENSCPBG00000026365) #20	PPARG (ENSCPBG00000026361) #22	TSEN2 (ENSCPBG00000026359) #25	MKRN2OS (ENSCPBG00000026357) #26	MKRN2 (ENSCPBG00000026356) #27	RAF1 (ENSCPBG00000026352) #28	ENSCPBG00000026349	ENSCPBG00000026348	ISY1 (ENSCPBG00000026346)	ENSCPBG00000026344	RAB43 (ENSCPBG00000026343)	ENSCPBG00000026342
Testudinidae	ANCESTRAL SPECIES	5	ENSGT00940000157444	ENSGT00940000160986	ENSGT00940000157238	ENSGT00390000011897	ENSGT00390000004860.nb.c	ENSGT00550000074921	ENSGT00940000161461 #10	ENSGT00940000157569.b #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00950000183041.A	ENSGT00390000014109.c.b	ENSGT00940000167251	ENSGT00390000014109.d	ENSGT00940000164112.a	ENSGT00940000161980	ENSGT00530000064244.a	ENSGT00950000183014.f.b.a.b	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #32
Abingdon island giant tortoise	MODERN SPECIES	252														TIMP4 (ENSCABG00000022127) #21	SYN2 (ENSCABG00000022126) #20	PPARG (ENSCABG00000022125) #22	ENSCABG00000022124	TSEN2 (ENSCABG00000022123) #25	ENSCABG00000022122	MKRN2 (ENSCABG00000022121) #27	RAF1 (ENSCABG00000022083) #28
Goode s thornscrub tortoise	MODERN SPECIES	21	OMD (ENSGEVG00005015011)	OGN (ENSGEVG00005015045)	CENPP (ENSGEVG00005015104)	ENSGEVG00005015160	ENSGEVG00005015198	IARS1 (ENSGEVG00005015240)	ATP2B2 (ENSGEVG00005015471) #10	SLC6A11 (ENSGEVG00005017116) #11	SLC6A1 (ENSGEVG00005017316) #12	HRH1 (ENSGEVG00005017663) #16	ATG7 (ENSGEVG00005017701) #17	VGLL4 (ENSGEVG00005017769) #19	TAMM41 (ENSGEVG00005017797)	SYN2 (ENSGEVG00005017832) #20	TIMP4 (ENSGEVG00005017900) #21	PPARG (ENSGEVG00005017941) #22	TSEN2 (ENSGEVG00005017977) #25	MKRN2OS (ENSGEVG00005017994) #26	MKRN2 (ENSGEVG00005018003) #27	RAF1 (ENSGEVG00005018027) #28	ENSGEVG00005018078	ENSGEVG00005005307	ENSGEVG00005005367	ENSGEVG00005005430	RAB43 (ENSGEVG00005005485)	GP9 (ENSGEVG00005005510)	ENSGEVG00005005535	ENSGEVG00005005602	ACAD9 (ENSGEVG00005005630)	IQSEC1 (ENSGEVG00005005708) #32	NUP210 (ENSGEVG00005005766) #33
Chinese turtle	MODERN SPECIES	660						ENSPSIG00000015446	ENSPSIG00000015328	ENSPSIG00000015319	USP4 (ENSPSIG00000014081)	HRH1 (ENSPSIG00000000512) #16	ATG7 (ENSPSIG00000012300) #17	VGLL4 (ENSPSIG00000012119) #19	TAMM41 (ENSPSIG00000012037)	TIMP4 (ENSPSIG00000011745) #21	SYN2 (ENSPSIG00000011238) #20	PPARG (ENSPSIG00000011100) #22	ENSPSIG00000010669 #25	MKRN2OS (ENSPSIG00000010665) #26	MKRN2 (ENSPSIG00000010483) #27	RAF1 (ENSPSIG00000009677) #28	ENSPSIG00000009556	ISY1 (ENSPSIG00000009384)
Archosauria	ANCESTRAL SPECIES	24	ENSGT00940000160986	ENSGT00940000157238	ENSGT00390000011897	ENSGT00390000004860	ENSGT00620000089227	ENSGT00550000074921	ENSGT00940000161461 #10	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00950000183041.A	ENSGT00390000014109.d	ENSGT00940000164112.a	ENSGT00940000161980	ENSGT00530000064244.a	ENSGT00940000163561	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #32	ENSGT00390000009491.d #33	ENSGT00940000156308 #34
Aves	ANCESTRAL SPECIES	29	ENSGT00940000160986	ENSGT00940000157238	ENSGT00390000011897	ENSGT00390000004860	ENSGT00620000089227	ENSGT00550000074921	ENSGT00940000161461 #10	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00950000183041.A	ENSGT00390000014109.d	ENSGT00940000164112.a	ENSGT00940000161980	ENSGT00530000064244.a	ENSGT00940000163561	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #32	ENSGT00390000009491.d #33	ENSGT00940000156308 #34
Neognathae	ANCESTRAL SPECIES	27	ENSGT00940000160986	ENSGT00940000157238	ENSGT00390000011897	ENSGT00390000004860	ENSGT00620000089227	ENSGT00550000074921	ENSGT00940000161461 #10	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00950000183041.A	ENSGT00390000014109.d	ENSGT00940000164112.a	ENSGT00940000161980	ENSGT00530000064244.a	ENSGT00940000163561	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #32	ENSGT00390000009491.d #33	ENSGT00940000156308 #34
Galloanserae	ANCESTRAL SPECIES	26	ENSGT00940000160986	ENSGT00940000157238	ENSGT00390000011897	ENSGT00390000004860	ENSGT00620000089227	ENSGT00550000074921	ENSGT00940000161461 #10	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00950000183041.A	ENSGT00390000014109.d	ENSGT00940000164112.a	ENSGT00940000161980	ENSGT00530000064244.a	ENSGT00940000163561	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #32	ENSGT00390000009491.d #33	ENSGT00940000156308 #34
Anatidae	ANCESTRAL SPECIES	54	ENSGT00940000157444	ENSGT00940000160986	ENSGT00940000157238	ENSGT00390000011897	ENSGT00390000004860	ENSGT00550000074921	ENSGT00940000161461 #10	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT01030000235208	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00950000183041.A	ENSGT00390000014109.d	ENSGT00940000164112.a	ENSGT00940000161980	ENSGT00530000064244.a	ENSGT00950000183014.f.b.a.b	ENSGT00940000163561	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #32	ENSGT00390000009491.d #33
Pink-footed goose	MODERN SPECIES	110										HRH1 (ENSABRG00000009830) #16	ATG7 (ENSABRG00000009797) #17	VGLL4 (ENSABRG00000009786) #19	TAMM41 (ENSABRG00000009773)	TIMP4 (ENSABRG00000009748) #21	SYN2 (ENSABRG00000009741) #20	PPARG (ENSABRG00000009733) #22	TSEN2 (ENSABRG00000009724) #25	ENSABRG00000009722	MKRN2 (ENSABRG00000009708) #27	RAF1 (ENSABRG00000009695) #28	ENSABRG00000009679	ISY1 (ENSABRG00000009673)	ENSABRG00000009510	RAB43 (ENSABRG00000009489)	GP9 (ENSABRG00000009470)	EFCC1 (ENSABRG00000009460)	CFAP92 (ENSABRG00000009441)	ACAD9 (ENSABRG00000008890)	IQSEC1 (ENSABRG00000008262) #32	NUP210 (ENSABRG00000007910) #33	HDAC11 (ENSABRG00000007799) #34
Duck	MODERN SPECIES	4	NOL8 (ENSAPLG00000005526)	IARS1 (ENSAPLG00000005750)	ENSAPLG00000023001	ENSAPLG00000030112	ATP2B2 (ENSAPLG00000006083) #10	SLC6A11 (ENSAPLG00000006803) #11	SLC6A1 (ENSAPLG00000010815) #12	ENSAPLG00000024336	HRH1 (ENSAPLG00000011710) #16	ATG7 (ENSAPLG00000010216) #17	VGLL4 (ENSAPLG00000010053) #19	TAMM41 (ENSAPLG00000009828)	ENSAPLG00000028592	TIMP4 (ENSAPLG00000027938) #21	SYN2 (ENSAPLG00000009144) #20	PPARG (ENSAPLG00000009031) #22	ENSAPLG00000014992 #25	ENSAPLG00000017751	MKRN2 (ENSAPLG00000014833) #27	RAF1 (ENSAPLG00000014376) #28	ENSAPLG00000014227	ISY1 (ENSAPLG00000014136)	RAB43 (ENSAPLG00000026304)	GP9 (ENSAPLG00000001853)	ENSAPLG00000013971	ENSAPLG00000013916	ACAD9 (ENSAPLG00000013493)	IQSEC1 (ENSAPLG00000013323) #32	NUP210 (ENSAPLG00000012355) #33	HDAC11 (ENSAPLG00000012032) #34	FBLN2 (ENSAPLG00000014027) #35
Phasianidae	ANCESTRAL SPECIES	16	ENSGT00940000157444	ENSGT00940000160986	ENSGT00940000157238	ENSGT00390000004860	ENSGT00620000089227	ENSGT00550000074921	ENSGT00940000161461 #10	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00950000183041.A	ENSGT00390000014109.d	ENSGT00940000164112.a	ENSGT00940000161980	ENSGT00530000064244.a	ENSGT00940000163561	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #32	ENSGT00390000009491.d #33	ENSGT00940000156308 #34
Phasianidae_b	ANCESTRAL SPECIES	16	ENSGT00940000160986	ENSGT00940000157238	ENSGT00390000011897	ENSGT00390000004860	ENSGT00620000089227	ENSGT00550000074921	ENSGT00940000161461 #10	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00950000183041.A	ENSGT00390000014109.d	ENSGT00940000164112.a	ENSGT00940000161980	ENSGT00530000064244.a	ENSGT00940000163561	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #32	ENSGT00390000009491.d #33	ENSGT00940000156308 #34
Chicken	MODERN SPECIES	3	OMD (ENSGALG00010027204)	OGN (ENSGALG00010027205)	CENPP (ENSGALG00010027195)	NOL8 (ENSGALG00010027207)	ENSGALG00010028201	IARS1 (ENSGALG00010027218)	ATP2B2 (ENSGALG00010027231) #10	SLC6A11 (ENSGALG00010027234) #11	SLC6A1 (ENSGALG00010027240) #12	HRH1 (ENSGALG00010027243) #16	ATG7 (ENSGALG00010027247) #17	VGLL4 (ENSGALG00010027253) #19	TAMM41 (ENSGALG00010027263)	SYN2 (ENSGALG00010027905) #20	TIMP4 (ENSGALG00010027909) #21	PPARG (ENSGALG00010027917) #22	TSEN2 (ENSGALG00010027919) #25	MKRN2OS (ENSGALG00010027921) #26	MKRN2 (ENSGALG00010027925) #27	RAF1 (ENSGALG00010027930) #28	CNBP (ENSGALG00010027934)	ISY1 (ENSGALG00010027935)	ENSGALG00010027938	RAB43 (ENSGALG00010027943)	GP9 (ENSGALG00010027947)	ENSGALG00010027958	CFAP92 (ENSGALG00010027954)	ACAD9 (ENSGALG00010027965)	IQSEC1 (ENSGALG00010027975) #32	NUP210 (ENSGALG00010027980) #33	HDAC11 (ENSGALG00010027988) #34
Turkey	MODERN SPECIES	5	OMD (ENSMGAG00000004463)	OGN (ENSMGAG00000004478)	NOL8 (ENSMGAG00000004495)	IARS1 (ENSMGAG00000004555)	ENSMGAG00000004661 #10	SLC6A11 (ENSMGAG00000004717) #11	SLC6A1 (ENSMGAG00000004819) #12	HRH1 (ENSMGAG00000004868) #16	ATG7 (ENSMGAG00000004873) #17	ENSMGAG00000019207	VGLL4 (ENSMGAG00000004921) #19	TAMM41 (ENSMGAG00000004937)	ENSMGAG00000021149	SYN2 (ENSMGAG00000004944) #20	TIMP4 (ENSMGAG00000004964) #21	PPARG (ENSMGAG00000004981) #22	TSEN2 (ENSMGAG00000005015) #25	MKRN2 (ENSMGAG00000005057) #27	RAF1 (ENSMGAG00000005082) #28	ENSMGAG00000005152	ISY1 (ENSMGAG00000005181)	ENSMGAG00000005131	ENSMGAG00000005141	GP9 (ENSMGAG00000015506)	ENSMGAG00000005211	ACAD9 (ENSMGAG00000005216)	IQSEC1 (ENSMGAG00000005294) #32	NUP210 (ENSMGAG00000005324) #33	HDAC11 (ENSMGAG00000005351) #34	FBLN2 (ENSMGAG00000005381) #35	WNT7A (ENSMGAG00000005423) #36
Japanese quail	MODERN SPECIES	3	ECM2 (ENSCJPG00005012244)	ASPN (ENSCJPG00005012245)	OMD (ENSCJPG00005012246)	OGN (ENSCJPG00005012247)	ENSCJPG00005012248	IARS1 (ENSCJPG00005012250)	ENSCJPG00005012303 #10	SLC6A11 (ENSCJPG00005012307) #11	SLC6A1 (ENSCJPG00005012319) #12	HRH1 (ENSCJPG00005012860) #16	ATG7 (ENSCJPG00005012861) #17	VGLL4 (ENSCJPG00005012862) #19	TAMM41 (ENSCJPG00005012865)	SYN2 (ENSCJPG00005012866) #20	TIMP4 (ENSCJPG00005012867) #21	PPARG (ENSCJPG00005012868) #22	TSEN2 (ENSCJPG00005012869) #25	MKRN2 (ENSCJPG00005012870) #27	MKRN2OS (ENSCJPG00005012871) #26	RAF1 (ENSCJPG00005012872) #28	ENSCJPG00005012873	ISY1 (ENSCJPG00005012874)	ENSCJPG00005012875	RAB43 (ENSCJPG00005012876)	GP9 (ENSCJPG00005012877)	ENSCJPG00005012878	ENSCJPG00005012879	ACAD9 (ENSCJPG00005012880)	IQSEC1 (ENSCJPG00005012881) #32	NUP210 (ENSCJPG00005012882) #33	HDAC11 (ENSCJPG00005012883) #34
Neognathae_b	ANCESTRAL SPECIES	18	ENSGT00940000160986	ENSGT00940000157238	ENSGT00390000011897	ENSGT00390000004860	ENSGT00620000089227	ENSGT00550000074921	ENSGT00940000161461 #10	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00950000183041.A	ENSGT00390000014109.d	ENSGT00940000164112.a	ENSGT00940000161980	ENSGT00530000064244.a	ENSGT00940000163561	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #32	ENSGT00390000009491.d #33	ENSGT00940000156308 #34
Passeriformes	ANCESTRAL SPECIES	16	ENSGT00940000160986	ENSGT00940000157238	ENSGT00390000011897	ENSGT00390000004860	ENSGT00950000182865.b.b.b.c.a	ENSGT00550000074921	ENSGT00940000161461 #10	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00950000183041.A	ENSGT00390000014109.d	ENSGT00940000164112.a	ENSGT00940000161980	ENSGT00530000064244.a	ENSGT00940000163561	ENSGT00940000157312	ENSGT00940000156915 #32	ENSGT00390000009491.d #33	ENSGT00940000156308 #34	ENSGT00940000156047 #35
Great tit	MODERN SPECIES	3	FAM120A (ENSPMJG00000004272)	PHF2 (ENSPMJG00000004299)	BARX1 (ENSPMJG00000004323)	PTPDC1 (ENSPMJG00000004327)	IARS1 (ENSPMJG00000004334)	ATP2B2 (ENSPMJG00000004350) #10	SLC6A11 (ENSPMJG00000004374) #11	SLC6A1 (ENSPMJG00000004995) #12	HRH1 (ENSPMJG00000005006) #16	ATG7 (ENSPMJG00000005007) #17	VGLL4 (ENSPMJG00000005038) #19	TAMM41 (ENSPMJG00000005039)	ENSPMJG00000005042 #20	TIMP4 (ENSPMJG00000005043) #21	ENSPMJG00000005053 #20	PPARG (ENSPMJG00000005054) #22	TSEN2 (ENSPMJG00000005055) #25	MKRN2OS (ENSPMJG00000005056) #26	ENSPMJG00000005058 #27	RAF1 (ENSPMJG00000005061) #28	ENSPMJG00000005065	ENSPMJG00000005069	ISY1 (ENSPMJG00000005074)	ENSPMJG00000005079	RAB43 (ENSPMJG00000005081)	GP9 (ENSPMJG00000005082)	ENSPMJG00000005084	ENSPMJG00000005086	ENSPMJG00000005087	CENPP (ENSPMJG00000005088)	OGN (ENSPMJG00000005089)
Passeriformes_d	ANCESTRAL SPECIES	16	ENSGT00940000160986	ENSGT00940000157238	ENSGT00390000011897	ENSGT00390000004860	ENSGT00950000182865.b.b.b.c.a	ENSGT00550000074921	ENSGT00940000161461 #10	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00390000014300.p	ENSGT00950000183041.A	ENSGT00390000014109.d.b.a	ENSGT00940000164112.a	ENSGT00940000161980.f	ENSGT00530000064244.a	ENSGT00940000163561	ENSGT00940000157312	ENSGT00940000156915 #32	ENSGT00390000009491.d #33	ENSGT00940000156308 #34
Passeriformes_g	ANCESTRAL SPECIES	16	ENSGT00940000160986	ENSGT00940000157238	ENSGT00390000011897	ENSGT00390000004860	ENSGT00950000182865.b.b.b.c.a	ENSGT00550000074921	ENSGT00940000161461 #10	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00390000014300.p	ENSGT00950000183041.A	ENSGT00390000014109.d.b.a	ENSGT00940000164112.a	ENSGT00940000161980.f	ENSGT00530000064244.a	ENSGT00940000163561	ENSGT00940000157312	ENSGT00940000156915 #32	ENSGT00390000009491.d #33	ENSGT00940000156308 #34
Medium ground finch	MODERN SPECIES	321															SYN2 (ENSGFOG00000010635) #20	PPARG (ENSGFOG00000010112) #22	TSEN2 (ENSGFOG00000009700) #25	MKRN2 (ENSGFOG00000010465) #27	RAF1 (ENSGFOG00000010417) #28	ENSGFOG00000010404	ENSGFOG00000010397	ENSGFOG00000010387	ENSGFOG00000010368	RAB43 (ENSGFOG00000010361)	GP9 (ENSGFOG00000010358)
Passeroidea	ANCESTRAL SPECIES	16	ENSGT00940000160986	ENSGT00940000157238	ENSGT00390000011897	ENSGT00390000004860	ENSGT00950000182865.b.b.b.c.a	ENSGT00550000074921	ENSGT00940000161461 #10	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00390000014300.p	ENSGT00950000183041.A	ENSGT00390000014109.d.b.a	ENSGT00940000164112.a	ENSGT00940000161980.f	ENSGT00530000064244.a	ENSGT00940000163561	ENSGT00940000157312	ENSGT00940000156915 #32	ENSGT00390000009491.d #33	ENSGT00940000156308 #34
Zebra finch	MODERN SPECIES	3	PFKFB4 (ENSTGUG00000004588)	PRKCD (ENSTGUG00000004544)	ENSTGUG00000005422	ENSTGUG00000019357	IARS1 (ENSTGUG00000004410)	ATP2B2 (ENSTGUG00000004296) #10	SLC6A11 (ENSTGUG00000004225) #11	SLC6A1 (ENSTGUG00000004182) #12	HRH1 (ENSTGUG00000004180) #16	ATG7 (ENSTGUG00000004145) #17	VGLL4 (ENSTGUG00000004136) #19	TAMM41 (ENSTGUG00000004121)	SYN2 (ENSTGUG00000004093) #20	ENSTGUG00000025121	TIMP4 (ENSTGUG00000019602) #21	PPARG (ENSTGUG00000004069) #22	ENSTGUG00000025620	TSEN2 (ENSTGUG00000004044) #25	MKRN2OS (ENSTGUG00000028016) #26	MKRN2 (ENSTGUG00000004017) #27	RAF1 (ENSTGUG00000004006) #28	ENSTGUG00000004001	ENSTGUG00000003998	ENSTGUG00000003984	RAB43 (ENSTGUG00000021700)	GP9 (ENSTGUG00000003978)	ENSTGUG00000023307	ACAD9 (ENSTGUG00000003909)	IQSEC1 (ENSTGUG00000003876) #32	ENSTGUG00000003823 #33	ENSTGUG00000003803 #34
Common canary	MODERN SPECIES	15	ASPN (ENSSCAG00000012710)	OMD (ENSSCAG00000012707)	OGN (ENSSCAG00000012703)	CENPP (ENSSCAG00000012700)	ENSSCAG00000012697	IARS1 (ENSSCAG00000012686)	ATP2B2 (ENSSCAG00000012674) #10	SLC6A11 (ENSSCAG00000012356) #11	SLC6A1 (ENSSCAG00000011359) #12	HRH1 (ENSSCAG00000011131) #16	ATG7 (ENSSCAG00000011122) #17	VGLL4 (ENSSCAG00000011116) #19	TAMM41 (ENSSCAG00000011113)	TIMP4 (ENSSCAG00000011112) #21	SYN2 (ENSSCAG00000011108) #20	PPARG (ENSSCAG00000011103) #22	TSEN2 (ENSSCAG00000011099) #25	MKRN2OS (ENSSCAG00000011095) #26	MKRN2 (ENSSCAG00000011091) #27	RAF1 (ENSSCAG00000011068) #28	ENSSCAG00000011058	ENSSCAG00000011053	ISY1 (ENSSCAG00000011046)	ENSSCAG00000010990	RAB43 (ENSSCAG00000010955)	GP9 (ENSSCAG00000010953)	ENSSCAG00000010950	ENSSCAG00000010945	ENSSCAG00000010943	ACAD9 (ENSSCAG00000010788)	IQSEC1 (ENSSCAG00000010741) #32
Flycatcher	MODERN SPECIES	3	CENPP (ENSFALG00000024002)	NOL8 (ENSFALG00000009066)	ENSFALG00000009075	ENSFALG00000023030	IARS1 (ENSFALG00000010261)	ENSFALG00000000003 #10	ENSFALG00000028800	SLC6A11 (ENSFALG00000000004) #11	SLC6A1 (ENSFALG00000000005) #12	HRH1 (ENSFALG00000014152) #16	ATG7 (ENSFALG00000000006) #17	VGLL4 (ENSFALG00000000007) #19	TAMM41 (ENSFALG00000000008)	TIMP4 (ENSFALG00000023921) #21	SYN2 (ENSFALG00000000009) #20	PPARG (ENSFALG00000028484) #22	TSEN2 (ENSFALG00000000012) #25	MKRN2 (ENSFALG00000000015) #27	RAF1 (ENSFALG00000000018) #28	ENSFALG00000014288	ENSFALG00000025948	ENSFALG00000000023	ENSFALG00000000024	ENSFALG00000028736	ENSFALG00000000026	ENSFALG00000000031	IQSEC1 (ENSFALG00000000034) #32	NUP210 (ENSFALG00000000036) #33	HDAC11 (ENSFALG00000023220) #34	ENSFALG00000026076	FBLN2 (ENSFALG00000009172) #35
Neognathae_c	ANCESTRAL SPECIES	21	ENSGT00940000160986	ENSGT00940000157238	ENSGT00390000011897	ENSGT00390000004860	ENSGT00620000089227	ENSGT00550000074921	ENSGT00940000161461 #10	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00950000183041.A	ENSGT00390000014109.d	ENSGT00940000164112.a	ENSGT00940000161980	ENSGT00530000064244.a	ENSGT00940000163561	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #32	ENSGT00390000009491.d #33	ENSGT00940000156308 #34
Kakapo	MODERN SPECIES	3	OGN (ENSSHBG00005010777)	CENPP (ENSSHBG00005010756)	ENSSHBG00005010716	ENSSHBG00005010656	ENSSHBG00005010633	IARS1 (ENSSHBG00005009904)	ATP2B2 (ENSSHBG00005009663) #10	SLC6A11 (ENSSHBG00005009639) #11	SLC6A1 (ENSSHBG00005009619) #12	HRH1 (ENSSHBG00005009603) #16	ATG7 (ENSSHBG00005008229) #17	VGLL4 (ENSSHBG00005008062) #19	TAMM41 (ENSSHBG00005008045)	TIMP4 (ENSSHBG00005008034) #21	SYN2 (ENSSHBG00005008017) #20	PPARG (ENSSHBG00005008004) #22	TSEN2 (ENSSHBG00005007982) #25	MKRN2OS (ENSSHBG00005007967) #26	MKRN2 (ENSSHBG00005007960) #27	RAF1 (ENSSHBG00005007932) #28	ENSSHBG00005007914	ISY1 (ENSSHBG00005007896)	ENSSHBG00005007853	RAB43 (ENSSHBG00005007820)	GP9 (ENSSHBG00005007812)	ENSSHBG00005007802	CFAP92 (ENSSHBG00005007781)	ACAD9 (ENSSHBG00005007759)	IQSEC1 (ENSSHBG00005007655) #32	NUP210 (ENSSHBG00005007487) #33	HDAC11 (ENSSHBG00005007414) #34
Golden eagle	MODERN SPECIES	12	NOL8 (ENSACCG00020010262)	ENSACCG00020010237	ENSACCG00020010223	ENSACCG00020010204	ENSACCG00020010173	IARS1 (ENSACCG00020010143)	ATP2B2 (ENSACCG00020010108) #10	SLC6A11 (ENSACCG00020010066) #11	SLC6A1 (ENSACCG00020010053) #12	HRH1 (ENSACCG00020010042) #16	ATG7 (ENSACCG00020010015) #17	VGLL4 (ENSACCG00020009982) #19	TAMM41 (ENSACCG00020009963)	TIMP4 (ENSACCG00020009945) #21	SYN2 (ENSACCG00020009920) #20	PPARG (ENSACCG00020009885) #22	TSEN2 (ENSACCG00020009874) #25	MKRN2OS (ENSACCG00020009863) #26	MKRN2 (ENSACCG00020009843) #27	RAF1 (ENSACCG00020009762) #28	ENSACCG00020009718	ISY1 (ENSACCG00020009699)	ENSACCG00020009638	RAB43 (ENSACCG00020009539)	GP9 (ENSACCG00020009526)	ENSACCG00020009517	CFAP92 (ENSACCG00020009502)	ACAD9 (ENSACCG00020009474)	IQSEC1 (ENSACCG00020009446) #32	NUP210 (ENSACCG00020009416) #33	HDAC11 (ENSACCG00020009388) #34
African ostrich	MODERN SPECIES	1066	ECM2 (ENSSCUG00000014847)	ASPN (ENSSCUG00000014857)	OMD (ENSSCUG00000014863)	OGN (ENSSCUG00000014870)	NOL8 (ENSSCUG00000014881)	IARS1 (ENSSCUG00000014894)	ATP2B2 (ENSSCUG00000014930) #10	SLC6A11 (ENSSCUG00000014961) #11	SLC6A1 (ENSSCUG00000014975) #12	HRH1 (ENSSCUG00000014994) #16	ATG7 (ENSSCUG00000015003) #17	VGLL4 (ENSSCUG00000015010) #19	TAMM41 (ENSSCUG00000015017)	TIMP4 (ENSSCUG00000015038) #21	SYN2 (ENSSCUG00000015041) #20	PPARG (ENSSCUG00000015050) #22	TSEN2 (ENSSCUG00000015062) #25	MKRN2OS (ENSSCUG00000015069) #26	MKRN2 (ENSSCUG00000015071) #27	RAF1 (ENSSCUG00000015081) #28	ENSSCUG00000015086	ISY1 (ENSSCUG00000015087)	ENSSCUG00000015094	RAB43 (ENSSCUG00000015101)	GP9 (ENSSCUG00000015105)	CFAP92 (ENSSCUG00000015116)	ACAD9 (ENSSCUG00000015133)	NUP210 (ENSSCUG00000015147) #33	HDAC11 (ENSSCUG00000015163) #34	FBLN2 (ENSSCUG00000015170) #35	WNT7A (ENSSCUG00000015175) #36
Australian saltwater crocodile	MODERN SPECIES	37	ENSCPRG00005019196	ECM2 (ENSCPRG00005019195)	ASPN (ENSCPRG00005019194)	OMD (ENSCPRG00005019193)	OGN (ENSCPRG00005019192)	IARS1 (ENSCPRG00005019188)	ENSCPRG00005019186 #10	SLC6A11 (ENSCPRG00005019185) #11	SLC6A1 (ENSCPRG00005019184) #12	HRH1 (ENSCPRG00005019183) #16	ATG7 (ENSCPRG00005019181) #17	VGLL4 (ENSCPRG00005019180) #19	TAMM41 (ENSCPRG00005019178)	TIMP4 (ENSCPRG00005019177) #21	SYN2 (ENSCPRG00005019176) #20	PPARG (ENSCPRG00005019174) #22	TSEN2 (ENSCPRG00005019173) #25	MKRN2OS (ENSCPRG00005019172) #26	MKRN2 (ENSCPRG00005019171) #27	RAF1 (ENSCPRG00005019170) #28	ENSCPRG00005019169	ISY1 (ENSCPRG00005019167)	ENSCPRG00005019166	RAB43 (ENSCPRG00005019165)	ENSCPRG00005019163	GP9 (ENSCPRG00005019162)	ENSCPRG00005019161	CFAP92 (ENSCPRG00005019160)	ACAD9 (ENSCPRG00005019159)	IQSEC1 (ENSCPRG00005019158) #32	NUP210 (ENSCPRG00005019156) #33
Lepidosauria	ANCESTRAL SPECIES	14	ENSGT00940000157444	ENSGT00940000160986	ENSGT00940000157238	ENSGT00980000199506	ENSGT00390000004860	ENSGT00550000074921	ENSGT00940000161461 #10	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00950000183041.A	ENSGT00390000014109.d	ENSGT00940000164112.a	ENSGT00940000161980	ENSGT00530000064244.a	ENSGT00950000183014.f.b.a.b	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #32	ENSGT00390000009491.d #33	ENSGT00940000156047 #35
Episquamata	ANCESTRAL SPECIES	4	ENSGT00940000157444	ENSGT00940000160986	ENSGT00940000157238	ENSGT00980000199506	ENSGT00390000004860	ENSGT00550000074921	ENSGT00940000161461 #10	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00950000183041.A	ENSGT00390000014109.d	ENSGT00940000164112.a	ENSGT00940000161980	ENSGT00530000064244.a	ENSGT00950000183014.f.b.a.b	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #32	ENSGT00390000009491.d #33	ENSGT00940000156047 #35
Toxicofera	ANCESTRAL SPECIES	3	ENSGT00940000157444	ENSGT00940000160986	ENSGT00940000157238	ENSGT00980000199506	ENSGT00390000004860	ENSGT00550000074921	ENSGT00940000161461 #10	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00950000183041.A	ENSGT00390000014109.d	ENSGT00940000164112.a	ENSGT00940000161980	ENSGT00530000064244.a	ENSGT00950000183014.f.b.a.b	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #32	ENSGT00390000009491.d #33	ENSGT00940000156047 #35
Elapidae	ANCESTRAL SPECIES	2	ENSGT00940000159941	ENSGT00940000157444	ENSGT00940000160986	ENSGT00940000157238	ENSGT00390000004860	ENSGT00550000074921	ENSGT00940000161461 #10	ENSGT00940000157569.d #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062.k #20	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00950000183041.A	ENSGT00390000014109.d	ENSGT00940000164112.a	ENSGT00940000161980	ENSGT00530000064244.a	ENSGT00950000183014.f.b.a.b	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #32	ENSGT00390000009491.d #33	ENSGT00940000156047 #35
Elapidae_a	ANCESTRAL SPECIES	8	ENSGT00940000159941	ENSGT00940000157444	ENSGT00940000160986	ENSGT00940000157238	ENSGT00390000004860	ENSGT00550000074921	ENSGT00940000161461 #10	ENSGT00940000157569.d #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062.k #20	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00950000183041.A	ENSGT00390000014109.d	ENSGT00940000164112.a	ENSGT00940000161980	ENSGT00530000064244.a	ENSGT00950000183014.f.b.a.b	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #32	ENSGT00390000009491.d #33	ENSGT00940000156047 #35
Acanthophiinae	ANCESTRAL SPECIES	10	ENSGT00940000159941	ENSGT00940000157444	ENSGT00940000160986	ENSGT00940000157238	ENSGT00390000004860	ENSGT00550000074921	ENSGT00940000161461 #10	ENSGT00940000157569.d #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062.k #20	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00950000183041.A	ENSGT00390000014109.d	ENSGT00940000164112.a	ENSGT00940000161980	ENSGT00530000064244.a	ENSGT00950000183014.f.b.a.b	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #32	ENSGT00390000009491.d #33	ENSGT00940000156047 #35
Mainland tiger snake	MODERN SPECIES	2															ENSNSUG00000020113 #20	PPARG (ENSNSUG00000020114) #22	TSEN2 (ENSNSUG00000020115) #25	ENSNSUG00000020116	MKRN2 (ENSNSUG00000020117) #27	RAF1 (ENSNSUG00000020119) #28	ENSNSUG00000020120	ISY1 (ENSNSUG00000020121)	ENSNSUG00000020122	RAB43 (ENSNSUG00000020123)	ENSNSUG00000020124	GP9 (ENSNSUG00000020125)	ENSNSUG00000020128	ACAD9 (ENSNSUG00000020129)	IQSEC1 (ENSNSUG00000020130) #32	ENSNSUG00000020131	NUP210 (ENSNSUG00000020136) #33
Eastern brown snake	MODERN SPECIES	3	ECM2 (ENSPTXG00000009504)	ASPN (ENSPTXG00000009503)	OMD (ENSPTXG00000009502)	OGN (ENSPTXG00000009501)	NOL8 (ENSPTXG00000009500)	IARS1 (ENSPTXG00000009498)	ATP2B2 (ENSPTXG00000007129) #10	SLC6A11 (ENSPTXG00000007128) #11	SLC6A1 (ENSPTXG00000007090) #12	HRH1 (ENSPTXG00000007087) #16	ATG7 (ENSPTXG00000007086) #17	VGLL4 (ENSPTXG00000007085) #19	TAMM41 (ENSPTXG00000007075)	ENSPTXG00000007073 #21	SYN2 (ENSPTXG00000007068) #20	PPARG (ENSPTXG00000007067) #22	TSEN2 (ENSPTXG00000007066) #25	MKRN2OS (ENSPTXG00000007065) #26	MKRN2 (ENSPTXG00000007064) #27	RAF1 (ENSPTXG00000007063) #28	ENSPTXG00000007062	ISY1 (ENSPTXG00000007061)	ENSPTXG00000007055	RAB43 (ENSPTXG00000007054)	ENSPTXG00000007053	GP9 (ENSPTXG00000007052)	EFCC1 (ENSPTXG00000007051)	CFAP92 (ENSPTXG00000007050)	ACAD9 (ENSPTXG00000007049)	IQSEC1 (ENSPTXG00000006860) #32	NUP210 (ENSPTXG00000006850) #33
Blue-lipped sea krait	MODERN SPECIES	5541																PPARG (ENSLLTG00000006352) #22
Indian cobra	MODERN SPECIES	1	ASPN (ENSNNAG00000000503)	OMD (ENSNNAG00000000472)	OGN (ENSNNAG00000000453)	ENSNNAG00000000435	IARS1 (ENSNNAG00000018371)	ENSNNAG00000018337	ATP2B2 (ENSNNAG00000018213) #10	SLC6A11 (ENSNNAG00000018147) #11	SLC6A1 (ENSNNAG00000018109) #12	HRH1 (ENSNNAG00000018100) #16	ATG7 (ENSNNAG00000018034) #17	VGLL4 (ENSNNAG00000018012) #19	TAMM41 (ENSNNAG00000018006)	ENSNNAG00000018001 #21	SYN2 (ENSNNAG00000017991) #20	PPARG (ENSNNAG00000017984) #22	TSEN2 (ENSNNAG00000017971) #25	MKRN2OS (ENSNNAG00000017966) #26	MKRN2 (ENSNNAG00000017961) #27	RAF1 (ENSNNAG00000017955) #28	ENSNNAG00000017950	ENSNNAG00000017946	ISY1 (ENSNNAG00000017943)	ENSNNAG00000017924	RAB43 (ENSNNAG00000017921)	ENSNNAG00000017919	ENSNNAG00000017916	EFCC1 (ENSNNAG00000017915)	CFAP92 (ENSNNAG00000017912)	ACAD9 (ENSNNAG00000017867)	IQSEC1 (ENSNNAG00000017851) #32
Lizard	MODERN SPECIES	1	ENSACAG00000036368	ENSACAG00000038899	SLC6A11 (ENSACAG00000009875) #11	ENSACAG00000041468	SLC6A1 (ENSACAG00000010020) #12	ENSACAG00000035306	ENSACAG00000036621	ENSACAG00000043799	HRH1 (ENSACAG00000010219) #16	ATG7 (ENSACAG00000010224) #17	VGLL4 (ENSACAG00000010299) #19	TAMM41 (ENSACAG00000010318)	SYN2 (ENSACAG00000013404) #20	ENSACAG00000028862	TIMP4 (ENSACAG00000013457) #21	PPARG (ENSACAG00000013360) #22	TSEN2 (ENSACAG00000013345) #25	MKRN2OS (ENSACAG00000029532) #26	RAF1 (ENSACAG00000013194) #28	MKRN2 (ENSACAG00000013310) #27	ENSACAG00000038503	ISY1 (ENSACAG00000013166)	ENSACAG00000013142	ENSACAG00000013126	ENSACAG00000013124	GP9 (ENSACAG00000022777)	ENSACAG00000013121	ENSACAG00000013119	ACAD9 (ENSACAG00000012998)	ENSACAG00000012926 #32	ENSACAG00000045372
Laterata	ANCESTRAL SPECIES	1	ENSGT00940000157444	ENSGT00940000160986	ENSGT00940000157238	ENSGT00390000004860.gb	ENSGT00390000004860.fb	ENSGT00550000074921	ENSGT00940000161461 #10	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839 #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00950000183041.A	ENSGT00390000014109.d	ENSGT00940000164112.a	ENSGT00940000161980	ENSGT00530000064244.a	ENSGT00940000163561	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915 #32	ENSGT00390000009491.d #33	ENSGT00940000156047 #35
Common wall lizard	MODERN SPECIES	10	IARS1 (ENSPMRG00000012391)	ENSPMRG00000012464	ENSPMRG00000012467	ENSPMRG00000012475	ATP2B2 (ENSPMRG00000012496) #10	SLC6A11 (ENSPMRG00000012549) #11	SLC6A1 (ENSPMRG00000012556) #12	ENSPMRG00000012565	HRH1 (ENSPMRG00000012568) #16	ATG7 (ENSPMRG00000012572) #17	VGLL4 (ENSPMRG00000012585) #19	TAMM41 (ENSPMRG00000012590)	SYN2 (ENSPMRG00000012608) #20	TIMP4 (ENSPMRG00000012664) #21	ENSPMRG00000012669	PPARG (ENSPMRG00000012674) #22	TSEN2 (ENSPMRG00000012682) #25	MKRN2OS (ENSPMRG00000012689) #26	MKRN2 (ENSPMRG00000012692) #27	RAF1 (ENSPMRG00000012698) #28	ENSPMRG00000012709	ISY1 (ENSPMRG00000012711)	ENSPMRG00000012718	RAB43 (ENSPMRG00000012725)	ENSPMRG00000012727	GP9 (ENSPMRG00000012730)	ENSPMRG00000012736	ENSPMRG00000012740	EFCC1 (ENSPMRG00000012744)	CFAP92 (ENSPMRG00000012752)	ACAD9 (ENSPMRG00000012761)
Argentine black and white tegu	MODERN SPECIES	8	ASPN (ENSSMRG00000014848)	OMD (ENSSMRG00000014849)	OGN (ENSSMRG00000014850)	ENSSMRG00000014853	RPL29 (ENSSMRG00000014854)	IARS1 (ENSSMRG00000014856)	ENSSMRG00000014887 #10	SLC6A11 (ENSSMRG00000019567) #11	SLC6A1 (ENSSMRG00000019568) #12	HRH1 (ENSSMRG00000019569) #16	ATG7 (ENSSMRG00000019571) #17	VGLL4 (ENSSMRG00000019572) #19	TAMM41 (ENSSMRG00000019573)	SYN2 (ENSSMRG00000019575) #20	TIMP4 (ENSSMRG00000019576) #21	PPARG (ENSSMRG00000019578) #22	TSEN2 (ENSSMRG00000019579) #25	MKRN2OS (ENSSMRG00000019580) #26	MKRN2 (ENSSMRG00000019581) #27	RAF1 (ENSSMRG00000019582) #28	ENSSMRG00000019583	ISY1 (ENSSMRG00000019584)	ENSSMRG00000019585	RAB43 (ENSSMRG00000019586)	ENSSMRG00000019587	GP9 (ENSSMRG00000019588)	ENSSMRG00000019589	ENSSMRG00000019590	ACAD9 (ENSSMRG00000019591)	IQSEC1 (ENSSMRG00000019592) #32	NUP210 (ENSSMRG00000019594) #33
tuatara	MODERN SPECIES	1318													TAMM41 (ENSSPUG00000018148)	TIMP4 (ENSSPUG00000018140) #21	SYN2 (ENSSPUG00000018134) #20	PPARG (ENSSPUG00000018117) #22	TSEN2 (ENSSPUG00000018099) #25	MKRN2OS (ENSSPUG00000018090) #26	MKRN2 (ENSSPUG00000018086) #27	RAF1 (ENSSPUG00000018074) #28	ENSSPUG00000018059	ISY1 (ENSSPUG00000018050)	ENSSPUG00000017987	RAB43 (ENSSPUG00000017960)	PREX1 (ENSSPUG00000017929)
Anura	ANCESTRAL SPECIES	319										ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22
Leishan spiny toad	MODERN SPECIES	11	PBRM1 (ENSLLEG00000029303)	ENSLLEG00000029797	GNL3 (ENSLLEG00000029804)	GLT8D1 (ENSLLEG00000029833)	SPCS1 (ENSLLEG00000029853)	ENSLLEG00000029862	NEK4 (ENSLLEG00000029878)	ENSLLEG00000029907	HRH1 (ENSLLEG00000029914) #16	ATG7 (ENSLLEG00000029952) #17	ENSLLEG00000030142	VGLL4 (ENSLLEG00000030150) #19	TAMM41 (ENSLLEG00000030170)	SYN2 (ENSLLEG00000030180) #20	TIMP4 (ENSLLEG00000030192) #21	PPARG (ENSLLEG00000030215) #22	ENSLLEG00000030256	ENSLLEG00000030286	PLXNB1 (ENSLLEG00000030332)	ENSLLEG00000030364	ENSLLEG00000030374	ENSLLEG00000030388	SETD5 (ENSLLEG00000030406)	ENSLLEG00000030451	LHFPL4 (ENSLLEG00000030459)	ENSLLEG00000030476	MTMR14 (ENSLLEG00000019654)	ENSLLEG00000020489	CPNE9 (ENSLLEG00000020517)	ENSLLEG00000020689	BRPF1 (ENSLLEG00000020739)
Frog	MODERN SPECIES	4	ptpdc1 (ENSXETG00000038413)	ENSXETG00000042603	wnt7a (ENSXETG00000042176) #36	ENSXETG00000024197 #11	ENSXETG00000041612	XB5944457 [provisional] (ENSXETG00000012105) #12	ENSXETG00000049123	ENSXETG00000045682	ENSXETG00000045653	uqcrc1 (ENSXETG00000021470)	nisch (ENSXETG00000021467)	ENSXETG00000045029	ENSXETG00000043200	ENSXETG00000042389	ENSXETG00000038805	pparg (ENSXETG00000017422) #22	raf1 (ENSXETG00000020163) #28	mkrn2 (ENSXETG00000043301) #27	mkrn2os (ENSXETG00000041950) #26	ENSXETG00000042890	itih3 (ENSXETG00000006887)	ENSXETG00000046560	nek4 (ENSXETG00000006888)	gnl3 (ENSXETG00000013669)	spcs1 (ENSXETG00000013668)	glt8d1 (ENSXETG00000042897)	ENSXETG00000049370	ENSXETG00000043218	pbrm1 (ENSXETG00000013671)	NT5DC2 (ENSXETG00000047019)	STAB1 (ENSXETG00000044486)
Coelacanth	MODERN SPECIES	1258													ENSLACG00000011638 #20	TIMP4 (ENSLACG00000010983) #21	ENSLACG00000010251 #20	PPARG (ENSLACG00000009212) #22	TSEN2 (ENSLACG00000008466) #25	MKRN2 (ENSLACG00000007834) #27	RAF1 (ENSLACG00000007082) #28	ENSLACG00000006992	cnbpb (ENSLACG00000005327)	ISY1 (ENSLACG00000004490)	zgc:77375 (ENSLACG00000003572)	RAB43 (ENSLACG00000002676)	ENSLACG00000000602
Actinopterygii	ANCESTRAL SPECIES	14	ENSGT00940000157444	ENSGT00940000160986	ENSGT00940000157238	ENSGT00390000011897	ENSGT00390000004860	ENSGT00620000089227	ENSGT00550000074921	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000156062 #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839.a #26	ENSGT01030000235208	ENSGT00390000003839.b #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00950000183041.A	ENSGT00390000014109	ENSGT00940000164112.a	ENSGT00940000161980	ENSGT00390000004199	ENSGT00530000064244.a	ENSGT00940000163561	ENSGT00950000183014.f.b.a.b	ENSGT00390000008330
Neopterygii	ANCESTRAL SPECIES	38	ENSGT00940000160986	ENSGT00940000157238	ENSGT00390000011897	ENSGT00390000004860	ENSGT00620000089227	ENSGT00550000074921	ENSGT00940000166500	ENSGT00940000157569 #11	ENSGT00940000156027 #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B #19	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062 #20	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839.a #26	ENSGT01030000235208	ENSGT00390000003839.b #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00950000183041.A	ENSGT00390000014109	ENSGT00940000164112.a	ENSGT00940000161980	ENSGT00390000004199	ENSGT00530000064244.a	ENSGT00940000163561	ENSGT00950000183014.f.b.a.b	ENSGT00390000008330
Osteoglossocephalai	ANCESTRAL SPECIES	1	ENSGT00940000156030.j	ENSGT00940000157494	ENSGT00940000157262.m.a	ENSGT00390000007084	ENSGT00940000153541.D	ENSGT00550000074921	ENSGT00940000166500	ENSGT00940000157569 #11	ENSGT00940000156027.b #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B.f #19	ENSGT00390000000616	ENSGT00940000156062.m #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839.a #26	ENSGT00390000003839.b #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00950000183041.A.a.b	ENSGT00950000183041.A.a.a	ENSGT00390000014109	ENSGT00940000164112.a	ENSGT00940000161980	ENSGT00390000004199	ENSGT00990000205530	ENSGT00940000157312	ENSGT00940000156915.f.b #32	ENSGT00940000156308 #34
Osteoglossiformes	ANCESTRAL SPECIES	57	ENSGT00940000157494	ENSGT00940000157262.m.a	ENSGT00390000007084	ENSGT00940000153541.D	ENSGT00550000074921	ENSGT00940000166500.k	ENSGT00940000157569 #11	ENSGT00940000156027.b #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B.f #19	ENSGT00390000000616	ENSGT00940000159798.a.b #21	ENSGT00940000156062.m #20	ENSGT00940000159798.b #21	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839.a #26	ENSGT00390000003839.b #26	ENSGT00950000183077.a.b.p #27	ENSGT00940000156084 #28	ENSGT00950000183041.A.a.b	ENSGT00390000014109	ENSGT00940000164112.a	ENSGT00940000161980	ENSGT00390000004199	ENSGT00940000163561	ENSGT00390000008330	ENSGT00940000157312	ENSGT00940000156915.f.b #32	ENSGT00940000156308 #34
P. kingsleyae	MODERN SPECIES	60	POC1A (ENSPKIG00000025072)	dusp7 (ENSPKIG00000025059)	rpl29 (ENSPKIG00000025048)	tnnc1a (ENSPKIG00000025038)	iars1 (ENSPKIG00000025011)	ENSPKIG00000024988	atp2b2 (ENSPKIG00000024938)	SLC6A11 (ENSPKIG00000024908) #11	slc6a1b (ENSPKIG00000024901) #12	HRH1 (ENSPKIG00000024898) #16	ATG7 (ENSPKIG00000024886) #17	vgll4b (ENSPKIG00000024872) #19	tamm41 (ENSPKIG00000024860)	TIMP4 (ENSPKIG00000024854) #21	SYN2 (ENSPKIG00000024841) #20	PPARG (ENSPKIG00000024820) #22	tsen2 (ENSPKIG00000024801) #25	MKRN2OS (ENSPKIG00000024791) #26	ENSPKIG00000024788 #26	MKRN2 (ENSPKIG00000024724) #27	raf1b (ENSPKIG00000024636) #28	cnbpb (ENSPKIG00000024603)	isy1 (ENSPKIG00000024592)	ENSPKIG00000024576	rab43 (ENSPKIG00000024563)	nuf2 (ENSPKIG00000024545)	ENSPKIG00000024532	ENSPKIG00000024519	ENSPKIG00000024509	ENSPKIG00000024498	ENSPKIG00000024490
Asian bonytongue	MODERN SPECIES	14	alas1 (ENSSFOG00015002174)	POC1A (ENSSFOG00015002118)	dusp7 (ENSSFOG00015002096)	rpl29 (ENSSFOG00015027961)	ENSSFOG00015002049	iars1 (ENSSFOG00015001874)	atp2b2 (ENSSFOG00015001733)	SLC6A11 (ENSSFOG00015001655) #11	slc6a1b (ENSSFOG00015001593) #12	HRH1 (ENSSFOG00015001587) #16	ATG7 (ENSSFOG00015001550) #17	vgll4b (ENSSFOG00015027191) #19	tamm41 (ENSSFOG00015001457)	SYN2 (ENSSFOG00015001391) #20	TIMP4 (ENSSFOG00015029651) #21	PPARG (ENSSFOG00015001328) #22	ENSSFOG00015001374	tsen2 (ENSSFOG00015001309) #25	ENSSFOG00015001275	ENSSFOG00015001244	mkrn2 (ENSSFOG00015001191) #27	raf1b (ENSSFOG00015001166) #28	cnbpb (ENSSFOG00015031332)	isy1 (ENSSFOG00015001127)	ENSSFOG00015001099	rab43 (ENSSFOG00015032863)	nuf2 (ENSSFOG00015001011)	ENSSFOG00015000953	ENSSFOG00015000944	acad9 (ENSSFOG00015000925)	IQSEC1 (ENSSFOG00015014615) #32
Clupeocephala	ANCESTRAL SPECIES	347											ENSGT00940000157262.m.b	ENSGT00940000153541.A	ENSGT00940000156027.a #12	ENSGT00390000003282.B.e #19	ENSGT00940000156062.n #20	ENSGT00940000158273 #22	ENSGT00940000156084 #28	ENSGT00950000183041.A.a.b	ENSGT00530000064244.a	ENSGT00940000156915.f.a #32	ENSGT00390000009491.d #33	ENSGT00940000156047.b #35	ENSGT00940000158523.c.a #36	ENSGT00940000162955
Otomorpha	ANCESTRAL SPECIES	29	ENSGT00940000156030.j	ENSGT00940000157494	ENSGT00940000157262.m.a	ENSGT00390000007084	ENSGT00940000153541.D	ENSGT00550000074921	ENSGT00940000166500	ENSGT00940000157569 #11	ENSGT00940000156027.b #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B.f #19	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000167517	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839.a #26	ENSGT00390000003839.b #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00950000183041.A.a.a	ENSGT00390000014109	ENSGT00940000164112.a	ENSGT00940000161980	ENSGT00390000004199
Otophysi	ANCESTRAL SPECIES	247		ENSGT00940000156030.j	ENSGT00940000157494	ENSGT00940000157262.m.a	ENSGT00390000007084	ENSGT00550000074921	ENSGT00940000166500	ENSGT00940000157569 #11	ENSGT00940000156027.b #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B.f #19	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000167517	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839.a #26	ENSGT00390000003839.b #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00950000183041.A.a.a	ENSGT00390000014109	ENSGT00940000164112.a	ENSGT00940000161980	ENSGT00390000004199
Cyprinoidei	ANCESTRAL SPECIES	131	ENSGT00940000157494	ENSGT00940000157262.m.a	ENSGT00390000007084	ENSGT00550000074921	ENSGT00940000166500	ENSGT00940000157569.l #11	ENSGT00940000156027.b #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B.f #19	ENSGT00390000000616	ENSGT00940000156062.m #20	ENSGT00940000159798.g #21	ENSGT00940000159798.h #21	ENSGT00940000167517	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839.a #26	ENSGT00390000003839.b #26	ENSGT00950000183077.a.b #27	ENSGT00390000014109	ENSGT00940000164112.a	ENSGT00940000161980.i.a	ENSGT00390000004199
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	787															ENSGT00940000167517.c	ENSGT00940000158273.a #22	ENSGT00390000003839.a #26	ENSGT00390000003839.b #26	ENSGT00940000156084.s.a #28	ENSGT00950000183041.A.a.b.e.b	ENSGT00390000004199	ENSGT00390000010265.b	ENSGT00940000157804.l
Cyprininae_a	ANCESTRAL SPECIES	535													ENSGT00940000159798.g.a.a #21	ENSGT00940000159798.h.a.a #21	ENSGT00940000167517.c	ENSGT00940000158273.a #22	ENSGT00390000003839.a #26	ENSGT00390000003839.b #26	ENSGT00940000156084.s.a #28	ENSGT00950000183041.A.a.b.e.b	ENSGT00390000004199	ENSGT00940000155224.c.a	ENSGT00390000010265.a	ENSGT00390000010265.b	ENSGT00940000157804.l
Common carp reference	MODERN SPECIES	13	POC1A (ENSCCRG00000072953)	dusp7 (ENSCCRG00000054563)	rpl29 (ENSCCRG00000007746)	iars1 (ENSCCRG00000029865)	atp2b2 (ENSCCRG00000009632)	SLC6A11 (ENSCCRG00000064612) #11	slc6a1b (ENSCCRG00000066274) #12	ATG7 (ENSCCRG00000069201) #17	vgll4b (ENSCCRG00000081211) #19	ENSCCRG00000065400	ENSCCRG00000080358	TIMP4 (ENSCCRG00000058279) #21	ENSCCRG00000075001	ENSCCRG00000054276	TIMP4 (ENSCCRG00000067355) #21	ENSCCRG00000028460 #22	MKRN2OS (ENSCCRG00000080573) #26	ENSCCRG00000030779 #26	ENSCCRG00000021288	ENSCCRG00000048194	ENSCCRG00000059611	ENSCCRG00000018254	ENSCCRG00000058306	ENSCCRG00000041693
Golden-line barbel	MODERN SPECIES	1558												ENSSGRG00000012198	ENSSGRG00000012199 #21	TIMP4 (ENSSGRG00000012200) #21	syn2b (ENSSGRG00000012203)	PPARG (ENSSGRG00000012207) #22	mkrn2 (ENSSGRG00000012290) #27	mkrn2 (ENSSGRG00000012291) #27	raf1b (ENSSGRG00000012292) #28	ENSSGRG00000012293 #28	ENSSGRG00000012294 #28	cnbpb (ENSSGRG00000012295)	isy1 (ENSSGRG00000012296)	RAB43 (ENSSGRG00000012301)
Goldfish	MODERN SPECIES	52	srsf6b (ENSCARG00000062227)	ift52 (ENSCARG00000062189)	mybl2b (ENSCARG00000061994)	ENSCARG00000061968	ENSCARG00000061950	ENSCARG00000061928	LRP1 (ENSCARG00000060823)	atp2b2 (ENSCARG00000054003)	SLC6A11 (ENSCARG00000049911) #11	slc6a1b (ENSCARG00000049707) #12	HRH1 (ENSCARG00000049702) #16	vgll4b (ENSCARG00000049678) #19	ENSCARG00000049673	syn2b (ENSCARG00000049357)	ENSCARG00000049341	ENSCARG00000049249 #22	MKRN2OS (ENSCARG00000049228) #26	ENSCARG00000049212 #26	cnbpb (ENSCARG00000048701)	nuf2 (ENSCARG00000048607)	ENSCARG00000048583	col2a1b (ENSCARG00000048371)	ENSCARG00000048338	myg1 (ENSCARG00000048256)	ENSCARG00000048251	sp1 (ENSCARG00000048237)
Cyprininae	ANCESTRAL SPECIES	504			ENSGT00940000166500.a	ENSGT00940000157569.l.a #11	ENSGT00940000156027.b.a #12	ENSGT00940000160690 #16	ENSGT00390000017509.b #17	ENSGT00390000003282.B.f.d #19	ENSGT00390000000616	ENSGT00390000017509.a #17	ENSGT00390000003282.B.f.c #19	ENSGT00940000156062.m #20	ENSGT00940000159798.g #21	ENSGT00940000159798.h #21	ENSGT00940000167517.d	ENSGT00940000158273.b #22	ENSGT00390000013266 #25	ENSGT00950000183077.a.b #27	ENSGT00940000156084.s.b #28	ENSGT00950000183041.A.a.b.e.a	ENSGT00390000014109	ENSGT00940000164112.a	ENSGT00940000161980.i.a
Cyprininae_a	ANCESTRAL SPECIES	268	ENSGT00940000156030.j.c.a	ENSGT00940000157494	ENSGT00940000157262.m.a.d	ENSGT00390000007084.l	ENSGT00550000074921.a	ENSGT00940000166500.b	ENSGT00940000157569.k #11	ENSGT00940000160690 #16	ENSGT00390000017509.b #17	ENSGT00390000003282.B.f.d.a #19	ENSGT00390000000616	ENSGT00940000159798.g.b #21	ENSGT00940000159798.h.a.b #21	ENSGT00940000167517.d	ENSGT00940000159798.h.b #21	ENSGT00940000158273.b #22	ENSGT00390000013266 #25	ENSGT00950000183077.a.b #27	ENSGT00940000156084.s.b #28	ENSGT00950000183041.A.a.b.e.a	ENSGT00390000014109	ENSGT00940000164112.a	ENSGT00940000161980.i.a
Common carp reference	MODERN SPECIES	42	rpl29 (ENSCCRG00000029869)	iars1 (ENSCCRG00000032926)	atp2b2 (ENSCCRG00000044404)	SLC6A11 (ENSCCRG00000016659) #11	slc6a1b (ENSCCRG00000016189) #12	ENSCCRG00000075579	ENSCCRG00000072366	ENSCCRG00000068512	HRH1 (ENSCCRG00000082749) #16	ATG7 (ENSCCRG00000073737) #17	VGLL4 (ENSCCRG00000039243) #19	tamm41 (ENSCCRG00000036889)	ENSCCRG00000039284	TIMP4 (ENSCCRG00000069980) #21	TIMP4 (ENSCCRG00000060473) #21	PPARG (ENSCCRG00000029641) #22	tsen2 (ENSCCRG00000029639) #25	mkrn2 (ENSCCRG00000029638) #27	raf1b (ENSCCRG00000029621) #28	cnbpb (ENSCCRG00000071758)	isy1 (ENSCCRG00000053267)	zgc:77375 (ENSCCRG00000078156)	rab43 (ENSCCRG00000023130)	znf831 (ENSCCRG00000021373)	pdrg1 (ENSCCRG00000025072)	ENSCCRG00000081475	phactr3b (ENSCCRG00000001436)	acot8 (ENSCCRG00000079671)	srsf6b (ENSCCRG00000073658)	ift52 (ENSCCRG00000038783)	mybl2b (ENSCCRG00000004062)
Golden-line barbel	MODERN SPECIES	919									HRH1 (ENSSGRG00000036658) #16	ATG7 (ENSSGRG00000036655) #17	vgll4b (ENSSGRG00000036647) #19	tamm41 (ENSSGRG00000036638)	TIMP4 (ENSSGRG00000036637) #21	TIMP4 (ENSSGRG00000036636) #21	syn2b (ENSSGRG00000036635)	PPARG (ENSSGRG00000036484) #22	ENSSGRG00000036469	ENSSGRG00000036468 #26	ENSSGRG00000036467	mkrn2 (ENSSGRG00000036465) #27	raf1b (ENSSGRG00000035606) #28	cnbpb (ENSSGRG00000035512)	isy1 (ENSSGRG00000035398)	zgc:77375 (ENSSGRG00000035392)	rab43 (ENSSGRG00000035390)
Goldfish	MODERN SPECIES	29	alas1 (ENSCARG00000021256)	ENSCARG00000021264	ENSCARG00000021281	ENSCARG00000021300	ENSCARG00000021306	ENSCARG00000021318	npffl (ENSCARG00000021332)	SLC11A2 (ENSCARG00000021353)	avil (ENSCARG00000021483)	HRH1 (ENSCARG00000021671) #16	ATG7 (ENSCARG00000021718) #17	vgll4b (ENSCARG00000022145) #19	tamm41 (ENSCARG00000022168)	syn2b (ENSCARG00000022229)	TIMP4 (ENSCARG00000023678) #21	PPARG (ENSCARG00000023697) #22	tsen2 (ENSCARG00000023895) #25	mkrn2 (ENSCARG00000023910) #27	raf1b (ENSCARG00000023947) #28	cnbpb (ENSCARG00000023990)	isy1 (ENSCARG00000024022)	zgc:77375 (ENSCARG00000024081)	rab43 (ENSCARG00000024098)	ENSCARG00000024104	ttll7 (ENSCARG00000024108)	prkacba (ENSCARG00000024140)	samd13 (ENSCARG00000024207)	uox (ENSCARG00000024219)	rpf1 (ENSCARG00000024311)	SPATA1 (ENSCARG00000024838)	ctbs (ENSCARG00000024868)
Characiphysae	ANCESTRAL SPECIES	5	ENSGT00950000183188.A.a.a	ENSGT00940000159517	ENSGT00390000002944	ENSGT00940000166043	ENSGT00550000074921	ENSGT00940000166500	ENSGT00940000157569 #11	ENSGT00940000156027.b #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B.f #19	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062.m #20	ENSGT00940000167517	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839.a #26	ENSGT00390000003839.b #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00950000183041.A.a.a	ENSGT00390000014109	ENSGT00940000164112.a	ENSGT00940000161980	ENSGT00390000004199	ENSGT00940000166256	ENSGT00940000166455	ENSGT00950000182952.C.g.b	ENSGT00390000010053	ENSGT00940000159941
Characiphysae_b	ANCESTRAL SPECIES	8	ENSGT00950000183188.A.a.a	ENSGT00940000159517	ENSGT00390000002944	ENSGT00940000166043	ENSGT00550000074921	ENSGT00940000166500	ENSGT00940000157569 #11	ENSGT00940000156027.b #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B.f #19	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000156062.m #20	ENSGT00940000167517	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839.a #26	ENSGT00390000003839.b #26	ENSGT00950000183077.a.b #27	ENSGT00950000183041.A.a.a	ENSGT00390000014109	ENSGT00940000164112.a	ENSGT00940000161980	ENSGT00390000004199	ENSGT00940000166256	ENSGT00940000166455	ENSGT00950000182952.C.g.b	ENSGT00390000010053	ENSGT00940000159941	ENSGT00940000157444
Electric eel	MODERN SPECIES	753											vgll4b (ENSEEEG00000014673) #19	tamm41 (ENSEEEG00000014672)	timp4.3 (ENSEEEG00000014670) #21	SYN2 (ENSEEEG00000014669) #20	ENSEEEG00000014668	PPARG (ENSEEEG00000014631) #22	tsen2 (ENSEEEG00000014628) #25	MKRN2OS (ENSEEEG00000014625) #26	mkrn2 (ENSEEEG00000014624) #27
Characoidei	ANCESTRAL SPECIES	38	ENSGT00390000017509 #17	ENSGT00940000160690 #16	ENSGT00940000156027.b #12	ENSGT00940000157569 #11	ENSGT00940000166500	ENSGT00550000074921	ENSGT00940000166043	ENSGT00390000002944	ENSGT00940000159517	ENSGT00950000183188.A.a.a	ENSGT00940000158593.a	ENSGT00390000016940.c.a.b	ENSGT00390000015124	ENSGT00940000159798 #21	ENSGT00940000167517	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839.a #26	ENSGT00390000003839.b #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00950000183041.A.a.a	ENSGT00390000014109	ENSGT00940000164112.a	ENSGT00940000161980	ENSGT00390000004199	ENSGT00940000166256	ENSGT00940000166455	ENSGT00950000182952.C.g.b	ENSGT00390000010053	ENSGT01030000235189
Mexicana tetra	DUPLICATION
Mexicana tetra	MODERN SPECIES	14	slc6a1b (ENSAMXG00000030361) #12	ENSAMXG00000036510	SLC6A11 (ENSAMXG00000032111) #11	atp2b2 (ENSAMXG00000000039)	ENSAMXG00000041363	iars1 (ENSAMXG00000036265)	gdf11 (ENSAMXG00000039058)	sarnp (ENSAMXG00000004834)	cdk2 (ENSAMXG00000030741)	pmela (ENSAMXG00000006095)	MMP19 (ENSAMXG00000006031)	ENSAMXG00000036008	timeless (ENSAMXG00000005979)	timp4.3 (ENSAMXG00000042051) #21	syn2b (ENSAMXG00000032883)	PPARG (ENSAMXG00000043041) #22	tsen2 (ENSAMXG00000043484) #25	MKRN2OS (ENSAMXG00000005712) #26	ENSAMXG00000038911 #26	mkrn2 (ENSAMXG00000005535) #27	raf1b (ENSAMXG00000005440) #28	ENSAMXG00000005433	isy1 (ENSAMXG00000005423)	zgc:77375 (ENSAMXG00000029468)	rab43 (ENSAMXG00000032172)	nuf2 (ENSAMXG00000005348)	shisa10.1 (ENSAMXG00000039145)	atrip (ENSAMXG00000005302)	si:dkey-42i9.4 (ENSAMXG00000005289)	ENSAMXG00000041795	ippk (ENSAMXG00000033401)
Mexicana tetra	MODERN SPECIES	6	ENSAMXG00000031705	hm13 (ENSAMXG00000032438)	ILRUN (ENSAMXG00000032528)	SPDEF (ENSAMXG00000040721)	pacsin1a (ENSAMXG00000036749)	GDI1 (ENSAMXG00000009105)	ENSAMXG00000039739	tafazzin (ENSAMXG00000043118)	atp6ap1a (ENSAMXG00000009113)	ENSAMXG00000035577	slc6a1a (ENSAMXG00000009126) #12	VGLL4 (ENSAMXG00000038300) #19	syn2a (ENSAMXG00000001126) #20	ENSAMXG00000043621	ENSAMXG00000041369	ENSAMXG00000043189 #22	raf1a (ENSAMXG00000001055) #28	ENSAMXG00000026018	cnbpa (ENSAMXG00000032363)	IQSEC1 (ENSAMXG00000001027) #32	NUP210 (ENSAMXG00000029488) #33	ENSAMXG00000042741 #35	ENSAMXG00000034327 #35	WNT7A (ENSAMXG00000030245) #36	zgc:171857 (ENSAMXG00000008861)	ENSAMXG00000008851	adtrp1 (ENSAMXG00000029865)	mybl2a (ENSAMXG00000008837)	sgk2a (ENSAMXG00000008828)	L3MBTL1 (ENSAMXG00000030188)	srsf6a (ENSAMXG00000003101)
Red-bellied piranha	DUPLICATION
Red-bellied piranha	MODERN SPECIES	103	ATG7 (ENSPNAG00000008627) #17	HRH1 (ENSPNAG00000001104) #16	slc6a1b (ENSPNAG00000001100) #12	SLC6A11 (ENSPNAG00000008559) #11	atp2b2 (ENSPNAG00000008513)	iars1 (ENSPNAG00000008441)	gdf11 (ENSPNAG00000008415)	sarnp (ENSPNAG00000000975)	cdk2 (ENSPNAG00000008407)	pmela (ENSPNAG00000008382)	MMP19 (ENSPNAG00000000896)	ENSPNAG00000000887	timeless (ENSPNAG00000008298)	syn2b (ENSPNAG00000000793)	timp4.3 (ENSPNAG00000008221) #21	PPARG (ENSPNAG00000008214) #22	tsen2 (ENSPNAG00000008203) #25	MKRN2OS (ENSPNAG00000008194) #26	ENSPNAG00000000758 #26	mkrn2 (ENSPNAG00000008184) #27	raf1b (ENSPNAG00000008167) #28	ENSPNAG00000008143	isy1 (ENSPNAG00000000703)	zgc:77375 (ENSPNAG00000008127)	rab43 (ENSPNAG00000000692)	nuf2 (ENSPNAG00000000683)	shisa10.1 (ENSPNAG00000000671)	atrip (ENSPNAG00000008094)	si:dkey-42i9.4 (ENSPNAG00000008076)	ippk (ENSPNAG00000008073)	cenpp (ENSPNAG00000000629)
Red-bellied piranha	MODERN SPECIES	55						pacsin1a (ENSPNAG00000021909)	GDI1 (ENSPNAG00000021971)	ENSPNAG00000022018	tafazzin (ENSPNAG00000022068)	atp6ap1a (ENSPNAG00000022089)	ENSPNAG00000022099	ENSPNAG00000022129	slc6a1a (ENSPNAG00000022190) #12	VGLL4 (ENSPNAG00000022221) #19	syn2a (ENSPNAG00000022244) #20	ENSPNAG00000022259 #22	raf1a (ENSPNAG00000022396) #28	cnbpa (ENSPNAG00000022431)	ENSPNAG00000022440	IQSEC1 (ENSPNAG00000022682) #32	NUP210 (ENSPNAG00000022954) #33	FBLN2 (ENSPNAG00000022977) #35	WNT7A (ENSPNAG00000022992) #36	zgc:171857 (ENSPNAG00000023008)	ENSPNAG00000023025	ENSPNAG00000023042	sgk2a (ENSPNAG00000023111)	ENSPNAG00000023136	srsf6a (ENSPNAG00000023145)	srsf6a (ENSPNAG00000023179)	arl6ip5b (ENSPNAG00000023197)
Channel catfish	DUPLICATION
Channel catfish	MODERN SPECIES	13	MMP19 (ENSIPUG00000012600)	pmel (ENSIPUG00000012583)	cdk2 (ENSIPUG00000012551)	Sarnp (ENSIPUG00000012503)	gdf11 (ENSIPUG00000012483)	iars (ENSIPUG00000012333)	atp2b2 (ENSIPUG00000012098)	slc6a11 (ENSIPUG00000012021) #11	slc6a1 (ENSIPUG00000011974) #12	hrh1 (ENSIPUG00000011966) #16	atg7 (ENSIPUG00000011898) #17	vgll4 (ENSIPUG00000011872) #19	tamm41 (ENSIPUG00000011765)	timp4 (ENSIPUG00000011732) #21	syn2 (ENSIPUG00000011716)	PPARG (ENSIPUG00000011668) #22	tsen2 (ENSIPUG00000011651) #25	MKRN2OS (ENSIPUG00000011647) #26	ENSIPUG00000011635 #26	mkrn2 (ENSIPUG00000011589) #27	raf1 (ENSIPUG00000011435) #28	ENSIPUG00000011418	Isy1 (ENSIPUG00000011379)	zgc:77375 (ENSIPUG00000011342)	RAB43 (ENSIPUG00000011323)	nuf2 (ENSIPUG00000011256)	shisa5 (ENSIPUG00000011229)	atrip (ENSIPUG00000011138)	si:dkey-42i9.4 (ENSIPUG00000011123)	ippk (ENSIPUG00000011110)	ecm2 (ENSIPUG00000011082)
Channel catfish	MODERN SPECIES	6	HM13 (ENSIPUG00000017475)	ENSIPUG00000017531	GDI1 (ENSIPUG00000017551)	ENSIPUG00000017577	pacsin1a (ENSIPUG00000017587)	ENSIPUG00000017644	SPDEF (ENSIPUG00000017654)	ILRUN (ENSIPUG00000017672)	tafazzin (ENSIPUG00000017688)	ATP6AP1 (ENSIPUG00000017801)	ENSIPUG00000017832	slc6a1a (ENSIPUG00000017842) #12	VGLL4 (ENSIPUG00000017868) #19	Syn2 (ENSIPUG00000017901) #20	ENSIPUG00000017936	ENSIPUG00000017984 #22	RAF1 (ENSIPUG00000018733) #28	cnbpa (ENSIPUG00000018873)	ENSIPUG00000018890	Iqsec1 (ENSIPUG00000018899) #32
Clupeiformes	ANCESTRAL SPECIES	214	ENSGT00940000156030.j	ENSGT00940000157494	ENSGT00940000157262.m.a	ENSGT00390000007084	ENSGT00940000153541.D	ENSGT00550000074921	ENSGT00940000166500	ENSGT00940000157569 #11	ENSGT00940000156027.b #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B.f #19	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000167517	ENSGT00940000158273 #22	ENSGT00390000013266 #25	ENSGT00390000003839.a #26	ENSGT00390000003839.b #26	ENSGT00950000183077.a.b #27	ENSGT00940000156084 #28	ENSGT00950000183041.A.a.a
Denticle herring	MODERN SPECIES	3	ENSDCDG00000034901	dusp7 (ENSDCDG00000034902)	rpl29 (ENSDCDG00000034906)	ENSDCDG00000034913	iars1 (ENSDCDG00000034943)	atp2b2 (ENSDCDG00000034974)	SLC6A11 (ENSDCDG00000035032) #11	slc6a1b (ENSDCDG00000035164) #12	HRH1 (ENSDCDG00000035297) #16	ATG7 (ENSDCDG00000035327) #17	vgll4b (ENSDCDG00000035408) #19	tamm41 (ENSDCDG00000035411)	syn2b (ENSDCDG00000035419)	tamm41 (ENSDCDG00000016077)	timp4.2 (ENSDCDG00000016082) #21	PPARG (ENSDCDG00000016087) #22	tsen2 (ENSDCDG00000016127) #25	MKRN2OS (ENSDCDG00000016136) #26	ENSDCDG00000016138 #26	mkrn2 (ENSDCDG00000016143) #27	raf1b (ENSDCDG00000016216) #28	ENSDCDG00000016645	emc3 (ENSDCDG00000016651)	ENSDCDG00000016718	gpx1a (ENSDCDG00000020953)	ENSDCDG00000020954	fancd2 (ENSDCDG00000020972)	tex264a (ENSDCDG00000021219)	GRM2 (ENSDCDG00000021222)	stk35l (ENSDCDG00000021227)	bin2b (ENSDCDG00000021235)
Atlantic herring	DUPLICATION
Atlantic herring	MODERN SPECIES	21	alas1 (ENSCHAG00000020253)	POC1A (ENSCHAG00000020096)	dusp7 (ENSCHAG00000020030)	rpl29 (ENSCHAG00000020005)	tnnc1a (ENSCHAG00000019978)	iars1 (ENSCHAG00000019757)	atp2b2 (ENSCHAG00000019399)	SLC6A11 (ENSCHAG00000018702) #11	slc6a1b (ENSCHAG00000017782) #12	HRH1 (ENSCHAG00000017743) #16	ATG7 (ENSCHAG00000017457) #17	vgll4b (ENSCHAG00000017431) #19	tamm41 (ENSCHAG00000017413)	timp4.2 (ENSCHAG00000017406) #21	syn2b (ENSCHAG00000015897)	PPARG (ENSCHAG00000015643) #22	tsen2 (ENSCHAG00000015557) #25	MKRN2OS (ENSCHAG00000015545) #26	ENSCHAG00000015536 #26	mkrn2 (ENSCHAG00000015498) #27	raf1b (ENSCHAG00000015158) #28	ENSCHAG00000014985	gng8 (ENSCHAG00000014964)	tmem45b (ENSCHAG00000014956)	emc3 (ENSCHAG00000014853)	ENSCHAG00000010466	ENSCHAG00000010316	fancd2 (ENSCHAG00000009730)	tex264a (ENSCHAG00000009710)	GRM2 (ENSCHAG00000009645)	parp3 (ENSCHAG00000009559)
Atlantic herring	MODERN SPECIES	20	ENSCHAG00000012425	ENSCHAG00000012432	smc1al (ENSCHAG00000012525)	PFKFB1 (ENSCHAG00000016115)	ndnl2 (ENSCHAG00000018210)	ITIH6 (ENSCHAG00000018239)	GDI1 (ENSCHAG00000018356)	ENSCHAG00000018525	tafazzin (ENSCHAG00000018782)	atp6ap1a (ENSCHAG00000018899)	DUSP7 (ENSCHAG00000019003)	ENSCHAG00000019015	slc6a1a (ENSCHAG00000019029) #12	VGLL4 (ENSCHAG00000019262) #19	syn2a (ENSCHAG00000019267) #20	ENSCHAG00000019273 #22	raf1a (ENSCHAG00000019289) #28	cnbpa (ENSCHAG00000019771)	ENSCHAG00000019833	IQSEC1 (ENSCHAG00000019858) #32	FBLN2 (ENSCHAG00000020606) #35	NUP210 (ENSCHAG00000021425) #33	srsf6a (ENSCHAG00000021645)	snx21 (ENSCHAG00000021688)	ENSCHAG00000021696	PIGT (ENSCHAG00000021719)	phactr3a (ENSCHAG00000021830)	ppp1r3da (ENSCHAG00000021849)	ENSCHAG00000021858	ttll9 (ENSCHAG00000021869)	edn3b (ENSCHAG00000021996)
Euteleosteomorpha	ANCESTRAL SPECIES	11	ENSGT00940000159853	ENSGT00940000157379	ENSGT00740000116961	ENSGT00940000155218.A.d	ENSGT00940000161589	ENSGT00940000165182.c	ENSGT00390000005939.a.b.a	ENSGT00940000163813	ENSGT00940000156490.b.a	ENSGT00390000001787	ENSGT00940000157262.m.b	ENSGT00940000153541.A	ENSGT00940000156027.a #12	ENSGT00390000003282.B.e #19	ENSGT00940000156062.n #20	ENSGT00940000158273 #22	ENSGT00940000156084 #28	ENSGT00950000183041.A.a.b	ENSGT00940000164112.a	ENSGT00530000064244.a	ENSGT00940000156915.f.a #32	ENSGT00390000009491.d #33	ENSGT00940000156047.b #35	ENSGT00940000158523.c.a #36	ENSGT00940000162955	ENSGT00940000179763	ENSGT00940000157794	ENSGT00940000161421	ENSGT00730000111286	ENSGT00940000160255	ENSGT00660000097455
Acanthomorphata	ANCESTRAL SPECIES	6	ENSGT00940000161428	ENSGT00940000157494	ENSGT00940000157262.m.a	ENSGT00390000007084	ENSGT00550000074921	ENSGT00940000166500	ENSGT00940000157569 #11	ENSGT00940000156027.b #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B.f #19	ENSGT00390000000616	ENSGT00940000156062.m #20	ENSGT00940000159798 #21	ENSGT00940000167517	ENSGT00940000158273 #22	ENSGT00390000005351	ENSGT00510000046803.a	ENSGT00390000006238	ENSGT00940000158496	ENSGT00940000156971.B.b.b.a	ENSGT00940000177208	ENSGT00940000156971.B.a	ENSGT00940000157867.a.a	ENSGT00390000001231	ENSGT00940000156759.a.b.b	ENSGT00390000014309	ENSGT01090000260431	ENSGT00440000033870.a.b	ENSGT00940000160679	ENSGT00940000153116.A
Euacanthomorphacea	ANCESTRAL SPECIES	1	ENSGT00940000161428	ENSGT00940000157494	ENSGT00940000157262.m.a	ENSGT00390000007084	ENSGT00550000074921	ENSGT00940000166500	ENSGT00940000157569 #11	ENSGT00940000156027.b #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B.f #19	ENSGT00390000000616	ENSGT00940000156062.m #20	ENSGT00940000159798 #21	ENSGT00940000167517	ENSGT00940000158273 #22	ENSGT00390000005351	ENSGT00510000046803.a	ENSGT00390000006238	ENSGT00940000158496	ENSGT00940000156971.B.b.b.a	ENSGT00940000177208	ENSGT00940000156971.B.a	ENSGT00940000157867.a.a	ENSGT00390000001231	ENSGT00940000156759.a.b.b	ENSGT00390000014309	ENSGT01090000260431	ENSGT00440000033870.a.b	ENSGT00940000160679	ENSGT00940000153116.A
Percomorphaceae	ANCESTRAL SPECIES	1	ENSGT00940000161428	ENSGT00940000157494	ENSGT00940000157262.m.a	ENSGT00390000007084	ENSGT00550000074921	ENSGT00940000166500	ENSGT00940000157569 #11	ENSGT00940000156027.b #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B.f #19	ENSGT00390000000616	ENSGT00940000156062.m #20	ENSGT00940000159798 #21	ENSGT00940000167517	ENSGT00940000158273 #22	ENSGT00390000005351	ENSGT00510000046803.a	ENSGT00390000006238	ENSGT00940000158496	ENSGT00940000156971.B.b.b.a	ENSGT00940000177208	ENSGT00940000156971.B.a	ENSGT00940000157867.a.a	ENSGT00390000001231	ENSGT00940000156759.a.b.b	ENSGT00390000014309	ENSGT01090000260431	ENSGT00440000033870.a.b	ENSGT00940000160679	ENSGT00940000153116.A
Percomorphaceae_B	ANCESTRAL SPECIES	3	ENSGT00940000157494	ENSGT00940000157262.m.a	ENSGT00390000007084	ENSGT00550000074921	ENSGT00940000166449	ENSGT00940000166500	ENSGT00940000157569 #11	ENSGT00940000156027.b #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B.f #19	ENSGT00390000000616	ENSGT00940000156062.m #20	ENSGT00940000159798 #21	ENSGT00940000167517	ENSGT00940000158273 #22	ENSGT00390000005351	ENSGT00510000046803.a	ENSGT00390000006238	ENSGT00940000158496	ENSGT00940000156971.B.b.b.a	ENSGT00940000177208	ENSGT00940000156971.B.a	ENSGT00940000157867.a.a	ENSGT00390000001231	ENSGT00940000156759.a.b.b	ENSGT00390000014309	ENSGT01090000260431	ENSGT00440000033870.a.b	ENSGT00940000160679	ENSGT00940000153116.A
Ovalentaria	ANCESTRAL SPECIES	2	ENSGT00940000157494	ENSGT00940000157262.m.a	ENSGT00390000007084	ENSGT00550000074921	ENSGT00940000166449	ENSGT00940000166500	ENSGT00940000157569 #11	ENSGT00940000156027.b #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B.f #19	ENSGT00390000000616	ENSGT00940000156062.m #20	ENSGT00940000159798 #21	ENSGT00940000167517	ENSGT00940000158273 #22	ENSGT00390000005351	ENSGT00510000046803.a	ENSGT00390000006238	ENSGT00940000158496	ENSGT00940000156971.B.b.a.a	ENSGT00940000177208	ENSGT00940000156971.B.a	ENSGT00940000157867.a.a	ENSGT00390000001231	ENSGT00940000156759.a.b.b	ENSGT00390000014309	ENSGT01090000260431	ENSGT00440000033870.a.b	ENSGT00940000160679	ENSGT00940000153116.A
Atherinomorphae	ANCESTRAL SPECIES	2	ENSGT00940000157494	ENSGT00940000157262.m.a	ENSGT00390000007084	ENSGT00550000074921	ENSGT00940000166449	ENSGT00940000166500	ENSGT00940000157569 #11	ENSGT00940000156027.b #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B.f #19	ENSGT00390000000616	ENSGT00940000156062.m #20	ENSGT00940000159798 #21	ENSGT00940000167517	ENSGT00940000158273 #22	ENSGT00390000005351	ENSGT00510000046803.a	ENSGT00390000006238	ENSGT00940000158496	ENSGT00940000156971.B.b.a.a	ENSGT00940000177208	ENSGT00940000156971.B.a	ENSGT00940000157867.a.a	ENSGT00390000001231	ENSGT00940000156759.a.b.b	ENSGT00390000014309	ENSGT00440000033870.a.b	ENSGT00940000160679	ENSGT00940000153116.A	ENSGT00730000112042
Oryzias	ANCESTRAL SPECIES	1	ENSGT00940000161428	ENSGT00940000157494	ENSGT00940000157262.m.a	ENSGT00390000007084	ENSGT00550000074921	ENSGT00940000166449	ENSGT00940000166500	ENSGT00940000157569 #11	ENSGT00940000156027.b #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B.f #19	ENSGT00390000000616	ENSGT00940000167517	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000005351	ENSGT00510000046803.a	ENSGT00390000006238	ENSGT00940000158496	ENSGT00940000156971.B.b.a.a	ENSGT00940000177208	ENSGT00940000156971.B.a	ENSGT00940000157867.a.a	ENSGT00390000001231	ENSGT00940000156759.a.b.b	ENSGT00390000014309	ENSGT00440000033870.a.b	ENSGT00940000160679	ENSGT00950000182914.a.a.b	ENSGT00940000165161
Oryzias_b	ANCESTRAL SPECIES	3	ENSGT00940000157494	ENSGT00940000161428	ENSGT00940000157262.m.a	ENSGT00390000007084	ENSGT00550000074921	ENSGT00940000166449	ENSGT00940000166500	ENSGT00940000157569 #11	ENSGT00940000156027.b #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B.f #19	ENSGT00390000000616	ENSGT00940000167517	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000005351	ENSGT00510000046803.a	ENSGT00390000006238	ENSGT00940000158496	ENSGT00940000156971.B.b.a.a	ENSGT00940000177208	ENSGT00940000156971.B.a	ENSGT00940000157867.a.a	ENSGT00390000001231	ENSGT00940000156759.a.b.b	ENSGT00390000014309	ENSGT00440000033870.a.b	ENSGT00940000160679	ENSGT00950000182914.a.a.b	ENSGT00940000165161
Indian medaka	MODERN SPECIES	8	alas1 (ENSOMEG00000019729)	ENSOMEG00000019743	POC1A (ENSOMEG00000019834)	dusp7 (ENSOMEG00000019870)	rpl29 (ENSOMEG00000019919)	iars1 (ENSOMEG00000020072)	atp2b2 (ENSOMEG00000020468)	SLC6A11 (ENSOMEG00000020583) #11	slc6a1b (ENSOMEG00000020620) #12	HRH1 (ENSOMEG00000000546) #16	ATG7 (ENSOMEG00000020713) #17	vgll4b (ENSOMEG00000020758) #19	tamm41 (ENSOMEG00000020813)	syn2b (ENSOMEG00000020873)	timp4.2 (ENSOMEG00000020898) #21	PPARG (ENSOMEG00000020937) #22	ENSOMEG00000021039	IFFO2 (ENSOMEG00000021078)	MRTO4 (ENSOMEG00000021110)	akr7a3 (ENSOMEG00000021159)	ENSOMEG00000021169	MEGF6 (ENSOMEG00000021205)	KCNAB2 (ENSOMEG00000021353)	park7 (ENSOMEG00000021414)	pax7a (ENSOMEG00000000569)	mrps16 (ENSOMEG00000021490)	errfi1a (ENSOMEG00000021515)	tas1r3 (ENSOMEG00000021529)	slc45a1 (ENSOMEG00000021586)	prxl2b (ENSOMEG00000021608)	MMEL1 (ENSOMEG00000021703)
Javanese ricefish	MODERN SPECIES	19	POC1A (ENSOJAG00000010853)	b9d2 (ENSOJAG00000011002)	dusp7 (ENSOJAG00000011011)	rpl29 (ENSOJAG00000011048)	iars1 (ENSOJAG00000011128)	ENSOJAG00000011331	atp2b2 (ENSOJAG00000011558)	SLC6A11 (ENSOJAG00000012456) #11	slc6a1b (ENSOJAG00000015157) #12	HRH1 (ENSOJAG00000015323) #16	ATG7 (ENSOJAG00000015434) #17	vgll4b (ENSOJAG00000016510) #19	syn2b (ENSOJAG00000016551)	tamm41 (ENSOJAG00000017026)	timp4.2 (ENSOJAG00000017047) #21	PPARG (ENSOJAG00000017061) #22	ENSOJAG00000017221	IFFO2 (ENSOJAG00000017246)	MRTO4 (ENSOJAG00000017254)	akr7a3 (ENSOJAG00000017279)	ENSOJAG00000017290	KCNAB2 (ENSOJAG00000017397)	park7 (ENSOJAG00000017454)	pax7a (ENSOJAG00000017505)	mrps16 (ENSOJAG00000018044)	errfi1a (ENSOJAG00000018098)	tas1r3 (ENSOJAG00000018107)	slc45a1 (ENSOJAG00000018155)	prxl2b (ENSOJAG00000018179)	MMEL1 (ENSOJAG00000018219)	ENSOJAG00000019023
Oryzias_a	ANCESTRAL SPECIES	5	ENSGT00940000156030.j	ENSGT00940000161428	ENSGT00940000157494	ENSGT00940000157262.m.a	ENSGT00390000007084	ENSGT00550000074921	ENSGT00940000166500	ENSGT00940000157569 #11	ENSGT00940000156027.b #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B.f #19	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000167517	ENSGT00940000158273 #22	ENSGT00390000005351	ENSGT00510000046803.a	ENSGT00390000006238	ENSGT00940000158496	ENSGT00940000156971.B.a	ENSGT00940000157867.a.a	ENSGT00390000001231	ENSGT00940000156759.a.b.b	ENSGT00390000014309	ENSGT00440000033870.a.b	ENSGT00940000160679	ENSGT00950000182914.a.a.b	ENSGT00940000165161	ENSGT00940000157799	ENSGT00390000003768
Japanese Medaka HdrR	MODERN SPECIES	19	POC1A (ENSORLG00000004778)	dusp7 (ENSORLG00000004762)	ENSORLG00000028518	rpl29 (ENSORLG00000023610)	iars1 (ENSORLG00000004747)	atp2b2 (ENSORLG00000004673)	SLC6A11 (ENSORLG00000004636) #11	slc6a1b (ENSORLG00000004595) #12	ENSORLG00000026509	HRH1 (ENSORLG00000004554) #16	ATG7 (ENSORLG00000004519) #17	vgll4b (ENSORLG00000004490) #19	tamm41 (ENSORLG00000004476)	TIMP4 (ENSORLG00000026708) #21	syn2b (ENSORLG00000004447)	pparg (ENSORLG00000004432) #22	ENSORLG00000030181	IFFO2 (ENSORLG00000004412)	MRTO4 (ENSORLG00000027922)	akr7a3 (ENSORLG00000004388)	MEGF6 (ENSORLG00000004361)	KCNAB2 (ENSORLG00000004327)	park7 (ENSORLG00000004285)	pax7a (ENSORLG00000004269)	mrps16 (ENSORLG00000022084)	errfi1a (ENSORLG00000022916)	tas1r3 (ENSORLG00000004226)	slc45a1 (ENSORLG00000004200)	prxl2b (ENSORLG00000004174)	MMEL1 (ENSORLG00000004155)	ENSORLG00000030292
Chinese medaka	MODERN SPECIES	855												vgll4b (ENSOSIG00000003343) #19	tamm41 (ENSOSIG00000003347)	syn2b (ENSOSIG00000003432)	timp4.2 (ENSOSIG00000006804) #21	PPARG (ENSOSIG00000006806) #22	ENSOSIG00000006808	IFFO2 (ENSOSIG00000006809)	MRTO4 (ENSOSIG00000006810)	akr7a3 (ENSOSIG00000006811)	KCNAB2 (ENSOSIG00000006813)	park7 (ENSOSIG00000006822)	pax7a (ENSOSIG00000006832)	ENSOSIG00000007377	mrps16 (ENSOSIG00000007378)	errfi1a (ENSOSIG00000007382)	tas1r3 (ENSOSIG00000007383)	slc45a1 (ENSOSIG00000007385)	prxl2b (ENSOSIG00000007388)	MMEL1 (ENSOSIG00000007396)	ENSOSIG00000008459
Cyprinodontiformes	ANCESTRAL SPECIES	2	ENSGT00940000157494	ENSGT00940000157262.m.a	ENSGT00390000007084	ENSGT00550000074921	ENSGT00940000166449	ENSGT00940000166500	ENSGT00940000157569 #11	ENSGT00940000156027.b #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B.f #19	ENSGT00390000000616	ENSGT00940000156062.m #20	ENSGT00940000159798 #21	ENSGT00940000167517	ENSGT00940000158273 #22	ENSGT00390000005351	ENSGT00510000046803.a	ENSGT00390000006238	ENSGT00940000158496	ENSGT00940000177208	ENSGT00940000156971.B.a	ENSGT00940000157867.a.a	ENSGT00390000001231	ENSGT00940000156759.a.b.b	ENSGT00390000014309	ENSGT00440000033870.a.b	ENSGT00940000160679	ENSGT00940000153116.A	ENSGT00730000112042	ENSGT00950000182914.a.a.b
Aplocheiloidei	ANCESTRAL SPECIES	10	ENSGT00940000156030.j	ENSGT00940000161428	ENSGT00940000157494	ENSGT00940000157262.m.a	ENSGT00390000007084	ENSGT00550000074921	ENSGT00940000166500	ENSGT00940000157569 #11	ENSGT00940000156027.b #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B.f #19	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000167517	ENSGT00940000158273 #22	ENSGT00390000005351	ENSGT00510000046803.a	ENSGT00390000006238	ENSGT00940000158496	ENSGT00940000156971.B.a	ENSGT00940000157867.a.a	ENSGT00390000001231	ENSGT00940000156759.a.b.b	ENSGT00390000014309	ENSGT00440000033870.a.b	ENSGT00940000160679	ENSGT00940000153116.A	ENSGT00950000182914.a.a.b	ENSGT00940000165161	ENSGT00940000157799
Mangrove rivulus	MODERN SPECIES	11	alas1 (ENSKMAG00000011370)	POC1A (ENSKMAG00000011337)	dusp7 (ENSKMAG00000011312)	rpl29 (ENSKMAG00000011291)	iars1 (ENSKMAG00000011154)	atp2b2 (ENSKMAG00000010950)	SLC6A11 (ENSKMAG00000010854) #11	slc6a1b (ENSKMAG00000010778) #12	ENSKMAG00000010564	HRH1 (ENSKMAG00000010549) #16	ATG7 (ENSKMAG00000010464) #17	vgll4b (ENSKMAG00000010378) #19	tamm41 (ENSKMAG00000010329)	TIMP4 (ENSKMAG00000010306) #21	syn2b (ENSKMAG00000010283)	PPARG (ENSKMAG00000010240) #22	ENSKMAG00000010190	IFFO2 (ENSKMAG00000010165)	MRTO4 (ENSKMAG00000010148)	akr7a3 (ENSKMAG00000010119)	MEGF6 (ENSKMAG00000010042)	KCNAB2 (ENSKMAG00000009873)	park7 (ENSKMAG00000009828)	pax7a (ENSKMAG00000009789)	mrps16 (ENSKMAG00000009755)	errfi1a (ENSKMAG00000009745)	tas1r3 (ENSKMAG00000009706)	odad1 (ENSKMAG00000009680)	slc45a1 (ENSKMAG00000009639)	prxl2b (ENSKMAG00000009607)	MMEL1 (ENSKMAG00000009454)
Turquoise killifish	MODERN SPECIES	1619	DUSP7 (ENSNFUG00015007134)	rpl29 (ENSNFUG00015007127)	IARS (ENSNFUG00015007060)	ENSNFUG00015007015	ATP2B2 (ENSNFUG00015006830)	SLC6A11 (ENSNFUG00015005507) #11	slc6a1b (ENSNFUG00015005140) #12	ENSNFUG00015005079	HRH1 (ENSNFUG00015005075) #16	ATG7 (ENSNFUG00015005012) #17	VGLL4B (ENSNFUG00015004941) #19	TAMM41 (ENSNFUG00015004916)	ENSNFUG00015004911	Nfu_g_1_021376 (ENSNFUG00015004790)	TIMP4 (ENSNFUG00015004756) #21	PPARG (ENSNFUG00015004713) #22	ENSNFUG00015021202	CABZ01030889.1 (ENSNFUG00015021193)	MRTO4 (ENSNFUG00015021189)	AKR7A3 (ENSNFUG00015021187)	ENSNFUG00015021185	ENSNFUG00015021184	MEGF6 (ENSNFUG00015021014)	ZDHHC12 (ENSNFUG00015021001)	KCNAB2 (ENSNFUG00015020948)	PARK7 (ENSNFUG00015020939)	pax7a (ENSNFUG00015020830)	MRPS16 (ENSNFUG00015020810)	errfi1a (ENSNFUG00015020808)	tas1r3 (ENSNFUG00015020803)	CCDC114 (ENSNFUG00015020794)
Cyprinodontoidei	ANCESTRAL SPECIES	4	ENSGT00940000157262.m.a	ENSGT00940000157330	ENSGT00390000007084	ENSGT00550000074921	ENSGT00940000166449	ENSGT00940000166500	ENSGT00940000157569 #11	ENSGT00940000156027.b #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B.f #19	ENSGT00390000000616	ENSGT00940000156062.m.a #20	ENSGT00940000159798 #21	ENSGT00940000167517	ENSGT00940000158273 #22	ENSGT00390000005351	ENSGT00510000046803.a	ENSGT00390000006238	ENSGT00940000158496	ENSGT00940000177208	ENSGT00940000156971.B.a	ENSGT00940000157867.a.a	ENSGT00390000001231	ENSGT00940000156759.a.b.b	ENSGT00390000014309	ENSGT00440000033870.a.b	ENSGT00940000160679	ENSGT00940000153116.A	ENSGT00730000112042	ENSGT00950000182914.a.a.b
NAME_4	ANCESTRAL SPECIES	14	ENSGT00940000157494	ENSGT00940000157262.m.a	ENSGT00940000157330	ENSGT00390000007084	ENSGT00550000074921	ENSGT00940000166500	ENSGT00940000157569 #11	ENSGT00940000156027.b #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B.f #19	ENSGT00390000000616	ENSGT00940000167517	ENSGT00940000156062.m.a #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000005351	ENSGT00510000046803.a	ENSGT00390000006238	ENSGT00940000158496	ENSGT00940000177208	ENSGT00940000156971.B.a	ENSGT00940000157867.a.a	ENSGT00390000001231	ENSGT00940000156759.a.b.b	ENSGT00390000014309	ENSGT00440000033870.a.b	ENSGT00940000160679	ENSGT00730000112042	ENSGT00950000182914.a.a.b	ENSGT00940000165161
Mummichog	MODERN SPECIES	2466												ENSFHEG00000023226	tamm41 (ENSFHEG00000023211)	SYN2 (ENSFHEG00000023183) #20	TIMP4 (ENSFHEG00000023081) #21	PPARG (ENSFHEG00000023064) #22	ENSFHEG00000022968	IFFO2 (ENSFHEG00000000769)	MRTO4 (ENSFHEG00000022920)	akr7a3 (ENSFHEG00000022889)	MEGF6 (ENSFHEG00000022858)	KCNAB2 (ENSFHEG00000022773)	park7 (ENSFHEG00000022706)	pax7a (ENSFHEG00000022685)	mrps16 (ENSFHEG00000022624)	errfi1a (ENSFHEG00000022614)	tas1r3 (ENSFHEG00000000917)	ENSFHEG00000022565	slc45a1 (ENSFHEG00000022543)	prxl2b (ENSFHEG00000022498)	MMEL1 (ENSFHEG00000022490)
Sheepshead minnow	MODERN SPECIES	298										HRH1 (ENSCVAG00000000934) #16	ATG7 (ENSCVAG00000000322) #17	vgll4b (ENSCVAG00000012518) #19	tamm41 (ENSCVAG00000012482)	syn2b (ENSCVAG00000012435)	timp4.2 (ENSCVAG00000012373) #21	PPARG (ENSCVAG00000012368) #22	ENSCVAG00000012307	IFFO2 (ENSCVAG00000000319)	MRTO4 (ENSCVAG00000012249)	akr7a3 (ENSCVAG00000012220)	ENSCVAG00000012197	MEGF6 (ENSCVAG00000012191)	KCNAB2 (ENSCVAG00000012097)	park7 (ENSCVAG00000012053)	pax7a (ENSCVAG00000012020)	mrps16 (ENSCVAG00000012001)	errfi1a (ENSCVAG00000011982)	ppcs (ENSCVAG00000011977)	utp3 (ENSCVAG00000011971)	WDR19 (ENSCVAG00000011961)	ENSCVAG00000011811
Poeciliinae	ANCESTRAL SPECIES	4	ENSGT00940000157330	ENSGT00390000007084	ENSGT00550000074921	ENSGT00940000166449	ENSGT00940000166500	ENSGT00940000157569 #11	ENSGT00940000156027.b #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B.f #19	ENSGT00390000000616	ENSGT00940000156062.m.b #20	ENSGT00940000167517	ENSGT00940000156062.m.a #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000005351	ENSGT00510000046803.a	ENSGT00390000006238	ENSGT00940000158496	ENSGT00940000156971.B.a	ENSGT00940000157867.a.a	ENSGT00390000001231	ENSGT00940000156759.a.b.b	ENSGT00390000014309	ENSGT00440000033870.a.b	ENSGT00940000160679	ENSGT00940000153116.A	ENSGT00730000112042	ENSGT00950000182914.a.a.b	ENSGT00940000165161
Platyfish	MODERN SPECIES	12	alas1 (ENSXMAG00000017638)	POC1A (ENSXMAG00000017631)	dusp7 (ENSXMAG00000023607)	pacrg (ENSXMAG00000017628)	rpl29 (ENSXMAG00000020948)	iars1 (ENSXMAG00000017562)	atp2b2 (ENSXMAG00000017498)	SLC6A11 (ENSXMAG00000017478) #11	slc6a1b (ENSXMAG00000017454) #12	HRH1 (ENSXMAG00000029743) #16	ATG7 (ENSXMAG00000017429) #17	vgll4b (ENSXMAG00000017420) #19	tamm41 (ENSXMAG00000017407)	syn2b (ENSXMAG00000017351)	timp4.2 (ENSXMAG00000028986) #21	PPARG (ENSXMAG00000017330) #22	ENSXMAG00000017329	IFFO2 (ENSXMAG00000017316)	akr7a3 (ENSXMAG00000022276)	MEGF6 (ENSXMAG00000017270)	KCNAB2 (ENSXMAG00000017253)	park7 (ENSXMAG00000023687)	pax7a (ENSXMAG00000028236)	mrps16 (ENSXMAG00000000052)	errfi1a (ENSXMAG00000000983)	tas1r3 (ENSXMAG00000018681)	odad1 (ENSXMAG00000017234)	slc45a1 (ENSXMAG00000017212)	prxl2b (ENSXMAG00000017197)	MMEL1 (ENSXMAG00000017153)	ENSXMAG00000017150
Poecilia	ANCESTRAL SPECIES	23	ENSGT00940000157262.m.a	ENSGT00940000157330	ENSGT00390000007084	ENSGT00550000074921	ENSGT00940000166449	ENSGT00940000166500.e	ENSGT00940000157569 #11	ENSGT00940000156027.b #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B.f #19	ENSGT00390000000616	ENSGT00940000156062.m.a #20	ENSGT00940000159798 #21	ENSGT00940000167517	ENSGT00940000158273 #22	ENSGT00390000005351	ENSGT00510000046803.a	ENSGT00390000006238	ENSGT00940000158496	ENSGT00940000156971.B.a	ENSGT00940000157867.a.a	ENSGT00390000001231	ENSGT00940000156759.a.b.b	ENSGT00390000014309	ENSGT00440000033870.a.b	ENSGT00940000160679	ENSGT00940000153116.A	ENSGT00730000112042	ENSGT00950000182914.a.a.b	ENSGT00940000165161
Guppy	MODERN SPECIES	457	alas1 (ENSPREG00000007222)	ENSPREG00000007203	POC1A (ENSPREG00000007172)	dusp7 (ENSPREG00000007153)	pacrg (ENSPREG00000007136)	rpl29 (ENSPREG00000007066)	iars1 (ENSPREG00000006938)	atp2b2 (ENSPREG00000006686)	SLC6A11 (ENSPREG00000006585) #11	slc6a1b (ENSPREG00000006538) #12	HRH1 (ENSPREG00000006524) #16	ATG7 (ENSPREG00000006462) #17	tamm41 (ENSPREG00000006421)	TIMP4 (ENSPREG00000006403) #21	syn2b (ENSPREG00000006342)	PPARG (ENSPREG00000006322) #22	ENSPREG00000006290	IFFO2 (ENSPREG00000006274)	MRTO4 (ENSPREG00000006249)	akr7a3 (ENSPREG00000006225)	MEGF6 (ENSPREG00000006025)	KCNAB2 (ENSPREG00000005906)	park7 (ENSPREG00000005864)	pax7a (ENSPREG00000005821)	mrps16 (ENSPREG00000005800)	errfi1a (ENSPREG00000005788)	tas1r3 (ENSPREG00000005769)	odad1 (ENSPREG00000005737)	ENSPREG00000005710	prxl2b (ENSPREG00000005672)	MMEL1 (ENSPREG00000005569)
NAME_6	ANCESTRAL SPECIES	7	ENSGT00940000157330	ENSGT00390000007084	ENSGT00550000074921	ENSGT00940000166449	ENSGT00940000166500.e	ENSGT00940000157569 #11	ENSGT00940000156027.b #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B.f #19	ENSGT00390000000616	ENSGT00940000156062.m.b #20	ENSGT00940000167517	ENSGT00940000156062.m.a #20	ENSGT00940000159798 #21	ENSGT00940000158273 #22	ENSGT00390000005351	ENSGT00510000046803.a	ENSGT00390000006238	ENSGT00940000158496	ENSGT00940000156971.B.a	ENSGT00940000157867.a.a	ENSGT00390000001231	ENSGT00940000156759.a.b.b	ENSGT00390000014309	ENSGT00440000033870.a.b	ENSGT00940000160679	ENSGT00940000153116.A	ENSGT00730000112042	ENSGT00950000182914.a.a.b	ENSGT00940000165161
Amazon molly	MODERN SPECIES	254	b9d2 (ENSPFOG00000020364)	dusp7 (ENSPFOG00000011374)	pacrg (ENSPFOG00000011380)	rpl29 (ENSPFOG00000011385)	iars1 (ENSPFOG00000011883)	ENSPFOG00000021809	atp2b2 (ENSPFOG00000011920)	SLC6A11 (ENSPFOG00000024327) #11	slc6a1b (ENSPFOG00000012353) #12	HRH1 (ENSPFOG00000020365) #16	ATG7 (ENSPFOG00000012633) #17	vgll4b (ENSPFOG00000012835) #19	tamm41 (ENSPFOG00000012866)	syn2b (ENSPFOG00000012942)	timp4.2 (ENSPFOG00000013103) #21	PPARG (ENSPFOG00000013138) #22	ENSPFOG00000013189	IFFO2 (ENSPFOG00000013190)	MRTO4 (ENSPFOG00000013266)	akr7a3 (ENSPFOG00000013295)	MEGF6 (ENSPFOG00000013409)	KCNAB2 (ENSPFOG00000013731)	park7 (ENSPFOG00000013906)	pax7a (ENSPFOG00000013988)	mrps16 (ENSPFOG00000014130)	errfi1a (ENSPFOG00000014132)	tas1r3 (ENSPFOG00000014141)	odad1 (ENSPFOG00000024264)	ENSPFOG00000014192	slc45a1 (ENSPFOG00000014195)	prxl2b (ENSPFOG00000014245)
Sailfin molly	MODERN SPECIES	671											vgll4b (ENSPLAG00000016682) #19	tamm41 (ENSPLAG00000016650)	ENSPLAG00000016614 #20	SYN2 (ENSPLAG00000016597) #20	TIMP4 (ENSPLAG00000016549) #21	PPARG (ENSPLAG00000016446) #22	ENSPLAG00000016418	IFFO2 (ENSPLAG00000016403)	MRTO4 (ENSPLAG00000016285)	akr7a3 (ENSPLAG00000016271)
Ovalentaria_B	ANCESTRAL SPECIES	5	ENSGT00940000157494	ENSGT00940000157262.m.a	ENSGT00390000007084	ENSGT00550000074921	ENSGT00940000166449	ENSGT00940000166500	ENSGT00940000157569 #11	ENSGT00940000156027.b #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B.f #19	ENSGT00390000000616	ENSGT00940000156062.m #20	ENSGT00940000159798 #21	ENSGT00940000167517	ENSGT00940000158273 #22	ENSGT00390000005351	ENSGT00510000046803.a	ENSGT00390000006238	ENSGT00940000158496	ENSGT00940000156971.B.a	ENSGT00940000157867.a.a	ENSGT00390000001231	ENSGT00940000156759.a.b.b	ENSGT00390000014309	ENSGT01090000260431	ENSGT00440000033870.a.b	ENSGT00940000160679	ENSGT00940000153116.A	ENSGT00730000112042	ENSGT00950000182914.a.a.b
Pomacentridae	ANCESTRAL SPECIES	3	ENSGT00940000171855	ENSGT00940000157494	ENSGT00940000157262.m.a	ENSGT00390000007084	ENSGT00550000074921	ENSGT00940000166500	ENSGT00940000157569 #11	ENSGT00940000156027.b #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B.f #19	ENSGT00390000000616	ENSGT00940000156062.m #20	ENSGT00940000159798 #21	ENSGT00940000167517	ENSGT00940000158273 #22	ENSGT00390000005351	ENSGT00510000046803.a	ENSGT00390000006238	ENSGT00940000158496	ENSGT00940000156971.B.a	ENSGT00940000157867.a.a	ENSGT00390000001231	ENSGT00940000156759.a.b.b	ENSGT00390000014309	ENSGT00440000033870.a.b	ENSGT00940000160679	ENSGT00940000153116.A	ENSGT00730000112042	ENSGT00950000182914.a.a.b	ENSGT00940000165161
Pomacentridae_A	ANCESTRAL SPECIES	38	ENSGT00940000171855	ENSGT00940000157494	ENSGT00940000157262.m.a	ENSGT00390000007084	ENSGT00550000074921	ENSGT00940000166500	ENSGT00940000157569 #11	ENSGT00940000156027.b #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B.f #19	ENSGT00390000000616	ENSGT00940000156062.m #20	ENSGT00940000159798 #21	ENSGT00940000167517	ENSGT00940000158273 #22	ENSGT00390000005351	ENSGT00510000046803.a	ENSGT00390000006238	ENSGT00940000158496	ENSGT00940000156971.B.a	ENSGT00940000157867.a.a	ENSGT00390000001231	ENSGT00940000156759.a.b.b	ENSGT00390000014309	ENSGT00440000033870.a.b	ENSGT00940000160679	ENSGT00940000153116.A	ENSGT00730000112042	ENSGT00950000182914.a.a.b	ENSGT00940000165161
Amphiprion	ANCESTRAL SPECIES	57	ENSGT00940000171855	ENSGT00940000157494	ENSGT00940000157262.m.a	ENSGT00390000007084	ENSGT00550000074921	ENSGT00940000166500	ENSGT00940000157569 #11	ENSGT00940000156027.b #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B.f #19	ENSGT00390000000616	ENSGT00940000156062.m #20	ENSGT00940000159798 #21	ENSGT00940000167517	ENSGT00940000158273 #22	ENSGT00390000005351	ENSGT00510000046803.a	ENSGT00390000006238	ENSGT00940000158496	ENSGT00940000156971.B.a	ENSGT00940000157867.a.a	ENSGT00390000001231	ENSGT00940000156759.a.b.b	ENSGT00390000014309	ENSGT00440000033870.a.b	ENSGT00940000160679	ENSGT00940000153116.A	ENSGT00730000112042	ENSGT00950000182914.a.a.b	ENSGT00940000165161
Orange clownfish	MODERN SPECIES	20	alas1 (ENSAPEG00000005844)	POC1A (ENSAPEG00000005795)	dusp7 (ENSAPEG00000005762)	rpl29 (ENSAPEG00000005754)	iars1 (ENSAPEG00000005602)	atp2b2 (ENSAPEG00000005473)	SLC6A11 (ENSAPEG00000005421) #11	slc6a1b (ENSAPEG00000005275) #12	HRH1 (ENSAPEG00000005268) #16	ATG7 (ENSAPEG00000005195) #17	vgll4b (ENSAPEG00000005138) #19	tamm41 (ENSAPEG00000005101)	ENSAPEG00000005080 #20	TIMP4 (ENSAPEG00000005027) #21	syn2b (ENSAPEG00000005000)	PPARG (ENSAPEG00000004953) #22	ENSAPEG00000004909	IFFO2 (ENSAPEG00000004896)	MRTO4 (ENSAPEG00000004866)	akr7a3 (ENSAPEG00000004838)	MEGF6 (ENSAPEG00000004740)	KCNAB2 (ENSAPEG00000004655)	park7 (ENSAPEG00000004618)	pax7a (ENSAPEG00000004586)	mrps16 (ENSAPEG00000004562)	errfi1a (ENSAPEG00000004552)	tas1r3 (ENSAPEG00000004467)	odad1 (ENSAPEG00000004419)	ENSAPEG00000004389	slc45a1 (ENSAPEG00000004354)	prxl2b (ENSAPEG00000004332)
Clown anemonefish	MODERN SPECIES	3619														TIMP4 (ENSAOCG00000022118) #21	syn2b (ENSAOCG00000002127)	PPARG (ENSAOCG00000022233) #22	ENSAOCG00000022275	IFFO2 (ENSAOCG00000022285)	ssbp1 (ENSAOCG00000022296)	creb3l2 (ENSAOCG00000022335)
Spiny chromis	MODERN SPECIES	782												vgll4b (ENSAPOG00000011633) #19	tamm41 (ENSAPOG00000011603)	syn2b (ENSAPOG00000011567)	timp4.2 (ENSAPOG00000011555) #21	PPARG (ENSAPOG00000011538) #22	ENSAPOG00000011492	IFFO2 (ENSAPOG00000000320)	MRTO4 (ENSAPOG00000011387)	akr7a3 (ENSAPOG00000011323)
Bicolor damselfish	MODERN SPECIES	250					SLC6A11 (ENSSPAG00000008343) #11	ENSSPAG00000008328	slc6a1b (ENSSPAG00000008274) #12	HRH1 (ENSSPAG00000008264) #16	ATG7 (ENSSPAG00000008185) #17	ENSSPAG00000008168	vgll4b (ENSSPAG00000008134) #19	tamm41 (ENSSPAG00000008083)	ENSSPAG00000008060 #20	TIMP4 (ENSSPAG00000008044) #21	ENSSPAG00000008032	PPARG (ENSSPAG00000007939) #22	ENSSPAG00000007898	IFFO2 (ENSSPAG00000007854)	MRTO4 (ENSSPAG00000007811)	akr7a3 (ENSSPAG00000007784)	MEGF6 (ENSSPAG00000007700)	KCNAB2 (ENSSPAG00000007628)	park7 (ENSSPAG00000007585)	pax7a (ENSSPAG00000007542)	mrps16 (ENSSPAG00000007520)	errfi1a (ENSSPAG00000007505)	tas1r3 (ENSSPAG00000007481)	odad1 (ENSSPAG00000007383)	slc45a1 (ENSSPAG00000007345)	prxl2b (ENSSPAG00000007331)	MMEL1 (ENSSPAG00000007289)
Cichlidae	ANCESTRAL SPECIES	1	ENSGT00940000161428	ENSGT00940000157494	ENSGT00940000157262.m.a	ENSGT00390000007084	ENSGT00550000074921	ENSGT00940000166449	ENSGT00940000166500	ENSGT00940000157569 #11	ENSGT00940000156027.b #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B.f #19	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000167517	ENSGT00940000158273 #22	ENSGT00390000005351	ENSGT00510000046803.a	ENSGT00390000006238	ENSGT00940000158496	ENSGT00940000156971.B.a	ENSGT00940000157867.a.a	ENSGT00390000001231	ENSGT00940000156759.a.b.b	ENSGT00390000014309	ENSGT01090000260431	ENSGT00440000033870.a.b	ENSGT00940000160679	ENSGT00940000153116.A	ENSGT00730000112042	ENSGT00950000182914.a.a.b
Pseudocrenilabrinae	ANCESTRAL SPECIES	4	ENSGT00940000171855	ENSGT00940000157494	ENSGT00940000157262.m.a	ENSGT00390000007084	ENSGT00550000074921	ENSGT00940000166449	ENSGT00940000166500	ENSGT00940000157569 #11	ENSGT00940000156027.b #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B.f #19	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000167517	ENSGT00940000158273 #22	ENSGT00390000005351	ENSGT00510000046803.a	ENSGT00390000006238	ENSGT00940000158496	ENSGT00940000156971.B.a	ENSGT00940000157867.a.a	ENSGT00390000001231	ENSGT00940000156759.a.b.b	ENSGT00390000014309	ENSGT01090000260431	ENSGT00440000033870.a.b	ENSGT00940000160679.e.b	ENSGT00940000160679.e.a	ENSGT00940000160679.f.a.a	ENSGT00940000160679.f.b
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	2	ENSGT00940000171855	ENSGT00940000157494	ENSGT00940000157262.m.a	ENSGT00390000007084	ENSGT00550000074921	ENSGT00940000166449	ENSGT00940000166500	ENSGT00940000157569 #11	ENSGT00940000156027.b #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B.f #19	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000167517	ENSGT00940000158273 #22	ENSGT00390000005351	ENSGT00510000046803.a	ENSGT00390000006238	ENSGT00940000158496	ENSGT00940000156971.B.a	ENSGT00940000157867.a.a	ENSGT00390000001231	ENSGT00940000156759.a.b.b	ENSGT00390000014309	ENSGT00440000033870.a.b	ENSGT00940000160679.e.b	ENSGT00940000160679.e.a	ENSGT00940000160679.f.a.a	ENSGT00940000160679.f.b	ENSGT00940000160679.f.a.b
Haplochromini	ANCESTRAL SPECIES	1	ENSGT00940000171855	ENSGT00940000157494	ENSGT00940000157262.m.a	ENSGT00390000007084	ENSGT00550000074921	ENSGT00940000166449	ENSGT00940000166500	ENSGT00940000157569 #11	ENSGT00940000156027.b #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B.f #19	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000167517	ENSGT00940000158273 #22	ENSGT00390000005351	ENSGT00510000046803.a	ENSGT00390000006238	ENSGT00940000158496	ENSGT00940000156971.B.a	ENSGT00940000157867.a.a	ENSGT00390000001231	ENSGT00940000156759.a.b.b	ENSGT00390000014309	ENSGT00440000033870.a.b	ENSGT00940000160679.e.b	ENSGT00940000160679.e.a	ENSGT00940000160679.f.a.a	ENSGT00940000160679.f.b	ENSGT00940000160679.f.a.b
Haplochromini_A	ANCESTRAL SPECIES		ENSGT00940000171855	ENSGT00940000157494	ENSGT00940000157262.m.a	ENSGT00390000007084	ENSGT00550000074921	ENSGT00940000166449	ENSGT00940000166500	ENSGT00940000157569 #11	ENSGT00940000156027.b #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B.f #19	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000167517	ENSGT00940000158273 #22	ENSGT00390000005351	ENSGT00510000046803.a	ENSGT00390000006238	ENSGT00940000158496	ENSGT00940000156971.B.a	ENSGT00940000157867.a.a	ENSGT00390000001231	ENSGT00940000156759.a.b.b	ENSGT00390000014309	ENSGT00440000033870.a.b	ENSGT00940000160679.e.b	ENSGT00940000160679.e.a	ENSGT00940000160679.f.a.a	ENSGT00940000160679.f.b	ENSGT00940000160679.f.a.b
Haplochromini_B	ANCESTRAL SPECIES		ENSGT00940000171855	ENSGT00940000157494	ENSGT00940000157262.m.a	ENSGT00390000007084	ENSGT00550000074921	ENSGT00940000166449	ENSGT00940000166500	ENSGT00940000157569 #11	ENSGT00940000156027.b #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B.f #19	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000167517	ENSGT00940000158273 #22	ENSGT00390000005351	ENSGT00510000046803.a	ENSGT00390000006238	ENSGT00940000158496	ENSGT00940000156971.B.a	ENSGT00940000157867.a.a	ENSGT00390000001231	ENSGT00940000156759.a.b.b	ENSGT00390000014309	ENSGT00440000033870.a.b	ENSGT00940000160679.e.b	ENSGT00940000160679.e.a	ENSGT00940000160679.f.a.a	ENSGT00940000160679.f.b	ENSGT00940000160679.f.a.b
Eastern happy	MODERN SPECIES	17	POC1A (ENSACLG00000017869)	dusp7 (ENSACLG00000017839)	rpl29 (ENSACLG00000017820)	ENSACLG00000017814	iars1 (ENSACLG00000017656)	atp2b2 (ENSACLG00000017205)	SLC6A11 (ENSACLG00000017117) #11	slc6a1b (ENSACLG00000017076) #12	ENSACLG00000017062	HRH1 (ENSACLG00000016992) #16	ATG7 (ENSACLG00000016903) #17	vgll4b (ENSACLG00000016877) #19	tamm41 (ENSACLG00000016824)	TIMP4 (ENSACLG00000016807) #21	syn2b (ENSACLG00000016720)	PPARG (ENSACLG00000016700) #22	ENSACLG00000016591	IFFO2 (ENSACLG00000016558)	MRTO4 (ENSACLG00000016523)	akr7a3 (ENSACLG00000016480)	MEGF6 (ENSACLG00000016423)	KCNAB2 (ENSACLG00000016338)	park7 (ENSACLG00000016270)	pax7a (ENSACLG00000016183)	mrps16 (ENSACLG00000016154)	errfi1a (ENSACLG00000016142)	tas1r3 (ENSACLG00000016094)	tas1r3 (ENSACLG00000016029)	tas1r3 (ENSACLG00000015997)	tas1r3 (ENSACLG00000015934)	tas1r3 (ENSACLG00000015886)
Zebra mbuna	MODERN SPECIES	1108	b9d2 (ENSMZEG00005013497)	POC1A (ENSMZEG00005013503)	dusp7 (ENSMZEG00005013514)	rpl29 (ENSMZEG00005013519)	iars1 (ENSMZEG00005013533)	ENSMZEG00005013595	atp2b2 (ENSMZEG00005013627)	SLC6A11 (ENSMZEG00005013719) #11	slc6a1b (ENSMZEG00005013731) #12	HRH1 (ENSMZEG00005013753) #16	ATG7 (ENSMZEG00005013767) #17	vgll4b (ENSMZEG00005013788) #19	tamm41 (ENSMZEG00005013798)	syn2b (ENSMZEG00005013833)	timp4.2 (ENSMZEG00005013868) #21	PPARG (ENSMZEG00005013881) #22	ENSMZEG00005013908	IFFO2 (ENSMZEG00005013923)	MRTO4 (ENSMZEG00005013929)	akr7a3 (ENSMZEG00005013938)	MEGF6 (ENSMZEG00005013946)	KCNAB2 (ENSMZEG00005014009)	park7 (ENSMZEG00005014032)	pax7a (ENSMZEG00005014047)	errfi1a (ENSMZEG00005014065)	tas1r3 (ENSMZEG00005014075)	tas1r3 (ENSMZEG00005014091)	tas1r3 (ENSMZEG00005014098)	tas1r3 (ENSMZEG00005014108)	tas1r3 (ENSMZEG00005014125)	odad1 (ENSMZEG00005014208)
P. nyererei	MODERN SPECIES	307	POC1A (ENSPNYG00000019517)	dusp7 (ENSPNYG00000019492)	rpl29 (ENSPNYG00000019481)	ENSPNYG00000019473	iars1 (ENSPNYG00000019391)	atp2b2 (ENSPNYG00000019319)	SLC6A11 (ENSPNYG00000019290) #11	ENSPNYG00000019268 #12	slc6a1b (ENSPNYG00000019236) #12	HRH1 (ENSPNYG00000019210) #16	ATG7 (ENSPNYG00000019145) #17	vgll4b (ENSPNYG00000019121) #19	tamm41 (ENSPNYG00000019087)	TIMP4 (ENSPNYG00000019073) #21	syn2b (ENSPNYG00000018930)	PPARG (ENSPNYG00000018859) #22	ENSPNYG00000018835	IFFO2 (ENSPNYG00000018727)	MRTO4 (ENSPNYG00000018672)	akr7a3 (ENSPNYG00000018643)	MEGF6 (ENSPNYG00000018562)	KCNAB2 (ENSPNYG00000018518)	park7 (ENSPNYG00000018494)	pax7a (ENSPNYG00000018456)	mrps16 (ENSPNYG00000018439)	errfi1a (ENSPNYG00000018433)	tas1r3 (ENSPNYG00000018411)	tas1r3 (ENSPNYG00000018340)	tas1r3 (ENSPNYG00000018294)	tas1r3 (ENSPNYG00000018252)	odad1 (ENSPNYG00000018133)
Burton s mouthbrooder	MODERN SPECIES	412	sirt4 (ENSHBUG00000010626)	alas1 (ENSHBUG00000010609)	ENSHBUG00000010556	dusp7 (ENSHBUG00000010538)	rpl29 (ENSHBUG00000010519)	iars1 (ENSHBUG00000010503)	atp2b2 (ENSHBUG00000010370)	SLC6A11 (ENSHBUG00000010118) #11	slc6a1b (ENSHBUG00000010057) #12	HRH1 (ENSHBUG00000010014) #16	ATG7 (ENSHBUG00000010001) #17	vgll4b (ENSHBUG00000009908) #19	tamm41 (ENSHBUG00000009852)	syn2b (ENSHBUG00000009804)	timp4.2 (ENSHBUG00000009788) #21	PPARG (ENSHBUG00000009776) #22	ENSHBUG00000009716	IFFO2 (ENSHBUG00000009674)	MRTO4 (ENSHBUG00000009670)
Lyretail cichlid	MODERN SPECIES	294	b9d2 (ENSNBRG00000022171)	POC1A (ENSNBRG00000022135)	dusp7 (ENSNBRG00000022120)	rpl29 (ENSNBRG00000022109)	iars1 (ENSNBRG00000022044)	atp2b2 (ENSNBRG00000021986)	SLC6A11 (ENSNBRG00000021952) #11	ENSNBRG00000021933 #12	slc6a1b (ENSNBRG00000021905) #12	HRH1 (ENSNBRG00000021892) #16	ATG7 (ENSNBRG00000021861) #17	vgll4b (ENSNBRG00000021834) #19	tamm41 (ENSNBRG00000021806)	TIMP4 (ENSNBRG00000021729) #21	syn2b (ENSNBRG00000021585)	PPARG (ENSNBRG00000021527) #22	ENSNBRG00000021508	IFFO2 (ENSNBRG00000021468)	MRTO4 (ENSNBRG00000021435)	akr7a3 (ENSNBRG00000021413)	MEGF6 (ENSNBRG00000021076)	KCNAB2 (ENSNBRG00000020993)	park7 (ENSNBRG00000020970)	pax7a (ENSNBRG00000020934)	mrps16 (ENSNBRG00000020914)	errfi1a (ENSNBRG00000020906)	tas1r3 (ENSNBRG00000020871)	tas1r3 (ENSNBRG00000020836)	tas1r3 (ENSNBRG00000020787)	odad1 (ENSNBRG00000020665)	ENSNBRG00000020643
Nile tilapia	MODERN SPECIES	17	b9d2 (ENSONIG00000020437)	POC1A (ENSONIG00000014378)	dusp7 (ENSONIG00000040849)	rpl29 (ENSONIG00000032609)	iars1 (ENSONIG00000014366)	ENSONIG00000029504	atp2b2 (ENSONIG00000014357)	SLC6A11 (ENSONIG00000014351) #11	slc6a1b (ENSONIG00000014347) #12	HRH1 (ENSONIG00000020434) #16	ATG7 (ENSONIG00000014343) #17	vgll4b (ENSONIG00000014340) #19	tamm41 (ENSONIG00000014338)	TIMP4 (ENSONIG00000014337) #21	syn2b (ENSONIG00000014333)	pparg (ENSONIG00000014331) #22	ENSONIG00000014328	IFFO2 (ENSONIG00000042640)	MRTO4 (ENSONIG00000014318)	ENSONIG00000030996	akr7a3 (ENSONIG00000014316)	MEGF6 (ENSONIG00000014308)	KCNAB2 (ENSONIG00000014302)	park7 (ENSONIG00000014297)	pax7a (ENSONIG00000014283)	mrps16 (ENSONIG00000014282)	ENSONIG00000037675	errfi1a (ENSONIG00000034028)	tas1r3 (ENSONIG00000004033)	tas1r3 (ENSONIG00000004041)	tas1r3 (ENSONIG00000032160)
Midas cichlid	MODERN SPECIES	423	POC1A (ENSACIG00000018288)	dusp7 (ENSACIG00000018327)	rpl29 (ENSACIG00000018340)	iars1 (ENSACIG00000018381)	ENSACIG00000018425	atp2b2 (ENSACIG00000018433)	SLC6A11 (ENSACIG00000018474) #11	ENSACIG00000018503 #12	slc6a1b (ENSACIG00000018512) #12	HRH1 (ENSACIG00000018536) #16	ATG7 (ENSACIG00000018541) #17	vgll4b (ENSACIG00000018575) #19	tamm41 (ENSACIG00000018586)	syn2b (ENSACIG00000018614)	TIMP4 (ENSACIG00000018796) #21	PPARG (ENSACIG00000019010) #22	ENSACIG00000019021	ENSACIG00000019034	ENSACIG00000019041	ENSACIG00000019048	ENSACIG00000019074	ENSACIG00000019089
Percomorphaceae_C	DUPLICATION
Percomorphaceae_C	DUPLICATION
Percomorphaceae_C	DUPLICATION
Percomorphaceae_C	ANCESTRAL SPECIES																	ENSGT00940000158273.k.a.a #22
Percomorphaceae_D	ANCESTRAL SPECIES																	ENSGT00940000158273.k.a.a #22
Carangaria	ANCESTRAL SPECIES	3	ENSGT00940000157262.m.a	ENSGT00390000007084	ENSGT00550000074921	ENSGT00940000166449	ENSGT00940000166500	ENSGT00940000157569 #11	ENSGT00940000156027.b #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B.f #19	ENSGT00390000000616	ENSGT00940000167517	ENSGT00940000159798 #21	ENSGT00940000158273.l #22	ENSGT00940000156062.m #20	ENSGT00940000158273.k.a.a #22	ENSGT00390000005351	ENSGT00510000046803.a	ENSGT00390000006238	ENSGT00940000158496	ENSGT00940000177208	ENSGT00940000156971.B.a	ENSGT00940000157867.a.a	ENSGT00390000001231	ENSGT00940000156759.a.b.b	ENSGT00390000014309	ENSGT01090000260431	ENSGT00440000033870.a.b	ENSGT00940000160679	ENSGT00940000153116.A	ENSGT00940000155762 #24
Carangaria_A	ANCESTRAL SPECIES																	ENSGT00940000158273.k.a.a #22
Seriola	ANCESTRAL SPECIES																	ENSGT00940000158273.k.a.a #22
Yellowtail amberjack	MODERN SPECIES	2882																ENSSLDG00000015904 #22	ENSSLDG00000015857	IFFO2 (ENSSLDG00000015836)	MRTO4 (ENSSLDG00000015813)	akr7a3 (ENSSLDG00000015786)	ENSSLDG00000015756
Pleuronectoidei	ANCESTRAL SPECIES	4	ENSGT00940000157494	ENSGT00940000157262.m.a	ENSGT00390000007084	ENSGT00550000074921	ENSGT00940000166449	ENSGT00940000166500	ENSGT00940000157569 #11	ENSGT00940000156027.b #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B.f #19	ENSGT00390000000616	ENSGT00940000167517	ENSGT00940000159798 #21	ENSGT00940000156062.m #20	ENSGT00940000158273.k.a.a #22	ENSGT00940000158273.l #22	ENSGT00390000005351	ENSGT00510000046803.a	ENSGT00390000006238	ENSGT00940000158496	ENSGT00940000156971.B.a	ENSGT00940000157867.a.a	ENSGT00390000001231	ENSGT00940000156759.a.b.b	ENSGT00390000014309	ENSGT00440000033870.a.b	ENSGT00940000160679	ENSGT00940000153116.A	ENSGT00950000182914.a.a.b	ENSGT00940000165161
Tongue sole	MODERN SPECIES	2	MMEL1 (ENSCSEG00000021667)	prxl2b (ENSCSEG00000021670)	slc45a1 (ENSCSEG00000021666)	odad1 (ENSCSEG00000021665)	tas1r3 (ENSCSEG00000021664)	errfi1a (ENSCSEG00000021663)	mrps16 (ENSCSEG00000021662)	pax7a (ENSCSEG00000021661)	park7 (ENSCSEG00000021660)	ENSCSEG00000021659	KCNAB2 (ENSCSEG00000021655)	tamm41 (ENSCSEG00000021653)	TIMP4 (ENSCSEG00000021649) #21	ENSCSEG00000021648 #20	ENSCSEG00000021647	ENSCSEG00000021646 #22	ENSCSEG00000021642	IFFO2 (ENSCSEG00000021635)	akr7a3 (ENSCSEG00000021632)	MRTO4 (ENSCSEG00000021629)	ENSCSEG00000021627	MEGF6 (ENSCSEG00000021620)	tamm41 (ENSCSEG00000021618)	vgll4b (ENSCSEG00000021615) #19	ATG7 (ENSCSEG00000021612) #17	HRH1 (ENSCSEG00000021610) #16	slc6a1b (ENSCSEG00000021606) #12	SLC6A11 (ENSCSEG00000021604) #11
Eupercaria	ANCESTRAL SPECIES																	ENSGT00940000158273.k.a.a #22
Eupecaria_A	ANCESTRAL SPECIES																	ENSGT00940000158273.k.a.a #22
Ballan wrasse	MODERN SPECIES	3940																ENSLBEG00000022180 #22
Percomorphaceae_C	ANCESTRAL SPECIES																	ENSGT00940000158273.k.a.b #22
Percomorphaceae_D	ANCESTRAL SPECIES																	ENSGT00940000158273.k.a.b #22
Carangaria	ANCESTRAL SPECIES																	ENSGT00940000158273.k.a.b #22
Carangaria_A	ANCESTRAL SPECIES																	ENSGT00940000158273.k.a.b #22
Seriola	ANCESTRAL SPECIES																	ENSGT00940000158273.k.a.b #22
Yellowtail amberjack	MODERN SPECIES	1201																ENSSLDG00000007100 #22
Percomorphaceae_C	ANCESTRAL SPECIES																	ENSGT00940000158273.k.b #22
Percomorphaceae_D	ANCESTRAL SPECIES																	ENSGT00940000158273.k.b #22
Carangaria	ANCESTRAL SPECIES																	ENSGT00940000158273.k.b #22
Carangaria_A	ANCESTRAL SPECIES	7	ENSGT00940000174536	ENSGT00940000161428	ENSGT00940000157494	ENSGT00940000157262.m.a	ENSGT00390000007084	ENSGT00550000074921	ENSGT00940000166449	ENSGT00940000166500	ENSGT00940000157569 #11	ENSGT00940000156027.b #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B.f #19	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000158273.k.b #22	ENSGT00940000167517	ENSGT00940000158273.l #22	ENSGT00390000005351	ENSGT00510000046803.a	ENSGT00390000006238	ENSGT00940000158496	ENSGT00940000177208	ENSGT00940000156971.B.a	ENSGT00940000157867.a.a	ENSGT00390000001231	ENSGT00940000181610	ENSGT00940000156759.a.b.b	ENSGT00390000014309	ENSGT01090000260431	ENSGT00440000033870.a.b
Seriola	ANCESTRAL SPECIES	20	ENSGT00940000161232	ENSGT00390000015021	ENSGT00940000159891	ENSGT00940000157494	ENSGT00940000157262.m.a	ENSGT00390000007084.o	ENSGT00550000074921	ENSGT00940000166500	ENSGT00940000157569 #11	ENSGT00940000156027.b #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B.f #19	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000158273.k.b #22	ENSGT00940000167517	ENSGT00940000158273.l #22	ENSGT00390000005351	ENSGT00510000046803.a	ENSGT00390000006238	ENSGT00940000158496	ENSGT00940000177208	ENSGT00940000156971.B.a	ENSGT00940000157867.a.a	ENSGT00390000001231	ENSGT00940000181610	ENSGT00940000156759.a.b.b	ENSGT00390000014309	ENSGT01090000260431	ENSGT00440000033870.a.b
Yellowtail amberjack	MODERN SPECIES	3138	ENSSLDG00000003761	alas1 (ENSSLDG00000003778)	POC1A (ENSSLDG00000003828)	dusp7 (ENSSLDG00000003903)	rpl29 (ENSSLDG00000003932)	iars1 (ENSSLDG00000003987)	atp2b2 (ENSSLDG00000004231)	SLC6A11 (ENSSLDG00000004331) #11	slc6a1b (ENSSLDG00000004413) #12	HRH1 (ENSSLDG00000004489) #16	ATG7 (ENSSLDG00000004520) #17	vgll4b (ENSSLDG00000004629) #19	tamm41 (ENSSLDG00000004679)	syn2b (ENSSLDG00000004730)	timp4.2 (ENSSLDG00000004804) #21	PPARG (ENSSLDG00000004816) #22
Percomorphaceae_C	ANCESTRAL SPECIES	1	ENSGT00940000157494	ENSGT00940000157262.m.a	ENSGT00390000007084	ENSGT00550000074921	ENSGT00940000166449	ENSGT00940000166500	ENSGT00940000157569 #11	ENSGT00940000156027.b #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B.f #19	ENSGT00390000000616	ENSGT00940000156062.m #20	ENSGT00940000159798 #21	ENSGT00940000167517	ENSGT00940000158273.l #22	ENSGT00390000005351	ENSGT00510000046803.a	ENSGT00390000006238	ENSGT00940000158496	ENSGT00940000156971.B.b.b.a	ENSGT00940000177208	ENSGT00940000156971.B.a	ENSGT00940000157867.a.a	ENSGT00390000001231	ENSGT00940000156759.a.b.b	ENSGT00390000014309	ENSGT01090000260431	ENSGT00440000033870.a.b	ENSGT00940000160679	ENSGT00940000153116.A
Eupercaria	ANCESTRAL SPECIES		ENSGT00940000161428	ENSGT00940000157494	ENSGT00940000157262.m.a	ENSGT00390000007084	ENSGT00550000074921	ENSGT00940000166449	ENSGT00940000166500	ENSGT00940000157569 #11	ENSGT00940000156027.b #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B.f #19	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000167517	ENSGT00940000158273.l #22	ENSGT00390000005351	ENSGT00510000046803.a	ENSGT00390000006238	ENSGT00940000158496	ENSGT00940000156971.B.a	ENSGT00940000157867.a.a	ENSGT00390000001231	ENSGT00940000156759.a.b.b	ENSGT00390000014309	ENSGT00440000033870.a.b	ENSGT00940000160679	ENSGT00940000153116.A	ENSGT00730000112042	ENSGT00950000182914.a.a.b	ENSGT00940000165161
Tetraodontidae	ANCESTRAL SPECIES	1	ENSGT00940000161428.c	ENSGT00940000157494	ENSGT00940000157262.m.a	ENSGT00390000007084	ENSGT00550000074921	ENSGT00940000166449	ENSGT00940000166500	ENSGT00940000157569 #11	ENSGT00940000156027.b #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B.f #19	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000167517	ENSGT00940000158273.l #22	ENSGT00390000005351	ENSGT00510000046803.a	ENSGT00390000006238	ENSGT00940000158496	ENSGT00940000156971.B.a	ENSGT00940000157867.a.a	ENSGT00390000001231	ENSGT00940000156759.a.b.b	ENSGT00390000014309	ENSGT00440000033870.a.b	ENSGT00940000160679	ENSGT00940000153116.A	ENSGT00950000182914.a.a.b	ENSGT00940000165161	ENSGT00940000157799
Fugu	MODERN SPECIES	10	alas1 (ENSTRUG00000008224)	b9d2 (ENSTRUG00000021104)	POC1A (ENSTRUG00000007900)	dusp7 (ENSTRUG00000032652)	rpl29 (ENSTRUG00000026122)	iars1 (ENSTRUG00000007056)	atp2b2 (ENSTRUG00000005989)	SLC6A11 (ENSTRUG00000004732) #11	slc6a1b (ENSTRUG00000004090) #12	HRH1 (ENSTRUG00000030936) #16	ATG7 (ENSTRUG00000003240) #17	vgll4b (ENSTRUG00000002884) #19	tamm41 (ENSTRUG00000002553)	TIMP4 (ENSTRUG00000023421) #21	syn2b (ENSTRUG00000015588)	pparg (ENSTRUG00000015522) #22	ENSTRUG00000033023	IFFO2 (ENSTRUG00000015469)	MRTO4 (ENSTRUG00000019838)	akr7a3 (ENSTRUG00000024464)	ENSTRUG00000015360	KCNAB2 (ENSTRUG00000021054)	park7 (ENSTRUG00000023725)	pax7a (ENSTRUG00000015245)	mrps16 (ENSTRUG00000021325)	errfi1a (ENSTRUG00000022989)	tas1r3 (ENSTRUG00000023560)	tas1r3 (ENSTRUG00000015073)	odad1 (ENSTRUG00000015028)	prxl2b (ENSTRUG00000023736)	MMEL1 (ENSTRUG00000014807)
Tetraodon	MODERN SPECIES	2	alas1 (ENSTNIG00000014820)	b9d2 (ENSTNIG00000014819)	POC1A (ENSTNIG00000014818)	dusp7 (ENSTNIG00000014817)	rpl29 (ENSTNIG00000014816)	iars1 (ENSTNIG00000014814)	ENSTNIG00000014815	atp2b2 (ENSTNIG00000014813)	SLC6A11 (ENSTNIG00000014812) #11	vgll4b (ENSTNIG00000014811) #19	tamm41 (ENSTNIG00000014810)	syn2b (ENSTNIG00000014806)	timp4.2 (ENSTNIG00000014809) #21	HRH1 (ENSTNIG00000014808) #16	ATG7 (ENSTNIG00000014807) #17	PPARG (ENSTNIG00000014805) #22	ENSTNIG00000014804	IFFO2 (ENSTNIG00000014803)	ENSTNIG00000001495	MRTO4 (ENSTNIG00000014802)	akr7a3 (ENSTNIG00000014801)	MEGF6 (ENSTNIG00000014800)	KCNAB2 (ENSTNIG00000014799)	park7 (ENSTNIG00000014798)	pax7a (ENSTNIG00000014797)	mrps16 (ENSTNIG00000014796)	errfi1a (ENSTNIG00000014795)	tas1r3 (ENSTNIG00000014794)	ENSTNIG00000014793	slc45a1 (ENSTNIG00000014792)	prxl2b (ENSTNIG00000014791)
Eupecaria_A	ANCESTRAL SPECIES		ENSGT00940000161428	ENSGT00940000157494	ENSGT00940000157262.m.a	ENSGT00390000007084	ENSGT00550000074921	ENSGT00940000166449	ENSGT00940000166500	ENSGT00940000157569 #11	ENSGT00940000156027.b #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B.f #19	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000167517	ENSGT00940000158273.l #22	ENSGT00390000005351	ENSGT00510000046803.a	ENSGT00390000006238	ENSGT00940000158496	ENSGT00940000156971.B.a	ENSGT00940000157867.a.a	ENSGT00390000001231	ENSGT00940000156759.a.b.b	ENSGT00390000014309	ENSGT00440000033870.a.b	ENSGT00940000160679	ENSGT00940000153116.A	ENSGT00730000112042	ENSGT00950000182914.a.a.b	ENSGT00940000165161
Ballan wrasse	MODERN SPECIES	22							atp2b2 (ENSLBEG00000025707)	SLC6A11 (ENSLBEG00000025651) #11	slc6a1b (ENSLBEG00000025571) #12	HRH1 (ENSLBEG00000025538) #16	ATG7 (ENSLBEG00000025469) #17	vgll4b (ENSLBEG00000025402) #19	tamm41 (ENSLBEG00000025341)	TIMP4 (ENSLBEG00000025313) #21	syn2b (ENSLBEG00000025283)	PPARG (ENSLBEG00000025236) #22	DNAI1 (ENSLBEG00000025142)	ENSLBEG00000025082	IFFO2 (ENSLBEG00000025042)	MRTO4 (ENSLBEG00000025010)	akr7a3 (ENSLBEG00000024989)	MEGF6 (ENSLBEG00000024925)	KCNAB2 (ENSLBEG00000024822)	park7 (ENSLBEG00000024779)	pax7a (ENSLBEG00000024704)	mrps16 (ENSLBEG00000024661)	errfi1a (ENSLBEG00000024646)	tas1r3 (ENSLBEG00000024599)	odad1 (ENSLBEG00000024563)	ENSLBEG00000024538	slc45a1 (ENSLBEG00000024493)
Eupecaria_B	ANCESTRAL SPECIES	2	ENSGT00940000161428	ENSGT00940000157494	ENSGT00940000157262.m.a	ENSGT00390000007084	ENSGT00550000074921	ENSGT00940000166449	ENSGT00940000166500	ENSGT00940000157569 #11	ENSGT00940000156027.b #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B.f #19	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000167517	ENSGT00940000158273.l #22	ENSGT00390000005351	ENSGT00510000046803.a	ENSGT00390000006238	ENSGT00940000158496	ENSGT00940000156971.B.a	ENSGT00940000157867.a.a	ENSGT00390000001231	ENSGT00940000156759.a.b.b	ENSGT00390000014309	ENSGT00440000033870.a.b	ENSGT00940000160679	ENSGT00940000153116.A	ENSGT00730000112042	ENSGT00950000182914.a.a.b	ENSGT00940000165161
Eupecaria_C	ANCESTRAL SPECIES		ENSGT00940000161428	ENSGT00940000157494	ENSGT00940000157262.m.a	ENSGT00390000007084	ENSGT00550000074921	ENSGT00940000166449	ENSGT00940000166500	ENSGT00940000157569 #11	ENSGT00940000156027.b #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B.f #19	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000167517	ENSGT00940000158273.l #22	ENSGT00390000005351	ENSGT00510000046803.a	ENSGT00390000006238	ENSGT00940000158496	ENSGT00940000156971.B.a	ENSGT00940000157867.a.a	ENSGT00390000001231	ENSGT00940000156759.a.b.b	ENSGT00390000014309	ENSGT00440000033870.a.b	ENSGT00940000160679	ENSGT00940000153116.A	ENSGT00950000182914.a.a.b	ENSGT00940000165161	ENSGT00940000157799
Eupercaria_incertae_sedis	ANCESTRAL SPECIES		ENSGT00940000161428	ENSGT00940000157494	ENSGT00940000157262.m.a	ENSGT00390000007084	ENSGT00940000166449	ENSGT00550000074921	ENSGT00940000166500	ENSGT00940000157569 #11	ENSGT00940000156027.b #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B.f #19	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000167517	ENSGT00940000158273.l #22	ENSGT00390000005351	ENSGT00510000046803.a	ENSGT00390000006238	ENSGT00940000158496	ENSGT00940000156971.B.a	ENSGT00940000157867.a.a	ENSGT00390000001231	ENSGT00940000156759.a.b.b	ENSGT00390000014309	ENSGT00440000033870.a.b	ENSGT00940000160679	ENSGT00940000153116.A	ENSGT00950000182914.a.a.b	ENSGT00940000165161	ENSGT00940000157799
European seabass	MODERN SPECIES	10	ENSDLAG00005010116	ENSDLAG00005032085	POC1A (ENSDLAG00005010069)	ENSDLAG00005028163	rpl29 (ENSDLAG00005010039)	iars1 (ENSDLAG00005009731)	atp2b2 (ENSDLAG00005009542)	SLC6A11 (ENSDLAG00005008002) #11	slc6a1b (ENSDLAG00005007430) #12	HRH1 (ENSDLAG00005007404) #16	ATG7 (ENSDLAG00005007062) #17	VGLL4 (ENSDLAG00005029870) #19	tamm41 (ENSDLAG00005033686)	TIMP4 (ENSDLAG00005006990) #21	syn2b (ENSDLAG00005006779)	PPARG (ENSDLAG00005006757) #22	ENSDLAG00005006745	ENSDLAG00005006726	ENSDLAG00005006677	akr7a3 (ENSDLAG00005029167)	ENSDLAG00005005839	ENSDLAG00005005669	pax7a (ENSDLAG00005005202)	mrps16 (ENSDLAG00005032994)	errfi1a (ENSDLAG00005005151)	tas1r3 (ENSDLAG00005005140)	odad1 (ENSDLAG00005005088)	slc45a1 (ENSDLAG00005005050)	prxl2b (ENSDLAG00005005033)	ENSDLAG00005002065	ENSDLAG00005001993
Large yellow croaker	MODERN SPECIES	478	POC1A (ENSLCRG00005012359)	dusp7 (ENSLCRG00005012335)	rpl29 (ENSLCRG00005012330)	ENSLCRG00005012313	iars1 (ENSLCRG00005012181)	ENSLCRG00005012159	atp2b2 (ENSLCRG00005012156)	SLC6A11 (ENSLCRG00005006569) #11	slc6a1b (ENSLCRG00005005535) #12	HRH1 (ENSLCRG00005005448) #16	ATG7 (ENSLCRG00005002534) #17	vgll4b (ENSLCRG00005021822) #19	tamm41 (ENSLCRG00005021818)	TIMP4 (ENSLCRG00005021816) #21	syn2b (ENSLCRG00005021799)	PPARG (ENSLCRG00005021791) #22	ENSLCRG00005021789	IFFO2 (ENSLCRG00005021787)	akr7a3 (ENSLCRG00005021783)	MEGF6 (ENSLCRG00005021698)	KCNAB2 (ENSLCRG00005021674)	park7 (ENSLCRG00005021673)	pax7a (ENSLCRG00005021650)	mrps16 (ENSLCRG00005021647)	errfi1a (ENSLCRG00005021646)	tas1r3 (ENSLCRG00005021645)	odad1 (ENSLCRG00005021643)	slc45a1 (ENSLCRG00005021640)	prxl2b (ENSLCRG00005021637)	MMEL1 (ENSLCRG00005020934)	ENSLCRG00005020921
Gilthead seabream	MODERN SPECIES	20	POC1A (ENSSAUG00010004378)	b9d2 (ENSSAUG00010004393)	dusp7 (ENSSAUG00010004396)	rpl29 (ENSSAUG00010004402)	iars1 (ENSSAUG00010004435)	ENSSAUG00010004466	atp2b2 (ENSSAUG00010004579)	SLC6A11 (ENSSAUG00010009115) #11	slc6a1b (ENSSAUG00010013135) #12	HRH1 (ENSSAUG00010013292) #16	ATG7 (ENSSAUG00010013308) #17	vgll4b (ENSSAUG00010013402) #19	tamm41 (ENSSAUG00010013407)	syn2b (ENSSAUG00010013419)	timp4.2 (ENSSAUG00010013473) #21	PPARG (ENSSAUG00010013475) #22	ENSSAUG00010013549	IFFO2 (ENSSAUG00010013550)	MRTO4 (ENSSAUG00010013552)	akr7a3 (ENSSAUG00010013553)	MEGF6 (ENSSAUG00010013563)	KCNAB2 (ENSSAUG00010013581)	park7 (ENSSAUG00010013584)	pax7a (ENSSAUG00010013590)	mrps16 (ENSSAUG00010013676)	errfi1a (ENSSAUG00010013679)	tas1r3 (ENSSAUG00010013681)	odad1 (ENSSAUG00010013717)	slc45a1 (ENSSAUG00010013720)	prxl2b (ENSSAUG00010013722)	MMEL1 (ENSSAUG00010013736)
Perciformes	ANCESTRAL SPECIES		ENSGT00940000161428	ENSGT00940000157494	ENSGT00940000157262.m.a	ENSGT00390000007084	ENSGT00550000074921	ENSGT00940000166449	ENSGT00940000166500	ENSGT00940000157569 #11	ENSGT00940000156027.b #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B.f #19	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000167517	ENSGT00940000158273.l #22	ENSGT00390000005351	ENSGT00510000046803.a	ENSGT00390000006238	ENSGT00940000158496	ENSGT00940000156971.B.a	ENSGT00940000157867.a.a	ENSGT00390000001231	ENSGT00940000156759.a.b.b	ENSGT00390000014309	ENSGT00440000033870.a.b	ENSGT00940000160679	ENSGT00940000153116.A	ENSGT00730000112042	ENSGT00950000182914.a.a.b	ENSGT00940000165161
Perciformes_a	ANCESTRAL SPECIES	5	ENSGT00940000161428	ENSGT00940000157494	ENSGT00940000157262.m.a	ENSGT00390000007084	ENSGT00550000074921	ENSGT00940000166449	ENSGT00940000166500	ENSGT00940000157569 #11	ENSGT00940000156027.b #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B.f #19	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000167517	ENSGT00940000158273.l #22	ENSGT00390000005351	ENSGT00510000046803.a	ENSGT00390000006238	ENSGT00940000158496	ENSGT00940000156971.B.a	ENSGT00940000157867.a.a	ENSGT00390000001231	ENSGT00940000156759.a.b.b	ENSGT00390000014309	ENSGT00440000033870.a.b	ENSGT00940000160679	ENSGT00940000153116.A	ENSGT00950000182914.a.a.b	ENSGT00940000165161	ENSGT00940000157799
Pike perch	MODERN SPECIES	17	b9d2 (ENSSLUG00000016124)	POC1A (ENSSLUG00000016113)	dusp7 (ENSSLUG00000016104)	rpl29 (ENSSLUG00000016099)	iars1 (ENSSLUG00000015971)	ENSSLUG00000015917	atp2b2 (ENSSLUG00000014119)	SLC6A11 (ENSSLUG00000010566) #11	slc6a1b (ENSSLUG00000010281) #12	HRH1 (ENSSLUG00000010251) #16	ATG7 (ENSSLUG00000009644) #17	vgll4b (ENSSLUG00000009596) #19	tamm41 (ENSSLUG00000009590)	TIMP4 (ENSSLUG00000009584) #21	syn2b (ENSSLUG00000009133)	PPARG (ENSSLUG00000008826) #22	ENSSLUG00000008802	IFFO2 (ENSSLUG00000008799)	MRTO4 (ENSSLUG00000008794)	akr7a3 (ENSSLUG00000008768)	MEGF6 (ENSSLUG00000008468)	KCNAB2 (ENSSLUG00000008379)	park7 (ENSSLUG00000008343)	pax7a (ENSSLUG00000007899)	mrps16 (ENSSLUG00000007874)	errfi1a (ENSSLUG00000007869)	tas1r3 (ENSSLUG00000007864)	odad1 (ENSSLUG00000007854)	slc45a1 (ENSSLUG00000007849)	ENSSLUG00000007845	prxl2b (ENSSLUG00000007841)
Channel bull blenny	MODERN SPECIES	19	alas1 (ENSCGOG00000018440)	POC1A (ENSCGOG00000018446)	b9d2 (ENSCGOG00000018458)	rpl29 (ENSCGOG00000018459)	iars1 (ENSCGOG00000018490)	ENSCGOG00000019032	atp2b2 (ENSCGOG00000019211)	SLC6A11 (ENSCGOG00000023105) #11	slc6a1b (ENSCGOG00000023351) #12	HRH1 (ENSCGOG00000023840) #16	ATG7 (ENSCGOG00000023868) #17	vgll4b (ENSCGOG00000024004) #19	tamm41 (ENSCGOG00000024006)	syn2b (ENSCGOG00000024015)	timp4.2 (ENSCGOG00000024098) #21	PPARG (ENSCGOG00000024103) #22	ENSCGOG00000024128	IFFO2 (ENSCGOG00000024129)	MRTO4 (ENSCGOG00000024130)	ENSCGOG00000000079	ENSCGOG00000000094	ENSCGOG00000000111	KCNAB2 (ENSCGOG00000000145)	park7 (ENSCGOG00000000201)	pax7a (ENSCGOG00000000284)	mrps16 (ENSCGOG00000000353)	ENSCGOG00000000357	errfi1a (ENSCGOG00000000360)	tas1r3 (ENSCGOG00000000365)	odad1 (ENSCGOG00000000372)	slc45a1 (ENSCGOG00000000378)
Cottioidei	ANCESTRAL SPECIES		ENSGT00940000166256	ENSGT00940000161428	ENSGT00940000157494	ENSGT00940000157262.m.a	ENSGT00390000007084	ENSGT00550000074921	ENSGT00940000166500	ENSGT00940000157569 #11	ENSGT00940000156027.b #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B.f #19	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000167517	ENSGT00940000158273.l #22	ENSGT00390000005351	ENSGT00510000046803.a	ENSGT00390000006238	ENSGT00940000158496	ENSGT00940000156971.B.a	ENSGT00940000157867.a.a	ENSGT00390000001231	ENSGT00940000156759.a.b.b	ENSGT00390000014309	ENSGT00440000033870.a.b	ENSGT00940000160679	ENSGT00940000153116.A	ENSGT00730000112042	ENSGT00950000182914.a.a.b	ENSGT00940000165161
Lumpfish	MODERN SPECIES	20	alas1 (ENSCLMG00005005069)	b9d2 (ENSCLMG00005005068)	POC1A (ENSCLMG00005005040)	dusp7 (ENSCLMG00005005036)	rpl29 (ENSCLMG00005005034)	iars1 (ENSCLMG00005004860)	atp2b2 (ENSCLMG00005004225)	SLC6A11 (ENSCLMG00005004218) #11	slc6a1b (ENSCLMG00005004216) #12	HRH1 (ENSCLMG00005004214) #16	ATG7 (ENSCLMG00005002271) #17	vgll4b (ENSCLMG00005002259) #19	tamm41 (ENSCLMG00005002257)	TIMP4 (ENSCLMG00005002255) #21	syn2b (ENSCLMG00005002118)	PPARG (ENSCLMG00005002037) #22	ENSCLMG00005002035	IFFO2 (ENSCLMG00005002033)	MRTO4 (ENSCLMG00005002031)	akr7a3 (ENSCLMG00005002026)	MEGF6 (ENSCLMG00005002010)	KCNAB2 (ENSCLMG00005002001)	park7 (ENSCLMG00005002000)	pax7a (ENSCLMG00005001250)	mrps16 (ENSCLMG00005001243)	errfi1a (ENSCLMG00005001241)	tas1r3 (ENSCLMG00005001237)	odad1 (ENSCLMG00005001232)	ENSCLMG00005001229	prxl2b (ENSCLMG00005001227)	MMEL1 (ENSCLMG00005000730)
Stickleback	MODERN SPECIES	281	ENSGACG00000001585	WNK2 (ENSGACG00000001586)	ninj1 (ENSGACG00000001588)	card19 (ENSGACG00000001589)	BICD2 (ENSGACG00000001591)	TKT (ENSGACG00000001593)	cacna1da (ENSGACG00000001597)	parapinopsinb (ENSGACG00000001610)	ENSGACG00000001612	h1m (ENSGACG00000001643)	tmcc1b (ENSGACG00000001644)	qrich1 (ENSGACG00000001649)	rpusd4 (ENSGACG00000001657)	ENSGACG00000001660	twf2b (ENSGACG00000001663)	PPARG (ENSGACG00000001665) #22	ENSGACG00000001667	IFFO2 (ENSGACG00000001670)	MRTO4 (ENSGACG00000001672)	akr7a3 (ENSGACG00000001677)	MEGF6 (ENSGACG00000001683)	KCNAB2 (ENSGACG00000001693)	park7 (ENSGACG00000001699)	pax7a (ENSGACG00000001703)	mrps16 (ENSGACG00000001715)
Percomorphaceae_D	ANCESTRAL SPECIES	3	ENSGT00940000157494	ENSGT00940000157262.m.a	ENSGT00390000007084	ENSGT00550000074921	ENSGT00940000166449	ENSGT00940000166500	ENSGT00940000157569 #11	ENSGT00940000156027.b #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B.f #19	ENSGT00390000000616	ENSGT00940000156062.m #20	ENSGT00940000159798 #21	ENSGT00940000167517	ENSGT00940000158273.l #22	ENSGT00390000005351	ENSGT00510000046803.a	ENSGT00390000006238	ENSGT00940000158496	ENSGT00940000177208	ENSGT00940000156971.B.a	ENSGT00940000157867.a.a	ENSGT00390000001231	ENSGT00940000156759.a.b.b	ENSGT00390000014309	ENSGT01090000260431	ENSGT00440000033870.a.b	ENSGT00940000160679	ENSGT00940000153116.A	ENSGT00940000155762 #24
Carangaria	ANCESTRAL SPECIES	3	ENSGT00940000161428	ENSGT00940000157494	ENSGT00940000157262.m.a	ENSGT00390000007084	ENSGT00550000074921	ENSGT00940000166449	ENSGT00940000166500	ENSGT00940000157569 #11	ENSGT00940000156027.b #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B.f #19	ENSGT00390000000616	ENSGT00940000167517	ENSGT00940000159798 #21	ENSGT00940000158273.l #22	ENSGT00940000156062.m #20	ENSGT00940000158273.k.a.a #22	ENSGT00390000005351	ENSGT00510000046803.a	ENSGT00390000006238	ENSGT00940000158496	ENSGT00940000177208	ENSGT00940000156971.B.a	ENSGT00940000157867.a.a	ENSGT00390000001231	ENSGT00940000156759.a.b.b	ENSGT00390000014309	ENSGT01090000260431	ENSGT00440000033870.a.b	ENSGT00940000160679
Pleuronectoidei	ANCESTRAL SPECIES	4	ENSGT00940000157262.m.a	ENSGT00390000007084	ENSGT00550000074921	ENSGT00940000166449	ENSGT00940000166500	ENSGT00940000157569 #11	ENSGT00940000156027.b #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B.f #19	ENSGT00390000000616	ENSGT00940000167517	ENSGT00940000159798 #21	ENSGT00940000156062.m #20	ENSGT00940000158273.k.a.a #22	ENSGT00940000158273.l #22	ENSGT00390000005351	ENSGT00510000046803.a	ENSGT00390000006238	ENSGT00940000158496	ENSGT00940000156971.B.a	ENSGT00940000157867.a.a	ENSGT00390000001231	ENSGT00940000156759.a.b.b	ENSGT00390000014309	ENSGT00440000033870.a.b	ENSGT00940000160679	ENSGT00940000153116.A	ENSGT00950000182914.a.a.b	ENSGT00940000165161	ENSGT00940000157799
Turbot	MODERN SPECIES	18	POC1A (ENSSMAG00000013505)	ENSSMAG00000013545	DUSP7 (ENSSMAG00000013563)	rpl29 (ENSSMAG00000013571)	iars1 (ENSSMAG00000013630)	ENSSMAG00000013836	atp2b2 (ENSSMAG00000013851)	SLC6A11 (ENSSMAG00000014022) #11	slc6a1b (ENSSMAG00000014059) #12	HRH1 (ENSSMAG00000014111) #16	ATG7 (ENSSMAG00000014121) #17	vgll4b (ENSSMAG00000014225) #19	tamm41 (ENSSMAG00000014248)	ENSSMAG00000014265	timp4.2 (ENSSMAG00000014313) #21	PPARG (ENSSMAG00000014325) #22	ENSSMAG00000014344	ENSSMAG00000014373	ENSSMAG00000037531	akr7a3 (ENSSMAG00000014408)	ENSSMAG00000014434	ENSSMAG00000014528	park7 (ENSSMAG00000014693)	pax7a (ENSSMAG00000014712)	mrps16 (ENSSMAG00000014748)	errfi1a (ENSSMAG00000014777)	tas1r3 (ENSSMAG00000014792)	odad1 (ENSSMAG00000001827)	odad1 (ENSSMAG00000014814)	slc45a1 (ENSSMAG00000014836)	prxl2b (ENSSMAG00000014902)
Carangaria_A	ANCESTRAL SPECIES	7	ENSGT00940000157494	ENSGT00940000157262.m.a	ENSGT00390000007084	ENSGT00550000074921	ENSGT00940000166449	ENSGT00940000166500	ENSGT00940000157569 #11	ENSGT00940000156027.b #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B.f #19	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000158273.k.b #22	ENSGT00940000167517	ENSGT00940000158273.l #22	ENSGT00390000005351	ENSGT00510000046803.a	ENSGT00390000006238	ENSGT00940000158496	ENSGT00940000177208	ENSGT00940000156971.B.a	ENSGT00940000157867.a.a	ENSGT00390000001231	ENSGT00940000181610	ENSGT00940000156759.a.b.b	ENSGT00390000014309	ENSGT01090000260431	ENSGT00440000033870.a.b	ENSGT00940000160679	ENSGT00940000153116.A
Barramundi perch	MODERN SPECIES	369								SLC6A11 (ENSLCAG00010020062) #11	slc6a1b (ENSLCAG00010020137) #12	HRH1 (ENSLCAG00010020193) #16	ATG7 (ENSLCAG00010020224) #17	vgll4b (ENSLCAG00010020467) #19	tamm41 (ENSLCAG00010020470)	syn2b (ENSLCAG00010020501)	timp4.2 (ENSLCAG00010020622) #21	PPARG (ENSLCAG00010020641) #22	ENSLCAG00010020668	IFFO2 (ENSLCAG00010020673)	MRTO4 (ENSLCAG00010020678)	akr7a3 (ENSLCAG00010020702)	MEGF6 (ENSLCAG00010020738)
Seriola	ANCESTRAL SPECIES	20	ENSGT00940000159891	ENSGT00940000157494	ENSGT00940000157262.m.a	ENSGT00390000007084.o	ENSGT00550000074921	ENSGT00940000166500	ENSGT00940000157569 #11	ENSGT00940000156027.b #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B.f #19	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000158273.k.b #22	ENSGT00940000167517	ENSGT00940000158273.l #22	ENSGT00390000005351	ENSGT00510000046803.a	ENSGT00390000006238	ENSGT00940000158496	ENSGT00940000177208	ENSGT00940000156971.B.a	ENSGT00940000157867.a.a	ENSGT00390000001231	ENSGT00940000181610	ENSGT00940000156759.a.b.b	ENSGT00390000014309	ENSGT01090000260431	ENSGT00440000033870.a.b	ENSGT00940000160679	ENSGT00940000153116.A
Greater amberjack	MODERN SPECIES	53	alas1 (ENSSDUG00000016190)	POC1A (ENSSDUG00000016161)	dusp7 (ENSSDUG00000016151)	rpl29 (ENSSDUG00000016140)	iars1 (ENSSDUG00000016007)	atp2b2 (ENSSDUG00000015803)	SLC6A11 (ENSSDUG00000015724) #11	slc6a1b (ENSSDUG00000015693) #12	HRH1 (ENSSDUG00000015689) #16	ENSSDUG00000015682	ATG7 (ENSSDUG00000015627) #17	vgll4b (ENSSDUG00000015594) #19	tamm41 (ENSSDUG00000015552)	TIMP4 (ENSSDUG00000015536) #21	syn2b (ENSSDUG00000015496)	PPARG (ENSSDUG00000015453) #22	ENSSDUG00000015403	IFFO2 (ENSSDUG00000015382)	MRTO4 (ENSSDUG00000015362)	akr7a3 (ENSSDUG00000015346)	ENSSDUG00000015340	MEGF6 (ENSSDUG00000015262)	KCNAB2 (ENSSDUG00000015237)	park7 (ENSSDUG00000015216)	ENSSDUG00000015209	pax7a (ENSSDUG00000015185)	mrps16 (ENSSDUG00000015177)	errfi1a (ENSSDUG00000015171)	tas1r3 (ENSSDUG00000015137)	odad1 (ENSSDUG00000015119)	ENSSDUG00000015112 #24
Anabantaria	ANCESTRAL SPECIES		ENSGT00940000157494	ENSGT00940000157262.m.a	ENSGT00390000007084	ENSGT00550000074921	ENSGT00940000166449	ENSGT00940000166500	ENSGT00940000157569 #11	ENSGT00940000156027.b #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B.f #19	ENSGT00390000000616	ENSGT00940000156062.m #20	ENSGT00940000159798 #21	ENSGT00940000167517	ENSGT00940000158273.l #22	ENSGT00390000005351	ENSGT00510000046803.a	ENSGT00390000006238	ENSGT00940000158496	ENSGT00940000156971.B.a	ENSGT00940000157867.a.a	ENSGT00390000001231	ENSGT00940000156759.a.b.b	ENSGT00390000014309	ENSGT00440000033870.a.b	ENSGT00940000160679	ENSGT00940000153116.A	ENSGT00950000182914.a.a.b	ENSGT00940000165161	ENSGT00940000157799
Zig-zag eel	MODERN SPECIES	19	ENSMAMG00000014207	POC1A (ENSMAMG00000014233)	ENSMAMG00000014261	rpl29 (ENSMAMG00000028053)	iars1 (ENSMAMG00000014297)	ENSMAMG00000027927	atp2b2 (ENSMAMG00000014381)	SLC6A11 (ENSMAMG00000014443) #11	slc6a1b (ENSMAMG00000014523) #12	HRH1 (ENSMAMG00000014567) #16	ATG7 (ENSMAMG00000014581) #17	vgll4b (ENSMAMG00000014618) #19	tamm41 (ENSMAMG00000014669)	SYN2 (ENSMAMG00000014714) #20	TIMP4 (ENSMAMG00000014738) #21	PPARG (ENSMAMG00000014767) #22	ENSMAMG00000026179	ENSMAMG00000014828	ENSMAMG00000027310	akr7a3 (ENSMAMG00000014864)	ENSMAMG00000014927	ENSMAMG00000015088	ENSMAMG00000025138	ENSMAMG00000028278	park7 (ENSMAMG00000015123)	pax7a (ENSMAMG00000015147)	mrps16 (ENSMAMG00000027779)	errfi1a (ENSMAMG00000026641)	tas1r3 (ENSMAMG00000015213)	odad1 (ENSMAMG00000015248)	prxl2b (ENSMAMG00000026427)
Anabantoidei	ANCESTRAL SPECIES	1	ENSGT00940000161428	ENSGT00940000157494	ENSGT00940000157262.m.a	ENSGT00390000007084	ENSGT00940000166449	ENSGT00550000074921	ENSGT00940000166500	ENSGT00940000157569 #11	ENSGT00940000156027.b #12	ENSGT00940000160690 #16	ENSGT00390000017509 #17	ENSGT00390000003282.B.f #19	ENSGT00390000000616	ENSGT00940000159798 #21	ENSGT00940000167517	ENSGT00940000158273.l #22	ENSGT00390000005351	ENSGT00510000046803.a	ENSGT00390000006238	ENSGT00940000158496	ENSGT00940000156971.B.a	ENSGT00940000157867.a.a	ENSGT00390000001231	ENSGT00940000156759.a.b.b	ENSGT00390000014309	ENSGT00440000033870.a.b	ENSGT00940000160679	ENSGT00940000153116.A	ENSGT00950000182914.a.a.b	ENSGT00940000165161	ENSGT00940000157799
Climbing perch	MODERN SPECIES	18	ENSATEG00000024994	POC1A (ENSATEG00000024993)	ENSATEG00000024992	rpl29 (ENSATEG00000029215)	ENSATEG00000028236	iars1 (ENSATEG00000024989)	atp2b2 (ENSATEG00000024988)	SLC6A11 (ENSATEG00000024987) #11	slc6a1b (ENSATEG00000024986) #12	HRH1 (ENSATEG00000024985) #16	ATG7 (ENSATEG00000024984) #17	vgll4b (ENSATEG00000024983) #19	tamm41 (ENSATEG00000024982)	TIMP4 (ENSATEG00000024981) #21	syn2b (ENSATEG00000024980)	PPARG (ENSATEG00000024979) #22	ENSATEG00000030130	ENSATEG00000024977	ENSATEG00000026158	akr7a3 (ENSATEG00000024975)	ENSATEG00000024972	ENSATEG00000024969	park7 (ENSATEG00000024965)	pax7a (ENSATEG00000024963)	mrps16 (ENSATEG00000024962)	errfi1a (ENSATEG00000024961)	tas1r3 (ENSATEG00000024960)	odad1 (ENSATEG00000024959)	ENSATEG00000027374	slc45a1 (ENSATEG00000024956)	prxl2b (ENSATEG00000029545)
Siamese fighting fish	MODERN SPECIES	16	alas1 (ENSBSLG00000021739)	b9d2 (ENSBSLG00000021723)	POC1A (ENSBSLG00000021703)	dusp7 (ENSBSLG00000021634)	rpl29 (ENSBSLG00000021628)	iars1 (ENSBSLG00000021252)	atp2b2 (ENSBSLG00000013700)	SLC6A11 (ENSBSLG00000011956) #11	slc6a1b (ENSBSLG00000010137) #12	HRH1 (ENSBSLG00000010087) #16	ATG7 (ENSBSLG00000009769) #17	vgll4b (ENSBSLG00000009702) #19	tamm41 (ENSBSLG00000009507)	TIMP4 (ENSBSLG00000009486) #21	syn2b (ENSBSLG00000008560)	PPARG (ENSBSLG00000008274) #22	ENSBSLG00000023742	IFFO2 (ENSBSLG00000023738)	MRTO4 (ENSBSLG00000023724)	ENSBSLG00000023713	MEGF6 (ENSBSLG00000023621)	KCNAB2 (ENSBSLG00000023254)	park7 (ENSBSLG00000023208)	pax7a (ENSBSLG00000022924)	mrps16 (ENSBSLG00000022888)	errfi1a (ENSBSLG00000022878)	tas1r3 (ENSBSLG00000022843)	odad1 (ENSBSLG00000022809)	slc45a1 (ENSBSLG00000022738)	prxl2b (ENSBSLG00000022735)	MMEL1 (ENSBSLG00000022036)
Tiger tail seahorse	MODERN SPECIES	418								SLC6A11 (ENSHCOG00000019158) #11	slc6a1b (ENSHCOG00000019206) #12	HRH1 (ENSHCOG00000019217) #16	ENSHCOG00000019227	vgll4b (ENSHCOG00000000510) #19	tamm41 (ENSHCOG00000019317)	TIMP4 (ENSHCOG00000019357) #21	syn2b (ENSHCOG00000019754)	PPARG (ENSHCOG00000019800) #22	ENSHCOG00000019832	IFFO2 (ENSHCOG00000019866)	MRTO4 (ENSHCOG00000019894)	akr7a3 (ENSHCOG00000019922)	MEGF6 (ENSHCOG00000020100)	KCNAB2 (ENSHCOG00000020126)	park7 (ENSHCOG00000020147)	pax7a (ENSHCOG00000020168)	mrps16 (ENSHCOG00000020173)	errfi1a (ENSHCOG00000020185)	tas1r3 (ENSHCOG00000020192)	odad1 (ENSHCOG00000020275)	slc45a1 (ENSHCOG00000020300)	prxl2b (ENSHCOG00000020316)	MMEL1 (ENSHCOG00000000546)
Pinecone sodierfish	MODERN SPECIES	19	ENSMMDG00005022225	APCDD1L (ENSMMDG00005022227)	SRC (ENSMMDG00005022229)	manbal (ENSMMDG00005022232)	ENSMMDG00005022238	cyp24a1 (ENSMMDG00005022246)	ENSMMDG00005022253	slc6a1b (ENSMMDG00005022257) #12	HRH1 (ENSMMDG00005022261) #16	ATG7 (ENSMMDG00005022284) #17	vgll4b (ENSMMDG00005022864) #19	tamm41 (ENSMMDG00005022865)	syn2b (ENSMMDG00005022867)	timp4.2 (ENSMMDG00005022896) #21	ENSMMDG00005022897	PPARG (ENSMMDG00005022902) #22	ENSMMDG00005022928	IFFO2 (ENSMMDG00005022931)	MRTO4 (ENSMMDG00005022932)	akr7a3 (ENSMMDG00005022936)	MEGF6 (ENSMMDG00005022943)	KCNAB2 (ENSMMDG00005022953)	park7 (ENSMMDG00005022956)	pax7a (ENSMMDG00005022963)	mrps16 (ENSMMDG00005000145)	errfi1a (ENSMMDG00005000163)	tas1r3 (ENSMMDG00005000206)	ENSMMDG00005000264	ENSMMDG00005000268	prxl2b (ENSMMDG00005000276)	MMEL1 (ENSMMDG00005000499)
Cod	MODERN SPECIES	4	ENSGMOG00000002430	arl8bb (ENSGMOG00000002416)	ENSGMOG00000002389	bhlhe40 (ENSGMOG00000031170)	ITPR1 (ENSGMOG00000002239)	setmar (ENSGMOG00000034115)	LRRN1 (ENSGMOG00000020177)	HRH1 (ENSGMOG00000034842) #16	ATG7 (ENSGMOG00000010427) #17	vgll4b (ENSGMOG00000010444) #19	ENSGMOG00000010454	ENSGMOG00000023751	tamm41 (ENSGMOG00000010587)	TIMP4 (ENSGMOG00000023986) #21	syn2b (ENSGMOG00000014094)	PPARG (ENSGMOG00000001375) #22	ENSGMOG00000035002	ENSGMOG00000001401	ENSGMOG00000001422	akr7a3 (ENSGMOG00000001441)	ENSGMOG00000001455	ENSGMOG00000001504	park7 (ENSGMOG00000001535)	pax7a (ENSGMOG00000001549)	mrps16 (ENSGMOG00000001558)	errfi1a (ENSGMOG00000024184)	tas1r3 (ENSGMOG00000002052)	odad1 (ENSGMOG00000002027)	slc45a1 (ENSGMOG00000001985)	prxl2b (ENSGMOG00000001974)	ENSGMOG00000001941
Protacanthopterygii	ANCESTRAL SPECIES	37	ENSGT00740000116961	ENSGT00940000155218.A.d	ENSGT00940000161589	ENSGT00940000165182.c	ENSGT00390000005939.a.b.a	ENSGT00940000163813	ENSGT00940000156490.b.a	ENSGT00390000001787	ENSGT00940000166256	ENSGT00940000156030.j	ENSGT00940000157262.m.b	ENSGT00940000153541.A	ENSGT00940000156027.a #12	ENSGT00390000003282.B.e #19	ENSGT00940000156062.n #20	ENSGT00940000158273 #22	ENSGT00940000156084 #28	ENSGT00950000183041.A.a.b	ENSGT00940000164112.a	ENSGT00940000161980	ENSGT00530000064244.a	ENSGT00940000156915.f.a #32	ENSGT00390000009491.d #33	ENSGT00940000156047.b #35	ENSGT00940000158523.c.a #36	ENSGT00940000162955	ENSGT00940000164549.a.a	ENSGT00940000154471.a.b.a.a.b.b	ENSGT00940000159597	ENSGT00940000168452	ENSGT00940000164282.a
Salmoninae	DUPLICATION
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	50	ENSGT00940000160354.j.b	ENSGT00940000159853.c	ENSGT00940000157379.l.a	ENSGT00740000116961.a	ENSGT00940000155218.A.d	ENSGT00940000161589.q	ENSGT00390000005939.a.b.a.a	ENSGT00940000163813.k	ENSGT00940000156490.b.a.c	ENSGT00990000211061	ENSGT00940000157262.m.b.a	ENSGT00940000153541.A.d	ENSGT00940000156027.a.e #12	ENSGT00390000003282.B.e.a #19	ENSGT00940000156062.n.c #20	ENSGT00940000158273.m.a #22	ENSGT00940000156084.a.a #28	ENSGT00950000183041.A.a.b.a	ENSGT00940000164112.a.k.a	ENSGT00530000064244.a	ENSGT00940000156915.f.a.c #32	ENSGT00390000009491.d.o #33	ENSGT00940000156047.b.c #35	ENSGT00940000158523.c.a.d #36	ENSGT00940000162955	ENSGT00940000164549.a.a.c	ENSGT00940000158284.vb.a	ENSGT00940000154471.a.b.a.a.b.b.c	ENSGT00940000159597.c	ENSGT00940000168452.a	ENSGT00940000164282.a.b
Huchen	MODERN SPECIES	40						ENSHHUG00000026764	irf10 (ENSHHUG00000026748)	bmp7b (ENSHHUG00000026697)	ENSHHUG00000026690	ENSHHUG00000026685	DUSP7 (ENSHHUG00000026672)	ENSHHUG00000026660	slc6a1a (ENSHHUG00000026636) #12	VGLL4 (ENSHHUG00000026623) #19	syn2a (ENSHHUG00000026539) #20	ENSHHUG00000026529 #22	RAF1 (ENSHHUG00000026305) #28	cnbpa (ENSHHUG00000026294)	ENSHHUG00000026288	ENSHHUG00000026285	IQSEC1 (ENSHHUG00000026204) #32	NUP210 (ENSHHUG00000026120) #33	FBLN2 (ENSHHUG00000026083) #35	WNT7A (ENSHHUG00000026069) #36	zgc:171857 (ENSHHUG00000026065)	ENSHHUG00000026056	adtrp1 (ENSHHUG00000026055)	BICD2 (ENSHHUG00000025955)	FGD3 (ENSHHUG00000025935)	ENSHHUG00000025934	ENSHHUG00000025931
Salmoninae_a	ANCESTRAL SPECIES	15	ENSGT00940000160354.j.b	ENSGT00940000159853.c	ENSGT00940000157379.l.a	ENSGT00740000116961.a	ENSGT00940000155218.A.d	ENSGT00940000161589.q	ENSGT00390000005939.a.b.a.a	ENSGT00940000163813.k	ENSGT00940000156490.b.a.c	ENSGT00990000211061	ENSGT00940000157262.m.b.a	ENSGT00940000153541.A.d	ENSGT00940000156027.a.e #12	ENSGT00390000003282.B.e.a #19	ENSGT00940000156062.n.c #20	ENSGT00940000158273.m.a #22	ENSGT00940000156084.a.a #28	ENSGT00950000183041.A.a.b.a	ENSGT00940000164112.a.k.a	ENSGT00530000064244.a	ENSGT00940000156915.f.a.c #32	ENSGT00390000009491.d.o #33	ENSGT00940000156047.b.c #35	ENSGT00940000158523.c.a.d #36	ENSGT00940000162955	ENSGT00940000164549.a.a.c	ENSGT00940000158284.vb.a	ENSGT00940000154471.a.b.a.a.b.b.c	ENSGT00940000159597.c	ENSGT00940000168452.a	ENSGT00940000164282.a.b
Oncorhynchus	ANCESTRAL SPECIES	5	ENSGT00940000158073.a.a	ENSGT00390000011620.a.a.b.f.a	ENSGT00940000167759	ENSGT00940000159853.c	ENSGT00940000157379.l.a	ENSGT00940000155218.A.d	ENSGT00940000161589.q	ENSGT00390000005939.a.b.a.a	ENSGT00940000163813.k	ENSGT00940000156490.b.a.c	ENSGT00940000157262.m.b.a	ENSGT00940000153541.A.d	ENSGT00940000156027.a.e #12	ENSGT00390000003282.B.e.a #19	ENSGT00940000156062.n.c #20	ENSGT00940000158273.m.a #22	ENSGT00940000156084.a.a #28	ENSGT00950000183041.A.a.b.a	ENSGT00940000164112.a.k.a	ENSGT00530000064244.a	ENSGT00940000156915.f.a.c #32	ENSGT00390000009491.d.o #33	ENSGT00940000156047.b.c #35	ENSGT00940000158523.c.a.d #36	ENSGT00940000162955	ENSGT00940000164549.a.a.c	ENSGT00940000158284.vb.a	ENSGT00940000154471.a.b.a.a.b.b.c	ENSGT00940000159597.c	ENSGT00940000168452.a	ENSGT00940000164282.a.b
Rainbow trout	MODERN SPECIES	30	ENSOMYG00000038494	ENSOMYG00000038478	ENSOMYG00000056500	SS18L1 (ENSOMYG00000038431)	MTG2 (ENSOMYG00000038412)	ENSOMYG00000038389	ENSOMYG00000038360	ENSOMYG00000038325	ENSOMYG00000038340	ENSOMYG00000065416	ENSOMYG00000038290	ENSOMYG00000038279	slc6a1a (ENSOMYG00000038238) #12	ENSOMYG00000038214 #19	syn2a (ENSOMYG00000037514) #20	ENSOMYG00000037258 #22	ENSOMYG00000037086 #28	cnbpa (ENSOMYG00000037003)	ENSOMYG00000036991	ENSOMYG00000036987	IQSEC1 (ENSOMYG00000060750) #32	NUP210 (ENSOMYG00000036054) #33	FBLN2 (ENSOMYG00000035747) #35	WNT7A (ENSOMYG00000068194) #36	zgc:171857 (ENSOMYG00000035689)	ENSOMYG00000064867	ENSOMYG00000035675	adtrp1 (ENSOMYG00000035665)	ENSOMYG00000062080	ENSOMYG00000074233	ENSOMYG00000034229
Oncorhynchus_a	ANCESTRAL SPECIES	7	ENSGT00940000158073.a.a	ENSGT00390000011620.a.a.b.f.a	ENSGT00940000167759	ENSGT00940000159853.c	ENSGT00740000116961.a	ENSGT00940000155218.A.d	ENSGT00940000161589.q	ENSGT00390000005939.a.b.a.a	ENSGT00940000163813.k	ENSGT00940000156490.b.a.c	ENSGT00940000157262.m.b.a	ENSGT00940000153541.A.d	ENSGT00940000156027.a.e #12	ENSGT00390000003282.B.e.a #19	ENSGT00940000156062.n.c #20	ENSGT00940000158273.m.a #22	ENSGT00940000156084.a.a #28	ENSGT00950000183041.A.a.b.a	ENSGT00940000164112.a.k.a	ENSGT00530000064244.a	ENSGT00940000156915.f.a.c #32	ENSGT00390000009491.d.o #33	ENSGT00940000156047.b.c #35	ENSGT00940000158523.c.a.d #36	ENSGT00940000162955	ENSGT00940000164549.a.a.c	ENSGT00940000158284.vb.a	ENSGT00940000154471.a.b.a.a.b.b.c	ENSGT00940000159597.c	ENSGT00940000168452.a	ENSGT00940000164282.a.b
Chinook salmon	MODERN SPECIES	7	CDH4 (ENSOTSG00005013510)	TAF4 (ENSOTSG00005013381)	PSMA7 (ENSOTSG00005013358)	SS18L1 (ENSOTSG00005013352)	ENSOTSG00005013350	ENSOTSG00005013349	ENSOTSG00005013346	ENSOTSG00005013343	irf10 (ENSOTSG00005013342)	bmp7b (ENSOTSG00005013340)	DUSP7 (ENSOTSG00005013327)	ENSOTSG00005013323	slc6a1a (ENSOTSG00005013270) #12	VGLL4 (ENSOTSG00005013268) #19	syn2a (ENSOTSG00005012320) #20	ENSOTSG00005012312 #22	RAF1 (ENSOTSG00005011868) #28	cnbpa (ENSOTSG00005011857)	ENSOTSG00005011855	ENSOTSG00005011853	IQSEC1 (ENSOTSG00005008047) #32	NUP210 (ENSOTSG00005008035) #33	FBLN2 (ENSOTSG00005007211) #35	WNT7A (ENSOTSG00005007204) #36	zgc:171857 (ENSOTSG00005007203)	ENSOTSG00005007202	adtrp1 (ENSOTSG00005007201)	BICD2 (ENSOTSG00005007187)	ENSOTSG00005007179	ENSOTSG00005007175	ciz1b (ENSOTSG00005007173)
Coho salmon	MODERN SPECIES	8	ENSOKIG00005007723	SS18L1 (ENSOKIG00005007666)	ENSOKIG00005007653	ENSOKIG00005007634	ENSOKIG00005007612	ENSOKIG00005007571	ENSOKIG00005007564	ENSOKIG00005007548	bmp7b (ENSOKIG00005007536)	ENSOKIG00005007514	DUSP7 (ENSOKIG00005007491)	ENSOKIG00005007471	slc6a1a (ENSOKIG00005007368) #12	VGLL4 (ENSOKIG00005007344) #19	syn2a (ENSOKIG00005005639) #20	ENSOKIG00005005496 #22	ENSOKIG00005005487	RAF1 (ENSOKIG00005005365) #28	cnbpa (ENSOKIG00005005323)	ENSOKIG00005005317	ENSOKIG00005005310	IQSEC1 (ENSOKIG00005004481) #32	NUP210 (ENSOKIG00005040185) #33	FBLN2 (ENSOKIG00005039413) #35	WNT7A (ENSOKIG00005039363) #36	zgc:171857 (ENSOKIG00005039294)	ENSOKIG00005039280	adtrp1 (ENSOKIG00005039240)	BICD2 (ENSOKIG00005038449)	FGD3 (ENSOKIG00005038409)	ENSOKIG00005038393
Salmo	ANCESTRAL SPECIES	39	ENSGT00940000160354.j.b	ENSGT00940000159853.c	ENSGT00940000157379.l.a	ENSGT00740000116961.a	ENSGT00940000155218.A.d	ENSGT00940000161589.q	ENSGT00390000005939.a.b.a.a	ENSGT00940000163813.k	ENSGT00940000156490.b.a.c	ENSGT00990000211061	ENSGT00940000157262.m.b.a	ENSGT00940000153541.A.d	ENSGT00940000156027.a.e #12	ENSGT00390000003282.B.e.a #19	ENSGT00940000156062.n.c #20	ENSGT00940000158273.m.a #22	ENSGT00940000156084.a.a #28	ENSGT00950000183041.A.a.b.a	ENSGT00940000164112.a.k.a	ENSGT00530000064244.a	ENSGT00940000156915.f.a.c #32	ENSGT00390000009491.d.o #33	ENSGT00940000156047.b.c #35	ENSGT00940000158523.c.a.d #36	ENSGT00940000162955	ENSGT00940000164549.a.a.c	ENSGT00940000158284.vb.a	ENSGT00940000154471.a.b.a.a.b.b.c	ENSGT00940000159597.c	ENSGT00940000168452.a	ENSGT00940000164282.a.b
River trout	MODERN SPECIES	20	MTG2 (ENSSTUG00000023556)	ENSSTUG00000023533	ENSSTUG00000023470	ENSSTUG00000023444	ENSSTUG00000023432	ENSSTUG00000023429	irf10 (ENSSTUG00000023405)	bmp7b (ENSSTUG00000023390)	ENSSTUG00000023360	ENSSTUG00000023348	DUSP7 (ENSSTUG00000023320)	ENSSTUG00000023300	slc6a1a (ENSSTUG00000023232) #12	VGLL4 (ENSSTUG00000023195) #19	syn2a (ENSSTUG00000019732) #20	ENSSTUG00000019571 #22	RAF1 (ENSSTUG00000018748) #28	cnbpa (ENSSTUG00000018687)	ENSSTUG00000018649	ENSSTUG00000018632	IQSEC1 (ENSSTUG00000018328) #32	NUP210 (ENSSTUG00000017715) #33	FBLN2 (ENSSTUG00000017495) #35	WNT7A (ENSSTUG00000017462) #36	zgc:171857 (ENSSTUG00000017428)	ENSSTUG00000017399	adtrp1 (ENSSTUG00000017392)	BICD2 (ENSSTUG00000017276)	FGD3 (ENSSTUG00000017176)	ENSSTUG00000017162	ENSSTUG00000017155
Atlantic salmon	MODERN SPECIES	6	SS18L1 (ENSSSAG00000095110)	MTG2 (ENSSSAG00000040162)	ENSSSAG00000105660	ENSSSAG00000040049	ENSSSAG00000038989	ENSSSAG00000038288	ENSSSAG00000038413	ENSSSAG00000037663	ENSSSAG00000037152	ENSSSAG00000036866	DUS7 (ENSSSAG00000036380)	TNNC1 (ENSSSAG00000036263)	slc6a1a (ENSSSAG00000034299) #12	ENSSSAG00000089027 #19	syn2a (ENSSSAG00000008160) #20	ENSSSAG00000007991 #22	ENSSSAG00000087293	ENSSSAG00000014280 #28	cnbpa (ENSSSAG00000007968)	ENSSSAG00000104725	IQSEC1 (ENSSSAG00000007667) #32	NUP210 (ENSSSAG00000007421) #33	FBLN2 (ENSSSAG00000007361) #35	WNT7A (ENSSSAG00000083105) #36	ENSSSAG00000007323	fbxw12 (ENSSSAG00000007336)	ENSSSAG00000094839	ENSSSAG00000108729	ENSSSAG00000006906	ENSSSAG00000006851	ENSSSAG00000006841
Salmoninae	ANCESTRAL SPECIES	465	ENSGT00940000159695	ENSGT00940000159853.d	ENSGT00940000157379.l.b	ENSGT00940000161589.r	ENSGT00940000165182.c	ENSGT00390000005939.a.b.a.b	ENSGT00940000163813.l	ENSGT00940000156490.b.a.d	ENSGT00390000001787	ENSGT00940000156030.j.j	ENSGT00940000157262.m.b.b	ENSGT00940000153541.A.c	ENSGT00940000156027.a.f #12	ENSGT00390000003282.B.e.b #19	ENSGT00940000156062.n.d #20	ENSGT00940000158273.m.b #22	ENSGT00940000156084.a.b #28	ENSGT00950000183041.A.a.b.b	ENSGT00940000164112.a.k.b
Salmoninae_a	ANCESTRAL SPECIES	26	ENSGT00940000159853.d	ENSGT00940000157379.l.b	ENSGT00740000116961.b	ENSGT00940000161589.r	ENSGT00940000165182.c	ENSGT00390000005939.a.b.a.b	ENSGT00940000163813.l	ENSGT00940000156490.b.a.d	ENSGT00390000001787	ENSGT00940000156030.j.j	ENSGT00940000157262.m.b.b	ENSGT00940000153541.A.c	ENSGT00940000156027.a.f #12	ENSGT00390000003282.B.e.b #19	ENSGT00940000156062.n.d #20	ENSGT00940000158273.m.b #22	ENSGT00940000156084.a.b #28	ENSGT00950000183041.A.a.b.b	ENSGT00940000164112.a.k.b	ENSGT00940000182532	ENSGT00940000156915.f.a.d #32	ENSGT00390000009491.d.p #33	ENSGT00940000156047.b.d #35	ENSGT00940000158523.c.a.c #36	ENSGT00940000164549.a.a.d	ENSGT00940000158284.vb.b	ENSGT00940000154471.a.b.a.a.b.b.d	ENSGT00940000159597.d	ENSGT00940000168452.b	ENSGT00940000164282.a.a	ENSGT00940000158892.b.i.b
Salmo	ANCESTRAL SPECIES	4	ENSGT00940000167759	ENSGT00940000159853.d	ENSGT00940000157379.l.b	ENSGT00740000116961.b	ENSGT00940000161589.r	ENSGT00390000005939.a.b.a.b	ENSGT00940000163813.l	ENSGT00940000156490.b.a.d	ENSGT00390000001787	ENSGT00940000156030.j.j	ENSGT00940000157262.m.b.b	ENSGT00940000153541.A.c	ENSGT00940000156027.a.f #12	ENSGT00390000003282.B.e.b #19	ENSGT00940000156062.n.d #20	ENSGT00940000158273.m.b #22	ENSGT00940000156084.a.b #28	ENSGT00950000183041.A.a.b.b	ENSGT00940000164112.a.k.b	ENSGT00940000182532	ENSGT00940000156915.f.a.d #32	ENSGT00390000009491.d.p #33	ENSGT00940000156047.b.d #35	ENSGT00940000158523.c.a.c #36	ENSGT00940000164549.a.a.d	ENSGT00940000158284.vb.b	ENSGT00940000154471.a.b.a.a.b.b.d	ENSGT00940000159597.d	ENSGT00940000168452.b	ENSGT00940000164282.a.a	ENSGT00940000158892.b.i.b
Atlantic salmon	MODERN SPECIES	4	SS18L1 (ENSSSAG00000040243)	mtg2 (ENSSSAG00000045717)	y4629 (ENSSSAG00000045699)	ENSSSAG00000045657	ENSSSAG00000084801	ENSSSAG00000082434	ENSSSAG00000121498	ENSSSAG00000087720	ENSSSAG00000045416	ENSSSAG00000044979	ENSSSAG00000044955	ENSSSAG00000044930	slc6a1a (ENSSSAG00000043626) #12	ENSSSAG00000043588 #19	syn2a (ENSSSAG00000020439) #20	ENSSSAG00000016562 #22	ENSSSAG00000121239	RAF1 (ENSSSAG00000087185) #28	ENSSSAG00000007959	IQSEC1 (ENSSSAG00000010201) #32	NUP210 (ENSSSAG00000009711) #33	FBLN2 (ENSSSAG00000008885) #35	WNT7A (ENSSSAG00000098279) #36	ENSSSAG00000008699	adtrp1 (ENSSSAG00000008678)	ENSSSAG00000119561	ENSSSAG00000007544	ENSSSAG00000086223	ENSSSAG00000007478	SUSD3 (ENSSSAG00000007472)	ENSSSAG00000007466
River trout	MODERN SPECIES	23	TAF4 (ENSSTUG00000050283)	lsm14b (ENSSTUG00000050286)	ENSSTUG00000050289	MTG2 (ENSSTUG00000050298)	ENSSTUG00000050302	ENSSTUG00000050308	ENSSTUG00000050312	irf10 (ENSSTUG00000050316)	bmp7b (ENSSTUG00000050322)	spo11 (ENSSTUG00000050338)	ENSSTUG00000003633	DUSP7 (ENSSTUG00000003870)	ENSSTUG00000003897	slc6a1a (ENSSTUG00000003932) #12	VGLL4 (ENSSTUG00000003988) #19	ENSSTUG00000004031 #22	RAF1 (ENSSTUG00000004779) #28	cnbpa (ENSSTUG00000005293)	ENSSTUG00000005313	ENSSTUG00000005421	IQSEC1 (ENSSTUG00000005479) #32	ENSSTUG00000005797	ENSSTUG00000005806	ENSSTUG00000005811	NUP210 (ENSSTUG00000005830) #33	FBLN2 (ENSSTUG00000006286) #35	WNT7A (ENSSTUG00000007105) #36	ENSSTUG00000007112	adtrp1 (ENSSTUG00000007153)	BICD2 (ENSSTUG00000007170)	FGD3 (ENSSTUG00000007217)
Oncorhynchus	ANCESTRAL SPECIES	7	ENSGT00940000159853.d	ENSGT00940000157379.l.b	ENSGT00740000116961.b	ENSGT00940000161589.r	ENSGT00940000165182.c	ENSGT00390000005939.a.b.a.b	ENSGT00940000163813.l	ENSGT00940000156490.b.a.d	ENSGT00390000001787	ENSGT00940000156030.j.j	ENSGT00940000157262.m.b.b	ENSGT00940000153541.A.c	ENSGT00940000156027.a.f #12	ENSGT00390000003282.B.e.b #19	ENSGT00940000156062.n.d #20	ENSGT00940000158273.m.b #22	ENSGT00940000156084.a.b #28	ENSGT00950000183041.A.a.b.b	ENSGT00940000164112.a.k.b	ENSGT00940000156915.f.a.d #32	ENSGT00390000009491.d.p #33	ENSGT00940000156047.b.d #35	ENSGT00940000158523.c.a.c #36	ENSGT00940000164549.a.a.d	ENSGT00940000158284.vb.b	ENSGT00940000154471.a.b.a.a.b.b.d	ENSGT00940000159597.d	ENSGT00940000168452.b	ENSGT00940000164282.a.a	ENSGT00940000158892.b.i.b	ENSGT00940000157161.a.b.f.b
Rainbow trout	MODERN SPECIES	7	ENSOMYG00000047146	ENSOMYG00000064417	ENSOMYG00000072712	ENSOMYG00000047149	ENSOMYG00000047156	IRF10a (ENSOMYG00000047162)	ENSOMYG00000047171	ENSOMYG00000047178	ENSOMYG00000047191	ENSOMYG00000047202	ENSOMYG00000047204	slc6a1a (ENSOMYG00000047213) #12	ENSOMYG00000047222 #19	syn2a (ENSOMYG00000029121) #20	ENSOMYG00000049529	ENSOMYG00000029281 #22	ENSOMYG00000029550 #28	cnbpa (ENSOMYG00000029713)	ENSOMYG00000029739	ENSOMYG00000048424	ENSOMYG00000030335 #32	ENSOMYG00000032197	ENSOMYG00000048445	ENSOMYG00000032219 #35	ENSOMYG00000074569	ENSOMYG00000032239 #36	ENSOMYG00000032247	adtrp1 (ENSOMYG00000032253)	ENSOMYG00000064492	ENSOMYG00000032309	FGD3 (ENSOMYG00000032391)
Oncorhynchus_a	ANCESTRAL SPECIES	9	ENSGT00940000159695.db	ENSGT00940000159853.d	ENSGT00940000157379.l.b	ENSGT00940000161589.r	ENSGT00940000165182.c	ENSGT00390000005939.a.b.a.b	ENSGT00940000163813.l	ENSGT00940000156490.b.a.d	ENSGT00390000001787	ENSGT00940000156030.j.j	ENSGT00940000157262.m.b.b	ENSGT00940000153541.A.c	ENSGT00940000156027.a.f #12	ENSGT00390000003282.B.e.b #19	ENSGT00940000156062.n.d #20	ENSGT00940000158273.m.b #22	ENSGT00940000156084.a.b #28	ENSGT00950000183041.A.a.b.b	ENSGT00940000164112.a.k.b	ENSGT00940000182532	ENSGT01010000230178	ENSGT00390000009491.d.p #33	ENSGT00940000156047.b.d #35	ENSGT00940000158523.c.a.c #36	ENSGT00940000164549.a.a.d	ENSGT00940000158284.vb.b	ENSGT00940000154471.a.b.a.a.b.b.d	ENSGT00940000159597.d	ENSGT00940000168452.b	ENSGT00940000164282.a.a	ENSGT00940000158892.b.i.b
Chinook salmon	MODERN SPECIES	14	hsd17b12a (ENSOTSG00005019534)	api5 (ENSOTSG00005019535)	samm50 (ENSOTSG00005019536)	ENSOTSG00005019958	ENSOTSG00005019959	tdg.1 (ENSOTSG00005019960)	ENSOTSG00005019961	ENSOTSG00005020007	spo11 (ENSOTSG00005020236)	ENSOTSG00005020733	DUSP7 (ENSOTSG00005020740)	ENSOTSG00005020742	slc6a1a (ENSOTSG00005020746) #12	VGLL4 (ENSOTSG00005020961) #19	syn2a (ENSOTSG00005020974) #20	ENSOTSG00005022208 #22	RAF1 (ENSOTSG00005022232) #28	cnbpa (ENSOTSG00005022302)	ENSOTSG00005022303	ENSOTSG00005027840	ENSOTSG00005027864	ENSOTSG00005027935 #33	FBLN2 (ENSOTSG00005027937) #35	WNT7A (ENSOTSG00005028122) #36	ENSOTSG00005028123	adtrp1 (ENSOTSG00005028124)	BICD2 (ENSOTSG00005028126)	FGD3 (ENSOTSG00005028439)	ENSOTSG00005028442	ENSOTSG00005028443	NINJ1 (ENSOTSG00005028445)
Coho salmon	MODERN SPECIES	16	PSMA7 (ENSOKIG00005014161)	SS18L1 (ENSOKIG00005014201)	MTG2 (ENSOKIG00005014255)	ENSOKIG00005014273	ENSOKIG00005014287	ENSOKIG00005014289	irf10 (ENSOKIG00005014293)	BMP7 (ENSOKIG00005014314)	spo11 (ENSOKIG00005014331)	ENSOKIG00005014605	DUSP7 (ENSOKIG00005014759)	ENSOKIG00005014774	slc6a1a (ENSOKIG00005014797) #12	VGLL4 (ENSOKIG00005014895) #19	syn2a (ENSOKIG00005014947) #20	ENSOKIG00005015625 #22	RAF1 (ENSOKIG00005015922) #28	cnbpa (ENSOKIG00005016035)	ENSOKIG00005016060	IQSEC1 (ENSOKIG00005016202) #32	ENSOKIG00005018060	FBLN2 (ENSOKIG00005018076) #35	WNT7A (ENSOKIG00005018188) #36	ENSOKIG00005018196	adtrp1 (ENSOKIG00005018209)	BICD2 (ENSOKIG00005018238)	ENSOKIG00005018316	ENSOKIG00005018373	ENSOKIG00005018389	ENSOKIG00005018415	ENSOKIG00005018461
Huchen	MODERN SPECIES	2089									spo11 (ENSHHUG00000014597)	ENSHHUG00000014639	DUSP7 (ENSHHUG00000014668)	ENSHHUG00000014715	slc6a1a (ENSHHUG00000014726) #12	VGLL4 (ENSHHUG00000014768) #19	syn2a (ENSHHUG00000014779) #20	ENSHHUG00000014896 #22	RAF1 (ENSHHUG00000014935) #28	cnbpa (ENSHHUG00000014966)	ENSHHUG00000015000
Salmoninae	ANCESTRAL SPECIES	400																ENSGT00940000158273.n #22	ENSGT00390000013266 #25	ENSGT00390000003839.a #26	ENSGT00390000003839.b #26	ENSGT00950000183077.a.b.s #27	ENSGT00940000156084.b #28	ENSGT00950000183041.A.a.a.a	ENSGT00390000014109	ENSGT00940000164112.a.l	ENSGT00940000161980	ENSGT00940000163561	ENSGT00950000183014.f.b.a.b	ENSGT00390000008330	ENSGT00940000156915.f.b #32	ENSGT00940000156308 #34	ENSGT00940000156047.a.b #35
Salmoninae_a	ANCESTRAL SPECIES	78																ENSGT00940000158273.n #22	ENSGT00390000013266 #25	ENSGT00390000003839.a #26	ENSGT01030000235208	ENSGT00390000003839.b #26	ENSGT00950000183077.a.b.s #27	ENSGT00940000156084.b #28	ENSGT00950000183041.A.a.a.a.b	ENSGT00940000164112.a.l	ENSGT00940000161980	ENSGT00940000163561	ENSGT00950000183014.f.b.a.b	ENSGT00390000008330	ENSGT00940000156915.f.b #32	ENSGT00940000156308 #34	ENSGT00940000156047.a.a.a #35
Salmo	ANCESTRAL SPECIES	61																ENSGT00940000158273.n #22	ENSGT00390000013266 #25	ENSGT01030000235208	ENSGT00390000003839.b #26	ENSGT00950000183077.a.b.s #27	ENSGT00940000156084.b #28	ENSGT00950000183041.A.a.a.a.b	ENSGT00940000164112.a.l	ENSGT00940000161980	ENSGT00950000183014.f.b.a.b	ENSGT00390000008330	ENSGT00940000156915.f.b #32	ENSGT00940000156308 #34	ENSGT00940000156047.a.b #35	ENSGT00940000158523.c.b #36	ENSGT00940000164549.a.b
River trout	MODERN SPECIES	7																PPARG (ENSSTUG00000034013) #22	tsen2 (ENSSTUG00000034204) #25	ENSSTUG00000034229	MKRN2OS (ENSSTUG00000034234) #26	mkrn2 (ENSSTUG00000034245) #27	raf1b (ENSSTUG00000034296) #28	ENSSTUG00000034948	zgc:77375 (ENSSTUG00000034964)	rab43 (ENSSTUG00000034972)	ENSSTUG00000034973	ENSSTUG00000034976	ENSSTUG00000034980	EFCC1 (ENSSTUG00000034995)	ENSSTUG00000035002	IQSEC1 (ENSSTUG00000035075) #32	hdac11 (ENSSTUG00000035494) #34
Atlantic salmon	MODERN SPECIES	14																PPARG (ENSSSAG00000029040) #22	tsen2 (ENSSSAG00000028772) #25	mkrn2os (ENSSSAG00000028619) #26	mkrn2 (ENSSSAG00000028437) #27	raf1b (ENSSSAG00000015667) #28	ENSSSAG00000008850	zgc:77375 (ENSSSAG00000084248)	rab43 (ENSSSAG00000117714)	ENSSSAG00000008818	ENSSSAG00000091562	ENSSSAG00000008800	IQSEC1 (ENSSSAG00000009162) #32	ENSSSAG00000121382	hdac11 (ENSSSAG00000008746) #34	FBLN2 (ENSSSAG00000008760) #35	ENSSSAG00000064612 #36
Oncorhynchus	ANCESTRAL SPECIES	81																ENSGT00940000158273.n #22	ENSGT00390000013266 #25	ENSGT00390000003839.a #26	ENSGT00390000003839.b #26	ENSGT00950000183077.a.b.s #27	ENSGT00950000183041.A.a.a.a.b	ENSGT00940000164112.a.l	ENSGT00940000161980	ENSGT00940000163561	ENSGT00390000008330	ENSGT00940000156915.f.b #32	ENSGT00940000156308 #34	ENSGT00940000156047.a.b #35	ENSGT01040000241044	ENSGT00940000158523.c.b #36	ENSGT00940000164549.a.b
Rainbow trout	MODERN SPECIES	28	ENSOMYG00000056195	ENSOMYG00000035154	FAM120A (ENSOMYG00000035087)	phf2 (ENSOMYG00000005882)	ENSOMYG00000068585	barx1 (ENSOMYG00000006021)	ptpdc1a (ENSOMYG00000006063)	ENSOMYG00000071314 #36	ENSOMYG00000074785	ENSOMYG00000058266	FBLN2 (ENSOMYG00000056000) #35	HDAC11 (ENSOMYG00000006191) #34	IQSEC1 (ENSOMYG00000006284) #32	ENSOMYG00000052537	ENSOMYG00000062142	PPARG (ENSOMYG00000006827) #22	ENSOMYG00000053804	ENSOMYG00000006513	ENSOMYG00000006499 #26	mkrn2 (ENSOMYG00000006467) #27	ENSOMYG00000006436	ENSOMYG00000059639	zgc:77375 (ENSOMYG00000006359)	ENSOMYG00000066321	rab43 (ENSOMYG00000006335)	ENSOMYG00000023229	ENSOMYG00000006946
Oncorhynchus_a	ANCESTRAL SPECIES	95																ENSGT00940000158273.n #22	ENSGT00390000013266 #25	ENSGT00390000003839.a #26	ENSGT00390000003839.b #26	ENSGT00950000183077.a.b.s #27	ENSGT00950000183041.A.a.a.a.b	ENSGT00940000164112.a.l	ENSGT00940000161980	ENSGT00940000163561	ENSGT00390000008330	ENSGT00940000156915.f.b #32	ENSGT00940000156308 #34	ENSGT00940000156047.a.b #35	ENSGT01040000241044	ENSGT00940000158523.c.b #36	ENSGT00940000164549.a.b
Coho salmon	MODERN SPECIES	25															ENSOKIG00005000199	PPARG (ENSOKIG00005000160) #22	ENSOKIG00005000081	TSEN2 (ENSOKIG00005000064) #25	MKRN2OS (ENSOKIG00005000038) #26	ENSOKIG00005028181	mkrn2 (ENSOKIG00005028154) #27	ENSOKIG00005028124	zgc:77375 (ENSOKIG00005028061)	rab43 (ENSOKIG00005028040)	ENSOKIG00005028031	ENSOKIG00005027979	IQSEC1 (ENSOKIG00005027932) #32	hdac11 (ENSOKIG00005027857) #34	FBLN2 (ENSOKIG00005027579) #35	ENSOKIG00005027544	WNT7A (ENSOKIG00005027513) #36
Chinook salmon	MODERN SPECIES	31																PPARG (ENSOTSG00005028118) #22	MKRN2OS (ENSOTSG00005028114) #26	ENSOTSG00005028113 #26	tsen2 (ENSOTSG00005028112) #25	ptpdc1a (ENSOTSG00005028109)	ENSOTSG00005028106	wnt7aa (ENSOTSG00005028104) #36	ENSOTSG00005028103 #35	PPP1R3D (ENSOTSG00005028101)	ENSOTSG00005028100	phactr3b (ENSOTSG00005028097)	FLNB (ENSOTSG00005008043)	DNASE1L3 (ENSOTSG00005007981)	ABHD6 (ENSOTSG00005007977)	rpp14 (ENSOTSG00005007976)	HTD2 (ENSOTSG00005007975)
Huchen	MODERN SPECIES	8147																ENSHHUG00000001881 #22
Northern pike	DUPLICATION
Northern pike	MODERN SPECIES	1														syn2b (ENSELUG00000013135)	timp4.3 (ENSELUG00000028743) #21	PPARG (ENSELUG00000013192) #22	tsen2 (ENSELUG00000013262) #25	MKRN2OS (ENSELUG00000013278) #26	ENSELUG00000013290 #26	mkrn2 (ENSELUG00000013320) #27	raf1b (ENSELUG00000013381) #28	ENSELUG00000013402	isy1 (ENSELUG00000000489)	zgc:77375 (ENSELUG00000013454)	rab43 (ENSELUG00000013468)	nuf2 (ENSELUG00000013487)	ENSELUG00000013517	ENSELUG00000013547	acad9 (ENSELUG00000013607)	IQSEC1 (ENSELUG00000013644) #32	hdac11 (ENSELUG00000026940) #34
Northern pike	MODERN SPECIES	11	ENSELUG00000016466	ENSELUG00000026495	ENSELUG00000028265	ENSELUG00000016476	ENSELUG00000024742	irf10 (ENSELUG00000016496)	bmp7b (ENSELUG00000000624)	ENSELUG00000016512	spo11 (ENSELUG00000016656)	ENSELUG00000027063	DUSP7 (ENSELUG00000016725)	tnnc1 (ENSELUG00000024716)	slc6a1a (ENSELUG00000016865) #12	VGLL4 (ENSELUG00000016892) #19	syn2a (ENSELUG00000016963) #20	ENSELUG00000017401 #22	raf1a (ENSELUG00000017588) #28	cnbpa (ENSELUG00000017627)	ENSELUG00000000698	ENSELUG00000017665	ENSELUG00000000702	ENSELUG00000017674	ENSELUG00000017694	ENSELUG00000017705	IQSEC1 (ENSELUG00000017810) #32	NUP210 (ENSELUG00000017911) #33	FBLN2 (ENSELUG00000018004) #35	WNT7A (ENSELUG00000018032) #36	zgc:171857 (ENSELUG00000018043)	ENSELUG00000018054	adtrp1 (ENSELUG00000018080)
Spotted gar	MODERN SPECIES	671	aspn (ENSLOCG00000013849)	OMD (ENSLOCG00000013856)	ogna (ENSLOCG00000013860)	nol8 (ENSLOCG00000013864)	ENSLOCG00000013869	iars1 (ENSLOCG00000013871)	atp2b2 (ENSLOCG00000013890)	SLC6A11 (ENSLOCG00000013904) #11	slc6a1a (ENSLOCG00000013915) #12	HRH1 (ENSLOCG00000013921) #16	ATG7 (ENSLOCG00000013924) #17	vgll4b (ENSLOCG00000013927) #19	tamm41 (ENSLOCG00000013931)	syn2a (ENSLOCG00000013941) #20	timp4.2 (ENSLOCG00000013951) #21	PPARG (ENSLOCG00000013954) #22	tsen2 (ENSLOCG00000013958) #25	MKRN2OS (ENSLOCG00000013968) #26	mkrn2 (ENSLOCG00000013970) #27	raf1b (ENSLOCG00000013974) #28	cnbpb (ENSLOCG00000013985)	isy1 (ENSLOCG00000013988)	zgc:77375 (ENSLOCG00000013994)	rab43 (ENSLOCG00000014001)	nuf2 (ENSLOCG00000014004)	nuf2 (ENSLOCG00000014009)	ENSLOCG00000018261	GP9 (ENSLOCG00000018262)	ENSLOCG00000014014	ENSLOCG00000014017	acad9 (ENSLOCG00000014020)
Reedfish	MODERN SPECIES	9	aspn (ENSECRG00000018729)	OMD (ENSECRG00000018893)	ogna (ENSECRG00000018922)	nol8 (ENSECRG00000018962)	iars1 (ENSECRG00000019013)	ENSECRG00000019049	ENSECRG00000019113	SLC6A11 (ENSECRG00000019456) #11	slc6a1a (ENSECRG00000019515) #12	HRH1 (ENSECRG00000019568) #16	ATG7 (ENSECRG00000019598) #17	vgll4b (ENSECRG00000019720) #19	tamm41 (ENSECRG00000020546)	syn2a (ENSECRG00000020574) #20	timp4.2 (ENSECRG00000020586) #21	PPARG (ENSECRG00000020604) #22	TSEN2 (ENSECRG00000020616) #25	MKRN2OS (ENSECRG00000020632) #26	mkrn2 (ENSECRG00000020646) #27	raf1b (ENSECRG00000020686) #28	cnbpb (ENSECRG00000020753)	isy1 (ENSECRG00000020784)	zgc:77375 (ENSECRG00000020811)	rab43 (ENSECRG00000020826)	nuf2 (ENSECRG00000020838)	ENSECRG00000020870	GP9 (ENSECRG00000020886)	EFCC1 (ENSECRG00000020895)	ENSECRG00000020909	acad9 (ENSECRG00000020941)	IQSEC1 (ENSECRG00000020985) #32
Elephant shark	MODERN SPECIES	1592														syn2a (ENSCMIG00000010866) #20	TIMP4 (ENSCMIG00000010881) #21	PPARG (ENSCMIG00000010883) #22	tsen2 (ENSCMIG00000010886) #25	mkrn2os (ENSCMIG00000010887) #26	mkrn2 (ENSCMIG00000010891) #27	raf1b (ENSCMIG00000010901) #28	cnbpb (ENSCMIG00000010936)	isy1 (ENSCMIG00000010938)	zgc:77375 (ENSCMIG00000010950)	rab43 (ENSCMIG00000010951)	ENSCMIG00000010954	ENSCMIG00000010960	EFCC1 (ENSCMIG00000010962)	ENSCMIG00000010964	acad9 (ENSCMIG00000010969)	IQSEC1 (ENSCMIG00000010972) #32	NUP210 (ENSCMIG00000011053) #33