Hystricomorpha	ANCESTRAL SPECIES	6	ENSGT00940000162075	ENSGT00390000007772	ENSGT00390000006095	ENSGT00900000141083.d	ENSGT00940000160165	ENSGT00940000159675	ENSGT00950000183179.b.b #8	ENSGT00950000183086.a.a.b #9	ENSGT00530000064220 #13	ENSGT00940000154369.d #15	ENSGT01030000234629.C #17	ENSGT00390000016324 #19	ENSGT00940000161449 #20	ENSGT00940000158201 #21	ENSGT00530000068221	ENSGT00940000155481 #22	ENSGT00940000160511 #24	ENSGT01030000234579.A.b #25	ENSGT00940000157909.j #26	ENSGT01000000214434.A #28	ENSGT00670000098080 #29	ENSGT00940000155714 #30	ENSGT00950000183097.a.b	ENSGT01060000248594.f #31	ENSGT00940000157649 #33	ENSGT00940000162334 #34	ENSGT00390000010687.a.a #35	ENSGT00940000161292 #36	ENSGT00940000160094 #37	ENSGT00520000055625.b	ENSGT01030000234558.A.a.b
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	27	ENSHGLG00000012202 #7	NMNAT3 (ENSHGLG00000012035) #8	ENSHGLG00000012472 #9	ENSHGLG00000044512 #10	ENSHGLG00000020964 #11	ENSHGLG00000049519 #12	ENSHGLG00000013325 #13	ENSHGLG00000041508 #14	ENSHGLG00000045813 #15	ENSHGLG00000021114 #16	SPSB4 (ENSHGLG00000013816) #17	ENSHGLG00000014428 #18	PXYLP1 (ENSHGLG00000014087) #19	ZBTB38 (ENSHGLG00000011669) #20	RASA2 (ENSHGLG00000012050) #21	RNF7 (ENSHGLG00000038279) #22	ENSHGLG00000033069 #23	GRK7 (ENSHGLG00000012629) #24	ENSHGLG00000012755 #25	TFDP2 (ENSHGLG00000013441) #26	ENSHGLG00000033455 #27	GK5 (ENSHGLG00000014374) #28	XRN1 (ENSHGLG00000014476) #29	ATR (ENSHGLG00000016875) #30	TRPC1 (ENSHGLG00000017039) #31	ENSHGLG00000048356 #32	PCOLCE2 (ENSHGLG00000017054) #33	PAQR9 (ENSHGLG00000017213) #34	U2SURP (ENSHGLG00000017227) #35	CHST2 (ENSHGLG00000041521) #36	ENSHGLG00000018200 #37
Naked mole-rat female	MODERN SPECIES	21	ENSHGLG00000037909	CRX (ENSHGLG00000013944)	ENSHGLG00000048960	ENSHGLG00000034800	SULT2A1 (ENSHGLG00000013462)	ENSHGLG00000018150	ENSHGLG00000015622	ELSPBP1 (ENSHGLG00000015441)	ENSHGLG00000015393	PLA2G4C (ENSHGLG00000015361)	LIG1 (ENSHGLG00000015327)	ZSWIM9 (ENSHGLG00000015496)	ENSHGLG00000014014	ENSHGLG00000012468	ENSHGLG00000045839	ENSHGLG00000020793 ##22	ENSHGLG00000044217	EMP3 (ENSHGLG00000009701)	TMEM143 (ENSHGLG00000016372)	SYNGR4 (ENSHGLG00000016321)	KDELR1 (ENSHGLG00000032231)	GRIN2D (ENSHGLG00000010637)	GRWD1 (ENSHGLG00000009547)	KCNJ14 (ENSHGLG00000050995)	CYTH2 (ENSHGLG00000008501)	ENSHGLG00000041839	SULT2B1 (ENSHGLG00000005796)	FAM83E (ENSHGLG00000005067)	SPACA4 (ENSHGLG00000033285)	ENSHGLG00000016158	SPHK2 (ENSHGLG00000016115)
Hystricomorpha_a	ANCESTRAL SPECIES	4	ENSGT00940000157522	ENSGT00940000162075	ENSGT00390000006095	ENSGT00900000141083.d	ENSGT00940000160165	ENSGT00940000159675	ENSGT00950000183179.b.b #8	ENSGT00950000183086.a.a.b #9	ENSGT00530000064220 #13	ENSGT00940000154369.d.u #15	ENSGT01030000234629.C #17	ENSGT00390000016324 #19	ENSGT00940000161449 #20	ENSGT00940000158201 #21	ENSGT00530000068221	ENSGT00940000155481 #22	ENSGT00940000160511 #24	ENSGT01030000234579.A.b #25	ENSGT00940000157909.j #26	ENSGT01000000214434.A #28	ENSGT00670000098080 #29	ENSGT00940000155714 #30	ENSGT00950000183097.a.b	ENSGT01060000248594.f #31	ENSGT00940000157649 #33	ENSGT00940000162334 #34	ENSGT00390000010687.a.a #35	ENSGT00940000161292 #36	ENSGT00940000160094 #37	ENSGT00520000055625.b	ENSGT01030000234558.A.a.b
Hystricomorpha_b	ANCESTRAL SPECIES	45	ENSGT00940000157522	ENSGT00940000162075	ENSGT00390000006095	ENSGT00900000141083.d	ENSGT00940000160165	ENSGT00940000159675	ENSGT00950000183179.b.b #8	ENSGT00950000183086.a.a.b #9	ENSGT00530000064220 #13	ENSGT00940000154369.d.u #15	ENSGT01030000234629.C #17	ENSGT00390000016324 #19	ENSGT00940000161449 #20	ENSGT00940000158201 #21	ENSGT00530000068221	ENSGT00940000155481 #22	ENSGT00940000160511 #24	ENSGT01030000234579.A.b #25	ENSGT00940000157909.j #26	ENSGT01000000214434.A #28	ENSGT00670000098080 #29	ENSGT00940000155714 #30	ENSGT00950000183097.a.b	ENSGT01060000248594.f #31	ENSGT00940000157649 #33	ENSGT00940000162334 #34	ENSGT00390000010687.a.a #35	ENSGT00940000161292 #36	ENSGT00940000160094 #37	ENSGT00520000055625.b	ENSGT01030000234558.A.a.b
Degu	DUPLICATION
Degu	DUPLICATION
Degu	MODERN SPECIES	203	PTCD3 (ENSODEG00000003461)	POLR1A (ENSODEG00000003542)	ENSODEG00000018941	ST3GAL5 (ENSODEG00000003647)	ATOH8 (ENSODEG00000003670)	SFTPB (ENSODEG00000003695)	USP39 (ENSODEG00000003717)	C2orf68 (ENSODEG00000003734)	TMEM150A (ENSODEG00000003753)	RNF181 (ENSODEG00000003046)	VAMP5 (ENSODEG00000003093)	VAMP8 (ENSODEG00000003107)	GGCX (ENSODEG00000003141)	ENSODEG00000003186	SH2D6 (ENSODEG00000003239)	ENSODEG00000018929 #22	CAPG (ENSODEG00000003321)	ELMOD3 (ENSODEG00000003393)	RETSAT (ENSODEG00000003469)	TCF7L1 (ENSODEG00000003559)	ENSODEG00000003586	ENSODEG00000003596	DNAH6 (ENSODEG00000003756)	SUCLG1 (ENSODEG00000002195)	ENSODEG00000002212	ENSODEG00000002222
Degu	MODERN SPECIES	69						TRIM42 (ENSODEG00000009982) #13	ENSODEG00000009644 #7	SPSB4 (ENSODEG00000010189) #17	PXYLP1 (ENSODEG00000009182) #19	ENSODEG00000019578	ENSODEG00000019641	ZBTB38 (ENSODEG00000010676) #20	ENSODEG00000009714	RASA2 (ENSODEG00000008895) #21	ENSODEG00000010594	ENSODEG00000010015 #22	ENSODEG00000009611	ENSODEG00000010281	GRK7 (ENSODEG00000009406) #24	ENSODEG00000010038 #25	TFDP2 (ENSODEG00000009381) #26	GK5 (ENSODEG00000009274) #28	ENSODEG00000009043	ENSODEG00000008804 #29	ATR (ENSODEG00000011542) #30	ENSODEG00000019858	PLS1 (ENSODEG00000011164)	TRPC1 (ENSODEG00000010221) #31	PCOLCE2 (ENSODEG00000009524) #33	PAQR9 (ENSODEG00000019884) #34	U2SURP (ENSODEG00000008767) #35
Degu	MODERN SPECIES	49	ENSODEG00000018283	ADCY2 (ENSODEG00000018279)	FASTKD3 (ENSODEG00000018378)	ENSODEG00000018330	SEMA5A (ENSODEG00000018380)	ENSODEG00000018296	ATPSCKMT (ENSODEG00000018372)	ENSODEG00000018260	CMBL (ENSODEG00000018386)	ENSODEG00000018315	MARCHF6 (ENSODEG00000018354)	ROPN1L (ENSODEG00000018356)	ANKRD33B (ENSODEG00000018446)	DAP (ENSODEG00000018321)	CTNND2 (ENSODEG00000018402)	ENSODEG00000018270 #22
Guinea pig	MODERN SPECIES	8	PIK3CB (ENSCPOG00000000884)	ENSCPOG00000038087	MRPS22 (ENSCPOG00000034779)	COPB2 (ENSCPOG00000014668)	RBP2 (ENSCPOG00000004129)	RBP1 (ENSCPOG00000033535)	NMNAT3 (ENSCPOG00000034365) #8	CLSTN2 (ENSCPOG00000003011) #9	TRIM42 (ENSCPOG00000012108) #13	SLC25A36 (ENSCPOG00000019810) #15	SPSB4 (ENSCPOG00000033038) #17	PXYLP1 (ENSCPOG00000035466) #19	ZBTB38 (ENSCPOG00000033797) #20	RASA2 (ENSCPOG00000014013) #21	ENSCPOG00000032259	RNF7 (ENSCPOG00000036031) #22	GRK7 (ENSCPOG00000013262) #24	ENSCPOG00000003739 #25	TFDP2 (ENSCPOG00000013203) #26	GK5 (ENSCPOG00000004732) #28	ENSCPOG00000003458 #29	ENSCPOG00000035199 #29	ATR (ENSCPOG00000007001) #30	PLS1 (ENSCPOG00000003196)	TRPC1 (ENSCPOG00000003198) #31	PCOLCE2 (ENSCPOG00000009999) #33	PAQR9 (ENSCPOG00000021386) #34	U2SURP (ENSCPOG00000011656) #35	CHST2 (ENSCPOG00000026369) #36	SLC9A9 (ENSCPOG00000000663) #37	DIPK2A (ENSCPOG00000009308)