Euarchontoglires_A	ANCESTRAL SPECIES	11	ENSGT00940000154585.b #7	ENSGT00940000160128 #8	ENSGT00950000183061.a.a.a.a.b #9	ENSGT00940000153168.A #10	ENSGT00940000160157 #11	ENSGT00940000155516 #12	ENSGT00940000153259.a.a.a #13	ENSGT00940000154336.c.b #14	ENSGT00940000154336.c.a #15	ENSGT00940000158517 #16	ENSGT00940000163549 #17	ENSGT00390000001432 #18	ENSGT01090000260082.d.a.a.a.a #19	ENSGT00390000014785 #20	ENSGT00940000159316 #21	ENSGT00390000018389 #22	ENSGT00940000153664.A.b.a #23	ENSGT00940000162717	ENSGT00940000153902.b #24	ENSGT00530000063529.B #25	ENSGT00940000154103.b #26	ENSGT00950000182925.D.a.b.a.b #27	ENSGT00940000162988 #28	ENSGT00940000163246	ENSGT00940000162502	ENSGT00950000182925.D.a.b.a.a.b ##27	ENSGT00950000182925.D.a.a.b.b ##27	ENSGT00390000004891	ENSGT00940000163673	ENSGT00940000162603	ENSGT00940000161062
Glires	ANCESTRAL SPECIES	10	ENSGT00940000160128 #8	ENSGT00950000183061.a.a.a.a.b #9	ENSGT00940000153168.A #10	ENSGT00940000160157 #11	ENSGT00940000155516 #12	ENSGT00940000153259.a.a.a #13	ENSGT00940000154336.c.b #14	ENSGT00940000154336.c.a #15	ENSGT00940000158517 #16	ENSGT00940000163549 #17	ENSGT00390000001432 #18	ENSGT01090000260082.d.a.a.a.a #19	ENSGT00940000166548	ENSGT00390000014785 #20	ENSGT00940000159316 #21	ENSGT00390000018389 #22	ENSGT00940000153664.A.b.a #23	ENSGT00940000162717	ENSGT00940000153902.b #24	ENSGT00530000063529.B #25	ENSGT00940000154103.b #26	ENSGT00950000182925.D.a.b.a.b #27	ENSGT00940000163246	ENSGT00940000162502	ENSGT00950000182925.D.a.b.a.a.b ##27	ENSGT00950000182925.D.a.a.b.b ##27	ENSGT00390000004891	ENSGT00940000163673	ENSGT00940000162603	ENSGT00940000161062	ENSGT00950000183031.B.e.a
Rodentia	ANCESTRAL SPECIES	10	ENSGT00940000160128 #8	ENSGT00950000183061.a.a.a.a.b #9	ENSGT00940000153168.A #10	ENSGT00940000160157 #11	ENSGT00940000155516 #12	ENSGT00940000153259.a.a.a #13	ENSGT00940000154336.c.b #14	ENSGT00940000154336.c.a #15	ENSGT00940000158517 #16	ENSGT00940000163549 #17	ENSGT00390000001432 #18	ENSGT01090000260082.d.a.a.a.a #19	ENSGT00940000166548	ENSGT00390000014785 #20	ENSGT00940000159316 #21	ENSGT00390000018389 #22	ENSGT00940000153664.A.b.a #23	ENSGT00940000162717	ENSGT00940000153902.b #24	ENSGT00530000063529.B #25	ENSGT00940000154103.b #26	ENSGT00950000182925.D.a.b.a.b #27	ENSGT00940000162988 #28	ENSGT00940000166157	ENSGT00940000165111	ENSGT00950000182925.D.a.b.a.a.a.b ##27	ENSGT00390000004891	ENSGT00940000163673	ENSGT00940000162603	ENSGT00940000161062	ENSGT00950000183031.B.e.a
Rodentia_B	ANCESTRAL SPECIES	16	ENSGT00940000160128 #8	ENSGT00950000183061.a.a.a.a.b #9	ENSGT00940000153168.A #10	ENSGT00940000160157 #11	ENSGT00940000155516 #12	ENSGT00940000153259.a.a.a #13	ENSGT00940000154336.c.b #14	ENSGT00940000154336.c.a #15	ENSGT00940000158517 #16	ENSGT00940000163549 #17	ENSGT00390000001432 #18	ENSGT01090000260082.d.a.a.a.a #19	ENSGT00940000166548	ENSGT00390000014785 #20	ENSGT00940000159316 #21	ENSGT00390000018389 #22	ENSGT00940000153664.A.b.a #23	ENSGT00940000153902.b #24	ENSGT00530000063529.B #25	ENSGT00940000154103.b #26	ENSGT00950000182925.D.a.b.a.b #27	ENSGT00940000162988 #28	ENSGT00940000166157
Myomorpha	ANCESTRAL SPECIES	6	ENSGT00940000154585.b #7	ENSGT00940000160128 #8	ENSGT00950000183061.a.a.a.a.b #9	ENSGT00940000153168.A #10	ENSGT00940000160157 #11	ENSGT00940000155516 #12	ENSGT00940000153259.a.a.a #13	ENSGT00940000154336.c.b #14	ENSGT00940000154336.c.a #15	ENSGT00940000158517 #16	ENSGT00940000163549 #17	ENSGT00390000001432 #18	ENSGT01090000260082.d.a.a.a.a #19	ENSGT00390000014785 #20	ENSGT00940000159316 #21	ENSGT00390000018389 #22	ENSGT00940000153664.A.b.a #23	ENSGT00940000153902.b #24	ENSGT00530000063529.B #25	ENSGT00940000154103.b #26	ENSGT00950000182925.D.a.b.a.b #27	ENSGT00940000162988 #28	ENSGT00940000166157	ENSGT00940000163245 #29	ENSGT00940000162070 #30	ENSGT00890000139436.A.b	ENSGT00940000162496	ENSGT00980000198762	ENSGT00940000161236.a.a	ENSGT00940000159667	ENSGT00940000155614
Muroidea	ANCESTRAL SPECIES	50	ENSGT00940000154585.b #7	ENSGT00940000160128 #8	ENSGT00950000183061.a.a.a.a.b #9	ENSGT00940000153168.A #10	ENSGT00940000160157 #11	ENSGT00940000155516 #12	ENSGT00940000153259.a.a.a #13	ENSGT00940000154336.c.b #14	ENSGT00940000154336.c.a #15	ENSGT00940000158517 #16	ENSGT00940000163549 #17	ENSGT00390000001432 #18	ENSGT01090000260082.d.a.a.a.a #19	ENSGT00390000014785 #20	ENSGT00940000159316 #21	ENSGT00390000018389 #22	ENSGT00940000153664.A.b.a #23	ENSGT00940000153902.b #24	ENSGT00530000063529.B #25	ENSGT00940000154103.b #26	ENSGT00950000182925.D.a.b.a.b #27	ENSGT00940000166157	ENSGT00940000162988 #28	ENSGT00940000163245 #29	ENSGT00940000162070 #30
Muroidea_A	ANCESTRAL SPECIES	7	ENSGT00940000154585.b #7	ENSGT00940000160128 #8	ENSGT00950000183061.a.a.a.a.b #9	ENSGT00940000153168.A #10	ENSGT00940000160157 #11	ENSGT00940000155516 #12	ENSGT00940000153259.a.a.a #13	ENSGT00940000154336.c.b #14	ENSGT00940000154336.c.a #15	ENSGT00940000158517 #16	ENSGT00940000163549 #17	ENSGT00390000001432 #18	ENSGT01090000260082.d.a.a.a.a #19	ENSGT00390000014785 #20	ENSGT00940000159316 #21	ENSGT00390000018389 #22	ENSGT00940000153664.A.b.a #23	ENSGT00940000153902.b #24	ENSGT00530000063529.B #25	ENSGT00940000154103.b #26	ENSGT00950000182925.D.a.b.a.b #27	ENSGT00940000166157	ENSGT00940000162988 #28	ENSGT00940000163245 #29	ENSGT00940000162070 #30	ENSGT00530000063666.b #31	ENSGT00510000048637 #33	ENSGT00940000159116 #34	ENSGT00550000074801.g.b.d #35	ENSGT00940000158684 #36	ENSGT00390000013549.a.b.b
Murinae	ANCESTRAL SPECIES	14	ENSGT00940000154585.b #7	ENSGT00940000160128 #8	ENSGT00950000183061.a.a.a.a.b #9	ENSGT00940000153168.A #10	ENSGT00940000160157 #11	ENSGT00940000155516 #12	ENSGT00940000153259.a.a.a #13	ENSGT00940000154336.c.b #14	ENSGT00940000154336.c.a #15	ENSGT00940000158517 #16	ENSGT00940000163549 #17	ENSGT00390000001432 #18	ENSGT01090000260082.d.a.a.a.a #19	ENSGT00390000014785 #20	ENSGT00940000159316 #21	ENSGT00390000018389 #22	ENSGT00940000153664.A.b.a #23	ENSGT00940000153902.b #24	ENSGT00530000063529.B #25	ENSGT00940000154103.b #26	ENSGT00950000182925.D.a.b.a.b #27	ENSGT00940000162988 #28	ENSGT00940000163245 #29	ENSGT00940000162070 #30	ENSGT00530000063666.b #31	ENSGT00510000048637 #33	ENSGT00940000159116 #34	ENSGT00550000074801.g.a.e.b ##35	ENSGT00390000013132.j #37	ENSGT00390000013549.a.b.b	ENSGT01030000234646.B.a.b
Mus	ANCESTRAL SPECIES	9	ENSGT00940000154585.b #7	ENSGT00940000160128 #8	ENSGT00950000183061.a.a.a.a.b #9	ENSGT00940000153168.A #10	ENSGT00940000160157 #11	ENSGT00940000155516 #12	ENSGT00940000153259.a.a.a #13	ENSGT00940000154336.c.b #14	ENSGT00940000154336.c.a #15	ENSGT00940000158517 #16	ENSGT00940000163549 #17	ENSGT00390000001432 #18	ENSGT01090000260082.d.a.a.a.a #19	ENSGT00390000014785 #20	ENSGT00940000159316 #21	ENSGT00390000018389 #22	ENSGT00940000153664.A.b.a #23	ENSGT00940000153902.b #24	ENSGT00530000063529.B #25	ENSGT00940000154103.b #26	ENSGT00950000182925.D.a.b.a.b #27	ENSGT00940000162988 #28	ENSGT00940000163245 #29	ENSGT00940000162070 #30	ENSGT00530000063666.b #31	ENSGT00510000048637 #33	ENSGT00940000159116 #34	ENSGT00550000074801.g.a.e.b ##35	ENSGT00390000013549.a.b.b	ENSGT00390000013132.j #37	ENSGT01030000234646.B.a.b
Mus_A	ANCESTRAL SPECIES	15	ENSGT00940000154585.b #7	ENSGT00940000160128 #8	ENSGT00950000183061.a.a.a.a.b #9	ENSGT00940000153168.A #10	ENSGT00940000160157 #11	ENSGT00940000155516 #12	ENSGT00940000153259.a.a.a #13	ENSGT00940000154336.c.b #14	ENSGT00940000154336.c.a #15	ENSGT00940000158517 #16	ENSGT00940000163549 #17	ENSGT00390000001432 #18	ENSGT01090000260082.d.a.a.a.a #19	ENSGT00390000014785 #20	ENSGT00940000159316 #21	ENSGT00390000018389 #22	ENSGT00940000153664.A.b.a #23	ENSGT00940000153902.b #24	ENSGT00530000063529.B #25	ENSGT00940000154103.b #26	ENSGT00950000182925.D.a.b.a.b #27	ENSGT00940000162988 #28	ENSGT00940000163245 #29	ENSGT00940000162070 #30	ENSGT00530000063666.b #31	ENSGT00510000048637 #33	ENSGT00940000159116 #34	ENSGT00550000074801.g.b.d #35	ENSGT00940000158684 #36	ENSGT00390000013549.a.b.b	ENSGT00390000013132.j #37
Mus_B	ANCESTRAL SPECIES	14	ENSGT00940000154585.b #7	ENSGT00940000160128 #8	ENSGT00950000183061.a.a.a.a.b #9	ENSGT00940000153168.A #10	ENSGT00940000160157 #11	ENSGT00940000155516 #12	ENSGT00940000153259.a.a.a #13	ENSGT00940000154336.c.b #14	ENSGT00940000154336.c.a #15	ENSGT00940000158517 #16	ENSGT00940000163549 #17	ENSGT00390000001432 #18	ENSGT01090000260082.d.a.a.a.a #19	ENSGT00390000014785 #20	ENSGT00940000159316 #21	ENSGT00390000018389 #22	ENSGT00940000153664.A.b.a #23	ENSGT00940000153902.b #24	ENSGT00530000063529.B #25	ENSGT00940000154103.b #26	ENSGT00950000182925.D.a.b.a.b #27	ENSGT00940000162988 #28	ENSGT00940000163245 #29	ENSGT00940000162070 #30	ENSGT00530000063666.b #31	ENSGT00510000048637 #33	ENSGT00940000159116 #34	ENSGT00550000074801.g.b.d #35	ENSGT00940000158684 #36	ENSGT00390000013549.a.b.b	ENSGT00390000013132.j #37
Mouse	MODERN SPECIES	37	Pja1 (ENSMUSG00000034403) #7	Efnb1 (ENSMUSG00000031217) #8	Stard8 (ENSMUSG00000031216) #9	Yipf6 (ENSMUSG00000047694) #10	Ophn1 (ENSMUSG00000031214) #11	Ar (ENSMUSG00000046532) #12	Eda2r (ENSMUSG00000034457) #13	Pgr15l (ENSMUSG00000031212) #14	Gpr165 (ENSMUSG00000031210) #15	Heph (ENSMUSG00000031209) #16	Hsf3 (ENSMUSG00000045802) #17	Vsig4 (ENSMUSG00000044206) #18	Msn (ENSMUSG00000031207) #19	Las1l (ENSMUSG00000057421) #20	Zc3h12b (ENSMUSG00000035045) #21	Zc4h2 (ENSMUSG00000035062) #22	Pfn5 (ENSMUSG00000109858) #23	Asb12 (ENSMUSG00000031204) #24	Amer1 (ENSMUSG00000050332) #25	Arhgef9 (ENSMUSG00000025656) #26	Spin4 (ENSMUSG00000071722) #27	Zxdb (ENSMUSG00000073062) #28	Gspt2 (ENSMUSG00000071723) #29	Maged1 (ENSMUSG00000025151) #30	Apoo (ENSMUSG00000079508) #31	Fam90a1b (ENSMUSG00000043549) #32	Fam90a1b (ENSMUSG00000118554) #33	Klhl15 (ENSMUSG00000043929) #34	Eif2s3x (ENSMUSG00000035150) #35	Zfx (ENSMUSG00000079509) #36	AU015836 (ENSMUSG00000081044) #37
Mus_C	ANCESTRAL SPECIES	22	ENSGT00940000161362	ENSGT00940000154585.b #7	ENSGT00940000160128 #8	ENSGT00950000183061.a.a.a.a.b #9	ENSGT00940000153168.A #10	ENSGT00940000160157 #11	ENSGT00940000155516 #12	ENSGT00940000154336.c.b #14	ENSGT00940000154336.c.a #15	ENSGT00940000158517.y #16	ENSGT00940000163549 #17	ENSGT00390000001432 #18	ENSGT01090000260082.d.a.a.a.a #19	ENSGT00390000014785 #20	ENSGT00940000159316 #21	ENSGT00390000018389 #22	ENSGT00940000153664.A.b.a #23	ENSGT00530000063529.B #25	ENSGT00940000154103.b #26	ENSGT00950000182925.D.a.b.a.b #27	ENSGT00940000163245 #29	ENSGT00940000162070 #30	ENSGT00530000063666.b #31	ENSGT00510000048637 #33	ENSGT00910000144208.c #32	ENSGT00940000159116 #34	ENSGT00550000074801.g.a.e.b ##35	ENSGT00390000013549.a.b.b	ENSGT00390000013132.j #37	ENSGT01030000234646.B.a.b	ENSGT00940000156040
Steppe mouse	MODERN SPECIES	2316															ENSMSIG00000022707	Zc4h2 (ENSMSIG00000022726) #22	Pfn5 (ENSMSIG00000022764) #23
spretus	MODERN SPECIES	19	MGP_SPRETEiJ_G0034427 #7	Efnb1 (MGP_SPRETEiJ_G0034426) #8	Stard8 (MGP_SPRETEiJ_G0034425) #9	Yipf6 (MGP_SPRETEiJ_G0034424) #10	Ophn1 (MGP_SPRETEiJ_G0034423) #11	Ar (MGP_SPRETEiJ_G0034422) #12	Eda2r (MGP_SPRETEiJ_G0034421) #13	Pgr15l (MGP_SPRETEiJ_G0034420) #14	Gpr165 (MGP_SPRETEiJ_G0034419) #15	Heph (MGP_SPRETEiJ_G0034418) #16	MGP_SPRETEiJ_G0034417 #17	Vsig4 (MGP_SPRETEiJ_G0034416) #18	Msn (MGP_SPRETEiJ_G0034415) #19	Las1l (MGP_SPRETEiJ_G0034414) #20	Zc3h12b (MGP_SPRETEiJ_G0034413) #21	Zc4h2 (MGP_SPRETEiJ_G0034412) #22	MGP_SPRETEiJ_G0034411	MGP_SPRETEiJ_G0034410	Amer1 (MGP_SPRETEiJ_G0034409) #25	Arhgef9 (MGP_SPRETEiJ_G0034408) #26	Spin4 (MGP_SPRETEiJ_G0034407) #27	Gspt2 (MGP_SPRETEiJ_G0034406) #29	Maged1 (MGP_SPRETEiJ_G0034405) #30	Apoo (MGP_SPRETEiJ_G0034404) #31	Fam90a1b (MGP_SPRETEiJ_G0034403) #32	Klhl15 (MGP_SPRETEiJ_G0034402) #34	MGP_SPRETEiJ_G0034401 ##35	MGP_SPRETEiJ_G0034400	AU015836 (MGP_SPRETEiJ_G0034399) #37	Pdk3 (MGP_SPRETEiJ_G0034398)	Pcyt1b (MGP_SPRETEiJ_G0034397)
Ryukyu mouse	MODERN SPECIES	19	Stard8 (MGP_CAROLIEiJ_G0033261) #9	Yipf6 (MGP_CAROLIEiJ_G0033260) #10	Ophn1 (MGP_CAROLIEiJ_G0033259) #11	Ar (MGP_CAROLIEiJ_G0033258) #12	Eda2r (MGP_CAROLIEiJ_G0033257) #13	Pgr15l (MGP_CAROLIEiJ_G0033256) #14	MGP_CAROLIEiJ_G0033255	Gpr165 (MGP_CAROLIEiJ_G0033254) #15	Heph (MGP_CAROLIEiJ_G0033253) #16	Hsf3 (MGP_CAROLIEiJ_G0033252) #17	Vsig4 (MGP_CAROLIEiJ_G0033251) #18	Msn (MGP_CAROLIEiJ_G0033250) #19	Las1l (MGP_CAROLIEiJ_G0033249) #20	MGP_CAROLIEiJ_G0033248	MGP_CAROLIEiJ_G0033247	Zc4h2 (MGP_CAROLIEiJ_G0033246) #22	Asb12 (MGP_CAROLIEiJ_G0033245) #24	Amer1 (MGP_CAROLIEiJ_G0033244) #25	MGP_CAROLIEiJ_G0033243	MGP_CAROLIEiJ_G0033242 #26	Spin4 (MGP_CAROLIEiJ_G0033241) #27	MGP_CAROLIEiJ_G0033240 #28	Gspt2 (MGP_CAROLIEiJ_G0033239) #29	Maged1 (MGP_CAROLIEiJ_G0033238) #30	Apoo (MGP_CAROLIEiJ_G0033237) #31	Fam90a1b (MGP_CAROLIEiJ_G0033236) #32	Klhl15 (MGP_CAROLIEiJ_G0033235) #34	MGP_CAROLIEiJ_G0033234 #35	Zfx (MGP_CAROLIEiJ_G0033233) #36	AU015836 (MGP_CAROLIEiJ_G0033232) #37	Pdk3 (MGP_CAROLIEiJ_G0033231)
Shrew mouse	MODERN SPECIES	23	Pja1 (MGP_PahariEiJ_G0031801) #7	Efnb1 (MGP_PahariEiJ_G0031800) #8	Stard8 (MGP_PahariEiJ_G0031799) #9	Yipf6 (MGP_PahariEiJ_G0031798) #10	Ophn1 (MGP_PahariEiJ_G0031797) #11	Ar (MGP_PahariEiJ_G0031796) #12	Eda2r (MGP_PahariEiJ_G0031795) #13	Pgr15l (MGP_PahariEiJ_G0031794) #14	Gpr165 (MGP_PahariEiJ_G0031793) #15	Heph (MGP_PahariEiJ_G0031792) #16	Hsf3 (MGP_PahariEiJ_G0031791) #17	Vsig4 (MGP_PahariEiJ_G0031790) #18	Msn (MGP_PahariEiJ_G0031789) #19	Las1l (MGP_PahariEiJ_G0031788) #20	Zc3h12b (MGP_PahariEiJ_G0031787) #21	Zc4h2 (MGP_PahariEiJ_G0031786) #22	Asb12 (MGP_PahariEiJ_G0031785) #24	MGP_PahariEiJ_G0031784 #25	Arhgef9 (MGP_PahariEiJ_G0031783) #26	Spin4 (MGP_PahariEiJ_G0031782) #27	Zxdb (MGP_PahariEiJ_G0031781) #28	Gspt2 (MGP_PahariEiJ_G0031780) #29	Maged1 (MGP_PahariEiJ_G0031779) #30	Apoo (MGP_PahariEiJ_G0031778) #31	Fam90a1b (MGP_PahariEiJ_G0031777) #32	Klhl15 (MGP_PahariEiJ_G0031776) #34	Eif2s3x (MGP_PahariEiJ_G0031775) #35	AU015836 (MGP_PahariEiJ_G0031774) #37	Pdk3 (MGP_PahariEiJ_G0031773)	Pcyt1b (MGP_PahariEiJ_G0031772)	Pola1 (MGP_PahariEiJ_G0031771)
Rat	MODERN SPECIES	46	Ophn1 (ENSRNOG00000026573) #11	Ar (ENSRNOG00000005639) #12	Eda2r (ENSRNOG00000013018) #13	RGD1565058 (ENSRNOG00000042779)	Pgr15l (ENSRNOG00000021547) #14	Gpr165 (ENSRNOG00000012995) #15	Heph (ENSRNOG00000012294) #16	LOC100360790 (ENSRNOG00000021694) #17	Vsig4 (ENSRNOG00000038132) #18	ENSRNOG00000070436	Msn (ENSRNOG00000030118) #19	Las1l (ENSRNOG00000021748) #20	Zc3h12b (ENSRNOG00000011508) #21	AABR07038957.1 (ENSRNOG00000054638)	Got2-ps6 (ENSRNOG00000057091)	Zc4h2 (ENSRNOG00000056735) #22	LOC102551431 (ENSRNOG00000066828) #23	Asb12 (ENSRNOG00000004197) #24	Amer1 (ENSRNOG00000007984) #25	Arhgef9 (ENSRNOG00000007733) #26	Spin4 (ENSRNOG00000038169) #27	Gmcl1-ps1 (ENSRNOG00000057644)	LOC120099132 (ENSRNOG00000067786) #28	Zxdb (ENSRNOG00000070035) #28	Gspt2 (ENSRNOG00000048817) #29	LOC102551035 (ENSRNOG00000029935)	Maged1 (ENSRNOG00000006756) #30	Apoo (ENSRNOG00000046918) #31	LOC685700 (ENSRNOG00000051365) #33	Klhl15 (ENSRNOG00000006515) #34	Eif2s3 (ENSRNOG00000060793) #35
Cricetidae	ANCESTRAL SPECIES	8	ENSGT00940000154585.b #7	ENSGT00940000160128 #8	ENSGT00950000183061.a.a.a.a.b #9	ENSGT00940000153168.A #10	ENSGT00940000160157 #11	ENSGT00940000155516 #12	ENSGT00940000153259.a.a.a #13	ENSGT00940000154336.c.b #14	ENSGT00940000154336.c.a #15	ENSGT00940000158517 #16	ENSGT00940000163549 #17	ENSGT00390000001432 #18	ENSGT01090000260082.d.a.a.a.a #19	ENSGT00390000014785 #20	ENSGT00940000159316 #21	ENSGT00390000018389 #22	ENSGT00940000153664.A.b.a #23	ENSGT00940000153902.b #24	ENSGT00530000063529.B #25	ENSGT00940000154103.b #26	ENSGT00950000182925.D.a.b.a.b #27	ENSGT00940000163245 #29	ENSGT00940000162070 #30	ENSGT00530000063666.b #31	ENSGT00510000048637 #33	ENSGT00940000159116 #34	ENSGT00550000074801.g.b.d #35	ENSGT00940000158684 #36	ENSGT00390000013549.a.b.b	ENSGT00390000013132.j #37	ENSGT01030000234646.B.a.b
Cricetidae_B	ANCESTRAL SPECIES	54	ENSGT00940000154585.b #7	ENSGT00940000160128 #8	ENSGT00950000183061.a.a.a.a.b #9	ENSGT00940000153168.A #10	ENSGT00940000160157 #11	ENSGT00940000155516 #12	ENSGT00940000153259.a.a.a #13	ENSGT00940000154336.c.b #14	ENSGT00940000154336.c.a #15	ENSGT00940000158517 #16	ENSGT00940000163549 #17	ENSGT00390000001432 #18	ENSGT01090000260082.d.a.a.a.a #19	ENSGT00390000014785 #20	ENSGT00940000159316 #21	ENSGT00390000018389 #22	ENSGT00940000153664.A.b.a #23	ENSGT00940000153902.b #24	ENSGT00530000063529.B #25	ENSGT00940000154103.b #26	ENSGT00950000182925.D.a.b.a.b #27
Northern American deer mouse	MODERN SPECIES	475	ENSPEMG00000024504	Ar (ENSPEMG00000000264) #12	ENSPEMG00000024572	Eda2r (ENSPEMG00000010048) #13	Pgr15l (ENSPEMG00000011660) #14	ENSPEMG00000029584	Gpr165 (ENSPEMG00000027719) #15	Heph (ENSPEMG00000000424) #16	Hsf3 (ENSPEMG00000001674) #17	ENSPEMG00000028906	Vsig4 (ENSPEMG00000005797) #18	Msn (ENSPEMG00000014831) #19	Las1l (ENSPEMG00000001210) #20	Zc3h12b (ENSPEMG00000030441) #21	ENSPEMG00000031140	Zc4h2 (ENSPEMG00000026603) #22	Pfn5 (ENSPEMG00000030788) #23	Asb12 (ENSPEMG00000000256) #24	Amer1 (ENSPEMG00000012693) #25	Arhgef9 (ENSPEMG00000012933) #26	Spin4 (ENSPEMG00000002526) #27	ENSPEMG00000025830	ENSPEMG00000026975	Mageb11 (ENSPEMG00000008903)	ENSPEMG00000012007	ENSPEMG00000010674	ENSPEMG00000030119	ENSPEMG00000007699	ENSPEMG00000030666	Mageb18 (ENSPEMG00000009168)	ENSPEMG00000029908
Prairie vole	MODERN SPECIES	195														Las1l (ENSMOCG00000019612) #20	Zc3h12b (ENSMOCG00000000094) #21	Zc4h2 (ENSMOCG00000000355) #22	Asb12 (ENSMOCG00000010382) #24	Amer1 (ENSMOCG00000001224) #25	Arhgef9 (ENSMOCG00000015844) #26	Spin4 (ENSMOCG00000022604) #27	ENSMOCG00000007939
Cricetinae	ANCESTRAL SPECIES	17	ENSGT00900000143655	ENSGT00940000160128 #8	ENSGT00950000183061.a.a.a.a.b #9	ENSGT00940000153168.A #10	ENSGT00940000160157 #11	ENSGT00940000155516 #12	ENSGT00940000153259.a.a.a #13	ENSGT00940000154336.c.b #14	ENSGT00940000154336.c.a #15	ENSGT00940000158517 #16	ENSGT00940000163549 #17	ENSGT00390000001432 #18	ENSGT01090000260082.d.a.a.a.a #19	ENSGT00390000014785 #20	ENSGT00940000159316 #21	ENSGT00390000018389 #22	ENSGT00940000153902.b #24	ENSGT00530000063529.B #25	ENSGT00940000154103.b #26	ENSGT00950000182925.D.a.b.a.b #27	ENSGT00940000163245 #29	ENSGT00940000162070 #30	ENSGT00530000063666.b #31	ENSGT00910000144208.c #32	ENSGT00940000159116 #34	ENSGT00550000074801.g.b.d #35	ENSGT00940000158684 #36	ENSGT00550000074801.g.a.e.b ##35	ENSGT00390000013132.j #37	ENSGT01030000234646.B.a.b	ENSGT00940000156040
Golden Hamster	MODERN SPECIES	727	Pja1 (ENSMAUG00000021969) #7	ENSMAUG00000010856	Efnb1 (ENSMAUG00000019581) #8	Stard8 (ENSMAUG00000008744) #9	Ophn1 (ENSMAUG00000000560) #11	Ar (ENSMAUG00000001501) #12	ENSMAUG00000012150	Eda2r (ENSMAUG00000008260) #13	Gpr165 (ENSMAUG00000004553) #15	Heph (ENSMAUG00000008450) #16	Hsf3 (ENSMAUG00000013538) #17	Vsig4 (ENSMAUG00000021950) #18	Msn (ENSMAUG00000006616) #19	Las1l (ENSMAUG00000012113) #20	Zc3h12b (ENSMAUG00000017800) #21	Zc4h2 (ENSMAUG00000016038) #22	Asb12 (ENSMAUG00000020593) #24	Amer1 (ENSMAUG00000020197) #25	ENSMAUG00000001213	Arhgef9 (ENSMAUG00000000943) #26	Spin4 (ENSMAUG00000002658) #27	Maged1 (ENSMAUG00000011809) #30	Apoo (ENSMAUG00000009452) #31
Chinese hamster chok1gshd	MODERN SPECIES	33	Mageb18 (ENSCGRG00001008641)	ENSCGRG00001016896	Mageb11 (ENSCGRG00001009688)	ENSCGRG00001002365	Dcaf8l (ENSCGRG00001010085)	Il1rapl1 (ENSCGRG00001011305)	ENSCGRG00001012714	Nr0b1 (ENSCGRG00001023306)	Tasl (ENSCGRG00001024295)	Gk (ENSCGRG00001012921)	Tab3 (ENSCGRG00001020007)	ENSCGRG00001016935	Fthl17a (ENSCGRG00001004869)	ENSCGRG00001021223	ENSCGRG00001018722	Zc4h2 (ENSCGRG00001023095) #22	Zc3h12b (ENSCGRG00001018643) #21	Las1l (ENSCGRG00001023388) #20	ENSCGRG00001000800	Msn (ENSCGRG00001024846) #19	Vsig4 (ENSCGRG00001003428) #18	Hsf3 (ENSCGRG00001022240) #17	Heph (ENSCGRG00001020044) #16	Gpr165 (ENSCGRG00001000577) #15	Pgr15l (ENSCGRG00001024706) #14	Eda2r (ENSCGRG00001002185) #13	ENSCGRG00001012004 #12	ENSCGRG00001020174 #12	Ophn1 (ENSCGRG00001024034) #11	Yipf6 (ENSCGRG00001024929) #10	Stard8 (ENSCGRG00001012866) #9
Upper Galilee mountains blind mole rat	MODERN SPECIES	1263	Pja1 (ENSNGAG00000023580) #7	Efnb1 (ENSNGAG00000023292) #8	Stard8 (ENSNGAG00000021823) #9	Yipf6 (ENSNGAG00000015569) #10	Ophn1 (ENSNGAG00000022814) #11	ENSNGAG00000001772 #12	ENSNGAG00000023586 #12	Eda2r (ENSNGAG00000020621) #13	Pgr15l (ENSNGAG00000017900) #14	Gpr165 (ENSNGAG00000013805) #15	Heph (ENSNGAG00000014739) #16	Hsf3 (ENSNGAG00000014517) #17	Msn (ENSNGAG00000018984) #19	Las1l (ENSNGAG00000015256) #20	ENSNGAG00000001158	Zc4h2 (ENSNGAG00000021684) #22	ENSNGAG00000013890	Amer1 (ENSNGAG00000010278) #25	Asb12 (ENSNGAG00000023819) #24
Lesser Egyptian jerboa	MODERN SPECIES	80	ENSJJAG00000014096 #11	ENSJJAG00000017196 #12	ENSJJAG00000023447 #12	ENSJJAG00000016187	ENSJJAG00000023290	Eda2r (ENSJJAG00000011031) #13	Heph (ENSJJAG00000011624) #16	Msn (ENSJJAG00000018702) #19	ENSJJAG00000009736	ENSJJAG00000007483	Las1l (ENSJJAG00000015634) #20	Zc3h12b (ENSJJAG00000015755) #21	ENSJJAG00000014273	ENSJJAG00000011017	ENSJJAG00000011514	Zc4h2 (ENSJJAG00000023338) #22	Asb12 (ENSJJAG00000024100) #24	ENSJJAG00000023059	Arhgef9 (ENSJJAG00000009447) #26	Spin4 (ENSJJAG00000008548) #27	Zxdb (ENSJJAG00000014676) #28	Gspt2 (ENSJJAG00000000985) #29	ENSJJAG00000019689	Maged1 (ENSJJAG00000008793) #30	Gpr173 (ENSJJAG00000005573)	Tspyl2 (ENSJJAG00000021239)	Kdm5c (ENSJJAG00000013385)	Iqsec2 (ENSJJAG00000012417)	Dock2 (ENSJJAG00000005958)	Insyn2b (ENSJJAG00000019989)	Spdl1 (ENSJJAG00000012981)
Kangaroo rat	MODERN SPECIES	504						Eda2r (ENSDORG00000009069) #13	Pgr15l (ENSDORG00000026395) #14	Gpr165 (ENSDORG00000029067) #15	Heph (ENSDORG00000003982) #16	ENSDORG00000027164	Vsig4 (ENSDORG00000001232) #18	Msn (ENSDORG00000016668) #19	ENSDORG00000023763	Las1l (ENSDORG00000001130) #20	Zc3h12b (ENSDORG00000024832) #21	Zc4h2 (ENSDORG00000014468) #22	ENSDORG00000012364	Asb12 (ENSDORG00000029329) #24	Amer1 (ENSDORG00000027620) #25	Arhgef9 (ENSDORG00000010147) #26	Spin4 (ENSDORG00000029504) #27
Rodentia_A	ANCESTRAL SPECIES	9	ENSGT00940000160128 #8	ENSGT00950000183061.a.a.a.a.b #9	ENSGT00940000153168.A #10	ENSGT00940000160157 #11	ENSGT00940000155516 #12	ENSGT00940000153259.a.a.a #13	ENSGT00940000154336.c.b #14	ENSGT00940000154336.c.a #15	ENSGT00940000158517 #16	ENSGT00940000163549 #17	ENSGT00390000001432 #18	ENSGT01090000260082.d.a.a.a.a #19	ENSGT00940000166548	ENSGT00390000014785 #20	ENSGT00940000159316 #21	ENSGT00390000018389 #22	ENSGT00940000153664.A.b.a #23	ENSGT00940000162717	ENSGT00940000153902.b #24	ENSGT00530000063529.B #25	ENSGT00940000154103.b #26	ENSGT00950000182925.D.a.b.a.b #27	ENSGT00940000162988 #28	ENSGT00950000182925.D.a.b.a.a.a.b ##27	ENSGT00390000004891	ENSGT00940000163673	ENSGT00940000162603	ENSGT00940000161062	ENSGT00950000183031.B.e.a	ENSGT00940000162993	ENSGT00840000130063
Sciuridae	ANCESTRAL SPECIES	35	ENSGT00950000183061.a.a.a.a.b #9	ENSGT00940000153168.A #10	ENSGT00940000160157 #11	ENSGT00940000155516 #12	ENSGT00940000153259.a.a.a #13	ENSGT00940000154336.c.b #14	ENSGT00940000154336.c.a #15	ENSGT00940000158517 #16	ENSGT00940000163549 #17	ENSGT00390000001432 #18	ENSGT01090000260082.d.a.a.a.a #19	ENSGT00940000166548	ENSGT00390000014785 #20	ENSGT00940000159316 #21	ENSGT01050000244818	ENSGT00390000018389 #22	ENSGT00940000153664.A.b.a #23	ENSGT00940000162717	ENSGT00940000153902.b #24	ENSGT00530000063529.B #25	ENSGT00940000154103.b #26	ENSGT00940000164144	ENSGT00950000182925.D.a.b.a.b #27
Marmotini	ANCESTRAL SPECIES	66	ENSGT00940000153168.A #10	ENSGT00940000160157 #11	ENSGT00940000155516 #12	ENSGT00940000153259.a.a.a #13	ENSGT00940000154336.c.b #14	ENSGT00940000154336.c.a #15	ENSGT00940000158517 #16	ENSGT00940000163549 #17	ENSGT00390000001432 #18	ENSGT01090000260082.d.a.a.a.a #19	ENSGT00390000008496.x.a.b	ENSGT00940000166548	ENSGT00390000014785 #20	ENSGT00940000159316 #21	ENSGT01050000244818.n	ENSGT00390000018389 #22	ENSGT00940000153664.A.b.a #23	ENSGT00940000162717	ENSGT00940000153902.b #24	ENSGT00530000063529.B #25	ENSGT00940000154103.b #26	ENSGT00940000164144	ENSGT00950000182925.D.a.b.a.b #27	ENSGT00940000166157
Marmotini_b	ANCESTRAL SPECIES	98	ENSGT00950000183061.a.a.a.a.b #9	ENSGT00940000153168.A #10	ENSGT00940000160157 #11	ENSGT00940000155516 #12	ENSGT00940000153259.a.a.a #13	ENSGT00940000154336.c.b #14	ENSGT00940000154336.c.a #15	ENSGT00940000158517 #16	ENSGT00940000163549 #17	ENSGT00390000001432 #18	ENSGT01090000260082.d.a.a.a.a #19	ENSGT00390000008496.x.a.b	ENSGT00940000166548	ENSGT00390000014785 #20	ENSGT00940000159316 #21	ENSGT00390000018389 #22	ENSGT00940000153664.A.b.a #23	ENSGT00940000162717	ENSGT00940000153902.b #24	ENSGT00530000063529.B #25	ENSGT00940000154103.b #26	ENSGT00940000164144	ENSGT00950000182925.D.a.b.a.b #27	ENSGT00940000166157
Squirrel	MODERN SPECIES	235			OPHN1 (ENSSTOG00000013156) #11	AR (ENSSTOG00000021280) #12	EDA2R (ENSSTOG00000008369) #13	ENSSTOG00000022372 #14	ENSSTOG00000028241 #15	HEPH (ENSSTOG00000015310) #16	ENSSTOG00000021693 #17	VSIG4 (ENSSTOG00000002679) #18	MSN (ENSSTOG00000013341) #19	ENSSTOG00000033332	ENSSTOG00000023106	LAS1L (ENSSTOG00000028104) #20	ZC3H12B (ENSSTOG00000020962) #21	ZC4H2 (ENSSTOG00000020812) #22	ENSSTOG00000022000 #23	MTMR8 (ENSSTOG00000025360)	ASB12 (ENSSTOG00000022386) #24	AMER1 (ENSSTOG00000014141) #25	ARHGEF9 (ENSSTOG00000026917) #26	ENSSTOG00000020597	SPIN4 (ENSSTOG00000020490) #27
Arctic ground squirrel	MODERN SPECIES	950																ZC4H2 (ENSUPAG00010001830) #22
Alpin marmot	MODERN SPECIES	74	ENSMMMG00000022173	ENSMMMG00000022177	AR (ENSMMMG00000022192) #12	EDA2R (ENSMMMG00000022202) #13	ENSMMMG00000022207 #14	ENSMMMG00000022208 #15	HEPH (ENSMMMG00000022210) #16	ENSMMMG00000022240 #17	VSIG4 (ENSMMMG00000022254) #18	ENSMMMG00000022266	ENSMMMG00000022267 #19	ENSMMMG00000022273	LAS1L (ENSMMMG00000022275) #20	ZC3H12B (ENSMMMG00000022296) #21	ENSMMMG00000022301	ZC4H2 (ENSMMMG00000022307) #22	ENSMMMG00000022311	ENSMMMG00000022313	ENSMMMG00000022323 #23	MTMR8 (ENSMMMG00000022325)	ASB12 (ENSMMMG00000022346) #24	AMER1 (ENSMMMG00000022350) #25	ARHGEF9 (ENSMMMG00000022355) #26	SPIN4 (ENSMMMG00000022570) #27
Eurasian red squirrel	MODERN SPECIES	156	ENSSVLG00005019406	ENSSVLG00005019524 #14	ENSSVLG00005019595	ENSSVLG00005019660 #15	HEPH (ENSSVLG00005019774) #16	VSIG4 (ENSSVLG00005020025) #18	ENSSVLG00005020115	ENSSVLG00005020160	MSN (ENSSVLG00005020199) #19	ENSSVLG00005020269	ENSSVLG00005020314 #20	ZC3H12B (ENSSVLG00005020578) #21	ENSSVLG00005020634	ENSSVLG00005020675	ENSSVLG00005020704	ZC4H2 (ENSSVLG00005020732) #22	ENSSVLG00005020783	ENSSVLG00005020905 #23	MTMR8 (ENSSVLG00005020958)	ENSSVLG00005021103 #24	AMER1 (ENSSVLG00005021139) #25	ENSSVLG00005021158	ENSSVLG00005021257	ARHGEF9 (ENSSVLG00005021404) #26	SPIN4 (ENSSVLG00005021964) #27	ENSSVLG00005021975	ENSSVLG00005021992	ENSSVLG00005022009	ENSSVLG00005022025	ENSSVLG00005022061	ENSSVLG00005022080
Hystricomorpha	ANCESTRAL SPECIES	11	ENSGT00940000161362	ENSGT00940000154585.b #7	ENSGT00940000160128 #8	ENSGT00950000183061.a.a.a.a.b #9	ENSGT00940000153168.A #10	ENSGT00940000160157 #11	ENSGT00940000155516 #12	ENSGT00940000153259.a.a.a #13	ENSGT00940000154336.c.a #15	ENSGT00940000158517 #16	ENSGT00940000163549 #17	ENSGT00390000001432 #18	ENSGT01090000260082.d.a.a.a.a #19	ENSGT00390000014785 #20	ENSGT00940000159316 #21	ENSGT00390000018389 #22	ENSGT00940000153664.A.b.a #23	ENSGT00940000153902.b #24	ENSGT00530000063529.B #25	ENSGT00940000154103.b #26	ENSGT00950000182925.D.a.b.a.b #27	ENSGT00940000162988 #28	ENSGT00940000162502	ENSGT00950000182925.D.a.b.a.a.b ##27	ENSGT00390000004891	ENSGT00940000162603	ENSGT00940000161062	ENSGT00950000183031.B.e.a	ENSGT00940000159912	ENSGT00530000063540.a	ENSGT00950000182835.c.c
Naked mole-rat female	MODERN SPECIES	31	ENSHGLG00000036194	HEPH (ENSHGLG00000001643) #16	ENSHGLG00000007957 #17	ENSHGLG00000019568	ENSHGLG00000044766	VSIG4 (ENSHGLG00000011027) #18	MSN (ENSHGLG00000001737) #19	ENSHGLG00000049705	ENSHGLG00000002770 #20	ENSHGLG00000044476 #20	ENSHGLG00000003107 #21	ENSHGLG00000020196	ENSHGLG00000037523	ENSHGLG00000046360	ENSHGLG00000042114	ENSHGLG00000005578 #22	ENSHGLG00000019822 #23	ASB12 (ENSHGLG00000000583) #24	AMER1 (ENSHGLG00000020357) #25	ENSHGLG00000043636	ARHGEF9 (ENSHGLG00000002050) #26	SPIN4 (ENSHGLG00000034676) #27	ENSHGLG00000045579	ENSHGLG00000001021	ENSHGLG00000000991 ##27	ENSHGLG00000050802 ##27	NBDY (ENSHGLG00000049275)	ENSHGLG00000000962	UBQLN2 (ENSHGLG00000020145)	ENSHGLG00000037038	ENSHGLG00000000922
Hystricomorpha_a	ANCESTRAL SPECIES	51	ENSGT00940000161362	ENSGT00940000154585.b #7	ENSGT00940000160128 #8	ENSGT00950000183061.a.a.a.a.b #9	ENSGT00940000153168.A #10	ENSGT00940000160157 #11	ENSGT00940000155516 #12	ENSGT00940000153259.a.a.a #13	ENSGT00940000154336.c.a #15	ENSGT00940000158517 #16	ENSGT00940000163549 #17	ENSGT00390000001432 #18	ENSGT01090000260082.d.a.a.a.a #19	ENSGT00390000014785 #20	ENSGT00940000159316 #21	ENSGT00390000018389 #22	ENSGT00940000153664.A.b.a #23	ENSGT00530000063529.B #25	ENSGT00940000153902.b #24	ENSGT00940000154103.b #26	ENSGT00950000182925.D.a.b.a.b #27	ENSGT00940000162988 #28	ENSGT00940000162502	ENSGT00950000182925.D.a.b.a.a.b ##27	ENSGT00390000004891	ENSGT00940000162603	ENSGT00940000161062	ENSGT00950000183031.B.e.a	ENSGT00940000159912	ENSGT00530000063540.a	ENSGT00950000182835.c.c
Guinea pig	DUPLICATION
Guinea pig	MODERN SPECIES	122										EDA2R (ENSCPOG00000012156) #13	HEPH (ENSCPOG00000014821) #16	ENSCPOG00000022752 #17	MSN (ENSCPOG00000007103) #19	LAS1L (ENSCPOG00000014261) #20	ENSCPOG00000030973	ENSCPOG00000019721 #22	ENSCPOG00000025026 #23	AMER1 (ENSCPOG00000007668) #25	ASB12 (ENSCPOG00000007670) #24	ARHGEF9 (ENSCPOG00000015150) #26	SPIN4 (ENSCPOG00000000975) #27	EFNB1 (ENSCPOG00000038836) #8
Guinea pig	MODERN SPECIES	3	FKBP7 (ENSCPOG00000037159)	PLEKHA3 (ENSCPOG00000003906)	ENSCPOG00000036479	ENSCPOG00000034673	ENSCPOG00000038729	ENSCPOG00000030784	ENSCPOG00000032370	CCDC141 (ENSCPOG00000003955)	ENSCPOG00000025835	ZNF385B (ENSCPOG00000014985)	ENSCPOG00000007492	UBE2E3 (ENSCPOG00000006996)	ITGA4 (ENSCPOG00000009479)	ENSCPOG00000009493	NEUROD1 (ENSCPOG00000025248)	ENSCPOG00000031598 #22	ITPRID2 (ENSCPOG00000025723)	PPP1R1C (ENSCPOG00000001191)	PDE1A (ENSCPOG00000004164)	DNAJC10 (ENSCPOG00000012956)	FRZB (ENSCPOG00000015013)	NCKAP1 (ENSCPOG00000011890)	DUSP19 (ENSCPOG00000035035)	NUP35 (ENSCPOG00000011906)	ENSCPOG00000034399	ZNF804A (ENSCPOG00000007581)	ZC3H15 (ENSCPOG00000012965)	ITGAV (ENSCPOG00000015367)	FAM171B (ENSCPOG00000037168)	ZSWIM2 (ENSCPOG00000000441)	CALCRL (ENSCPOG00000001012)
Hystricomorpha_b	ANCESTRAL SPECIES	74	ENSGT00940000154585.b #7	ENSGT00940000160128 #8	ENSGT00950000183061.a.a.a.a.b #9	ENSGT00940000153168.A #10	ENSGT00940000160157 #11	ENSGT00940000155516 #12	ENSGT00390000012078.b	ENSGT00940000156229	ENSGT00940000153259.a.a.a #13	ENSGT00940000154336.c.a #15	ENSGT00940000158517 #16	ENSGT00390000001432 #18	ENSGT01090000260082.d.a.a.a.a #19	ENSGT00390000014785 #20	ENSGT00940000159316 #21	ENSGT00390000018389 #22	ENSGT00530000063529.B #25	ENSGT00940000153902.b #24	ENSGT00940000154103.b #26	ENSGT00950000182925.D.a.b.a.b #27	ENSGT00940000162988 #28	ENSGT00940000162502	ENSGT00950000182925.D.a.b.a.a.b ##27	ENSGT00390000004891	ENSGT00940000162603	ENSGT00940000161062	ENSGT00950000183031.B.e.a	ENSGT00940000159912	ENSGT00530000063540.a	ENSGT00950000182835.c.c	ENSGT00940000162763
Long-tailed chinchilla	MODERN SPECIES	182	ENSCLAG00000008675	PJA1 (ENSCLAG00000005562) #7	EFNB1 (ENSCLAG00000005240) #8	STARD8 (ENSCLAG00000005156) #9	YIPF6 (ENSCLAG00000003771) #10	OPHN1 (ENSCLAG00000007376) #11	AR (ENSCLAG00000009155) #12	EDA2R (ENSCLAG00000008498) #13	ENSCLAG00000005489 #15	ENSCLAG00000004929	HEPH (ENSCLAG00000004016) #16	VSIG4 (ENSCLAG00000003308) #18	MSN (ENSCLAG00000008770) #19	LAS1L (ENSCLAG00000006717) #20	ZC3H12B (ENSCLAG00000003600) #21	ZC4H2 (ENSCLAG00000002934) #22	ENSCLAG00000007927	AMER1 (ENSCLAG00000017657) #25	ASB12 (ENSCLAG00000006178) #24	ARHGEF9 (ENSCLAG00000004407) #26	SPIN4 (ENSCLAG00000017570) #27	FAAH2 (ENSCLAG00000003768)	ENSCLAG00000003441 ##27	ENSCLAG00000003312	NBDY (ENSCLAG00000017820)	UBQLN2 (ENSCLAG00000017708)	KLF8 (ENSCLAG00000005236)	RRAGB (ENSCLAG00000003913)	ALAS2 (ENSCLAG00000003042)	APEX2 (ENSCLAG00000017315)	PFKFB1 (ENSCLAG00000009234)
Degu	DUPLICATION
Degu	MODERN SPECIES	252							ENSODEG00000002660 #15	ENSODEG00000002647	HEPH (ENSODEG00000003182) #16	MSN (ENSODEG00000003097) #19	ENSODEG00000003056	LAS1L (ENSODEG00000003001) #20	ENSODEG00000002977	ENSODEG00000018885	ENSODEG00000002966	ZC4H2 (ENSODEG00000002954) #22	ENSODEG00000018865	ASB12 (ENSODEG00000002937) #24	ENSODEG00000002930	ENSODEG00000002920	ARHGEF9 (ENSODEG00000002707) #26	SPIN4 (ENSODEG00000018809) #27	ENSODEG00000002601 #28	ENSODEG00000002584	FAAH2 (ENSODEG00000002562)	ENSODEG00000004091 ##27	UBQLN2 (ENSODEG00000004078)	ENSODEG00000004065	ENSODEG00000019014
Degu	MODERN SPECIES	42	SETD9 (ENSODEG00000016730)	MAP3K1 (ENSODEG00000017328)	ANKRD55 (ENSODEG00000017209)	ENSODEG00000016853	IL6ST (ENSODEG00000016916)	IL31RA (ENSODEG00000017222)	ENSODEG00000016951	ENSODEG00000017023	ENSODEG00000017001	PLPP1 (ENSODEG00000017162)	MTREX (ENSODEG00000017234)	ENSODEG00000017015	DHX29 (ENSODEG00000017600)	CCNO (ENSODEG00000017316)	MCIDAS (ENSODEG00000017218)	ENSODEG00000017028 #22	ENSODEG00000017436	ENSODEG00000017117	GPX8 (ENSODEG00000017190)	GZMA (ENSODEG00000017144)	GZMK (ENSODEG00000017261)	ESM1 (ENSODEG00000017112)	ENSODEG00000017166	HSPB3 (ENSODEG00000020433)	ENSODEG00000017228	ENSODEG00000017434	ENSODEG00000017242	NDUFS4 (ENSODEG00000017447)	FST (ENSODEG00000018012)	MOCS2 (ENSODEG00000017456)	ITGA2 (ENSODEG00000017422)
Lagomorpha	ANCESTRAL SPECIES	40	ENSGT00940000160128 #8	ENSGT00950000183061.a.a.a.a.b #9	ENSGT00940000153168.A #10	ENSGT00940000160157 #11	ENSGT00940000155516 #12	ENSGT00940000153259.a.a.a #13	ENSGT00940000154336.c.b #14	ENSGT00940000154336.c.a #15	ENSGT00940000158517 #16	ENSGT00940000163549 #17	ENSGT00390000001432 #18	ENSGT01090000260082.d.a.a.a.a #19	ENSGT00940000166548	ENSGT00390000014785 #20	ENSGT00940000159316 #21	ENSGT00390000018389 #22	ENSGT00940000153664.A.b.a #23	ENSGT00940000162717	ENSGT00940000153902.b #24	ENSGT00530000063529.B #25	ENSGT00940000154103.b #26	ENSGT00970000194118	ENSGT00940000164144	ENSGT00950000182925.D.a.b.a.b #27	ENSGT00940000166157	ENSGT00940000162988 #28	ENSGT00940000162502	ENSGT00950000182925.D.a.b.a.a.b ##27	ENSGT00950000182925.D.a.a.b.b ##27	ENSGT00390000004891	ENSGT00940000163673
Rabbit	MODERN SPECIES	1401	OPHN1 (ENSOCUG00000007381) #11	ENSOCUG00000032785	AR (ENSOCUG00000003142) #12	ENSOCUG00000039136	EDA2R (ENSOCUG00000022282) #13	ENSOCUG00000022819 #14	ENSOCUG00000023386 #15	HEPH (ENSOCUG00000014866) #16	ENSOCUG00000022713 #17	VSIG4 (ENSOCUG00000004172) #18	ENSOCUG00000021042	ENSOCUG00000000149 #19	ENSOCUG00000024108	LAS1L (ENSOCUG00000006760) #20	ZC3H12B (ENSOCUG00000006130) #21	ZC4H2 (ENSOCUG00000013393) #22	ENSOCUG00000029232	ENSOCUG00000023259 #23	MTMR8 (ENSOCUG00000001617)	ASB12 (ENSOCUG00000023698) #24	AMER1 (ENSOCUG00000001613) #25	ENSOCUG00000030864	ENSOCUG00000011267 #26	ENSOCUG00000027796	ENSOCUG00000031797	ENSOCUG00000029401	SPIN4 (ENSOCUG00000017930) #27	ENSOCUG00000022866	ENSOCUG00000003505 #28	ENSOCUG00000032805	FAAH2 (ENSOCUG00000029015)
Pika	MODERN SPECIES	909																ZC4H2 (ENSOPRG00000000375) #22
Tree shrew	MODERN SPECIES	1182																ZC4H2 (ENSTBEG00000009891) #22