Bovidae	ANCESTRAL SPECIES	1	ENSGT00940000155689	ENSGT00940000159332 #7	ENSGT00390000016051.i #8	ENSGT00940000163099 #9	ENSGT00390000015205 #10	ENSGT00940000162278 #11	ENSGT00940000158387 #12	ENSGT00940000161290 #13	ENSGT00390000002053 #14	ENSGT00390000001528 #15	ENSGT00950000183034.B #16	ENSGT00940000156790 #18	ENSGT00390000017955.c #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214 #22	ENSGT00940000155272 #23	ENSGT00940000154788.nb.b ##28	ENSGT00390000009130.a.b	ENSGT00940000158790 #24	ENSGT00940000161166 #25	ENSGT00390000017767.b.b #26	ENSGT00940000161351 #27	ENSGT00940000154788.nb.a #28	ENSGT00940000155824.C #32	ENSGT00730000111729 #31	ENSGT00390000002919 #33	ENSGT00940000158787 #34	ENSGT00940000159442	ENSGT01090000260070.C	ENSGT00390000017974
Caprinae	ANCESTRAL SPECIES	2	ENSGT00940000155689	ENSGT00940000159332 #7	ENSGT00390000016051.i #8	ENSGT00940000163099 #9	ENSGT00390000015205 #10	ENSGT00940000162278 #11	ENSGT00940000158387 #12	ENSGT00940000161290 #13	ENSGT00390000002053 #14	ENSGT00390000001528 #15	ENSGT00950000183034.B #16	ENSGT00940000156790 #18	ENSGT00390000017955.c #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214 #22	ENSGT00390000009130.a.b	ENSGT00940000155272.i #23	ENSGT00940000158790 #24	ENSGT00940000161166 #25	ENSGT00390000017767.b.b #26	ENSGT00940000161351 #27	ENSGT00940000154788.nb.a #28	ENSGT00940000155272.j #30	ENSGT00730000111729 #31	ENSGT00940000155824.C #32	ENSGT00940000165766	ENSGT00390000002919 #33	ENSGT00940000158787 #34	ENSGT00940000159442	ENSGT01090000260070.C
Rambouillet Sheep	MODERN SPECIES		RIMS3 (ENSOARG00020000046) #7	ENSOARG00020000045 #8	ZNF684 (ENSOARG00020000044) #9	EXO5 (ENSOARG00020000039) #10	ZFP69 (ENSOARG00020026052) #11	SMAP2 (ENSOARG00020026036) #12	COL9A2 (ENSOARG00020026019) #13	ZMPSTE24 (ENSOARG00020026009) #14	TMCO2 (ENSOARG00020026004) #15	RLF (ENSOARG00020025999) #16	ENSOARG00020025995 #17	PPT1 (ENSOARG00020025978) #18	CAP1 (ENSOARG00020025969) #19	MFSD2A (ENSOARG00020025960) #20	ENSOARG00020025955 #21	TRIT1 (ENSOARG00020025939) #22	ENSOARG00020025927 #23	PPIE (ENSOARG00020025915) #24	HPCAL4 (ENSOARG00020025905) #25	NT5C1A (ENSOARG00020025901) #26	HEYL (ENSOARG00020025898) #27	PABPC4 (ENSOARG00020025866) #28	ENSOARG00020025851 #29	ENSOARG00020025845 #30	ENSOARG00020025841 #31	MACF1 (ENSOARG00020018731) #32	NDUFS5 (ENSOARG00020018138) #33	AKIRIN1 (ENSOARG00020017964) #34	ENSOARG00020017826 #35	RRAGC (ENSOARG00020017615) #36	POU3F1 (ENSOARG00020017594) #37
Goat	MODERN SPECIES	22	NFYC (ENSCHIG00000021122)	RIMS3 (ENSCHIG00000008574) #7	ENSCHIG00000018474 #8	ZNF684 (ENSCHIG00000014482) #9	EXO5 (ENSCHIG00000007542) #10	ZFP69 (ENSCHIG00000008554) #11	ENSCHIG00000001509	SMAP2 (ENSCHIG00000026204) #12	ZMPSTE24 (ENSCHIG00000014367) #14	TMCO2 (ENSCHIG00000020895) #15	RLF (ENSCHIG00000008734) #16	PPT1 (ENSCHIG00000024964) #18	ENSCHIG00000021156 #19	MFSD2A (ENSCHIG00000005567) #20	MYCL (ENSCHIG00000017111) #21	TRIT1 (ENSCHIG00000013259) #22	ENSCHIG00000019430	ENSCHIG00000025198 #23	ENSCHIG00000012509 #24	HPCAL4 (ENSCHIG00000017598) #25	NT5C1A (ENSCHIG00000026840) #26	HEYL (ENSCHIG00000013434) #27	ENSCHIG00000019398 #28	ENSCHIG00000023905 #24	ENSCHIG00000012300	ENSCHIG00000021022 #30	ENSCHIG00000001374 #31	MACF1 (ENSCHIG00000008154) #32	ENSCHIG00000003870	NDUFS5 (ENSCHIG00000016604) #33	AKIRIN1 (ENSCHIG00000016168) #34
Bovinae	ANCESTRAL SPECIES	1	ENSGT00940000159332 #7	ENSGT00390000016051.i #8	ENSGT00940000163099 #9	ENSGT00390000015205 #10	ENSGT00940000162278 #11	ENSGT00960000189866	ENSGT00940000158387 #12	ENSGT00940000161290 #13	ENSGT00390000002053 #14	ENSGT00390000001528 #15	ENSGT00950000183034.B #16	ENSGT00940000156790 #18	ENSGT00390000017955.c.d.a #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214 #22	ENSGT00940000158790 #24	ENSGT00940000161166 #25	ENSGT00390000017767.b.b #26	ENSGT00940000161351 #27	ENSGT00940000154788.nb.b ##28	ENSGT00940000155272 #23	ENSGT00390000009130.a.b	ENSGT00940000155824.C #32	ENSGT00730000111729 #31	ENSGT00390000002919 #33	ENSGT00940000158787 #34	ENSGT00940000159442	ENSGT01090000260070.C	ENSGT00940000165268 #35	ENSGT00950000183031.A.a.a.xd #36
Bos	ANCESTRAL SPECIES		ENSGT00940000163099 #9	ENSGT00390000015205 #10	ENSGT00940000162278 #11	ENSGT00960000189866	ENSGT00940000167707	ENSGT00940000158387 #12	ENSGT00940000161290 #13	ENSGT00390000002053 #14	ENSGT01050000245142	ENSGT00390000001528 #15	ENSGT00950000183034.B #16	ENSGT00940000156790 #18	ENSGT00390000017955.c.d.a #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214 #22	ENSGT00940000158790 #24	ENSGT00940000161166 #25	ENSGT00390000017767.b.b #26	ENSGT00940000161351 #27	ENSGT00940000154788.nb.b ##28	ENSGT00940000155272 #23	ENSGT00390000009130.a.b	ENSGT00940000155824.C #32	ENSGT00730000111729 #31	ENSGT00390000002919 #33	ENSGT00940000158787 #34	ENSGT00940000159442	ENSGT01090000260070.C	ENSGT00390000017974	ENSGT00950000183031.A.a.a.yd.b #36
Bos_a	ANCESTRAL SPECIES	1	ENSGT00940000163099 #9	ENSGT00390000015205 #10	ENSGT00940000162278 #11	ENSGT00960000189866	ENSGT00940000167707	ENSGT00940000158387 #12	ENSGT00940000161290 #13	ENSGT00390000002053 #14	ENSGT01050000245142	ENSGT00390000001528 #15	ENSGT00950000183034.B #16	ENSGT00940000156790 #18	ENSGT00390000017955.c.d.a #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214 #22	ENSGT00940000155272 #23	ENSGT00390000009130.a.b	ENSGT00940000158790 #24	ENSGT00940000161166 #25	ENSGT00390000017767.b.b #26	ENSGT00940000161351 #27	ENSGT00940000154788.nb.b ##28	ENSGT00940000155824.C #32	ENSGT00730000111729 #31	ENSGT00390000002919 #33	ENSGT00940000158787 #34	ENSGT00940000159442	ENSGT01090000260070.C	ENSGT00390000017974	ENSGT00940000165268 #35
Domestic yak	MODERN SPECIES	22	ENSBGRG00000016909 #8	ZNF684 (ENSBGRG00000016941) #9	EXO5 (ENSBGRG00000017012) #10	ZFP69 (ENSBGRG00000017030) #11	ENSBGRG00000017070	SMAP2 (ENSBGRG00000017114) #12	COL9A2 (ENSBGRG00000017451) #13	ZMPSTE24 (ENSBGRG00000017914) #14	ENSBGRG00000018213	TMCO2 (ENSBGRG00000000230) #15	RLF (ENSBGRG00000000236) #16	ENSBGRG00000000267 #18	ENSBGRG00000000339 #19	MFSD2A (ENSBGRG00000000405) #20	MYCL (ENSBGRG00000000513) #21	TRIT1 (ENSBGRG00000000546) #22	ENSBGRG00000000655	ENSBGRG00000000664 #23	OXCT2 (ENSBGRG00000000695)	PPIE (ENSBGRG00000000726) #24	HPCAL4 (ENSBGRG00000000777) #25	NT5C1A (ENSBGRG00000000790) #26	HEYL (ENSBGRG00000000802) #27	ENSBGRG00000000845 ##28	ENSBGRG00000001003	MACF1 (ENSBGRG00000001404) #32	AKIRIN1 (ENSBGRG00000005084) #34	RHBDL2 (ENSBGRG00000005216)	ENSBGRG00000005236	GJA9 (ENSBGRG00000005254)	ENSBGRG00000005258 #35
Wild yak	MODERN SPECIES	1716											ENSBMUG00000023831 #18	ENSBMUG00000023846 #18	ENSBMUG00000023863 #19	MFSD2A (ENSBMUG00000023897) #20	MYCL (ENSBMUG00000023911) #21	TRIT1 (ENSBMUG00000023957) #22	ENSBMUG00000023965	ENSBMUG00000023989 #23	ENSBMUG00000023995	PPIE (ENSBMUG00000024054) #24
Bos_b	ANCESTRAL SPECIES	1	ENSGT00390000016051.i #8	ENSGT00940000163099 #9	ENSGT00390000015205 #10	ENSGT00940000162278 #11	ENSGT00960000189866	ENSGT00940000167707	ENSGT00940000158387 #12	ENSGT00390000002053 #14	ENSGT01050000245142	ENSGT00390000001528 #15	ENSGT00950000183034.B #16	ENSGT00940000156790 #18	ENSGT00390000017955.c.d.a #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214 #22	ENSGT00940000155272.k #23	ENSGT00940000158790 #24	ENSGT00940000161166 #25	ENSGT00390000017767.b.b #26	ENSGT00940000161351 #27	ENSGT00940000154788.nb.b ##28	ENSGT00940000155272.l #23	ENSGT00940000155824.C #32	ENSGT00390000002919 #33	ENSGT00940000158787 #34	ENSGT00940000159442	ENSGT01090000260070.C	ENSGT00390000017974	ENSGT00950000183031.A.a.a.yd.b #36	ENSGT00940000163458 #37
Cow	MODERN SPECIES	22	NFYC (ENSBTAG00000021943)	RIMS3 (ENSBTAG00000018726) #7	ENSBTAG00000034332 #8	ZNF684 (ENSBTAG00000000533) #9	EXO5 (ENSBTAG00000000532) #10	ZFP69 (ENSBTAG00000039287) #11	ENSBTAG00000054444	SMAP2 (ENSBTAG00000021922) #12	ZMPSTE24 (ENSBTAG00000044178) #14	TMCO2 (ENSBTAG00000019698) #15	RLF (ENSBTAG00000019695) #16	PPT1 (ENSBTAG00000013367) #18	CAP1 (ENSBTAG00000013363) #19	MFSD2A (ENSBTAG00000013054) #20	MYCL (ENSBTAG00000054059) #21	TRIT1 (ENSBTAG00000013832) #22	ENSBTAG00000031600	ENSBTAG00000053451 #23	PPIE (ENSBTAG00000047314) #24	HPCAL4 (ENSBTAG00000014538) #25	NT5C1A (ENSBTAG00000002983) #26	HEYL (ENSBTAG00000008688) #27	PABPC4 (ENSBTAG00000017125) ##28	BMP8A (ENSBTAG00000050691) #23	MACF1 (ENSBTAG00000021024) #32	ENSBTAG00000053378	NDUFS5 (ENSBTAG00000010232) #33	AKIRIN1 (ENSBTAG00000004715) #34	RHBDL2 (ENSBTAG00000008023)	GJA9 (ENSBTAG00000030338)	MYCBP (ENSBTAG00000030337)
Hybrid Bos Indicus	MODERN SPECIES	22	ZNF684 (ENSBIXG00005029992) #9	EXO5 (ENSBIXG00005030004) #10	ZFP69 (ENSBIXG00005030017) #11	ENSBIXG00005030028	ENSBIXG00005030050	SMAP2 (ENSBIXG00005030073) #12	ENSBIXG00005030126	ZMPSTE24 (ENSBIXG00005030180) #14	ENSBIXG00005030197	TMCO2 (ENSBIXG00005030206) #15	RLF (ENSBIXG00005030215) #16	PPT1 (ENSBIXG00005030230) #18	ENSBIXG00005030267 #19	MFSD2A (ENSBIXG00005030283) #20	MYCL (ENSBIXG00005030301) #21	TRIT1 (ENSBIXG00005030335) #22	ENSBIXG00005030403	ENSBIXG00005030409 #23	PPIE (ENSBIXG00005030424) #24	HPCAL4 (ENSBIXG00005030438) #25	NT5C1A (ENSBIXG00005030444) #26	HEYL (ENSBIXG00005001536) #27	ENSBIXG00005001557 ##28	ENSBIXG00005029230 #23	MACF1 (ENSBIXG00005029161) #32	NDUFS5 (ENSBIXG00005005003) #33	AKIRIN1 (ENSBIXG00005028804) #34	RHBDL2 (ENSBIXG00005028704)	GJA9 (ENSBIXG00005004957)	MYCBP (ENSBIXG00005028655)	RRAGC (ENSBIXG00005002387) #36
American bison	MODERN SPECIES	3342	ENSBBBG00000001503 #8	ZNF684 (ENSBBBG00000009434) #9	EXO5 (ENSBBBG00000001501) #10	ZFP69 (ENSBBBG00000001500) #11	ENSBBBG00000001499	ENSBBBG00000007872	SMAP2 (ENSBBBG00000009431) #12	COL9A2 (ENSBBBG00000001498) #13	ZMPSTE24 (ENSBBBG00000008896) #14	TMCO2 (ENSBBBG00000001497) #15	RLF (ENSBBBG00000001496) #16	PPT1 (ENSBBBG00000009427) #18	ENSBBBG00000008895 #19	MFSD2A (ENSBBBG00000009417) #20	MYCL (ENSBBBG00000001492) #21	TRIT1 (ENSBBBG00000009411) #22	ENSBBBG00000009409	ENSBBBG00000009408 #23	ENSBBBG00000001488	PPIE (ENSBBBG00000009404) #24	HPCAL4 (ENSBBBG00000009399) #25	NT5C1A (ENSBBBG00000009398) #26	HEYL (ENSBBBG00000009396) #27	ENSBBBG00000009395 ##28	ENSBBBG00000009391 #23	MACF1 (ENSBBBG00000009386) #32	ENSBBBG00000009364 #31	NDUFS5 (ENSBBBG00000001473) #33	AKIRIN1 (ENSBBBG00000009361) #34	RHBDL2 (ENSBBBG00000001472)	GJA9 (ENSBBBG00000009359)