Sarcopterygii	ANCESTRAL SPECIES	483													ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00940000178962	ENSGT00390000015214 #22	ENSGT00940000178388	ENSGT00390000015159.a.a	ENSGT00940000165764
Tetrapoda	ANCESTRAL SPECIES	4		ENSGT00440000035378.c	ENSGT00940000158484	ENSGT00940000158000	ENSGT00940000156197	ENSGT00490000043398	ENSGT00390000002428.a	ENSGT00940000166197	ENSGT00910000144211	ENSGT00940000162741	ENSGT00940000156790 #18	ENSGT00390000017955.c #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00940000178962	ENSGT00390000015214 #22	ENSGT00940000178388	ENSGT00390000015159.a.a	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000158790 #25	ENSGT00940000155272 #24	ENSGT00940000155824.C #34	ENSGT00390000002919 #35	ENSGT00950000182995.e.a.b	ENSGT00950000182995.e.a.a.b	ENSGT00940000154576	ENSGT00940000158451	ENSGT00390000004700.a
Amniota	ANCESTRAL SPECIES	35	ENSGT01060000248564.a.b	ENSGT00440000035378.c	ENSGT00940000158484	ENSGT00940000158000	ENSGT00940000156197	ENSGT00490000043398	ENSGT00390000002428.a	ENSGT00940000166197	ENSGT00910000144211.n.a	ENSGT00940000160894	ENSGT00940000156790 #18	ENSGT00390000017955.c #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00940000178962	ENSGT00390000015214 #22	ENSGT00940000178388	ENSGT00390000015159.a.a	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000165717 #30	ENSGT00940000177851	ENSGT00940000158790 #25	ENSGT00940000155272 #24	ENSGT00980000198642	ENSGT01050000246310	ENSGT00940000166468	ENSGT00940000177120	ENSGT00730000111729 #33
Mammalia	ANCESTRAL SPECIES	19	ENSGT01060000248564.a.b	ENSGT00440000035378.c	ENSGT00940000158484	ENSGT00940000158000	ENSGT00940000156197	ENSGT00490000043398	ENSGT00390000002428.a	ENSGT00910000144211.n.a	ENSGT00940000162741	ENSGT00940000160894	ENSGT00940000156790 #18	ENSGT00390000017955.c #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00940000178962	ENSGT00390000015214 #22	ENSGT00940000178388	ENSGT00390000015159.a.a	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000158790 #25	ENSGT00940000155272 #24	ENSGT00980000198642	ENSGT00940000155824.C #34	ENSGT00940000165766	ENSGT00390000002919 #35	ENSGT00950000182995.e.a.b	ENSGT00950000182995.e.a.a.b	ENSGT00940000154576
Theria	ANCESTRAL SPECIES	36	ENSGT01070000253744.a.a.b.a	ENSGT00940000160023	ENSGT00940000159209 #7	ENSGT00940000155689 #8	ENSGT00940000159332 #9	ENSGT00940000158387 #13	ENSGT00940000161290	ENSGT00390000002053 #15	ENSGT00390000001528 #16	ENSGT00950000183034.B #17	ENSGT00940000156790 #18	ENSGT00390000017955.c #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00940000178962	ENSGT00390000015214 #22	ENSGT00940000178388	ENSGT00390000015159.a.a	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000158790 #25	ENSGT00940000155272 #24	ENSGT00980000198642	ENSGT00940000155824.C #34	ENSGT00940000165766	ENSGT00390000002919 #35	ENSGT00940000158787 #36	ENSGT00940000159442 #37	ENSGT01090000260070.C
Eutheria	ANCESTRAL SPECIES		ENSGT00940000159332 #9	ENSGT00940000163099 #10	ENSGT00390000015205	ENSGT00940000162278 #11	ENSGT00940000163434 #12	ENSGT00940000158387 #13	ENSGT00940000161290	ENSGT00390000002053 #15	ENSGT00390000001528 #16	ENSGT00950000183034.B #17	ENSGT00940000156790 #18	ENSGT00390000017955.c #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00940000178962	ENSGT00390000015214 #22	ENSGT00940000178388	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000158790 #25	ENSGT00390000009130.a.b #23	ENSGT00940000155272 #24	ENSGT00980000198642	ENSGT00730000111729 #33	ENSGT00940000155824.C #34	ENSGT00940000165766	ENSGT00390000002919 #35	ENSGT00940000158787 #36	ENSGT00940000159442 #37
Boreoeutheria	ANCESTRAL SPECIES		ENSGT00940000159332 #9	ENSGT00940000163099 #10	ENSGT00390000015205	ENSGT00940000162278 #11	ENSGT00940000163434 #12	ENSGT00940000158387 #13	ENSGT00940000161290	ENSGT00390000002053 #15	ENSGT00390000001528 #16	ENSGT00950000183034.B #17	ENSGT00940000156790 #18	ENSGT00390000017955.c #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00940000178962	ENSGT00390000015214 #22	ENSGT00940000164770	ENSGT00390000009130.a.b #23	ENSGT00940000155272 #24	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000165717 #30	ENSGT00980000198642	ENSGT00940000155824.C #34	ENSGT00730000111729 #33	ENSGT00390000002919 #35	ENSGT00940000158787 #36	ENSGT00940000159442 #37
Laurasiatheria	ANCESTRAL SPECIES		ENSGT00940000159332 #9	ENSGT00940000163099 #10	ENSGT00390000015205	ENSGT00940000162278 #11	ENSGT00940000163434 #12	ENSGT00940000158387 #13	ENSGT00940000161290	ENSGT00390000002053 #15	ENSGT00390000001528 #16	ENSGT00950000183034.B #17	ENSGT00940000156790 #18	ENSGT00390000017955.c #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00940000178962	ENSGT00390000015214 #22	ENSGT00940000164770	ENSGT00390000009130.a.b #23	ENSGT00940000155272 #24	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000155824.C #34	ENSGT00730000111729 #33	ENSGT00390000002919 #35	ENSGT00940000158787 #36	ENSGT00940000159442 #37	ENSGT01090000260070.C	ENSGT00390000017974
Laurasiatheria_a	ANCESTRAL SPECIES		ENSGT00940000159332 #9	ENSGT00940000163099 #10	ENSGT00390000015205	ENSGT00940000162278 #11	ENSGT00940000163434 #12	ENSGT00940000158387 #13	ENSGT00940000161290	ENSGT00390000002053 #15	ENSGT00390000001528 #16	ENSGT00950000183034.B #17	ENSGT00940000156790 #18	ENSGT00390000017955.c #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00940000178962	ENSGT00390000015214 #22	ENSGT00390000009130.a.b #23	ENSGT00940000155272 #24	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000155824.C #34	ENSGT00730000111729 #33	ENSGT00390000002919 #35	ENSGT00940000158787 #36	ENSGT00940000159442 #37	ENSGT01090000260070.C	ENSGT00390000017974	ENSGT00950000183031.A.a.a
Artiodactyla	ANCESTRAL SPECIES		ENSGT00940000155689 #8	ENSGT00940000159332 #9	ENSGT00940000163099 #10	ENSGT00390000015205	ENSGT00940000162278 #11	ENSGT00940000163434 #12	ENSGT00940000158387 #13	ENSGT00940000161290	ENSGT00390000002053 #15	ENSGT00390000001528 #16	ENSGT00950000183034.B #17	ENSGT00940000156790 #18	ENSGT00390000017955.c #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214 #22	ENSGT00390000009130.a.b #23	ENSGT00940000155272 #24	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000155824.C #34	ENSGT00730000111729 #33	ENSGT00390000002919 #35	ENSGT00940000158787 #36	ENSGT00940000159442 #37	ENSGT01090000260070.C	ENSGT00390000017974	ENSGT00950000183031.A.a.a
Artiodactyla_a	ANCESTRAL SPECIES		ENSGT00940000155689 #8	ENSGT00940000159332 #9	ENSGT00940000163099 #10	ENSGT00390000015205	ENSGT00940000162278 #11	ENSGT00940000163434 #12	ENSGT00940000158387 #13	ENSGT00940000161290	ENSGT00390000002053 #15	ENSGT00390000001528 #16	ENSGT00950000183034.B #17	ENSGT00940000156790 #18	ENSGT00390000017955.c #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214 #22	ENSGT00390000009130.a.b #23	ENSGT00940000155272 #24	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000155824.C #34	ENSGT00730000111729 #33	ENSGT00390000002919 #35	ENSGT00940000158787 #36	ENSGT00940000159442 #37	ENSGT01090000260070.C	ENSGT00390000017974	ENSGT00950000183031.A.a.a
Camelidae	ANCESTRAL SPECIES	3									ENSGT00390000002053 #15	ENSGT00390000001528 #16	ENSGT00950000183034.B #17	ENSGT00940000156790 #18	ENSGT00390000017955.c #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214 #22	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000165717 #30	ENSGT00940000155272 #24	ENSGT00390000009130.a.b #23	ENSGT00730000111729 #33	ENSGT00940000155824.C #34	ENSGT00390000002919 #35	ENSGT00940000158787 #36	ENSGT00940000159442 #37	ENSGT01090000260070.C	ENSGT00390000017974
Arabian camel	MODERN SPECIES	4	KCNQ4 (ENSCDRG00005014732) #7	NFYC (ENSCDRG00005014542) #8	RIMS3 (ENSCDRG00005014464) #9	ZNF684 (ENSCDRG00005014415) #10	ZFP69 (ENSCDRG00005014364) #11	ZFP69B (ENSCDRG00005014292) #12	SMAP2 (ENSCDRG00005014239) #13	ENSCDRG00005014109 #14	ZMPSTE24 (ENSCDRG00005013984) #15	TMCO2 (ENSCDRG00005013941) #16	RLF (ENSCDRG00005013887) #17	PPT1 (ENSCDRG00005013620) #18	CAP1 (ENSCDRG00005013432) #19	MFSD2A (ENSCDRG00005013329) #20	MYCL (ENSCDRG00005013289) #21	TRIT1 (ENSCDRG00005012882) #22	ENSCDRG00005012813 #23	ENSCDRG00005012658 #24	PPIE (ENSCDRG00005012507) #25	HPCAL4 (ENSCDRG00005012456) #26	NT5C1A (ENSCDRG00005012419) #27	HEYL (ENSCDRG00005012353) #28	PABPC4 (ENSCDRG00005012184) #29	ENSCDRG00005012115 #30	ENSCDRG00005012058 #31	ENSCDRG00005012033 #32	ENSCDRG00005012015 #33	MACF1 (ENSCDRG00005011193) #34	NDUFS5 (ENSCDRG00005011048) #35	AKIRIN1 (ENSCDRG00005010869) #36	RHBDL2 (ENSCDRG00005010740) #37
Alpaca	MODERN SPECIES	434			NFYC (ENSVPAG00000003034) #8	RIMS3 (ENSVPAG00000003033) #9	ZNF684 (ENSVPAG00000003031) #10	ZFP69 (ENSVPAG00000003028) #11	ZFP69B (ENSVPAG00000003027) #12	SMAP2 (ENSVPAG00000003026) #13	ENSVPAG00000003024 #14	ZMPSTE24 (ENSVPAG00000003023) #15	TMCO2 (ENSVPAG00000003021) #16	RLF (ENSVPAG00000003020) #17	PPT1 (ENSVPAG00000003014) #18	CAP1 (ENSVPAG00000003013) #19	ENSVPAG00000003009 #20	TRIT1 (ENSVPAG00000003008) #22
Artiodactyla_b	ANCESTRAL SPECIES		ENSGT00940000159332 #9	ENSGT00390000016051.i	ENSGT00940000163099 #10	ENSGT00390000015205	ENSGT00940000162278 #11	ENSGT00940000163434 #12	ENSGT00940000158387 #13	ENSGT00940000161290	ENSGT00390000002053 #15	ENSGT00390000001528 #16	ENSGT00950000183034.B #17	ENSGT00940000156790 #18	ENSGT00390000017955.c #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214 #22	ENSGT00390000009130.a.b #23	ENSGT00940000155272 #24	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000155824.C #34	ENSGT00730000111729 #33	ENSGT00390000002919 #35	ENSGT00940000158787 #36	ENSGT00940000159442 #37	ENSGT01090000260070.C	ENSGT00390000017974	ENSGT00950000183031.A.a.a
Pecora	ANCESTRAL SPECIES	2	ENSGT00940000159332 #9	ENSGT00390000016051.i	ENSGT00940000163099 #10	ENSGT00390000015205	ENSGT00940000162278 #11	ENSGT00940000163434 #12	ENSGT00940000158387 #13	ENSGT00940000161290	ENSGT00390000002053 #15	ENSGT00390000001528 #16	ENSGT00950000183034.B #17	ENSGT00940000156790 #18	ENSGT00390000017955.c #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214 #22	ENSGT00390000009130.a.b #23	ENSGT00940000155272 #24	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000155824.C #34	ENSGT00730000111729 #33	ENSGT00390000002919 #35	ENSGT00940000158787 #36	ENSGT00940000159442 #37	ENSGT01090000260070.C	ENSGT00390000017974	ENSGT00950000183031.A.a.a
Percora_a	ANCESTRAL SPECIES	1	ENSGT00940000155689 #8	ENSGT00940000159332 #9	ENSGT00390000016051.i	ENSGT00940000163099 #10	ENSGT00390000015205	ENSGT00940000162278 #11	ENSGT00940000158387 #13	ENSGT00940000161290	ENSGT00390000002053 #15	ENSGT00390000001528 #16	ENSGT00950000183034.B #17	ENSGT00940000156790 #18	ENSGT00390000017955.c #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214 #22	ENSGT00390000009130.a.b #23	ENSGT00940000155272 #24	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000155824.C #34	ENSGT00730000111729 #33	ENSGT00390000002919 #35	ENSGT00940000158787 #36	ENSGT00940000159442 #37	ENSGT01090000260070.C	ENSGT00390000017974	ENSGT00950000183031.A.a.a	ENSGT00940000163458
Bovidae	ANCESTRAL SPECIES	1	ENSGT00940000155689 #8	ENSGT00940000159332 #9	ENSGT00390000016051.i	ENSGT00940000163099 #10	ENSGT00390000015205	ENSGT00940000162278 #11	ENSGT00940000158387 #13	ENSGT00940000161290	ENSGT00390000002053 #15	ENSGT00390000001528 #16	ENSGT00950000183034.B #17	ENSGT00940000156790 #18	ENSGT00390000017955.c #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214 #22	ENSGT00940000155272 #24	ENSGT00940000154788.nb.b #29	ENSGT00390000009130.a.b #23	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788.nb.a #29	ENSGT00940000155824.C #34	ENSGT00730000111729 #33	ENSGT00390000002919 #35	ENSGT00940000158787 #36	ENSGT00940000159442 #37	ENSGT01090000260070.C	ENSGT00390000017974
Bovinae	ANCESTRAL SPECIES	1	ENSGT00940000159332 #9	ENSGT00390000016051.i	ENSGT00940000163099 #10	ENSGT00390000015205	ENSGT00940000162278 #11	ENSGT00960000189866	ENSGT00940000158387 #13	ENSGT00940000161290	ENSGT00390000002053 #15	ENSGT00390000001528 #16	ENSGT00950000183034.B #17	ENSGT00940000156790 #18	ENSGT00390000017955.c.d.a #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214 #22	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788.nb.b #29	ENSGT00940000155272 #24	ENSGT00390000009130.a.b #23	ENSGT00940000155824.C #34	ENSGT00730000111729 #33	ENSGT00390000002919 #35	ENSGT00940000158787 #36	ENSGT00940000159442 #37	ENSGT01090000260070.C	ENSGT00940000165268	ENSGT00950000183031.A.a.a.xd
Bos	ANCESTRAL SPECIES		ENSGT00940000163099 #10	ENSGT00390000015205	ENSGT00940000162278 #11	ENSGT00960000189866	ENSGT00940000167707	ENSGT00940000158387 #13	ENSGT00940000161290	ENSGT00390000002053 #15	ENSGT01050000245142	ENSGT00390000001528 #16	ENSGT00950000183034.B #17	ENSGT00940000156790 #18	ENSGT00390000017955.c.d.a #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214 #22	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788.nb.b #29	ENSGT00940000155272 #24	ENSGT00390000009130.a.b #23	ENSGT00940000155824.C #34	ENSGT00730000111729 #33	ENSGT00390000002919 #35	ENSGT00940000158787 #36	ENSGT00940000159442 #37	ENSGT01090000260070.C	ENSGT00390000017974	ENSGT00950000183031.A.a.a.yd.b
Bos_a	ANCESTRAL SPECIES	1	ENSGT00940000163099 #10	ENSGT00390000015205	ENSGT00940000162278 #11	ENSGT00960000189866	ENSGT00940000167707	ENSGT00940000158387 #13	ENSGT00940000161290	ENSGT00390000002053 #15	ENSGT01050000245142	ENSGT00390000001528 #16	ENSGT00950000183034.B #17	ENSGT00940000156790 #18	ENSGT00390000017955.c.d.a #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214 #22	ENSGT00940000155272 #24	ENSGT00390000009130.a.b #23	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788.nb.b #29	ENSGT00940000155824.C #34	ENSGT00730000111729 #33	ENSGT00390000002919 #35	ENSGT00940000158787 #36	ENSGT00940000159442 #37	ENSGT01090000260070.C	ENSGT00390000017974	ENSGT00940000165268
Domestic yak	MODERN SPECIES	22	ENSBGRG00000016909	ZNF684 (ENSBGRG00000016941) #10	EXO5 (ENSBGRG00000017012)	ZFP69 (ENSBGRG00000017030) #11	ENSBGRG00000017070	SMAP2 (ENSBGRG00000017114) #13	COL9A2 (ENSBGRG00000017451)	ZMPSTE24 (ENSBGRG00000017914) #15	ENSBGRG00000018213	TMCO2 (ENSBGRG00000000230) #16	RLF (ENSBGRG00000000236) #17	ENSBGRG00000000267 #18	ENSBGRG00000000339 #19	MFSD2A (ENSBGRG00000000405) #20	MYCL (ENSBGRG00000000513) #21	TRIT1 (ENSBGRG00000000546) #22	ENSBGRG00000000655	ENSBGRG00000000664 #24	OXCT2 (ENSBGRG00000000695) #23	PPIE (ENSBGRG00000000726) #25	HPCAL4 (ENSBGRG00000000777) #26	NT5C1A (ENSBGRG00000000790) #27	HEYL (ENSBGRG00000000802) #28	ENSBGRG00000000845 #29	ENSBGRG00000001003	MACF1 (ENSBGRG00000001404) #34	AKIRIN1 (ENSBGRG00000005084) #36	RHBDL2 (ENSBGRG00000005216) #37	ENSBGRG00000005236	GJA9 (ENSBGRG00000005254)	ENSBGRG00000005258
Wild yak	MODERN SPECIES	1716											ENSBMUG00000023831 #18	ENSBMUG00000023846 #18	ENSBMUG00000023863 #19	MFSD2A (ENSBMUG00000023897) #20	MYCL (ENSBMUG00000023911) #21	TRIT1 (ENSBMUG00000023957) #22	ENSBMUG00000023965	ENSBMUG00000023989 #24	ENSBMUG00000023995 #23	PPIE (ENSBMUG00000024054) #25
Bos_b	ANCESTRAL SPECIES	1	ENSGT00390000016051.i	ENSGT00940000163099 #10	ENSGT00390000015205	ENSGT00940000162278 #11	ENSGT00960000189866	ENSGT00940000167707	ENSGT00940000158387 #13	ENSGT00390000002053 #15	ENSGT01050000245142	ENSGT00390000001528 #16	ENSGT00950000183034.B #17	ENSGT00940000156790 #18	ENSGT00390000017955.c.d.a #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214 #22	ENSGT00940000155272.k #24	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788.nb.b #29	ENSGT00940000155272.l #24	ENSGT00940000155824.C #34	ENSGT00390000002919 #35	ENSGT00940000158787 #36	ENSGT00940000159442 #37	ENSGT01090000260070.C	ENSGT00390000017974	ENSGT00950000183031.A.a.a.yd.b	ENSGT00940000163458
Cow	MODERN SPECIES	22	NFYC (ENSBTAG00000021943) #8	RIMS3 (ENSBTAG00000018726) #9	ENSBTAG00000034332	ZNF684 (ENSBTAG00000000533) #10	EXO5 (ENSBTAG00000000532)	ZFP69 (ENSBTAG00000039287) #11	ENSBTAG00000054444	SMAP2 (ENSBTAG00000021922) #13	ZMPSTE24 (ENSBTAG00000044178) #15	TMCO2 (ENSBTAG00000019698) #16	RLF (ENSBTAG00000019695) #17	PPT1 (ENSBTAG00000013367) #18	CAP1 (ENSBTAG00000013363) #19	MFSD2A (ENSBTAG00000013054) #20	MYCL (ENSBTAG00000054059) #21	TRIT1 (ENSBTAG00000013832) #22	ENSBTAG00000031600	ENSBTAG00000053451 #24	PPIE (ENSBTAG00000047314) #25	HPCAL4 (ENSBTAG00000014538) #26	NT5C1A (ENSBTAG00000002983) #27	HEYL (ENSBTAG00000008688) #28	PABPC4 (ENSBTAG00000017125) #29	BMP8A (ENSBTAG00000050691) #24	MACF1 (ENSBTAG00000021024) #34	ENSBTAG00000053378	NDUFS5 (ENSBTAG00000010232) #35	AKIRIN1 (ENSBTAG00000004715) #36	RHBDL2 (ENSBTAG00000008023) #37	GJA9 (ENSBTAG00000030338)	MYCBP (ENSBTAG00000030337)
Hybrid Bos Indicus	MODERN SPECIES	22	ZNF684 (ENSBIXG00005029992) #10	EXO5 (ENSBIXG00005030004)	ZFP69 (ENSBIXG00005030017) #11	ENSBIXG00005030028	ENSBIXG00005030050	SMAP2 (ENSBIXG00005030073) #13	ENSBIXG00005030126 #14	ZMPSTE24 (ENSBIXG00005030180) #15	ENSBIXG00005030197	TMCO2 (ENSBIXG00005030206) #16	RLF (ENSBIXG00005030215) #17	PPT1 (ENSBIXG00005030230) #18	ENSBIXG00005030267 #19	MFSD2A (ENSBIXG00005030283) #20	MYCL (ENSBIXG00005030301) #21	TRIT1 (ENSBIXG00005030335) #22	ENSBIXG00005030403	ENSBIXG00005030409 #24	PPIE (ENSBIXG00005030424) #25	HPCAL4 (ENSBIXG00005030438) #26	NT5C1A (ENSBIXG00005030444) #27	HEYL (ENSBIXG00005001536) #28	ENSBIXG00005001557 #29	ENSBIXG00005029230 #24	MACF1 (ENSBIXG00005029161) #34	NDUFS5 (ENSBIXG00005005003) #35	AKIRIN1 (ENSBIXG00005028804) #36	RHBDL2 (ENSBIXG00005028704) #37	GJA9 (ENSBIXG00005004957)	MYCBP (ENSBIXG00005028655)	RRAGC (ENSBIXG00005002387)
American bison	MODERN SPECIES	3342	ENSBBBG00000001503	ZNF684 (ENSBBBG00000009434) #10	EXO5 (ENSBBBG00000001501)	ZFP69 (ENSBBBG00000001500) #11	ENSBBBG00000001499	ENSBBBG00000007872	SMAP2 (ENSBBBG00000009431) #13	COL9A2 (ENSBBBG00000001498)	ZMPSTE24 (ENSBBBG00000008896) #15	TMCO2 (ENSBBBG00000001497) #16	RLF (ENSBBBG00000001496) #17	PPT1 (ENSBBBG00000009427) #18	ENSBBBG00000008895 #19	MFSD2A (ENSBBBG00000009417) #20	MYCL (ENSBBBG00000001492) #21	TRIT1 (ENSBBBG00000009411) #22	ENSBBBG00000009409	ENSBBBG00000009408 #24	ENSBBBG00000001488 #23	PPIE (ENSBBBG00000009404) #25	HPCAL4 (ENSBBBG00000009399) #26	NT5C1A (ENSBBBG00000009398) #27	HEYL (ENSBBBG00000009396) #28	ENSBBBG00000009395 #29	ENSBBBG00000009391 #24	MACF1 (ENSBBBG00000009386) #34	ENSBBBG00000009364 #33	NDUFS5 (ENSBBBG00000001473) #35	AKIRIN1 (ENSBBBG00000009361) #36	RHBDL2 (ENSBBBG00000001472) #37	GJA9 (ENSBBBG00000009359)
Caprinae	ANCESTRAL SPECIES	2	ENSGT00940000155689 #8	ENSGT00940000159332 #9	ENSGT00390000016051.i	ENSGT00940000163099 #10	ENSGT00390000015205	ENSGT00940000162278 #11	ENSGT00940000158387 #13	ENSGT00940000161290	ENSGT00390000002053 #15	ENSGT00390000001528 #16	ENSGT00950000183034.B #17	ENSGT00940000156790 #18	ENSGT00390000017955.c #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214 #22	ENSGT00390000009130.a.b #23	ENSGT00940000155272.i #24	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788.nb.a #29	ENSGT00940000155272.j #24	ENSGT00730000111729 #33	ENSGT00940000155824.C #34	ENSGT00940000165766	ENSGT00390000002919 #35	ENSGT00940000158787 #36	ENSGT00940000159442 #37	ENSGT01090000260070.C
Rambouillet Sheep	MODERN SPECIES		RIMS3 (ENSOARG00020000046) #9	ENSOARG00020000045	ZNF684 (ENSOARG00020000044) #10	EXO5 (ENSOARG00020000039)	ZFP69 (ENSOARG00020026052) #11	SMAP2 (ENSOARG00020026036) #13	COL9A2 (ENSOARG00020026019)	ZMPSTE24 (ENSOARG00020026009) #15	TMCO2 (ENSOARG00020026004) #16	RLF (ENSOARG00020025999) #17	ENSOARG00020025995	PPT1 (ENSOARG00020025978) #18	CAP1 (ENSOARG00020025969) #19	MFSD2A (ENSOARG00020025960) #20	ENSOARG00020025955 #21	TRIT1 (ENSOARG00020025939) #22	ENSOARG00020025927 #24	PPIE (ENSOARG00020025915) #25	HPCAL4 (ENSOARG00020025905) #26	NT5C1A (ENSOARG00020025901) #27	HEYL (ENSOARG00020025898) #28	PABPC4 (ENSOARG00020025866) #29	ENSOARG00020025851	ENSOARG00020025845 #24	ENSOARG00020025841 #33	MACF1 (ENSOARG00020018731) #34	NDUFS5 (ENSOARG00020018138) #35	AKIRIN1 (ENSOARG00020017964) #36	ENSOARG00020017826	RRAGC (ENSOARG00020017615)	POU3F1 (ENSOARG00020017594)
Goat	MODERN SPECIES	22	NFYC (ENSCHIG00000021122) #8	RIMS3 (ENSCHIG00000008574) #9	ENSCHIG00000018474	ZNF684 (ENSCHIG00000014482) #10	EXO5 (ENSCHIG00000007542)	ZFP69 (ENSCHIG00000008554) #11	ENSCHIG00000001509	SMAP2 (ENSCHIG00000026204) #13	ZMPSTE24 (ENSCHIG00000014367) #15	TMCO2 (ENSCHIG00000020895) #16	RLF (ENSCHIG00000008734) #17	PPT1 (ENSCHIG00000024964) #18	ENSCHIG00000021156 #19	MFSD2A (ENSCHIG00000005567) #20	MYCL (ENSCHIG00000017111) #21	TRIT1 (ENSCHIG00000013259) #22	ENSCHIG00000019430 #23	ENSCHIG00000025198 #24	ENSCHIG00000012509 #25	HPCAL4 (ENSCHIG00000017598) #26	NT5C1A (ENSCHIG00000026840) #27	HEYL (ENSCHIG00000013434) #28	ENSCHIG00000019398 #29	ENSCHIG00000023905 #25	ENSCHIG00000012300 #23	ENSCHIG00000021022 #24	ENSCHIG00000001374 #33	MACF1 (ENSCHIG00000008154) #34	ENSCHIG00000003870	NDUFS5 (ENSCHIG00000016604) #35	AKIRIN1 (ENSCHIG00000016168) #36
Siberian musk deer	MODERN SPECIES	341	NFYC (ENSMMSG00000004890) #8	RIMS3 (ENSMMSG00000005005) #9	ENSMMSG00000005033 #10	EXO5 (ENSMMSG00000005044)	ZFP69 (ENSMMSG00000005053) #11	SMAP2 (ENSMMSG00000005092) #13	TMCO2 (ENSMMSG00000005220) #16	COL9A2 (ENSMMSG00000005256)	ZMPSTE24 (ENSMMSG00000005324) #15	RLF (ENSMMSG00000005369) #17	ENSMMSG00000005421	PPT1 (ENSMMSG00000005470) #18	CAP1 (ENSMMSG00000005620) #19	MFSD2A (ENSMMSG00000005706) #20	MYCL (ENSMMSG00000005769) #21	TRIT1 (ENSMMSG00000005816) #22	ENSMMSG00000005898 #24	ENSMMSG00000005998 #23	ENSMMSG00000006010 #23	ENSMMSG00000006028	ENSMMSG00000006054	ENSMMSG00000006072 #29	HEYL (ENSMMSG00000006102) #28	NT5C1A (ENSMMSG00000006118) #27	HPCAL4 (ENSMMSG00000006130) #26	ENSMMSG00000006152 #25
Yarkand deer	MODERN SPECIES	12	RIMS3 (ENSCHYG00000015596) #9	ENSCHYG00000015713	ZNF684 (ENSCHYG00000015737) #10	EXO5 (ENSCHYG00000015822)	ZFP69 (ENSCHYG00000015853) #11	ZFP69B (ENSCHYG00000015997) #12	SMAP2 (ENSCHYG00000016181) #13	COL9A2 (ENSCHYG00000016349)	ZMPSTE24 (ENSCHYG00000017010) #15	TMCO2 (ENSCHYG00000017083) #16	RLF (ENSCHYG00000017117) #17	PPT1 (ENSCHYG00000017225) #18	CAP1 (ENSCHYG00000017634) #19	MFSD2A (ENSCHYG00000017841) #20	MYCL (ENSCHYG00000018013) #21	TRIT1 (ENSCHYG00000018136) #22	PPIE (ENSCHYG00000018625) #25	HPCAL4 (ENSCHYG00000018782) #26	NT5C1A (ENSCHYG00000018911) #27	HEYL (ENSCHYG00000018992) #28	ENSCHYG00000019106 #29	MACF1 (ENSCHYG00000019881) #34	ENSCHYG00000026566 #33	ENSCHYG00000026593 #35	RHBDL2 (ENSCHYG00000026637) #37	GJA9 (ENSCHYG00000026651)	ENSCHYG00000026657	RRAGC (ENSCHYG00000026668)	POU3F1 (ENSCHYG00000026684)	UTP11 (ENSCHYG00000026688)	FHL3 (ENSCHYG00000026698)
Cetacea	ANCESTRAL SPECIES		ENSGT00940000159332 #9	ENSGT00390000016051.i	ENSGT00940000163099 #10	ENSGT00390000015205	ENSGT00940000162278 #11	ENSGT00940000163434 #12	ENSGT00940000158387 #13	ENSGT00940000161290	ENSGT00390000002053 #15	ENSGT00390000001528 #16	ENSGT00950000183034.B #17	ENSGT00940000156790 #18	ENSGT00390000017955.c #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214 #22	ENSGT00940000155272.h.a #24	ENSGT00390000009130.a.b #23	ENSGT00940000155272.h.b #24	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788.ib.a.b #29	ENSGT00940000155824.C #34	ENSGT00730000111729 #33	ENSGT00390000002919 #35	ENSGT00940000158787 #36	ENSGT00940000159442 #37	ENSGT01090000260070.C	ENSGT00390000017974
Odontoceti	ANCESTRAL SPECIES		ENSGT00940000159332 #9	ENSGT00390000016051.i	ENSGT00940000163099 #10	ENSGT00390000015205	ENSGT00940000162278 #11	ENSGT00940000163434 #12	ENSGT00940000158387 #13	ENSGT00940000161290	ENSGT00390000002053 #15	ENSGT00390000001528 #16	ENSGT00950000183034.B #17	ENSGT00940000156790 #18	ENSGT00390000017955.c #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214 #22	ENSGT00940000155272.h.a #24	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788.ib.a.b #29	ENSGT00940000158790 #25	ENSGT00390000009130.a.b #23	ENSGT00940000155272.h.b #24	ENSGT00940000155824.C #34	ENSGT00730000111729 #33	ENSGT00390000002919 #35	ENSGT00940000158787 #36	ENSGT00940000159442 #37	ENSGT01090000260070.C	ENSGT00390000017974
Sperm whale	MODERN SPECIES	14	RIMS3 (ENSPCTG00005000713) #9	ENSPCTG00005000725	ZNF684 (ENSPCTG00005000746) #10	EXO5 (ENSPCTG00005000767)	ZFP69 (ENSPCTG00005000774) #11	ZFP69B (ENSPCTG00005000787) #12	SMAP2 (ENSPCTG00005000816) #13	ENSPCTG00005000858	COL9A2 (ENSPCTG00005000884)	ZMPSTE24 (ENSPCTG00005000946) #15	TMCO2 (ENSPCTG00005000997) #16	RLF (ENSPCTG00005001013) #17	PPT1 (ENSPCTG00005001029) #18	ENSPCTG00005001041 #19	MYCL (ENSPCTG00005001056) #21	TRIT1 (ENSPCTG00005001108) #22	ENSPCTG00005001192 #24	ENSPCTG00005001205 #23	PPIE (ENSPCTG00005001275) #25	HPCAL4 (ENSPCTG00005001433) #26	NT5C1A (ENSPCTG00005001445) #27	HEYL (ENSPCTG00005001467) #28	ENSPCTG00005001487 #29	ENSPCTG00005001506 #24	MACF1 (ENSPCTG00005001870) #34	ENSPCTG00005003419 #33	RRAGC (ENSPCTG00005003438)	MYCBP (ENSPCTG00005003457)	GJA9 (ENSPCTG00005003465)	RHBDL2 (ENSPCTG00005003477) #37	ENSPCTG00005003493
Odontoceti_a	ANCESTRAL SPECIES		ENSGT00940000159332 #9	ENSGT00390000016051.i	ENSGT00940000163099 #10	ENSGT00390000015205	ENSGT00940000162278 #11	ENSGT00940000163434 #12	ENSGT00940000158387 #13	ENSGT00940000161290	ENSGT00390000002053 #15	ENSGT00390000001528 #16	ENSGT00950000183034.B #17	ENSGT00940000156790 #18	ENSGT00390000017955.c #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214 #22	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788.ib.a.b #29	ENSGT00940000158790 #25	ENSGT00390000009130.a.b #23	ENSGT00940000155272.h.b #24	ENSGT00940000155824.C #34	ENSGT00730000111729 #33	ENSGT00390000002919 #35	ENSGT00940000158787 #36	ENSGT00940000159442 #37	ENSGT01090000260070.C	ENSGT00390000017974	ENSGT00950000183031.A.a.a
Dolphin	MODERN SPECIES	235														MFSD2A (ENSTTRG00000005126) #20	MYCL (ENSTTRG00000005113) #21	TRIT1 (ENSTTRG00000005064) #22
Odontoceti_b	ANCESTRAL SPECIES		ENSGT00390000016051.i	ENSGT00940000163099 #10	ENSGT00390000015205	ENSGT00940000162278 #11	ENSGT00940000163434 #12	ENSGT00940000158387 #13	ENSGT00940000154732.r	ENSGT00940000161290	ENSGT00390000002053 #15	ENSGT00390000001528 #16	ENSGT00950000183034.B #17	ENSGT00940000156790 #18	ENSGT00390000017955.c #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214 #22	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788.ib.a.b #29	ENSGT00940000158790 #25	ENSGT00390000009130.a.b #23	ENSGT00940000155272.h.b #24	ENSGT00940000155824.C #34	ENSGT00730000111729 #33	ENSGT00390000002919 #35	ENSGT00940000158787 #36	ENSGT00940000159442 #37	ENSGT01090000260070.C	ENSGT00390000017974	ENSGT00950000183031.A.a.a
Vaquita	MODERN SPECIES		ENSPSNG00000000535 #10	ZNF684 (ENSPSNG00000000492) #10	EXO5 (ENSPSNG00000000484)	ZFP69 (ENSPSNG00000000470) #11	ZFP69B (ENSPSNG00000000443) #12	ENSPSNG00000000420	SMAP2 (ENSPSNG00000000368) #13	COL9A2 (ENSPSNG00000000303)	ZMPSTE24 (ENSPSNG00000000265) #15	TMCO2 (ENSPSNG00000000247) #16	RLF (ENSPSNG00000000213) #17	PPT1 (ENSPSNG00000000185) #18	CAP1 (ENSPSNG00000000118) #19	MFSD2A (ENSPSNG00000000074) #20	ENSPSNG00000000051 #21	TRIT1 (ENSPSNG00000000026) #22	ENSPSNG00000000013 #24	ENSPSNG00000000009 #25	HPCAL4 (ENSPSNG00000000004) #26	NT5C1A (ENSPSNG00000022210) #27	HEYL (ENSPSNG00000022201) #28	ENSPSNG00000022176 #29	ENSPSNG00000022154 #25	ENSPSNG00000022141 #23	ENSPSNG00000022132 #24	NDUFS5 (ENSPSNG00000019668) #35	AKIRIN1 (ENSPSNG00000019597) #36	ENSPSNG00000019543	RHBDL2 (ENSPSNG00000019512) #37	GJA9 (ENSPSNG00000019493)	MYCBP (ENSPSNG00000019460)
Monodontidae	ANCESTRAL SPECIES		ENSGT00390000016051.i	ENSGT00940000163099 #10	ENSGT00390000015205	ENSGT00940000162278 #11	ENSGT00940000163434 #12	ENSGT00940000158387 #13	ENSGT00940000154732.r	ENSGT00940000161290	ENSGT00390000002053 #15	ENSGT00390000001528 #16	ENSGT00950000183034.B #17	ENSGT00940000156790 #18	ENSGT00390000017955.c #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214 #22	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788.ib.a.b #29	ENSGT00940000158790 #25	ENSGT00390000009130.a.b #23	ENSGT00940000155272.h.b #24	ENSGT00940000155824.C #34	ENSGT00730000111729 #33	ENSGT00390000002919 #35	ENSGT00940000158787 #36	ENSGT00940000159442 #37	ENSGT01090000260070.C	ENSGT00390000017974	ENSGT00950000183031.A.a.a
Narwhal	MODERN SPECIES	304	RIMS3 (ENSMMNG00015005511) #9	ENSMMNG00015005529	ZNF684 (ENSMMNG00015005545) #10	ZFP69 (ENSMMNG00015005572) #11	ZFP69B (ENSMMNG00015005594) #12	SMAP2 (ENSMMNG00015005643) #13	ENSMMNG00015005687	COL9A2 (ENSMMNG00015005714)	ZMPSTE24 (ENSMMNG00015005742) #15	TMCO2 (ENSMMNG00015005776) #16	RLF (ENSMMNG00015005790) #17	PPT1 (ENSMMNG00015005839) #18	CAP1 (ENSMMNG00015005895) #19	MFSD2A (ENSMMNG00015005948) #20	MYCL (ENSMMNG00015006076) #21	TRIT1 (ENSMMNG00015006142) #22	ENSMMNG00015006223	HPCAL4 (ENSMMNG00015006263) #26	NT5C1A (ENSMMNG00015006285) #27	HEYL (ENSMMNG00015006307) #28	ENSMMNG00015006370 #29	MACF1 (ENSMMNG00015007113) #34	ENSMMNG00015008441 #33	NDUFS5 (ENSMMNG00015008453) #35	AKIRIN1 (ENSMMNG00015008468) #36	RHBDL2 (ENSMMNG00015008493) #37	GJA9 (ENSMMNG00015008510)	MYCBP (ENSMMNG00015008524)	RRAGC (ENSMMNG00015008543)	POU3F1 (ENSMMNG00015008564)	UTP11 (ENSMMNG00015008575)
Beluga whale	DUPLICATION
Beluga whale	MODERN SPECIES	74	ENSDLEG00000021551	ZNF684 (ENSDLEG00000021547) #10	EXO5 (ENSDLEG00000021545)	ZFP69 (ENSDLEG00000021544) #11	ZFP69B (ENSDLEG00000021542) #12	ENSDLEG00000021541	SMAP2 (ENSDLEG00000021539) #13	COL9A2 (ENSDLEG00000021538)	ZMPSTE24 (ENSDLEG00000021536) #15	TMCO2 (ENSDLEG00000021535) #16	RLF (ENSDLEG00000021532) #17	PPT1 (ENSDLEG00000021528) #18	CAP1 (ENSDLEG00000021526) #19	MFSD2A (ENSDLEG00000021522) #20	MYCL (ENSDLEG00000021520) #21	ENSDLEG00000021516 #22	ENSDLEG00000021514 #22	ENSDLEG00000021508 #24	ENSDLEG00000021505 #25	HPCAL4 (ENSDLEG00000021500) #26	NT5C1A (ENSDLEG00000021498) #27	HEYL (ENSDLEG00000021494) #28	PABPC4 (ENSDLEG00000021388) #29	ENSDLEG00000021372 #25	ENSDLEG00000021370 #23	ENSDLEG00000021368 #24	MACF1 (ENSDLEG00000010769) #34	NDUFS5 (ENSDLEG00000008851) #35	AKIRIN1 (ENSDLEG00000008811) #36	ENSDLEG00000008788	RHBDL2 (ENSDLEG00000008682) #37
Beluga whale	MODERN SPECIES	74	ZNF684 (ENSDLEG00000021547) #10	EXO5 (ENSDLEG00000021545)	ZFP69 (ENSDLEG00000021544) #11	ZFP69B (ENSDLEG00000021542) #12	ENSDLEG00000021541	SMAP2 (ENSDLEG00000021539) #13	COL9A2 (ENSDLEG00000021538)	ZMPSTE24 (ENSDLEG00000021536) #15	TMCO2 (ENSDLEG00000021535) #16	RLF (ENSDLEG00000021532) #17	PPT1 (ENSDLEG00000021528) #18	CAP1 (ENSDLEG00000021526) #19	MFSD2A (ENSDLEG00000021522) #20	MYCL (ENSDLEG00000021520) #21	ENSDLEG00000021516 #22	ENSDLEG00000021514 #22	ENSDLEG00000021508 #24	ENSDLEG00000021505 #25	HPCAL4 (ENSDLEG00000021500) #26	NT5C1A (ENSDLEG00000021498) #27	HEYL (ENSDLEG00000021494) #28	PABPC4 (ENSDLEG00000021388) #29	ENSDLEG00000021372 #25	ENSDLEG00000021370 #23	ENSDLEG00000021368 #24	MACF1 (ENSDLEG00000010769) #34	NDUFS5 (ENSDLEG00000008851) #35	AKIRIN1 (ENSDLEG00000008811) #36	ENSDLEG00000008788	RHBDL2 (ENSDLEG00000008682) #37	GJA9 (ENSDLEG00000008667)
Blue whale	DUPLICATION
Blue whale	MODERN SPECIES		ENSBMSG00010009674	ZNF684 (ENSBMSG00010009663) #10	EXO5 (ENSBMSG00010009654)	ZFP69 (ENSBMSG00010009643) #11	ENSBMSG00010009632	ENSBMSG00010009624	SMAP2 (ENSBMSG00010009600) #13	COL9A2 (ENSBMSG00010003237)	ZMPSTE24 (ENSBMSG00010003220) #15	TMCO2 (ENSBMSG00010003207) #16	RLF (ENSBMSG00010003196) #17	PPT1 (ENSBMSG00010003133) #18	CAP1 (ENSBMSG00010003102) #19	MFSD2A (ENSBMSG00010003050) #20	MYCL (ENSBMSG00010003030) #21	ENSBMSG00010003020 #22	ENSBMSG00010003005 #22	ENSBMSG00010002990 #23	ENSBMSG00010002978 #24	ENSBMSG00010002967 #25	HPCAL4 (ENSBMSG00010002948) #26	NT5C1A (ENSBMSG00010002931) #27	HEYL (ENSBMSG00010002923) #28	ENSBMSG00010002892 #29	ENSBMSG00010002858 #25	ENSBMSG00010002847 #23	ENSBMSG00010002837 #24	ENSBMSG00010002830 #33	MACF1 (ENSBMSG00010002618) #34	NDUFS5 (ENSBMSG00010002425) #35	AKIRIN1 (ENSBMSG00010002402) #36
Blue whale	MODERN SPECIES		ZNF684 (ENSBMSG00010009663) #10	EXO5 (ENSBMSG00010009654)	ZFP69 (ENSBMSG00010009643) #11	ENSBMSG00010009632	ENSBMSG00010009624	SMAP2 (ENSBMSG00010009600) #13	COL9A2 (ENSBMSG00010003237)	ZMPSTE24 (ENSBMSG00010003220) #15	TMCO2 (ENSBMSG00010003207) #16	RLF (ENSBMSG00010003196) #17	PPT1 (ENSBMSG00010003133) #18	CAP1 (ENSBMSG00010003102) #19	MFSD2A (ENSBMSG00010003050) #20	MYCL (ENSBMSG00010003030) #21	ENSBMSG00010003020 #22	ENSBMSG00010003005 #22	ENSBMSG00010002990 #23	ENSBMSG00010002978 #24	ENSBMSG00010002967 #25	HPCAL4 (ENSBMSG00010002948) #26	NT5C1A (ENSBMSG00010002931) #27	HEYL (ENSBMSG00010002923) #28	ENSBMSG00010002892 #29	ENSBMSG00010002858 #25	ENSBMSG00010002847 #23	ENSBMSG00010002837 #24	ENSBMSG00010002830 #33	MACF1 (ENSBMSG00010002618) #34	NDUFS5 (ENSBMSG00010002425) #35	AKIRIN1 (ENSBMSG00010002402) #36	ENSBMSG00010002380
Suina	ANCESTRAL SPECIES	27	ENSGT00940000155689 #8	ENSGT00940000159332 #9	ENSGT00940000163099 #10	ENSGT00390000015205	ENSGT00940000162278 #11	ENSGT00940000163434 #12	ENSGT00940000158387 #13	ENSGT00940000161290	ENSGT00390000002053 #15	ENSGT00390000001528 #16	ENSGT00950000183034.B #17	ENSGT00940000156790 #18	ENSGT00390000017955.c #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214 #22	ENSGT00940000155272 #24	ENSGT00390000009130.a.b #23	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29
Pig	MODERN SPECIES	14	SEH1L (ENSSSCG00000003673)	CEP192 (ENSSSCG00000059665)	LDLRAD4 (ENSSSCG00000027417)	FAM210A (ENSSSCG00000058331)	RNMT (ENSSSCG00000025855)	MC5R (ENSSSCG00000028411)	MC2R (ENSSSCG00000039227)	ENSSSCG00000023322 #14	ZMPSTE24 (ENSSSCG00000027902) #15	TMCO2 (ENSSSCG00000036395) #16	RLF (ENSSSCG00000003670) #17	PPT1 (ENSSSCG00000036673) #18	CAP1 (ENSSSCG00000003672) #19	MFSD2A (ENSSSCG00000003669) #20	ENSSSCG00000039761 #21	TRIT1 (ENSSSCG00000003667) #22	ENSSSCG00000037514 #24	ENSSSCG00000003664 #25	HPCAL4 (ENSSSCG00000023460) #26	NT5C1A (ENSSSCG00000003662) #27	HEYL (ENSSSCG00000038956) #28	PABPC4 (ENSSSCG00000003660) #29	ENSSSCG00000029705 #25	ENSSSCG00000003666 #23	ENSSSCG00000032082 #24	ENSSSCG00000036451	ENSSSCG00000003655 #33	ENSSSCG00000034367	MACF1 (ENSSSCG00000003654) #34	ENSSSCG00000050377	ENSSSCG00000056202 #34
Chacoan peccary	MODERN SPECIES	54	RIMS3 (ENSCWAG00000012432) #9	ENSCWAG00000012478 #10	ZNF684 (ENSCWAG00000012539) #10	EXO5 (ENSCWAG00000012561)	ZFP69 (ENSCWAG00000012581) #11	ZFP69B (ENSCWAG00000012643) #12	SMAP2 (ENSCWAG00000012703) #13	COL9A2 (ENSCWAG00000012744)	ZMPSTE24 (ENSCWAG00000013036) #15	TMCO2 (ENSCWAG00000013076) #16	RLF (ENSCWAG00000013118) #17	PPT1 (ENSCWAG00000013154) #18	CAP1 (ENSCWAG00000013235) #19	MFSD2A (ENSCWAG00000013374) #20	MYCL (ENSCWAG00000013677) #21	TRIT1 (ENSCWAG00000013773) #22
Laurasiatheria_b	ANCESTRAL SPECIES		ENSGT00940000159332 #9	ENSGT00940000163099 #10	ENSGT00390000015205	ENSGT00940000162278 #11	ENSGT00940000163434 #12	ENSGT00940000158387 #13	ENSGT00940000161290	ENSGT00390000002053 #15	ENSGT00390000001528 #16	ENSGT00950000183034.B #17	ENSGT00940000156790 #18	ENSGT00390000017955.c #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00940000178962	ENSGT00390000015214 #22	ENSGT00940000155272 #24	ENSGT00390000009130.a.b #23	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000165766	ENSGT00390000002919 #35	ENSGT00940000158787 #36	ENSGT00940000159442 #37	ENSGT01090000260070.C	ENSGT00390000017974	ENSGT00950000183031.A.a.a	ENSGT00940000163458
Carnivora	ANCESTRAL SPECIES	1	ENSGT00940000159332 #9	ENSGT00940000163099 #10	ENSGT00390000015205	ENSGT00940000162278 #11	ENSGT00940000163434 #12	ENSGT00940000158387 #13	ENSGT00940000161290	ENSGT00390000002053 #15	ENSGT00390000001528 #16	ENSGT00950000183034.B #17	ENSGT00940000156790 #18	ENSGT00390000017955.c #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00940000178962	ENSGT00390000015214 #22	ENSGT00940000155272 #24	ENSGT00390000009130.a.b #23	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000165766	ENSGT00390000002919 #35	ENSGT00940000158787 #36	ENSGT00940000159442 #37	ENSGT01090000260070.C	ENSGT00390000017974	ENSGT00950000183031.A.a.a	ENSGT00940000163458
Felidae	ANCESTRAL SPECIES	10	ENSGT00940000155689 #8	ENSGT00940000159332 #9	ENSGT00940000163099 #10	ENSGT00390000015205	ENSGT00940000162278 #11	ENSGT00940000163434 #12	ENSGT00940000158387 #13	ENSGT00940000161290	ENSGT00390000002053 #15	ENSGT00390000001528 #16	ENSGT00950000183034.B #17	ENSGT00940000156790 #18	ENSGT00390000017955.c.k #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214 #22	ENSGT00940000155272 #24	ENSGT00390000009130.a.b #23	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29
Panthera	ANCESTRAL SPECIES	4	ENSGT00940000155689 #8	ENSGT00940000159332 #9	ENSGT00940000163099 #10	ENSGT00390000015205	ENSGT00940000162278 #11	ENSGT00940000163434 #12	ENSGT00940000158387 #13	ENSGT00940000161290	ENSGT00390000002053 #15	ENSGT00390000001528 #16	ENSGT00950000183034.B #17	ENSGT00940000156790 #18	ENSGT00390000017955.c.k #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214 #22	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00390000009130.a.b #23	ENSGT00940000155272 #24	ENSGT00940000155824.C #34	ENSGT00390000002919 #35	ENSGT00940000158787 #36	ENSGT00940000159442 #37	ENSGT01090000260070.C	ENSGT00940000165268	ENSGT00950000183031.A.a.a	ENSGT00940000163458
Panthera_a	ANCESTRAL SPECIES	11	ENSGT00940000155689 #8	ENSGT00940000159332 #9	ENSGT00940000163099 #10	ENSGT00390000015205	ENSGT00940000162278 #11	ENSGT00940000163434 #12	ENSGT00940000158387 #13	ENSGT00940000161290	ENSGT00390000002053 #15	ENSGT00390000001528 #16	ENSGT00950000183034.B #17	ENSGT00940000156790 #18	ENSGT00390000017955.c.k #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214 #22
lion	MODERN SPECIES	80	NFYC (ENSPLOG00000018570) #8	RIMS3 (ENSPLOG00000018675) #9	ZNF684 (ENSPLOG00000018742) #10	EXO5 (ENSPLOG00000018778)	ZFP69 (ENSPLOG00000018790) #11	ZFP69B (ENSPLOG00000018823) #12	SMAP2 (ENSPLOG00000018892) #13	COL9A2 (ENSPLOG00000018979)	ZMPSTE24 (ENSPLOG00000019179) #15	TMCO2 (ENSPLOG00000019262) #16	RLF (ENSPLOG00000019302) #17	PPT1 (ENSPLOG00000019360) #18	ENSPLOG00000019462 #19	MFSD2A (ENSPLOG00000019565) #20	MYCL (ENSPLOG00000019715) #21	TRIT1 (ENSPLOG00000019799) #22
leopard	MODERN SPECIES	122	NFYC (ENSPPRG00000024994) #8	RIMS3 (ENSPPRG00000024970) #9	ZNF684 (ENSPPRG00000024912) #10	EXO5 (ENSPPRG00000020696)	ZFP69 (ENSPPRG00000024684) #11	ZFP69B (ENSPPRG00000024607) #12	SMAP2 (ENSPPRG00000024039) #13	COL9A2 (ENSPPRG00000023328)	ZMPSTE24 (ENSPPRG00000022765) #15	TMCO2 (ENSPPRG00000022670) #16	RLF (ENSPPRG00000000135) #17	PPT1 (ENSPPRG00000001088) #18	CAP1 (ENSPPRG00000001756) #19	MFSD2A (ENSPPRG00000005280) #20	MYCL (ENSPPRG00000006062) #21	TRIT1 (ENSPPRG00000009680) #22
Tiger	MODERN SPECIES	100	NFYC (ENSPTIG00000018001) #8	RIMS3 (ENSPTIG00000018430) #9	ZNF684 (ENSPTIG00000018626) #10	EXO5 (ENSPTIG00000006394)	ZFP69 (ENSPTIG00000019037) #11	ZFP69B (ENSPTIG00000019160) #12	SMAP2 (ENSPTIG00000019202) #13	COL9A2 (ENSPTIG00000019688)	ZMPSTE24 (ENSPTIG00000019825) #15	TMCO2 (ENSPTIG00000019965) #16	RLF (ENSPTIG00000019984) #17	PPT1 (ENSPTIG00000020102) #18	ENSPTIG00000020510 #19	MFSD2A (ENSPTIG00000020789) #20	MYCL (ENSPTIG00000021086) #21	TRIT1 (ENSPTIG00000021134) #22	PPIE (ENSPTIG00000003196) #25	HPCAL4 (ENSPTIG00000005006) #26	NT5C1A (ENSPTIG00000005350) #27	HEYL (ENSPTIG00000005479) #28	PABPC4 (ENSPTIG00000005829) #29
Cat	MODERN SPECIES	239	NFYC (ENSFCAG00000002915) #8	RIMS3 (ENSFCAG00000002913) #9	ZNF684 (ENSFCAG00000028520) #10	EXO5 (ENSFCAG00000005729)	ZFP69 (ENSFCAG00000033023) #11	ZFP69B (ENSFCAG00000034968) #12	SMAP2 (ENSFCAG00000005726) #13	COL9A2 (ENSFCAG00000046792)	ZMPSTE24 (ENSFCAG00000005722) #15	TMCO2 (ENSFCAG00000013919) #16	RLF (ENSFCAG00000031737) #17	PPT1 (ENSFCAG00000023550) #18	CAP1 (ENSFCAG00000012460) #19	MFSD2A (ENSFCAG00000009858) #20	MYCL (ENSFCAG00000022640) #21	TRIT1 (ENSFCAG00000006029) #22	ENSFCAG00000045792 #24	ENSFCAG00000044436	ENSFCAG00000006027 #25	HPCAL4 (ENSFCAG00000043266) #26	NT5C1A (ENSFCAG00000006025) #27	PABPC4 (ENSFCAG00000015254) #29	ENSFCAG00000035501 #25	ENSFCAG00000050715 #23	ENSFCAG00000043069 #24	MACF1 (ENSFCAG00000045633) #34	NDUFS5 (ENSFCAG00000028222) #35	AKIRIN1 (ENSFCAG00000030569) #36	RHBDL2 (ENSFCAG00000003211) #37	GJA9 (ENSFCAG00000003210)	ENSFCAG00000031119
Caniformia	ANCESTRAL SPECIES	2	ENSGT00940000159332 #9	ENSGT00940000163099 #10	ENSGT00390000015205	ENSGT00940000162278 #11	ENSGT00940000163434 #12	ENSGT00940000158387 #13	ENSGT00940000161290	ENSGT00390000002053 #15	ENSGT00390000001528 #16	ENSGT00950000183034.B #17	ENSGT00940000156790 #18	ENSGT00390000017955.c #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00940000178962	ENSGT00390000015214 #22	ENSGT00940000155272 #24	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000165766	ENSGT00390000002919 #35	ENSGT00940000158787 #36	ENSGT00940000159442 #37	ENSGT01090000260070.C	ENSGT00390000017974	ENSGT00950000183031.A.a.a	ENSGT00940000163458	ENSGT00390000005813
Caniformia_b	ANCESTRAL SPECIES	1	ENSGT00940000155689 #8	ENSGT00940000159332 #9	ENSGT00940000163099 #10	ENSGT00390000015205	ENSGT00940000162278 #11	ENSGT00940000163434 #12	ENSGT00940000158387 #13	ENSGT00940000161290	ENSGT00390000002053 #15	ENSGT00390000001528 #16	ENSGT00950000183034.B #17	ENSGT00940000156790 #18	ENSGT00390000017955.c #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214 #22	ENSGT00940000155272 #24	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000165766	ENSGT00390000002919 #35	ENSGT00940000158787 #36	ENSGT00940000159442 #37	ENSGT01090000260070.C	ENSGT00390000017974	ENSGT00950000183031.A.a.a	ENSGT00940000163458	ENSGT00390000005813
Ursidae	ANCESTRAL SPECIES		ENSGT00940000155689 #8	ENSGT00940000159332 #9	ENSGT00940000163099 #10	ENSGT00390000017955.c.n #19	ENSGT00940000162278 #11	ENSGT00940000163434 #12	ENSGT00940000158387 #13	ENSGT00940000161290	ENSGT00390000002053 #15	ENSGT00390000001528 #16	ENSGT00950000183034.B #17	ENSGT00940000156790.j #18	ENSGT00390000017955.c.m #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214 #22	ENSGT00940000155272 #24	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000165766	ENSGT00390000002919.z.a #35	ENSGT00940000158787 #36	ENSGT00940000159442 #37	ENSGT01090000260070.C	ENSGT00940000165268	ENSGT00390000017974	ENSGT00950000183031.A.a.a	ENSGT00940000163458
Ursus	ANCESTRAL SPECIES	231				ENSGT00940000163099 #10	ENSGT00390000017955.c.n #19	ENSGT00940000162278 #11	ENSGT00940000163434 #12	ENSGT00940000158387 #13	ENSGT00390000002053 #15	ENSGT00390000001528 #16	ENSGT00950000183034.B #17	ENSGT00940000156790.j #18	ENSGT00390000017955.c.m #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214 #22	ENSGT00940000158790 #25
American black bear	DUPLICATION
American black bear	MODERN SPECIES	5266													MFSD2A (ENSUAMG00000000581) #20	MYCL (ENSUAMG00000000568) #21	ENSUAMG00000000522 #22	ENSUAMG00000000509 #22
American black bear	MODERN SPECIES	5266														MFSD2A (ENSUAMG00000000581) #20	MYCL (ENSUAMG00000000568) #21	ENSUAMG00000000522 #22	ENSUAMG00000000509 #22
Polar bear	MODERN SPECIES	473				ZNF684 (ENSUMAG00000017154) #10	ENSUMAG00000017169 #19	ZFP69 (ENSUMAG00000017175) #11	ZFP69B (ENSUMAG00000017193) #12	SMAP2 (ENSUMAG00000017203) #13	ZMPSTE24 (ENSUMAG00000017218) #15	TMCO2 (ENSUMAG00000017224) #16	RLF (ENSUMAG00000017230) #17	PPT1 (ENSUMAG00000017252) #18	ENSUMAG00000017266 #19	MFSD2A (ENSUMAG00000017284) #20	MYCL (ENSUMAG00000017291) #21	TRIT1 (ENSUMAG00000017299) #22	ENSUMAG00000017307 #24	PPIE (ENSUMAG00000017319) #25
Giant Panda	MODERN SPECIES	11	NFYC (ENSAMEG00000011899) #8	RIMS3 (ENSAMEG00000011913) #9	ENSAMEG00000026970	ZNF684 (ENSAMEG00000028572) #10	ENSAMEG00000024599 #19	ZFP69 (ENSAMEG00000031429) #11	SMAP2 (ENSAMEG00000004571) #13	COL9A2 (ENSAMEG00000004524)	ZMPSTE24 (ENSAMEG00000004501) #15	TMCO2 (ENSAMEG00000004499) #16	RLF (ENSAMEG00000004478) #17	PPT1 (ENSAMEG00000004444) #18	ENSAMEG00000004417 #19	MFSD2A (ENSAMEG00000004371) #20	MYCL (ENSAMEG00000023600) #21	TRIT1 (ENSAMEG00000004342) #22	ENSAMEG00000011490 #24	PPIE (ENSAMEG00000007346) #25	HPCAL4 (ENSAMEG00000025990) #26	NT5C1A (ENSAMEG00000011616) #27	HEYL (ENSAMEG00000011612) #28	PABPC4 (ENSAMEG00000011535) #29	ENSAMEG00000026716 #24	ENSAMEG00000027526 #33	MACF1 (ENSAMEG00000010358) #34	ENSAMEG00000010344 #35	AKIRIN1 (ENSAMEG00000028784) #36	RHBDL2 (ENSAMEG00000010323) #37	ENSAMEG00000010319	ENSAMEG00000010315	RRAGC (ENSAMEG00000010297)
Mustelinae	ANCESTRAL SPECIES		ENSGT00940000155689 #8	ENSGT00940000159332 #9	ENSGT00940000163099 #10	ENSGT00390000015205	ENSGT00940000162278 #11	ENSGT00940000163434 #12	ENSGT00940000158387 #13	ENSGT00940000161290	ENSGT00390000002053 #15	ENSGT00390000001528 #16	ENSGT00950000183034.B #17	ENSGT00940000156790 #18	ENSGT00390000017955.c #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214 #22	ENSGT00940000155272 #24	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788.pb #29	ENSGT00730000111729 #33	ENSGT00940000155824.C #34	ENSGT00390000002919 #35	ENSGT00940000158787 #36	ENSGT00940000159442 #37	ENSGT01090000260070.C	ENSGT00390000017974	ENSGT00950000183031.A.a.a	ENSGT00940000163458
American mink	MODERN SPECIES	99	NFYC (ENSNVIG00000015556) #8	RIMS3 (ENSNVIG00000015532) #9	ZNF684 (ENSNVIG00000015518) #10	EXO5 (ENSNVIG00000015513)	ZFP69 (ENSNVIG00000015479) #11	ZFP69B (ENSNVIG00000015457) #12	SMAP2 (ENSNVIG00000015398) #13	COL9A2 (ENSNVIG00000015312)	ZMPSTE24 (ENSNVIG00000015278) #15	TMCO2 (ENSNVIG00000015270) #16	RLF (ENSNVIG00000015255) #17	PPT1 (ENSNVIG00000015174) #18	CAP1 (ENSNVIG00000015095) #19	MFSD2A (ENSNVIG00000014997) #20	MYCL (ENSNVIG00000014970) #21	TRIT1 (ENSNVIG00000014833) #22	ENSNVIG00000014799 #24	PABPC4 (ENSNVIG00000014643) #29	HEYL (ENSNVIG00000014595) #28	NT5C1A (ENSNVIG00000014581) #27	HPCAL4 (ENSNVIG00000014564) #26	PPIE (ENSNVIG00000014547) #25	ENSNVIG00000014528 #24	ENSNVIG00000014522 #33	MACF1 (ENSNVIG00000013435) #34	ENSNVIG00000013364 #35	AKIRIN1 (ENSNVIG00000013340) #36	B3KUN4 (ENSNVIG00000013297) #37	GJA9 (ENSNVIG00000013293)	MYCBP (ENSNVIG00000013279)	RRAGC (ENSNVIG00000013262)
Ferret	MODERN SPECIES	167	ENSMPUG00000014104	KCNQ4 (ENSMPUG00000014105) #7	NFYC (ENSMPUG00000014111) #8	RIMS3 (ENSMPUG00000014121) #9	EXO5 (ENSMPUG00000014127)	ZFP69 (ENSMPUG00000014134) #11	ZFP69B (ENSMPUG00000014137) #12	SMAP2 (ENSMPUG00000014143) #13	COL9A2 (ENSMPUG00000014148)	ZMPSTE24 (ENSMPUG00000014262) #15	RLF (ENSMPUG00000014267) #17	PPT1 (ENSMPUG00000014273) #18	CAP1 (ENSMPUG00000014278) #19	MFSD2A (ENSMPUG00000014281) #20	MYCL (ENSMPUG00000014286) #21	TRIT1 (ENSMPUG00000014291) #22	ENSMPUG00000014337 #24	PPIE (ENSMPUG00000014345) #25	HPCAL4 (ENSMPUG00000014377) #26	NT5C1A (ENSMPUG00000014409) #27	HEYL (ENSMPUG00000014412) #28	ENSMPUG00000014414 #29	ENSMPUG00000014419 #24	MACF1 (ENSMPUG00000014430) #34	AKIRIN1 (ENSMPUG00000014440) #36	ENSMPUG00000014452	RHBDL2 (ENSMPUG00000014455) #37	GJA9 (ENSMPUG00000018591)	RRAGC (ENSMPUG00000014485)	ENSMPUG00000014487	ENSMPUG00000014489
Canidae	ANCESTRAL SPECIES	12	ENSGT00940000163099 #10	ENSGT00390000015205	ENSGT01030000236049.a	ENSGT00940000162278 #11	ENSGT00940000163434 #12	ENSGT00940000158387 #13	ENSGT00940000161290	ENSGT00390000002053 #15	ENSGT00390000001528 #16	ENSGT00950000183034.B #17	ENSGT00940000156790 #18	ENSGT00390000017955.c.o.a #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00940000178962	ENSGT00390000015214 #22	ENSGT00940000178388	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000155272 #24	ENSGT00940000155824.C #34	ENSGT00390000002919 #35	ENSGT00940000158787 #36	ENSGT00940000159442 #37	ENSGT01090000260070.C	ENSGT00390000017974	ENSGT00950000183031.A.a.a	ENSGT00940000163458
Canis_lupus	ANCESTRAL SPECIES	16	ENSGT00940000159332 #9	ENSGT00390000003156.a.b.q.b	ENSGT00940000163099 #10	ENSGT00390000015205	ENSGT01030000236049.a	ENSGT00940000163434 #12	ENSGT00940000158387 #13	ENSGT00940000161290	ENSGT00390000002053 #15	ENSGT00390000001528 #16	ENSGT00950000183034.B #17	ENSGT00940000156790 #18	ENSGT00390000017955.c.o.a #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214 #22	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000155272 #24	ENSGT00940000155824.C #34	ENSGT00390000002919 #35	ENSGT00940000158787 #36	ENSGT00940000159442 #37	ENSGT01090000260070.C	ENSGT00390000017974	ENSGT00950000183031.A.a.a	ENSGT00940000163458	ENSGT00390000005813
Dingo	MODERN SPECIES	344	RIMS3 (ENSCAFG00020003384) #9	ENSCAFG00020003387	ZNF684 (ENSCAFG00020003394) #10	EXO5 (ENSCAFG00020003399)	ENSCAFG00020003403	ZFP69B (ENSCAFG00020003410) #12	SMAP2 (ENSCAFG00020003411) #13	COL9A2 (ENSCAFG00020003418)	ZMPSTE24 (ENSCAFG00020003431) #15	TMCO2 (ENSCAFG00020003438) #16	RLF (ENSCAFG00020003446) #17	PPT1 (ENSCAFG00020003461) #18	ENSCAFG00020003484 #19	MFSD2A (ENSCAFG00020003855) #20	MYCL (ENSCAFG00020003867) #21	TRIT1 (ENSCAFG00020003875) #22	ENSCAFG00020004108 #24	PPIE (ENSCAFG00020004132) #25	HPCAL4 (ENSCAFG00020004133) #26	NT5C1A (ENSCAFG00020004154) #27	HEYL (ENSCAFG00020004158) #28	PABPC4 (ENSCAFG00020004161) #29	ENSCAFG00020004186 #24	ENSCAFG00020004281 #34	ENSCAFG00020005975 #34	NDUFS5 (ENSCAFG00020006129) #35	ENSCAFG00020006133 #36	RHBDL2 (ENSCAFG00020006136) #37	GJA9 (ENSCAFG00020006141)	ENSCAFG00020006145	RRAGC (ENSCAFG00020006162)
Dog	MODERN SPECIES	6	RIMS3 (ENSCAFG00845009552) #9	ENSCAFG00845009641	ZNF684 (ENSCAFG00845009658) #10	EXO5 (ENSCAFG00845009682)	ENSCAFG00845009699	ZFP69B (ENSCAFG00845009753) #12	SMAP2 (ENSCAFG00845009938) #13	COL9A2 (ENSCAFG00845010158)	ZMPSTE24 (ENSCAFG00845010326) #15	TMCO2 (ENSCAFG00845010398) #16	RLF (ENSCAFG00845010433) #17	PPT1 (ENSCAFG00845010701) #18	CAP1 (ENSCAFG00845010977) #19	MYCL (ENSCAFG00845011043) #21	MFSD2A (ENSCAFG00845011113) #20	TRIT1 (ENSCAFG00845011261) #22	ENSCAFG00845011459 #24	PPIE (ENSCAFG00845011567) #25	HPCAL4 (ENSCAFG00845011679) #26	NT5C1A (ENSCAFG00845011699) #27	HEYL (ENSCAFG00845011723) #28	PABPC4 (ENSCAFG00845011755) #29	ENSCAFG00845011882 #24	MACF1 (ENSCAFG00845017426) #34	NDUFS5 (ENSCAFG00845030086) #35	ENSCAFG00845030105 #36	RHBDL2 (ENSCAFG00845030132) #37	GJA9 (ENSCAFG00845030152)	MYCBP (ENSCAFG00845030166)	RRAGC (ENSCAFG00845030180)	POU3F1 (ENSCAFG00845030221)
Red fox	DUPLICATION
Red fox	MODERN SPECIES	183	ZNF684 (ENSVVUG00000005082) #10	EXO5 (ENSVVUG00000005087)	ENSVVUG00000005091	ZFP69 (ENSVVUG00000005095) #11	ZFP69B (ENSVVUG00000005101) #12	SMAP2 (ENSVVUG00000005115) #13	ENSVVUG00000005124	ZMPSTE24 (ENSVVUG00000005159) #15	TMCO2 (ENSVVUG00000005166) #16	RLF (ENSVVUG00000005167) #17	PPT1 (ENSVVUG00000005177) #18	CAP1 (ENSVVUG00000005182) #19	MFSD2A (ENSVVUG00000005183) #20	MYCL (ENSVVUG00000005189) #21	ENSVVUG00000005199	ENSVVUG00000005200 #22	ENSVVUG00000005204	ENSVVUG00000005208 #22	ENSVVUG00000005210 #24	PABPC4 (ENSVVUG00000005215) #29	HEYL (ENSVVUG00000005234) #28	NT5C1A (ENSVVUG00000005242) #27	HPCAL4 (ENSVVUG00000005260) #26	ENSVVUG00000005268 #25
Red fox	MODERN SPECIES	183	ENSVVUG00000005091	ZFP69 (ENSVVUG00000005095) #11	ZFP69B (ENSVVUG00000005101) #12	SMAP2 (ENSVVUG00000005115) #13	ENSVVUG00000005124	ZMPSTE24 (ENSVVUG00000005159) #15	TMCO2 (ENSVVUG00000005166) #16	RLF (ENSVVUG00000005167) #17	PPT1 (ENSVVUG00000005177) #18	CAP1 (ENSVVUG00000005182) #19	MFSD2A (ENSVVUG00000005183) #20	MYCL (ENSVVUG00000005189) #21	ENSVVUG00000005199	ENSVVUG00000005200 #22	ENSVVUG00000005204	ENSVVUG00000005208 #22	ENSVVUG00000005210 #24	PABPC4 (ENSVVUG00000005215) #29	HEYL (ENSVVUG00000005234) #28	NT5C1A (ENSVVUG00000005242) #27	HPCAL4 (ENSVVUG00000005260) #26	ENSVVUG00000005268 #25
Laurasiatheria_c	ANCESTRAL SPECIES		ENSGT00940000155689 #8	ENSGT00940000159332 #9	ENSGT00940000163099 #10	ENSGT00390000015205	ENSGT00940000162278 #11	ENSGT00940000163434 #12	ENSGT00940000158387 #13	ENSGT00940000161290	ENSGT00390000002053 #15	ENSGT00390000001528 #16	ENSGT00950000183034.B #17	ENSGT00940000156790 #18	ENSGT00390000017955.c #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214 #22	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000158790 #25	ENSGT00390000009130.a.b #23	ENSGT00940000155272 #24	ENSGT00940000155824.C #34	ENSGT00730000111729 #33	ENSGT00390000002919 #35	ENSGT00940000158787 #36	ENSGT00940000159442 #37	ENSGT01090000260070.C	ENSGT00390000017974	ENSGT00950000183031.A.a.a
Chiroptera	ANCESTRAL SPECIES		ENSGT00940000155689 #8	ENSGT00940000159332 #9	ENSGT00940000163099 #10	ENSGT00390000015205	ENSGT00940000162278 #11	ENSGT00940000163434 #12	ENSGT00940000158387 #13	ENSGT00940000161290	ENSGT00390000002053 #15	ENSGT00390000001528 #16	ENSGT00950000183034.B #17	ENSGT00940000156790 #18	ENSGT00390000017955.c #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214 #22	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000158790 #25	ENSGT00940000155272 #24	ENSGT00940000155824.C #34	ENSGT00730000111729 #33	ENSGT00390000002919 #35	ENSGT00940000158787 #36	ENSGT00940000159442 #37	ENSGT00390000017974	ENSGT00950000183031.A.a.a	ENSGT00940000163458	ENSGT00390000005813
Microchiroptera	ANCESTRAL SPECIES	1	ENSGT00940000155689 #8	ENSGT00940000159332 #9	ENSGT00940000163099 #10	ENSGT00390000015205	ENSGT00940000162278 #11	ENSGT00940000163434 #12	ENSGT00940000158387 #13	ENSGT00940000161290	ENSGT00390000002053 #15	ENSGT00390000001528 #16	ENSGT00950000183034.B #17	ENSGT00940000156790 #18	ENSGT00390000017955.c #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214 #22	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000158790 #25	ENSGT00940000155272 #24	ENSGT00940000155824.C #34	ENSGT00730000111729 #33	ENSGT00390000002919 #35	ENSGT00940000158787 #36	ENSGT00940000159442 #37	ENSGT00390000017974	ENSGT00950000183031.A.a.a	ENSGT00940000163458	ENSGT00390000005813
Greater horseshoe bat	MODERN SPECIES	27	RIMS3 (ENSRFEG00010005135) #9	ZNF684 (ENSRFEG00010004917) #10	EXO5 (ENSRFEG00010004913)	ZFP69 (ENSRFEG00010004907) #11	ZFP69B (ENSRFEG00010004898) #12	SMAP2 (ENSRFEG00010004874) #13	COL9A2 (ENSRFEG00010004846)	ZMPSTE24 (ENSRFEG00010004824) #15	TMCO2 (ENSRFEG00010004812) #16	ENSRFEG00010004804	RLF (ENSRFEG00010004791) #17	PPT1 (ENSRFEG00010004763) #18	ENSRFEG00010004740 #19	MFSD2A (ENSRFEG00010004694) #20	MYCL (ENSRFEG00010004654) #21	TRIT1 (ENSRFEG00010004607) #22	ENSRFEG00010004561 #24	ENSRFEG00010004530 #25	HPCAL4 (ENSRFEG00010004498) #26	NT5C1A (ENSRFEG00010004485) #27	HEYL (ENSRFEG00010004468) #28	PABPC4 (ENSRFEG00010004353) #29	ENSRFEG00010004310 #25	ENSRFEG00010004273 #24	MACF1 (ENSRFEG00010003811) #34	NDUFS5 (ENSRFEG00010004262) #35	ENSRFEG00010003392 #36	RHBDL2 (ENSRFEG00010003362) #37	ENSRFEG00010003323	RRAGC (ENSRFEG00010003302)	ENSRFEG00010003286
Microbat	MODERN SPECIES	1159	POMGNT1 (ENSMLUG00000003749)	RAD54L (ENSMLUG00000003763)	LRRC41 (ENSMLUG00000003773)	ENSMLUG00000003779	ENSMLUG00000025295	SMAP2 (ENSMLUG00000006849) #13	COL9A2 (ENSMLUG00000001585)	ZMPSTE24 (ENSMLUG00000026592) #15	TMCO2 (ENSMLUG00000001582) #16	RLF (ENSMLUG00000001580) #17	PPT1 (ENSMLUG00000011644) #18	CAP1 (ENSMLUG00000011626) #19	ENSMLUG00000009660	MFSD2A (ENSMLUG00000000339) #20	MYCL (ENSMLUG00000000337) #21	TRIT1 (ENSMLUG00000000334) #22	ENSMLUG00000009236
Megabat	MODERN SPECIES	723														MFSD2A (ENSPVAG00000003348) #20	MYCL (ENSPVAG00000003347) #21	TRIT1 (ENSPVAG00000003344) #22
Equus	ANCESTRAL SPECIES	2	ENSGT00940000155689 #8	ENSGT00940000159332 #9	ENSGT00940000163099 #10	ENSGT00390000015205	ENSGT00940000162278 #11	ENSGT00940000163434 #12	ENSGT00940000158387 #13	ENSGT00390000002053 #15	ENSGT00390000001528 #16	ENSGT00950000183034.B #17	ENSGT00940000156790 #18	ENSGT00390000017955.c #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000003897.s.a	ENSGT00390000015214 #22	ENSGT00940000155272 #24	ENSGT00940000158790.f #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000158790.e.a #25	ENSGT00390000009130.a.b #23	ENSGT00940000155824.C #34	ENSGT00390000002919 #35	ENSGT00940000158787 #36	ENSGT00940000159442 #37	ENSGT01090000260070.C	ENSGT00390000017974	ENSGT00950000183031.A.a.a
Horse	MODERN SPECIES	11	ENSECAG00000047147 #10	EXO5 (ENSECAG00000004928)	ZFP69 (ENSECAG00000022039) #11	ZFP69B (ENSECAG00000023120) #12	SMAP2 (ENSECAG00000024413) #13	COL9A2 (ENSECAG00000010971) #14	ZMPSTE24 (ENSECAG00000007773) #15	TMCO2 (ENSECAG00000037648) #16	RLF (ENSECAG00000012776) #17	PPT1 (ENSECAG00000017370) #18	CAP1 (ENSECAG00000024658) #19	ENSECAG00000052677	MFSD2A (ENSECAG00000013728) #20	MYCL (ENSECAG00000008765) #21	ENSECAG00000038999	TRIT1 (ENSECAG00000010597) #22	ENSECAG00000008528 #24	ENSECAG00000031692 #25	HPCAL4 (ENSECAG00000019203) #26	NT5C1A (ENSECAG00000019710) #27	HEYL (ENSECAG00000007220) #28	PABPC4 (ENSECAG00000009396) #29	ENSECAG00000038706 #25	OXCT2 (ENSECAG00000010065) #23	MACF1 (ENSECAG00000013366) #34	NDUFS5 (ENSECAG00000011681) #35	AKIRIN1 (ENSECAG00000012589) #36	RHBDL2 (ENSECAG00000015194) #37	GJA9 (ENSECAG00000004967)	RRAGC (ENSECAG00000019915)	POU3F1 (ENSECAG00000026886)
Donkey	MODERN SPECIES	25	EXO5 (ENSEASG00005037469)	ZNF684 (ENSEASG00005027767) #10	ZFP69 (ENSEASG00005035436) #11	ZFP69B (ENSEASG00005001020) #12	SMAP2 (ENSEASG00005001012) #13	ENSEASG00005000994 #14	ZMPSTE24 (ENSEASG00005000980) #15	TMCO2 (ENSEASG00005000974) #16	RLF (ENSEASG00005000935) #17	ENSEASG00005000926 #18	ENSEASG00005026058 #18	CAP1 (ENSEASG00005000919) #19	MFSD2A (ENSEASG00005000914) #20	MYCL (ENSEASG00005000909) #21	ENSEASG00005000897	TRIT1 (ENSEASG00005000884) #22	ENSEASG00005031332 #24	ENSEASG00005014118 #25	HPCAL4 (ENSEASG00005030469) #26	NT5C1A (ENSEASG00005014123) #27	ENSEASG00005014122 #28	ENSEASG00005014119 #29	ENSEASG00005014125 #25	ENSEASG00005035819 #23	ENSEASG00005038346 #24	MACF1 (ENSEASG00005013583) #34	NDUFS5 (ENSEASG00005013292) #35	AKIRIN1 (ENSEASG00005013289) #36	RHBDL2 (ENSEASG00005013286) #37	GJA9 (ENSEASG00005013284)	ENSEASG00005028821
Eulipotyphla	ANCESTRAL SPECIES	2520																ENSGT00390000015214 #22	ENSGT00940000164770
Common shrew	MODERN SPECIES	2211																TRIT1 (ENSSARG00000004540) #22	ENSSARG00000004500
Hedgehog	MODERN SPECIES	2867																TRIT1 (ENSEEUG00000009269) #22
Euarchontoglires	ANCESTRAL SPECIES		ENSGT00940000155689 #8	ENSGT00940000159332 #9	ENSGT00940000163099 #10	ENSGT00390000015205	ENSGT00940000162278 #11	ENSGT00940000163434 #12	ENSGT00940000158387 #13	ENSGT00940000161290	ENSGT00390000002053 #15	ENSGT00390000001528 #16	ENSGT00950000183034.B #17	ENSGT00940000156790 #18	ENSGT00390000017955.c #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214 #22	ENSGT00940000164770	ENSGT00390000009130.a.b #23	ENSGT00940000155272 #24	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000155824.C #34	ENSGT00730000111729 #33	ENSGT00390000002919 #35	ENSGT00940000158787 #36	ENSGT00940000159442 #37	ENSGT01090000260070.C	ENSGT00390000017974
Euarchontoglires_A	ANCESTRAL SPECIES		ENSGT00940000155689 #8	ENSGT00940000159332 #9	ENSGT00940000163099 #10	ENSGT00390000015205	ENSGT00940000162278 #11	ENSGT00940000163434 #12	ENSGT00940000158387 #13	ENSGT00940000161290	ENSGT00390000002053 #15	ENSGT00390000001528 #16	ENSGT00950000183034.B #17	ENSGT00940000156790 #18	ENSGT00390000017955.c #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214 #22	ENSGT00940000164770	ENSGT00390000009130.a.b #23	ENSGT00940000155272 #24	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00980000198642	ENSGT00940000155824.C #34	ENSGT00730000111729 #33	ENSGT00390000002919 #35	ENSGT00940000158787 #36	ENSGT00940000159442 #37	ENSGT01090000260070.C
Tree shrew	MODERN SPECIES	1168												PPT1 (ENSTBEG00000005886) #18	CAP1 (ENSTBEG00000005022) #19	MFSD2A (ENSTBEG00000003227) #20	MYCL (ENSTBEG00000002060) #21	TRIT1 (ENSTBEG00000001317) #22
Glires	ANCESTRAL SPECIES		ENSGT00940000155689 #8	ENSGT00940000159332 #9	ENSGT00940000163099 #10	ENSGT00390000015205	ENSGT00940000162278 #11	ENSGT00940000163434 #12	ENSGT00940000158387 #13	ENSGT00940000161290	ENSGT00390000002053 #15	ENSGT00390000001528 #16	ENSGT00950000183034.B #17	ENSGT00940000156790 #18	ENSGT00390000017955.c #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214 #22	ENSGT00940000164770	ENSGT00390000009130.a.b #23	ENSGT00940000155272 #24	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00980000198642	ENSGT00940000155824.C #34	ENSGT00730000111729 #33	ENSGT00390000002919 #35	ENSGT00940000158787 #36	ENSGT00940000159442 #37	ENSGT01090000260070.C
Lagomorpha	ANCESTRAL SPECIES	8	ENSGT00940000159209 #7	ENSGT00940000155689 #8	ENSGT00940000159332 #9	ENSGT00940000163099 #10	ENSGT00390000015205	ENSGT00940000162278 #11	ENSGT00940000158387 #13	ENSGT00940000161290	ENSGT00390000002053 #15	ENSGT00390000001528 #16	ENSGT00950000183034.B #17	ENSGT00940000156790 #18	ENSGT00390000017955.c #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214 #22	ENSGT00940000155272 #24	ENSGT00940000154788 #29	ENSGT00390000009130.a.b #23	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28
Rabbit	MODERN SPECIES	4	KCNQ4 (ENSOCUG00000015852) #7	NFYC (ENSOCUG00000025540) #8	RIMS3 (ENSOCUG00000014068) #9	ENSOCUG00000030737 #10	EXO5 (ENSOCUG00000016005)	ZFP69 (ENSOCUG00000016000) #11	SMAP2 (ENSOCUG00000015858) #13	COL9A2 (ENSOCUG00000015838)	ZMPSTE24 (ENSOCUG00000015825) #15	TMCO2 (ENSOCUG00000017275) #16	RLF (ENSOCUG00000017263) #17	PPT1 (ENSOCUG00000012796) #18	ENSOCUG00000012790 #19	MFSD2A (ENSOCUG00000001028) #20	MYCL (ENSOCUG00000025113) #21	TRIT1 (ENSOCUG00000002054) #22	ENSOCUG00000007677 #24	ENSOCUG00000031949 #23	PPIE (ENSOCUG00000007665) #25	HPCAL4 (ENSOCUG00000022645) #26	NT5C1A (ENSOCUG00000004298) #27	HEYL (ENSOCUG00000000560) #28	PABPC4 (ENSOCUG00000000562) #29	ENSOCUG00000023797 #24	ENSOCUG00000032823 #23	MACF1 (ENSOCUG00000000677) #34	ENSOCUG00000022318 #33	NDUFS5 (ENSOCUG00000024417) #35	ENSOCUG00000005500 #36	RHBDL2 (ENSOCUG00000016197) #37	GJA9 (ENSOCUG00000016515)
Pika	MODERN SPECIES	701															ENSOPRG00000003229 #21	ENSOPRG00000003205 #22	ENSOPRG00000003172
Rodentia	ANCESTRAL SPECIES		ENSGT00940000155689 #8	ENSGT00940000159332 #9	ENSGT00940000163099 #10	ENSGT00390000015205	ENSGT00940000162278 #11	ENSGT00940000163434 #12	ENSGT00940000158387 #13	ENSGT00940000161290	ENSGT00390000002053 #15	ENSGT00390000001528 #16	ENSGT00950000183034.B #17	ENSGT00940000156790 #18	ENSGT00390000017955.c #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214 #22	ENSGT00940000164770	ENSGT00390000009130.a.b #23	ENSGT00940000155272 #24	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00980000198642	ENSGT00940000155824.C #34	ENSGT00730000111729 #33	ENSGT00390000002919 #35	ENSGT00940000158787 #36	ENSGT00940000159442 #37	ENSGT01090000260070.C
Rodentia_A	ANCESTRAL SPECIES		ENSGT00940000155689 #8	ENSGT00940000159332 #9	ENSGT00940000163099 #10	ENSGT00390000015205	ENSGT00940000162278 #11	ENSGT00940000163434 #12	ENSGT00940000158387 #13	ENSGT00940000161290	ENSGT00390000002053 #15	ENSGT00390000001528 #16	ENSGT00950000183034.B #17	ENSGT00940000156790 #18	ENSGT00390000017955.c #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214 #22	ENSGT00390000009130.a.b #23	ENSGT00940000155272 #24	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000164770	ENSGT00980000198642	ENSGT00940000155824.C #34	ENSGT00730000111729 #33	ENSGT00390000002919 #35	ENSGT00940000158787 #36	ENSGT00940000159442 #37	ENSGT01090000260070.C
Sciuridae	ANCESTRAL SPECIES	3	ENSGT00940000155689 #8	ENSGT00940000159332 #9	ENSGT00940000163099 #10	ENSGT00390000015205	ENSGT00940000162278 #11	ENSGT00940000163434 #12	ENSGT00940000158387 #13	ENSGT00940000161290	ENSGT00390000002053 #15	ENSGT00390000001528 #16	ENSGT00950000183034.B #17	ENSGT00940000156790 #18	ENSGT00390000017955.c #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214 #22	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00390000009130.a.b #23	ENSGT00940000155272 #24	ENSGT00940000155824.C #34	ENSGT00730000111729 #33	ENSGT00390000002919 #35	ENSGT00940000158787 #36	ENSGT00940000159442 #37	ENSGT01090000260070.C	ENSGT00390000017974	ENSGT00950000183031.A.a.a
Marmotini	ANCESTRAL SPECIES		ENSGT00940000159332 #9	ENSGT00940000163099 #10	ENSGT00390000015205	ENSGT00940000162278 #11	ENSGT00940000163434 #12	ENSGT00940000158387 #13	ENSGT00940000161290	ENSGT00390000002053 #15	ENSGT00390000001528 #16	ENSGT00950000183034.B #17	ENSGT00940000156790 #18	ENSGT00390000017955.c #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00960000186932	ENSGT00390000015214 #22	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000155272 #24	ENSGT00940000155824.C #34	ENSGT00390000002919.l #35	ENSGT00730000111729 #33	ENSGT00390000002919.k.b #35	ENSGT00940000158787 #36	ENSGT00940000159442 #37	ENSGT01090000260070.C	ENSGT00390000017974	ENSGT00950000183031.A.a.a
Marmotini_b	ANCESTRAL SPECIES		ENSGT00940000155689 #8	ENSGT00940000159332 #9	ENSGT00390000015205	ENSGT00940000162278 #11	ENSGT00940000163434 #12	ENSGT00940000158387 #13	ENSGT00940000161290	ENSGT00390000002053 #15	ENSGT00390000001528 #16	ENSGT00950000183034.B #17	ENSGT00940000156790 #18	ENSGT00390000017955.c #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00960000186932	ENSGT00390000015214 #22	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000155272 #24	ENSGT00940000155824.C #34	ENSGT00390000002919.l #35	ENSGT00730000111729 #33	ENSGT00390000002919.k.a #35	ENSGT00940000158787 #36	ENSGT00940000159442 #37	ENSGT01090000260070.C	ENSGT00390000017974	ENSGT00950000183031.A.a.a
Arctic ground squirrel	MODERN SPECIES	120									TMCO2 (ENSUPAG00010016423) #16	RLF (ENSUPAG00010016437) #17	ENSUPAG00010016456 #18	CAP1 (ENSUPAG00010016461) #19	MFSD2A (ENSUPAG00010016486) #20	MYCL (ENSUPAG00010016508) #21	ENSUPAG00010016518	TRIT1 (ENSUPAG00010016523) #22	PPIE (ENSUPAG00010016536) #25	HPCAL4 (ENSUPAG00010016554) #26	NT5C1A (ENSUPAG00010016564) #27	HEYL (ENSUPAG00010016578) #28	ENSUPAG00010016593 #29	ENSUPAG00010016600 #29	MACF1 (ENSUPAG00010016632) #34	ENSUPAG00010016776 #33	NDUFS5 (ENSUPAG00010016787) #35	ENSUPAG00010016799 #36	RHBDL2 (ENSUPAG00010016814) #37	GJA9 (ENSUPAG00010016834)	MYCBP (ENSUPAG00010016841)	RRAGC (ENSUPAG00010016855)	POU3F1 (ENSUPAG00010016876)
Squirrel	MODERN SPECIES	74	RIMS3 (ENSSTOG00000001897) #9	EXO5 (ENSSTOG00000007049)	ZFP69 (ENSSTOG00000031462) #11	ZFP69B (ENSSTOG00000009229) #12	SMAP2 (ENSSTOG00000005913) #13	COL9A2 (ENSSTOG00000005862)	ZMPSTE24 (ENSSTOG00000020016) #15	TMCO2 (ENSSTOG00000004814) #16	ENSSTOG00000022071 #17	ENSSTOG00000033898 #17	PPT1 (ENSSTOG00000005065) #18	CAP1 (ENSSTOG00000022338) #19	MFSD2A (ENSSTOG00000005042) #20	MYCL (ENSSTOG00000005037) #21	ENSSTOG00000034207	TRIT1 (ENSSTOG00000006446) #22	ENSSTOG00000031537 #24	PPIE (ENSSTOG00000010445) #25	HPCAL4 (ENSSTOG00000033957) #26	NT5C1A (ENSSTOG00000010430) #27	HEYL (ENSSTOG00000010427) #28	PABPC4 (ENSSTOG00000010416) #29	ENSSTOG00000029371 #24	MACF1 (ENSSTOG00000028672) #34	NDUFS5 (ENSSTOG00000011059) #35	ENSSTOG00000030751	AKIRIN1 (ENSSTOG00000023219) #36	RHBDL2 (ENSSTOG00000027167) #37	GJA9 (ENSSTOG00000027990)	MYCBP (ENSSTOG00000021547)	RRAGC (ENSSTOG00000011043)
Alpin marmot	MODERN SPECIES	15	NFYC (ENSMMMG00000002381) #8	RIMS3 (ENSMMMG00000002414) #9	ZNF684 (ENSMMMG00000002456) #10	EXO5 (ENSMMMG00000002472)	ZFP69 (ENSMMMG00000002478) #11	ZFP69B (ENSMMMG00000002528) #12	SMAP2 (ENSMMMG00000002536) #13	ENSMMMG00000002633 #15	TMCO2 (ENSMMMG00000002664) #16	RLF (ENSMMMG00000002678) #17	PPT1 (ENSMMMG00000002699) #18	CAP1 (ENSMMMG00000002734) #19	MFSD2A (ENSMMMG00000002807) #20	MYCL (ENSMMMG00000002838) #21	ENSMMMG00000002850	TRIT1 (ENSMMMG00000002859) #22	PPIE (ENSMMMG00000002879) #25	HPCAL4 (ENSMMMG00000002894) #26	NT5C1A (ENSMMMG00000002912) #27	HEYL (ENSMMMG00000002927) #28	PABPC4 (ENSMMMG00000002940) #29	MACF1 (ENSMMMG00000003103) #34	ENSMMMG00000003276 #33	ENSMMMG00000003287 #35	ENSMMMG00000003299 #36	ENSMMMG00000003320	RHBDL2 (ENSMMMG00000003332) #37	GJA9 (ENSMMMG00000003355)	ENSMMMG00000003363	RRAGC (ENSMMMG00000003368)	UTP11 (ENSMMMG00000003393)
Eurasian red squirrel	MODERN SPECIES		RIMS3 (ENSSVLG00005009202) #9	ENSSVLG00005009174	ENSSVLG00005009149	EXO5 (ENSSVLG00005009138)	ZFP69 (ENSSVLG00005009085) #11	ZFP69B (ENSSVLG00005009014) #12	SMAP2 (ENSSVLG00005008838) #13	COL9A2 (ENSSVLG00005008637)	ZMPSTE24 (ENSSVLG00005008594) #15	TMCO2 (ENSSVLG00005007276) #16	RLF (ENSSVLG00005007220) #17	PPT1 (ENSSVLG00005007110) #18	ENSSVLG00005007032 #19	MFSD2A (ENSSVLG00005006874) #20	MYCL (ENSSVLG00005006832) #21	TRIT1 (ENSSVLG00005006559) #22	ENSSVLG00005006472 #24	PPIE (ENSSVLG00005006402) #25	HPCAL4 (ENSSVLG00005006346) #26	NT5C1A (ENSSVLG00005006307) #27	HEYL (ENSSVLG00005006277) #28	PABPC4 (ENSSVLG00005006197) #29	ENSSVLG00005006142 #23	ENSSVLG00005006096 #24	MACF1 (ENSSVLG00005004041) #34	NDUFS5 (ENSSVLG00005003321) #35	AKIRIN1 (ENSSVLG00005003301) #36	RHBDL2 (ENSSVLG00005003273) #37	GJA9 (ENSSVLG00005003263)	ENSSVLG00005003250	ENSSVLG00005003228
Hystricomorpha	ANCESTRAL SPECIES	4	ENSGT00940000159209 #7	ENSGT00940000155689 #8	ENSGT00940000159332 #9	ENSGT00940000163099 #10	ENSGT00390000015205	ENSGT00940000162278 #11	ENSGT00940000158387 #13	ENSGT00940000161290	ENSGT00390000002053 #15	ENSGT00390000001528 #16	ENSGT00950000183034.B #17	ENSGT00940000156790 #18	ENSGT00390000017955.c #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214 #22	ENSGT00390000009130.a.b #23	ENSGT00940000155272 #24	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000164770	ENSGT00980000198642	ENSGT00940000155824.C #34	ENSGT00390000002919 #35	ENSGT00940000158787 #36	ENSGT00940000159442 #37	ENSGT00390000017974.v	ENSGT00390000017974.u.b
Hystricomorpha_a	ANCESTRAL SPECIES	1	ENSGT00530000063624.C	ENSGT00940000159209 #7	ENSGT00940000155689 #8	ENSGT00940000159332 #9	ENSGT00390000015205	ENSGT00940000162278 #11	ENSGT00940000158387 #13	ENSGT00940000161290	ENSGT00390000002053 #15	ENSGT00390000001528 #16	ENSGT00950000183034.B #17	ENSGT00940000156790 #18	ENSGT00390000017955.c #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214 #22	ENSGT00390000009130.a.b #23	ENSGT00940000155272 #24	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000164770	ENSGT00980000198642	ENSGT00940000155824.C #34	ENSGT00390000002919 #35	ENSGT00940000158787 #36	ENSGT00940000159442 #37	ENSGT00390000017974.u.b	ENSGT00860000135887
Hystricomorpha_b	ANCESTRAL SPECIES	7										ENSGT00390000001528 #16	ENSGT00950000183034.B #17	ENSGT00940000156790 #18	ENSGT00390000017955.c #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214 #22	ENSGT00940000155272 #24	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00980000198642	ENSGT00940000155824.C #34	ENSGT00390000002919 #35	ENSGT00940000158787 #36	ENSGT00940000159442 #37	ENSGT00390000017974.u.b	ENSGT00860000135887	ENSGT00950000183031.A.a.a	ENSGT00940000163458
Long-tailed chinchilla	MODERN SPECIES	159										TMCO2 (ENSCLAG00000013078) #16	RLF (ENSCLAG00000009565) #17	PPT1 (ENSCLAG00000009987) #18	CAP1 (ENSCLAG00000009526) #19	MFSD2A (ENSCLAG00000011973) #20	MYCL (ENSCLAG00000010158) #21	TRIT1 (ENSCLAG00000009828) #22	PPIE (ENSCLAG00000010288) #25	HPCAL4 (ENSCLAG00000009571) #26	NT5C1A (ENSCLAG00000011943) #27	ENSCLAG00000018068	HEYL (ENSCLAG00000012566) #28	PABPC4 (ENSCLAG00000011899) #29	MACF1 (ENSCLAG00000011083) #34	NDUFS5 (ENSCLAG00000009162) #35	AKIRIN1 (ENSCLAG00000014736) #36	RHBDL2 (ENSCLAG00000012649) #37	ENSCLAG00000010129	ENSCLAG00000009189	RRAGC (ENSCLAG00000014225)	UTP11 (ENSCLAG00000012521)	FHL3 (ENSCLAG00000010530)
Degu	MODERN SPECIES	171							ENSODEG00000007201	ENSODEG00000019277	TMCO2 (ENSODEG00000008442) #16	RLF (ENSODEG00000007661) #17	ENSODEG00000019420	PPT1 (ENSODEG00000006483) #18	ENSODEG00000006778 #19	MFSD2A (ENSODEG00000008097) #20	MYCL (ENSODEG00000007752) #21	TRIT1 (ENSODEG00000006117) #22	ENSODEG00000007914 #24	ENSODEG00000007670 #25	HPCAL4 (ENSODEG00000007714) #26	NT5C1A (ENSODEG00000008226) #27	HEYL (ENSODEG00000006313) #28	ENSODEG00000019223	ENSODEG00000006592 #29	ENSODEG00000006675	ENSODEG00000006963 #34	ENSODEG00000006381 #34	NDUFS5 (ENSODEG00000006145) #35	ENSODEG00000006600 #36	RHBDL2 (ENSODEG00000007151) #37	ENSODEG00000019387	ENSODEG00000006834
Guinea pig	MODERN SPECIES	143						EXO5 (ENSCPOG00000039403)	ZFP69 (ENSCPOG00000039050) #11	SMAP2 (ENSCPOG00000011534) #13	ZMPSTE24 (ENSCPOG00000011521) #15	TMCO2 (ENSCPOG00000004615) #16	RLF (ENSCPOG00000013002) #17	PPT1 (ENSCPOG00000005754) #18	ENSCPOG00000005746 #19	MFSD2A (ENSCPOG00000012982) #20	MYCL (ENSCPOG00000036849) #21	TRIT1 (ENSCPOG00000012820) #22	OXCT2 (ENSCPOG00000024317) #23	ENSCPOG00000019366 #24	PPIE (ENSCPOG00000007365) #25	HPCAL4 (ENSCPOG00000038678) #26	NT5C1A (ENSCPOG00000039653) #27	HEYL (ENSCPOG00000038617) #28	PABPC4 (ENSCPOG00000009552) #29	ENSCPOG00000021540	MACF1 (ENSCPOG00000010588) #34	NDUFS5 (ENSCPOG00000033659) #35	AKIRIN1 (ENSCPOG00000031693) #36	RHBDL2 (ENSCPOG00000022360) #37	H2AZ1 (ENSCPOG00000003879)	MYCBP (ENSCPOG00000020447)	ENSCPOG00000033169
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	26	RIMS3 (ENSHGLG00000003243) #9	ZNF684 (ENSHGLG00000039044) #10	EXO5 (ENSHGLG00000016741)	SMAP2 (ENSHGLG00000044537) #13	COL9A2 (ENSHGLG00000014385)	ZMPSTE24 (ENSHGLG00000047091) #15	TMCO2 (ENSHGLG00000012956) #16	ENSHGLG00000017963	RLF (ENSHGLG00000012491) #17	ENSHGLG00000035541	PPT1 (ENSHGLG00000011635) #18	ENSHGLG00000011409 #19	ENSHGLG00000049961	MFSD2A (ENSHGLG00000010975) #20	MYCL (ENSHGLG00000035021) #21	ENSHGLG00000010308 #22	ENSHGLG00000033839 #24	PABPC4 (ENSHGLG00000011162) #29	NT5C1A (ENSHGLG00000040411) #27	HPCAL4 (ENSHGLG00000037547) #26	PPIE (ENSHGLG00000012598) #25	ENSHGLG00000013430 #24	MACF1 (ENSHGLG00000012916) #34	NDUFS5 (ENSHGLG00000040333) #35	ENSHGLG00000010032 #36	RHBDL2 (ENSHGLG00000035014) #37	MYCBP (ENSHGLG00000049839)	RRAGC (ENSHGLG00000016185)	POU3F1 (ENSHGLG00000034082)	UTP11L (ENSHGLG00000037948)	FHL3 (ENSHGLG00000014086)
Naked mole-rat female	MODERN SPECIES	1	ENSHGLG00000016312	ENSHGLG00000017220	ENSHGLG00000010206	FBXL14 (ENSHGLG00000018846)	WNT5B (ENSHGLG00000018867)	ADIPOR2 (ENSHGLG00000018584)	CACNA2D4 (ENSHGLG00000009530)	LRTM2 (ENSHGLG00000015685)	DCP1B (ENSHGLG00000019233)	ENSHGLG00000015597	ENSHGLG00000037716	ENSHGLG00000020936	ENSHGLG00000016169	ENSHGLG00000010684	ADA2 (ENSHGLG00000046267)	ENSHGLG00000009564 #22	CECR2 (ENSHGLG00000007263)	ENSHGLG00000004087	SLC25A18 (ENSHGLG00000033243)	ATP6V1E1 (ENSHGLG00000012473)	ENSHGLG00000045187	ENSHGLG00000004800	BID (ENSHGLG00000018877)	MICAL3 (ENSHGLG00000016545)	PEX26 (ENSHGLG00000016019)	TUBA8 (ENSHGLG00000015926)	ENSHGLG00000016303	ENSHGLG00000034178	ENSHGLG00000017583	ENSHGLG00000006817	ENSHGLG00000043872
Rodentia_B	ANCESTRAL SPECIES		ENSGT00530000063624.C	ENSGT00940000159209 #7	ENSGT00940000155689 #8	ENSGT00940000159332 #9	ENSGT00390000015205	ENSGT00940000162278 #11	ENSGT00940000158387 #13	ENSGT00940000161290	ENSGT00390000002053 #15	ENSGT00390000001528 #16	ENSGT00950000183034.B #17	ENSGT00940000156790 #18	ENSGT00390000017955.c #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214 #22	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000155272 #24	ENSGT00390000009130.a.b #23	ENSGT00940000164770	ENSGT00980000198642	ENSGT00940000155824.C #34	ENSGT00730000111729 #33	ENSGT00390000002919 #35	ENSGT00940000158787 #36	ENSGT00940000159442 #37	ENSGT00390000017974
Myomorpha	ANCESTRAL SPECIES	3	ENSGT00530000063624.C	ENSGT00940000159209 #7	ENSGT00940000155689 #8	ENSGT00940000159332 #9	ENSGT00390000015205	ENSGT00940000162278 #11	ENSGT00940000158387 #13	ENSGT00940000161290	ENSGT00390000002053 #15	ENSGT00390000001528 #16	ENSGT00950000183034.B #17	ENSGT00940000156790 #18	ENSGT00390000017955.c #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214 #22	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000155272 #24	ENSGT00390000009130.a.b #23	ENSGT00940000164770	ENSGT00980000198642	ENSGT00940000155824.C #34	ENSGT00730000111729 #33	ENSGT00390000002919 #35	ENSGT00940000158787 #36	ENSGT00940000159442 #37	ENSGT00390000017974
Muroidea	ANCESTRAL SPECIES	3	ENSGT00530000063624.C	ENSGT00940000159209 #7	ENSGT00940000155689 #8	ENSGT00940000159332 #9	ENSGT00390000015205	ENSGT00940000162278 #11	ENSGT00940000158387 #13	ENSGT00940000161290	ENSGT00390000002053 #15	ENSGT00390000001528 #16	ENSGT00950000183034.B #17	ENSGT00940000156790 #18	ENSGT00390000017955.c #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214 #22	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000155272 #24	ENSGT00390000009130.a.b #23	ENSGT00940000164770	ENSGT00980000198642	ENSGT00940000155824.C #34	ENSGT00730000111729 #33	ENSGT00390000002919 #35	ENSGT00940000158787 #36	ENSGT00940000159442 #37	ENSGT00390000017974
Muroidea_A	ANCESTRAL SPECIES	3	ENSGT00530000063624.C	ENSGT00940000159209 #7	ENSGT00940000155689 #8	ENSGT00940000159332 #9	ENSGT00390000015205	ENSGT00940000162278 #11	ENSGT00940000158387 #13	ENSGT00940000161290	ENSGT00390000002053 #15	ENSGT00390000001528 #16	ENSGT00950000183034.B #17	ENSGT00940000156790 #18	ENSGT00390000017955.c #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214 #22	ENSGT00940000164770.b	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000155272 #24	ENSGT00390000009130.a.b #23	ENSGT00940000164770.a	ENSGT00940000155824.C #34	ENSGT00730000111729 #33	ENSGT00390000002919 #35	ENSGT00940000158787 #36	ENSGT00940000159442 #37	ENSGT00520000061577
Cricetidae	ANCESTRAL SPECIES	2	ENSGT00530000063624.C	ENSGT00940000159209 #7	ENSGT00940000155689 #8	ENSGT00940000159332 #9	ENSGT00390000015205	ENSGT00940000162278 #11	ENSGT00940000158387 #13	ENSGT00940000161290	ENSGT00390000002053 #15	ENSGT00390000001528 #16	ENSGT00950000183034.B #17	ENSGT00940000156790 #18	ENSGT00390000017955.c #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214 #22	ENSGT00940000164770.b	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000155272 #24	ENSGT00390000009130.a.b #23	ENSGT00980000198642	ENSGT00940000155824.C #34	ENSGT00730000111729 #33	ENSGT00390000002919 #35	ENSGT00940000158787 #36	ENSGT00940000159442.h #37	ENSGT00520000061577
Cricetinae	ANCESTRAL SPECIES	5	ENSGT00530000063624.C	ENSGT00940000159209 #7	ENSGT00940000155689 #8	ENSGT00940000159332 #9	ENSGT00390000015205	ENSGT00940000162278 #11	ENSGT00940000158387 #13	ENSGT00940000161290	ENSGT00390000002053 #15	ENSGT00390000001528 #16	ENSGT00950000183034.B #17	ENSGT00940000156790 #18	ENSGT00390000017955.c #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214 #22	ENSGT00940000164770.b	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000155272 #24	ENSGT00940000155824.C #34	ENSGT00390000002919 #35	ENSGT00940000158787 #36	ENSGT00940000159442.h #37	ENSGT00390000017974.t	ENSGT00860000135887	ENSGT00950000183031.A.a.a	ENSGT00940000163458
Golden Hamster	MODERN SPECIES	783												Ppt1 (ENSMAUG00000005418) #18	Cap1 (ENSMAUG00000014946) #19	Mfsd2a (ENSMAUG00000008783) #20	Mycl (ENSMAUG00000019673) #21	Trit1 (ENSMAUG00000000399) #22	Ppie (ENSMAUG00000020323) #25	Hpcal4 (ENSMAUG00000019694) #26	Heyl (ENSMAUG00000021921) #28	ENSMAUG00000019763 #29	ENSMAUG00000016732 #24	Macf1 (ENSMAUG00000019511) #34	Ndufs5 (ENSMAUG00000017342) #35	Akirin1 (ENSMAUG00000021503) #36	Rhbdl2 (ENSMAUG00000015665) #37	Mycbp (ENSMAUG00000013797)	Rragc (ENSMAUG00000012656)	ENSMAUG00000005081	Pou3f1 (ENSMAUG00000014508)	Utp11 (ENSMAUG00000008360)	Fhl3 (ENSMAUG00000013735)
Chinese hamster chok1gshd	MODERN SPECIES	111	Rims3 (ENSCGRG00001020274) #9	Exo5 (ENSCGRG00001006191)	Zfp69 (ENSCGRG00001020565) #11	Smap2 (ENSCGRG00001019982) #13	Col9a2 (ENSCGRG00001015354)	Zmpste24 (ENSCGRG00001013492) #15	Tmco2 (ENSCGRG00001013255) #16	Rlf (ENSCGRG00001007124) #17	ENSCGRG00001001757	ENSCGRG00001019636	ENSCGRG00001019698	Ppt1 (ENSCGRG00001017317) #18	Cap1 (ENSCGRG00001014999) #19	Mfsd2a (ENSCGRG00001012559) #20	Mycl (ENSCGRG00001012143) #21	Trit1 (ENSCGRG00001001894) #22	Bmp8b (ENSCGRG00001024934)	Ppie (ENSCGRG00001018491) #25	Hpcal4 (ENSCGRG00001017506) #26	Nt5c1a (ENSCGRG00001015879) #27	Heyl (ENSCGRG00001014507) #28	Pabpc4 (ENSCGRG00001018166) #29	ENSCGRG00001024169 #24	Macf1 (ENSCGRG00001022689) #34	Ndufs5 (ENSCGRG00001010913) #35	Akirin1 (ENSCGRG00001019740) #36	Rhbdl2 (ENSCGRG00001019222) #37	ENSCGRG00001000948	ENSCGRG00001001548 #37	Mycbp (ENSCGRG00001014579)	ENSCGRG00001004752
Cricetidae_B	ANCESTRAL SPECIES	2	ENSGT00530000063624.C	ENSGT00940000159209 #7	ENSGT00940000155689 #8	ENSGT00940000159332 #9	ENSGT00390000015205	ENSGT00940000162278 #11	ENSGT00940000158387 #13	ENSGT00940000161290	ENSGT00390000002053 #15	ENSGT00390000001528 #16	ENSGT00950000183034.B #17	ENSGT00940000156790 #18	ENSGT00390000017955.c #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214 #22	ENSGT00940000155272 #24	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00390000009130.a.b #23	ENSGT00940000155824.C #34	ENSGT00730000111729 #33	ENSGT00390000002919 #35	ENSGT00940000158787 #36	ENSGT00940000159442.h #37	ENSGT00390000017974.s.b	ENSGT00950000183031.A.a.a	ENSGT00940000163458
Prairie vole	MODERN SPECIES	1	Kcnq4 (ENSMOCG00000010712) #7	Nfyc (ENSMOCG00000018240) #8	ENSMOCG00000010327	Rims3 (ENSMOCG00000002716) #9	Exo5 (ENSMOCG00000009071)	Zfp69 (ENSMOCG00000001233) #11	Smap2 (ENSMOCG00000003493) #13	Col9a2 (ENSMOCG00000016172)	Zmpste24 (ENSMOCG00000001622) #15	Tmco2 (ENSMOCG00000008800) #16	Rlf (ENSMOCG00000021851) #17	Ppt1 (ENSMOCG00000015437) #18	ENSMOCG00000005738 #19	Mfsd2a (ENSMOCG00000020481) #20	Mycl (ENSMOCG00000021799) #21	Trit1 (ENSMOCG00000008173) #22	Bmp8b (ENSMOCG00000022145)	ENSMOCG00000018443 #25	Hpcal4 (ENSMOCG00000017738) #26	Nt5c1a (ENSMOCG00000014202) #27	Heyl (ENSMOCG00000000498) #28	Pabpc4 (ENSMOCG00000006763) #29	ENSMOCG00000006289 #24	ENSMOCG00000001459	ENSMOCG00000013336 #34	ENSMOCG00000016501 #34	Ndufs5 (ENSMOCG00000012730) #35	Akirin1 (ENSMOCG00000003567) #36	Rhbdl2 (ENSMOCG00000002795) #37	Mycbp (ENSMOCG00000015574)	Rragc (ENSMOCG00000014353)
Northern American deer mouse	MODERN SPECIES	11	Nfyc (ENSPEMG00000008178) #8	Rims3 (ENSPEMG00000029843) #9	Exo5 (ENSPEMG00000024028)	Zfp69 (ENSPEMG00000004280) #11	Smap2 (ENSPEMG00000022978) #13	Col9a2 (ENSPEMG00000018729)	Zmpste24 (ENSPEMG00000017887) #15	Tmco2 (ENSPEMG00000018032) #16	Rlf (ENSPEMG00000027824) #17	ENSPEMG00000009772	ENSPEMG00000030310	Ppt1 (ENSPEMG00000008449) #18	Cap1 (ENSPEMG00000021949) #19	Mfsd2a (ENSPEMG00000022479) #20	Mycl (ENSPEMG00000029362) #21	Trit1 (ENSPEMG00000022418) #22	ENSPEMG00000024171 #24	Ppie (ENSPEMG00000013681) #25	Hpcal4 (ENSPEMG00000031286) #26	Nt5c1a (ENSPEMG00000021341) #27	Heyl (ENSPEMG00000028938) #28	ENSPEMG00000023569 #29	ENSPEMG00000022339 #24	ENSPEMG00000026409 #23	Macf1 (ENSPEMG00000012737) #34	ENSPEMG00000025195 #33	Ndufs5 (ENSPEMG00000008080) #35	Akirin1 (ENSPEMG00000030900) #36	ENSPEMG00000031249	Mycbp (ENSPEMG00000024417)	Rragc (ENSPEMG00000004170)
Murinae	ANCESTRAL SPECIES	2	ENSGT00530000063624.C	ENSGT00940000159209 #7	ENSGT00940000155689 #8	ENSGT00940000159332 #9	ENSGT00390000015205	ENSGT00940000162278 #11	ENSGT00940000158387 #13	ENSGT00940000161290	ENSGT00390000002053 #15	ENSGT00390000001528 #16	ENSGT00950000183034.B #17	ENSGT00940000156790 #18	ENSGT00390000017955.c #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214 #22	ENSGT00940000164770.b	ENSGT00390000009130.a.b #23	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000155272 #24	ENSGT00940000155824.C #34	ENSGT00390000002919 #35	ENSGT00940000158787 #36	ENSGT00940000159442 #37	ENSGT00520000061577	ENSGT00390000017974	ENSGT00860000135887
Mus	ANCESTRAL SPECIES	3	ENSGT00940000155689 #8	ENSGT00940000159332 #9	ENSGT00390000015205	ENSGT00940000162278 #11	ENSGT00940000158387 #13	ENSGT00940000161290	ENSGT00390000002053 #15	ENSGT00390000001528 #16	ENSGT00950000183034.B #17	ENSGT00390000000102.b	ENSGT00390000000102.a	ENSGT00940000156790 #18	ENSGT00390000017955.c #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214 #22	ENSGT00940000164770.b	ENSGT00390000009130.a.b #23	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000155272 #24	ENSGT00940000155824.C #34	ENSGT00390000002919 #35	ENSGT00940000158787 #36	ENSGT00940000159442 #37	ENSGT00520000061577.a	ENSGT00390000017974	ENSGT00860000135887
Mus_A	ANCESTRAL SPECIES	3	ENSGT00530000063624.C	ENSGT00940000159209 #7	ENSGT00940000155689 #8	ENSGT00940000159332 #9	ENSGT00390000015205	ENSGT00940000162278 #11	ENSGT00940000158387 #13	ENSGT00940000161290	ENSGT00390000002053 #15	ENSGT00390000001528 #16	ENSGT00950000183034.B #17	ENSGT00940000156790 #18	ENSGT00390000017955.c #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214 #22	ENSGT00940000164770.b	ENSGT00390000009130.a.b #23	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788.s #29	ENSGT00940000155272 #24	ENSGT00940000155824.C #34	ENSGT00390000002919 #35	ENSGT00940000158787 #36	ENSGT00940000159442 #37	ENSGT00520000061577.a	ENSGT00390000017974	ENSGT00860000135887
Mus_B	ANCESTRAL SPECIES	5	ENSGT00940000159332 #9	ENSGT00390000015205	ENSGT00940000162278 #11	ENSGT00940000158387 #13	ENSGT00940000161290	ENSGT00390000002053 #15	ENSGT00390000001528 #16	ENSGT00950000183034.B #17	ENSGT00390000000102.b.b.b	ENSGT00390000000102.b.b.a	ENSGT00390000000102.a	ENSGT00940000156790 #18	ENSGT00390000017955.c #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214 #22	ENSGT00940000164770.b	ENSGT00390000009130.a.b #23	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788.s #29	ENSGT00940000155272 #24	ENSGT00940000155824.C #34	ENSGT00390000002919 #35	ENSGT00940000158787 #36	ENSGT00940000159442 #37	ENSGT00520000061577.a	ENSGT00390000017974	ENSGT00860000135887
Mus_C	ANCESTRAL SPECIES	2	ENSGT00940000159332 #9	ENSGT00390000015205	ENSGT00940000162278 #11	ENSGT00940000158387 #13	ENSGT00940000161290	ENSGT00390000002053 #15	ENSGT00390000001528 #16	ENSGT00950000183034.B #17	ENSGT00390000000102.b.a	ENSGT00390000000102.b.b.a	ENSGT00390000000102.a	ENSGT00940000156790 #18	ENSGT00390000017955.c #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214 #22	ENSGT00940000164770.b	ENSGT00390000009130.a.b #23	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788.s #29	ENSGT00940000155272 #24	ENSGT00940000155824.C #34	ENSGT00390000002919 #35	ENSGT00940000158787 #36	ENSGT00940000159442 #37	ENSGT00520000061577.a	ENSGT00390000017974	ENSGT00860000135887
Steppe mouse	MODERN SPECIES	3362										ENSMSIG00000012831	Ppt1 (ENSMSIG00000012843) #18	Cap1 (ENSMSIG00000012888) #19	ENSMSIG00000012905	Mfsd2a (ENSMSIG00000012913) #20	Mycl (ENSMSIG00000012978) #21	Trit1 (ENSMSIG00000013008) #22	Bmp8b (ENSMSIG00000013040)	Ppie (ENSMSIG00000013106) #25	Hpcal4 (ENSMSIG00000013133) #26	Nt5c1a (ENSMSIG00000013149) #27	Heyl (ENSMSIG00000013161) #28	Pabpc4 (ENSMSIG00000013185) #29	ENSMSIG00000013542 #24	Macf1 (ENSMSIG00000013599) #34	ENSMSIG00000014771	ENSMSIG00000014777 #35	Akirin1 (ENSMSIG00000014798) #36	Rhbdl2 (ENSMSIG00000014815) #37	ENSMSIG00000014855	ENSMSIG00000014863	Mycbp (ENSMSIG00000014871)
spretus	MODERN SPECIES	13	Rims3 (MGP_SPRETEiJ_G0027393) #9	Exo5 (MGP_SPRETEiJ_G0027394)	Zfp69 (MGP_SPRETEiJ_G0027395) #11	Smap2 (MGP_SPRETEiJ_G0027396) #13	Col9a2 (MGP_SPRETEiJ_G0027397)	Zmpste24 (MGP_SPRETEiJ_G0027398) #15	Tmco2 (MGP_SPRETEiJ_G0027399) #16	Rlf (MGP_SPRETEiJ_G0027400) #17	MGP_SPRETEiJ_G0027401	MGP_SPRETEiJ_G0027402	MGP_SPRETEiJ_G0027403	Ppt1 (MGP_SPRETEiJ_G0027404) #18	Cap1 (MGP_SPRETEiJ_G0027405) #19	Mfsd2a (MGP_SPRETEiJ_G0027406) #20	MGP_SPRETEiJ_G0027407 #21	Trit1 (MGP_SPRETEiJ_G0027408) #22	Bmp8b (MGP_SPRETEiJ_G0027409)	MGP_SPRETEiJ_G0027410 #23	Ppie (MGP_SPRETEiJ_G0027411) #25	Hpcal4 (MGP_SPRETEiJ_G0027412) #26	Nt5c1a (MGP_SPRETEiJ_G0027413) #27	Heyl (MGP_SPRETEiJ_G0027414) #28	Pabpc4 (MGP_SPRETEiJ_G0027415) #29	MGP_SPRETEiJ_G0027416	Macf1 (MGP_SPRETEiJ_G0027417) #34	MGP_SPRETEiJ_G0027418 #35	Akirin1 (MGP_SPRETEiJ_G0027419) #36	Rhbdl2 (MGP_SPRETEiJ_G0027420) #37	MGP_SPRETEiJ_G0027421	Mycbp (MGP_SPRETEiJ_G0027422)	Rragc (MGP_SPRETEiJ_G0027423)
Mouse	MODERN SPECIES	13	Exo5 (ENSMUSG00000028629)	Zfp69 (ENSMUSG00000064141) #11	Smap2 (ENSMUSG00000032870) #13	Col9a2 (ENSMUSG00000028626)	Zmpste24 (ENSMUSG00000043207) #15	Tmco2 (ENSMUSG00000078577) #16	Rlf (ENSMUSG00000049878) #17	Gm12888 (ENSMUSG00000073764)	Gm12886 (ENSMUSG00000078576)	Gm12887 (ENSMUSG00000078575)	9530002B09Rik (ENSMUSG00000023263)	Ppt1 (ENSMUSG00000028657) #18	Cap1 (ENSMUSG00000028656) #19	Mfsd2a (ENSMUSG00000028655) #20	Mycl (ENSMUSG00000028654) #21	Trit1 (ENSMUSG00000028653) #22	Bmp8b (ENSMUSG00000002384)	Oxct2b (ENSMUSG00000076438) #23	Ppie (ENSMUSG00000028651) #25	Hpcal4 (ENSMUSG00000046093) #26	Nt5c1a (ENSMUSG00000054958) #27	Heyl (ENSMUSG00000032744) #28	Pabpc4 (ENSMUSG00000011257) #29	Bmp8a (ENSMUSG00000032726)	Oxct2a (ENSMUSG00000076436) #23	Macf1 (ENSMUSG00000028649) #34	Ndufs5 (ENSMUSG00000028648) #35	Akirin1 (ENSMUSG00000023075) #36	Rhbdl2 (ENSMUSG00000043333) #37	Mycbp (ENSMUSG00000028647)	Rragc (ENSMUSG00000028646)
Ryukyu mouse	MODERN SPECIES	13	Cited4 (MGP_CAROLIEiJ_G0026413)	Kcnq4 (MGP_CAROLIEiJ_G0026414) #7	Nfyc (MGP_CAROLIEiJ_G0026415) #8	Rims3 (MGP_CAROLIEiJ_G0026416) #9	Exo5 (MGP_CAROLIEiJ_G0026417)	Zfp69 (MGP_CAROLIEiJ_G0026418) #11	Smap2 (MGP_CAROLIEiJ_G0026419) #13	Col9a2 (MGP_CAROLIEiJ_G0026420)	Zmpste24 (MGP_CAROLIEiJ_G0026421) #15	Tmco2 (MGP_CAROLIEiJ_G0026422) #16	Rlf (MGP_CAROLIEiJ_G0026423) #17	Ppt1 (MGP_CAROLIEiJ_G0026424) #18	Cap1 (MGP_CAROLIEiJ_G0026425) #19	Mfsd2a (MGP_CAROLIEiJ_G0026426) #20	Mycl (MGP_CAROLIEiJ_G0026427) #21	Trit1 (MGP_CAROLIEiJ_G0026428) #22	Bmp8b (MGP_CAROLIEiJ_G0026429)	MGP_CAROLIEiJ_G0026430 #23	Ppie (MGP_CAROLIEiJ_G0026431) #25	Hpcal4 (MGP_CAROLIEiJ_G0026432) #26	Nt5c1a (MGP_CAROLIEiJ_G0026433) #27	Heyl (MGP_CAROLIEiJ_G0026434) #28	Pabpc4 (MGP_CAROLIEiJ_G0026435) #29	MGP_CAROLIEiJ_G0026436	Macf1 (MGP_CAROLIEiJ_G0026437) #34	Ndufs5 (MGP_CAROLIEiJ_G0026438) #35	Akirin1 (MGP_CAROLIEiJ_G0026439) #36	Rhbdl2 (MGP_CAROLIEiJ_G0026440) #37	MGP_CAROLIEiJ_G0026441	MGP_CAROLIEiJ_G0026442	Rragc (MGP_CAROLIEiJ_G0026443)
Shrew mouse	MODERN SPECIES	19	Kcnq4 (MGP_PahariEiJ_G0028743) #7	Nfyc (MGP_PahariEiJ_G0028744) #8	Rims3 (MGP_PahariEiJ_G0028745) #9	Exo5 (MGP_PahariEiJ_G0028746)	MGP_PahariEiJ_G0028747 #11	Smap2 (MGP_PahariEiJ_G0028748) #13	Col9a2 (MGP_PahariEiJ_G0028749)	Zmpste24 (MGP_PahariEiJ_G0028750) #15	Tmco2 (MGP_PahariEiJ_G0028751) #16	Rlf (MGP_PahariEiJ_G0028752) #17	MGP_PahariEiJ_G0028753	Ppt1 (MGP_PahariEiJ_G0028754) #18	Cap1 (MGP_PahariEiJ_G0028755) #19	Mfsd2a (MGP_PahariEiJ_G0028756) #20	Mycl (MGP_PahariEiJ_G0028757) #21	Trit1 (MGP_PahariEiJ_G0028758) #22	MGP_PahariEiJ_G0028759	MGP_PahariEiJ_G0028760 #23	Ppie (MGP_PahariEiJ_G0028761) #25	Hpcal4 (MGP_PahariEiJ_G0028762) #26	Nt5c1a (MGP_PahariEiJ_G0028763) #27	Heyl (MGP_PahariEiJ_G0028764) #28	Pabpc4 (MGP_PahariEiJ_G0028765) #29	Bmp8a (MGP_PahariEiJ_G0028766)	Macf1 (MGP_PahariEiJ_G0028767) #34	MGP_PahariEiJ_G0028768	Ndufs5 (MGP_PahariEiJ_G0028769) #35	Akirin1 (MGP_PahariEiJ_G0028770) #36	Rhbdl2 (MGP_PahariEiJ_G0028771) #37	MGP_PahariEiJ_G0028772	Mycbp (MGP_PahariEiJ_G0028773)
Rat	MODERN SPECIES	15	Rims3 (ENSRNOG00000011171) #9	Exo5 (ENSRNOG00000037432)	Zfp69 (ENSRNOG00000028662) #11	Smap2 (ENSRNOG00000011421) #13	LOC680700 (ENSRNOG00000011484)	Col9a2 (ENSRNOG00000011502)	Zmpste24 (ENSRNOG00000012054) #15	Tmco2 (ENSRNOG00000012340) #16	Rlf (ENSRNOG00000027921) #17	AC124205.2 (ENSRNOG00000059975)	Twf1-ps1 (ENSRNOG00000012595)	Ppt1 (ENSRNOG00000012616) #18	Cap1 (ENSRNOG00000013492) #19	Mfsd2a (ENSRNOG00000014008) #20	Mycl (ENSRNOG00000014259) #21	Trit1 (ENSRNOG00000014274) #22	Bmp8b (ENSRNOG00000033209)	Ppie (ENSRNOG00000014762) #25	Hpcal4 (ENSRNOG00000050983) #26	Nt5c1a (ENSRNOG00000068555) #27	Heyl (ENSRNOG00000015318) #28	Pabpc4 (ENSRNOG00000015642) #29	Oxct2a (ENSRNOG00000070053) #23	Bmp8a (ENSRNOG00000030155)	Macf1 (ENSRNOG00000016047) #34	Ndufs5 (ENSRNOG00000026646) #35	Akirin1 (ENSRNOG00000026610) #36	Rhbdl2 (ENSRNOG00000026592) #37	ENSRNOG00000069690	Mycbp (ENSRNOG00000065724)	Rragc (ENSRNOG00000017426)
Lesser Egyptian jerboa	DUPLICATION
Lesser Egyptian jerboa	MODERN SPECIES	79	Ccdc32 (ENSJJAG00000017032)	Rpusd2 (ENSJJAG00000023160)	ENSJJAG00000012632	ENSJJAG00000000354	Rad51 (ENSJJAG00000019338)	Rmdn3 (ENSJJAG00000020742)	Gchfr (ENSJJAG00000005040)	Dnajc17 (ENSJJAG00000011274)	Zfyve19 (ENSJJAG00000022792)	ENSJJAG00000011645	Spint1 (ENSJJAG00000014215)	Rhov (ENSJJAG00000005067)	Vps18 (ENSJJAG00000015321)	Dll4 (ENSJJAG00000019587)	Ino80 (ENSJJAG00000016166)	ENSJJAG00000000316 #22	ENSJJAG00000005674	ENSJJAG00000018584	ENSJJAG00000004045	Traf6 (ENSJJAG00000019637)	ENSJJAG00000024040	ENSJJAG00000009576	Pamr1 (ENSJJAG00000002115)	ENSJJAG00000012579	ENSJJAG00000017687	ENSJJAG00000024031	Pdhx (ENSJJAG00000007859)	ENSJJAG00000011063	Ehf (ENSJJAG00000023839)	Elf5 (ENSJJAG00000003357)	Cat (ENSJJAG00000012897)
Lesser Egyptian jerboa	MODERN SPECIES	117					ENSJJAG00000022543	Smap2 (ENSJJAG00000024140) #13	Col9a2 (ENSJJAG00000000950)	Zmpste24 (ENSJJAG00000023367) #15	Tmco2 (ENSJJAG00000006506) #16	Rlf (ENSJJAG00000013083) #17	ENSJJAG00000021094	Ppt1 (ENSJJAG00000016991) #18	Cap1 (ENSJJAG00000021395) #19	Mfsd2a (ENSJJAG00000015941) #20	Mycl (ENSJJAG00000011159) #21	ENSJJAG00000000300 #22	ENSJJAG00000023596	Tinagl1 (ENSJJAG00000019903)	Hcrtr1 (ENSJJAG00000024301)	Pef1 (ENSJJAG00000018921)	ENSJJAG00000019371	Adgrb2 (ENSJJAG00000017327)	ENSJJAG00000023812	ENSJJAG00000022891	Khdrbs1 (ENSJJAG00000016809)	Tmem39b (ENSJJAG00000010538)	Kpna6 (ENSJJAG00000015362)	Txlna (ENSJJAG00000007353)	Ccdc28b (ENSJJAG00000017928)	ENSJJAG00000013086	Dcdc2b (ENSJJAG00000022479)
Kangaroo rat	MODERN SPECIES	352	Cited4 (ENSDORG00000024161)	Kcnq4 (ENSDORG00000009865) #7	Nfyc (ENSDORG00000009863) #8	Rims3 (ENSDORG00000014652) #9	Exo5 (ENSDORG00000003571)	Zfp69 (ENSDORG00000024989) #11	Smap2 (ENSDORG00000016161) #13	Col9a2 (ENSDORG00000014027)	Zmpste24 (ENSDORG00000014026) #15	Tmco2 (ENSDORG00000024253) #16	Rlf (ENSDORG00000010416) #17	Ppt1 (ENSDORG00000027642) #18	ENSDORG00000003053 #19	Mfsd2a (ENSDORG00000012839) #20	Mycl (ENSDORG00000026501) #21	Trit1 (ENSDORG00000012449) #22	ENSDORG00000025089	Ppie (ENSDORG00000005175) #25	Hpcal4 (ENSDORG00000005161) #26	Nt5c1a (ENSDORG00000028589) #27	Heyl (ENSDORG00000024912) #28	Pabpc4 (ENSDORG00000011581) #29	ENSDORG00000016166 #24	ENSDORG00000023553	ENSDORG00000024495 #34	Ndufs5 (ENSDORG00000014651) #35	Akirin1 (ENSDORG00000025387) #36	Rhbdl2 (ENSDORG00000010234) #37	ENSDORG00000028436	Mycbp (ENSDORG00000010232)	ENSDORG00000024713
Primates	ANCESTRAL SPECIES	4	ENSGT00940000155689 #8	ENSGT00940000159332 #9	ENSGT00940000163099 #10	ENSGT00390000015205	ENSGT00940000162278 #11	ENSGT00940000163434 #12	ENSGT00940000158387 #13	ENSGT00940000161290	ENSGT00390000002053 #15	ENSGT00390000001528 #16	ENSGT00950000183034.B #17	ENSGT00940000156790 #18	ENSGT00390000017955.c #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214 #22	ENSGT00390000009130.a.b #23	ENSGT00940000155272 #24	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000155824.C #34	ENSGT00730000111729 #33	ENSGT00390000002919 #35	ENSGT00940000158787.nb #36	ENSGT00940000159442 #37	ENSGT01090000260070.C	ENSGT00390000017974	ENSGT00950000183031.A.a.a
Haplorrhini	ANCESTRAL SPECIES	1	ENSGT00940000155689 #8	ENSGT00940000159332 #9	ENSGT00940000163099 #10	ENSGT00390000015205	ENSGT00940000162278 #11	ENSGT00940000163434 #12	ENSGT00940000158387 #13	ENSGT00940000161290	ENSGT00390000002053 #15	ENSGT00390000001528 #16	ENSGT00950000183034.B #17	ENSGT00940000156790 #18	ENSGT00390000017955.c #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214 #22	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000155272 #24	ENSGT00390000009130.a.b #23	ENSGT00730000111729 #33	ENSGT00940000155824.C #34	ENSGT00940000165766	ENSGT00390000002919 #35	ENSGT00940000158787.nb #36	ENSGT00940000159442 #37	ENSGT01090000260070.C	ENSGT00390000017974
Simiiformes	ANCESTRAL SPECIES	3	ENSGT00940000155689 #8	ENSGT00940000159332 #9	ENSGT00940000163099 #10	ENSGT00390000015205	ENSGT00940000162278 #11	ENSGT00940000163434 #12	ENSGT00940000158387 #13	ENSGT00940000161290	ENSGT00390000002053 #15	ENSGT00390000001528 #16	ENSGT00950000183034.B #17	ENSGT00940000156790 #18	ENSGT00390000017955.c #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214 #22	ENSGT00390000009130.a.b #23	ENSGT00940000155272 #24	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000155824.C #34	ENSGT00730000111729 #33	ENSGT00390000002919 #35	ENSGT00940000158787.nb #36	ENSGT00940000159442 #37	ENSGT01090000260070.C	ENSGT00390000017974	ENSGT00950000183031.A.a.a
Catarrhini	ANCESTRAL SPECIES	3	ENSGT00940000155689.c #8	ENSGT00940000159332 #9	ENSGT00940000163099 #10	ENSGT00390000015205	ENSGT00940000162278 #11	ENSGT00940000163434 #12	ENSGT00940000158387 #13	ENSGT00940000161290	ENSGT00390000002053 #15	ENSGT00390000001528 #16	ENSGT00950000183034.B #17	ENSGT00940000156790 #18	ENSGT00390000017955.c.s #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214 #22	ENSGT00390000009130.a.b #23	ENSGT00940000155272 #24	ENSGT00940000158790 #25	ENSGT00390000004380.m.a.a.b	ENSGT00940000161166 #26	ENSGT00910000147126	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00860000135787	ENSGT00940000155824.C #34	ENSGT00730000111729 #33	ENSGT00390000002919 #35	ENSGT00940000158787.nb #36	ENSGT00940000159442 #37
Hominoidea	ANCESTRAL SPECIES	3	ENSGT00940000155689.c #8	ENSGT00940000159332 #9	ENSGT00940000163099 #10	ENSGT00390000015205	ENSGT00940000162278 #11	ENSGT00940000163434 #12	ENSGT00940000158387 #13	ENSGT00940000161290	ENSGT00390000002053 #15	ENSGT00390000001528 #16	ENSGT00950000183034.B #17	ENSGT00940000156790 #18	ENSGT00390000017955.c.s.a #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214 #22	ENSGT00940000158790 #25	ENSGT00390000004380.m.a.a.b	ENSGT00940000161166 #26	ENSGT00910000147126	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00860000135787	ENSGT00390000009130.a.b #23	ENSGT00940000155272 #24	ENSGT00940000155824.C #34	ENSGT00730000111729 #33	ENSGT00390000002919 #35	ENSGT00940000158787.nb #36	ENSGT00940000159442 #37
Hominidae	ANCESTRAL SPECIES	3	ENSGT00940000155689.c #8	ENSGT00940000159332 #9	ENSGT00940000163099 #10	ENSGT00390000015205	ENSGT00940000162278 #11	ENSGT00940000163434 #12	ENSGT00940000158387 #13	ENSGT00940000161290	ENSGT00390000002053 #15	ENSGT00390000001528 #16	ENSGT00950000183034.B #17	ENSGT00940000156790 #18	ENSGT00390000017955.c.s.a #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214 #22	ENSGT00940000158790 #25	ENSGT00390000004380.m.a.a.b	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00860000135787	ENSGT00390000009130.a.b #23	ENSGT00940000155272 #24	ENSGT00940000155824.C #34	ENSGT00730000111729 #33	ENSGT00390000002919 #35	ENSGT00940000158787.nb #36	ENSGT00940000159442 #37	ENSGT01090000260070.C
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	3	ENSGT00940000159332 #9	ENSGT00940000163099 #10	ENSGT00390000015205	ENSGT00940000162278 #11	ENSGT00940000163434 #12	ENSGT00940000158387 #13	ENSGT00940000161290	ENSGT00390000002053 #15	ENSGT00390000001528 #16	ENSGT00950000183034.B #17	ENSGT00940000156790 #18	ENSGT00390000017955.c.s.a #19	ENSGT00940000153095.g.b.a.a.a.b.b.a.a.b.b.a	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214 #22	ENSGT00940000155272.ec.a #24	ENSGT00940000158790 #25	ENSGT00390000004380.m.a.a.b	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00860000135787	ENSGT00940000155272.dc #24	ENSGT00390000009130.a.b #23	ENSGT00940000155272.ec.b #24	ENSGT00940000155824.C #34	ENSGT00730000111729 #33	ENSGT00390000002919 #35	ENSGT00940000158787.nb.a #36
Homo/Pan group	ANCESTRAL SPECIES	4	ENSGT00940000159332 #9	ENSGT00940000163099 #10	ENSGT00390000015205	ENSGT00940000162278 #11	ENSGT00940000163434 #12	ENSGT00940000158387 #13	ENSGT00940000161290	ENSGT00390000002053 #15	ENSGT00390000001528 #16	ENSGT00950000183034.B #17	ENSGT00940000156790 #18	ENSGT00390000017955.c.s.a #19	ENSGT00940000153095.g.b.a.a.a.b.b.a.a.b.b.a	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214 #22	ENSGT00390000009130.a.b #23	ENSGT00940000155272.ec.a #24	ENSGT00940000158790 #25	ENSGT00390000004380.m.a.a.b	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000155272.ec.b #24	ENSGT00860000135787	ENSGT00940000155272.dc #24	ENSGT00940000155824.C #34	ENSGT00730000111729 #33	ENSGT00390000002919 #35	ENSGT00940000158787.nb.a #36
Pan	ANCESTRAL SPECIES		ENSGT00940000159332 #9	ENSGT00940000163099 #10	ENSGT00390000015205	ENSGT00940000162278 #11	ENSGT00940000163434 #12	ENSGT00940000158387 #13	ENSGT00940000161290	ENSGT00390000002053 #15	ENSGT00390000001528 #16	ENSGT00950000183034.B #17	ENSGT00940000156790 #18	ENSGT00390000017955.c.s.a #19	ENSGT00940000153095.g.b.a.a.a.b.b.a.a.b.b.a	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214 #22	ENSGT00940000155272.ec.a #24	ENSGT00940000158790 #25	ENSGT00390000004380.m.a.a.b	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00860000135787	ENSGT00940000155272.dc #24	ENSGT00390000009130.a.b #23	ENSGT00940000155272.ec.b #24	ENSGT00940000155824.C #34	ENSGT00730000111729 #33	ENSGT00390000002919 #35	ENSGT00940000158787.nb.a #36
Bonobo	MODERN SPECIES		KCNQ4 (ENSPPAG00000041138) #7	ENSPPAG00000032067 #8	RIMS3 (ENSPPAG00000040113) #9	ZNF684 (ENSPPAG00000030066) #10	ZFP69 (ENSPPAG00000028849) #11	ZFP69B (ENSPPAG00000040903) #12	SMAP2 (ENSPPAG00000033555) #13	COL9A2 (ENSPPAG00000042613)	ZMPSTE24 (ENSPPAG00000034912) #15	TMCO2 (ENSPPAG00000028744) #16	RLF (ENSPPAG00000032318) #17	PPT1 (ENSPPAG00000040559) #18	CAP1 (ENSPPAG00000033903) #19	MFSD2A (ENSPPAG00000037970) #20	MYCL (ENSPPAG00000029651) #21	TRIT1 (ENSPPAG00000023930) #22	ENSPPAG00000008285 #23	PPIE (ENSPPAG00000042403) #25	ENSPPAG00000018066	HPCAL4 (ENSPPAG00000030421) #26	NT5C1A (ENSPPAG00000042148) #27	HEYL (ENSPPAG00000029785) #28	PABPC4 (ENSPPAG00000043625) #29	ENSPPAG00000017922	ENSPPAG00000039451 #23	ENSPPAG00000030685 #24	ENSPPAG00000037863 #33	MACF1 (ENSPPAG00000032133) #34	NDUFS5 (ENSPPAG00000030074) #35	AKIRIN1 (ENSPPAG00000033039) #36	RHBDL2 (ENSPPAG00000041735) #37
Chimpanzee	MODERN SPECIES		RIMS3 (ENSPTRG00000000594) #9	ZNF684 (ENSPTRG00000000593) #10	EXO5 (ENSPTRG00000000592)	ZFP69 (ENSPTRG00000000591) #11	ZFP69B (ENSPTRG00000000590) #12	SMAP2 (ENSPTRG00000000589) #13	COL9A2 (ENSPTRG00000044977)	ZMPSTE24 (ENSPTRG00000000587) #15	TMCO2 (ENSPTRG00000000586) #16	RLF (ENSPTRG00000000585) #17	PPT1 (ENSPTRG00000000584) #18	CAP1 (ENSPTRG00000000583) #19	ENSPTRG00000046517	MFSD2A (ENSPTRG00000000581) #20	MYCL (ENSPTRG00000000580) #21	TRIT1 (ENSPTRG00000000579) #22	BMP8B (ENSPTRG00000000578) #24	PPIE (ENSPTRG00000000577) #25	ENSPTRG00000044983	HPCAL4 (ENSPTRG00000000576) #26	NT5C1A (ENSPTRG00000000575) #27	HEYL (ENSPTRG00000047504) #28	PABPC4 (ENSPTRG00000000573) #29	ENSPTRG00000049535	ENSPTRG00000000572 #24	MACF1 (ENSPTRG00000043118) #34	NDUFS5 (ENSPTRG00000000568) #35	ENSPTRG00000052337 #36	RHBDL2 (ENSPTRG00000000566) #37	GJA9 (ENSPTRG00000034043)	MYCBP (ENSPTRG00000052820)
Human	MODERN SPECIES		NFYC (ENSG00000066136) #8	RIMS3 (ENSG00000117016) #9	ZNF684 (ENSG00000117010) #10	EXO5 (ENSG00000164002)	ZFP69 (ENSG00000187815) #11	ZFP69B (ENSG00000187801) #12	SMAP2 (ENSG00000084070) #13	COL9A2 (ENSG00000049089)	ZMPSTE24 (ENSG00000084073) #15	TMCO2 (ENSG00000188800) #16	RLF (ENSG00000117000) #17	PPT1 (ENSG00000131238) #18	CAP1 (ENSG00000131236) #19	MFSD2A (ENSG00000168389) #20	MYCL (ENSG00000116990) #21	TRIT1 (ENSG00000043514) #22	OXCT2 (ENSG00000198754) #23	BMP8B (ENSG00000116985) #24	PPIE (ENSG00000084072) #25	HPCAL4 (ENSG00000116983) #26	NT5C1A (ENSG00000116981) #27	HEYL (ENSG00000163909) #28	PABPC4 (ENSG00000090621) #29	BMP8A (ENSG00000183682) #24	MACF1 (ENSG00000127603) #34	NDUFS5 (ENSG00000168653) #35	AKIRIN1 (ENSG00000174574) #36	RHBDL2 (ENSG00000158315) #37	GJA9 (ENSG00000131233)	ENSG00000274944	MYCBP (ENSG00000214114)
Gorilla	MODERN SPECIES		RIMS3 (ENSGGOG00000009986) #9	ZNF684 (ENSGGOG00000022914) #10	EXO5 (ENSGGOG00000024174)	ZFP69 (ENSGGOG00000006972) #11	ZFP69B (ENSGGOG00000039613) #12	SMAP2 (ENSGGOG00000004018) #13	COL9A2 (ENSGGOG00000002596)	ZMPSTE24 (ENSGGOG00000002591) #15	TMCO2 (ENSGGOG00000015048) #16	RLF (ENSGGOG00000015221) #17	PPT1 (ENSGGOG00000025819) #18	CAP1 (ENSGGOG00000027527) #19	ENSGGOG00000023672	MFSD2A (ENSGGOG00000015275) #20	MYCL (ENSGGOG00000001693) #21	TRIT1 (ENSGGOG00000010070) #22	BMP8A (ENSGGOG00000015791) #24	PPIE (ENSGGOG00000015783) #25	ENSGGOG00000039917	NT5C1A (ENSGGOG00000008274) #27	HEYL (ENSGGOG00000008268) #28	PABPC4 (ENSGGOG00000004002) #29	ENSGGOG00000039231	ENSGGOG00000039286 #33	MACF1 (ENSGGOG00000022652) #34	AKIRIN1 (ENSGGOG00000006053) #36	RHBDL2 (ENSGGOG00000009504) #37	GJA9 (ENSGGOG00000005807)	MYCBP (ENSGGOG00000005810)	RRAGC (ENSGGOG00000013382)	ENSGGOG00000027537
Orangutan	MODERN SPECIES		RIMS3 (ENSPPYG00000001485) #9	ZNF684 (ENSPPYG00000001486) #10	EXO5 (ENSPPYG00000001487)	ENSPPYG00000035572	ZFP69 (ENSPPYG00000001488) #11	ZFP69B (ENSPPYG00000001489) #12	SMAP2 (ENSPPYG00000001490) #13	COL9A2 (ENSPPYG00000001491)	ZMPSTE24 (ENSPPYG00000001492) #15	TMCO2 (ENSPPYG00000001493) #16	RLF (ENSPPYG00000001494) #17	PPT1 (ENSPPYG00000030814) #18	CAP1 (ENSPPYG00000001496) #19	ENSPPYG00000001497 #20	MYCL (ENSPPYG00000032517) #21	TRIT1 (ENSPPYG00000001499) #22	ENSPPYG00000001500 #24	PPIE (ENSPPYG00000001501) #25	HPCAL4 (ENSPPYG00000001503) #26	NT5C1A (ENSPPYG00000001504) #27	HEYL (ENSPPYG00000001505) #28	PABPC4 (ENSPPYG00000001506) #29	ENSPPYG00000037293 #25	ENSPPYG00000033182	ENSPPYG00000001507 #24	MACF1 (ENSPPYG00000001509) #34	NDUFS5 (ENSPPYG00000001511) #36	RHBDL2 (ENSPPYG00000001512) #37	GJA9 (ENSPPYG00000001514)	MYCBP (ENSPPYG00000001515)	RRAGC (ENSPPYG00000001516)
Gibbon	MODERN SPECIES	2	RIMS3 (ENSNLEG00000012190) #9	ZNF684 (ENSNLEG00000012187) #10	EXO5 (ENSNLEG00000028361)	ZFP69 (ENSNLEG00000012184) #11	ZFP69B (ENSNLEG00000034783) #12	SMAP2 (ENSNLEG00000032450) #13	COL9A2 (ENSNLEG00000012137)	ZMPSTE24 (ENSNLEG00000012132) #15	TMCO2 (ENSNLEG00000012130) #16	RLF (ENSNLEG00000012124) #17	PPT1 (ENSNLEG00000012121) #18	CAP1 (ENSNLEG00000012077) #19	ENSNLEG00000012076	ENSNLEG00000012066 #20	MYCL (ENSNLEG00000012063) #21	TRIT1 (ENSNLEG00000012038) #22	OXCT2 (ENSNLEG00000012037) #23	ENSNLEG00000012019 #24	PPIE (ENSNLEG00000011979) #25	ENSNLEG00000028202 #26	ENSNLEG00000028855	NT5C1A (ENSNLEG00000011971) #27	HEYL (ENSNLEG00000011965) #28	PABPC4 (ENSNLEG00000011928) #29	MACF1 (ENSNLEG00000011857) #34	ENSNLEG00000034249	AKIRIN1 (ENSNLEG00000035139) #36	ENSNLEG00000011848	RHBDL2 (ENSNLEG00000011836) #37	GJA9 (ENSNLEG00000011831)	ENSNLEG00000035297
Cercopithecidae	ANCESTRAL SPECIES	2	ENSGT00940000159332 #9	ENSGT00550000074801.h.c.b.a.a	ENSGT00940000163099 #10	ENSGT00390000015205	ENSGT00940000162278 #11	ENSGT00940000163434 #12	ENSGT00940000158387 #13	ENSGT00940000161290	ENSGT00390000002053 #15	ENSGT00390000001528 #16	ENSGT00950000183034.B #17	ENSGT00940000156790 #18	ENSGT00390000017955.c.s #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214 #22	ENSGT00940000155272.`c.a #24	ENSGT00390000009130.a.b #23	ENSGT00940000158790 #25	ENSGT00390000004380.m.a.a.b	ENSGT00940000161166 #26	ENSGT00910000147126	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00860000135787	ENSGT00940000155272.ac #24	ENSGT00730000111729 #33	ENSGT00940000155272.`c.b #24	ENSGT00940000155824.C #34	ENSGT00940000165766
Cercopithecinae	ANCESTRAL SPECIES		ENSGT00940000159332 #9	ENSGT00550000074801.h.c.b.a.a	ENSGT00940000163099 #10	ENSGT00390000015205	ENSGT00940000162278 #11	ENSGT00940000163434 #12	ENSGT00940000158387 #13	ENSGT00940000161290	ENSGT00390000002053 #15	ENSGT00390000001528 #16	ENSGT00950000183034.B #17	ENSGT00940000156790 #18	ENSGT00390000017955.c.s #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214 #22	ENSGT00940000155272.`c.a #24	ENSGT00390000009130.a.b #23	ENSGT00940000158790 #25	ENSGT00390000004380.m.a.a.b	ENSGT00940000161166 #26	ENSGT00910000147126	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000155272.ac #24	ENSGT00860000135787	ENSGT00940000155272.`c.b #24	ENSGT00730000111729 #33	ENSGT00940000155824.C #34	ENSGT00390000002919.u #35
Vervet Monkey	MODERN SPECIES	12	RIMS3 (ENSCSAG00000001151) #9	ZNF684 (ENSCSAG00000001150) #10	EXO5 (ENSCSAG00000000137)	ZFP69 (ENSCSAG00000001149) #11	ZFP69B (ENSCSAG00000001148) #12	SMAP2 (ENSCSAG00000001147) #13	COL9A2 (ENSCSAG00000001146)	ZMPSTE24 (ENSCSAG00000001145) #15	TMCO2 (ENSCSAG00000001144) #16	RLF (ENSCSAG00000001143) #17	ENSCSAG00000001142	PPT1 (ENSCSAG00000001141) #18	CAP1 (ENSCSAG00000001140) #19	MFSD2A (ENSCSAG00000001139) #20	MYCL (ENSCSAG00000001138) #21	TRIT1 (ENSCSAG00000001137) #22	ENSCSAG00000001136 #24	PABPC4 (ENSCSAG00000001135) #29	HEYL (ENSCSAG00000001134) #28	NT5C1A (ENSCSAG00000001133) #27	HPCAL4 (ENSCSAG00000001132) #26	PPIE (ENSCSAG00000001131) #25	ENSCSAG00000001130 #24	ENSCSAG00000001129	MACF1 (ENSCSAG00000001128) #34	AKIRIN1 (ENSCSAG00000001126) #36	RHBDL2 (ENSCSAG00000001125) #37	GJA9 (ENSCSAG00000000136)	MYCBP (ENSCSAG00000001124)	RRAGC (ENSCSAG00000001123)	POU3F1 (ENSCSAG00000000135)
Cercopithecinae_a	ANCESTRAL SPECIES		ENSGT00940000159332 #9	ENSGT00550000074801.h.c.b.a.a	ENSGT00940000163099 #10	ENSGT00390000015205	ENSGT00940000162278 #11	ENSGT00940000163434 #12	ENSGT00940000158387 #13	ENSGT00940000161290	ENSGT00390000002053 #15	ENSGT00390000001528 #16	ENSGT00950000183034.B #17	ENSGT00940000156790 #18	ENSGT00390000017955.c.s #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214 #22	ENSGT00940000155272.`c.a #24	ENSGT00390000009130.a.b #23	ENSGT00940000158790 #25	ENSGT00390000004380.m.a.a.b	ENSGT00940000161166 #26	ENSGT00910000147126	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000155272.ac #24	ENSGT00860000135787	ENSGT00940000155272.`c.b #24	ENSGT00730000111729 #33	ENSGT00940000155824.C #34	ENSGT00390000002919.u #35
Macaca	ANCESTRAL SPECIES		ENSGT00940000155689.c #8	ENSGT00940000159332 #9	ENSGT00940000163099 #10	ENSGT00390000015205	ENSGT00940000162278 #11	ENSGT00940000163434 #12	ENSGT00940000158387 #13	ENSGT00940000161290	ENSGT00390000002053 #15	ENSGT00390000001528 #16	ENSGT00950000183034.B #17	ENSGT00940000156790 #18	ENSGT00390000017955.c.s #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214 #22	ENSGT00940000155272.`c.a #24	ENSGT00390000009130.a.b #23	ENSGT00940000158790 #25	ENSGT00390000004380.m.a.a.b	ENSGT00940000161166 #26	ENSGT00910000147126	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00860000135787	ENSGT00940000155272.`c.b #24	ENSGT00940000155824.C #34	ENSGT00390000002919.u #35	ENSGT00390000002919.v.b.a.b #35	ENSGT00940000158787.nb #36
Pig-tailed macaque	MODERN SPECIES	217	NFYC (ENSMNEG00000027645) #8	RIMS3 (ENSMNEG00000034822) #9	ZNF684 (ENSMNEG00000044680) #10	EXO5 (ENSMNEG00000008813)	ZFP69 (ENSMNEG00000036561) #11	ZFP69B (ENSMNEG00000017249) #12	SMAP2 (ENSMNEG00000032255) #13	COL9A2 (ENSMNEG00000043170)	ZMPSTE24 (ENSMNEG00000038045) #15	TMCO2 (ENSMNEG00000034686) #16	RLF (ENSMNEG00000043618) #17	PPT1 (ENSMNEG00000036176) #18	CAP1 (ENSMNEG00000036964) #19	MFSD2A (ENSMNEG00000028513) #20	MYCL (ENSMNEG00000032787) #21	TRIT1 (ENSMNEG00000023137) #22	ENSMNEG00000034094 #24	PPIE (ENSMNEG00000031362) #25	ENSMNEG00000033191	HPCAL4 (ENSMNEG00000028502) #26	ENSMNEG00000002154	NT5C1A (ENSMNEG00000031973) #27	HEYL (ENSMNEG00000009070) #28	ENSMNEG00000043139	PABPC4 (ENSMNEG00000043054) #29	ENSMNEG00000043485 #24	ENSMNEG00000038372 #33	ENSMNEG00000035118	MACF1 (ENSMNEG00000033514) #34	NDUFS5 (ENSMNEG00000027516) #35	AKIRIN1 (ENSMNEG00000038763) #36
Macaca_a	ANCESTRAL SPECIES		ENSGT00940000161627.a.a.a.a.b.a.a.a.b.c.a.b.b.a.a.d	ENSGT00940000163099 #10	ENSGT00390000015205	ENSGT00940000162278 #11	ENSGT00940000158387 #13	ENSGT00940000161290	ENSGT00390000002053 #15	ENSGT00390000001528 #16	ENSGT00950000183034.B #17	ENSGT00940000156790 #18	ENSGT00390000017955.c.s #19	ENSGT00390000005318.b.b.b #20	ENSGT01100000263493.a.a.a.b.b.b.b.a.a.a.a.a.b	ENSGT00940000158613 #21	ENSGT01100000263493.a.a.a.b.a.a.a.a.a.a.b.a.a	ENSGT00390000015214 #22	ENSGT00940000155272.`c.a #24	ENSGT00390000009130.a.b #23	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000155272.`c.b #24	ENSGT00940000155824.C #34	ENSGT00390000002919.u #35	ENSGT00940000158787.nb #36	ENSGT00940000159442 #37	ENSGT01090000260070.C	ENSGT00390000017974.db	ENSGT00950000183031.A.a.a
Rhesus	MODERN SPECIES		ZFP69B (ENSMMUG00000005836) #12	ENSMMUG00000057845	SMAP2 (ENSMMUG00000013839) #13	COL9A2 (ENSMMUG00000018664)	ZMPSTE24 (ENSMMUG00000005992) #15	TMCO2 (ENSMMUG00000052510) #16	RLF (ENSMMUG00000032180) #17	PPT1 (ENSMMUG00000009189) #18	CAP1 (ENSMMUG00000009188) #19	MFSD2A (ENSMMUG00000011264) #20	ENSMMUG00000053512	ENSMMUG00000060377	MYCL (ENSMMUG00000016223) #21	ENSMMUG00000054563	ENSMMUG00000051893	TRIT1 (ENSMMUG00000016220) #22	ENSMMUG00000063318	ENSMMUG00000058881 #24	PPIE (ENSMMUG00000018869) #25	HPCAL4 (ENSMMUG00000044273) #26	NT5C1A (ENSMMUG00000056128) #27	HEYL (ENSMMUG00000050019) #28	PABPC4 (ENSMMUG00000007497) #29	ENSMMUG00000064543 #24	MACF1 (ENSMMUG00000009562) #34	ENSMMUG00000057080	AKIRIN1 (ENSMMUG00000009373) #36	RHBDL2 (ENSMMUG00000032188) #37	MYCBP (ENSMMUG00000039765)	RRAGC (ENSMMUG00000023634)	POU3F1 (ENSMMUG00000044406)
Crab-eating macaque	MODERN SPECIES		EXO5 (ENSMFAG00000008984)	ZFP69 (ENSMFAG00000038294) #11	SMAP2 (ENSMFAG00000044100) #13	COL9A2 (ENSMFAG00000028569)	ZMPSTE24 (ENSMFAG00000044167) #15	ENSMFAG00000053876	TMCO2 (ENSMFAG00000038683) #16	RLF (ENSMFAG00000001299) #17	PPT1 (ENSMFAG00000029038) #18	CAP1 (ENSMFAG00000036663) #19	MFSD2A (ENSMFAG00000003330) #20	ENSMFAG00000058771	ENSMFAG00000063746	MYCL (ENSMFAG00000029625) #21	ENSMFAG00000052885	TRIT1 (ENSMFAG00000001316) #22	ENSMFAG00000058462	ENSMFAG00000041908 #24	ENSMFAG00000031586 #23	PPIE (ENSMFAG00000002082) #25	HPCAL4 (ENSMFAG00000033968) #26	NT5C1A (ENSMFAG00000056414) #27	HEYL (ENSMFAG00000045585) #28	PABPC4 (ENSMFAG00000041481) #29	ENSMFAG00000002753 #24	MACF1 (ENSMFAG00000036050) #34	NDUFS5 (ENSMFAG00000027526) #35	ENSMFAG00000057367	AKIRIN1 (ENSMFAG00000038417) #36	RHBDL2 (ENSMFAG00000033099) #37	GJA9 (ENSMFAG00000028859)
Cercopithecinae_b	ANCESTRAL SPECIES	1	ENSGT00940000159332 #9	ENSGT00550000074801.h.c.b.a.a	ENSGT00940000163099 #10	ENSGT00390000015205	ENSGT00940000162278 #11	ENSGT00940000163434 #12	ENSGT00940000158387 #13	ENSGT00940000161290	ENSGT00390000002053 #15	ENSGT00390000001528 #16	ENSGT00950000183034.B #17	ENSGT00940000156790 #18	ENSGT00390000017955.c.s #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214 #22	ENSGT00940000155272.`c.a #24	ENSGT00940000158790 #25	ENSGT00390000004380.m.a.a.b	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000155272.ac #24	ENSGT00730000111729 #33	ENSGT00940000155272.`c.b #24	ENSGT00940000155824.C #34	ENSGT00390000002919.u #35	ENSGT00390000002919.v.b.b #35	ENSGT00940000158787.nb #36	ENSGT00940000159442 #37
Olive baboon	MODERN SPECIES		KCNQ4 (ENSPANG00000006225) #7	NFYC (ENSPANG00000026473) #8	RIMS3 (ENSPANG00000010023) #9	ZNF684 (ENSPANG00000018123) #10	EXO5 (ENSPANG00000032341)	ZFP69 (ENSPANG00000048994) #11	ZFP69B (ENSPANG00000018450) #12	COL9A2 (ENSPANG00000007011)	ZMPSTE24 (ENSPANG00000007506) #15	TMCO2 (ENSPANG00000006394) #16	RLF (ENSPANG00000018124) #17	PPT1 (ENSPANG00000017273) #18	CAP1 (ENSPANG00000006452) #19	MFSD2A (ENSPANG00000011715) #20	MYCL (ENSPANG00000042839) #21	TRIT1 (ENSPANG00000018125) #22	ENSPANG00000010056 #24	PPIE (ENSPANG00000000575) #25	HPCAL4 (ENSPANG00000006453) #26	NT5C1A (ENSPANG00000025518) #27	HEYL (ENSPANG00000006227) #28	PABPC4 (ENSPANG00000009484) #29	ENSPANG00000006813 #24	MACF1 (ENSPANG00000019093) #34	ENSPANG00000019099 #35	AKIRIN1 (ENSPANG00000004583) #36	RHBDL2 (ENSPANG00000034798) #37	GJA9 (ENSPANG00000006763)	ENSPANG00000029466	RRAGC (ENSPANG00000017086)	POU3F1 (ENSPANG00000009765)
Cercopithecinae_d	ANCESTRAL SPECIES	1	ENSGT00940000159332 #9	ENSGT00550000074801.h.c.b.a.a	ENSGT00940000163099 #10	ENSGT00390000015205	ENSGT00940000162278 #11	ENSGT00940000163434 #12	ENSGT00940000158387 #13	ENSGT00940000161290	ENSGT00390000002053 #15	ENSGT00390000001528 #16	ENSGT00950000183034.B #17	ENSGT00940000156790 #18	ENSGT00390000017955.c.s #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214 #22	ENSGT00940000155272.`c.a #24	ENSGT00940000158790 #25	ENSGT00390000004380.m.a.a.b	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00910000147126	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000155272.ac #24	ENSGT00730000111729 #33	ENSGT00940000155824.C #34	ENSGT00390000002919.v.b.b #35	ENSGT00940000158787.nb #36	ENSGT00940000159442 #37	ENSGT01090000260070.C
Sooty mangabey	MODERN SPECIES	227	NFYC (ENSCATG00000032882) #8	RIMS3 (ENSCATG00000017445) #9	ZNF684 (ENSCATG00000032130) #10	EXO5 (ENSCATG00000003100)	ZFP69 (ENSCATG00000030938) #11	ZFP69B (ENSCATG00000032477) #12	SMAP2 (ENSCATG00000039372) #13	COL9A2 (ENSCATG00000032540)	ZMPSTE24 (ENSCATG00000043666) #15	TMCO2 (ENSCATG00000044427) #16	RLF (ENSCATG00000032206) #17	PPT1 (ENSCATG00000035844) #18	ENSCATG00000035987 #19	MFSD2A (ENSCATG00000032272) #20	MYCL (ENSCATG00000033384) #21	TRIT1 (ENSCATG00000034344) #22	ENSCATG00000037613 #24	PPIE (ENSCATG00000034495) #25	ENSCATG00000032456	HPCAL4 (ENSCATG00000032488) #26	NT5C1A (ENSCATG00000038875) #27	ENSCATG00000036036	HEYL (ENSCATG00000037907) #28	ENSCATG00000005536	ENSCATG00000002769	PABPC4 (ENSCATG00000042164) #29	ENSCATG00000033745 #24	MACF1 (ENSCATG00000039558) #34	ENSCATG00000043856 #33	NDUFS5 (ENSCATG00000034399) #35	AKIRIN1 (ENSCATG00000036878) #36
Drill	MODERN SPECIES	672	RIMS3 (ENSMLEG00000042796) #9	ENSMLEG00000041734	ZNF684 (ENSMLEG00000035552) #10	EXO5 (ENSMLEG00000001570)	ZFP69 (ENSMLEG00000042959) #11	ZFP69B (ENSMLEG00000014259) #12	SMAP2 (ENSMLEG00000032355) #13	COL9A2 (ENSMLEG00000035440)	ZMPSTE24 (ENSMLEG00000037696) #15	TMCO2 (ENSMLEG00000034301) #16	RLF (ENSMLEG00000040465) #17	ENSMLEG00000043746 #18	CAP1 (ENSMLEG00000044449) #19	MFSD2A (ENSMLEG00000040826) #20	MYCL (ENSMLEG00000017162) #21	TRIT1 (ENSMLEG00000035296) #22	ENSMLEG00000044426 #24	PPIE (ENSMLEG00000040735) #25	ENSMLEG00000040607	NT5C1A (ENSMLEG00000038970) #27	ENSMLEG00000032704	HEYL (ENSMLEG00000032705) #28	PABPC4 (ENSMLEG00000040716) #29	ENSMLEG00000006499 #23	MACF1 (ENSMLEG00000044445) #34	ENSMLEG00000040128 #33	ENSMLEG00000043083	AKIRIN1 (ENSMLEG00000044218) #36	RHBDL2 (ENSMLEG00000010184) #37	GJA9 (ENSMLEG00000004074)	ENSMLEG00000044124
Rhinopithecus	ANCESTRAL SPECIES	76	ENSGT00550000074801.h.c.b.a.a	ENSGT00940000163099 #10	ENSGT00390000015205	ENSGT00940000162278 #11	ENSGT00940000163434 #12	ENSGT00940000158387 #13	ENSGT00940000161290	ENSGT00390000002053 #15	ENSGT00390000001528 #16	ENSGT00950000183034.B #17	ENSGT00940000156790 #18	ENSGT00390000017955.c.s #19	ENSGT00390000005318.b.b.b #20	ENSGT00550000076451.a.a.b	ENSGT00940000158613 #21	ENSGT00390000015214 #22	ENSGT00940000155272.`c.a #24	ENSGT00390000009130.a.b #23	ENSGT00940000155272.ac #24	ENSGT00940000158790 #25	ENSGT00390000004380.m.a.a.b	ENSGT00940000161166 #26	ENSGT00910000147126	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00860000135787
Golden snub-nosed monkey	MODERN SPECIES	2906	RIMS3 (ENSRROG00000044320) #9	ZNF684 (ENSRROG00000032375) #10	EXO5 (ENSRROG00000003374)	ZFP69 (ENSRROG00000001028) #11	ZFP69B (ENSRROG00000035064) #12	SMAP2 (ENSRROG00000044815) #13	COL9A2 (ENSRROG00000001908)	ZMPSTE24 (ENSRROG00000029334) #15	TMCO2 (ENSRROG00000041961) #16	RLF (ENSRROG00000028839) #17	PPT1 (ENSRROG00000019913) #18	CAP1 (ENSRROG00000037313) #19	MFSD2A (ENSRROG00000045774) #20	ENSRROG00000042951	MYCL (ENSRROG00000039181) #21	TRIT1 (ENSRROG00000042670) #22	ENSRROG00000036368 #24	PPIE (ENSRROG00000044935) #25	HPCAL4 (ENSRROG00000039612) #26	ENSRROG00000044816	NT5C1A (ENSRROG00000029433) #27	HEYL (ENSRROG00000035732) #28	PABPC4 (ENSRROG00000033355) #29	ENSRROG00000036630	ENSRROG00000035560 #24
Black snub-nosed monkey	MODERN SPECIES	443	RIMS3 (ENSRBIG00000031605) #9	ENSRBIG00000038649	ZNF684 (ENSRBIG00000040446) #10	ZFP69 (ENSRBIG00000031369) #11	ZFP69B (ENSRBIG00000033501) #12	SMAP2 (ENSRBIG00000031486) #13	COL9A2 (ENSRBIG00000030760)	ZMPSTE24 (ENSRBIG00000021858) #15	TMCO2 (ENSRBIG00000037974) #16	RLF (ENSRBIG00000036531) #17	PPT1 (ENSRBIG00000035690) #18	CAP1 (ENSRBIG00000028175) #19	MFSD2A (ENSRBIG00000027966) #20	ENSRBIG00000039892	MYCL (ENSRBIG00000043373) #21	TRIT1 (ENSRBIG00000043179) #22
Platyrrhini	ANCESTRAL SPECIES		ENSGT00940000155689 #8	ENSGT00940000159332 #9	ENSGT00940000163099.g #10	ENSGT00390000015205	ENSGT00940000162278 #11	ENSGT00940000163434 #12	ENSGT00940000158387.a #13	ENSGT00940000161290	ENSGT00390000002053 #15	ENSGT00390000001528 #16	ENSGT00950000183034.B #17	ENSGT00940000156790 #18	ENSGT00390000017955.c.q.a #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214 #22	ENSGT00940000155272.yb #24	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000155272.xb #24	ENSGT00940000155824.C #34	ENSGT00730000111729 #33	ENSGT00390000002919.q #35	ENSGT00940000158787.nb #36	ENSGT00940000159442 #37	ENSGT01090000260070.C	ENSGT00940000165268	ENSGT00390000017974
Cebidae	ANCESTRAL SPECIES	1	ENSGT00940000155689 #8	ENSGT00940000159332 #9	ENSGT00940000163099.g #10	ENSGT00390000015205	ENSGT00940000162278 #11	ENSGT00940000163434 #12	ENSGT00940000158387.a #13	ENSGT00940000161290	ENSGT00390000002053 #15	ENSGT00390000001528 #16	ENSGT00950000183034.B #17	ENSGT00940000156790 #18	ENSGT00390000017955.c.q.a #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214 #22	ENSGT00940000155272.xb #24	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000155272.yb #24	ENSGT00940000155824.C #34	ENSGT00730000111729 #33	ENSGT00390000002919.q #35	ENSGT00940000158787.nb #36	ENSGT00940000159442 #37	ENSGT01090000260070.C	ENSGT00940000165268	ENSGT00390000017974
Cebidae_a	ANCESTRAL SPECIES		ENSGT00940000155689 #8	ENSGT00940000159332 #9	ENSGT00940000163099.g #10	ENSGT00390000015205	ENSGT00940000162278 #11	ENSGT00940000163434 #12	ENSGT00940000158387.a #13	ENSGT00940000161290	ENSGT00390000002053 #15	ENSGT00390000001528 #16	ENSGT00950000183034.B #17	ENSGT00940000156790 #18	ENSGT00390000017955.c.q.a #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214 #22	ENSGT00940000155272.xb #24	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000155272.yb #24	ENSGT00940000155824.C #34	ENSGT00730000111729 #33	ENSGT00390000002919.q.c #35	ENSGT00940000158787.nb #36	ENSGT00940000159442 #37	ENSGT00390000017974	ENSGT00950000183031.A.a.a	ENSGT00940000163458
Capuchin	MODERN SPECIES	385	YARS2 (ENSCCAG00000038073)	PKP2 (ENSCCAG00000019077)	ENSCCAG00000027686 #10	ENSCCAG00000036754 #11	ZFP69B (ENSCCAG00000033657) #12	SMAP2 (ENSCCAG00000037997) #13	COL9A2 (ENSCCAG00000035153)	ZMPSTE24 (ENSCCAG00000024055) #15	TMCO2 (ENSCCAG00000028511) #16	RLF (ENSCCAG00000029606) #17	ENSCCAG00000022725	PPT1 (ENSCCAG00000036658) #18	ENSCCAG00000027519 #19	MFSD2A (ENSCCAG00000030199) #20	MYCL (ENSCCAG00000022829) #21	TRIT1 (ENSCCAG00000031271) #22	ENSCCAG00000035167 #24	PPIE (ENSCCAG00000024434) #25	HPCAL4 (ENSCCAG00000019940) #26	NT5C1A (ENSCCAG00000020441) #27	HEYL (ENSCCAG00000024717) #28	PABPC4 (ENSCCAG00000037306) #29	ENSCCAG00000015253 #24	ENSCCAG00000032988 #23	MACF1 (ENSCCAG00000032251) #34	ENSCCAG00000035166 #33	ENSCCAG00000023836 #35	AKIRIN1 (ENSCCAG00000035175) #36	CMTM4 (ENSCCAG00000025172)	CMTM3 (ENSCCAG00000027209)	CMTM2 (ENSCCAG00000031809)
Bolivian squirrel monkey	MODERN SPECIES	130	NFYC (ENSSBOG00000023269) #8	RIMS3 (ENSSBOG00000013055) #9	ENSSBOG00000036155 #10	EXO5 (ENSSBOG00000009084)	ZFP69 (ENSSBOG00000021129) #11	ZFP69B (ENSSBOG00000029619) #12	SMAP2 (ENSSBOG00000002291) #13	ENSSBOG00000034698 #14	ZMPSTE24 (ENSSBOG00000026426) #15	TMCO2 (ENSSBOG00000036191) #16	RLF (ENSSBOG00000004728) #17	PPT1 (ENSSBOG00000031697) #18	ENSSBOG00000023387 #19	MFSD2A (ENSSBOG00000034208) #20	MYCL (ENSSBOG00000031434) #21	TRIT1 (ENSSBOG00000024417) #22	PPIE (ENSSBOG00000035061) #25	HPCAL4 (ENSSBOG00000028543) #26	NT5C1A (ENSSBOG00000034033) #27	HEYL (ENSSBOG00000035072) #28	PABPC4 (ENSSBOG00000026193) #29	ENSSBOG00000023286 #24	MACF1 (ENSSBOG00000035552) #34	ENSSBOG00000026836 #33	ENSSBOG00000031752 #35	AKIRIN1 (ENSSBOG00000032907) #36	RHBDL2 (ENSSBOG00000026311) #37	MYCBP (ENSSBOG00000030077)	RRAGC (ENSSBOG00000031005)	ENSSBOG00000028225	FHL3 (ENSSBOG00000032864)
Marmoset	MODERN SPECIES	19	RIMS3 (ENSCJAG00000002973) #9	ZNF684 (ENSCJAG00000002965) #10	EXO5 (ENSCJAG00000002961)	ZFP69 (ENSCJAG00000062374) #11	ZFP69B (ENSCJAG00000002952) #12	SMAP2 (ENSCJAG00000002908) #13	COL9A2 (ENSCJAG00000002851)	ENSCJAG00000075493	ZMPSTE24 (ENSCJAG00000002833) #15	TMCO2 (ENSCJAG00000002830) #16	RLF (ENSCJAG00000042605) #17	PPT1 (ENSCJAG00000002798) #18	CAP1 (ENSCJAG00000002738) #19	MFSD2A (ENSCJAG00000002712) #20	MYCL (ENSCJAG00000002700) #21	TRIT1 (ENSCJAG00000002620) #22	PPIE (ENSCJAG00000002589) #25	HPCAL4 (ENSCJAG00000041542) #26	NT5C1A (ENSCJAG00000002566) #27	HEYL (ENSCJAG00000065395) #28	ENSCJAG00000002512 #29	ENSCJAG00000002504 #24	ENSCJAG00000083308	MACF1 (ENSCJAG00000002323) #34	ENSCJAG00000045917 #35	ENSCJAG00000043919 #36	ENSCJAG00000082857	RHBDL2 (ENSCJAG00000002293) #37	GJA9 (ENSCJAG00000002288)	ENSCJAG00000073854	RRAGC (ENSCJAG00000045612)
Mas night monkey	MODERN SPECIES	604	KCNQ4 (ENSANAG00000021072) #7	NFYC (ENSANAG00000020951) #8	RIMS3 (ENSANAG00000029140) #9	ENSANAG00000020223 #10	ZFP69 (ENSANAG00000027896) #11	ZFP69B (ENSANAG00000033029) #12	SMAP2 (ENSANAG00000035291) #13	COL9A2 (ENSANAG00000036329)	ZMPSTE24 (ENSANAG00000027026) #15	TMCO2 (ENSANAG00000033235) #16	RLF (ENSANAG00000031894) #17	PPT1 (ENSANAG00000026377) #18	ENSANAG00000036880 #19	MFSD2A (ENSANAG00000034076) #20	MYCL (ENSANAG00000035601) #21	TRIT1 (ENSANAG00000030732) #22	ENSANAG00000026668 #24	PPIE (ENSANAG00000033595) #25	HPCAL4 (ENSANAG00000025899) #26	NT5C1A (ENSANAG00000037589) #27	ENSANAG00000035822	HEYL (ENSANAG00000019401) #28	PABPC4 (ENSANAG00000025079) #29	ENSANAG00000034394 #24	ENSANAG00000034250 #33	MACF1 (ENSANAG00000033273) #34	ENSANAG00000006239	ENSANAG00000000718	ENSANAG00000030654 #35	AKIRIN1 (ENSANAG00000024590) #36	ENSANAG00000021869 #37
Tarsier	MODERN SPECIES	7096															MYCL (ENSTSYG00000009275) #21	TRIT1 (ENSTSYG00000004363) #22	HSPA8 (ENSTSYG00000036507)	CLMP (ENSTSYG00000002660)	GRAMD1B (ENSTSYG00000025695)	SCN3B (ENSTSYG00000000101)	ZNF202 (ENSTSYG00000036828)	ENSTSYG00000031930	OR6M1 (ENSTSYG00000000862)	TMEM225 (ENSTSYG00000002218)	OR8D4 (ENSTSYG00000008358)
Strepsirrhini	ANCESTRAL SPECIES		ENSGT00940000155689 #8	ENSGT00940000159332 #9	ENSGT00940000163099 #10	ENSGT00390000015205	ENSGT00940000162278 #11	ENSGT00940000163434 #12	ENSGT00940000158387 #13	ENSGT00940000161290	ENSGT00390000002053 #15	ENSGT00390000001528 #16	ENSGT00950000183034.B #17	ENSGT00940000156790 #18	ENSGT00390000017955.c #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214 #22	ENSGT00940000155272 #24	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00390000009130.a.b #23	ENSGT00940000155824.C #34	ENSGT00730000111729 #33	ENSGT00390000002919 #35	ENSGT00940000158787.nb #36	ENSGT00940000159442 #37	ENSGT01090000260070.C	ENSGT00390000017974	ENSGT00950000183031.A.a.a	ENSGT00940000163458
Lemuriformes	ANCESTRAL SPECIES		ENSGT00940000155689 #8	ENSGT00940000159332 #9	ENSGT00940000163099 #10	ENSGT00390000015205	ENSGT00940000162278 #11	ENSGT00940000163434 #12	ENSGT00940000158387 #13	ENSGT00940000161290	ENSGT00390000002053 #15	ENSGT00390000001528 #16	ENSGT00950000183034.B #17	ENSGT00940000156790 #18	ENSGT00390000017955.c #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214 #22	ENSGT00940000155272 #24	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00390000009130.a.b #23	ENSGT00940000155824.C #34	ENSGT00730000111729 #33	ENSGT00390000002919 #35	ENSGT00940000158787.nb #36	ENSGT00940000159442 #37	ENSGT01090000260070.C	ENSGT00390000017974	ENSGT00950000183031.A.a.a	ENSGT00940000163458
Mouse lemur	MODERN SPECIES	11	KCNQ4 (ENSMICG00000046630) #7	NFYC (ENSMICG00000004285) #8	RIMS3 (ENSMICG00000004270) #9	ZNF684 (ENSMICG00000044852) #10	ZFP69 (ENSMICG00000007201) #11	ZFP69B (ENSMICG00000042001) #12	SMAP2 (ENSMICG00000015504) #13	COL9A2 (ENSMICG00000009969)	ZMPSTE24 (ENSMICG00000000308) #15	TMCO2 (ENSMICG00000014156) #16	RLF (ENSMICG00000000307) #17	ENSMICG00000000250 #18	CAP1 (ENSMICG00000000248) #19	MFSD2A (ENSMICG00000016306) #20	MYCL (ENSMICG00000030328) #21	TRIT1 (ENSMICG00000016294) #22	ENSMICG00000034577 #24	ENSMICG00000016676 #30	HPCAL4 (ENSMICG00000034680) #26	NT5C1A (ENSMICG00000016662) #27	HEYL (ENSMICG00000030376) #28	ENSMICG00000042198	PABPC4 (ENSMICG00000016633) #29	ENSMICG00000044077 #30	ENSMICG00000043579 #24	MACF1 (ENSMICG00000016523) #34	ENSMICG00000042874	NDUFS5 (ENSMICG00000016518) #35	AKIRIN1 (ENSMICG00000016510) #36	RHBDL2 (ENSMICG00000006246) #37	ENSMICG00000031944
Lemuriformes_a	ANCESTRAL SPECIES	72	ENSGT00940000155689 #8	ENSGT00940000159332 #9	ENSGT00940000163099 #10	ENSGT00390000015205	ENSGT00940000162278 #11	ENSGT00940000163434 #12	ENSGT00940000158387 #13	ENSGT00940000161290	ENSGT00390000002053 #15	ENSGT00390000001528 #16	ENSGT00950000183034.B #17	ENSGT00940000156790 #18	ENSGT00390000017955.c #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214 #22	ENSGT00940000154788 #29	ENSGT00940000161351 #28	ENSGT00390000017767.b.b #27	ENSGT00940000161166 #26	ENSGT00940000158790 #25	ENSGT00940000155272 #24	ENSGT00390000009130.a.b #23	ENSGT00940000155824.C #34	ENSGT00730000111729 #33	ENSGT00390000002919 #35	ENSGT00940000158787.nb #36	ENSGT00940000159442 #37	ENSGT01090000260070.C	ENSGT00390000017974	ENSGT00950000183031.A.a.a
Greater bamboo lemur	MODERN SPECIES	508													ENSPSMG00000011544 #19	MFSD2A (ENSPSMG00000011402) #20	MYCL (ENSPSMG00000011381) #21	TRIT1 (ENSPSMG00000011292) #22
Coquerels sifaka	MODERN SPECIES	357	KCNQ4 (ENSPCOG00000021204) #7	NFYC (ENSPCOG00000021083) #8	RIMS3 (ENSPCOG00000028045) #9	ZNF684 (ENSPCOG00000026540) #10	ZFP69 (ENSPCOG00000028710) #11	ZFP69B (ENSPCOG00000017570) #12	SMAP2 (ENSPCOG00000026437) #13	COL9A2 (ENSPCOG00000022937)	ZMPSTE24 (ENSPCOG00000016460) #15	TMCO2 (ENSPCOG00000009437) #16	RLF (ENSPCOG00000027247) #17	PPT1 (ENSPCOG00000010059) #18	CAP1 (ENSPCOG00000009880) #19	MFSD2A (ENSPCOG00000013582) #20	MYCL (ENSPCOG00000021177) #21	TRIT1 (ENSPCOG00000014150) #22	PABPC4 (ENSPCOG00000023725) #29	HEYL (ENSPCOG00000000827) #28	NT5C1A (ENSPCOG00000015476) #27	HPCAL4 (ENSPCOG00000013420) #26	ENSPCOG00000014516 #30	ENSPCOG00000024778 #23	MACF1 (ENSPCOG00000027318) #34	ENSPCOG00000025754	NDUFS5 (ENSPCOG00000016682) #35	AKIRIN1 (ENSPCOG00000028364) #36	RHBDL2 (ENSPCOG00000018792) #37	MYCBP (ENSPCOG00000016054)	ENSPCOG00000007138	POU3F1 (ENSPCOG00000005829)	UTP11 (ENSPCOG00000019349)
Bushbaby	MODERN SPECIES	259	KCNQ4 (ENSOGAG00000012616) #7	NFYC (ENSOGAG00000012614) #8	RIMS3 (ENSOGAG00000006117) #9	ENSOGAG00000014249 #10	ZFP69 (ENSOGAG00000009257) #11	ZFP69B (ENSOGAG00000009114) #12	SMAP2 (ENSOGAG00000009115) #13	COL9A2 (ENSOGAG00000010159)	ZMPSTE24 (ENSOGAG00000008841) #15	TMCO2 (ENSOGAG00000002767) #16	RLF (ENSOGAG00000002764) #17	PPT1 (ENSOGAG00000005495) #18	CAP1 (ENSOGAG00000005492) #19	MFSD2A (ENSOGAG00000005489) #20	MYCL (ENSOGAG00000015380) #21	TRIT1 (ENSOGAG00000009571) #22	ENSOGAG00000025082 #24	PPIE (ENSOGAG00000003620) #25	HPCAL4 (ENSOGAG00000031345) #26	NT5C1A (ENSOGAG00000003617) #27	HEYL (ENSOGAG00000030877) #28	PABPC4 (ENSOGAG00000004067) #29	ENSOGAG00000029048 #24	MACF1 (ENSOGAG00000000073) #34	AKIRIN1 (ENSOGAG00000007962) #36	RHBDL2 (ENSOGAG00000014547) #37	GJA9 (ENSOGAG00000014545)	MYCBP (ENSOGAG00000024435)	RRAGC (ENSOGAG00000014541)	POU3F1 (ENSOGAG00000029584)	UTP11 (ENSOGAG00000016492)
Atlantogenata	ANCESTRAL SPECIES	11	ENSGT00940000155689 #8	ENSGT00940000159332 #9	ENSGT00940000163099 #10	ENSGT00390000015205	ENSGT00940000162278 #11	ENSGT00940000163434 #12	ENSGT00940000158387 #13	ENSGT00940000161290	ENSGT00390000002053 #15	ENSGT00390000001528 #16	ENSGT00950000183034.B #17	ENSGT00940000156790 #18	ENSGT00390000017955.c #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214 #22	ENSGT00940000155272 #24	ENSGT00390000009130.a.b #23	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29
Afrotheria	ANCESTRAL SPECIES	42	ENSGT00940000155689 #8	ENSGT00940000159332 #9	ENSGT00940000163099 #10	ENSGT00390000015205	ENSGT00940000162278 #11	ENSGT00940000163434 #12	ENSGT00940000158387 #13	ENSGT00940000161290	ENSGT00390000002053 #15	ENSGT00390000001528 #16	ENSGT00950000183034.B #17	ENSGT00940000156790 #18	ENSGT00390000017955.c #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214 #22	ENSGT00940000155272 #24	ENSGT00390000009130.a.b #23	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29
Afrotheria_a	ANCESTRAL SPECIES	42	ENSGT00940000155689 #8	ENSGT00940000159332 #9	ENSGT00940000163099 #10	ENSGT00390000015205	ENSGT00940000162278 #11	ENSGT00940000163434 #12	ENSGT00940000158387 #13	ENSGT00940000161290	ENSGT00390000002053 #15	ENSGT00390000001528 #16	ENSGT00950000183034.B #17	ENSGT00940000156790 #18	ENSGT00390000017955.c #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214 #22	ENSGT00940000155272 #24	ENSGT00390000009130.a.b #23	ENSGT00940000158790 #25	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29
Elephant	MODERN SPECIES	332	CITED4 (ENSLAFG00000031244)	NFYC (ENSLAFG00000001223) #8	KCNQ4 (ENSLAFG00000023336) #7	RIMS3 (ENSLAFG00000010340) #9	EXO5 (ENSLAFG00000011024)	ZFP69B (ENSLAFG00000011022) #12	SMAP2 (ENSLAFG00000008783) #13	COL9A2 (ENSLAFG00000004588)	ZMPSTE24 (ENSLAFG00000015734) #15	TMCO2 (ENSLAFG00000015728) #16	RLF (ENSLAFG00000015722) #17	PPT1 (ENSLAFG00000022663) #18	CAP1 (ENSLAFG00000005592) #19	MFSD2A (ENSLAFG00000003074) #20	ENSLAFG00000001935 #21	TRIT1 (ENSLAFG00000016876) #22	ENSLAFG00000031581 #24	ENSLAFG00000008493 #25	HPCAL4 (ENSLAFG00000012324) #26	NT5C1A (ENSLAFG00000027551) #27	HEYL (ENSLAFG00000027563) #28	PABPC4 (ENSLAFG00000000151) #29	ENSLAFG00000028312 #25	ENSLAFG00000017624 #23	ENSLAFG00000010722 #24	ENSLAFG00000030249 #33	MACF1 (ENSLAFG00000011552) #34	NDUFS5 (ENSLAFG00000016100) #35	AKIRIN1 (ENSLAFG00000029942) #36	RHBDL2 (ENSLAFG00000002521) #37	GJA9 (ENSLAFG00000018113)
Hyrax	MODERN SPECIES	2411																TRIT1 (ENSPCAG00000014680) #22
Tenrec	MODERN SPECIES	2523																TRIT1 (ENSETEG00000008733) #22
Xenarthra	ANCESTRAL SPECIES	150	ENSGT00940000155689 #8	ENSGT00940000159332 #9	ENSGT00940000163099 #10	ENSGT00390000015205	ENSGT00940000162278 #11	ENSGT00940000163434 #12	ENSGT00940000158387 #13	ENSGT00940000161290	ENSGT00390000002053 #15	ENSGT00390000001528 #16	ENSGT00950000183034.B #17	ENSGT00940000156790 #18	ENSGT00390000017955.c #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214 #22
Armadillo	MODERN SPECIES	767	ENSDNOG00000045744	RIMS3 (ENSDNOG00000033940) #9	ZNF684 (ENSDNOG00000032206) #10	EXO5 (ENSDNOG00000042481)	ZFP69 (ENSDNOG00000007479) #11	ZFP69B (ENSDNOG00000017460) #12	SMAP2 (ENSDNOG00000007914) #13	COL9A2 (ENSDNOG00000043096)	ZMPSTE24 (ENSDNOG00000038575) #15	TMCO2 (ENSDNOG00000045954) #16	RLF (ENSDNOG00000035279) #17	PPT1 (ENSDNOG00000005527) #18	ENSDNOG00000016869 #19	MFSD2A (ENSDNOG00000014078) #20	MYCL (ENSDNOG00000001996) #21	TRIT1 (ENSDNOG00000001994) #22	ENSDNOG00000044541 #24	ENSDNOG00000034942 #25	NT5C1A (ENSDNOG00000014666) #27	HEYL (ENSDNOG00000010392) #28	ENSDNOG00000018444 #29	ENSDNOG00000002404 #25	ENSDNOG00000040636 #24	ENSDNOG00000041309
Sloth	MODERN SPECIES	2645																TRIT1 (ENSCHOG00000000435) #22
Marsupialia	DUPLICATION
Marsupialia	ANCESTRAL SPECIES	10	ENSGT00980000198702	ENSGT00940000155722	ENSGT00940000160023	ENSGT00940000159209 #7	ENSGT00940000155689 #8	ENSGT00940000159332 #9	ENSGT00940000158387 #13	ENSGT00940000161290	ENSGT00390000002053 #15	ENSGT00390000001528 #16	ENSGT00950000183034.B #17	ENSGT00940000156790 #18	ENSGT00390000017955.c #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214.w #22	ENSGT00940000178388	ENSGT00390000015159.a.a	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000158790 #25	ENSGT00940000155272 #24	ENSGT00940000155824.C #34	ENSGT00390000002919 #35	ENSGT00940000158787 #36	ENSGT00940000159442 #37	ENSGT00390000017974	ENSGT00950000183031.A.a.a	ENSGT00940000163458
Opossum	MODERN SPECIES	3	ENSMODG00000040929	PEF1 (ENSMODG00000017573)	TINAGL1 (ENSMODG00000028729)	KCNQ4 (ENSMODG00000017582) #7	NFYC (ENSMODG00000017585) #8	RIMS3 (ENSMODG00000017587) #9	SMAP2 (ENSMODG00000017597) #13	COL9A2 (ENSMODG00000017617)	ZMPSTE24 (ENSMODG00000017624) #15	ENSMODG00000017626 #16	RLF (ENSMODG00000017631) #17	PPT1 (ENSMODG00000017638) #18	CAP1 (ENSMODG00000017643) #19	MFSD2A (ENSMODG00000017646) #20	ENSMODG00000017647 #21	TRIT1 (ENSMODG00000041050) #22	ENSMODG00000017650	ENSMODG00000017652	ENSMODG00000017653 #28	PABPC4 (ENSMODG00000017657) #29	PPIE (ENSMODG00000017659) #25	ENSMODG00000017664 #24	MACF1 (ENSMODG00000017689) #34	ENSMODG00000048410 #35	ENSMODG00000017703 #36	RHBDL2 (ENSMODG00000047333) #37	MYCBP (ENSMODG00000038621)	RRAGC (ENSMODG00000017710)	POU3F1 (ENSMODG00000017713)	UTP11 (ENSMODG00000017717)	FHL3 (ENSMODG00000017719)
Marsupialia_b	ANCESTRAL SPECIES	4	ENSGT00940000155722	ENSGT00940000160023	ENSGT00940000159209 #7	ENSGT00940000155689 #8	ENSGT00940000159332 #9	ENSGT00940000158387 #13	ENSGT00940000161290	ENSGT00390000002053 #15	ENSGT00390000001528 #16	ENSGT00950000183034.B #17	ENSGT00940000156790 #18	ENSGT00390000017955.c #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214.x #22	ENSGT00390000015214.w #22	ENSGT00390000015159.a.a	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000158790 #25	ENSGT00940000155272 #24	ENSGT00940000155824.C #34	ENSGT00390000002919 #35	ENSGT00940000158787 #36	ENSGT00940000159442 #37	ENSGT00940000165268	ENSGT00390000017974	ENSGT00950000183031.A.a.a	ENSGT00940000163458
Diprotodontia	ANCESTRAL SPECIES	3	ENSGT00940000155722	ENSGT00940000160023	ENSGT00940000159209 #7	ENSGT00940000155689 #8	ENSGT00940000159332 #9	ENSGT00940000158387 #13	ENSGT00940000161290	ENSGT00390000002053 #15	ENSGT00390000001528 #16	ENSGT00950000183034.B #17	ENSGT00940000156790 #18	ENSGT00390000017955.c #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214.x #22	ENSGT00390000015214.w #22	ENSGT00390000015159.a.a	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000158790 #25	ENSGT00940000155272 #24	ENSGT00940000155824.C #34	ENSGT00390000002919 #35	ENSGT00940000158787 #36	ENSGT00940000159442 #37	ENSGT00940000165268	ENSGT00390000017974	ENSGT00950000183031.A.a.a	ENSGT00940000163458
Diprotodontia_a	ANCESTRAL SPECIES	4	ENSGT00940000155722.k	ENSGT00940000160023	ENSGT00940000159209 #7	ENSGT00940000155689 #8	ENSGT00940000159332 #9	ENSGT00940000158387 #13	ENSGT00940000161290	ENSGT00390000002053 #15	ENSGT00390000001528 #16	ENSGT00950000183034.B #17	ENSGT00940000156790 #18	ENSGT00390000017955.c #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214.x #22	ENSGT00390000015214.w #22	ENSGT00390000015159.a.a	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000158790 #25	ENSGT00940000155272 #24	ENSGT00940000155824.C #34	ENSGT00390000002919 #35	ENSGT00940000158787 #36	ENSGT00940000159442 #37	ENSGT00940000165268	ENSGT00950000183031.A.a.a	ENSGT00940000163458	ENSGT00390000005813
koala	MODERN SPECIES	14	ENSPCIG00000036838	ENSPCIG00000020642	TINAGL1 (ENSPCIG00000020646)	KCNQ4 (ENSPCIG00000014308) #7	NFYC (ENSPCIG00000020649) #8	RIMS3 (ENSPCIG00000020652) #9	SMAP2 (ENSPCIG00000020653) #13	ZMPSTE24 (ENSPCIG00000020656) #15	ENSPCIG00000020658 #16	RLF (ENSPCIG00000032935) #17	ENSPCIG00000020660	PPT1 (ENSPCIG00000020661) #18	CAP1 (ENSPCIG00000020662) #19	MFSD2A (ENSPCIG00000020664) #20	MYCL (ENSPCIG00000020665) #21	TRIT1 (ENSPCIG00000020666) #22	ENSPCIG00000020667	ENSPCIG00000020669 #26	NT5C1A (ENSPCIG00000020671) #27	HEYL (ENSPCIG00000032718) #28	PABPC4 (ENSPCIG00000020674) #29	PPIE (ENSPCIG00000021413) #25	ENSPCIG00000021415 #24	MACF1 (ENSPCIG00000021470) #34	ENSPCIG00000024467 #35	AKIRIN1 (ENSPCIG00000024469) #36	RHBDL2 (ENSPCIG00000024471) #37	ENSPCIG00000024472	RRAGC (ENSPCIG00000024474)	POU3F1 (ENSPCIG00000025707)	UTP11 (ENSPCIG00000025711)
Common wonbat	MODERN SPECIES	1014	ENSVURG00010001594	TINAGL1 (ENSVURG00010001605)	KCNQ4 (ENSVURG00010001636) #7	NFYC (ENSVURG00010001799) #8	RIMS3 (ENSVURG00010001849) #9	SMAP2 (ENSVURG00010001866) #13	COL9A2 (ENSVURG00010001881)	ZMPSTE24 (ENSVURG00010001947) #15	ENSVURG00010001972 #16	RLF (ENSVURG00010001989) #17	PPT1 (ENSVURG00010002003) #18	CAP1 (ENSVURG00010002032) #19	MFSD2A (ENSVURG00010002108) #20	MYCL (ENSVURG00010002118) #21	ENSVURG00010002124 #22	ENSVURG00010002142 #22	ENSVURG00010002167	NT5C1A (ENSVURG00010002203) #27	HEYL (ENSVURG00010002224) #28	PABPC4 (ENSVURG00010002229) #29	PPIE (ENSVURG00010002243) #25	ENSVURG00010002262 #24	MACF1 (ENSVURG00010002288) #34	NDUFS5 (ENSVURG00010002462) #35	AKIRIN1 (ENSVURG00010002475) #36	RHBDL2 (ENSVURG00010002516) #37	ENSVURG00010002524	RRAGC (ENSVURG00010002533)	POU3F1 (ENSVURG00010002566)	UTP11 (ENSVURG00010002579)	FHL3 (ENSVURG00010002588)
Wallaby	MODERN SPECIES	3914																TRIT1 (ENSMEUG00000005217) #22
Tasmanian devil	MODERN SPECIES	2	COL16A1 (ENSSHAG00000010645)	ENSSHAG00000010460	ENSSHAG00000028220	ENSSHAG00000009630 #7	NFYC (ENSSHAG00000009190) #8	RIMS3 (ENSSHAG00000032120) #9	SMAP2 (ENSSHAG00000007665) #13	ENSSHAG00000007143 #14	ZMPSTE24 (ENSSHAG00000006392) #15	RLF (ENSSHAG00000005088) #17	PPT1 (ENSSHAG00000002339) #18	CAP1 (ENSSHAG00000001626) #19	ENSSHAG00000004229 #20	ENSSHAG00000018449 #21	ENSSHAG00000022663 #22	ENSSHAG00000027288 #22	ENSSHAG00000018329	ENSSHAG00000031508 #26	NT5C1A (ENSSHAG00000018265) #27	HEYL (ENSSHAG00000018213) #28	PABPC4 (ENSSHAG00000018139) #29	ENSSHAG00000020938 #25	ENSSHAG00000022489 #24	MACF1 (ENSSHAG00000017549) #34	AKIRIN1 (ENSSHAG00000017487) #36	RHBDL2 (ENSSHAG00000017389) #37	ENSSHAG00000027443	RRAGC (ENSSHAG00000031233)	ENSSHAG00000023962	ENSSHAG00000026433	POU3F1 (ENSSHAG00000030947)
Marsupialia	ANCESTRAL SPECIES																	ENSGT00390000015214.x #22
Marsupialia_b	ANCESTRAL SPECIES	4	ENSGT00980000198702	ENSGT00940000155722	ENSGT00940000160023	ENSGT00940000159209 #7	ENSGT00940000155689 #8	ENSGT00940000159332 #9	ENSGT00940000158387 #13	ENSGT00940000161290	ENSGT00390000002053 #15	ENSGT00390000001528 #16	ENSGT00950000183034.B #17	ENSGT00940000156790 #18	ENSGT00390000017955.c #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214.x #22	ENSGT00390000015214.w #22	ENSGT00390000015159.a.a	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000158790 #25	ENSGT00940000155272 #24	ENSGT00940000155824.C #34	ENSGT00390000002919 #35	ENSGT00940000158787 #36	ENSGT00940000159442 #37	ENSGT00940000165268	ENSGT00390000017974	ENSGT00950000183031.A.a.a
Tasmanian devil	MODERN SPECIES	2	ADGRB2 (ENSSHAG00000011480)	COL16A1 (ENSSHAG00000010645)	ENSSHAG00000010460	ENSSHAG00000028220	ENSSHAG00000009630 #7	NFYC (ENSSHAG00000009190) #8	RIMS3 (ENSSHAG00000032120) #9	SMAP2 (ENSSHAG00000007665) #13	ENSSHAG00000007143 #14	ZMPSTE24 (ENSSHAG00000006392) #15	RLF (ENSSHAG00000005088) #17	PPT1 (ENSSHAG00000002339) #18	CAP1 (ENSSHAG00000001626) #19	ENSSHAG00000004229 #20	ENSSHAG00000018449 #21	ENSSHAG00000022663 #22	ENSSHAG00000027288 #22	ENSSHAG00000018329	ENSSHAG00000031508 #26	NT5C1A (ENSSHAG00000018265) #27	HEYL (ENSSHAG00000018213) #28	PABPC4 (ENSSHAG00000018139) #29	ENSSHAG00000020938 #25	ENSSHAG00000022489 #24	MACF1 (ENSSHAG00000017549) #34	AKIRIN1 (ENSSHAG00000017487) #36	RHBDL2 (ENSSHAG00000017389) #37	ENSSHAG00000027443	RRAGC (ENSSHAG00000031233)	ENSSHAG00000023962	ENSSHAG00000026433
Diprotodontia	ANCESTRAL SPECIES	3	ENSGT00980000198702	ENSGT00940000155722	ENSGT00940000160023	ENSGT00940000159209 #7	ENSGT00940000155689 #8	ENSGT00940000159332 #9	ENSGT00940000158387 #13	ENSGT00940000161290	ENSGT00390000002053 #15	ENSGT00390000001528 #16	ENSGT00950000183034.B #17	ENSGT00940000156790 #18	ENSGT00390000017955.c #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214.x #22	ENSGT00390000015214.w #22	ENSGT00390000015159.a.a	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000158790 #25	ENSGT00940000155272 #24	ENSGT00940000155824.C #34	ENSGT00390000002919 #35	ENSGT00940000158787 #36	ENSGT00940000159442 #37	ENSGT00940000165268	ENSGT00390000017974	ENSGT00950000183031.A.a.a
Diprotodontia_a	ANCESTRAL SPECIES	4	ENSGT00980000198702	ENSGT00940000155722.k	ENSGT00940000160023	ENSGT00940000159209 #7	ENSGT00940000155689 #8	ENSGT00940000159332 #9	ENSGT00940000158387 #13	ENSGT00940000161290	ENSGT00390000002053 #15	ENSGT00390000001528 #16	ENSGT00950000183034.B #17	ENSGT00940000156790 #18	ENSGT00390000017955.c #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214.x #22	ENSGT00390000015214.w #22	ENSGT00390000015159.a.a	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000158790 #25	ENSGT00940000155272 #24	ENSGT00940000155824.C #34	ENSGT00390000002919 #35	ENSGT00940000158787 #36	ENSGT00940000159442 #37	ENSGT00940000165268	ENSGT00950000183031.A.a.a	ENSGT00940000163458
Common wonbat	MODERN SPECIES	1014	ENSVURG00010001579	ENSVURG00010001594	TINAGL1 (ENSVURG00010001605)	KCNQ4 (ENSVURG00010001636) #7	NFYC (ENSVURG00010001799) #8	RIMS3 (ENSVURG00010001849) #9	SMAP2 (ENSVURG00010001866) #13	COL9A2 (ENSVURG00010001881)	ZMPSTE24 (ENSVURG00010001947) #15	ENSVURG00010001972 #16	RLF (ENSVURG00010001989) #17	PPT1 (ENSVURG00010002003) #18	CAP1 (ENSVURG00010002032) #19	MFSD2A (ENSVURG00010002108) #20	MYCL (ENSVURG00010002118) #21	ENSVURG00010002124 #22	ENSVURG00010002142 #22	ENSVURG00010002167	NT5C1A (ENSVURG00010002203) #27	HEYL (ENSVURG00010002224) #28	PABPC4 (ENSVURG00010002229) #29	PPIE (ENSVURG00010002243) #25	ENSVURG00010002262 #24	MACF1 (ENSVURG00010002288) #34	NDUFS5 (ENSVURG00010002462) #35	AKIRIN1 (ENSVURG00010002475) #36	RHBDL2 (ENSVURG00010002516) #37	ENSVURG00010002524	RRAGC (ENSVURG00010002533)	POU3F1 (ENSVURG00010002566)	UTP11 (ENSVURG00010002579)
Platypus	DUPLICATION
Platypus	MODERN SPECIES	7	ENSOANG00000046602	CNR2 (ENSOANG00000006844)	FUCA1 (ENSOANG00000036041)	HMGCL (ENSOANG00000045129)	GALE (ENSOANG00000039510)	LYPLA2 (ENSOANG00000046833)	PITHD1 (ENSOANG00000008890)	ENSOANG00000045912	RPL11 (ENSOANG00000000321)	ENSOANG00000050553	ENSOANG00000012704	PPT1 (ENSOANG00000044277) #18	CAP1 (ENSOANG00000012533) #19	MFSD2A (ENSOANG00000002711) #20	MYCL (ENSOANG00000044318) #21	ENSOANG00000002779 #22	ENSOANG00000046416	ENSOANG00000004880 #26	NT5C1A (ENSOANG00000037806) #27	HEYL (ENSOANG00000046146) #28	PABPC4 (ENSOANG00000010001) #29	PPIE (ENSOANG00000046878) #25	ENSOANG00000010004 #24	MACF1 (ENSOANG00000010005) #34	ENSOANG00000003184 #35	ENSOANG00000003176	ENSOANG00000003185	AZIN2 (ENSOANG00000004884)	AK2 (ENSOANG00000005875)	RNF19B (ENSOANG00000005874)	TMEM54 (ENSOANG00000005873)
Platypus	MODERN SPECIES	11	MAP4K4 (ENSOANG00000008236)	ENSOANG00000016016	ENSOANG00000002853	RNF149 (ENSOANG00000003086)	CNOT11 (ENSOANG00000013148)	MTRF1 (ENSOANG00000003383)	ENSOANG00000050275	ENSOANG00000042040	WBP4 (ENSOANG00000039659)	ELF1 (ENSOANG00000013391)	SUGT1 (ENSOANG00000020356)	CNMD (ENSOANG00000010093)	ENSOANG00000048430	OLFM4 (ENSOANG00000037547)	ENSOANG00000039527	ENSOANG00000016066 #22	PCDH17 (ENSOANG00000041426)	ENSOANG00000038739	DIAPH3 (ENSOANG00000006997)	TDRD3 (ENSOANG00000011775)	ENSOANG00000038658	PCDH20 (ENSOANG00000015235)	ENSOANG00000020115	ENSOANG00000009455	ENSOANG00000048359	KLHL1 (ENSOANG00000006018)	DACH1 (ENSOANG00000006057)	ENSOANG00000048593	BORA (ENSOANG00000010025)	DIS3 (ENSOANG00000010027)	PIBF1 (ENSOANG00000010028)
Sauria	ANCESTRAL SPECIES	23	ENSGT01060000248564.a.b	ENSGT00440000035378.c	ENSGT00940000158484	ENSGT00940000158000	ENSGT00940000156197	ENSGT00490000043398	ENSGT00390000002428.a	ENSGT00940000166197	ENSGT00910000144211.n.a	ENSGT00940000160894	ENSGT00940000156790 #18	ENSGT00390000017955.c #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00940000178962	ENSGT00390000015214 #22	ENSGT00390000015159.a.a	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000158790 #25	ENSGT00940000177851	ENSGT00940000165717 #30	ENSGT00940000155272 #24	ENSGT00980000198642	ENSGT00730000111729 #33	ENSGT00940000155824.C #34	ENSGT00940000165766	ENSGT00390000002919 #35	ENSGT00950000182995.e.a.a.b
Archelosauria	ANCESTRAL SPECIES	25	ENSGT00530000063881.a.b	ENSGT01030000235992	ENSGT01060000248564.a.b	ENSGT00440000035378.c	ENSGT00940000158484	ENSGT00940000158000	ENSGT00940000156197	ENSGT00490000043398	ENSGT00390000002428.a	ENSGT00910000144211.n.a	ENSGT00940000160894	ENSGT00940000156790 #18	ENSGT00390000017955.c #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214 #22	ENSGT00390000015159.a.a	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000158790 #25	ENSGT00940000177851	ENSGT00940000165717 #30	ENSGT00940000155272 #24	ENSGT00980000198642	ENSGT00730000111729 #33	ENSGT00940000155824.C #34	ENSGT00940000165766	ENSGT00390000002919 #35	ENSGT00950000182995.e.a.a.b
Cryptodira	ANCESTRAL SPECIES	31	ENSGT01030000235992	ENSGT01060000248564.a.b	ENSGT00440000035378.c	ENSGT00940000158484	ENSGT00940000158000	ENSGT00940000156197	ENSGT00490000043398	ENSGT00390000002428.a	ENSGT00910000144211.o	ENSGT00940000162741	ENSGT00940000160894	ENSGT00940000156790 #18	ENSGT00390000017955.c #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214 #22	ENSGT00390000015159.a.a	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000158790 #25	ENSGT00940000155272 #24	ENSGT00940000155824.C #34	ENSGT00390000002919 #35	ENSGT00950000182995.e.a.a.b	ENSGT00940000154576	ENSGT00940000158451	ENSGT00390000004700.a	ENSGT00940000158110	ENSGT00390000004923.A
Testudinoidea	ANCESTRAL SPECIES	27	ENSGT00440000035378.c	ENSGT00940000158484	ENSGT00940000158000	ENSGT00940000156197	ENSGT00490000043398	ENSGT00390000002428.a	ENSGT00910000144211.o	ENSGT00940000162741.l.a	ENSGT00940000162741.l.b	ENSGT00940000160894	ENSGT00940000156790 #18	ENSGT00390000017955.c #19	ENSGT00390000005318.b.b.b #20	ENSGT00960000191201	ENSGT00940000158613 #21	ENSGT00390000015214 #22	ENSGT00390000015159.a.a	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000158790 #25	ENSGT00940000155272 #24	ENSGT00940000155824.C #34	ENSGT00390000002919 #35	ENSGT00950000182995.e.a.a.b	ENSGT00940000154576	ENSGT00940000158451	ENSGT00390000004700.a	ENSGT00940000158110	ENSGT00390000004923.A
Emydidae	DUPLICATION
Emydidae	ANCESTRAL SPECIES	39	ENSGT00940000158484	ENSGT00940000158000	ENSGT00940000156197	ENSGT00490000043398	ENSGT00390000002428.a	ENSGT00910000144211.o	ENSGT00940000162741.l.a	ENSGT00940000162741.l.b	ENSGT00940000160894	ENSGT00940000156790 #18	ENSGT00390000017955.c #19	ENSGT00390000005318.b.b.b #20	ENSGT00960000191201	ENSGT00940000158613 #21	ENSGT00390000015214.b #22	ENSGT00390000015214.a #22	ENSGT00390000015159.a.a	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000158790 #25	ENSGT00940000155272 #24	ENSGT00940000155824.C #34	ENSGT00390000002919 #35	ENSGT00950000182995.e.a.a.b	ENSGT00940000154576	ENSGT00940000158451	ENSGT00390000004700.a.a	ENSGT00940000158110	ENSGT00390000004923.A
painted turtle	MODERN SPECIES	757	GALE (ENSCPBG00000000537)	LYPLA2 (ENSCPBG00000000554)	PITHD1 (ENSCPBG00000000565)	ENSCPBG00000000589	ENSCPBG00000000610	RPL11 (ENSCPBG00000000630)	ENSCPBG00000000646	SLC17A4 (ENSCPBG00000000712)	ENSCPBG00000000748	PPT1 (ENSCPBG00000000782) #18	CAP1 (ENSCPBG00000000804) #19	MFSD2A (ENSCPBG00000000842) #20	ENSCPBG00000000859	MYCL (ENSCPBG00000000873) #21	ENSCPBG00000000888 #22	ENSCPBG00000000908 #22	ENSCPBG00000000957	HPCAL4 (ENSCPBG00000000997) #26	NT5C1A (ENSCPBG00000001012) #27	HEYL (ENSCPBG00000001029) #28	PABPC4 (ENSCPBG00000001038) #29	PPIE (ENSCPBG00000001090) #25	ENSCPBG00000001438 #24	MACF1 (ENSCPBG00000003247) #34	NDUFS5 (ENSCPBG00000010979) #35	AZIN2 (ENSCPBG00000010982)	AK2 (ENSCPBG00000010985)	RNF19B (ENSCPBG00000010988)	ENSCPBG00000010990	HPCA (ENSCPBG00000010992)	FNDC5 (ENSCPBG00000010993)
Three-toed box turtle	MODERN SPECIES	111	GALE (ENSTMTG00000014106)	LYPLA2 (ENSTMTG00000014122)	PITHD1 (ENSTMTG00000014138)	ENSTMTG00000014156	ENSTMTG00000014179	RPL11 (ENSTMTG00000014190)	ENSTMTG00000014197	ENSTMTG00000014222	SLC17A4 (ENSTMTG00000014258)	PPT1 (ENSTMTG00000014284) #18	CAP1 (ENSTMTG00000014303) #19	MFSD2A (ENSTMTG00000014333) #20	ENSTMTG00000014362	ENSTMTG00000014375 #21	ENSTMTG00000014383 #22	ENSTMTG00000014397 #22	ENSTMTG00000014418	HPCAL4 (ENSTMTG00000014439) #26	NT5C1A (ENSTMTG00000014465) #27	HEYL (ENSTMTG00000014501) #28	PABPC4 (ENSTMTG00000014585) #29	PPIE (ENSTMTG00000015665) #25	ENSTMTG00000015701	ENSTMTG00000015732 #24	ENSTMTG00000016079 #34	NDUFS5 (ENSTMTG00000016875) #35	AZIN2 (ENSTMTG00000016895)	AK2 (ENSTMTG00000017087)	RNF19B (ENSTMTG00000017094)	TMEM54 (ENSTMTG00000017105)	HPCA (ENSTMTG00000017117)
Emydidae	ANCESTRAL SPECIES	39	ENSGT00440000035378.c	ENSGT00940000158484	ENSGT00940000158000	ENSGT00940000156197	ENSGT00490000043398	ENSGT00390000002428.a	ENSGT00910000144211.o	ENSGT00940000162741.l.a	ENSGT00940000162741.l.b	ENSGT00940000160894	ENSGT00940000156790 #18	ENSGT00390000017955.c #19	ENSGT00390000005318.b.b.b #20	ENSGT00960000191201	ENSGT00940000158613 #21	ENSGT00390000015214.b #22	ENSGT00390000015214.a #22	ENSGT00390000015159.a.a	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000158790 #25	ENSGT00940000155272 #24	ENSGT00940000155824.C #34	ENSGT00390000002919 #35	ENSGT00950000182995.e.a.a.b	ENSGT00940000154576	ENSGT00940000158451	ENSGT00390000004700.a.a	ENSGT00940000158110
Three-toed box turtle	MODERN SPECIES	111	HMGCL (ENSTMTG00000014093)	GALE (ENSTMTG00000014106)	LYPLA2 (ENSTMTG00000014122)	PITHD1 (ENSTMTG00000014138)	ENSTMTG00000014156	ENSTMTG00000014179	RPL11 (ENSTMTG00000014190)	ENSTMTG00000014197	ENSTMTG00000014222	SLC17A4 (ENSTMTG00000014258)	PPT1 (ENSTMTG00000014284) #18	CAP1 (ENSTMTG00000014303) #19	MFSD2A (ENSTMTG00000014333) #20	ENSTMTG00000014362	ENSTMTG00000014375 #21	ENSTMTG00000014383 #22	ENSTMTG00000014397 #22	ENSTMTG00000014418	HPCAL4 (ENSTMTG00000014439) #26	NT5C1A (ENSTMTG00000014465) #27	HEYL (ENSTMTG00000014501) #28	PABPC4 (ENSTMTG00000014585) #29	PPIE (ENSTMTG00000015665) #25	ENSTMTG00000015701	ENSTMTG00000015732 #24	ENSTMTG00000016079 #34	NDUFS5 (ENSTMTG00000016875) #35	AZIN2 (ENSTMTG00000016895)	AK2 (ENSTMTG00000017087)	RNF19B (ENSTMTG00000017094)	TMEM54 (ENSTMTG00000017105)
painted turtle	MODERN SPECIES	757	HMGCL (ENSCPBG00000000518)	GALE (ENSCPBG00000000537)	LYPLA2 (ENSCPBG00000000554)	PITHD1 (ENSCPBG00000000565)	ENSCPBG00000000589	ENSCPBG00000000610	RPL11 (ENSCPBG00000000630)	ENSCPBG00000000646	SLC17A4 (ENSCPBG00000000712)	ENSCPBG00000000748	PPT1 (ENSCPBG00000000782) #18	CAP1 (ENSCPBG00000000804) #19	MFSD2A (ENSCPBG00000000842) #20	ENSCPBG00000000859	MYCL (ENSCPBG00000000873) #21	ENSCPBG00000000888 #22	ENSCPBG00000000908 #22	ENSCPBG00000000957	HPCAL4 (ENSCPBG00000000997) #26	NT5C1A (ENSCPBG00000001012) #27	HEYL (ENSCPBG00000001029) #28	PABPC4 (ENSCPBG00000001038) #29	PPIE (ENSCPBG00000001090) #25	ENSCPBG00000001438 #24	MACF1 (ENSCPBG00000003247) #34	NDUFS5 (ENSCPBG00000010979) #35	AZIN2 (ENSCPBG00000010982)	AK2 (ENSCPBG00000010985)	RNF19B (ENSCPBG00000010988)	ENSCPBG00000010990	HPCA (ENSCPBG00000010992)
Testudinidae	ANCESTRAL SPECIES	4	ENSGT00440000035378.c	ENSGT00940000158484	ENSGT00940000158000	ENSGT00940000156197.bb	ENSGT00490000043398	ENSGT00390000002428.a	ENSGT00910000144211.o	ENSGT00940000162741.l.a	ENSGT00940000162741.l.b	ENSGT00940000160894	ENSGT00940000156790 #18	ENSGT00390000017955.c #19	ENSGT00390000005318.b.b.b #20	ENSGT00960000191201	ENSGT00940000158613 #21	ENSGT00390000015214 #22	ENSGT00390000015159.a.a	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000158790 #25	ENSGT00940000155272 #24	ENSGT00940000155824.C #34	ENSGT00390000002919 #35	ENSGT00950000182995.e.a.a.b	ENSGT00940000158451	ENSGT00940000154576	ENSGT00390000004700.a	ENSGT00940000158110	ENSGT00390000004923.A
Goode s thornscrub tortoise	MODERN SPECIES	12	HMGCL (ENSGEVG00005021158)	GALE (ENSGEVG00005021156)	ENSGEVG00005021152	PITHD1 (ENSGEVG00005021147)	ENSGEVG00005021145	ENSGEVG00005021142	RPL11 (ENSGEVG00005021139)	ENSGEVG00005021135	ENSGEVG00005021133	SLC17A4 (ENSGEVG00005021123)	PPT1 (ENSGEVG00005021118) #18	CAP1 (ENSGEVG00005021114) #19	MFSD2A (ENSGEVG00005021108) #20	ENSGEVG00005021104 #21	ENSGEVG00005021103 #21	TRIT1 (ENSGEVG00005021099) #22	ENSGEVG00005021098	HPCAL4 (ENSGEVG00005021096) #26	NT5C1A (ENSGEVG00005021094) #27	HEYL (ENSGEVG00005021092) #28	PABPC4 (ENSGEVG00005021085) #29	ENSGEVG00005021084	PPIE (ENSGEVG00005021083) #25	ENSGEVG00005021081 #24	MACF1 (ENSGEVG00005014774) #34	ENSGEVG00005009879 #35	AZIN2 (ENSGEVG00005009485)	RNF19B (ENSGEVG00005009284)	AK2 (ENSGEVG00005009232)	TMEM54 (ENSGEVG00005009163)	HPCA (ENSGEVG00005009131)
Abingdon island giant tortoise	MODERN SPECIES	1418	GALE (ENSCABG00000001983)	ENSCABG00000002007	ENSCABG00000002010	ENSCABG00000002011	ENSCABG00000002013	ENSCABG00000002015	ENSCABG00000002017	ENSCABG00000002019	SLC17A4 (ENSCABG00000002023)	PPT1 (ENSCABG00000002026) #18	CAP1 (ENSCABG00000002027) #19	ENSCABG00000002029 #20	ENSCABG00000002031 #20	ENSCABG00000002032	ENSCABG00000002033 #21	TRIT1 (ENSCABG00000002035) #22	ENSCABG00000002037	HPCAL4 (ENSCABG00000002040) #26	NT5C1A (ENSCABG00000002048) #27	HEYL (ENSCABG00000002051) #28	PABPC4 (ENSCABG00000002053) #29	PPIE (ENSCABG00000002061) #25	ENSCABG00000002064 #24	ENSCABG00000002100 #34	ENSCABG00000002104 #33	ENSCABG00000002106 #34	NDUFS5 (ENSCABG00000002109) #35	AZIN2 (ENSCABG00000002110)	MDH2 (ENSCABG00000002129)	ENSCABG00000002378	TMEM120A (ENSCABG00000002380)
Chinese turtle	MODERN SPECIES	2241		LIN28A (ENSPSIG00000018001)	DHDDS (ENSPSIG00000017941)	ENSPSIG00000017933	RPS6KA1 (ENSPSIG00000017619)	ENSPSIG00000000225	ARID1A (ENSPSIG00000017317)	PIGV (ENSPSIG00000017303)	ZDHHC18 (ENSPSIG00000017218)	SFN (ENSPSIG00000000212)	GPN2 (ENSPSIG00000017210)	GPATCH3 (ENSPSIG00000017160)	NR0B2 (ENSPSIG00000017134)	NUDC (ENSPSIG00000017089)	MYCL (ENSPSIG00000017084) #21	TRIT1 (ENSPSIG00000017073) #22	HPCAL4 (ENSPSIG00000017046) #26	ENSPSIG00000016917	NT5C1A (ENSPSIG00000016900) #27	HEYL (ENSPSIG00000016897) #28	PABPC4 (ENSPSIG00000016892) #29	PPIE (ENSPSIG00000016383) #25	ENSPSIG00000016344 #24
Archosauria	ANCESTRAL SPECIES	22	ENSGT00530000063881.a.b	ENSGT01030000235992	ENSGT01060000248564.a.b	ENSGT00440000035378.c	ENSGT00940000158484	ENSGT00940000158000	ENSGT00940000156197	ENSGT00490000043398	ENSGT00390000002428.a	ENSGT00910000144211.n.a	ENSGT00940000160894	ENSGT00940000156790 #18	ENSGT00390000017955.c #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214 #22	ENSGT00390000015159.a.a	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000158790 #25	ENSGT00940000177851	ENSGT00940000165717 #30	ENSGT00940000155272 #24	ENSGT00980000198642	ENSGT00940000155824.C #34	ENSGT00940000165766	ENSGT00390000002919 #35	ENSGT00950000182995.e.a.a.b	ENSGT00940000154576
Australian saltwater crocodile	MODERN SPECIES	57	CNR2 (ENSCPRG00005016552)	FUCA1 (ENSCPRG00005016551)	HMGCL (ENSCPRG00005016550)	GALE (ENSCPRG00005016501)	LYPLA2 (ENSCPRG00005016486)	ENSCPRG00005016479	ENSCPRG00005016476	RPL11 (ENSCPRG00005016471)	ENSCPRG00005016468	ENSCPRG00005016449	SLC17A4 (ENSCPRG00005016433)	PPT1 (ENSCPRG00005016429) #18	CAP1 (ENSCPRG00005016316) #19	ENSCPRG00005016264 #20	MYCL (ENSCPRG00005016254) #21	TRIT1 (ENSCPRG00005016250) #22	ENSCPRG00005016239	HPCAL4 (ENSCPRG00005016237) #26	NT5C1A (ENSCPRG00005016235) #27	HEYL (ENSCPRG00005016232) #28	PABPC4 (ENSCPRG00005015886) #29	ENSCPRG00005015789 #30	ENSCPRG00005015777 #24	ENSCPRG00005015669 #34	ENSCPRG00005015582 #34	ENSCPRG00005015575 #34	NDUFS5 (ENSCPRG00005015571) #35	AZIN2 (ENSCPRG00005015569)	AK2 (ENSCPRG00005015567)
Aves	ANCESTRAL SPECIES	28	ENSGT00530000063881.a.b	ENSGT01030000235992	ENSGT01060000248564.a.b	ENSGT00440000035378.c	ENSGT00940000158484	ENSGT00940000158000	ENSGT00940000156197	ENSGT00490000043398	ENSGT00390000002428.a	ENSGT00910000144211.n.a	ENSGT00940000160894	ENSGT00940000156790 #18	ENSGT00390000017955.c #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214 #22	ENSGT00390000015159.a.a	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000158790 #25	ENSGT00940000177851	ENSGT00940000165717 #30	ENSGT00940000155272 #24	ENSGT00980000198642	ENSGT00940000155824.C #34	ENSGT00940000165766	ENSGT00390000002919 #35	ENSGT00950000182995.e.a.a.b	ENSGT00940000154576
African ostrich	MODERN SPECIES	200															ENSSCUG00000001574	TRIT1 (ENSSCUG00000001572) #22	ENSSCUG00000001571	HPCAL4 (ENSSCUG00000001570) #26	NT5C1A (ENSSCUG00000001569) #27	HEYL (ENSSCUG00000001568) #28	PABPC4 (ENSSCUG00000001563) #29	PPIE (ENSSCUG00000001560) #25
Neognathae	ANCESTRAL SPECIES	26	ENSGT00530000063881.a.b	ENSGT01030000235992	ENSGT01060000248564.a.b	ENSGT00440000035378.c	ENSGT00940000158484	ENSGT00940000158000	ENSGT00940000156197	ENSGT00490000043398	ENSGT00390000002428.a	ENSGT00910000144211.n.a	ENSGT00940000160894	ENSGT00940000156790 #18	ENSGT00390000017955.c #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214 #22	ENSGT00390000015159.a.a	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000158790 #25	ENSGT00940000177851	ENSGT00940000165717 #30	ENSGT00940000155272 #24	ENSGT00980000198642	ENSGT00940000155824.C #34	ENSGT00940000165766	ENSGT00390000002919 #35	ENSGT00950000182995.e.a.a.b	ENSGT00940000154576
Galloanserae	ANCESTRAL SPECIES	25	ENSGT00530000063881.a.b	ENSGT01060000248564.a.b	ENSGT00440000035378.c	ENSGT00940000158484	ENSGT00940000158000	ENSGT00940000156197	ENSGT00490000043398	ENSGT00390000002428.a	ENSGT00910000144211.n.a	ENSGT00910000144211.o	ENSGT00940000160894	ENSGT00940000156790 #18	ENSGT00390000017955.c #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214 #22	ENSGT00390000015159.a.a	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000158790 #25	ENSGT00940000177851	ENSGT00940000155272 #24	ENSGT00980000198642	ENSGT00940000155824.C #34	ENSGT00940000165766	ENSGT00390000002919 #35	ENSGT00950000182995.e.a.a.b	ENSGT00940000154576	ENSGT00940000158451
Anatidae	ANCESTRAL SPECIES	21	ENSGT00530000063881.a.b	ENSGT01030000235992	ENSGT01060000248564.a.b	ENSGT00440000035378.c	ENSGT00940000158484	ENSGT00940000158000	ENSGT00940000156197	ENSGT00490000043398	ENSGT00390000002428.a	ENSGT00910000144211.o	ENSGT00940000160894	ENSGT00940000156790 #18	ENSGT00390000017955.c #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214 #22	ENSGT00390000015159.a.a	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000158790 #25	ENSGT00940000177851	ENSGT00940000155272 #24	ENSGT00980000198642	ENSGT00940000155824.C #34	ENSGT00940000165766	ENSGT00390000002919 #35	ENSGT00950000182995.e.a.a.b	ENSGT00940000154576	ENSGT00940000158451
Pink-footed goose	MODERN SPECIES	73	SRSF10 (ENSABRG00000012445)	PNRC2 (ENSABRG00000012454)	ENSABRG00000012456	FUCA1 (ENSABRG00000012475)	HMGCL (ENSABRG00000012489)	GALE (ENSABRG00000012490)	LYPLA2 (ENSABRG00000012496)	PITHD1 (ENSABRG00000012506)	ENSABRG00000012514	RPL11 (ENSABRG00000012523)	SLC17A4 (ENSABRG00000012534)	PPT1 (ENSABRG00000012542) #18	CAP1 (ENSABRG00000012608) #19	MFSD2A (ENSABRG00000012893) #20	MYCL (ENSABRG00000012969) #21	TRIT1 (ENSABRG00000012971) #22	ENSABRG00000012982	HPCAL4 (ENSABRG00000013010) #26	NT5C1A (ENSABRG00000013017) #27	HEYL (ENSABRG00000013028) #28	PABPC4 (ENSABRG00000013035) #29	PPIE (ENSABRG00000013061) #25	ENSABRG00000013064	ENSABRG00000013065 #24	MACF1 (ENSABRG00000013803) #34	NDUFS5 (ENSABRG00000020258) #35	AZIN2 (ENSABRG00000020264)	AK2 (ENSABRG00000020265)	RNF19B (ENSABRG00000020271)	TMEM54 (ENSABRG00000020276)	HPCA (ENSABRG00000020279)
Duck	MODERN SPECIES	15	SRRM1 (ENSAPLG00000002066)	NCMAP (ENSAPLG00000002541)	RCAN3 (ENSAPLG00000002545)	NIPAL3 (ENSAPLG00000002628)	STPG1 (ENSAPLG00000003159)	GRHL3 (ENSAPLG00000003161)	ENSAPLG00000003557	IL22RA1 (ENSAPLG00000003661)	MYOM3 (ENSAPLG00000003784)	ENSAPLG00000005402	SRSF10 (ENSAPLG00000005446)	PNRC2 (ENSAPLG00000000996)	PPT1 (ENSAPLG00000012514) #18	ENSAPLG00000026452	MYCL (ENSAPLG00000016475) #21	TRIT1 (ENSAPLG00000011421) #22	NT5C1A (ENSAPLG00000010540) #27	CAP1 (ENSAPLG00000011906) #19	HEYL (ENSAPLG00000028745) #28	PABPC4 (ENSAPLG00000009729) #29	PPIE (ENSAPLG00000009716) #25	ENSAPLG00000009638 #24	ENSAPLG00000026807	ENSAPLG00000018624 #34	ENSAPLG00000021254 #34	ENSAPLG00000017630 #34	ENSAPLG00000024316	NDUFS5 (ENSAPLG00000011463) #35	AZIN2 (ENSAPLG00000006932)	AK2 (ENSAPLG00000006769)	RNF19B (ENSAPLG00000006334)
Phasianidae	ANCESTRAL SPECIES	24	ENSGT00940000164147	ENSGT00940000154450	ENSGT00530000063881.a.b	ENSGT01060000248564.a.b	ENSGT00440000035378.c	ENSGT00940000158484	ENSGT00940000158000	ENSGT00940000156197	ENSGT00490000043398	ENSGT00390000002428.a	ENSGT00910000144211.n.a	ENSGT00940000156790 #18	ENSGT00390000017955.c #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214 #22	ENSGT00390000015159.a.a	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000177851	ENSGT00940000158790 #25	ENSGT00940000155272 #24	ENSGT00940000155824.C #34	ENSGT00390000002919 #35	ENSGT00950000182995.e.a.a.b	ENSGT00940000154576	ENSGT00940000158451	ENSGT00940000158110	ENSGT00390000004923.A
Japanese quail	MODERN SPECIES	15	IL22RA1 (ENSCJPG00005005149)	MYOM3 (ENSCJPG00005005124)	ENSCJPG00005005122	SRSF10 (ENSCJPG00005005121)	FUCA1 (ENSCJPG00005005110)	HMGCL (ENSCJPG00005005108)	GALE (ENSCJPG00005005105)	LYPLA2 (ENSCJPG00005005098)	PITHD1 (ENSCJPG00005005097)	ENSCJPG00005005081	RPL11 (ENSCJPG00005005075)	PPT1 (ENSCJPG00005005071) #18	CAP1 (ENSCJPG00005005065) #19	MFSD2A (ENSCJPG00005005062) #20	MYCL (ENSCJPG00005005060) #21	TRIT1 (ENSCJPG00005005054) #22	ENSCJPG00005005044	HPCAL4 (ENSCJPG00005005037) #26	NT5C1A (ENSCJPG00005005035) #27	HEYL (ENSCJPG00005005032) #28	PABPC4 (ENSCJPG00005005022) #29	ENSCJPG00005005019	PPIE (ENSCJPG00005005012) #25	ENSCJPG00005005009 #24	ENSCJPG00005003929 #34	ENSCJPG00005001547 #34	NDUFS5 (ENSCJPG00005001463) #35	AZIN2 (ENSCJPG00005001454)	AK2 (ENSCJPG00005001420)	RNF19B (ENSCJPG00005001411)	HPCA (ENSCJPG00005001401)
Phasianidae_b	ANCESTRAL SPECIES	23	ENSGT00940000164147	ENSGT00940000154450	ENSGT00530000063881.a.b	ENSGT01060000248564.a.b	ENSGT00440000035378.c	ENSGT00940000158484	ENSGT00940000158000	ENSGT00940000156197	ENSGT00490000043398	ENSGT00390000002428.a	ENSGT00910000144211.n.a	ENSGT00940000156790 #18	ENSGT00390000017955.c #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214 #22	ENSGT00390000015159.a.a	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000158790 #25	ENSGT00940000155272 #24	ENSGT00940000155824.C #34	ENSGT00390000002919 #35	ENSGT00950000182995.e.a.a.b	ENSGT00940000154576	ENSGT00940000158451	ENSGT00940000158110	ENSGT00390000004923.A	ENSGT00940000156949
Chicken	MODERN SPECIES	15	LBFABP (ENSGALG00010015711)	SRSF10 (ENSGALG00010015617)	PNRC2 (ENSGALG00010015555)	CNR2 (ENSGALG00010015524)	FUCA1 (ENSGALG00010015508)	HMGCL (ENSGALG00010015430)	GALE (ENSGALG00010015299)	LYPLA2 (ENSGALG00010015193)	PITHD1 (ENSGALG00010015180)	TCEB3 (ENSGALG00010015136)	RPL11 (ENSGALG00010015127)	PPT1 (ENSGALG00010015109) #18	CAP1 (ENSGALG00010015101) #19	MFSD2A (ENSGALG00010015097) #20	MYCL (ENSGALG00010016453) #21	TRIT1 (ENSGALG00010016534) #22	ENSGALG00010016479	HPCAL4 (ENSGALG00010016461) #26	NT5C1A (ENSGALG00010018322) #27	HEYL (ENSGALG00010018289) #28	PABPC4 (ENSGALG00010017826) #29	PPIE (ENSGALG00010017823) #25	ENSGALG00010017821 #24	MACF1 (ENSGALG00010017795) #34	NDUFS5 (ENSGALG00010017738) #35	AZIN2 (ENSGALG00010017727)	AK2 (ENSGALG00010017707)	RNF19B (ENSGALG00010017699)	HPCA (ENSGALG00010017697)	FNDC5 (ENSGALG00010017695)	YARS (ENSGALG00010017678)
Turkey	MODERN SPECIES	17							ENSMGAG00000019535 #34	ENSMGAG00000022178 #34	ENSMGAG00000019928	ENSMGAG00000018196	ENSMGAG00000005391 #24	ENSMGAG00000005408 #29	ENSMGAG00000019265 #28	ENSMGAG00000005458 #27	ENSMGAG00000005485	ENSMGAG00000005516 #22	ENSMGAG00000005587 #21	ENSMGAG00000005594 #20	ENSMGAG00000005626 #19	ENSMGAG00000005521 #18	ENSMGAG00000005572	ENSMGAG00000005606	ENSMGAG00000022230	ENSMGAG00000005676	ENSMGAG00000005686	ENSMGAG00000005732	CNR2 (ENSMGAG00000019272)	ENSMGAG00000022163	ENSMGAG00000015726	ENSMGAG00000018128	MYOM3 (ENSMGAG00000005790)
Neognathae_b	ANCESTRAL SPECIES	26	ENSGT01030000235992	ENSGT01060000248564.a.b	ENSGT00440000035378.c	ENSGT00940000158484	ENSGT00940000158000	ENSGT00940000156197	ENSGT00490000043398	ENSGT00390000002428.a	ENSGT00910000144211.o	ENSGT00910000144211.n.a	ENSGT00940000160894	ENSGT00940000156790 #18	ENSGT00390000017955.c #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214 #22	ENSGT00390000015159.a.a	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000165717 #30	ENSGT00940000177851	ENSGT00940000158790 #25	ENSGT00940000155272 #24	ENSGT00940000155824.C #34	ENSGT00940000165766	ENSGT00390000002919 #35	ENSGT00950000182995.e.a.a.b	ENSGT00940000154576	ENSGT00940000158451
Neognathae_c	ANCESTRAL SPECIES	31	ENSGT00530000063881.a.b	ENSGT01030000235992	ENSGT01060000248564.a.b	ENSGT00440000035378.c	ENSGT00940000158484	ENSGT00940000158000	ENSGT00940000156197	ENSGT00490000043398	ENSGT00390000002428.a	ENSGT00910000144211.n.a	ENSGT00940000160894	ENSGT00940000156790 #18	ENSGT00390000017955.c #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214 #22	ENSGT00390000015159.a.a	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000158790 #25	ENSGT00940000155272 #24	ENSGT00940000155824.C #34	ENSGT00940000165766	ENSGT00390000002919 #35	ENSGT00950000182995.e.a.a.b	ENSGT00940000154576	ENSGT00940000158451	ENSGT00390000004700.a	ENSGT00940000158110
Golden eagle	MODERN SPECIES	7	ENSACCG00020008337	CNR2 (ENSACCG00020008327)	FUCA1 (ENSACCG00020008316)	HMGCL (ENSACCG00020008306)	GALE (ENSACCG00020008267)	LYPLA2 (ENSACCG00020008242)	PITHD1 (ENSACCG00020008228)	ENSACCG00020008210	ENSACCG00020008198	RPL11 (ENSACCG00020016745)	SLC17A4 (ENSACCG00020016742)	PPT1 (ENSACCG00020016739) #18	CAP1 (ENSACCG00020016734) #19	MFSD2A (ENSACCG00020016720) #20	MYCL (ENSACCG00020016702) #21	TRIT1 (ENSACCG00020016696) #22	ENSACCG00020016692	HPCAL4 (ENSACCG00020016687) #26	NT5C1A (ENSACCG00020016683) #27	HEYL (ENSACCG00020016681) #28	PABPC4 (ENSACCG00020016670) #29	PPIE (ENSACCG00020016665) #25	ENSACCG00020016662 #24	MACF1 (ENSACCG00020014189) #34	NDUFS5 (ENSACCG00020008974) #35	AZIN2 (ENSACCG00020008960)	AK2 (ENSACCG00020008931)	RNF19B (ENSACCG00020008872)	TMEM54 (ENSACCG00020008785)	HPCA (ENSACCG00020008769)	FNDC5 (ENSACCG00020008751)
Kakapo	MODERN SPECIES	6	YARS1 (ENSSHBG00005018851)	FNDC5 (ENSSHBG00005018843)	ENSSHBG00005018833	FUCA1 (ENSSHBG00005018821)	HMGCL (ENSSHBG00005018817)	GALE (ENSSHBG00005018810)	LYPLA2 (ENSSHBG00005018807)	PITHD1 (ENSSHBG00005018805)	ENSSHBG00005018801	ENSSHBG00005018797	RPL11 (ENSSHBG00005018793)	PPT1 (ENSSHBG00005018788) #18	CAP1 (ENSSHBG00005018785) #19	MFSD2A (ENSSHBG00005018777) #20	MYCL (ENSSHBG00005018769) #21	TRIT1 (ENSSHBG00005018762) #22	ENSSHBG00005018756	HPCAL4 (ENSSHBG00005018749) #26	NT5C1A (ENSSHBG00005018743) #27	HEYL (ENSSHBG00005018739) #28	PABPC4 (ENSSHBG00005018728) #29	ENSSHBG00005018719 #30	ENSSHBG00005018713 #24	ENSSHBG00005018704	MACF1 (ENSSHBG00005008256) #34	NDUFS5 (ENSSHBG00005006581) #35	AZIN2 (ENSSHBG00005006553)	AK2 (ENSSHBG00005006521)	RNF19B (ENSSHBG00005006496)	ENSSHBG00005006470	ZMPSTE24 (ENSSHBG00005006439) #15
Passeriformes	ANCESTRAL SPECIES	23	ENSGT00940000154450	ENSGT00530000063881.a.b	ENSGT01030000235992	ENSGT01060000248564.a.b	ENSGT00440000035378.c	ENSGT00940000158484	ENSGT00940000158000	ENSGT00940000156197	ENSGT00490000043398	ENSGT00390000002428.a	ENSGT00910000144211.o	ENSGT00940000156790 #18	ENSGT00390000017955.c #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214 #22	ENSGT00390000015159.a.a	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000165717 #30	ENSGT00940000177851	ENSGT00940000158790 #25	ENSGT00940000155272 #24	ENSGT00940000155824.C #34	ENSGT00390000002919 #35	ENSGT00950000182995.e.a.a.b	ENSGT00940000154576	ENSGT00940000158451	ENSGT00390000004700.a
Great tit	MODERN SPECIES	15	ENSPMJG00000000603	SRSF10 (ENSPMJG00000000613)	PNRC2 (ENSPMJG00000000625)	CNR2 (ENSPMJG00000000631)	FUCA1 (ENSPMJG00000000634)	HMGCL (ENSPMJG00000000643)	GALE (ENSPMJG00000000656)	LYPLA2 (ENSPMJG00000000692)	PITHD1 (ENSPMJG00000000708)	ENSPMJG00000000713	RPL11 (ENSPMJG00000000731)	PPT1 (ENSPMJG00000000739) #18	CAP1 (ENSPMJG00000000763) #19	MFSD2A (ENSPMJG00000000775) #20	MYCL (ENSPMJG00000000784) #21	TRIT1 (ENSPMJG00000000792) #22	ENSPMJG00000000803	HPCAL4 (ENSPMJG00000000816) #26	NT5C1A (ENSPMJG00000000821) #27	HEYL (ENSPMJG00000000826) #28	PABPC4 (ENSPMJG00000000829) #29	PPIE (ENSPMJG00000000851) #25	ENSPMJG00000000857 #24	MACF1 (ENSPMJG00000001187) #34	ENSPMJG00000005464 #34	NDUFS5 (ENSPMJG00000005985) #35	AZIN2 (ENSPMJG00000005987)	AK2 (ENSPMJG00000006027)	RNF19B (ENSPMJG00000006032)	TMEM54 (ENSPMJG00000006042)	HPCA (ENSPMJG00000006043)
Passeriformes_d	DUPLICATION
Passeriformes_d	ANCESTRAL SPECIES																	ENSGT00390000015214.c #22
Flycatcher	MODERN SPECIES	15	PNRC2 (ENSFALG00000024462)	SRSF10 (ENSFALG00000000505)	CNR2 (ENSFALG00000014254)	FUCA1 (ENSFALG00000000508)	HMGCL (ENSFALG00000000512)	GALE (ENSFALG00000000514)	LYPLA2 (ENSFALG00000028382)	PITHD1 (ENSFALG00000000518)	ENSFALG00000000519	RPL11 (ENSFALG00000000520)	PPT1 (ENSFALG00000000522) #18	CAP1 (ENSFALG00000000523) #19	MFSD2A (ENSFALG00000000524) #20	MYCL (ENSFALG00000000526) #21	ENSFALG00000027711 #22	ENSFALG00000028578 #22	ENSFALG00000000537	HPCAL4 (ENSFALG00000000538) #26	NT5C1A (ENSFALG00000000539) #27	HEYL (ENSFALG00000000542) #28	PABPC4 (ENSFALG00000000543) #29	ENSFALG00000000545 #25	ENSFALG00000025395 #24	MACF1 (ENSFALG00000000559) #34	ENSFALG00000024349 #35	ENSFALG00000000579 #35	AZIN2 (ENSFALG00000000581)	AK2 (ENSFALG00000000582)	RNF19B (ENSFALG00000000583)	TMEM54 (ENSFALG00000000585)	HPCA (ENSFALG00000026043)
Passeriformes_d	ANCESTRAL SPECIES	23	ENSGT00940000154450	ENSGT00530000063881.a.b	ENSGT01030000235992	ENSGT01060000248564.a.b	ENSGT00440000035378.c	ENSGT00940000158484	ENSGT00940000158000	ENSGT00940000156197	ENSGT00490000043398	ENSGT00390000002428.a	ENSGT00910000144211.o	ENSGT00940000156790 #18	ENSGT00390000017955.c #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214.d #22	ENSGT00390000015159.a.a	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000165717 #30	ENSGT00940000177851	ENSGT00940000158790 #25	ENSGT00940000155272 #24	ENSGT00940000155824.C #34	ENSGT00390000002919 #35	ENSGT00950000182995.e.a.a.b	ENSGT00940000154576	ENSGT00940000158451	ENSGT00390000004700.a
Passeriformes_g	ANCESTRAL SPECIES	22	ENSGT00940000154450	ENSGT00530000063881.a.b	ENSGT01030000235992	ENSGT01060000248564.a.b	ENSGT00440000035378.c	ENSGT00940000158484	ENSGT00940000158000	ENSGT00940000156197	ENSGT00490000043398	ENSGT00390000002428.a	ENSGT00910000144211.o	ENSGT00940000156790 #18	ENSGT00390000017955.c #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214.d #22	ENSGT00390000015159.a.a	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000165717 #30	ENSGT00940000177851	ENSGT00940000158790 #25	ENSGT00940000155272 #24	ENSGT00940000155824.C #34	ENSGT00390000002919 #35	ENSGT00950000182995.e.a.a.b	ENSGT00940000154576	ENSGT00940000158451	ENSGT00390000004700.a
Passeroidea	ANCESTRAL SPECIES	22	ENSGT00940000164147	ENSGT00940000154450	ENSGT00530000063881.a.b	ENSGT01060000248564.a.b	ENSGT00440000035378.c	ENSGT00940000158484	ENSGT00940000158000	ENSGT00940000156197	ENSGT00490000043398	ENSGT00390000002428.a	ENSGT00910000144211.o	ENSGT00940000156790 #18	ENSGT00390000017955.c #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214.d #22	ENSGT00390000015159.a.a	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000165717 #30	ENSGT00940000177851	ENSGT00940000158790 #25	ENSGT00940000155272 #24	ENSGT00940000155824.C #34	ENSGT00390000002919 #35	ENSGT00950000182995.e.a.a.b	ENSGT00940000154576	ENSGT00940000158451	ENSGT00390000004700.a
Common canary	MODERN SPECIES	65	ENSSCAG00000006894	SRSF10 (ENSSCAG00000006889)	PNRC2 (ENSSCAG00000006887)	CNR2 (ENSSCAG00000006884)	FUCA1 (ENSSCAG00000006878)	HMGCL (ENSSCAG00000006869)	GALE (ENSSCAG00000006860)	LYPLA2 (ENSSCAG00000006857)	PITHD1 (ENSSCAG00000006853)	ENSSCAG00000006847	RPL11 (ENSSCAG00000006846)	PPT1 (ENSSCAG00000006841) #18	CAP1 (ENSSCAG00000006838) #19	MFSD2A (ENSSCAG00000006809) #20	MYCL (ENSSCAG00000006801) #21	TRIT1 (ENSSCAG00000006796) #22	ENSSCAG00000006789	HPCAL4 (ENSSCAG00000006786) #26	NT5C1A (ENSSCAG00000006780) #27	HEYL (ENSSCAG00000006771) #28	PABPC4 (ENSSCAG00000006756) #29	ENSSCAG00000006725 #30	ENSSCAG00000006707 #24	ENSSCAG00000005783 #34	ENSSCAG00000005189 #34	NDUFS5 (ENSSCAG00000005114) #35	AZIN2 (ENSSCAG00000005110)	AK2 (ENSSCAG00000005103)	RNF19B (ENSSCAG00000005094)	HPCA (ENSSCAG00000005093)	FNDC5 (ENSSCAG00000005089)
Zebra finch	MODERN SPECIES	16	SRSF10 (ENSTGUG00000024024)	PNRC2 (ENSTGUG00000029009)	CNR2 (ENSTGUG00000001188)	FUCA1 (ENSTGUG00000001190)	HMGCL (ENSTGUG00000001195)	GALE (ENSTGUG00000023286)	LYPLA2 (ENSTGUG00000001198)	PITHD1 (ENSTGUG00000001201)	ENSTGUG00000001205	RPL11 (ENSTGUG00000001210)	PPT1 (ENSTGUG00000001213) #18	CAP1 (ENSTGUG00000001218) #19	ENSTGUG00000023287	MFSD2A (ENSTGUG00000001225) #20	MYCL (ENSTGUG00000024187) #21	TRIT1 (ENSTGUG00000001242) #22	ENSTGUG00000001249	NT5C1A (ENSTGUG00000001264) #27	HEYL (ENSTGUG00000025448) #28	PABPC4 (ENSTGUG00000001266) #29	ENSTGUG00000020766	PPIE (ENSTGUG00000001276) #25	ENSTGUG00000028464 #24	MACF1 (ENSTGUG00000001293) #34	NDUFS5 (ENSTGUG00000025826) #35	AZIN2 (ENSTGUG00000001325)	AK2 (ENSTGUG00000026076)	RNF19B (ENSTGUG00000001337)	TMEM54 (ENSTGUG00000024499)	HPCA (ENSTGUG00000017350)	FNDC5 (ENSTGUG00000001341)
Medium ground finch	MODERN SPECIES	139	ENSGFOG00000008022	SRSF10 (ENSGFOG00000008029)	PNRC2 (ENSGFOG00000008047)	ENSGFOG00000008050	CNR2 (ENSGFOG00000008053)	FUCA1 (ENSGFOG00000008062)	HMGCL (ENSGFOG00000008076)	GALE (ENSGFOG00000008100)	LYPLA2 (ENSGFOG00000008108)	PITHD1 (ENSGFOG00000008116)	ENSGFOG00000008122	RPL11 (ENSGFOG00000008137)	PPT1 (ENSGFOG00000008143) #18	CAP1 (ENSGFOG00000008167) #19	MFSD2A (ENSGFOG00000008188) #20	TRIT1 (ENSGFOG00000008199) #22	ENSGFOG00000008210	HPCAL4 (ENSGFOG00000008225) #26	NT5C1A (ENSGFOG00000008231) #27	HEYL (ENSGFOG00000008241) #28	PABPC4 (ENSGFOG00000008247) #29	PPIE (ENSGFOG00000008269) #25	ENSGFOG00000008303 #24	MACF1 (ENSGFOG00000004176) #34	ENSGFOG00000014220	ENSGFOG00000014222	AZIN2 (ENSGFOG00000014223)	AK2 (ENSGFOG00000014227)	RNF19B (ENSGFOG00000014237)	TMEM54 (ENSGFOG00000014257)	HPCA (ENSGFOG00000014259)
Flycatcher	MODERN SPECIES	15	ENSFALG00000000503	PNRC2 (ENSFALG00000024462)	SRSF10 (ENSFALG00000000505)	CNR2 (ENSFALG00000014254)	FUCA1 (ENSFALG00000000508)	HMGCL (ENSFALG00000000512)	GALE (ENSFALG00000000514)	LYPLA2 (ENSFALG00000028382)	PITHD1 (ENSFALG00000000518)	ENSFALG00000000519	RPL11 (ENSFALG00000000520)	PPT1 (ENSFALG00000000522) #18	CAP1 (ENSFALG00000000523) #19	MFSD2A (ENSFALG00000000524) #20	MYCL (ENSFALG00000000526) #21	ENSFALG00000027711 #22	ENSFALG00000028578 #22	ENSFALG00000000537	HPCAL4 (ENSFALG00000000538) #26	NT5C1A (ENSFALG00000000539) #27	HEYL (ENSFALG00000000542) #28	PABPC4 (ENSFALG00000000543) #29	ENSFALG00000000545 #25	ENSFALG00000025395 #24	MACF1 (ENSFALG00000000559) #34	ENSFALG00000024349 #35	ENSFALG00000000579 #35	AZIN2 (ENSFALG00000000581)	AK2 (ENSFALG00000000582)	RNF19B (ENSFALG00000000583)	TMEM54 (ENSFALG00000000585)
Lepidosauria	ANCESTRAL SPECIES	18	ENSGT01030000235992	ENSGT01060000248564.a.b	ENSGT00440000035378.c	ENSGT00940000158484	ENSGT00940000158000	ENSGT00940000156197	ENSGT00490000043398	ENSGT00390000002428.a	ENSGT00940000166197	ENSGT00910000144211.n.a	ENSGT00940000156790 #18	ENSGT00390000017955.c #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00940000178962	ENSGT00390000015214 #22	ENSGT00390000015159.a.a	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000158790 #25	ENSGT00940000177851	ENSGT00940000155272 #24	ENSGT00940000155824.C #34	ENSGT00940000165766	ENSGT00390000002919 #35	ENSGT00950000182995.e.a.a.b	ENSGT00940000154576	ENSGT00940000158451	ENSGT00390000004700.a
tuatara	MODERN SPECIES	1719							ENSSPUG00000003655	ENSSPUG00000003644	ENSSPUG00000003622	ENSSPUG00000003612 #18	ENSSPUG00000003591 #18	CAP1 (ENSSPUG00000003576) #19	MFSD2A (ENSSPUG00000003562) #20	MYCL (ENSSPUG00000003545) #21	ENSSPUG00000003530	TRIT1 (ENSSPUG00000003472) #22	ENSSPUG00000003365	HPCAL4 (ENSSPUG00000003336) #26	NT5C1A (ENSSPUG00000003317) #27	HEYL (ENSSPUG00000003299) #28	PABPC4 (ENSSPUG00000003204) #29	PPIE (ENSSPUG00000003147) #25	ENSSPUG00000003125 #24
Episquamata	ANCESTRAL SPECIES	7	ENSGT00390000015257	ENSGT00940000155107.a.a	ENSGT00940000159465	ENSGT00940000158915	ENSGT00390000001737	ENSGT00940000166129	ENSGT00390000004808	ENSGT00510000048364	ENSGT00950000182986.b	ENSGT00940000154096.b.b.b.b.a	ENSGT00990000210150	ENSGT00940000160627	ENSGT00950000183163.a.a	ENSGT00940000158613 #21	ENSGT00940000178962	ENSGT00390000015214 #22	ENSGT00390000015159.a.a	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000158790 #25	ENSGT00940000177851	ENSGT00940000155272 #24	ENSGT00940000155824.C #34	ENSGT00940000165766	ENSGT00390000002919 #35	ENSGT00950000182995.e.a.a.b	ENSGT00940000154576	ENSGT00940000158451	ENSGT00390000004700.a
Toxicofera	ANCESTRAL SPECIES	29	ENSGT00390000003012	ENSGT00940000156553	ENSGT00390000015257	ENSGT00940000155107.a.a	ENSGT00940000159465	ENSGT00940000158915	ENSGT00390000001737	ENSGT00390000004808	ENSGT00510000048364	ENSGT00950000182986.b	ENSGT00940000154096.b.b.b.b.a	ENSGT00990000210150	ENSGT00950000183163.a.a	ENSGT00940000158613 #21	ENSGT00940000178962	ENSGT00390000015214 #22	ENSGT00390000015159.a.a	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000154788 #29	ENSGT00940000158790 #25	ENSGT00940000155272 #24	ENSGT00940000155824.C #34	ENSGT00940000165766	ENSGT00390000002919 #35	ENSGT00950000182995.e.a.a.b	ENSGT00940000154576	ENSGT00940000158451	ENSGT00390000004700.a	ENSGT00940000158110	ENSGT00390000004923.A
Elapidae	ANCESTRAL SPECIES	9	ENSGT00530000063402.a	ENSGT00950000183028.a.b	ENSGT00390000005813	ENSGT00940000165372	ENSGT00950000183031.A.a.a.je.a	ENSGT00390000017974	ENSGT00940000159442 #37	ENSGT00390000001737	ENSGT00390000004808	ENSGT00510000048364	ENSGT00950000182986.b	ENSGT00940000154096.b.b.b.b.a	ENSGT00950000183163.a.a	ENSGT00940000158613 #21	ENSGT00940000178962	ENSGT00390000015214 #22	ENSGT00390000015159.a.a	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000154788 #29	ENSGT00940000158790 #25	ENSGT00940000155272 #24	ENSGT00940000155824.C #34	ENSGT00940000165766	ENSGT00390000002919 #35	ENSGT00950000182995.e.a.a.b	ENSGT00940000154576	ENSGT00940000158451	ENSGT00390000004700.a	ENSGT00940000158110	ENSGT00390000004923.A
Indian cobra	DUPLICATION
Indian cobra	MODERN SPECIES	11	SF3A3 (ENSNNAG00000003723)	FHL3 (ENSNNAG00000003897)	UTP11 (ENSNNAG00000003931)	ENSNNAG00000003972	ENSNNAG00000003998	MYCBP (ENSNNAG00000004022)	RHBDL2 (ENSNNAG00000004066) #37	ENSNNAG00000004155	MRPS15 (ENSNNAG00000004174)	OSCP1 (ENSNNAG00000004190)	LSM10 (ENSNNAG00000004232)	STK40 (ENSNNAG00000004259)	EVA1B (ENSNNAG00000004341)	THRAP3 (ENSNNAG00000004370)	MYCL (ENSNNAG00000004422) #21	ENSNNAG00000004432 #22	ENSNNAG00000004445 #22	ENSNNAG00000004455	ENSNNAG00000004491	NT5C1A (ENSNNAG00000004580) #27	PABPC4 (ENSNNAG00000004677) #29	PPIE (ENSNNAG00000004727) #25	ENSNNAG00000004759 #24	NDUFS5 (ENSNNAG00000017166) #35	AZIN2 (ENSNNAG00000017171)	AK2 (ENSNNAG00000017179)	RNF19B (ENSNNAG00000017199)	ENSNNAG00000017227	FNDC5 (ENSNNAG00000017239)	YARS1 (ENSNNAG00000017253)	SYNC (ENSNNAG00000017271)
Indian cobra	MODERN SPECIES	11	FHL3 (ENSNNAG00000003897)	UTP11 (ENSNNAG00000003931)	ENSNNAG00000003972	ENSNNAG00000003998	MYCBP (ENSNNAG00000004022)	RHBDL2 (ENSNNAG00000004066) #37	ENSNNAG00000004155	MRPS15 (ENSNNAG00000004174)	OSCP1 (ENSNNAG00000004190)	LSM10 (ENSNNAG00000004232)	STK40 (ENSNNAG00000004259)	EVA1B (ENSNNAG00000004341)	THRAP3 (ENSNNAG00000004370)	MYCL (ENSNNAG00000004422) #21	ENSNNAG00000004432 #22	ENSNNAG00000004445 #22	ENSNNAG00000004455	ENSNNAG00000004491	NT5C1A (ENSNNAG00000004580) #27	PABPC4 (ENSNNAG00000004677) #29	PPIE (ENSNNAG00000004727) #25	ENSNNAG00000004759 #24	NDUFS5 (ENSNNAG00000017166) #35	AZIN2 (ENSNNAG00000017171)	AK2 (ENSNNAG00000017179)	RNF19B (ENSNNAG00000017199)	ENSNNAG00000017227	FNDC5 (ENSNNAG00000017239)	YARS1 (ENSNNAG00000017253)	SYNC (ENSNNAG00000017271)	RBBP4 (ENSNNAG00000017312)
Elapidae_a	DUPLICATION
Elapidae_a	ANCESTRAL SPECIES	15	ENSGT00940000157291.b	ENSGT00530000063402.a	ENSGT00950000183028.a.b	ENSGT00390000005813	ENSGT00940000165372	ENSGT00950000183031.A.a.a.je.a	ENSGT00390000017974	ENSGT00940000159442 #37	ENSGT00390000001737	ENSGT00390000004808	ENSGT00510000048364	ENSGT00950000182986.b	ENSGT00940000154096.b.b.b.b.a	ENSGT00950000183163.a.a	ENSGT00940000158613 #21	ENSGT00390000015214.g #22	ENSGT00390000015159.a.a	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000154788 #29	ENSGT00940000158790 #25	ENSGT00940000155272 #24	ENSGT00940000155824.C #34	ENSGT00940000165766	ENSGT00390000002919 #35	ENSGT00950000182995.e.a.a.b	ENSGT00940000154576	ENSGT00940000158451	ENSGT00390000004700.a	ENSGT00940000158110	ENSGT00390000004923.A
Acanthophiinae	ANCESTRAL SPECIES	25	ENSGT00940000157291.a	ENSGT00530000063402.a	ENSGT00950000183028.a.b	ENSGT00390000005813	ENSGT00940000165372	ENSGT00950000183031.A.a.a.je.a	ENSGT00390000017974	ENSGT00940000159442 #37	ENSGT00390000001737	ENSGT00390000004808	ENSGT00510000048364	ENSGT00950000182986.b	ENSGT00940000154096.b.b.b.b.a	ENSGT00950000183163.a.a	ENSGT00940000158613 #21	ENSGT00390000015214.g #22	ENSGT00390000015159.a.a	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000154788 #29	ENSGT00940000158790 #25	ENSGT00940000155272 #24	ENSGT00940000155824.C #34	ENSGT00940000165766	ENSGT00390000002919 #35	ENSGT00950000182995.e.a.a.b	ENSGT00940000154576	ENSGT00940000158451	ENSGT00390000004700.a	ENSGT00940000158110	ENSGT00390000004923.A
Eastern brown snake	MODERN SPECIES	19	FHL3 (ENSPTXG00000018959)	UTP11 (ENSPTXG00000018958)	ENSPTXG00000018957	RRAGC (ENSPTXG00000018956)	MYCBP (ENSPTXG00000018955)	RHBDL2 (ENSPTXG00000018954) #37	MRPS15 (ENSPTXG00000018953)	OSCP1 (ENSPTXG00000018952)	LSM10 (ENSPTXG00000018951)	STK40 (ENSPTXG00000018950)	EVA1B (ENSPTXG00000018949)	THRAP3 (ENSPTXG00000018948)	MYCL (ENSPTXG00000018947) #21	ENSPTXG00000018946	ENSPTXG00000018945 #22	ENSPTXG00000018944 #22	ENSPTXG00000018943	HPCAL4 (ENSPTXG00000018942) #26	NT5C1A (ENSPTXG00000018941) #27	PABPC4 (ENSPTXG00000018939) #29	PPIE (ENSPTXG00000018938) #25	ENSPTXG00000018937 #24	MACF1 (ENSPTXG00000001801) #34	NDUFS5 (ENSPTXG00000000796) #35	AZIN2 (ENSPTXG00000000420)	AK2 (ENSPTXG00000000403)	RNF19B (ENSPTXG00000000389)	TMEM54 (ENSPTXG00000000372)	HPCA (ENSPTXG00000000114)	FNDC5 (ENSPTXG00000004279)	YARS1 (ENSPTXG00000004274)
Mainland tiger snake	MODERN SPECIES	56	YRDC (ENSNSUG00000000168)	MTF1 (ENSNSUG00000000129)	SF3A3 (ENSNSUG00000000087)	FHL3 (ENSNSUG00000000073)	UTP11 (ENSNSUG00000000010)	ENSNSUG00000012252	RHBDL2 (ENSNSUG00000012251) #37	MYCBP (ENSNSUG00000012250)	MRPS15 (ENSNSUG00000012248)	OSCP1 (ENSNSUG00000012246)	LSM10 (ENSNSUG00000012245)	STK40 (ENSNSUG00000012244)	EVA1B (ENSNSUG00000012243)	THRAP3 (ENSNSUG00000012242)	MYCL (ENSNSUG00000012241) #21	TRIT1 (ENSNSUG00000012240) #22	ENSNSUG00000012239	HPCAL4 (ENSNSUG00000012237) #26	NT5C1A (ENSNSUG00000012236) #27	PABPC4 (ENSNSUG00000012165) #29	PPIE (ENSNSUG00000012164) #25	ENSNSUG00000012163 #24	ENSNSUG00000012161 #34	ENSNSUG00000012154 #34	ENSNSUG00000012152 #34	ENSNSUG00000012151	NDUFS5 (ENSNSUG00000012150) #35	AZIN2 (ENSNSUG00000012144)	AK2 (ENSNSUG00000012143)	RNF19B (ENSNSUG00000012141)	TMEM54 (ENSNSUG00000012139)
Elapidae_a	ANCESTRAL SPECIES	254															ENSGT00940000178962	ENSGT00390000015214.h #22	ENSGT01010000230295
Acanthophiinae	ANCESTRAL SPECIES	310															ENSGT00940000178962	ENSGT00390000015214.h #22
Eastern brown snake	MODERN SPECIES	19	SF3A3 (ENSPTXG00000018960)	FHL3 (ENSPTXG00000018959)	UTP11 (ENSPTXG00000018958)	ENSPTXG00000018957	RRAGC (ENSPTXG00000018956)	MYCBP (ENSPTXG00000018955)	RHBDL2 (ENSPTXG00000018954) #37	MRPS15 (ENSPTXG00000018953)	OSCP1 (ENSPTXG00000018952)	LSM10 (ENSPTXG00000018951)	STK40 (ENSPTXG00000018950)	EVA1B (ENSPTXG00000018949)	THRAP3 (ENSPTXG00000018948)	MYCL (ENSPTXG00000018947) #21	ENSPTXG00000018946	ENSPTXG00000018945 #22	ENSPTXG00000018944 #22	ENSPTXG00000018943	HPCAL4 (ENSPTXG00000018942) #26	NT5C1A (ENSPTXG00000018941) #27	PABPC4 (ENSPTXG00000018939) #29	PPIE (ENSPTXG00000018938) #25	ENSPTXG00000018937 #24	MACF1 (ENSPTXG00000001801) #34	NDUFS5 (ENSPTXG00000000796) #35	AZIN2 (ENSPTXG00000000420)	AK2 (ENSPTXG00000000403)	RNF19B (ENSPTXG00000000389)	TMEM54 (ENSPTXG00000000372)	HPCA (ENSPTXG00000000114)	FNDC5 (ENSPTXG00000004279)
Blue-lipped sea krait	MODERN SPECIES	9226																TRIT1 (ENSLLTG00000015976) #22	ENSLLTG00000015974
Lizard	MODERN SPECIES	1093												ENSACAG00000002145	ENSACAG00000045385	ENSACAG00000002180	ENSACAG00000025431 #21	ENSACAG00000002280 #22	ENSACAG00000002404	HPCAL4 (ENSACAG00000002443) #26	NT5C1A (ENSACAG00000002502) #27	PABPC4 (ENSACAG00000002544) #29	ENSACAG00000002688 #25	ENSACAG00000002816 #24	ENSACAG00000002949 #34	ENSACAG00000003326 #34	ENSACAG00000036031 #34	NDUFS5 (ENSACAG00000040066) #35	azin2 (ENSACAG00000003415)
Laterata	ANCESTRAL SPECIES	38	ENSGT00940000160103	ENSGT00940000162194	ENSGT00940000154383	ENSGT00940000155718	ENSGT00390000018895.b	ENSGT00730000111349	ENSGT00940000154301	ENSGT00940000161163	ENSGT00940000159693	ENSGT00940000163547	ENSGT00940000161371	ENSGT00940000165828	ENSGT00940000160627	ENSGT00950000183163.a.a	ENSGT00940000158613 #21	ENSGT00390000015214 #22	ENSGT00390000015159.a.a	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000161351 #28	ENSGT00940000154788 #29	ENSGT00940000158790 #25	ENSGT00940000177851	ENSGT00940000155272 #24	ENSGT00940000155824.C #34	ENSGT00390000002919 #35	ENSGT00950000182995.e.a.a.b	ENSGT00940000154576	ENSGT00940000158451	ENSGT00390000004700.a	ENSGT00940000158110
Common wall lizard	MODERN SPECIES	16	ADGRB2 (ENSPMRG00000008643)	ENSPMRG00000009480	PTP4A2 (ENSPMRG00000009551)	KHDRBS1 (ENSPMRG00000009579)	TMEM39B (ENSPMRG00000009596)	MARCKSL1 (ENSPMRG00000009613)	HDAC1 (ENSPMRG00000009621)	LCK (ENSPMRG00000009632)	FAM167B (ENSPMRG00000009642)	ENSPMRG00000009648	EIF3I (ENSPMRG00000009668)	ENSPMRG00000009683	ENSPMRG00000009697	THRAP3 (ENSPMRG00000009720)	ENSPMRG00000009749 #21	TRIT1 (ENSPMRG00000009777) #22	ENSPMRG00000009813	HPCAL4 (ENSPMRG00000009826) #26	NT5C1A (ENSPMRG00000009834) #27	HEYL (ENSPMRG00000009840) #28	PABPC4 (ENSPMRG00000009846) #29	PPIE (ENSPMRG00000009863) #25	ENSPMRG00000009872 #24	ENSPMRG00000009879	MACF1 (ENSPMRG00000011150) #34	NDUFS5 (ENSPMRG00000017266) #35	AZIN2 (ENSPMRG00000017278)	AK2 (ENSPMRG00000017305)	RNF19B (ENSPMRG00000017320)	TMEM54 (ENSPMRG00000017376)	HPCA (ENSPMRG00000017381)
Argentine black and white tegu	DUPLICATION
Argentine black and white tegu	MODERN SPECIES	82	PTP4A2 (ENSSMRG00000011968)	KHDRBS1 (ENSSMRG00000011971)	TMEM39B (ENSSMRG00000011975)	ENSSMRG00000011976	HDAC1 (ENSSMRG00000011979)	MARCKSL1 (ENSSMRG00000011980)	LCK (ENSSMRG00000011981)	FAM167B (ENSSMRG00000012033)	ENSSMRG00000012034	EIF3I (ENSSMRG00000012035)	ENSSMRG00000012039	DCDC2B (ENSSMRG00000012055)	ENSSMRG00000012059	THRAP3 (ENSSMRG00000012062)	MYCL (ENSSMRG00000012064) #21	ENSSMRG00000012067 #22	ENSSMRG00000012068 #22	ENSSMRG00000012070	HPCAL4 (ENSSMRG00000012072) #26	NT5C1A (ENSSMRG00000012074) #27	PABPC4 (ENSSMRG00000012076) #29	PPIE (ENSSMRG00000012079) #25	ENSSMRG00000012080	ENSSMRG00000012085 #24	MACF1 (ENSSMRG00000012094) #34	ENSSMRG00000013690 #34	NDUFS5 (ENSSMRG00000015911) #35	AZIN2 (ENSSMRG00000015912)	AK2 (ENSSMRG00000015914)	RNF19B (ENSSMRG00000015915)	TMEM54 (ENSSMRG00000015916)
Argentine black and white tegu	MODERN SPECIES	82	KHDRBS1 (ENSSMRG00000011971)	TMEM39B (ENSSMRG00000011975)	ENSSMRG00000011976	HDAC1 (ENSSMRG00000011979)	MARCKSL1 (ENSSMRG00000011980)	LCK (ENSSMRG00000011981)	FAM167B (ENSSMRG00000012033)	ENSSMRG00000012034	EIF3I (ENSSMRG00000012035)	ENSSMRG00000012039	DCDC2B (ENSSMRG00000012055)	ENSSMRG00000012059	THRAP3 (ENSSMRG00000012062)	MYCL (ENSSMRG00000012064) #21	ENSSMRG00000012067 #22	ENSSMRG00000012068 #22	ENSSMRG00000012070	HPCAL4 (ENSSMRG00000012072) #26	NT5C1A (ENSSMRG00000012074) #27	PABPC4 (ENSSMRG00000012076) #29	PPIE (ENSSMRG00000012079) #25	ENSSMRG00000012080	ENSSMRG00000012085 #24	MACF1 (ENSSMRG00000012094) #34	ENSSMRG00000013690 #34	NDUFS5 (ENSSMRG00000015911) #35	AZIN2 (ENSSMRG00000015912)	AK2 (ENSSMRG00000015914)	RNF19B (ENSSMRG00000015915)	TMEM54 (ENSSMRG00000015916)	HPCA (ENSSMRG00000015917)
Anura	ANCESTRAL SPECIES	99	ENSGT00950000182995.e.a.b	ENSGT00390000002919 #35	ENSGT00940000155824.C #34	ENSGT00940000159125	ENSGT00440000035378.c	ENSGT00940000158000	ENSGT00940000156197	ENSGT00490000043398	ENSGT00390000002428.a	ENSGT00910000144211	ENSGT00940000162741	ENSGT00940000156790 #18	ENSGT00390000017955.c #19	ENSGT00390000005318.b.b.b #20	ENSGT00940000158613 #21	ENSGT00390000015214 #22	ENSGT00390000015159.a.a	ENSGT00940000161166 #26	ENSGT00390000017767.b.b #27	ENSGT00940000154788 #29	ENSGT00940000158790 #25
Frog	MODERN SPECIES	2	ENSXETG00000037979	ndufs5 (ENSXETG00000007371) #35	macf1 (ENSXETG00000007367) #34	vav1 (ENSXETG00000007366)	fuca1 (ENSXETG00000046499)	gale (ENSXETG00000001170)	lypla2 (ENSXETG00000025533)	eloa (ENSXETG00000001176)	rpl11 (ENSXETG00000001178)	ENSXETG00000045098	eef1a1o (ENSXETG00000022604)	ppt1 (ENSXETG00000001183) #18	cap1 (ENSXETG00000001184) #19	mfsd2a (ENSXETG00000001185) #20	mycl (ENSXETG00000010956) #21	trit1 (ENSXETG00000010952) #22	XB5901009 [provisional] (ENSXETG00000010951)	hpcal4 (ENSXETG00000036709) #26	nt5c1b (ENSXETG00000037368) #27	ENSXETG00000043250	pabpc4 (ENSXETG00000010946) #29	ppie (ENSXETG00000010944) #25	bmp8 (ENSXETG00000010940) #24	ypel2 (ENSXETG00000040712)	rpl23a (ENSXETG00000026189)	dhx40 (ENSXETG00000010939)	ENSXETG00000042881	cltc (ENSXETG00000010738)	ptrh2 (ENSXETG00000043912)	vmp1 (ENSXETG00000010736)	tubd1 (ENSXETG00000010735)
Leishan spiny toad	MODERN SPECIES	5	FUCA1 (ENSLLEG00000008767)	GALE (ENSLLEG00000008595)	ENSLLEG00000008556	LYPLA2 (ENSLLEG00000008415)	PITHD1 (ENSLLEG00000008340)	ENSLLEG00000008280	RPL11 (ENSLLEG00000008072)	ENSLLEG00000008009	PPT1 (ENSLLEG00000007952) #18	ENSLLEG00000007719 #19	MFSD2A (ENSLLEG00000007641) #20	ENSLLEG00000007622	MYCL (ENSLLEG00000007604) #21	ENSLLEG00000007582	ENSLLEG00000007569	TRIT1 (ENSLLEG00000007516) #22	ENSLLEG00000007501	ENSLLEG00000007421	HPCAL4 (ENSLLEG00000007356) #26	ENSLLEG00000007344	NT5C1A (ENSLLEG00000007297) #27	PABPC4 (ENSLLEG00000006479) #29	ENSLLEG00000006270 #25	ENSLLEG00000006240	PTRH2 (ENSLLEG00000006189)	CLTC (ENSLLEG00000005307)	DHX40 (ENSLLEG00000005122)	ENSLLEG00000004110	ENSLLEG00000004105	ENSLLEG00000004100	ENSLLEG00000004098
Coelacanth	MODERN SPECIES	409									OSCP1 (ENSLACG00000011564)	PABPC4 (ENSLACG00000011907) #29	ENSLACG00000012215 #28	ENSLACG00000012473	NT5C1A (ENSLACG00000012671) #27	MFSD2A (ENSLACG00000012951) #20	MYCL (ENSLACG00000013771) #21	TRIT1 (ENSLACG00000013861) #22	fam49al (ENSLACG00000014201)	hpcal4 (ENSLACG00000014888)	CAP1 (ENSLACG00000014998) #19	PPT1 (ENSLACG00000015155) #18	ENSLACG00000015216	eef1a1l1 (ENSLACG00000015342)	ENSLACG00000015392	MACO1 (ENSLACG00000015510)	ENSLACG00000015690	TMEM50A (ENSLACG00000015760)	MAN1C1 (ENSLACG00000015845)	ENSLACG00000016044	ENSLACG00000016086	SLC30A2 (ENSLACG00000016311)	TRIM63 (ENSLACG00000016332)