Rodentia_A	ANCESTRAL SPECIES	3	ENSGT00940000160264 #7	ENSGT00940000156604 #8	ENSGT00940000160825 #9	ENSGT00900000143602 #10	ENSGT01030000234667.a.a.a.a.a #11	ENSGT00940000159764 #12	ENSGT00940000162499 #13	ENSGT00940000156957 #14	ENSGT00940000161349 #15	ENSGT00390000006890 #16	ENSGT00940000157377 #17	ENSGT00550000075078 #18	ENSGT00940000160415 #19	ENSGT00390000005900 #20	ENSGT00950000182881.a.a.b #21	ENSGT00950000182910.b #22	ENSGT01050000244905.B #23	ENSGT01080000257420.C.b.b.a.a #24	ENSGT01080000257420.C.b.b.a.b.b #25	ENSGT00390000016401 #26	ENSGT00390000014272 #27	ENSGT00940000156363 #28	ENSGT00940000154971 #29	ENSGT00510000049735	ENSGT00940000158799 #30	ENSGT00940000153173.b.b #31	ENSGT00940000154994.b	ENSGT00940000157202 #32	ENSGT00940000157943.b #33	ENSGT00940000155338 #34	ENSGT00510000048410 #35
Sciuridae	ANCESTRAL SPECIES	4	ENSGT00940000160264 #7	ENSGT00940000156604 #8	ENSGT00940000160825 #9	ENSGT00900000143602 #10	ENSGT01030000234667.a.a.a.a.a #11	ENSGT00940000159764 #12	ENSGT00940000162499 #13	ENSGT00940000156957 #14	ENSGT00940000161349 #15	ENSGT00390000006890 #16	ENSGT00940000157377 #17	ENSGT00550000075078 #18	ENSGT00940000160415 #19	ENSGT00390000005900 #20	ENSGT00950000182881.a.a.b #21	ENSGT00950000182910.b #22	ENSGT01050000244905.B #23	ENSGT01080000257420.C.b.b.a.a #24	ENSGT01080000257420.C.b.b.a.b.b #25	ENSGT00390000016401 #26	ENSGT00390000014272 #27	ENSGT00940000156363 #28	ENSGT00940000154971 #29	ENSGT00510000049735	ENSGT00940000158799 #30	ENSGT00940000153173.b.b #31	ENSGT00940000154994.b	ENSGT00940000157202 #32	ENSGT00940000157943.b #33	ENSGT00940000155338 #34	ENSGT00510000048410 #35
Marmotini	ANCESTRAL SPECIES	8	ENSGT00940000160264 #7	ENSGT00940000156604 #8	ENSGT00940000160825 #9	ENSGT00900000143602 #10	ENSGT01030000234667.a.a.a.a.a #11	ENSGT00940000159764 #12	ENSGT00940000162499 #13	ENSGT00940000156957 #14	ENSGT00940000161349 #15	ENSGT00390000006890 #16	ENSGT00940000157377 #17	ENSGT00550000075078 #18	ENSGT00940000160415 #19	ENSGT00390000005900 #20	ENSGT00950000182881.a.a.b #21	ENSGT00950000182910.b #22	ENSGT01050000244905.B #23	ENSGT01080000257420.C.b.b.a.a #24	ENSGT01080000257420.C.b.b.a.b.b #25	ENSGT00390000016401 #26	ENSGT00390000014272 #27	ENSGT00940000156363 #28	ENSGT00940000154971 #29	ENSGT00510000049735	ENSGT00940000158799 #30	ENSGT00940000153173.b.b #31	ENSGT00940000154994.b	ENSGT00940000157202 #32	ENSGT00940000157943.b #33	ENSGT00940000155338 #34	ENSGT00510000048410 #35
Alpin marmot	MODERN SPECIES	42	ENSMMMG00000005184 #7	EZH1 (ENSMMMG00000005196) #8	CNTNAP1 (ENSMMMG00000005268) #9	ENSMMMG00000005324 #10	CCR10 (ENSMMMG00000005331) #11	PLEKHH3 (ENSMMMG00000005351) #12	TUBG2 (ENSMMMG00000005392) #13	TUBG1 (ENSMMMG00000005405) #14	RETREG3 (ENSMMMG00000005418) #15	PSMC3IP (ENSMMMG00000005444) #16	MLX (ENSMMMG00000005464) #17	COASY (ENSMMMG00000005496) #18	HSD17B1 (ENSMMMG00000005512) #19	NAGLU (ENSMMMG00000005528) #20	ATP6V0A1 (ENSMMMG00000005552) #21	CAVIN1 (ENSMMMG00000005775) #22	STAT3 (ENSMMMG00000005779) #23	STAT5A (ENSMMMG00000005892) #24	STAT5B (ENSMMMG00000005973) #25	GHDC (ENSMMMG00000006013) #26	HCRT (ENSMMMG00000006029) #27	KCNH4 (ENSMMMG00000006041) #28	RAB5C (ENSMMMG00000006088) #29	KAT2A (ENSMMMG00000006120) #30	DHX58 (ENSMMMG00000006156) #31	ZNF385C (ENSMMMG00000006176) #32	ENSMMMG00000006193 #33	DNAJC7 (ENSMMMG00000006215) #34	CNP (ENSMMMG00000006240) #35	ENSMMMG00000006244 #36	ENSMMMG00000006252 #37
Marmotini_b	ANCESTRAL SPECIES	5	ENSGT00940000159871	ENSGT00390000014892	ENSGT00940000160264 #7	ENSGT00940000156604 #8	ENSGT00940000160825 #9	ENSGT01030000234667.a.a.a.a.a #11	ENSGT00940000159764 #12	ENSGT00940000156957 #14	ENSGT00940000161349 #15	ENSGT00390000006890 #16	ENSGT00940000157377 #17	ENSGT00550000075078 #18	ENSGT00940000160415 #19	ENSGT00390000005900 #20	ENSGT00950000182881.a.a.b #21	ENSGT00950000182910.b #22	ENSGT01050000244905.B #23	ENSGT01080000257420.C.b.b.a.a #24	ENSGT01080000257420.C.b.b.a.b.b #25	ENSGT00390000016401 #26	ENSGT00390000014272 #27	ENSGT00940000156363 #28	ENSGT00940000154971 #29	ENSGT00510000049735	ENSGT00940000158799 #30	ENSGT00940000153173.b.b #31	ENSGT00940000154994.b	ENSGT00940000157202 #32	ENSGT00940000157943.b.i #33	ENSGT00940000155338 #34	ENSGT00510000048410 #35
Arctic ground squirrel	MODERN SPECIES	46	VPS25 (ENSUPAG00010010087)	RAMP2 (ENSUPAG00010010079) #7	EZH1 (ENSUPAG00010009961) #8	CCR10 (ENSUPAG00010009957) #11	CNTNAP1 (ENSUPAG00010009924) #9	PLEKHH3 (ENSUPAG00010009888) #12	ENSUPAG00010009880 #14	TUBG1 (ENSUPAG00010009862) #14	RETREG3 (ENSUPAG00010009853) #15	PSMC3IP (ENSUPAG00010009849) #16	MLX (ENSUPAG00010009827) #17	COASY (ENSUPAG00010009813) #18	HSD17B1 (ENSUPAG00010009808) #19	NAGLU (ENSUPAG00010009802) #20	ATP6V0A1 (ENSUPAG00010009720) #21	CAVIN1 (ENSUPAG00010009709) #22	STAT3 (ENSUPAG00010009648) #23	STAT5A (ENSUPAG00010009605) #24	ENSUPAG00010009596 #25	ENSUPAG00010009583 #25	GHDC (ENSUPAG00010009572) #26	HCRT (ENSUPAG00010009569) #27	KCNH4 (ENSUPAG00010009543) #28	RAB5C (ENSUPAG00010009535) #29	HSPB9 (ENSUPAG00010009527)	KAT2A (ENSUPAG00010009504) #30	DHX58 (ENSUPAG00010009486) #31	C17orf113 (ENSUPAG00010009476)	ZNF385C (ENSUPAG00010009440) #32	NKIRAS2 (ENSUPAG00010009426) #33	DNAJC7 (ENSUPAG00010009401) #34
Eurasian red squirrel	MODERN SPECIES	12	VPS25 (ENSSVLG00005003880)	RAMP2 (ENSSVLG00005003908) #7	EZH1 (ENSSVLG00005003960) #8	CNTNAP1 (ENSSVLG00005004025) #9	CCR10 (ENSSVLG00005004046) #11	PLEKHH3 (ENSSVLG00005004060) #12	TUBG2 (ENSSVLG00005004078) #13	TUBG1 (ENSSVLG00005004092) #14	RETREG3 (ENSSVLG00005004111) #15	PSMC3IP (ENSSVLG00005004134) #16	MLX (ENSSVLG00005004171) #17	COASY (ENSSVLG00005004216) #18	HSD17B1 (ENSSVLG00005004237) #19	ENSSVLG00005004269 #20	ATP6V0A1 (ENSSVLG00005004340) #21	CAVIN1 (ENSSVLG00005004409) #22	STAT3 (ENSSVLG00005004451) #23	STAT5A (ENSSVLG00005004549) #24	STAT5B (ENSSVLG00005004598) #25	GHDC (ENSSVLG00005000199) #26	HCRT (ENSSVLG00005000222) #27	KCNH4 (ENSSVLG00005000254) #28	ENSSVLG00005000284 #29	HSPB9 (ENSSVLG00005000293)	KAT2A (ENSSVLG00005000319) #30	DHX58 (ENSSVLG00005000354) #31	ZNF385C (ENSSVLG00005000419) #32	C17orf113 (ENSSVLG00005000459)	ENSSVLG00005000476 #33	ENSSVLG00005000498 #34	CNP (ENSSVLG00005000524) #35
Hystricomorpha	ANCESTRAL SPECIES	3	ENSGT00390000014892	ENSGT00940000160264 #7	ENSGT00940000156604 #8	ENSGT00940000160825 #9	ENSGT01030000234667.a.a.a.a.a #11	ENSGT00940000159764 #12	ENSGT00940000162499 #13	ENSGT00940000156957 #14	ENSGT00940000161349 #15	ENSGT00390000006890 #16	ENSGT00940000157377 #17	ENSGT00550000075078 #18	ENSGT00940000160415 #19	ENSGT00390000005900 #20	ENSGT00950000182881.a.a.b #21	ENSGT00950000182910.b #22	ENSGT01050000244905.B #23	ENSGT01080000257420.C.b.b.b.c ##25	ENSGT00390000016401 #26	ENSGT00390000014272 #27	ENSGT00940000156363 #28	ENSGT00940000154971 #29	ENSGT00510000049735	ENSGT00940000158799 #30	ENSGT00940000153173.b.b #31	ENSGT00940000157202 #32	ENSGT00940000157943.b #33	ENSGT00940000155338 #34	ENSGT00510000048410 #35	ENSGT00390000007911 #37	ENSGT00940000154881
Naked mole-rat female	MODERN SPECIES	12	WNK4 (ENSHGLG00000014338)	VPS25 (ENSHGLG00000018591)	RAMP2 (ENSHGLG00000040881) #7	ENSHGLG00000010367 #8	CNTNAP1 (ENSHGLG00000018356) #9	CCR10 (ENSHGLG00000011006) #11	PLEKHH3 (ENSHGLG00000035935) #12	TUBG2 (ENSHGLG00000011925) #13	TUBG1 (ENSHGLG00000012574) #14	RETREG3 (ENSHGLG00000011981) #15	ENSHGLG00000013066 #16	MLX (ENSHGLG00000014995) #17	COASY (ENSHGLG00000012414) #18	NAGLU (ENSHGLG00000011489) #20	ATP6V0A1 (ENSHGLG00000018815) #21	CAVIN1 (ENSHGLG00000018343) #22	STAT3 (ENSHGLG00000010906) #23	ENSHGLG00000012522 ##25	ENSHGLG00000037543 #26	KCNH4 (ENSHGLG00000011673) #28	ENSHGLG00000046408	ENSHGLG00000032125	KAT2A (ENSHGLG00000014215) #30	DHX58 (ENSHGLG00000011529) #31	ZNF385C (ENSHGLG00000013481) #32	ENSHGLG00000034407	ENSHGLG00000039749 #33	DNAJC7 (ENSHGLG00000016992) #34	CNP (ENSHGLG00000016638) #35	ODAD4 (ENSHGLG00000016605) #37	ACLY (ENSHGLG00000014233)
Hystricomorpha_a	ANCESTRAL SPECIES		ENSGT00390000014892	ENSGT00940000160264 #7	ENSGT00940000156604 #8	ENSGT00940000160825 #9	ENSGT01030000234667.a.a.a.a.a #11	ENSGT00940000159764 #12	ENSGT00940000162499 #13	ENSGT00940000156957 #14	ENSGT00940000161349 #15	ENSGT00390000006890 #16	ENSGT00940000157377 #17	ENSGT00550000075078 #18	ENSGT00940000160415 #19	ENSGT00390000005900 #20	ENSGT00950000182881.a.a.b #21	ENSGT00950000182910.b #22	ENSGT01050000244905.B #23	ENSGT01080000257420.C.b.b.b.d ##25	ENSGT01080000257420.C.b.b.b.c ##25	ENSGT00390000016401 #26	ENSGT00390000014272 #27	ENSGT00940000156363 #28	ENSGT00940000154971 #29	ENSGT00510000049735	ENSGT00940000158799 #30	ENSGT00940000153173.b.b #31	ENSGT00940000157202 #32	ENSGT00940000157943.b #33	ENSGT00940000155338 #34	ENSGT00510000048410 #35	ENSGT00390000007911 #37
Guinea pig	MODERN SPECIES	53	VPS25 (ENSCPOG00000012538)	RAMP2 (ENSCPOG00000034336) #7	EZH1 (ENSCPOG00000012533) #8	CNTNAP1 (ENSCPOG00000008851) #9	CCR10 (ENSCPOG00000008847) #11	PLEKHH3 (ENSCPOG00000010080) #12	TUBG2 (ENSCPOG00000008842) #13	TUBG1 (ENSCPOG00000033099) #14	RETREG3 (ENSCPOG00000002844) #15	PSMC3IP (ENSCPOG00000022571) #16	MLX (ENSCPOG00000035377) #17	COASY (ENSCPOG00000006117) #18	HSD17B1 (ENSCPOG00000021970) #19	NAGLU (ENSCPOG00000010613) #20	ATP6V0A1 (ENSCPOG00000011417) #21	CAVIN1 (ENSCPOG00000036454) #22	STAT3 (ENSCPOG00000007939) #23	ENSCPOG00000012203 ##25	ENSCPOG00000026466 ##25	HCRT (ENSCPOG00000040052) #27	KCNH4 (ENSCPOG00000027074) #28	RAB5C (ENSCPOG00000011190) #29	HSPB9 (ENSCPOG00000026480)	KAT2A (ENSCPOG00000040409) #30	DHX58 (ENSCPOG00000023721) #31	ZNF385C (ENSCPOG00000006417) #32	NKIRAS2 (ENSCPOG00000037805) #33	DNAJC7 (ENSCPOG00000023384) #34	CNP (ENSCPOG00000020940) #35	ODAD4 (ENSCPOG00000023846) #37	ACLY (ENSCPOG00000010813)
Hystricomorpha_b	ANCESTRAL SPECIES		ENSGT00390000014892	ENSGT00940000160264 #7	ENSGT00940000156604 #8	ENSGT00940000160825 #9	ENSGT01030000234667.a.a.a.a.a #11	ENSGT00940000159764 #12	ENSGT00940000162499 #13	ENSGT00940000156957 #14	ENSGT00940000161349 #15	ENSGT00390000006890 #16	ENSGT00940000157377 #17	ENSGT00550000075078 #18	ENSGT00940000160415 #19	ENSGT00390000005900 #20	ENSGT00950000182881.a.a.b #21	ENSGT00950000182910.b #22	ENSGT01050000244905.B #23	ENSGT01080000257420.C.b.b.b.d ##25	ENSGT01080000257420.C.b.b.b.c ##25	ENSGT00390000016401 #26	ENSGT00390000014272 #27	ENSGT00940000156363 #28	ENSGT00940000154971 #29	ENSGT00510000049735	ENSGT00940000158799 #30	ENSGT00940000153173.b.b #31	ENSGT00940000157202 #32	ENSGT00940000157943.b #33	ENSGT00940000155338 #34	ENSGT00510000048410 #35	ENSGT00390000007911 #37
Long-tailed chinchilla	MODERN SPECIES	158	WNK4 (ENSCLAG00000016166)	VPS25 (ENSCLAG00000016527)	RAMP2 (ENSCLAG00000015276) #7	EZH1 (ENSCLAG00000016299) #8	CNTNAP1 (ENSCLAG00000014690) #9	CCR10 (ENSCLAG00000014760) #11	PLEKHH3 (ENSCLAG00000015237) #12	TUBG1 (ENSCLAG00000015846) #14	RETREG3 (ENSCLAG00000016186) #15	PSMC3IP (ENSCLAG00000015875) #16	MLX (ENSCLAG00000017140) #17	COASY (ENSCLAG00000016171) #18	HSD17B1 (ENSCLAG00000016130) #19	NAGLU (ENSCLAG00000016699) #20	ATP6V0A1 (ENSCLAG00000016413) #21	CAVIN1 (ENSCLAG00000016470) #22	STAT3 (ENSCLAG00000014721) #23	ENSCLAG00000016243 ##25	ENSCLAG00000016318 ##25	GHDC (ENSCLAG00000015892) #26	HCRT (ENSCLAG00000016694) #27	KCNH4 (ENSCLAG00000016815) #28	RAB5C (ENSCLAG00000016650) #29	KAT2A (ENSCLAG00000015084) #30	DHX58 (ENSCLAG00000013960) #31	ZNF385C (ENSCLAG00000015100) #32	NKIRAS2 (ENSCLAG00000014896) #33	DNAJC7 (ENSCLAG00000015312) #34	CNP (ENSCLAG00000015883) #35	ODAD4 (ENSCLAG00000014476) #37	ACLY (ENSCLAG00000014600)
Degu	MODERN SPECIES	97	VPS25 (ENSODEG00000018342)	RAMP2 (ENSODEG00000017963) #7	ENSODEG00000017986 #8	CNTNAP1 (ENSODEG00000018056) #9	CCR10 (ENSODEG00000017981) #11	PLEKHH3 (ENSODEG00000018103) #12	TUBG2 (ENSODEG00000018001) #13	TUBG1 (ENSODEG00000018022) #14	RETREG3 (ENSODEG00000018095) #15	PSMC3IP (ENSODEG00000017995) #16	MLX (ENSODEG00000017951) #17	COASY (ENSODEG00000018042) #18	HSD17B1 (ENSODEG00000018063) #19	NAGLU (ENSODEG00000017945) #20	ATP6V0A1 (ENSODEG00000017959) #21	CAVIN1 (ENSODEG00000017991) #22	ENSODEG00000017971 #23	ENSODEG00000018044 ##25	ENSODEG00000018000 ##25	GHDC (ENSODEG00000017948) #26	HCRT (ENSODEG00000017993) #27	KCNH4 (ENSODEG00000018039) #28	RAB5C (ENSODEG00000017920) #29	HSPB9 (ENSODEG00000018407)	KAT2A (ENSODEG00000018011) #30	DHX58 (ENSODEG00000017902) #31	ZNF385C (ENSODEG00000018049) #32	NKIRAS2 (ENSODEG00000017843) #33	DNAJC7 (ENSODEG00000017953) #34	CNP (ENSODEG00000017962) #35	ODAD4 (ENSODEG00000017939) #37