Rodentia_A	ANCESTRAL SPECIES	19	ENSGT00940000163200 #7	ENSGT00940000161808 #8	ENSGT00390000015147	ENSGT00940000161345 #9	ENSGT00940000156340.a #10	ENSGT00440000038585 #11	ENSGT00530000063156.a.a.b #12	ENSGT00940000161061.b #13	ENSGT00940000155608 #14	ENSGT00940000162786 #16	ENSGT00940000161301 #18	ENSGT00940000156366.a.b #19	ENSGT00940000156366.a.a #20	ENSGT00940000156821.k.b #21	ENSGT00940000156821.k.a ##21	ENSGT00390000008529 #22	ENSGT00730000110943.B #23	ENSGT00940000155794 #25	ENSGT00940000154601 #26	ENSGT00940000162815 #27	ENSGT00610000086153 #28	ENSGT00390000000571 #29	ENSGT00390000004906 #30	ENSGT01030000234555.a.a.a.c.b #31	ENSGT00940000153592.B.b.b #32	ENSGT00940000153491.b.a #33	ENSGT00940000159687 #34	ENSGT00500000044989 #35	ENSGT00940000160353 #36	ENSGT00940000163531 #37	ENSGT00940000153307.d.b
Sciuridae	ANCESTRAL SPECIES	42	ENSGT00940000163200 #7	ENSGT00940000161808 #8	ENSGT00390000015147	ENSGT00940000161345 #9	ENSGT00940000156340.a #10	ENSGT00440000038585 #11	ENSGT00530000063156.a.a.b #12	ENSGT00940000161061.b #13	ENSGT00940000155608 #14	ENSGT00940000162786 #16	ENSGT00940000161301 #18	ENSGT00940000156366.a.b #19	ENSGT00940000156366.a.a #20	ENSGT00940000156821.k.b #21	ENSGT00940000156821.k.a ##21	ENSGT00390000008529 #22	ENSGT00730000110943.B #23	ENSGT00940000155794 #25	ENSGT00940000154601 #26	ENSGT00940000162815 #27	ENSGT00610000086153 #28	ENSGT00390000000571 #29	ENSGT00390000004906 #30	ENSGT01030000234555.a.a.a.c.b #31	ENSGT00940000153592.B.b.b #32	ENSGT00940000153491.b.a #33	ENSGT00940000159687 #34	ENSGT00500000044989 #35	ENSGT00940000160353 #36	ENSGT00940000163531 #37	ENSGT00940000153307.d.b
Marmotini	ANCESTRAL SPECIES	53	ENSGT00940000163200 #7	ENSGT00940000161808 #8	ENSGT00390000015147	ENSGT00940000161345 #9	ENSGT00940000156340.a #10	ENSGT00440000038585 #11	ENSGT00530000063156.a.a.b #12	ENSGT00940000161061.b #13	ENSGT00940000155608 #14	ENSGT00940000162786 #16	ENSGT00940000161301 #18	ENSGT00940000156366.a.b #19	ENSGT00940000156366.a.a #20	ENSGT00940000156821.k.b #21	ENSGT00940000156821.k.a ##21	ENSGT00390000008529 #22	ENSGT00730000110943.B #23	ENSGT00940000155794 #25	ENSGT00940000154601 #26	ENSGT00940000162815 #27	ENSGT00610000086153 #28	ENSGT00390000000571 #29	ENSGT00390000004906 #30	ENSGT01030000234555.a.a.a.c.b #31	ENSGT00940000153592.B.b.b #32	ENSGT00940000153491.b.a #33	ENSGT00940000159687 #34	ENSGT00500000044989 #35	ENSGT00940000160353 #36	ENSGT00940000163531 #37	ENSGT00940000153307.d.b.e.a.b
Marmotini_b	ANCESTRAL SPECIES	54	ENSGT00940000163200 #7	ENSGT00940000161808 #8	ENSGT00390000015147	ENSGT00940000161345 #9	ENSGT00940000156340.a #10	ENSGT00440000038585 #11	ENSGT00530000063156.a.a.b #12	ENSGT00940000161061.b #13	ENSGT00940000155608 #14	ENSGT00940000162786 #16	ENSGT00940000161301 #18	ENSGT00940000156366.a.b #19	ENSGT00940000156366.a.a #20	ENSGT00940000156821.k.b #21	ENSGT00940000156821.k.a ##21	ENSGT00390000008529 #22	ENSGT00730000110943.B #23	ENSGT00940000155794 #25	ENSGT00940000154601 #26	ENSGT00940000162815 #27	ENSGT00610000086153 #28	ENSGT00390000000571 #29	ENSGT00390000004906 #30	ENSGT01030000234555.a.a.a.c.b #31	ENSGT00940000153592.B.b.b #32	ENSGT00940000153491.b.a #33	ENSGT00940000159687 #34	ENSGT00500000044989 #35	ENSGT00940000160353 #36	ENSGT00940000163531 #37
Squirrel	MODERN SPECIES	219	ZNF70 (ENSSTOG00000034699) #7	VPREB3 (ENSSTOG00000012405) #8	CHCHD10 (ENSSTOG00000008241) #9	MMP11 (ENSSTOG00000008225) #10	SMARCB1 (ENSSTOG00000012408) #11	DERL3 (ENSSTOG00000012421) #12	SLC2A11 (ENSSTOG00000020245) #13	MIF (ENSSTOG00000027209) #14	ENSSTOG00000031135 #15	ENSSTOG00000033899 #16	ENSSTOG00000012540 #17	GSTT4 (ENSSTOG00000006561) #18	ENSSTOG00000003054 #19	ENSSTOG00000011785 #20	ENSSTOG00000034559 #21	CABIN1 (ENSSTOG00000011791) #22	SUSD2 (ENSSTOG00000011833) #23	ENSSTOG00000032130 #24	GGT5 (ENSSTOG00000022400) #25	ENSSTOG00000014350 #26	LRRC75B (ENSSTOG00000032043) #27	SNRPD3 (ENSSTOG00000025674) #28	GUCD1 (ENSSTOG00000000165) #29	UPB1 (ENSSTOG00000000161) #30	ADORA2A (ENSSTOG00000019368) #31	SPECC1L (ENSSTOG00000000157) #32	BCR (ENSSTOG00000008468) #33	RAB36 (ENSSTOG00000008444) #34	ENSSTOG00000008429 #35	GNAZ (ENSSTOG00000014033) #36	ENSSTOG00000021638 #37
Arctic ground squirrel	MODERN SPECIES	543											GSTT4 (ENSUPAG00010004224) #18	ENSUPAG00010004232 #19	ENSUPAG00010004256 #20	ENSUPAG00010004262 #21	ENSUPAG00010004270 ##21	CABIN1 (ENSUPAG00010004283) #22	SUSD2 (ENSUPAG00010004527) #23	GGT5 (ENSUPAG00010004553) #25	ENSUPAG00010004571 ##24	ENSUPAG00010004577 #26	LRRC75B (ENSUPAG00010004607) #27	SNRPD3 (ENSUPAG00010004612) #28	GUCD1 (ENSUPAG00010004627) #29	UPB1 (ENSUPAG00010004637) #30	ADORA2A (ENSUPAG00010004649) #31	SPECC1L (ENSUPAG00010004655) #32	BCR (ENSUPAG00010004667) #33	RAB36 (ENSUPAG00010004696) #34	RSPH14 (ENSUPAG00010004716) #35	GNAZ (ENSUPAG00010004743) #36	ENSUPAG00010004753 #37
Alpin marmot	MODERN SPECIES	67	ZNF70 (ENSMMMG00000000430) #7	VPREB3 (ENSMMMG00000000414) #8	C22orf15 (ENSMMMG00000000395)	ENSMMMG00000000382 #9	MMP11 (ENSMMMG00000000358) #10	SMARCB1 (ENSMMMG00000000329) #11	DERL3 (ENSMMMG00000000320) #12	SLC2A11 (ENSMMMG00000000228) #13	MIF (ENSMMMG00000000214) #14	ENSMMMG00000000149 #16	GSTT4 (ENSMMMG00000000110) #18	ENSMMMG00000000070 #19	ENSMMMG00000000067 #20	ENSMMMG00000000052 #21	ENSMMMG00000000042 ##21	CABIN1 (ENSMMMG00000000021) #22	SUSD2 (ENSMMMG00000000013) #23	GGT5 (ENSMMMG00000024445) #25	ENSMMMG00000024444 #26	LRRC75B (ENSMMMG00000024443) #27	SNRPD3 (ENSMMMG00000024441) #28	GUCD1 (ENSMMMG00000024440) #29	UPB1 (ENSMMMG00000024439) #30	ADORA2A (ENSMMMG00000024438) #31	SPECC1L (ENSMMMG00000024437) #32	BCR (ENSMMMG00000024436) #33	RAB36 (ENSMMMG00000024435) #34	GNAZ (ENSMMMG00000024434) #36	RSPH14 (ENSMMMG00000024432) #35	ENSMMMG00000024429 #37	ENSMMMG00000024427
Eurasian red squirrel	MODERN SPECIES	17	VPREB3 (ENSSVLG00005006794) #8	C22orf15 (ENSSVLG00005006744)	CHCHD10 (ENSSVLG00005006718) #9	MMP11 (ENSSVLG00005006688) #10	SMARCB1 (ENSSVLG00005006606) #11	DERL3 (ENSSVLG00005006510) #12	SLC2A11 (ENSSVLG00005006380) #13	MIF (ENSSVLG00005006339) #14	ENSSVLG00005006314	ENSSVLG00005006292 #16	GSTT4 (ENSSVLG00005006254) #18	ENSSVLG00005006229 #19	ENSSVLG00005006193 ##19	ENSSVLG00005006177 #21	ENSSVLG00005006131	CABIN1 (ENSSVLG00005006001) #22	SUSD2 (ENSSVLG00005005881) #23	ENSSVLG00005005852	GGT5 (ENSSVLG00005005644) #25	ENSSVLG00005005413 #26	LRRC75B (ENSSVLG00005005370) #27	SNRPD3 (ENSSVLG00005005327) #28	GUCD1 (ENSSVLG00005005243) #29	UPB1 (ENSSVLG00005005173) #30	ADORA2A (ENSSVLG00005005154) #31	SPECC1L (ENSSVLG00005005084) #32	ENSSVLG00005005044	BCR (ENSSVLG00005004988) #33	RAB36 (ENSSVLG00005004911) #34	GNAZ (ENSSVLG00005004858) #36	RSPH14 (ENSSVLG00005004828) #35
Hystricomorpha	ANCESTRAL SPECIES		ENSGT00950000182928.A.b	ENSGT00530000065303	ENSGT00940000163200 #7	ENSGT00940000161808 #8	ENSGT00390000015147	ENSGT00940000161345 #9	ENSGT00940000156340.a #10	ENSGT00440000038585 #11	ENSGT00530000063156.a.a.b #12	ENSGT00940000161061.b #13	ENSGT00940000155608 #14	ENSGT00940000162786 #16	ENSGT00940000161301 #18	ENSGT00940000156366.a.b #19	ENSGT00940000156366.b ##19	ENSGT00390000008529 #22	ENSGT00730000110943.B #23	ENSGT00940000155794 #25	ENSGT00940000154601 #26	ENSGT00940000162815 #27	ENSGT00610000086153 #28	ENSGT00390000000571 #29	ENSGT00390000004906 #30	ENSGT01030000234555.a.a.a.c.b #31	ENSGT00940000153592.B.b.b #32	ENSGT00940000153491.b.a #33	ENSGT00940000159687 #34	ENSGT00500000044989 #35	ENSGT00940000160353 #36	ENSGT00940000163531 #37	ENSGT00940000153307.d.b
Hystricomorpha_a	ANCESTRAL SPECIES	2	ENSGT00950000182928.A.b	ENSGT00530000065303	ENSGT00940000163200 #7	ENSGT00940000161808 #8	ENSGT00940000161345 #9	ENSGT00390000015147	ENSGT00940000156340.a #10	ENSGT00440000038585 #11	ENSGT00530000063156.a.a.b #12	ENSGT00940000161061.b #13	ENSGT00940000155608 #14	ENSGT00940000162786 #16	ENSGT00940000161301 #18	ENSGT00940000156366.a.b #19	ENSGT00940000156366.b ##19	ENSGT00390000008529 #22	ENSGT00730000110943.B #23	ENSGT00940000155794 #25	ENSGT00940000154601 #26	ENSGT00940000162815 #27	ENSGT00610000086153 #28	ENSGT00390000000571 #29	ENSGT00390000004906 #30	ENSGT01030000234555.a.a.a.c.b #31	ENSGT00940000153592.B.b.b #32	ENSGT00940000153491.b.a #33	ENSGT00940000159687 #34	ENSGT00500000044989 #35	ENSGT00940000160353 #36	ENSGT00940000163531 #37	ENSGT00940000153307.d.b
Hystricomorpha_b	ANCESTRAL SPECIES	1	ENSGT00940000156383	ENSGT00950000182928.A.b	ENSGT00530000065303	ENSGT00940000163200 #7	ENSGT00940000161808 #8	ENSGT00940000161345 #9	ENSGT00390000015147	ENSGT00940000156340.a #10	ENSGT00440000038585 #11	ENSGT00530000063156.a.a.b #12	ENSGT00940000161061.b #13	ENSGT00940000155608 #14	ENSGT00940000161301 #18	ENSGT00940000156366.a.b #19	ENSGT00940000156366.b ##19	ENSGT00390000008529 #22	ENSGT00730000110943.B #23	ENSGT00940000155794 #25	ENSGT00940000154601 #26	ENSGT00940000162815 #27	ENSGT00610000086153 #28	ENSGT00390000000571 #29	ENSGT00390000004906 #30	ENSGT01030000234555.a.a.a.c.b #31	ENSGT00940000153592.B.b.b #32	ENSGT00940000153491.b.a #33	ENSGT00940000159687 #34	ENSGT00500000044989 #35	ENSGT00940000160353 #36	ENSGT00940000163531 #37	ENSGT00940000162558.j
Long-tailed chinchilla	MODERN SPECIES	162	GIT2 (ENSCLAG00000008324)	ANKRD13A (ENSCLAG00000011896)	ZNF70 (ENSCLAG00000017808) #7	VPREB3 (ENSCLAG00000012632) #8	CHCHD10 (ENSCLAG00000010445) #9	C22orf15 (ENSCLAG00000011415)	MMP11 (ENSCLAG00000009935) #10	SMARCB1 (ENSCLAG00000008073) #11	DERL3 (ENSCLAG00000009023) #12	SLC2A11 (ENSCLAG00000012425) #13	MIF (ENSCLAG00000009103) #14	GSTT4 (ENSCLAG00000008513) #18	ENSCLAG00000008091 #19	ENSCLAG00000015172	ENSCLAG00000013010 ##19	CABIN1 (ENSCLAG00000007869) #22	SUSD2 (ENSCLAG00000011078) #23	GGT5 (ENSCLAG00000007957) #25	ENSCLAG00000011279 #26	LRRC75B (ENSCLAG00000012160) #27	SNRPD3 (ENSCLAG00000011403) #28	GUCD1 (ENSCLAG00000010734) #29	UPB1 (ENSCLAG00000010001) #30	ADORA2A (ENSCLAG00000009130) #31	SPECC1L (ENSCLAG00000008544) #32	BCR (ENSCLAG00000010442) #33	RAB36 (ENSCLAG00000010317) #34	GNAZ (ENSCLAG00000010101) #36	RSPH14 (ENSCLAG00000007632) #35	ENSCLAG00000009100 #37	ENSCLAG00000014380
Degu	MODERN SPECIES	120	TCHP (ENSODEG00000009235)	GIT2 (ENSODEG00000007446)	ANKRD13A (ENSODEG00000008089)	C12orf76 (ENSODEG00000006686)	ZNF70 (ENSODEG00000019446) #7	VPREB3 (ENSODEG00000006591) #8	CHCHD10 (ENSODEG00000006934) #9	MMP11 (ENSODEG00000008612) #10	ENSODEG00000006764 #11	DERL3 (ENSODEG00000007454) #12	SLC2A11 (ENSODEG00000007118) #13	MIF (ENSODEG00000006630) #14	GSTT4 (ENSODEG00000007090) #18	ENSODEG00000008425 #19	ENSODEG00000007409 ##19	CABIN1 (ENSODEG00000007920) #22	SUSD2 (ENSODEG00000008082) #23	GGT5 (ENSODEG00000008164) #25	ENSODEG00000012141 #26	LRRC75B (ENSODEG00000007792) #27	SNRPD3 (ENSODEG00000008064) #28	GUCD1 (ENSODEG00000009190) #29	UPB1 (ENSODEG00000008169) #30	ENSODEG00000019780	ADORA2A (ENSODEG00000009102) #31	SPECC1L (ENSODEG00000008131) #32	ENSODEG00000007297	ENSODEG00000019487	ENSODEG00000007642	BCR (ENSODEG00000009004) #33	RAB36 (ENSODEG00000009016) #34
Guinea pig	MODERN SPECIES	4	GIT2 (ENSCPOG00000012863)	ANKRD13A (ENSCPOG00000012868)	C12orf76 (ENSCPOG00000030105)	ZNF70 (ENSCPOG00000032266) #7	VPREB3 (ENSCPOG00000038412) #8	CHCHD10 (ENSCPOG00000014612) #9	MMP11 (ENSCPOG00000003507) #10	SMARCB1 (ENSCPOG00000036261) #11	DERL3 (ENSCPOG00000014616) #12	SLC2A11 (ENSCPOG00000013518) #13	MIF (ENSCPOG00000033496) #14	ENSCPOG00000033118 #16	GSTT4 (ENSCPOG00000019914) #18	ENSCPOG00000004068 #19	ENSCPOG00000036578 ##19	CABIN1 (ENSCPOG00000010872) #22	SUSD2 (ENSCPOG00000012834) #23	GGT5 (ENSCPOG00000008003) #25	ENSCPOG00000008956 #26	LRRC75B (ENSCPOG00000030691) #27	SNRPD3 (ENSCPOG00000033102) #28	GUCD1 (ENSCPOG00000030584) #29	UPB1 (ENSCPOG00000003919) #30	ADORA2A (ENSCPOG00000006104) #31	SPECC1L (ENSCPOG00000007308) #32	BCR (ENSCPOG00000021817) #33	RAB36 (ENSCPOG00000011501) #34	RSPH14 (ENSCPOG00000011500) #35	GNAZ (ENSCPOG00000033926) #36	ENSCPOG00000023038 #37	ENSCPOG00000037725
Naked mole-rat female	MODERN SPECIES	15	ENSHGLG00000014489	GIT2 (ENSHGLG00000015609)	ANKRD13A (ENSHGLG00000018688)	ENSHGLG00000047620	ENSHGLG00000018817 #7	VPREB3 (ENSHGLG00000043407) #8	C22orf15 (ENSHGLG00000041140)	CHCHD10 (ENSHGLG00000037941) #9	MMP11 (ENSHGLG00000018761) #10	SMARCB1 (ENSHGLG00000019077) #11	DERL3 (ENSHGLG00000018280) #12	SLC2A11 (ENSHGLG00000018680) #13	Mif (ENSHGLG00000041245) #14	ENSHGLG00000011840 #19	ENSHGLG00000035410	CABIN1 (ENSHGLG00000010286) #22	SUSD2 (ENSHGLG00000009484) #23	ENSHGLG00000018936 #25	ENSHGLG00000019551 #26	LRRC75B (ENSHGLG00000016897) #27	ENSHGLG00000046145	SNRPD3 (ENSHGLG00000044971) #28	GUCD1 (ENSHGLG00000037847) #29	UPB1 (ENSHGLG00000014750) #30	ADORA2A (ENSHGLG00000032320) #31	ENSHGLG00000011969 #32	ENSHGLG00000010295 #33	ENSHGLG00000009476 #34	RSPH14 (ENSHGLG00000011976) #35	GNAZ (ENSHGLG00000011460) #36	ENSHGLG00000009410 #37