Bovinae	ANCESTRAL SPECIES	1	ENSGT00950000183312 #7	ENSGT00730000111554	ENSGT00730000111580 #8	ENSGT00940000165404 #9	ENSGT00940000163905 #10	ENSGT00940000162465 #13	ENSGT00940000154467.b.b.b #15	ENSGT00940000154467.b.b.a ##18	ENSGT00940000154467.a.h.a.a ##18	ENSGT00940000154467.b.a #16	ENSGT00940000154467.a.h.b ##18	ENSGT00940000154467.a.i.b #18	ENSGT00940000163983 #19	ENSGT00940000162966 #20	ENSGT00940000154172.z #21	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #25	ENSGT00940000163537 #26	ENSGT00940000161521 #27	ENSGT00940000162157 #28	ENSGT00940000159364 #29	ENSGT00950000186450 #30	ENSGT00940000161581 #31	ENSGT00390000008281 #32	ENSGT00390000003062 #33	ENSGT00940000154716 #34	ENSGT00950000183212.C #35	ENSGT00950000182891.a.a.b.a.a.a.b.a.b #36	ENSGT00950000183065.B #37	ENSGT00940000154489.B
Bos	ANCESTRAL SPECIES		ENSGT00730000111554	ENSGT00730000111580 #8	ENSGT00940000163498	ENSGT00970000197102 #11	ENSGT01050000245143 #12	ENSGT00940000162465 #13	ENSGT00940000154467.b.b.b #15	ENSGT00940000154467.b.b.a ##18	ENSGT00940000154467.a.h.a.a ##18	ENSGT00940000154467.b.a #16	ENSGT00940000154467.a.h.b ##18	ENSGT00940000154467.a.i.b #18	ENSGT00940000163983 #19	ENSGT00940000162966 #20	ENSGT00940000154172.z #21	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #25	ENSGT00940000163537 #26	ENSGT00940000161521 #27	ENSGT00940000162157 #28	ENSGT00940000159364 #29	ENSGT00950000186450 #30	ENSGT00940000161581 #31	ENSGT00390000008281 #32	ENSGT00390000003062 #33	ENSGT00940000154716 #34	ENSGT00950000183212.C #35	ENSGT00950000182891.a.a.b.a.a.a.b.a.b #36	ENSGT00950000183065.B #37	ENSGT00940000154489.B
Bos_b	ANCESTRAL SPECIES	1	ENSGT00730000111580 #8	ENSGT00940000165404 #9	ENSGT00940000163905 #10	ENSGT00970000197102 #11	ENSGT01050000245143 #12	ENSGT00940000162465 #13	ENSGT00940000154467.b.b.b #15	ENSGT00940000154467.a.h.a.b ##18	ENSGT00940000154467.b.a #16	ENSGT00940000154467.a.i.a.a #17	ENSGT00940000154467.a.h.b ##18	ENSGT00940000154467.a.i.b #18	ENSGT00940000163983 #19	ENSGT00940000162966 #20	ENSGT00940000154172.z #21	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #25	ENSGT00940000163537 #26	ENSGT00940000161521 #27	ENSGT00940000162157 #28	ENSGT00940000159364 #29	ENSGT00950000186450 #30	ENSGT00940000161581 #31	ENSGT00390000008281 #32	ENSGT00390000003062 #33	ENSGT00940000154716 #34	ENSGT00950000183212.C #35	ENSGT00950000182891.a.a.b.a.a.a.b.a.b #36	ENSGT00950000183065.B #37	ENSGT00940000154539.b.u
Hybrid Bos Indicus	MODERN SPECIES	22	LCE1A (ENSBIXG00005007992) #7	C1orf68 (ENSBIXG00005007957) #8	LCE3B (ENSBIXG00005000042) #9	ENSBIXG00005007950 #10	ENSBIXG00005007945 #11	ENSBIXG00005007940 #12	ENSBIXG00005007930 #13	ENSBIXG00005005284 #14	ENSBIXG00005029242 #15	ENSBIXG00005001535 #16	ENSBIXG00005001542 #17	ENSBIXG00005001545 #18	ENSBIXG00005001555 #19	TCHHL1 (ENSBIXG00005001560) #20	ENSBIXG00005005274 #21	S100A10 (ENSBIXG00005029229) #22	THEM4 (ENSBIXG00005005256) #23	ENSBIXG00005001633 #24	THEM5 (ENSBIXG00005029208) #25	C2CD4D (ENSBIXG00005001695) #26	RORC (ENSBIXG00005001718) #27	LINGO4 (ENSBIXG00005001805) #28	TDRKH (ENSBIXG00005029148) #29	ENSBIXG00005005150 #30	OAZ3 (ENSBIXG00005001942) #31	MRPL9 (ENSBIXG00005005138) #32	RIIAD1 (ENSBIXG00005001997) #33	CELF3 (ENSBIXG00005005120) #34	SNX27 (ENSBIXG00005005088) #35	ENSBIXG00005005039 #36	TUFT1 (ENSBIXG00005028855) #37
Cow	MODERN SPECIES	22	ENSBTAG00000053743	ENSBTAG00000054620	C3H1orf68 (ENSBTAG00000046138) #8	ENSBTAG00000050431 #10	CRCT1 (ENSBTAG00000008700) #11	ENSBTAG00000032446	CRNN (ENSBTAG00000054069) #13	ENSBTAG00000054258 #15	ENSBTAG00000054333 ##18	ENSBTAG00000048997 #16	ENSBTAG00000039357 ##18	RPTN (ENSBTAG00000039260) #18	TCHH (ENSBTAG00000053103)	TCHHL1 (ENSBTAG00000015854) #20	S100A11 (ENSBTAG00000015145) #21	S100A10 (ENSBTAG00000015147) #22	THEM4 (ENSBTAG00000004772) #23	ENSBTAG00000051270 ##24	THEM5 (ENSBTAG00000000690) #25	C2CD4D (ENSBTAG00000047528) #26	RORC (ENSBTAG00000017405) #27	LINGO4 (ENSBTAG00000040596) #28	TDRKH (ENSBTAG00000021594) #29	ENSBTAG00000050352 #30	OAZ3 (ENSBTAG00000021591) #31	MRPL9 (ENSBTAG00000000797) #32	CELF3 (ENSBTAG00000019131) #34	SNX27 (ENSBTAG00000001942) #35	ENSBTAG00000054946 #36	TUFT1 (ENSBTAG00000017566) #37	ENSBTAG00000024407
Bos_a	ANCESTRAL SPECIES	47	ENSGT00730000111554	ENSGT00730000111580 #8	ENSGT00940000163498	ENSGT00970000197102 #11	ENSGT01050000245143 #12	ENSGT00940000162465 #13	ENSGT00940000154467.b.b.b #15	ENSGT00940000154467.b.b.a ##18	ENSGT00940000154467.a.h.a.a ##18	ENSGT00940000154467.b.a #16	ENSGT00940000154467.a.h.b ##18	ENSGT00940000154467.a.i.b #18	ENSGT00940000163983 #19	ENSGT00940000162966 #20	ENSGT00940000154172.z #21	ENSGT00940000154197.b.b #22	ENSGT00940000160047 #23	ENSGT00940000161937 #25	ENSGT00940000161521 #27	ENSGT00940000162157 #28	ENSGT00940000159364 #29	ENSGT00950000186450 #30	ENSGT00940000161581 #31	ENSGT00390000008281 #32	ENSGT00390000003062 #33	ENSGT00940000154716 #34	ENSGT00950000183212.C #35	ENSGT00950000183065.B #37	ENSGT00940000154489.B	ENSGT00940000162698	ENSGT00940000160649
Wild yak	MODERN SPECIES	688	ENSBMUG00000024947	C1orf68 (ENSBMUG00000024927) #8	LCE3B (ENSBMUG00000024922) #9	ENSBMUG00000024916 #10	ENSBMUG00000024912 #12	ENSBMUG00000024905 #13	ENSBMUG00000024887 #15	ENSBMUG00000024880 ##18	ENSBMUG00000024877 ##18	ENSBMUG00000024872 #16	ENSBMUG00000024867 ##18	RPTN (ENSBMUG00000024866) #18	ENSBMUG00000024861 #19	TCHHL1 (ENSBMUG00000024857) #20	ENSBMUG00000024843 #21	S100A10 (ENSBMUG00000024837) #22	THEM4 (ENSBMUG00000024826) #23	THEM5 (ENSBMUG00000024818) #25	RORC (ENSBMUG00000024807) #27	LINGO4 (ENSBMUG00000024776) #28	TDRKH (ENSBMUG00000024766) #29	ENSBMUG00000024752 #30	OAZ3 (ENSBMUG00000024748) #31	MRPL9 (ENSBMUG00000024735) #32	RIIAD1 (ENSBMUG00000024721) #33	CELF3 (ENSBMUG00000024707) #34	SNX27 (ENSBMUG00000024681) #35	TUFT1 (ENSBMUG00000024610) #37	CGN (ENSBMUG00000024577)	POGZ (ENSBMUG00000024528)	PSMB4 (ENSBMUG00000024466)
Domestic yak	MODERN SPECIES	22	KPRP (ENSBGRG00000003208)	C1orf68 (ENSBGRG00000003205) #8	ENSBGRG00000003177	ENSBGRG00000003168 #11	ENSBGRG00000003159 #12	ENSBGRG00000003154 #13	ENSBGRG00000003149 #15	ENSBGRG00000003128 ##18	ENSBGRG00000003103 #16	ENSBGRG00000003087 ##18	ENSBGRG00000003077 #18	ENSBGRG00000003029 #19	ENSBGRG00000003014 #20	ENSBGRG00000002999	ENSBGRG00000002990 #21	S100A10 (ENSBGRG00000002962) #22	ENSBGRG00000002950 ##24	THEM4 (ENSBGRG00000002939) #23	THEM5 (ENSBGRG00000002906) #25	RORC (ENSBGRG00000002783) #27	TDRKH (ENSBGRG00000002702) #29	ENSBGRG00000002678 #30	ENSBGRG00000002657 #31	ENSBGRG00000002612 #28	RIIAD1 (ENSBGRG00000002574) #33	CELF3 (ENSBGRG00000002490) #34	SNX27 (ENSBGRG00000002390) #35	ENSBGRG00000002366 ##24	ENSBGRG00000002354	TUFT1 (ENSBGRG00000002325) #37	ENSBGRG00000002259
American bison	MODERN SPECIES	3295	ENSBBBG00000003062	ENSBBBG00000009107	SPRR4 (ENSBBBG00000013960)	ENSBBBG00000003052	ENSBBBG00000013950	KPRP (ENSBBBG00000013941)	C1orf68 (ENSBBBG00000013938) #8	LCE3B (ENSBBBG00000003036) #9	ENSBBBG00000013936 #10	ENSBBBG00000013932 #13	ENSBBBG00000003027 #15	ENSBBBG00000002896 ##18	ENSBBBG00000013898 #19	TCHHL1 (ENSBBBG00000013893) #20	ENSBBBG00000013884 #21	S100A10 (ENSBBBG00000013878) #22	THEM4 (ENSBBBG00000002992) #23	THEM5 (ENSBBBG00000002989) #25	RORC (ENSBBBG00000013856) #27	LINGO4 (ENSBBBG00000002969) #28	TDRKH (ENSBBBG00000013832) #29	ENSBBBG00000013787 #30	OAZ3 (ENSBBBG00000013776) #31	MRPL9 (ENSBBBG00000002933) #32	RIIAD1 (ENSBBBG00000013726) #33	CELF3 (ENSBBBG00000002911) #34	SNX27 (ENSBBBG00000013687) #35	ENSBBBG00000013643 #36	TUFT1 (ENSBBBG00000013630) #37	ENSBBBG00000013560	CGN (ENSBBBG00000013551)